Query 010968
Match_columns 496
No_of_seqs 348 out of 2173
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05971 Methyltransf_10: Prot 100.0 1.6E-81 3.5E-86 633.4 21.6 278 13-346 4-299 (299)
2 KOG2912 Predicted DNA methylas 100.0 8E-76 1.7E-80 587.1 23.0 296 14-363 5-309 (419)
3 PRK11727 23S rRNA mA1618 methy 100.0 1.5E-73 3.2E-78 582.3 27.9 284 13-349 13-312 (321)
4 COG3129 Predicted SAM-dependen 100.0 1.2E-53 2.7E-58 413.2 17.7 260 36-349 1-279 (292)
5 COG2890 HemK Methylase of poly 100.0 6.6E-32 1.4E-36 271.6 21.7 194 70-343 76-276 (280)
6 PRK01544 bifunctional N5-gluta 100.0 1.1E-29 2.5E-34 273.8 21.3 204 70-341 79-304 (506)
7 TIGR00536 hemK_fam HemK family 100.0 3E-29 6.4E-34 251.5 21.9 197 70-342 78-281 (284)
8 PRK14966 unknown domain/N5-glu 100.0 7E-29 1.5E-33 261.0 21.5 194 70-342 218-417 (423)
9 KOG2904 Predicted methyltransf 99.9 2.2E-26 4.7E-31 228.6 17.7 204 71-341 111-325 (328)
10 PRK09328 N5-glutamine S-adenos 99.9 1.5E-25 3.3E-30 220.5 22.7 195 70-342 73-274 (275)
11 TIGR03533 L3_gln_methyl protei 99.9 2.5E-25 5.5E-30 223.9 19.8 178 70-324 85-269 (284)
12 PRK11805 N5-glutamine S-adenos 99.9 1.7E-24 3.7E-29 220.4 22.0 178 70-324 97-281 (307)
13 PLN02672 methionine S-methyltr 99.9 5.7E-25 1.2E-29 252.5 20.2 185 70-327 82-301 (1082)
14 TIGR03704 PrmC_rel_meth putati 99.9 8E-24 1.7E-28 209.6 19.5 186 70-331 50-243 (251)
15 TIGR03534 RF_mod_PrmC protein- 99.9 3E-23 6.6E-28 200.7 20.4 192 70-340 53-251 (251)
16 COG4123 Predicted O-methyltran 99.8 1.1E-20 2.3E-25 187.4 14.9 175 116-355 45-223 (248)
17 PF05175 MTS: Methyltransferas 99.8 2.4E-18 5.1E-23 160.4 17.8 161 75-331 2-163 (170)
18 PRK14967 putative methyltransf 99.7 7.4E-16 1.6E-20 149.2 20.2 172 73-323 5-178 (223)
19 TIGR00537 hemK_rel_arch HemK-r 99.6 1.1E-14 2.4E-19 136.1 18.4 138 117-324 21-160 (179)
20 PRK14968 putative methyltransf 99.6 6.3E-14 1.4E-18 129.6 19.0 146 116-328 24-172 (188)
21 COG2813 RsmC 16S RNA G1207 met 99.6 1.8E-14 3.9E-19 146.2 16.6 127 117-328 160-286 (300)
22 PF13659 Methyltransf_26: Meth 99.6 1.2E-14 2.7E-19 125.0 11.1 115 117-305 2-116 (117)
23 PRK15001 SAM-dependent 23S rib 99.6 3.5E-14 7.5E-19 149.0 15.6 111 117-306 230-342 (378)
24 KOG3191 Predicted N6-DNA-methy 99.5 2.3E-13 4.9E-18 129.4 15.3 143 116-325 44-189 (209)
25 PRK09489 rsmC 16S ribosomal RN 99.4 4.1E-12 8.9E-17 131.8 17.9 117 117-315 198-314 (342)
26 PHA03412 putative methyltransf 99.4 1.1E-12 2.3E-17 129.9 11.8 106 116-299 50-158 (241)
27 COG2263 Predicted RNA methylas 99.4 5.6E-12 1.2E-16 120.7 15.9 138 86-324 25-163 (198)
28 PRK15128 23S rRNA m(5)C1962 me 99.3 9.4E-12 2E-16 131.5 14.4 163 116-359 221-385 (396)
29 PRK10909 rsmD 16S rRNA m(2)G96 99.3 6.3E-12 1.4E-16 121.4 11.8 93 71-176 19-111 (199)
30 TIGR01177 conserved hypothetic 99.3 5.3E-11 1.1E-15 122.2 18.3 143 116-339 183-326 (329)
31 PRK11783 rlmL 23S rRNA m(2)G24 99.3 1.3E-11 2.8E-16 138.7 14.6 145 116-333 539-684 (702)
32 PHA03411 putative methyltransf 99.3 1.3E-11 2.9E-16 124.6 11.3 135 116-322 65-207 (279)
33 COG2264 PrmA Ribosomal protein 99.3 8.2E-11 1.8E-15 120.0 15.7 142 89-330 147-289 (300)
34 PRK00107 gidB 16S rRNA methylt 99.3 1.2E-10 2.6E-15 111.4 15.8 122 116-327 46-167 (187)
35 PRK08287 cobalt-precorrin-6Y C 99.3 1.8E-10 3.8E-15 108.5 16.4 127 116-331 32-158 (187)
36 PF12847 Methyltransf_18: Meth 99.3 1.6E-10 3.5E-15 98.4 14.2 59 117-176 3-61 (112)
37 PRK00517 prmA ribosomal protei 99.2 2.9E-10 6.3E-15 112.4 16.3 119 116-329 120-238 (250)
38 TIGR00138 gidB 16S rRNA methyl 99.2 2.3E-10 5E-15 108.5 14.7 125 116-330 43-170 (181)
39 PF06325 PrmA: Ribosomal prote 99.2 1.3E-10 2.9E-15 118.5 12.9 137 89-329 146-283 (295)
40 PRK00377 cbiT cobalt-precorrin 99.2 3.1E-10 6.6E-15 108.2 13.6 143 116-344 41-184 (198)
41 PRK13168 rumA 23S rRNA m(5)U19 99.2 3.9E-10 8.5E-15 120.3 15.8 93 71-176 261-354 (443)
42 TIGR00406 prmA ribosomal prote 99.2 6.7E-10 1.4E-14 112.3 16.5 123 116-329 160-283 (288)
43 PLN02336 phosphoethanolamine N 99.1 1.5E-09 3.3E-14 116.1 17.3 86 69-176 238-323 (475)
44 TIGR00091 tRNA (guanine-N(7)-) 99.1 6.4E-10 1.4E-14 105.9 12.8 135 116-325 17-154 (194)
45 PRK00121 trmB tRNA (guanine-N( 99.1 5.7E-10 1.2E-14 107.1 12.2 132 116-322 41-174 (202)
46 PF01170 UPF0020: Putative RNA 99.1 1.3E-09 2.8E-14 103.3 13.4 128 116-323 29-165 (179)
47 PRK14902 16S rRNA methyltransf 99.1 1.4E-09 3E-14 116.1 14.3 149 116-325 251-404 (444)
48 TIGR02752 MenG_heptapren 2-hep 99.1 8.4E-09 1.8E-13 99.5 18.3 59 116-176 46-105 (231)
49 PRK03522 rumB 23S rRNA methylu 99.1 8.6E-10 1.9E-14 112.8 11.1 90 74-176 140-230 (315)
50 PF13847 Methyltransf_31: Meth 99.0 2.5E-09 5.4E-14 97.2 12.4 61 115-177 3-64 (152)
51 PRK10901 16S rRNA methyltransf 99.0 5.2E-09 1.1E-13 111.4 14.3 145 116-321 245-392 (427)
52 TIGR02469 CbiT precorrin-6Y C5 99.0 2E-08 4.3E-13 86.3 14.1 57 117-175 21-77 (124)
53 PLN02490 MPBQ/MSBQ methyltrans 99.0 4E-08 8.8E-13 102.3 18.9 148 116-351 114-281 (340)
54 TIGR02085 meth_trns_rumB 23S r 99.0 3.3E-09 7.1E-14 111.2 10.9 90 74-176 200-290 (374)
55 TIGR00095 RNA methyltransferas 98.9 4.1E-09 8.8E-14 100.8 9.5 93 72-176 16-108 (189)
56 PLN02244 tocopherol O-methyltr 98.9 7.3E-08 1.6E-12 99.8 19.0 85 89-176 93-177 (340)
57 smart00650 rADc Ribosomal RNA 98.9 6.2E-09 1.4E-13 96.7 9.7 56 116-177 14-69 (169)
58 PRK11036 putative S-adenosyl-L 98.9 1.9E-08 4E-13 99.5 13.3 58 116-176 45-102 (255)
59 PRK13944 protein-L-isoaspartat 98.9 1.1E-07 2.4E-12 91.5 17.5 60 116-176 73-133 (205)
60 TIGR00563 rsmB ribosomal RNA s 98.9 3.4E-08 7.4E-13 105.1 15.0 147 116-321 239-388 (426)
61 PRK11873 arsM arsenite S-adeno 98.9 1.1E-07 2.4E-12 94.4 17.5 59 116-176 78-137 (272)
62 PRK14896 ksgA 16S ribosomal RN 98.9 1.3E-08 2.9E-13 101.3 10.8 70 92-176 15-84 (258)
63 PLN02396 hexaprenyldihydroxybe 98.9 1.1E-07 2.3E-12 98.5 17.7 95 76-175 90-188 (322)
64 PRK00274 ksgA 16S ribosomal RN 98.9 6.2E-09 1.4E-13 104.5 8.4 55 116-177 43-97 (272)
65 PRK15451 tRNA cmo(5)U34 methyl 98.8 2.9E-08 6.3E-13 97.9 12.8 60 116-176 57-118 (247)
66 TIGR00479 rumA 23S rRNA (uraci 98.8 5.4E-08 1.2E-12 103.4 15.6 88 74-176 259-349 (431)
67 TIGR00446 nop2p NOL1/NOP2/sun 98.8 4E-08 8.6E-13 98.3 13.1 143 116-320 72-218 (264)
68 PRK07402 precorrin-6B methylas 98.8 6.7E-08 1.5E-12 91.8 13.8 58 116-175 41-98 (196)
69 PLN02233 ubiquinone biosynthes 98.8 2.9E-07 6.4E-12 91.9 19.0 61 116-176 74-136 (261)
70 TIGR00477 tehB tellurite resis 98.8 5.6E-08 1.2E-12 92.8 13.3 55 116-175 31-85 (195)
71 PTZ00338 dimethyladenosine tra 98.8 2E-08 4.4E-13 102.5 10.7 58 116-176 37-94 (294)
72 PRK04457 spermidine synthase; 98.8 1.2E-07 2.6E-12 95.0 16.1 75 93-176 52-126 (262)
73 PRK11783 rlmL 23S rRNA m(2)G24 98.8 7.3E-08 1.6E-12 108.8 14.5 61 116-177 191-293 (702)
74 PRK11188 rrmJ 23S rRNA methylt 98.8 1.1E-07 2.4E-12 92.1 13.8 151 116-344 52-207 (209)
75 PRK14903 16S rRNA methyltransf 98.8 6.3E-08 1.4E-12 103.6 12.7 145 116-321 238-386 (431)
76 TIGR00740 methyltransferase, p 98.8 1.8E-07 3.9E-12 91.4 14.9 60 116-176 54-115 (239)
77 smart00828 PKS_MT Methyltransf 98.7 2.9E-07 6.3E-12 88.4 14.6 58 118-176 2-59 (224)
78 PRK14901 16S rRNA methyltransf 98.7 1.7E-07 3.7E-12 100.1 14.3 147 116-321 253-404 (434)
79 TIGR00438 rrmJ cell division p 98.7 3.1E-07 6.8E-12 86.7 14.5 150 116-344 33-188 (188)
80 KOG3420 Predicted RNA methylas 98.7 3.4E-08 7.4E-13 91.7 7.7 58 115-177 48-106 (185)
81 PRK12335 tellurite resistance 98.7 4.5E-07 9.7E-12 91.6 16.2 55 116-175 121-175 (287)
82 PLN02781 Probable caffeoyl-CoA 98.7 3.6E-08 7.9E-13 97.2 7.9 61 116-177 69-130 (234)
83 PRK14103 trans-aconitate 2-met 98.7 1.3E-07 2.9E-12 93.3 11.7 42 116-157 30-71 (255)
84 PRK14904 16S rRNA methyltransf 98.7 2.2E-07 4.7E-12 99.6 14.1 143 116-321 251-397 (445)
85 PRK14121 tRNA (guanine-N(7)-)- 98.7 5.7E-07 1.2E-11 95.2 16.7 59 116-176 123-181 (390)
86 PRK11207 tellurite resistance 98.7 2.2E-07 4.7E-12 88.9 12.4 56 116-175 31-86 (197)
87 PLN02585 magnesium protoporphy 98.7 1.4E-07 3.1E-12 97.2 11.6 81 73-162 109-189 (315)
88 COG2242 CobL Precorrin-6B meth 98.7 8.5E-07 1.9E-11 85.2 15.9 140 116-343 35-174 (187)
89 PRK00216 ubiE ubiquinone/menaq 98.7 8.4E-07 1.8E-11 84.8 16.0 60 116-176 52-112 (239)
90 cd02440 AdoMet_MTases S-adenos 98.7 4.2E-07 9.1E-12 72.8 11.8 56 118-176 1-56 (107)
91 TIGR00080 pimt protein-L-isoas 98.6 2.3E-07 5E-12 89.6 11.8 59 116-176 78-137 (215)
92 TIGR02987 met_A_Alw26 type II 98.6 1.5E-07 3.3E-12 102.5 11.2 49 115-163 31-87 (524)
93 PRK06922 hypothetical protein; 98.6 3.2E-07 6.9E-12 102.2 13.8 120 116-305 419-538 (677)
94 TIGR03587 Pse_Me-ase pseudamin 98.6 1.9E-07 4.1E-12 90.3 10.0 44 116-159 44-87 (204)
95 PTZ00098 phosphoethanolamine N 98.6 1.7E-06 3.7E-11 86.5 17.2 56 116-176 53-108 (263)
96 PF02384 N6_Mtase: N-6 DNA Met 98.6 4.1E-07 8.8E-12 92.1 12.8 59 116-175 47-113 (311)
97 PRK05031 tRNA (uracil-5-)-meth 98.6 9E-08 2E-12 100.1 8.3 56 117-176 208-263 (362)
98 PRK00811 spermidine synthase; 98.6 2.5E-06 5.5E-11 86.4 18.3 62 115-176 76-140 (283)
99 PRK08317 hypothetical protein; 98.6 3.1E-06 6.7E-11 80.4 17.7 72 92-175 5-77 (241)
100 TIGR02143 trmA_only tRNA (urac 98.6 1.8E-07 3.8E-12 97.7 9.5 55 118-176 200-254 (353)
101 TIGR02716 C20_methyl_CrtF C-20 98.6 1.5E-06 3.1E-11 88.2 15.9 60 116-177 150-209 (306)
102 PF03602 Cons_hypoth95: Conser 98.6 1.6E-07 3.5E-12 89.6 8.4 89 73-176 9-101 (183)
103 PF13649 Methyltransf_25: Meth 98.6 1.2E-07 2.6E-12 80.4 6.7 55 119-176 1-58 (101)
104 PRK03612 spermidine synthase; 98.6 2.9E-07 6.2E-12 100.7 10.7 136 115-328 297-442 (521)
105 PRK01683 trans-aconitate 2-met 98.5 5.1E-07 1.1E-11 88.8 10.9 53 116-175 32-84 (258)
106 PRK10258 biotin biosynthesis p 98.5 1.3E-06 2.8E-11 85.7 13.3 42 116-159 43-84 (251)
107 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 1E-05 2.2E-10 76.5 18.3 57 116-176 40-97 (223)
108 COG2227 UbiG 2-polyprenyl-3-me 98.5 2.4E-07 5.2E-12 92.0 6.2 65 88-163 41-105 (243)
109 TIGR00755 ksgA dimethyladenosi 98.5 6.1E-07 1.3E-11 88.9 9.0 55 116-176 30-84 (253)
110 PRK00312 pcm protein-L-isoaspa 98.5 2E-06 4.3E-11 82.6 12.2 72 92-176 64-135 (212)
111 PRK05134 bifunctional 3-demeth 98.5 7.4E-06 1.6E-10 79.3 16.4 55 116-175 49-103 (233)
112 PF09445 Methyltransf_15: RNA 98.4 4.4E-06 9.4E-11 78.9 13.8 148 118-334 2-152 (163)
113 TIGR02072 BioC biotin biosynth 98.4 2.9E-06 6.4E-11 80.8 12.8 55 116-176 35-89 (240)
114 PRK04266 fibrillarin; Provisio 98.4 6.1E-06 1.3E-10 81.4 15.3 57 116-176 73-129 (226)
115 PF01209 Ubie_methyltran: ubiE 98.4 8.1E-07 1.7E-11 87.9 8.9 59 116-176 48-107 (233)
116 PF08241 Methyltransf_11: Meth 98.4 9.9E-07 2.1E-11 71.7 7.9 51 120-176 1-51 (95)
117 PRK06202 hypothetical protein; 98.4 5.9E-07 1.3E-11 87.4 7.7 48 115-162 60-111 (232)
118 COG2226 UbiE Methylase involve 98.4 8.3E-07 1.8E-11 88.4 8.7 59 116-176 52-110 (238)
119 PRK13942 protein-L-isoaspartat 98.4 3.3E-06 7.2E-11 81.9 12.7 59 116-176 77-136 (212)
120 PRK07580 Mg-protoporphyrin IX 98.4 6E-06 1.3E-10 79.2 14.4 57 116-175 64-120 (230)
121 TIGR02021 BchM-ChlM magnesium 98.4 1E-06 2.2E-11 84.8 8.7 58 116-176 56-113 (219)
122 PRK04338 N(2),N(2)-dimethylgua 98.4 5.3E-07 1.1E-11 95.3 7.1 57 117-175 59-115 (382)
123 PRK11705 cyclopropane fatty ac 98.4 4E-06 8.6E-11 88.6 13.4 54 116-175 168-221 (383)
124 COG1092 Predicted SAM-dependen 98.4 1.8E-06 3.9E-11 91.6 10.2 132 116-319 218-352 (393)
125 COG0116 Predicted N6-adenine-s 98.4 5.1E-06 1.1E-10 87.6 13.3 60 117-177 193-291 (381)
126 COG2519 GCD14 tRNA(1-methylade 98.4 6.7E-06 1.4E-10 82.4 13.4 127 116-331 95-222 (256)
127 PLN03075 nicotianamine synthas 98.3 4.3E-06 9.3E-11 85.8 12.3 63 115-177 123-187 (296)
128 KOG1271 Methyltransferases [Ge 98.3 2E-06 4.3E-11 82.8 9.2 80 92-177 49-128 (227)
129 TIGR00452 methyltransferase, p 98.3 2.2E-05 4.9E-10 81.1 17.5 58 116-175 122-179 (314)
130 PF08704 GCD14: tRNA methyltra 98.3 1.7E-05 3.8E-10 79.4 15.7 137 116-340 41-179 (247)
131 COG2230 Cfa Cyclopropane fatty 98.3 3.6E-06 7.7E-11 85.8 10.4 60 116-177 73-132 (283)
132 PRK01581 speE spermidine synth 98.3 2.3E-05 5.1E-10 82.5 16.6 62 115-176 150-216 (374)
133 PRK15068 tRNA mo(5)U34 methylt 98.3 2.2E-05 4.9E-10 81.1 15.8 58 116-175 123-180 (322)
134 PF10672 Methyltrans_SAM: S-ad 98.3 5.3E-06 1.1E-10 84.7 10.9 130 116-321 124-256 (286)
135 TIGR00417 speE spermidine synt 98.3 5.4E-05 1.2E-09 76.1 17.7 60 116-175 73-134 (270)
136 PRK11088 rrmA 23S rRNA methylt 98.2 9.3E-06 2E-10 81.3 11.6 53 116-175 86-141 (272)
137 PF03848 TehB: Tellurite resis 98.2 7.9E-06 1.7E-10 79.1 9.9 57 115-176 30-86 (192)
138 PRK13943 protein-L-isoaspartat 98.2 7.9E-06 1.7E-10 84.7 10.5 58 116-175 81-139 (322)
139 TIGR01983 UbiG ubiquinone bios 98.2 7.9E-05 1.7E-09 71.4 16.7 72 95-175 30-101 (224)
140 PF02475 Met_10: Met-10+ like- 98.2 7.6E-06 1.6E-10 79.6 8.9 60 116-176 102-161 (200)
141 PF02353 CMAS: Mycolic acid cy 98.2 7.1E-06 1.5E-10 83.1 8.9 59 116-176 63-121 (273)
142 TIGR02081 metW methionine bios 98.1 1.8E-05 4E-10 75.0 11.1 40 117-157 15-54 (194)
143 PLN02366 spermidine synthase 98.1 0.00012 2.5E-09 75.6 17.8 96 72-176 56-154 (308)
144 PF01596 Methyltransf_3: O-met 98.1 3.6E-06 7.8E-11 82.0 6.4 61 115-176 45-106 (205)
145 COG2265 TrmA SAM-dependent met 98.1 5.5E-06 1.2E-10 89.0 8.2 90 74-176 260-350 (432)
146 COG4122 Predicted O-methyltran 98.1 1E-05 2.2E-10 79.8 8.8 73 89-174 45-118 (219)
147 PLN02476 O-methyltransferase 98.1 7.7E-06 1.7E-10 83.2 7.9 60 116-176 119-179 (278)
148 PF08242 Methyltransf_12: Meth 98.1 3.5E-07 7.5E-12 76.9 -1.8 44 120-163 1-44 (99)
149 PF05958 tRNA_U5-meth_tr: tRNA 98.1 1.3E-05 2.8E-10 83.8 9.0 54 118-175 199-252 (352)
150 KOG1270 Methyltransferases [Co 98.1 4.1E-06 8.8E-11 84.4 5.0 53 117-171 91-143 (282)
151 smart00138 MeTrc Methyltransfe 98.1 4.2E-06 9.1E-11 84.0 4.9 45 115-159 99-152 (264)
152 PLN02336 phosphoethanolamine N 98.0 3.3E-05 7.2E-10 82.9 11.7 55 116-176 38-92 (475)
153 PRK05785 hypothetical protein; 98.0 1.5E-05 3.4E-10 78.1 8.2 42 116-158 52-93 (226)
154 KOG2187 tRNA uracil-5-methyltr 98.0 1.2E-05 2.6E-10 87.1 7.0 93 70-175 346-439 (534)
155 PF01135 PCMT: Protein-L-isoas 98.0 6.5E-05 1.4E-09 73.5 11.5 88 74-176 44-132 (209)
156 TIGR03438 probable methyltrans 98.0 0.00017 3.8E-09 73.5 15.1 61 116-177 64-125 (301)
157 PF10294 Methyltransf_16: Puta 97.9 1.6E-05 3.6E-10 74.9 6.1 61 115-176 45-106 (173)
158 KOG1540 Ubiquinone biosynthesi 97.9 0.00014 2.9E-09 73.4 12.6 61 115-176 100-168 (296)
159 PF04816 DUF633: Family of unk 97.9 0.00011 2.3E-09 71.8 11.0 57 119-176 1-57 (205)
160 COG2521 Predicted archaeal met 97.9 3E-05 6.6E-10 77.2 6.9 140 115-333 134-281 (287)
161 COG1041 Predicted DNA modifica 97.8 0.00029 6.4E-09 73.7 14.0 143 116-340 198-342 (347)
162 TIGR00308 TRM1 tRNA(guanine-26 97.8 3.1E-05 6.7E-10 81.9 6.7 58 116-175 45-103 (374)
163 KOG1499 Protein arginine N-met 97.8 6E-05 1.3E-09 78.6 8.4 58 116-176 61-118 (346)
164 PLN02589 caffeoyl-CoA O-methyl 97.8 9E-05 1.9E-09 74.3 9.3 60 116-176 80-140 (247)
165 COG0742 N6-adenine-specific me 97.8 6.6E-05 1.4E-09 72.5 7.6 60 115-176 43-102 (187)
166 PF05185 PRMT5: PRMT5 arginine 97.8 7.5E-05 1.6E-09 80.7 8.8 61 116-177 187-251 (448)
167 COG2518 Pcm Protein-L-isoaspar 97.7 0.00022 4.7E-09 70.0 10.7 57 116-176 73-129 (209)
168 PLN02823 spermine synthase 97.7 0.0009 1.9E-08 70.0 15.5 63 115-177 103-167 (336)
169 TIGR01444 fkbM_fam methyltrans 97.7 0.00013 2.7E-09 65.1 7.3 57 118-176 1-57 (143)
170 KOG1500 Protein arginine N-met 97.6 0.00013 2.8E-09 76.0 7.8 59 115-176 177-235 (517)
171 PF05401 NodS: Nodulation prot 97.6 0.00012 2.5E-09 71.4 7.1 54 117-176 45-98 (201)
172 COG4106 Tam Trans-aconitate me 97.6 8.3E-05 1.8E-09 73.5 5.8 56 115-177 30-85 (257)
173 PF07021 MetW: Methionine bios 97.6 0.00012 2.7E-09 70.9 6.6 52 116-177 14-65 (193)
174 KOG2899 Predicted methyltransf 97.6 0.00019 4.2E-09 71.9 8.2 47 115-161 58-104 (288)
175 COG0286 HsdM Type I restrictio 97.6 0.00078 1.7E-08 73.6 13.2 58 117-175 188-249 (489)
176 PF02527 GidB: rRNA small subu 97.5 0.0037 7.9E-08 60.2 15.2 127 118-333 51-179 (184)
177 PRK13255 thiopurine S-methyltr 97.5 0.00045 9.7E-09 67.8 9.2 39 116-156 38-76 (218)
178 PTZ00146 fibrillarin; Provisio 97.5 0.0064 1.4E-07 62.6 17.7 56 117-176 134-190 (293)
179 PRK04148 hypothetical protein; 97.4 0.00037 7.9E-09 64.1 7.1 52 115-177 16-68 (134)
180 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00059 1.3E-08 68.3 9.1 71 92-177 16-86 (262)
181 COG2384 Predicted SAM-dependen 97.4 0.0037 8E-08 61.9 14.3 130 117-334 18-147 (226)
182 COG0030 KsgA Dimethyladenosine 97.4 0.00084 1.8E-08 67.9 9.3 56 116-177 31-86 (259)
183 TIGR03840 TMPT_Se_Te thiopurin 97.4 0.00046 9.9E-09 67.5 7.1 40 116-157 35-74 (213)
184 PF02390 Methyltransf_4: Putat 97.2 0.0014 3.1E-08 63.2 9.0 59 117-177 19-77 (195)
185 KOG3010 Methyltransferase [Gen 97.2 0.00046 9.9E-09 69.1 5.2 57 86-157 17-73 (261)
186 PRK11933 yebU rRNA (cytosine-C 97.1 0.0042 9.2E-08 67.8 11.9 144 116-321 114-262 (470)
187 PF13679 Methyltransf_32: Meth 97.1 0.0018 3.8E-08 58.9 7.6 60 115-174 25-89 (141)
188 PF13489 Methyltransf_23: Meth 97.1 0.0016 3.5E-08 58.2 7.2 38 115-154 22-59 (161)
189 KOG1541 Predicted protein carb 97.1 0.00042 9.2E-09 68.7 3.6 41 115-157 50-90 (270)
190 KOG0820 Ribosomal RNA adenine 97.1 0.0018 3.9E-08 66.1 7.8 59 116-177 59-117 (315)
191 PRK00050 16S rRNA m(4)C1402 me 97.0 0.0013 2.9E-08 67.6 7.0 57 116-176 20-77 (296)
192 PF03291 Pox_MCEL: mRNA cappin 96.9 0.0087 1.9E-07 62.5 11.3 64 94-159 41-105 (331)
193 PF07091 FmrO: Ribosomal RNA m 96.8 0.003 6.6E-08 63.6 7.2 118 24-177 47-164 (251)
194 KOG4300 Predicted methyltransf 96.6 0.013 2.9E-07 57.9 9.8 58 115-175 76-134 (252)
195 PF11599 AviRa: RRNA methyltra 96.6 0.0032 7E-08 62.3 5.6 69 86-161 29-99 (246)
196 PRK10742 putative methyltransf 96.6 0.0071 1.5E-07 61.0 7.8 58 116-175 89-153 (250)
197 PRK10611 chemotaxis methyltran 96.5 0.005 1.1E-07 63.2 6.6 45 115-159 115-167 (287)
198 PF01564 Spermine_synth: Sperm 96.5 0.057 1.2E-06 54.0 13.5 62 115-176 76-139 (246)
199 PRK13256 thiopurine S-methyltr 96.4 0.016 3.4E-07 57.7 9.1 40 116-157 44-83 (226)
200 KOG1663 O-methyltransferase [S 96.4 0.026 5.5E-07 56.4 10.3 100 57-177 34-135 (237)
201 COG3897 Predicted methyltransf 96.4 0.017 3.7E-07 56.6 8.7 57 115-175 79-135 (218)
202 COG0220 Predicted S-adenosylme 96.3 0.0097 2.1E-07 59.1 7.0 58 117-176 50-107 (227)
203 COG4076 Predicted RNA methylas 96.3 0.0047 1E-07 60.3 4.5 58 117-178 34-91 (252)
204 COG2520 Predicted methyltransf 96.3 0.0073 1.6E-07 63.4 6.2 60 116-177 189-248 (341)
205 COG0144 Sun tRNA and rRNA cyto 96.1 0.16 3.4E-06 53.6 14.9 146 116-320 157-307 (355)
206 KOG2730 Methylase [General fun 96.0 0.0036 7.8E-08 62.2 2.3 59 116-177 95-153 (263)
207 PF01861 DUF43: Protein of unk 96.0 0.14 3.1E-06 51.5 13.2 59 116-178 45-103 (243)
208 PF00891 Methyltransf_2: O-met 95.9 0.018 4E-07 56.3 6.6 54 116-178 101-154 (241)
209 KOG1501 Arginine N-methyltrans 95.6 0.031 6.6E-07 60.5 7.4 60 114-175 65-124 (636)
210 COG4976 Predicted methyltransf 95.6 0.0049 1.1E-07 61.7 1.3 41 116-158 126-166 (287)
211 PF06962 rRNA_methylase: Putat 95.4 0.2 4.4E-06 46.5 11.2 109 141-321 1-114 (140)
212 TIGR00478 tly hemolysin TlyA f 95.4 0.024 5.2E-07 56.4 5.3 38 116-154 76-113 (228)
213 PRK01544 bifunctional N5-gluta 95.1 0.061 1.3E-06 59.2 7.7 59 115-175 347-405 (506)
214 PLN02232 ubiquinone biosynthes 95.0 0.44 9.5E-06 44.2 12.3 34 143-176 1-35 (160)
215 COG0357 GidB Predicted S-adeno 95.0 0.047 1E-06 54.0 6.1 77 92-175 48-125 (215)
216 PF12147 Methyltransf_20: Puta 94.7 0.19 4.2E-06 52.0 9.8 65 113-178 133-199 (311)
217 PF08003 Methyltransf_9: Prote 94.4 0.14 3E-06 53.4 7.8 40 115-155 115-154 (315)
218 KOG1975 mRNA cap methyltransfe 94.3 0.2 4.4E-06 52.6 8.9 155 82-320 91-250 (389)
219 KOG2915 tRNA(1-methyladenosine 94.3 0.97 2.1E-05 46.6 13.4 61 117-178 107-168 (314)
220 COG0421 SpeE Spermidine syntha 94.1 0.19 4.1E-06 51.7 8.0 62 115-176 76-139 (282)
221 PF07669 Eco57I: Eco57I restri 94.0 0.07 1.5E-06 46.6 4.3 66 241-320 2-72 (106)
222 KOG2361 Predicted methyltransf 94.0 0.045 9.7E-07 55.2 3.2 46 117-163 73-121 (264)
223 PF05724 TPMT: Thiopurine S-me 93.9 0.087 1.9E-06 51.9 5.1 39 116-156 38-76 (218)
224 PF01739 CheR: CheR methyltran 93.8 0.072 1.6E-06 51.8 4.2 44 115-158 31-83 (196)
225 KOG2671 Putative RNA methylase 93.7 0.045 9.7E-07 57.7 2.8 74 77-153 148-244 (421)
226 PRK11524 putative methyltransf 93.3 0.31 6.7E-06 49.5 8.1 72 239-322 25-96 (284)
227 TIGR00497 hsdM type I restrict 93.2 0.22 4.7E-06 54.7 7.3 47 117-163 219-269 (501)
228 PF02005 TRM: N2,N2-dimethylgu 92.8 0.26 5.7E-06 52.5 7.0 61 115-176 49-111 (377)
229 PF08123 DOT1: Histone methyla 92.7 0.45 9.8E-06 46.6 7.9 44 116-160 43-87 (205)
230 KOG3115 Methyltransferase-like 92.7 0.14 2.9E-06 50.8 4.2 48 115-162 60-107 (249)
231 KOG4058 Uncharacterized conser 92.5 0.19 4.1E-06 47.6 4.7 82 84-176 50-131 (199)
232 COG1352 CheR Methylase of chem 92.3 0.18 3.9E-06 51.4 4.8 44 115-158 96-148 (268)
233 PF06080 DUF938: Protein of un 92.2 0.9 2E-05 44.8 9.3 45 118-162 28-72 (204)
234 KOG1661 Protein-L-isoaspartate 91.8 0.36 7.8E-06 48.0 5.9 47 116-162 83-131 (237)
235 PF05219 DREV: DREV methyltran 91.7 0.53 1.2E-05 48.0 7.2 85 60-153 43-130 (265)
236 PF09243 Rsm22: Mitochondrial 91.6 0.39 8.5E-06 48.8 6.2 48 115-162 33-81 (274)
237 PF01555 N6_N4_Mtase: DNA meth 90.9 0.45 9.7E-06 44.8 5.6 41 115-157 191-231 (231)
238 cd00315 Cyt_C5_DNA_methylase C 90.6 0.54 1.2E-05 47.6 6.2 41 118-160 2-43 (275)
239 TIGR00006 S-adenosyl-methyltra 90.4 1.5 3.2E-05 45.7 9.2 58 116-176 21-78 (305)
240 PF01189 Nol1_Nop2_Fmu: NOL1/N 89.8 0.87 1.9E-05 46.5 6.9 144 116-321 86-239 (283)
241 PRK13699 putative methylase; P 89.7 2.3 5.1E-05 42.1 9.7 76 238-325 17-92 (227)
242 COG0500 SmtA SAM-dependent met 89.6 0.72 1.6E-05 37.1 5.0 41 119-160 52-93 (257)
243 PF05148 Methyltransf_8: Hypot 89.4 4.8 0.0001 40.2 11.4 67 239-334 120-188 (219)
244 PF03059 NAS: Nicotianamine sy 89.4 1.1 2.5E-05 45.9 7.4 85 89-176 97-183 (276)
245 TIGR03439 methyl_EasF probable 89.0 0.94 2E-05 47.4 6.5 45 116-160 77-125 (319)
246 PRK11760 putative 23S rRNA C24 88.5 2.2 4.8E-05 45.3 8.9 51 115-176 211-261 (357)
247 COG1867 TRM1 N2,N2-dimethylgua 88.1 0.94 2E-05 48.3 5.9 58 116-175 53-110 (380)
248 PRK11524 putative methyltransf 87.5 1.5 3.2E-05 44.6 6.8 45 115-161 208-252 (284)
249 PF13578 Methyltransf_24: Meth 84.5 0.6 1.3E-05 39.7 1.9 55 120-176 1-58 (106)
250 PF07757 AdoMet_MTase: Predict 82.7 1.1 2.3E-05 40.3 2.7 32 115-148 58-89 (112)
251 PF01728 FtsJ: FtsJ-like methy 81.4 0.95 2.1E-05 42.3 2.1 36 115-150 23-59 (181)
252 PF01795 Methyltransf_5: MraW 80.9 1.8 3.9E-05 45.2 4.1 58 116-176 21-78 (310)
253 COG0293 FtsJ 23S rRNA methylas 80.9 40 0.00086 33.5 13.1 154 116-346 46-203 (205)
254 KOG3045 Predicted RNA methylas 80.1 19 0.0004 37.4 10.8 42 283-324 243-286 (325)
255 PF04989 CmcI: Cephalosporin h 79.4 1.6 3.4E-05 43.2 2.9 60 115-177 32-95 (206)
256 KOG2078 tRNA modification enzy 79.3 1.1 2.3E-05 48.8 1.8 57 117-176 251-308 (495)
257 PHA01634 hypothetical protein 78.7 4.2 9E-05 37.9 5.2 46 115-163 28-75 (156)
258 COG4262 Predicted spermidine s 78.3 5.1 0.00011 43.2 6.4 60 116-176 290-355 (508)
259 PRK13699 putative methylase; P 78.3 6.6 0.00014 38.9 7.0 46 115-162 163-208 (227)
260 COG3963 Phospholipid N-methylt 77.1 7.7 0.00017 37.7 6.7 76 82-176 27-103 (194)
261 PF00145 DNA_methylase: C-5 cy 76.8 4.2 9E-05 40.6 5.2 41 118-160 2-43 (335)
262 KOG2793 Putative N2,N2-dimethy 76.0 3.7 8E-05 41.7 4.5 35 115-150 86-120 (248)
263 KOG1253 tRNA methyltransferase 75.3 1.9 4.2E-05 47.6 2.4 105 62-176 49-170 (525)
264 PF04672 Methyltransf_19: S-ad 74.0 6.3 0.00014 40.5 5.6 59 117-178 70-132 (267)
265 PF05050 Methyltransf_21: Meth 72.9 7.8 0.00017 34.5 5.5 53 121-174 1-59 (167)
266 COG0275 Predicted S-adenosylme 72.2 19 0.00041 37.8 8.6 57 117-176 25-82 (314)
267 PRK10458 DNA cytosine methylas 71.4 16 0.00034 40.4 8.3 64 91-159 66-130 (467)
268 COG1063 Tdh Threonine dehydrog 67.6 17 0.00036 38.1 7.3 40 118-157 171-211 (350)
269 PF02636 Methyltransf_28: Puta 67.2 6.3 0.00014 39.2 3.9 47 115-161 18-72 (252)
270 PRK00536 speE spermidine synth 65.9 10 0.00022 38.7 5.1 77 71-158 37-113 (262)
271 PF05891 Methyltransf_PK: AdoM 62.6 16 0.00035 36.5 5.7 46 115-161 55-100 (218)
272 TIGR00675 dcm DNA-methyltransf 59.1 14 0.0003 38.3 4.7 39 119-159 1-40 (315)
273 PF01555 N6_N4_Mtase: DNA meth 58.7 18 0.00039 33.9 5.1 75 242-323 1-77 (231)
274 PF03141 Methyltransf_29: Puta 57.2 9.2 0.0002 42.5 3.2 53 76-135 84-137 (506)
275 PF01234 NNMT_PNMT_TEMT: NNMT/ 54.8 6.6 0.00014 40.0 1.5 43 116-159 57-99 (256)
276 PRK01747 mnmC bifunctional tRN 54.7 62 0.0014 36.8 9.4 53 280-342 186-238 (662)
277 KOG2651 rRNA adenine N-6-methy 54.6 20 0.00044 38.9 5.1 41 117-158 155-195 (476)
278 COG1064 AdhP Zn-dependent alco 54.1 18 0.00038 38.5 4.6 80 75-158 124-209 (339)
279 COG1568 Predicted methyltransf 54.0 25 0.00055 36.8 5.5 59 116-177 153-211 (354)
280 KOG2352 Predicted spermine/spe 51.7 6.6 0.00014 43.4 1.0 47 115-161 295-341 (482)
281 COG0270 Dcm Site-specific DNA 51.6 21 0.00045 37.2 4.6 43 116-160 3-46 (328)
282 PRK05854 short chain dehydroge 51.0 42 0.00091 34.1 6.7 59 117-177 15-75 (313)
283 KOG2940 Predicted methyltransf 49.9 17 0.00037 37.1 3.5 42 116-158 73-114 (325)
284 PTZ00357 methyltransferase; Pr 47.9 55 0.0012 38.3 7.4 63 116-178 701-774 (1072)
285 PRK08340 glucose-1-dehydrogena 47.1 38 0.00083 32.8 5.5 55 118-177 2-58 (259)
286 PF12368 DUF3650: Protein of u 46.9 6.6 0.00014 27.1 0.1 9 15-23 3-11 (28)
287 COG1565 Uncharacterized conser 46.8 61 0.0013 34.9 7.2 61 96-162 64-132 (370)
288 KOG3178 Hydroxyindole-O-methyl 46.0 33 0.00072 36.5 5.1 58 117-182 179-236 (342)
289 PRK05599 hypothetical protein; 43.7 52 0.0011 31.9 5.8 56 119-177 3-59 (246)
290 PRK06124 gluconate 5-dehydroge 43.5 1.2E+02 0.0026 29.1 8.3 58 116-177 11-70 (256)
291 PRK08303 short chain dehydroge 43.4 62 0.0013 33.0 6.5 58 116-177 8-77 (305)
292 cd08283 FDH_like_1 Glutathione 43.4 53 0.0011 34.3 6.2 43 116-158 185-228 (386)
293 PRK06125 short chain dehydroge 43.0 88 0.0019 30.2 7.3 58 117-177 8-67 (259)
294 PRK07102 short chain dehydroge 42.5 1.1E+02 0.0024 29.1 7.9 57 118-177 3-61 (243)
295 PRK06172 short chain dehydroge 41.7 1.4E+02 0.003 28.6 8.4 57 117-177 8-66 (253)
296 KOG3987 Uncharacterized conser 41.2 9.4 0.0002 38.4 0.2 86 60-156 63-151 (288)
297 PF04445 SAM_MT: Putative SAM- 40.8 85 0.0018 31.8 6.8 60 116-177 76-142 (234)
298 KOG1227 Putative methyltransfe 40.2 7.1 0.00015 41.0 -0.9 59 117-177 196-255 (351)
299 PRK07666 fabG 3-ketoacyl-(acyl 40.0 1.5E+02 0.0032 28.2 8.2 57 117-177 8-66 (239)
300 PRK08339 short chain dehydroge 39.9 1.4E+02 0.003 29.3 8.2 58 117-177 9-68 (263)
301 PRK08213 gluconate 5-dehydroge 39.8 1.5E+02 0.0032 28.6 8.3 57 117-177 13-71 (259)
302 PRK05867 short chain dehydroge 39.7 1.5E+02 0.0034 28.4 8.4 57 117-177 10-68 (253)
303 PRK07063 short chain dehydroge 39.6 1.6E+02 0.0034 28.5 8.4 60 116-177 7-68 (260)
304 PRK06940 short chain dehydroge 39.2 82 0.0018 31.2 6.5 50 125-177 9-59 (275)
305 PF01269 Fibrillarin: Fibrilla 38.9 4.3E+02 0.0094 26.8 14.9 129 116-330 74-213 (229)
306 PRK06949 short chain dehydroge 38.7 1.6E+02 0.0036 28.1 8.4 58 116-177 9-68 (258)
307 PF03514 GRAS: GRAS domain fam 38.2 55 0.0012 34.9 5.4 48 113-160 108-166 (374)
308 PRK07814 short chain dehydroge 38.2 1.6E+02 0.0034 28.7 8.2 57 117-177 11-69 (263)
309 PRK07791 short chain dehydroge 38.2 68 0.0015 32.1 5.8 57 117-177 7-74 (286)
310 COG5379 BtaA S-adenosylmethion 38.1 59 0.0013 34.4 5.3 44 115-161 63-107 (414)
311 PRK07677 short chain dehydroge 37.8 1.6E+02 0.0034 28.3 8.1 56 118-177 3-60 (252)
312 PRK12481 2-deoxy-D-gluconate 3 37.7 88 0.0019 30.4 6.3 55 117-177 9-65 (251)
313 PRK07576 short chain dehydroge 37.5 1.6E+02 0.0035 28.7 8.2 57 117-177 10-68 (264)
314 PRK06914 short chain dehydroge 36.7 1.7E+02 0.0037 28.5 8.3 58 118-177 5-64 (280)
315 PRK07454 short chain dehydroge 36.3 2E+02 0.0042 27.4 8.4 57 117-177 7-65 (241)
316 PRK07326 short chain dehydroge 36.1 1.6E+02 0.0034 27.8 7.7 56 117-177 7-64 (237)
317 PF13651 EcoRI_methylase: Aden 35.8 17 0.00037 38.4 1.1 12 241-252 135-146 (336)
318 KOG2920 Predicted methyltransf 35.5 23 0.0005 36.7 1.9 37 116-153 117-153 (282)
319 PRK08251 short chain dehydroge 34.9 2E+02 0.0043 27.4 8.2 59 117-177 3-63 (248)
320 PRK07523 gluconate 5-dehydroge 34.8 1.9E+02 0.0042 27.7 8.2 58 116-177 10-69 (255)
321 PF07942 N2227: N2227-like pro 34.7 78 0.0017 32.6 5.6 68 89-159 31-98 (270)
322 PRK05872 short chain dehydroge 34.7 67 0.0015 32.2 5.1 57 116-177 9-67 (296)
323 KOG1201 Hydroxysteroid 17-beta 34.5 1.9E+02 0.0041 30.5 8.3 58 115-177 37-96 (300)
324 PRK06181 short chain dehydroge 34.2 2E+02 0.0043 27.7 8.2 56 118-177 3-60 (263)
325 PF11899 DUF3419: Protein of u 34.1 69 0.0015 34.5 5.3 42 117-160 37-78 (380)
326 PRK12826 3-ketoacyl-(acyl-carr 34.0 1.9E+02 0.0041 27.3 7.9 57 117-177 7-65 (251)
327 TIGR01500 sepiapter_red sepiap 33.8 1.7E+02 0.0038 28.2 7.7 58 118-177 2-65 (256)
328 PRK08416 7-alpha-hydroxysteroi 33.8 1.1E+02 0.0023 29.8 6.2 58 117-177 9-69 (260)
329 PRK07904 short chain dehydroge 33.0 1.8E+02 0.0039 28.4 7.7 60 115-177 7-70 (253)
330 PF02737 3HCDH_N: 3-hydroxyacy 32.3 1.4E+02 0.0031 28.3 6.6 43 119-161 2-44 (180)
331 PRK07097 gluconate 5-dehydroge 32.0 2.4E+02 0.0052 27.4 8.4 57 117-177 11-69 (265)
332 KOG3201 Uncharacterized conser 32.0 26 0.00055 34.1 1.5 47 116-162 30-77 (201)
333 PF00107 ADH_zinc_N: Zinc-bind 31.4 83 0.0018 27.0 4.5 31 126-157 2-32 (130)
334 COG1189 Predicted rRNA methyla 31.2 2.1E+02 0.0045 29.3 7.8 40 115-155 79-118 (245)
335 PRK06194 hypothetical protein; 31.0 1.5E+02 0.0032 29.1 6.8 57 117-177 7-65 (287)
336 KOG0024 Sorbitol dehydrogenase 30.6 99 0.0022 33.1 5.6 41 117-157 171-212 (354)
337 KOG0022 Alcohol dehydrogenase, 30.5 1E+02 0.0022 33.0 5.7 41 117-157 194-235 (375)
338 PRK05876 short chain dehydroge 30.2 2.5E+02 0.0054 27.8 8.3 57 117-177 7-65 (275)
339 PRK07062 short chain dehydroge 30.2 2.6E+02 0.0056 27.0 8.3 60 116-177 8-69 (265)
340 PRK12429 3-hydroxybutyrate deh 30.0 1.7E+02 0.0036 27.9 6.8 56 118-177 6-63 (258)
341 PF13561 adh_short_C2: Enoyl-( 29.4 37 0.00081 32.6 2.2 51 123-177 1-54 (241)
342 PF02254 TrkA_N: TrkA-N domain 29.2 89 0.0019 26.5 4.3 45 124-177 4-50 (116)
343 PRK09242 tropinone reductase; 28.6 3.1E+02 0.0067 26.3 8.5 59 117-177 10-70 (257)
344 PRK08862 short chain dehydroge 28.6 2.8E+02 0.0061 26.7 8.2 56 117-176 6-63 (227)
345 PRK05866 short chain dehydroge 28.5 2.8E+02 0.0061 27.8 8.4 57 117-177 41-99 (293)
346 PRK08217 fabG 3-ketoacyl-(acyl 28.3 3.2E+02 0.007 25.7 8.4 57 117-177 6-64 (253)
347 PRK07035 short chain dehydroge 28.1 3.2E+02 0.0069 26.1 8.4 57 117-177 9-67 (252)
348 PRK12384 sorbitol-6-phosphate 27.8 3E+02 0.0064 26.4 8.2 59 117-177 3-63 (259)
349 PLN02989 cinnamyl-alcohol dehy 27.8 1.9E+02 0.004 29.1 7.0 60 116-177 5-66 (325)
350 COG1062 AdhC Zn-dependent alco 27.6 1.1E+02 0.0025 32.8 5.5 41 117-157 187-228 (366)
351 KOG2352 Predicted spermine/spe 27.5 4.4E+02 0.0096 29.6 10.1 55 117-176 50-105 (482)
352 PRK07533 enoyl-(acyl carrier p 27.1 1E+02 0.0022 30.2 4.8 57 116-176 10-69 (258)
353 PRK07890 short chain dehydroge 26.9 3.2E+02 0.0069 26.1 8.2 57 117-177 6-64 (258)
354 TIGR03206 benzo_BadH 2-hydroxy 26.9 3.6E+02 0.0077 25.5 8.5 57 117-177 4-62 (250)
355 PLN02780 ketoreductase/ oxidor 26.9 2.3E+02 0.0051 29.0 7.6 58 117-176 54-113 (320)
356 PRK08945 putative oxoacyl-(acy 26.5 2.6E+02 0.0057 26.6 7.5 58 116-176 12-71 (247)
357 PRK08277 D-mannonate oxidoredu 26.4 3.3E+02 0.0072 26.5 8.3 57 117-177 11-69 (278)
358 PF12692 Methyltransf_17: S-ad 26.4 1.3E+02 0.0029 28.7 5.2 46 93-148 16-61 (160)
359 PRK06139 short chain dehydroge 26.3 2.9E+02 0.0062 28.6 8.2 57 117-177 8-66 (330)
360 PRK07478 short chain dehydroge 26.2 3.5E+02 0.0075 25.9 8.3 57 117-177 7-65 (254)
361 PRK05650 short chain dehydroge 26.1 3E+02 0.0065 26.8 7.9 56 118-177 2-59 (270)
362 PRK08993 2-deoxy-D-gluconate 3 25.8 1.7E+02 0.0037 28.2 6.1 55 117-177 11-67 (253)
363 PRK09424 pntA NAD(P) transhydr 25.6 1.5E+02 0.0031 33.4 6.2 42 116-157 165-206 (509)
364 PRK14045 1-aminocyclopropane-1 25.2 2.2E+02 0.0048 29.5 7.2 82 62-149 138-221 (329)
365 PRK05786 fabG 3-ketoacyl-(acyl 24.0 4.2E+02 0.009 24.9 8.3 56 117-177 6-63 (238)
366 KOG1122 tRNA and rRNA cytosine 24.0 1E+03 0.023 26.5 12.5 54 115-169 241-295 (460)
367 PLN02668 indole-3-acetate carb 23.9 49 0.0011 35.8 2.1 21 115-135 63-83 (386)
368 PRK05875 short chain dehydroge 23.7 4.1E+02 0.0089 25.8 8.4 59 117-177 8-68 (276)
369 PRK08703 short chain dehydroge 23.6 2.8E+02 0.0061 26.3 7.1 57 117-176 7-65 (239)
370 PRK08085 gluconate 5-dehydroge 23.6 4E+02 0.0086 25.5 8.2 57 117-177 10-68 (254)
371 COG1743 Adenine-specific DNA m 23.4 1.2E+02 0.0025 36.0 4.9 48 280-327 560-614 (875)
372 PRK07109 short chain dehydroge 23.2 3.9E+02 0.0086 27.5 8.5 57 117-177 9-67 (334)
373 PRK08643 acetoin reductase; Va 22.5 2.6E+02 0.0055 26.8 6.6 56 118-177 4-61 (256)
374 PRK12824 acetoacetyl-CoA reduc 22.4 3.3E+02 0.0072 25.6 7.3 57 118-177 4-62 (245)
375 PLN02253 xanthoxin dehydrogena 22.4 3.3E+02 0.0071 26.6 7.4 56 117-177 19-76 (280)
376 TIGR01712 phage_N6A_met phage 21.5 45 0.00098 32.1 1.1 9 244-252 64-72 (166)
377 PRK08293 3-hydroxybutyryl-CoA 21.2 2.5E+02 0.0055 28.3 6.5 43 118-160 5-47 (287)
378 PRK06113 7-alpha-hydroxysteroi 21.1 5.1E+02 0.011 24.8 8.4 58 116-177 11-70 (255)
379 PF02086 MethyltransfD12: D12 20.4 1.1E+02 0.0024 29.7 3.7 56 93-159 7-62 (260)
380 PRK06720 hypothetical protein; 20.2 5.9E+02 0.013 23.8 8.4 57 117-177 17-75 (169)
381 TIGR01963 PHB_DH 3-hydroxybuty 20.1 4.8E+02 0.01 24.6 7.9 56 118-177 3-60 (255)
382 PLN02662 cinnamyl-alcohol dehy 20.1 3.4E+02 0.0074 26.9 7.2 60 116-177 4-65 (322)
No 1
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=100.00 E-value=1.6e-81 Score=633.40 Aligned_cols=278 Identities=51% Similarity=0.945 Sum_probs=175.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHhhCCCccccccccCCCCcceecCChhhHHHHHHHHHhHhcCcE-EEecCCCeeCCCCCc
Q 010968 13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNR 91 (496)
Q Consensus 13 ~~~mHprN~y~~~~pDF~~La~~yP~f~~~v~~~~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~-~~Vp~g~LiPrvP~R 91 (496)
+..|||||+|++ +|||++|+++||+|++||..+.+|+.+|||+|++|+++||++||++||||+ |+||+|+|||+||+|
T Consensus 4 ~~~mHprN~~~~-~~dF~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R 82 (299)
T PF05971_consen 4 KKSMHPRNPYKD-RYDFAALAKKYPELKKFVIINKKGRVSIDFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNR 82 (299)
T ss_dssp ----------------------------------------S-TTSHHHHHHHHHHHHHHHH--------TTS----HHHH
T ss_pred cCCCCCCCCCCC-CCCHHHHHHhCcchhHhhEECCCCcEEEecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchh
Confidence 467999999985 789999999999999999998999999999999999999999999999998 599999999999999
Q ss_pred HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (496)
Q Consensus 92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~ 171 (496)
+||||||+|+|...... ....+++||||||+.|||++|+++.++|+|+|+|||+.+++.|++|+++|++|+++|++
T Consensus 83 ~nYi~~i~DlL~~~~~~----~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l 158 (299)
T PF05971_consen 83 LNYIHWIADLLASSNPG----IPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIEL 158 (299)
T ss_dssp HHHHHHHHHHHT--TCG----CS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred HHHHHHHHHHhhccccc----cccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEE
Confidence 99999999999864211 11368999999999999999999999999999999999999999999999559999999
Q ss_pred EEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCC
Q 010968 172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251 (496)
Q Consensus 172 v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY 251 (496)
+...... +||.++....+.|||+||||||
T Consensus 159 ~~~~~~~---------------------------------------------------~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 159 RKQKNPD---------------------------------------------------NIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp EE--ST----------------------------------------------------SSTTTSTT--S-EEEEEE----
T ss_pred EEcCCcc---------------------------------------------------ccchhhhcccceeeEEecCCcc
Confidence 9875211 2566666667899999999999
Q ss_pred ccCccccc-----------C------CCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHH
Q 010968 252 FESMEEAG-----------L------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI 314 (496)
Q Consensus 252 ~~s~eea~-----------~------eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~ 314 (496)
|++.+|+. . +|..+|+|+.+||+|+|||++||++||+||..+..++.|||+||||+++++.|+
T Consensus 188 y~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~ 267 (299)
T PF05971_consen 188 YSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLK 267 (299)
T ss_dssp -SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHH
T ss_pred ccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccCcccHHHHH
Confidence 99998752 1 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeeEEEEEecCCCeeEEEEEEeeCC
Q 010968 315 SKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVP 346 (496)
Q Consensus 315 ~~L~~~g~~~vk~~ed~qG~t~Rw~lAWsF~~ 346 (496)
+.|++.|+.+++++++.||+|.||+|||||.+
T Consensus 268 ~~L~~~~~~~~~~~e~~QG~t~rw~lAWsF~d 299 (299)
T PF05971_consen 268 KELKKLGATNYKVTEMCQGQTKRWILAWSFLD 299 (299)
T ss_dssp HHHHHTT-SEEEEEEEEETTEEEEEEEEES--
T ss_pred HHHHhcCCceEEEEEccCCceEEEEEEEeccC
Confidence 99999999999999999999999999999974
No 2
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=100.00 E-value=8e-76 Score=587.10 Aligned_cols=296 Identities=52% Similarity=0.908 Sum_probs=264.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHhhCCCccccccccCCCCcceecCChhhHHHHHHHHHhHhcCcEEEecCCCeeCCCCCcHh
Q 010968 14 PTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSN 93 (496)
Q Consensus 14 ~~mHprN~y~~~~pDF~~La~~yP~f~~~v~~~~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~n 93 (496)
..|||||+|+++||||+.||.+||+|++||..+.+||++|||+|++|+|+||++||++||||.++||+|+|||+||+|+|
T Consensus 5 k~mhpRn~Y~dkPPDfa~LaseyPsfK~fvq~~~ngRv~~Dfkd~~AvR~Lt~tLL~~Dfgl~veiP~grLcPtVPnR~n 84 (419)
T KOG2912|consen 5 KSMHPRNRYKDKPPDFAYLASEYPSFKQFVQINLNGRVSLDFKDPEAVRALTCTLLREDFGLSVEIPLGRLCPTVPNRLN 84 (419)
T ss_pred cccCCcccccCCCccHHHHHHhCccchhheEeccCCeEEeecCCHHHHHHHHHHHHhhccCceEecCccccCCCCccchh
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEE
Q 010968 94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK 173 (496)
Q Consensus 94 yi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~ 173 (496)
|||||+|||.+.. ..++...+++|||||+.||+++++++..+|.++|+||++..+..|+.|+..|+ ++++|.+++
T Consensus 85 YihwI~DLLss~q----~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~-lss~ikvV~ 159 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQ----SDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN-LSSLIKVVK 159 (419)
T ss_pred hHHHHHHHhhccc----CCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc-cccceeeEE
Confidence 9999999998751 11223346899999999999999999999999999999999999999999995 999999998
Q ss_pred ccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCcc
Q 010968 174 VDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFE 253 (496)
Q Consensus 174 ~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~ 253 (496)
.+. +.+ +.+. .+.. ..+..|||||||||||+
T Consensus 160 ~~~-~kt-------------------------------------ll~d---------~~~~--~~e~~ydFcMcNPPFfe 190 (419)
T KOG2912|consen 160 VEP-QKT-------------------------------------LLMD---------ALKE--ESEIIYDFCMCNPPFFE 190 (419)
T ss_pred ecc-hhh-------------------------------------cchh---------hhcc--CccceeeEEecCCchhh
Confidence 852 100 0000 0000 12456999999999999
Q ss_pred CcccccC---------CCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCee
Q 010968 254 SMEEAGL---------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI 324 (496)
Q Consensus 254 s~eea~~---------eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~ 324 (496)
..+|++. .|..+|+|+..||+..|||++|+.|||.+|..++++.+|||+|+||+++++.|++.|++.|++.
T Consensus 191 ~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~eggev~fvnRiitds~~lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~k 270 (419)
T KOG2912|consen 191 NQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSEGGEVSFVNRIITDSFVLRKRIRWYTCMLGKKSSLKPLISKLREQGVTK 270 (419)
T ss_pred chhhhccccccCCCCCCcccccccchhHHHhhccHHHHHHHHHHHHHHhhhcceEEeeecccccccHHHHHHHHHcCCce
Confidence 9877642 4677899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEEEeeCCccccccCCCcccccccc
Q 010968 325 VKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLS 363 (496)
Q Consensus 325 vk~~ed~qG~t~Rw~lAWsF~~~~~~~~~~~~~~~~~~~ 363 (496)
|++++++||+|.||+|||||++.+++.+.|++.+++..|
T Consensus 271 v~itel~qGkTkRW~LaWSF~~~v~~~~~ps~~rps~~s 309 (419)
T KOG2912|consen 271 VKITELVQGKTKRWGLAWSFMPIVRKIIAPSVVRPSVKS 309 (419)
T ss_pred EEEEEeeccccceeeEEeeecccccccCCchhcccchhh
Confidence 999999999999999999999999999999999988766
No 3
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=100.00 E-value=1.5e-73 Score=582.28 Aligned_cols=284 Identities=40% Similarity=0.732 Sum_probs=250.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHhhCCCccccccccCCCCcceecCChhhHHHHHHHHHhHhcCcE-EEecCCCeeCCCCCc
Q 010968 13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNR 91 (496)
Q Consensus 13 ~~~mHprN~y~~~~pDF~~La~~yP~f~~~v~~~~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~-~~Vp~g~LiPrvP~R 91 (496)
++.|||||+|+ ++|||++|+++||+|++||..+..|+.+|||+|++|+++||++||++|||++ |+||+|.|||+||+|
T Consensus 13 ~~~~h~rn~~~-~~~df~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R 91 (321)
T PRK11727 13 KPGLHPRNRHR-GRYDFAALIQSHPELKPFVILNPYGEQSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGR 91 (321)
T ss_pred ccCCCCCCcCC-CCCCHHHHHHhChhHHHHhccCCCCCeeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcH
Confidence 57899999998 5899999999999999999999999999999999999999999999999998 799999999999999
Q ss_pred HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (496)
Q Consensus 92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~ 171 (496)
++|||||+|+|........ ..+...++||||||+|||+++|+.+.++|+|+|+|||+.|+++|++|++.|+++.++|++
T Consensus 92 ~~Yi~~l~dll~~~~~~~~-p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~ 170 (321)
T PRK11727 92 ADYIHHLADLLAEDNGGVI-PRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRL 170 (321)
T ss_pred HHHHHHHHHHhcccccccC-CCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEE
Confidence 9999999999975321111 123567999999999999999999999999999999999999999999999338889998
Q ss_pred EEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCC
Q 010968 172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251 (496)
Q Consensus 172 v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY 251 (496)
+...... +++.++....++||+|||||||
T Consensus 171 ~~~~~~~---------------------------------------------------~i~~~i~~~~~~fDlivcNPPf 199 (321)
T PRK11727 171 RLQKDSK---------------------------------------------------AIFKGIIHKNERFDATLCNPPF 199 (321)
T ss_pred EEccchh---------------------------------------------------hhhhcccccCCceEEEEeCCCC
Confidence 7543210 1333333335789999999999
Q ss_pred ccCccccc-------------CCC--CcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHH
Q 010968 252 FESMEEAG-------------LNP--KTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISK 316 (496)
Q Consensus 252 ~~s~eea~-------------~eP--~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~ 316 (496)
|++.+++. .+| .+.++|...||+|+|||++||.+||++|..++.++||||+|+||+++++.|++.
T Consensus 200 ~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~ 279 (321)
T PRK11727 200 HASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRA 279 (321)
T ss_pred cCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHH
Confidence 99987631 111 467889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeeEEEEEecCCCeeEEEEEEeeCCccc
Q 010968 317 LRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPAR 349 (496)
Q Consensus 317 L~~~g~~~vk~~ed~qG~t~Rw~lAWsF~~~~~ 349 (496)
|++.|++.++++++.||++.||+|||||.+..+
T Consensus 280 L~~~~~~~~~~~e~~qG~~~~~~vaWsf~~~~~ 312 (321)
T PRK11727 280 LKKVGAVEVKTIEMAQGQKQSRFIAWTFLDDEQ 312 (321)
T ss_pred HHHcCCceEEEEEEeCCCeeeEEEEeecCCHHH
Confidence 999999999999999999999999999998753
No 4
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=100.00 E-value=1.2e-53 Score=413.20 Aligned_cols=260 Identities=36% Similarity=0.703 Sum_probs=233.2
Q ss_pred CCCccccccccCCCCcceecCChhhHHHHHHHHHhHhcCcE-EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCC
Q 010968 36 YPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNG 114 (496)
Q Consensus 36 yP~f~~~v~~~~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~-~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~ 114 (496)
.|+|..|+..+++|+.+|||.||.||+.|+|+||.+||+++ |+||+|.|||+||+|++|||+|+|||.+..- ...+
T Consensus 1 ~Pel~~f~~~~p~G~~siDFanp~AVk~LnKAlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g---~~~~ 77 (292)
T COG3129 1 MPELILFLRLTPAGRQSIDFANPLAVKALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSG---QIPG 77 (292)
T ss_pred CcceeeeeeccCCCceeeccCCHHHHHHHHHHHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCC---CCCc
Confidence 38999999999999999999999999999999999999997 9999999999999999999999999986521 1124
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
++.++||||+|+.|||++++.+.++|+++|+|||+.+++.|+.|+..|++++..|+++.....+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~---------------- 141 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD---------------- 141 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc----------------
Confidence 6789999999999999999999999999999999999999999999997799999998775321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCccccc---------------
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAG--------------- 259 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~--------------- 259 (496)
.||.+++...|.||++||||||+++.+++.
T Consensus 142 -----------------------------------~if~giig~nE~yd~tlCNPPFh~s~~da~~gsqrk~~nl~g~l~ 186 (292)
T COG3129 142 -----------------------------------AIFNGIIGKNERYDATLCNPPFHDSAADARAGSQRKRRNLGGELG 186 (292)
T ss_pred -----------------------------------ccccccccccceeeeEecCCCcchhHHHHHhcccCCccccccccc
Confidence 367777666789999999999999987641
Q ss_pred ---CCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCee
Q 010968 260 ---LNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTC 336 (496)
Q Consensus 260 ---~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~ 336 (496)
..|...++|...|++|+|||.+||.+|+++|..+.+++.|||++|.|.+++..|.+.|+..|...|.+.|+-||+..
T Consensus 187 ~~~~~~~lnfggq~qelwCegGe~afi~~mv~es~afakqv~WfttLisk~snlp~l~~~l~~~ga~~v~~~emaqgqK~ 266 (292)
T COG3129 187 PTNKLDALNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFTTLISKGSNLPPLYRALTDVGAVKVVKKEMAQGQKQ 266 (292)
T ss_pred ccccchhhhccCCceEEEecCcchhhHHHHHHHHHHHhhheehheeecCCcCCCHHHHHHHHHhcceeeeehhhcccccc
Confidence 02445678999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred EEEEEEeeCCccc
Q 010968 337 RWGLAWSFVPPAR 349 (496)
Q Consensus 337 Rw~lAWsF~~~~~ 349 (496)
...|||||.++.+
T Consensus 267 SrfIaWtf~d~eq 279 (292)
T COG3129 267 SRFIAWTFMDDEQ 279 (292)
T ss_pred ceeEEEEeeCHHH
Confidence 6679999987753
No 5
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-32 Score=271.57 Aligned_cols=194 Identities=21% Similarity=0.271 Sum_probs=165.2
Q ss_pred hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (496)
Q Consensus 70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~ 149 (496)
++|+|++++|.++||||| |.++..+.++...+... .. +|||||||||||++.|+.+.+.++|+|+|||+
T Consensus 76 ~~f~gl~~~v~~~vliPr-~dTe~Lve~~l~~~~~~---------~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~ 144 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPR-PDTELLVEAALALLLQL---------DK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISP 144 (280)
T ss_pred CeecceeeeeCCCceecC-CchHHHHHHHHHhhhhc---------CC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCH
Confidence 469999999999999999 78888887766333221 12 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (496)
Q Consensus 150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~ 229 (496)
+|+++|++|++.|+ + .++.++.+|
T Consensus 145 ~Al~~A~~Na~~~~-l-~~~~~~~~d------------------------------------------------------ 168 (280)
T COG2890 145 DALALARENAERNG-L-VRVLVVQSD------------------------------------------------------ 168 (280)
T ss_pred HHHHHHHHHHHHcC-C-ccEEEEeee------------------------------------------------------
Confidence 99999999999996 7 566666554
Q ss_pred CccccccCCCCcEEEEEECCCCccCccc------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 010968 230 PVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303 (496)
Q Consensus 230 ~il~~v~~~~e~FDfImcNPPY~~s~ee------a~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsm 303 (496)
+|.++ .++||+|||||||++.... ..+||..++.++.+ |++++++|+.++..+++++||+.++
T Consensus 169 -lf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~d-------Gl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 169 -LFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGD-------GLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred -ccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCcc-------HHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 23333 2489999999999998611 13689999988888 9999999999999999999999999
Q ss_pred eCCcCcHHHHHHHHHHcC-CeeEEEEEecCCCeeEEEEEEe
Q 010968 304 VGRKSNLKFLISKLRKVG-VTIVKTTEFVQGQTCRWGLAWS 343 (496)
Q Consensus 304 vGk~s~l~~L~~~L~~~g-~~~vk~~ed~qG~t~Rw~lAWs 343 (496)
+| ..+.+.+.+++.+.| +..+.+.+|..|+ .|.+++|.
T Consensus 238 ~g-~~q~~~v~~~~~~~~~~~~v~~~~d~~g~-~rv~~~~~ 276 (280)
T COG2890 238 IG-LTQGEAVKALFEDTGFFEIVETLKDLFGR-DRVVLAKL 276 (280)
T ss_pred EC-CCcHHHHHHHHHhcCCceEEEEEecCCCc-eEEEEEEe
Confidence 99 899999999999999 7889999999999 58877765
No 6
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.97 E-value=1.1e-29 Score=273.79 Aligned_cols=204 Identities=19% Similarity=0.220 Sum_probs=170.2
Q ss_pred hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCC-CCC------------CC--CCCCCCeEEEEcCchhHHHHHHH
Q 010968 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNI-IPT------------TS--RNGDKVKGFDIGTGANCIYPLLG 134 (496)
Q Consensus 70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~-i~~------------~~--~~~~~~~vLDIGTGSG~I~ilLa 134 (496)
++|||++|.|.++||||| |+|+..|+|+.+.+.... .+. .. ......+|||||||||||++.++
T Consensus 79 ~~F~g~~f~V~~~VLIPR-peTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 79 KEFYSREFIVNKHVLIPR-SDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred CEEcCcEEEeCCCcccCC-CcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 569999999999999999 899999999876553100 000 00 01123589999999999999999
Q ss_pred HHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCC
Q 010968 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS 214 (496)
Q Consensus 135 ~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~ 214 (496)
...++++|+|+|+|+.|+++|++|++.++ +.++|+++.+|...
T Consensus 158 ~~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~------------------------------------ 200 (506)
T PRK01544 158 CELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFE------------------------------------ 200 (506)
T ss_pred HHCCCCeEEEEECCHHHHHHHHHHHHHcC-Cccceeeeecchhh------------------------------------
Confidence 88899999999999999999999999985 87889988876321
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHH
Q 010968 215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRII 287 (496)
Q Consensus 215 ~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea-------~~eP~~al~G~~~Emv~~GGel~FI~riI 287 (496)
.+ ..++||+|||||||++..+.. .+||..|+.|+.+ |+.+|++|+
T Consensus 201 -------------------~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~d-------Gl~~~~~il 252 (506)
T PRK01544 201 -------------------NI--EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEED-------GLQAYFIIA 252 (506)
T ss_pred -------------------hC--cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCcc-------HHHHHHHHH
Confidence 11 135799999999999876532 3689999999998 999999999
Q ss_pred HHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEE
Q 010968 288 EDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA 341 (496)
Q Consensus 288 ~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lA 341 (496)
+++..+++++||+.+++| .++.+.+.+++.+.|+..+.+.+|++|+ .|.+++
T Consensus 253 ~~a~~~L~~gG~l~lEig-~~q~~~v~~~~~~~g~~~~~~~~D~~g~-~R~v~~ 304 (506)
T PRK01544 253 ENAKQFLKPNGKIILEIG-FKQEEAVTQIFLDHGYNIESVYKDLQGH-SRVILI 304 (506)
T ss_pred HHHHHhccCCCEEEEEEC-CchHHHHHHHHHhcCCCceEEEecCCCC-ceEEEe
Confidence 999999999999999999 8899999999999999999999999999 687655
No 7
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.97 E-value=3e-29 Score=251.53 Aligned_cols=197 Identities=22% Similarity=0.307 Sum_probs=167.4
Q ss_pred hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (496)
Q Consensus 70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~ 149 (496)
++|||++|.|++++|||| |+++.+++++.+.+... ....+|||+|||+|||++.++...++++++|+|+|+
T Consensus 78 ~~f~g~~f~v~~~vliPr-~ete~lv~~~l~~~~~~--------~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~ 148 (284)
T TIGR00536 78 KEFYGLEFFVNEHVLIPR-PETEELVEKALASLISQ--------NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP 148 (284)
T ss_pred ceEcCeEEEECCCCcCCC-CccHHHHHHHHHHhhhc--------CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH
Confidence 579999999999999999 88888888766544211 112589999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (496)
Q Consensus 150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~ 229 (496)
+|+++|++|++.++ +.++++++.+|...
T Consensus 149 ~al~~a~~n~~~~~-~~~~v~~~~~d~~~--------------------------------------------------- 176 (284)
T TIGR00536 149 DALAVAEENAEKNQ-LEHRVEFIQSNLFE--------------------------------------------------- 176 (284)
T ss_pred HHHHHHHHHHHHcC-CCCcEEEEECchhc---------------------------------------------------
Confidence 99999999999985 77789998887431
Q ss_pred CccccccCCCCcEEEEEECCCCccCccc------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 010968 230 PVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303 (496)
Q Consensus 230 ~il~~v~~~~e~FDfImcNPPY~~s~ee------a~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsm 303 (496)
.+ ...+||+|||||||++..+. ..++|..++.|+.+ |+.++++|+.++..+++++||+.++
T Consensus 177 ----~~--~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~d-------gl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 177 ----PL--AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDD-------GLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred ----cC--cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCc-------HHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 12379999999999987642 13689999999888 9999999999999999999999999
Q ss_pred eCCcCcHHHHHHHHH-HcCCeeEEEEEecCCCeeEEEEEE
Q 010968 304 VGRKSNLKFLISKLR-KVGVTIVKTTEFVQGQTCRWGLAW 342 (496)
Q Consensus 304 vGk~s~l~~L~~~L~-~~g~~~vk~~ed~qG~t~Rw~lAW 342 (496)
+| ..|...+.+++. +.|+..+.+.+|++|+ .|+++++
T Consensus 244 ~g-~~q~~~~~~~~~~~~~~~~~~~~~D~~g~-~R~~~~~ 281 (284)
T TIGR00536 244 IG-NWQQKSLKELLRIKFTWYDVENGRDLNGK-ERVVLGF 281 (284)
T ss_pred EC-ccHHHHHHHHHHhcCCCceeEEecCCCCC-ceEEEEE
Confidence 99 889999999998 4689899999999999 6998875
No 8
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.96 E-value=7e-29 Score=261.01 Aligned_cols=194 Identities=17% Similarity=0.175 Sum_probs=164.6
Q ss_pred hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (496)
Q Consensus 70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~ 149 (496)
++|||++|.|++++|||| |+++.++.++.+.+. ...++||||||||||++.++.+.++++++|+|+|+
T Consensus 218 ~~F~G~~f~V~p~vLIPR-peTE~LVe~aL~~l~-----------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~ 285 (423)
T PRK14966 218 REFYGRRFAVNPNVLIPR-PETEHLVEAVLARLP-----------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP 285 (423)
T ss_pred eeecCcEEEeCCCccCCC-ccHHHHHHHhhhccC-----------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH
Confidence 469999999999999999 777777766654432 12489999999999999999888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (496)
Q Consensus 150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~ 229 (496)
+|++.|++|++.++ . +|+++.+|..+.
T Consensus 286 ~ALe~AreNa~~~g-~--rV~fi~gDl~e~-------------------------------------------------- 312 (423)
T PRK14966 286 PALETARKNAADLG-A--RVEFAHGSWFDT-------------------------------------------------- 312 (423)
T ss_pred HHHHHHHHHHHHcC-C--cEEEEEcchhcc--------------------------------------------------
Confidence 99999999999874 3 789988874310
Q ss_pred CccccccCCCCcEEEEEECCCCccCcccc------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 010968 230 PVLVGVVRDGEQFDFCICNPPFFESMEEA------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303 (496)
Q Consensus 230 ~il~~v~~~~e~FDfImcNPPY~~s~eea------~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsm 303 (496)
.+ ...++||+|+|||||++..+.. .+||..|+.|+++ |++|+++|++++..+++++||+.++
T Consensus 313 -~l----~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~d-------GL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 313 -DM----PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSD-------GLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred -cc----ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCc-------hHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 00 0124799999999999875432 3689999999998 9999999999999999999999999
Q ss_pred eCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEE
Q 010968 304 VGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW 342 (496)
Q Consensus 304 vGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAW 342 (496)
+| .+|.+.+.+++++.|+..+.+.+|++|+ .|.++++
T Consensus 381 iG-~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~-dR~v~~~ 417 (423)
T PRK14966 381 HG-FDQGAAVRGVLAENGFSGVETLPDLAGL-DRVTLGK 417 (423)
T ss_pred EC-ccHHHHHHHHHHHCCCcEEEEEEcCCCC-cEEEEEE
Confidence 99 7999999999999999999999999999 6888875
No 9
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=228.59 Aligned_cols=204 Identities=17% Similarity=0.180 Sum_probs=161.1
Q ss_pred HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968 71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (496)
Q Consensus 71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~ 150 (496)
+|.++.+.+-+|||||| |+|+++++||.|.+.... -.+...+||+|||||||++.+++.++..+|+|+|+|+.
T Consensus 111 ~F~~l~l~~~pgVlIPR-pETEE~V~~Vid~~~~~~------~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~ 183 (328)
T KOG2904|consen 111 PFGDLDLVCKPGVLIPR-PETEEWVEAVIDALNNSE------HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA 183 (328)
T ss_pred ccCCceEEecCCeeecC-ccHHHHHHHHHHHHhhhh------hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHH
Confidence 57889999999999999 999999999999987531 11334799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968 151 ALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPP 230 (496)
Q Consensus 151 AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~ 230 (496)
|+.+|.+|++++. +.++|.+++-+....
T Consensus 184 Ai~La~eN~qr~~-l~g~i~v~~~~me~d--------------------------------------------------- 211 (328)
T KOG2904|consen 184 AIKLAKENAQRLK-LSGRIEVIHNIMESD--------------------------------------------------- 211 (328)
T ss_pred HHHHHHHHHHHHh-hcCceEEEecccccc---------------------------------------------------
Confidence 9999999999995 999999986642110
Q ss_pred ccccccCCCCcEEEEEECCCCccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 010968 231 VLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303 (496)
Q Consensus 231 il~~v~~~~e~FDfImcNPPY~~s~eea-------~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsm 303 (496)
.+.......+++|+++|||||+.+.+.. .+||+.|+.|+.+ |..++..+..-+.+.+.++|.+.++
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~e-------G~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLE-------GYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccc-------hhHHHHHHHHhhHhhcccCCeEEEE
Confidence 0000001247899999999999987743 2799999999998 9999999999999999999999888
Q ss_pred eCCcCcHHHHHHH----HHHcCCeeEEEEEecCCCeeEEEEE
Q 010968 304 VGRKSNLKFLISK----LRKVGVTIVKTTEFVQGQTCRWGLA 341 (496)
Q Consensus 304 vGk~s~l~~L~~~----L~~~g~~~vk~~ed~qG~t~Rw~lA 341 (496)
++...+-..+++. +.+--...+++..|..|+ .|+++.
T Consensus 285 ~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~-~Rfv~i 325 (328)
T KOG2904|consen 285 LVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGR-PRFVII 325 (328)
T ss_pred ecccccCcHHHHHHHHhchhhccchhheeecccCC-cceEEE
Confidence 8733333333332 223334567888999998 577654
No 10
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.94 E-value=1.5e-25 Score=220.55 Aligned_cols=195 Identities=23% Similarity=0.339 Sum_probs=165.3
Q ss_pred hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (496)
Q Consensus 70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~ 149 (496)
.+|||+++.+.+++|+|| |+++.++.|+.+.+.. ....+|||+|||+|+++..++...+.++++|+|+++
T Consensus 73 ~~f~~~~~~~~~~~lipr-~~te~l~~~~~~~~~~---------~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~ 142 (275)
T PRK09328 73 AEFWGLDFKVSPGVLIPR-PETEELVEWALEALLL---------KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISP 142 (275)
T ss_pred ceEcCcEEEECCCceeCC-CCcHHHHHHHHHhccc---------cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH
Confidence 569999999999999999 8888888888754432 134689999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (496)
Q Consensus 150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~ 229 (496)
.+++.|++|++ +. ...++.++.+|...
T Consensus 143 ~~l~~a~~n~~-~~-~~~~i~~~~~d~~~--------------------------------------------------- 169 (275)
T PRK09328 143 EALAVARRNAK-HG-LGARVEFLQGDWFE--------------------------------------------------- 169 (275)
T ss_pred HHHHHHHHHHH-hC-CCCcEEEEEccccC---------------------------------------------------
Confidence 99999999998 32 45678888876421
Q ss_pred CccccccCCCCcEEEEEECCCCccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 010968 230 PVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (496)
Q Consensus 230 ~il~~v~~~~e~FDfImcNPPY~~s~eea-------~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts 302 (496)
.+ ..++||+|+|||||++..+.. .++|..++.++.+ ++.++.++++++..+++++|++.+
T Consensus 170 ----~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~-------g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 170 ----PL--PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGED-------GLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred ----cC--CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCC-------HHHHHHHHHHHHHHhcccCCEEEE
Confidence 11 135799999999999865422 3689999998888 999999999999999999999999
Q ss_pred EeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEE
Q 010968 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW 342 (496)
Q Consensus 303 mvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAW 342 (496)
++| ..+.+.+.+++.+.|+..+.+.+|+.|+ .|+++++
T Consensus 237 e~g-~~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~~~~ 274 (275)
T PRK09328 237 EIG-YDQGEAVRALLAAAGFADVETRKDLAGR-DRVVLGR 274 (275)
T ss_pred EEC-chHHHHHHHHHHhCCCceeEEecCCCCC-ceEEEEE
Confidence 999 7788999999999999999999999998 6888875
No 11
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.93 E-value=2.5e-25 Score=223.91 Aligned_cols=178 Identities=19% Similarity=0.250 Sum_probs=147.2
Q ss_pred hHhcCcEEEecCCCeeCCCCCcHhHHHHHHH-HhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (496)
Q Consensus 70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~d-lL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs 148 (496)
++|+|++|.|++++|||| |.++..+.+... .+.. ....+|||+|||+|+|++.++...++++++|+|+|
T Consensus 85 ~~f~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis 154 (284)
T TIGR03533 85 AWFAGLEFYVDERVLIPR-SPIAELIEDGFAPWLEP---------EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS 154 (284)
T ss_pred CeecCcEEEECCCCccCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC
Confidence 468999999999999999 777777776543 2211 12358999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968 149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228 (496)
Q Consensus 149 ~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~ 228 (496)
+.|++.|++|++.++ +.++|+++.+|...
T Consensus 155 ~~al~~A~~n~~~~~-~~~~i~~~~~D~~~-------------------------------------------------- 183 (284)
T TIGR03533 155 PDALAVAEINIERHG-LEDRVTLIQSDLFA-------------------------------------------------- 183 (284)
T ss_pred HHHHHHHHHHHHHcC-CCCcEEEEECchhh--------------------------------------------------
Confidence 999999999999985 77789998887421
Q ss_pred CCccccccCCCCcEEEEEECCCCccCcccc------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 010968 229 PPVLVGVVRDGEQFDFCICNPPFFESMEEA------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (496)
Q Consensus 229 ~~il~~v~~~~e~FDfImcNPPY~~s~eea------~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts 302 (496)
.+ +.++||+|+|||||++..+.. .++|..++.|+.+ ++.++++++.++..+++++|++.+
T Consensus 184 -----~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~d-------Gl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 184 -----AL--PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGED-------GLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred -----cc--CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCc-------HHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11 134799999999999865421 3689999998888 999999999999999999999999
Q ss_pred EeCCcCcHHHHHHHHHHcCCee
Q 010968 303 MVGRKSNLKFLISKLRKVGVTI 324 (496)
Q Consensus 303 mvGk~s~l~~L~~~L~~~g~~~ 324 (496)
++| .++ +.+.+.+.+.|+..
T Consensus 250 e~g-~~~-~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 250 EVG-NSM-EALEEAYPDVPFTW 269 (284)
T ss_pred EEC-cCH-HHHHHHHHhCCCce
Confidence 999 455 78999999888753
No 12
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.93 E-value=1.7e-24 Score=220.43 Aligned_cols=178 Identities=18% Similarity=0.245 Sum_probs=144.7
Q ss_pred hHhcCcEEEecCCCeeCCCCCcHhHHHHHHH-HhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (496)
Q Consensus 70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~d-lL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs 148 (496)
++|||++|.|++++|||| |.++..+.++.. .+.. ....+|||+|||+|++++.++...++++|+|+|+|
T Consensus 97 ~~F~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis 166 (307)
T PRK11805 97 AWFCGLEFYVDERVLVPR-SPIAELIEDGFAPWLED---------PPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDIS 166 (307)
T ss_pred ceEcCcEEEECCCCcCCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCC
Confidence 569999999999999999 677777766543 2221 11258999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968 149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228 (496)
Q Consensus 149 ~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~ 228 (496)
+.|++.|++|++.++ +.++|+++.+|...
T Consensus 167 ~~al~~A~~n~~~~~-l~~~i~~~~~D~~~-------------------------------------------------- 195 (307)
T PRK11805 167 PDALAVAEINIERHG-LEDRVTLIESDLFA-------------------------------------------------- 195 (307)
T ss_pred HHHHHHHHHHHHHhC-CCCcEEEEECchhh--------------------------------------------------
Confidence 999999999999985 77789999887421
Q ss_pred CCccccccCCCCcEEEEEECCCCccCccc------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 010968 229 PPVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (496)
Q Consensus 229 ~~il~~v~~~~e~FDfImcNPPY~~s~ee------a~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts 302 (496)
.+ +.++||+|||||||+...+. ..++|..++.|+.+ |+.+++++++++..+++++|++.+
T Consensus 196 -----~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~d-------Gl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 196 -----AL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDD-------GLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred -----hC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCc-------hHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11 12479999999999986542 13689999999888 999999999999999999999999
Q ss_pred EeCCcCcHHHHHHHHHHcCCee
Q 010968 303 MVGRKSNLKFLISKLRKVGVTI 324 (496)
Q Consensus 303 mvGk~s~l~~L~~~L~~~g~~~ 324 (496)
++| .++ ..+.+.+.+.++..
T Consensus 262 E~g-~~~-~~~~~~~~~~~~~~ 281 (307)
T PRK11805 262 EVG-NSR-VHLEEAYPDVPFTW 281 (307)
T ss_pred EEC-cCH-HHHHHHHhhCCCEE
Confidence 999 444 45888888777643
No 13
>PLN02672 methionine S-methyltransferase
Probab=99.93 E-value=5.7e-25 Score=252.52 Aligned_cols=185 Identities=14% Similarity=0.090 Sum_probs=147.1
Q ss_pred hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (496)
Q Consensus 70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~ 149 (496)
++|||+++.|.|+||||| |+++.+++++.. . |.. ..+..+|||||||||||++.|+.+.+..+|+|+|||+
T Consensus 82 ~~F~~l~~~V~p~VLIPR-peTE~lve~L~~-~-----~~~--~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~ 152 (1082)
T PLN02672 82 RNRKKLTMMEIPSIFIPE-DWSFTFYEGLNR-H-----PDS--IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP 152 (1082)
T ss_pred EEecCCceeeCCCcccCc-hhHHHHHHHHHh-c-----ccc--cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH
Confidence 479999999999999999 888888877432 1 110 0123489999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHCCCC---------------CCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCC
Q 010968 150 VALEWAEKNVKSNPHI---------------SELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS 214 (496)
Q Consensus 150 ~AL~~A~~N~~~N~~L---------------~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~ 214 (496)
+|+++|++|++.|+ + .++|+++.+|..+
T Consensus 153 ~Al~~A~~Na~~n~-l~~~~~~~~~~~~~~l~~rV~f~~sDl~~------------------------------------ 195 (1082)
T PLN02672 153 RAVKVAWINLYLNA-LDDDGLPVYDGEGKTLLDRVEFYESDLLG------------------------------------ 195 (1082)
T ss_pred HHHHHHHHHHHHcC-cccccccccccccccccccEEEEECchhh------------------------------------
Confidence 99999999999873 3 2578888877431
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccc-------cCC---------CCcccCC---CCCcccc
Q 010968 215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLN---------PKTSCGG---TPEEMVC 275 (496)
Q Consensus 215 ~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea-------~~e---------P~~al~G---~~~Emv~ 275 (496)
.+.....+||+|||||||++..+.. .+| |..|+.| +.+
T Consensus 196 -------------------~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d---- 252 (1082)
T PLN02672 196 -------------------YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF---- 252 (1082)
T ss_pred -------------------hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc----
Confidence 1100123699999999999876532 133 4678866 477
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHH-HHHHHcCCeeEEE
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI-SKLRKVGVTIVKT 327 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~-~~L~~~g~~~vk~ 327 (496)
|+.||++|+.++..+++++||+.+++| ..|.+.+. +++++.|+..+.+
T Consensus 253 ---GL~~yr~i~~~a~~~L~pgG~l~lEiG-~~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 253 ---GLGLIARAVEEGISVIKPMGIMIFNMG-GRPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred ---HHHHHHHHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHHHCCCCeeEE
Confidence 999999999999999999999999999 99999999 6999999765443
No 14
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.92 E-value=8e-24 Score=209.61 Aligned_cols=186 Identities=14% Similarity=0.178 Sum_probs=148.4
Q ss_pred hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (496)
Q Consensus 70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~ 149 (496)
++|+|++|.+++++++|| |.++.++.++.+.+... ....++||+|||+|++++.++...++.+++|+|+|+
T Consensus 50 ~~f~g~~~~v~~~vf~pr-~~Te~Lv~~~l~~~~~~--------~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~ 120 (251)
T TIGR03704 50 AEFCGLRIAVDPGVFVPR-RRTEFLVDEAAALARPR--------SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP 120 (251)
T ss_pred CeEcCeEEEECCCCcCCC-ccHHHHHHHHHHhhccc--------CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH
Confidence 678999999999999999 67777777776654321 123489999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (496)
Q Consensus 150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~ 229 (496)
.|++.|++|++.|+ ++++.+|..+
T Consensus 121 ~al~~A~~N~~~~~-----~~~~~~D~~~--------------------------------------------------- 144 (251)
T TIGR03704 121 AAVRCARRNLADAG-----GTVHEGDLYD--------------------------------------------------- 144 (251)
T ss_pred HHHHHHHHHHHHcC-----CEEEEeechh---------------------------------------------------
Confidence 99999999999874 3567666431
Q ss_pred CccccccCCCCcEEEEEECCCCccCccc-------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 010968 230 PVLVGVVRDGEQFDFCICNPPFFESMEE-------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (496)
Q Consensus 230 ~il~~v~~~~e~FDfImcNPPY~~s~ee-------a~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts 302 (496)
.+... ..++||+|+|||||++..+. ..++|..++.|+.+ ++.++++|++.+..+++++||+.+
T Consensus 145 -~l~~~--~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~d-------gl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 145 -ALPTA--LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGAD-------GLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred -hcchh--cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCc-------HHHHHHHHHHHHHHhcCCCCEEEE
Confidence 00000 02469999999999976432 13688899998888 999999999999999999999998
Q ss_pred EeCCcCcHHHHHHHHHHcCCe-eEEEEEec
Q 010968 303 MVGRKSNLKFLISKLRKVGVT-IVKTTEFV 331 (496)
Q Consensus 303 mvGk~s~l~~L~~~L~~~g~~-~vk~~ed~ 331 (496)
+++ .++...+...|++.|+. .+...+|+
T Consensus 215 ~~~-~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 215 ETS-ERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred EEC-cchHHHHHHHHHHCCCCceeeEcccc
Confidence 888 78999999999999874 34444444
No 15
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.91 E-value=3e-23 Score=200.75 Aligned_cols=192 Identities=22% Similarity=0.292 Sum_probs=160.9
Q ss_pred hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (496)
Q Consensus 70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~ 149 (496)
.+|||..+.+++++++|+ |.+..++.++.+.+.. ...+|||+|||+|+++..++...++++++|+|+++
T Consensus 53 ~~~~~~~~~~~~~~~~p~-~~~~~l~~~~l~~~~~----------~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~ 121 (251)
T TIGR03534 53 REFYGLDFKVSPGVLIPR-PDTEELVEAALERLKK----------GPLRVLDLGTGSGAIALALAKERPDARVTAVDISP 121 (251)
T ss_pred ceEeceEEEECCCcccCC-CChHHHHHHHHHhccc----------CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH
Confidence 568999999999999999 7788888887766532 23589999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (496)
Q Consensus 150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~ 229 (496)
.+++.|++|++.++ +. +++++.+|...
T Consensus 122 ~~~~~a~~~~~~~~-~~-~~~~~~~d~~~--------------------------------------------------- 148 (251)
T TIGR03534 122 EALAVARKNAARLG-LD-NVTFLQSDWFE--------------------------------------------------- 148 (251)
T ss_pred HHHHHHHHHHHHcC-CC-eEEEEECchhc---------------------------------------------------
Confidence 99999999999885 64 68888776321
Q ss_pred CccccccCCCCcEEEEEECCCCccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 010968 230 PVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (496)
Q Consensus 230 ~il~~v~~~~e~FDfImcNPPY~~s~eea-------~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts 302 (496)
.. ..++||+|+|||||+...+.. .++|..++.++.+ ++.++..+++.+..+++++|++.+
T Consensus 149 ----~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~-------~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 149 ----PL--PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED-------GLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred ----cC--cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc-------HHHHHHHHHHHHHHhcccCCEEEE
Confidence 00 135799999999999754321 2478888888777 899999999999999999999999
Q ss_pred EeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEE
Q 010968 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGL 340 (496)
Q Consensus 303 mvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~l 340 (496)
+++ ..+.+.+.+.|++.|+..+.+.+|..|+ .|+++
T Consensus 216 ~~~-~~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~~ 251 (251)
T TIGR03534 216 EIG-YDQGEAVRALFEAAGFADVETRKDLAGK-DRVVL 251 (251)
T ss_pred EEC-ccHHHHHHHHHHhCCCCceEEEeCCCCC-cCeeC
Confidence 998 7889999999999999999999999888 57753
No 16
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=187.39 Aligned_cols=175 Identities=25% Similarity=0.306 Sum_probs=134.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
..+|||||||+|+++++|+.+.++++++||||++++.+.|++|++.|+ +++||+++++|..+.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~---------------- 107 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEF---------------- 107 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHh----------------
Confidence 579999999999999999999888999999999999999999999995 999999999986531
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
.... ...+||+||||||||..... .+|.....-+.+|..+
T Consensus 108 ------------------------------------~~~~--~~~~fD~Ii~NPPyf~~~~~--~~~~~~~~~Ar~e~~~ 147 (248)
T COG4123 108 ------------------------------------LKAL--VFASFDLIICNPPYFKQGSR--LNENPLRAIARHEITL 147 (248)
T ss_pred ------------------------------------hhcc--cccccCEEEeCCCCCCCccc--cCcChhhhhhhhhhcC
Confidence 1111 12479999999999998765 2233333334554444
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCe----eEEEEEEeeCCccccc
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT----CRWGLAWSFVPPARKI 351 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t----~Rw~lAWsF~~~~~~~ 351 (496)
. ...+++-+..+++++|.+ +||.+..++.++++.|++.++. .+.+.|++.+. .|-++.-.......-.
T Consensus 148 ~------le~~i~~a~~~lk~~G~l-~~V~r~erl~ei~~~l~~~~~~-~k~i~~V~p~~~k~A~~vLv~~~k~~~~~l~ 219 (248)
T COG4123 148 D------LEDLIRAAAKLLKPGGRL-AFVHRPERLAEIIELLKSYNLE-PKRIQFVYPKIGKAANRVLVEAIKGGKSGLK 219 (248)
T ss_pred C------HHHHHHHHHHHccCCCEE-EEEecHHHHHHHHHHHHhcCCC-ceEEEEecCCCCCcceEEEEEEecCCCCCce
Confidence 3 667888888899999886 6888899999999999999985 45566776652 6666666666554455
Q ss_pred cCCC
Q 010968 352 ISPH 355 (496)
Q Consensus 352 ~~~~ 355 (496)
+.|+
T Consensus 220 ~~pp 223 (248)
T COG4123 220 VLPP 223 (248)
T ss_pred ecCC
Confidence 5555
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.80 E-value=2.4e-18 Score=160.42 Aligned_cols=161 Identities=20% Similarity=0.265 Sum_probs=114.1
Q ss_pred cEEEecCCCeeCCCCCcHhHH-HHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHH
Q 010968 75 LNWWIPDGQLCPTVPNRSNYI-HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE 153 (496)
Q Consensus 75 L~~~Vp~g~LiPrvP~R~nyi-~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~ 153 (496)
++|..++|+.-|+ +.++- ..+.+.+... ...++||||||+|+|++.++.+.+.++++++|+|+.|++
T Consensus 2 ~~~~~~~gvFs~~---~~d~~t~lL~~~l~~~---------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~ 69 (170)
T PF05175_consen 2 LEFITHPGVFSPP---RLDAGTRLLLDNLPKH---------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALE 69 (170)
T ss_dssp EEEEEETTSTTTT---SHHHHHHHHHHHHHHH---------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHH
T ss_pred EEEEECCCeeCCC---CCCHHHHHHHHHHhhc---------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence 5788999999765 22211 1223333221 245899999999999999999889889999999999999
Q ss_pred HHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 010968 154 WAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLV 233 (496)
Q Consensus 154 ~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~ 233 (496)
.|++|++.|+ +++ ++++..|...
T Consensus 70 ~a~~n~~~n~-~~~-v~~~~~d~~~------------------------------------------------------- 92 (170)
T PF05175_consen 70 LAKRNAERNG-LEN-VEVVQSDLFE------------------------------------------------------- 92 (170)
T ss_dssp HHHHHHHHTT-CTT-EEEEESSTTT-------------------------------------------------------
T ss_pred HHHHHHHhcC-ccc-cccccccccc-------------------------------------------------------
Confidence 9999999995 776 9998877431
Q ss_pred cccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHH
Q 010968 234 GVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFL 313 (496)
Q Consensus 234 ~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L 313 (496)
.+ ..++||+|+|||||... ... +..+++++++++..+++++|++...+.+....+.+
T Consensus 93 ~~--~~~~fD~Iv~NPP~~~~--------------~~~-------~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~ 149 (170)
T PF05175_consen 93 AL--PDGKFDLIVSNPPFHAG--------------GDD-------GLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL 149 (170)
T ss_dssp TC--CTTCEEEEEE---SBTT--------------SHC-------HHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH
T ss_pred cc--cccceeEEEEccchhcc--------------ccc-------chhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH
Confidence 11 14689999999996532 222 67899999999999999999987777666666665
Q ss_pred HHHHHHcCCeeEEEEEec
Q 010968 314 ISKLRKVGVTIVKTTEFV 331 (496)
Q Consensus 314 ~~~L~~~g~~~vk~~ed~ 331 (496)
++.+ +..+++.+..
T Consensus 150 l~~~----f~~~~~~~~~ 163 (170)
T PF05175_consen 150 LKEL----FGDVEVVAKN 163 (170)
T ss_dssp HHHH----HS--EEEEEE
T ss_pred HHHh----cCCEEEEEEC
Confidence 3322 2345555543
No 18
>PRK14967 putative methyltransferase; Provisional
Probab=99.71 E-value=7.4e-16 Score=149.21 Aligned_cols=172 Identities=18% Similarity=0.236 Sum_probs=126.3
Q ss_pred cCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHH
Q 010968 73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (496)
Q Consensus 73 fGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL 152 (496)
=|+.+.+++++..|. +.+.....++..+ . + ....+|||+|||+|.++..++.. ...+++|+|+|+.++
T Consensus 5 ~~~~~~~~~g~~~p~-~ds~~l~~~l~~~-~---~------~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l 72 (223)
T PRK14967 5 PPDALLRAPGVYRPQ-EDTQLLADALAAE-G---L------GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAV 72 (223)
T ss_pred CCceeecCCCCcCCC-CcHHHHHHHHHhc-c---c------CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHH
Confidence 367899999999998 4444333333321 1 1 12358999999999998877654 335999999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 010968 153 EWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVL 232 (496)
Q Consensus 153 ~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il 232 (496)
+.|++|++.++ + +++++.+|...
T Consensus 73 ~~a~~n~~~~~-~--~~~~~~~d~~~------------------------------------------------------ 95 (223)
T PRK14967 73 RSARLNALLAG-V--DVDVRRGDWAR------------------------------------------------------ 95 (223)
T ss_pred HHHHHHHHHhC-C--eeEEEECchhh------------------------------------------------------
Confidence 99999999875 4 47777665321
Q ss_pred ccccCCCCcEEEEEECCCCccCcccc--cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcH
Q 010968 233 VGVVRDGEQFDFCICNPPFFESMEEA--GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNL 310 (496)
Q Consensus 233 ~~v~~~~e~FDfImcNPPY~~s~eea--~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l 310 (496)
.+ ..++||+|+|||||+...+.. ...|..++.++.+ +..++.++++++..+++++|.+.+......+.
T Consensus 96 -~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~ 165 (223)
T PRK14967 96 -AV--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPD-------GRAVLDRLCDAAPALLAPGGSLLLVQSELSGV 165 (223)
T ss_pred -hc--cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCc-------HHHHHHHHHHHHHHhcCCCcEEEEEEecccCH
Confidence 01 135799999999999765432 2345566666665 67889999999999999999887666655678
Q ss_pred HHHHHHHHHcCCe
Q 010968 311 KFLISKLRKVGVT 323 (496)
Q Consensus 311 ~~L~~~L~~~g~~ 323 (496)
..+++.+++.|+.
T Consensus 166 ~~~~~~l~~~g~~ 178 (223)
T PRK14967 166 ERTLTRLSEAGLD 178 (223)
T ss_pred HHHHHHHHHCCCC
Confidence 8999999998874
No 19
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.64 E-value=1.1e-14 Score=136.07 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=103.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~ 196 (496)
.++||+|||+|.++..++...+ +++|+|+|+++++.|++|++.++ + .++++.+|...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~------------------ 77 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN-V--GLDVVMTDLFK------------------ 77 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEccccc------------------
Confidence 5799999999999888776543 89999999999999999999885 4 47777665321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCC--CCcccCCCCCccc
Q 010968 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLN--PKTSCGGTPEEMV 274 (496)
Q Consensus 197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~e--P~~al~G~~~Emv 274 (496)
. ..++||+|+|||||++........ ...++.++.+
T Consensus 78 -------------------------------------~---~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~--- 114 (179)
T TIGR00537 78 -------------------------------------G---VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKD--- 114 (179)
T ss_pred -------------------------------------c---cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCc---
Confidence 0 024799999999998764432111 1223333333
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCee
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI 324 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~ 324 (496)
+...+.+++++...+++++|++.+......+...+.+.|++.|+..
T Consensus 115 ----~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~ 160 (179)
T TIGR00537 115 ----GRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRY 160 (179)
T ss_pred ----hHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeE
Confidence 4566889999999999999988777765667999999999999853
No 20
>PRK14968 putative methyltransferase; Provisional
Probab=99.60 E-value=6.3e-14 Score=129.61 Aligned_cols=146 Identities=22% Similarity=0.324 Sum_probs=107.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r-I~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..++||+|||+|.++..++.. +.+++|+|+|+++++.|++|+..++ +.++ +.++..|..+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~---------------- 84 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFE---------------- 84 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccc----------------
Confidence 358999999999998888765 7899999999999999999999885 6544 7777665321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCC--CcccCCCCCc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNP--KTSCGGTPEE 272 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP--~~al~G~~~E 272 (496)
.+ ....||+|++||||+........++ ..++.++..
T Consensus 85 ---------------------------------------~~--~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~- 122 (188)
T PRK14968 85 ---------------------------------------PF--RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKD- 122 (188)
T ss_pred ---------------------------------------cc--cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcC-
Confidence 11 1237999999999987542211111 112222222
Q ss_pred ccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEE
Q 010968 273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT 328 (496)
Q Consensus 273 mv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ 328 (496)
+...+..+++++..+++++|++...++-....+.+.+.+.+.|+..+.+.
T Consensus 123 ------~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 123 ------GREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred ------hHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 46678889999999999999988888766678899999999998655443
No 21
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.8e-14 Score=146.24 Aligned_cols=127 Identities=21% Similarity=0.207 Sum_probs=94.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~ 196 (496)
.+|||+|||.|.|++.|+...|..+++.+|+|..|++.|++|++.|+ ++.. +++.+|.
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~-~v~~s~~-------------------- 217 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-VENT-EVWASNL-------------------- 217 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-CCcc-EEEEecc--------------------
Confidence 48999999999999999999999999999999999999999999995 6654 5555543
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (496)
Q Consensus 197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~ 276 (496)
++++ .++||+|+|||||....+.
T Consensus 218 -----------------------------------~~~v---~~kfd~IisNPPfh~G~~v------------------- 240 (300)
T COG2813 218 -----------------------------------YEPV---EGKFDLIISNPPFHAGKAV------------------- 240 (300)
T ss_pred -----------------------------------cccc---cccccEEEeCCCccCCcch-------------------
Confidence 2233 2489999999999864221
Q ss_pred CchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEE
Q 010968 277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT 328 (496)
Q Consensus 277 GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ 328 (496)
......+||.++..+|+.+|-+. +|.. .......+|++. |.++.++
T Consensus 241 --~~~~~~~~i~~A~~~L~~gGeL~-iVan--~~l~y~~~L~~~-Fg~v~~l 286 (300)
T COG2813 241 --VHSLAQEIIAAAARHLKPGGELW-IVAN--RHLPYEKKLKEL-FGNVEVL 286 (300)
T ss_pred --hHHHHHHHHHHHHHhhccCCEEE-EEEc--CCCChHHHHHHh-cCCEEEE
Confidence 23446789999999999999764 4442 333334444443 3345544
No 22
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.58 E-value=1.2e-14 Score=124.96 Aligned_cols=115 Identities=18% Similarity=0.224 Sum_probs=85.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~ 196 (496)
.+|||+|||+|.+.+.++... ..+++|+|||+.++++|++|+..++ +.++++++.+|...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~------------------ 61 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARD------------------ 61 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHH------------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhh------------------
Confidence 479999999999988887765 7899999999999999999999985 88899999988431
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (496)
Q Consensus 197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~ 276 (496)
+... ...++||+|++||||+........
T Consensus 62 ----------------------------------~~~~--~~~~~~D~Iv~npP~~~~~~~~~~---------------- 89 (117)
T PF13659_consen 62 ----------------------------------LPEP--LPDGKFDLIVTNPPYGPRSGDKAA---------------- 89 (117)
T ss_dssp ----------------------------------HHHT--CTTT-EEEEEE--STTSBTT--------------------
T ss_pred ----------------------------------chhh--ccCceeEEEEECCCCccccccchh----------------
Confidence 0000 124689999999999865322110
Q ss_pred CchHHHHHHHHHHHHHhhcCCeEEEEEeC
Q 010968 277 GGERAFITRIIEDSVALKQTFRWYTSMVG 305 (496)
Q Consensus 277 GGel~FI~riI~eS~~ll~~~gwftsmvG 305 (496)
....+.++++.+..+++++|.+.+.++
T Consensus 90 --~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 90 --LRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --hHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 001567888888999999999876653
No 23
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.57 E-value=3.5e-14 Score=149.01 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=86.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC--CcEEEEEccCCCCCCcccccccCCcccc
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS--ELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~--~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
.+|||||||+|+|++.++.+.|..+|+++|+|+.|++.|++|++.|+ .+ .+++++..|..
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l----------------- 291 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNAL----------------- 291 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEcccc-----------------
Confidence 58999999999999999999999999999999999999999999884 43 36777766532
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
..+ ..++||+|+|||||+..... .
T Consensus 292 --------------------------------------~~~--~~~~fDlIlsNPPfh~~~~~------------~---- 315 (378)
T PRK15001 292 --------------------------------------SGV--EPFRFNAVLCNPPFHQQHAL------------T---- 315 (378)
T ss_pred --------------------------------------ccC--CCCCEEEEEECcCcccCccC------------C----
Confidence 111 13579999999999853110 0
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCC
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGR 306 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk 306 (496)
.....+|+.++...++++|++.+...+
T Consensus 316 -----~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 316 -----DNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred -----HHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 123568999999999999998766543
No 24
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.3e-13 Score=129.42 Aligned_cols=143 Identities=19% Similarity=0.288 Sum_probs=114.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
+..++|||||||++...|+... ++....++||+|.|++...+.++.|+ .+|.++..|.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~---~~~~~V~tdl------------------ 102 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR---VHIDVVRTDL------------------ 102 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC---CccceeehhH------------------
Confidence 4679999999999998888765 57889999999999999999999985 3467766653
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCccccc--CCCCcccCCCCCc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAG--LNPKTSCGGTPEE 272 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~--~eP~~al~G~~~E 272 (496)
+.++. .++.|+++-||||.+..++.. ..-..+.+|+.+
T Consensus 103 -------------------------------------~~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~- 142 (209)
T KOG3191|consen 103 -------------------------------------LSGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKD- 142 (209)
T ss_pred -------------------------------------Hhhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcc-
Confidence 22332 378999999999999866432 223345677777
Q ss_pred ccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeE
Q 010968 273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIV 325 (496)
Q Consensus 273 mv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~v 325 (496)
|.+.+.+++.....++.+.|||+...-+....+++++.+++.|+...
T Consensus 143 ------Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 143 ------GREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVR 189 (209)
T ss_pred ------hHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccccee
Confidence 78889999999999999999998777777778999999999988533
No 25
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.43 E-value=4.1e-12 Score=131.78 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=87.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~ 196 (496)
.+|||||||+|.++..++.+.++.+++++|+|+.|++.|++|++.|+ +. .+++.+|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-l~--~~~~~~D~~------------------- 255 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-LE--GEVFASNVF------------------- 255 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC--CEEEEcccc-------------------
Confidence 47999999999999999988888999999999999999999999985 64 344444321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (496)
Q Consensus 197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~ 276 (496)
..+ .++||+|+|||||+.....
T Consensus 256 ------------------------------------~~~---~~~fDlIvsNPPFH~g~~~------------------- 277 (342)
T PRK09489 256 ------------------------------------SDI---KGRFDMIISNPPFHDGIQT------------------- 277 (342)
T ss_pred ------------------------------------ccc---CCCccEEEECCCccCCccc-------------------
Confidence 111 3579999999999752110
Q ss_pred CchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHH
Q 010968 277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLIS 315 (496)
Q Consensus 277 GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~ 315 (496)
...-..++|.++..+++++|.+.....+.-..+.+++
T Consensus 278 --~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~ 314 (342)
T PRK09489 278 --SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLD 314 (342)
T ss_pred --cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHH
Confidence 2345688999999999999998655443333454444
No 26
>PHA03412 putative methyltransferase; Provisional
Probab=99.42 E-value=1.1e-12 Score=129.92 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=78.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHh---cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSV 192 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~---~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~ 192 (496)
..+|||+|||+|+|++.++.+. +..+|+|+|||+.|+++|++|+. ++.++.+|...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~-------------- 108 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALT-------------- 108 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhc--------------
Confidence 4589999999999999888764 35799999999999999998863 26677666421
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCc
Q 010968 193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE 272 (496)
Q Consensus 193 ~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~E 272 (496)
. . ..++||+|||||||+..... . ..+...
T Consensus 109 ---------------------------------------~-~---~~~~FDlIIsNPPY~~~~~~-----d--~~ar~~- 137 (241)
T PHA03412 109 ---------------------------------------T-E---FDTLFDMAISNPPFGKIKTS-----D--FKGKYT- 137 (241)
T ss_pred ---------------------------------------c-c---ccCCccEEEECCCCCCcccc-----c--cCCccc-
Confidence 0 0 13479999999999974210 0 022222
Q ss_pred ccccCchHHHHHHHHHHHHHhhcCCeE
Q 010968 273 MVCSGGERAFITRIIEDSVALKQTFRW 299 (496)
Q Consensus 273 mv~~GGel~FI~riI~eS~~ll~~~gw 299 (496)
+..+..++|+.+.+++..+++
T Consensus 138 ------g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 138 ------GAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ------ccHHHHHHHHHHHHHcCCCEE
Confidence 577888899999987777775
No 27
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=5.6e-12 Score=120.71 Aligned_cols=138 Identities=25% Similarity=0.315 Sum_probs=101.5
Q ss_pred CCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCC
Q 010968 86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPH 164 (496)
Q Consensus 86 PrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~ 164 (496)
+|++.-+.|+.|+.++.... +...|+|+|||+|.+++.. .+.+ .+|+|+|+|++|++.|++|+.++
T Consensus 25 ~Tp~~~Aa~il~~a~~~g~l---------~g~~V~DlG~GTG~La~ga--~~lGa~~V~~vdiD~~a~ei~r~N~~~l-- 91 (198)
T COG2263 25 RTPAPLAAYILWVAYLRGDL---------EGKTVLDLGAGTGILAIGA--ALLGASRVLAVDIDPEALEIARANAEEL-- 91 (198)
T ss_pred CCChHHHHHHHHHHHHcCCc---------CCCEEEEcCCCcCHHHHHH--HhcCCcEEEEEecCHHHHHHHHHHHHhh--
Confidence 34567799999999855431 3457999999999886544 4444 68999999999999999999984
Q ss_pred CCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEE
Q 010968 165 ISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDF 244 (496)
Q Consensus 165 L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDf 244 (496)
.++|+++..|+.. -..+||.
T Consensus 92 -~g~v~f~~~dv~~-----------------------------------------------------------~~~~~dt 111 (198)
T COG2263 92 -LGDVEFVVADVSD-----------------------------------------------------------FRGKFDT 111 (198)
T ss_pred -CCceEEEEcchhh-----------------------------------------------------------cCCccce
Confidence 3679998887531 1357899
Q ss_pred EEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCee
Q 010968 245 CICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI 324 (496)
Q Consensus 245 ImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~ 324 (496)
++.||||-..... . ...|+..-++-| .+. .-+++..+...+.+..++.|.+.
T Consensus 112 vimNPPFG~~~rh------------a--------Dr~Fl~~Ale~s-------~vV-YsiH~a~~~~f~~~~~~~~G~~v 163 (198)
T COG2263 112 VIMNPPFGSQRRH------------A--------DRPFLLKALEIS-------DVV-YSIHKAGSRDFVEKFAADLGGTV 163 (198)
T ss_pred EEECCCCcccccc------------C--------CHHHHHHHHHhh-------heE-EEeeccccHHHHHHHHHhcCCeE
Confidence 9999999875322 1 366777666544 233 34556778899999999999653
No 28
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.35 E-value=9.4e-12 Score=131.48 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=104.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~-~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+|||+|||+|++++.++. ....+|+++|+|+.|+++|++|++.|+ ++ ++++++.+|...
T Consensus 221 g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~---------------- 282 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFK---------------- 282 (396)
T ss_pred CCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHH----------------
Confidence 45899999999998765443 233589999999999999999999995 76 579999887431
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
++.......++||+|++|||||..... ++.
T Consensus 283 ------------------------------------~l~~~~~~~~~fDlVilDPP~f~~~k~-------~l~------- 312 (396)
T PRK15128 283 ------------------------------------LLRTYRDRGEKFDVIVMDPPKFVENKS-------QLM------- 312 (396)
T ss_pred ------------------------------------HHHHHHhcCCCCCEEEECCCCCCCChH-------HHH-------
Confidence 111111124579999999999975321 111
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEEeeCCccccccC
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIIS 353 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwft-smvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAWsF~~~~~~~~~ 353 (496)
+...-+..++..+..+++++|++. +-....-+.+.+.+.+.+.... +|+.-| +-+....++..++.
T Consensus 313 ---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~--------~~~~~~--~l~~~~~~~DhP~~ 379 (396)
T PRK15128 313 ---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAID--------AGRDVQ--FIEQFRQAADHPVI 379 (396)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHH--------cCCeEE--EEEEcCCCCCCCCC
Confidence 022337788888899999998753 3333344555565555543211 233222 22334445566666
Q ss_pred CCcccc
Q 010968 354 PHVAEK 359 (496)
Q Consensus 354 ~~~~~~ 359 (496)
++.+..
T Consensus 380 ~~~pe~ 385 (396)
T PRK15128 380 ATYPEG 385 (396)
T ss_pred CCCCCc
Confidence 655543
No 29
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.35 E-value=6.3e-12 Score=121.36 Aligned_cols=93 Identities=11% Similarity=0.001 Sum_probs=66.5
Q ss_pred HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968 71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (496)
Q Consensus 71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~ 150 (496)
.++|+++.+|++.-. | |.+.....-+.+.+... ....++||+|||+|++++.++++. ..+|+++|++++
T Consensus 19 ~~~g~~l~~~~~~~~-R-p~~d~v~e~l~~~l~~~--------~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~ 87 (199)
T PRK10909 19 QWRGRKLPVPDSPGL-R-PTTDRVRETLFNWLAPV--------IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA 87 (199)
T ss_pred ccCCCEeCCCCCCCc-C-cCCHHHHHHHHHHHhhh--------cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence 478999999875321 4 55555444344443221 123589999999999987554443 468999999999
Q ss_pred HHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 151 ALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 151 AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+++.|++|++.++ ++ +++++.+|.
T Consensus 88 a~~~a~~Nl~~~~-~~-~v~~~~~D~ 111 (199)
T PRK10909 88 VAQQLIKNLATLK-AG-NARVVNTNA 111 (199)
T ss_pred HHHHHHHHHHHhC-CC-cEEEEEchH
Confidence 9999999999985 64 688888763
No 30
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.33 E-value=5.3e-11 Score=122.21 Aligned_cols=143 Identities=20% Similarity=0.189 Sum_probs=102.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
...+||+|||+|.+.+.++ ..+.+++|+|+|+++++.|++|++.++ +.+ +.++.+|..+
T Consensus 183 g~~vLDp~cGtG~~lieaa--~~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~----------------- 241 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAG--LMGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATK----------------- 241 (329)
T ss_pred cCEEEECCCCCCHHHHHHH--HhCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhc-----------------
Confidence 3589999999998865543 457899999999999999999999885 665 7777776431
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
+ + ...++||+|+|||||....... ...
T Consensus 242 -----------------------------------l--~--~~~~~~D~Iv~dPPyg~~~~~~----------~~~---- 268 (329)
T TIGR01177 242 -----------------------------------L--P--LSSESVDAIATDPPYGRSTTAA----------GDG---- 268 (329)
T ss_pred -----------------------------------C--C--cccCCCCEEEECCCCcCccccc----------CCc----
Confidence 0 0 0135799999999997532211 011
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEe-cCCCeeEEE
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF-VQGQTCRWG 339 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed-~qG~t~Rw~ 339 (496)
...++.++++++.+.++++||+...+.... .+.+.++++|+ .+..... ++|.-.|.+
T Consensus 269 ---~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~-i~~~~~~~~h~sl~r~i 326 (329)
T TIGR01177 269 ---LESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR-VVKRFEVRVHRSLTRHI 326 (329)
T ss_pred ---hHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc-chheeeeeeecceEEEE
Confidence 236788999999999999999988876443 44566888898 6666553 555445554
No 31
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.33 E-value=1.3e-11 Score=138.74 Aligned_cols=145 Identities=21% Similarity=0.160 Sum_probs=105.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~-~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+|||+|||+|++++.++.. ...+|+++|+|+.|+++|++|++.|+ ++ ++++++.+|..+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~---------------- 600 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLA---------------- 600 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHH----------------
Confidence 358999999999998887753 23479999999999999999999996 76 689999887431
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
++... .++||+|||||||+...+... ... .
T Consensus 601 ------------------------------------~l~~~---~~~fDlIilDPP~f~~~~~~~----~~~----~--- 630 (702)
T PRK11783 601 ------------------------------------WLKEA---REQFDLIFIDPPTFSNSKRME----DSF----D--- 630 (702)
T ss_pred ------------------------------------HHHHc---CCCcCEEEECCCCCCCCCccc----hhh----h---
Confidence 11111 357999999999997533210 001 1
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCC
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQG 333 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG 333 (496)
....+..++..+..+++++|++.+... ..++....+.+.+.|+....+.+.-|+
T Consensus 631 ----~~~~y~~l~~~a~~lL~~gG~l~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~ 684 (702)
T PRK11783 631 ----VQRDHVALIKDAKRLLRPGGTLYFSNN-KRGFKMDEEGLAKLGLKAEEITAKTLP 684 (702)
T ss_pred ----HHHHHHHHHHHHHHHcCCCCEEEEEeC-CccCChhHHHHHhCCCeEEEEecCCCC
Confidence 344588899998999999998766555 556666688888888764444444444
No 32
>PHA03411 putative methyltransferase; Provisional
Probab=99.30 E-value=1.3e-11 Score=124.62 Aligned_cols=135 Identities=14% Similarity=0.042 Sum_probs=92.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
..+|||+|||+|.++..++.+.++.+++|+|+|+.|++.|++|.. +++++.+|...
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~~e----------------- 120 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDVFE----------------- 120 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECchhh-----------------
Confidence 358999999999998877776667899999999999999998741 36777776421
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
+. ..++||+|+|||||+....+.. ....+..|+..
T Consensus 121 -----------------------------------~~-----~~~kFDlIIsNPPF~~l~~~d~-~~~~~~~GG~~---- 155 (279)
T PHA03411 121 -----------------------------------FE-----SNEKFDVVISNPPFGKINTTDT-KDVFEYTGGEF---- 155 (279)
T ss_pred -----------------------------------hc-----ccCCCcEEEEcCCccccCchhh-hhhhhhccCcc----
Confidence 00 1357999999999997533221 22234444443
Q ss_pred cCchHHH--HHHHHHHHHHhhcCCeEEEEEeCCc------CcHHHHHHHHHHcCC
Q 010968 276 SGGERAF--ITRIIEDSVALKQTFRWYTSMVGRK------SNLKFLISKLRKVGV 322 (496)
Q Consensus 276 ~GGel~F--I~riI~eS~~ll~~~gwftsmvGk~------s~l~~L~~~L~~~g~ 322 (496)
+..+ +.+++.....++.+.|++.....-+ -.-.+..+.|++.|+
T Consensus 156 ---g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~ 207 (279)
T PHA03411 156 ---EFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGL 207 (279)
T ss_pred ---ccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCc
Confidence 3343 4678888888877777664433311 124567788998876
No 33
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=8.2e-11 Score=120.05 Aligned_cols=142 Identities=20% Similarity=0.234 Sum_probs=101.3
Q ss_pred CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168 (496)
Q Consensus 89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r 168 (496)
|+|.-.+.|+++++. .+.++||+|||||.+++..+ ++.-.+++|+||||.|++.|++|+++|+ +...
T Consensus 147 pTT~lcL~~Le~~~~-----------~g~~vlDvGcGSGILaIAa~-kLGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~ 213 (300)
T COG2264 147 PTTSLCLEALEKLLK-----------KGKTVLDVGCGSGILAIAAA-KLGAKKVVGVDIDPQAVEAARENARLNG-VELL 213 (300)
T ss_pred hhHHHHHHHHHHhhc-----------CCCEEEEecCChhHHHHHHH-HcCCceEEEecCCHHHHHHHHHHHHHcC-Cchh
Confidence 888999999998886 24689999999998865433 3444579999999999999999999996 5532
Q ss_pred EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 010968 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248 (496)
Q Consensus 169 I~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcN 248 (496)
+..-..+ .... ...++||+||||
T Consensus 214 ~~~~~~~-------------------------------------------------------~~~~--~~~~~~DvIVAN 236 (300)
T COG2264 214 VQAKGFL-------------------------------------------------------LLEV--PENGPFDVIVAN 236 (300)
T ss_pred hhccccc-------------------------------------------------------chhh--cccCcccEEEeh
Confidence 2110000 0111 123689999999
Q ss_pred CCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHHHHHHHcCCeeEEE
Q 010968 249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVKT 327 (496)
Q Consensus 249 PPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwft-smvGk~s~l~~L~~~L~~~g~~~vk~ 327 (496)
= . -..+.+|..+...+++++|++. +=+= .++.+.+.+.+.+.|+..+.+
T Consensus 237 I--L---------------------------A~vl~~La~~~~~~lkpgg~lIlSGIl-~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 237 I--L---------------------------AEVLVELAPDIKRLLKPGGRLILSGIL-EDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred h--h---------------------------HHHHHHHHHHHHHHcCCCceEEEEeeh-HhHHHHHHHHHHhCCCeEeEE
Confidence 5 1 1125678888888888888863 2232 567889999999999987766
Q ss_pred EEe
Q 010968 328 TEF 330 (496)
Q Consensus 328 ~ed 330 (496)
.+.
T Consensus 287 ~~~ 289 (300)
T COG2264 287 LER 289 (300)
T ss_pred Eec
Confidence 543
No 34
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.27 E-value=1.2e-10 Score=111.39 Aligned_cols=122 Identities=11% Similarity=0.145 Sum_probs=96.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
+.+|||||||+|.++..++...++.+|+|+|+++++++.|++|++.++ +++ ++++.+|..+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~~-i~~~~~d~~~----------------- 106 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-LKN-VTVVHGRAEE----------------- 106 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-CCC-EEEEeccHhh-----------------
Confidence 468999999999999999888888999999999999999999999985 755 9998876321
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
+ . ..++||+|+||- . .+
T Consensus 107 -----------------------------------~----~-~~~~fDlV~~~~----------------~---~~---- 123 (187)
T PRK00107 107 -----------------------------------F----G-QEEKFDVVTSRA----------------V---AS---- 123 (187)
T ss_pred -----------------------------------C----C-CCCCccEEEEcc----------------c---cC----
Confidence 0 0 135799999971 0 01
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEE
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKT 327 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~ 327 (496)
+..+++.+..+++++|++.++.+ ......+.++.+..|...-++
T Consensus 124 -------~~~~l~~~~~~LkpGG~lv~~~~-~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 124 -------LSDLVELCLPLLKPGGRFLALKG-RDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred -------HHHHHHHHHHhcCCCeEEEEEeC-CChHHHHHHHHHhcCceEeee
Confidence 35567777888999999988888 677788888888888753333
No 35
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.27 E-value=1.8e-10 Score=108.49 Aligned_cols=127 Identities=16% Similarity=0.080 Sum_probs=96.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
..++||||||+|.++..++...++.+++++|+++++++.|++|++.++ +. +|+++.++...
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~~-~i~~~~~d~~~----------------- 92 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-CG-NIDIIPGEAPI----------------- 92 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-CC-CeEEEecCchh-----------------
Confidence 458999999999999999888888999999999999999999999885 64 58887664210
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
.+ .++||+|+++-..
T Consensus 93 --------------------------------------~~---~~~~D~v~~~~~~------------------------ 107 (187)
T PRK08287 93 --------------------------------------EL---PGKADAIFIGGSG------------------------ 107 (187)
T ss_pred --------------------------------------hc---CcCCCEEEECCCc------------------------
Confidence 00 2469999985210
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEec
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV 331 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~ 331 (496)
..+..+++.+...++++|++....-...+...+.+.+++.|+..+.+.+..
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 158 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQ 158 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEE
Confidence 013456777778888999886654347788999999999998777665543
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.26 E-value=1.6e-10 Score=98.41 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=53.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
.+|||||||+|.+...++...++++++|+|+|+++++.|++|+...+ ..++|+++..|.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~ 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc
Confidence 58999999999999999887899999999999999999999997664 788999998874
No 37
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.22 E-value=2.9e-10 Score=112.42 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=86.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
..+|||+|||+|.+++.++. ....+++|+|+|+.+++.|++|++.|+ +.+++.+..+
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~--------------------- 176 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQG--------------------- 176 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccC---------------------
Confidence 46899999999988765543 333469999999999999999999985 5433332110
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
+.+||+|+||..
T Consensus 177 -------------------------------------------~~~fD~Vvani~------------------------- 188 (250)
T PRK00517 177 -------------------------------------------DLKADVIVANIL------------------------- 188 (250)
T ss_pred -------------------------------------------CCCcCEEEEcCc-------------------------
Confidence 126999999941
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEE
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTE 329 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~e 329 (496)
...+..++.+...+++++|++...--...+.+.+.+.+++.|+..+.+.+
T Consensus 189 ----~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 189 ----ANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred ----HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEE
Confidence 11256778888888899988754422256788999999999998776654
No 38
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.22 E-value=2.3e-10 Score=108.55 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=92.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
..++||||||+|.++..++...++.+|+|+|+|+.+++.|++|++.++ ++ +|+++.+|..+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~~-~i~~i~~d~~~----------------- 103 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-LN-NVEIVNGRAED----------------- 103 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-CC-CeEEEecchhh-----------------
Confidence 458999999999999888877778899999999999999999999885 64 59998886421
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
+ ...++||+|+||. + . +
T Consensus 104 -----------------------------------~-----~~~~~fD~I~s~~-~-~-----------------~---- 120 (181)
T TIGR00138 104 -----------------------------------F-----QHEEQFDVITSRA-L-A-----------------S---- 120 (181)
T ss_pred -----------------------------------c-----cccCCccEEEehh-h-h-----------------C----
Confidence 1 0135799999984 1 0 0
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHH---cCCeeEEEEEe
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK---VGVTIVKTTEF 330 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~---~g~~~vk~~ed 330 (496)
+..+++....+++++|.+....| ......+....+. .|+..++.-.+
T Consensus 121 -------~~~~~~~~~~~LkpgG~lvi~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 121 -------LNVLLELTLNLLKVGGYFLAYKG-KKYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred -------HHHHHHHHHHhcCCCCEEEEEcC-CCcHHHHHHHHHhhhhcCceEeecccc
Confidence 23344555667888998888877 6666666666555 68877765443
No 39
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.20 E-value=1.3e-10 Score=118.52 Aligned_cols=137 Identities=19% Similarity=0.267 Sum_probs=95.6
Q ss_pred CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168 (496)
Q Consensus 89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r 168 (496)
|+|.-.+.+++++.. ...+|||+|||||.++++. +++...+|+|+||||.|++.|++|++.|+ +.++
T Consensus 146 ~TT~lcl~~l~~~~~-----------~g~~vLDvG~GSGILaiaA-~klGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~ 212 (295)
T PF06325_consen 146 PTTRLCLELLEKYVK-----------PGKRVLDVGCGSGILAIAA-AKLGAKKVVAIDIDPLAVEAARENAELNG-VEDR 212 (295)
T ss_dssp HHHHHHHHHHHHHSS-----------TTSEEEEES-TTSHHHHHH-HHTTBSEEEEEESSCHHHHHHHHHHHHTT--TTC
T ss_pred HHHHHHHHHHHHhcc-----------CCCEEEEeCCcHHHHHHHH-HHcCCCeEEEecCCHHHHHHHHHHHHHcC-CCee
Confidence 667777888877753 2358999999999876543 34444589999999999999999999995 8887
Q ss_pred EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 010968 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248 (496)
Q Consensus 169 I~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcN 248 (496)
+.+.... +. ..++||+|++|
T Consensus 213 ~~v~~~~------------------------------------------------------~~------~~~~~dlvvAN 232 (295)
T PF06325_consen 213 IEVSLSE------------------------------------------------------DL------VEGKFDLVVAN 232 (295)
T ss_dssp EEESCTS------------------------------------------------------CT------CCS-EEEEEEE
T ss_pred EEEEEec------------------------------------------------------cc------ccccCCEEEEC
Confidence 7653100 00 13689999999
Q ss_pred CCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHHHHHHHcCCeeEEE
Q 010968 249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVKT 327 (496)
Q Consensus 249 PPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwft-smvGk~s~l~~L~~~L~~~g~~~vk~ 327 (496)
== ...+..|+.+...+++++|++. +=+= ..+...+++.+++ |+..++.
T Consensus 233 I~-----------------------------~~vL~~l~~~~~~~l~~~G~lIlSGIl-~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 233 IL-----------------------------ADVLLELAPDIASLLKPGGYLILSGIL-EEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp S------------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEE-GGGHHHHHHHHHT-TEEEEEE
T ss_pred CC-----------------------------HHHHHHHHHHHHHhhCCCCEEEEcccc-HHHHHHHHHHHHC-CCEEEEE
Confidence 51 2235667777777888887763 3333 5678899999977 9876665
Q ss_pred EE
Q 010968 328 TE 329 (496)
Q Consensus 328 ~e 329 (496)
.+
T Consensus 282 ~~ 283 (295)
T PF06325_consen 282 RE 283 (295)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 40
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.18 E-value=3.1e-10 Score=108.18 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=103.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..++||+|||+|.+++.++... +..+++++|+++++++.|++|++.++ +.++++++.+|..+
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d~~~---------------- 103 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGEAPE---------------- 103 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEechhh----------------
Confidence 4589999999999988877654 45799999999999999999999985 66778888776321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
.+.. ..+.||.|+++.. ..
T Consensus 104 ------------------------------------~l~~---~~~~~D~V~~~~~------------------~~---- 122 (198)
T PRK00377 104 ------------------------------------ILFT---INEKFDRIFIGGG------------------SE---- 122 (198)
T ss_pred ------------------------------------hHhh---cCCCCCEEEECCC------------------cc----
Confidence 1111 1247999998631 01
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEEee
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAWsF 344 (496)
-+..+++++...++++|.+....-...++..+...|++.|+ .+++++....+..++.-.+.|
T Consensus 123 -------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~ 184 (198)
T PRK00377 123 -------KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITEVIIAKGMKTKVGTAM 184 (198)
T ss_pred -------cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEEEehhhcccccCCcEe
Confidence 14567778778888999877666557788899999999998 677777665444343333333
No 41
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.18 E-value=3.9e-10 Score=120.33 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=68.5
Q ss_pred HhcCcEEEecCCCeeCCC-CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968 71 HDHGLNWWIPDGQLCPTV-PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (496)
Q Consensus 71 ~ffGL~~~Vp~g~LiPrv-P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~ 149 (496)
+++|+.|.+.++.+.-.- ...+..+.++.+.+.. ....++||+|||+|++++.|+... .+++|+|+|+
T Consensus 261 ~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~---------~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~ 329 (443)
T PRK13168 261 PEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP---------QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVE 329 (443)
T ss_pred EcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC---------CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCH
Confidence 356788888888886531 1123344444444431 123589999999999998887653 6899999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 150 VALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+|++.|++|++.|+ +. +++++.+|.
T Consensus 330 ~al~~A~~n~~~~~-~~-~v~~~~~d~ 354 (443)
T PRK13168 330 AMVERARENARRNG-LD-NVTFYHANL 354 (443)
T ss_pred HHHHHHHHHHHHcC-CC-ceEEEEeCh
Confidence 99999999999985 64 589988874
No 42
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.18 E-value=6.7e-10 Score=112.30 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=89.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
..+|||+|||+|.+++.++ +....+++|+|+|+.|++.|++|++.|+ +..++.++..+..
T Consensus 160 g~~VLDvGcGsG~lai~aa-~~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~~~~------------------ 219 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAAL-KLGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLIYLE------------------ 219 (288)
T ss_pred CCEEEEeCCChhHHHHHHH-HcCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecccc------------------
Confidence 3589999999998876655 3445689999999999999999999995 7777766544311
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
.. ..++||+|+||...
T Consensus 220 -------------------------------------~~---~~~~fDlVvan~~~------------------------ 235 (288)
T TIGR00406 220 -------------------------------------QP---IEGKADVIVANILA------------------------ 235 (288)
T ss_pred -------------------------------------cc---cCCCceEEEEecCH------------------------
Confidence 00 13579999999621
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEE-EeCCcCcHHHHHHHHHHcCCeeEEEEE
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYTS-MVGRKSNLKFLISKLRKVGVTIVKTTE 329 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwfts-mvGk~s~l~~L~~~L~~~g~~~vk~~e 329 (496)
..+.+++.+...+++++|++.. .+. .++...+++.+++. +..+.+.+
T Consensus 236 -----~~l~~ll~~~~~~LkpgG~li~sgi~-~~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 236 -----EVIKELYPQFSRLVKPGGWLILSGIL-ETQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred -----HHHHHHHHHHHHHcCCCcEEEEEeCc-HhHHHHHHHHHHcc-CceeeEec
Confidence 1245677777778888887644 455 67788899989876 76665543
No 43
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.13 E-value=1.5e-09 Score=116.06 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=64.8
Q ss_pred HhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968 69 LLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (496)
Q Consensus 69 L~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs 148 (496)
.+.|||.+|.++++++ + ++..+.+ +. + ....+|||||||+|+++..|+... +++++|+|+|
T Consensus 238 ~~~f~g~~~~v~~~v~-~----te~l~~~----~~---~------~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS 298 (475)
T PLN02336 238 YERVFGEGFVSTGGLE-T----TKEFVDK----LD---L------KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLS 298 (475)
T ss_pred HHHHhCCCCCCCchHH-H----HHHHHHh----cC---C------CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECC
Confidence 3568999999998887 1 2222222 11 1 124589999999999988887654 7899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 149 DVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 149 ~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+.+++.|++|+.. +..+++++.+|.
T Consensus 299 ~~~l~~A~~~~~~---~~~~v~~~~~d~ 323 (475)
T PLN02336 299 VNMISFALERAIG---RKCSVEFEVADC 323 (475)
T ss_pred HHHHHHHHHHhhc---CCCceEEEEcCc
Confidence 9999999999863 345788888774
No 44
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.12 E-value=6.4e-10 Score=105.93 Aligned_cols=135 Identities=10% Similarity=0.062 Sum_probs=96.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
..++||||||+|.+...++.+.|+.+|+|+|+++++++.|++|+..++ +. +|+++.+|...
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l~-ni~~i~~d~~~----------------- 77 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-LK-NLHVLCGDANE----------------- 77 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-CC-CEEEEccCHHH-----------------
Confidence 458999999999999999998999999999999999999999999885 65 79998887421
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCC--CccCcccccCCCCcccCCCCCcc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP--FFESMEEAGLNPKTSCGGTPEEM 273 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPP--Y~~s~eea~~eP~~al~G~~~Em 273 (496)
++.... +.+.||.+++|+| +... .+.++.
T Consensus 78 -----------------------------------~~~~~~-~~~~~d~v~~~~pdpw~k~----~h~~~r--------- 108 (194)
T TIGR00091 78 -----------------------------------LLDKFF-PDGSLSKVFLNFPDPWPKK----RHNKRR--------- 108 (194)
T ss_pred -----------------------------------HHHhhC-CCCceeEEEEECCCcCCCC----Cccccc---------
Confidence 010111 2347999999975 3221 111111
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcC-CeeE
Q 010968 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG-VTIV 325 (496)
Q Consensus 274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g-~~~v 325 (496)
.....++++...+++++|++.+..........+.+.+.+.+ +..+
T Consensus 109 -------~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 109 -------ITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred -------cCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 01255677777889999998776664555777888888876 4443
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.12 E-value=5.7e-10 Score=107.13 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=95.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
..+|||||||+|.+...|+...++.+++|+|+|+++++.|++|++.++ + .+++++.+|...
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~----------------- 101 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVE----------------- 101 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHH-----------------
Confidence 468999999999998888887888899999999999999999999885 5 468888776310
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCC--ccCcccccCCCCcccCCCCCcc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF--FESMEEAGLNPKTSCGGTPEEM 273 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY--~~s~eea~~eP~~al~G~~~Em 273 (496)
.+.... +.+.||.|++|.|. ..... ...
T Consensus 102 -----------------------------------~l~~~~-~~~~~D~V~~~~~~p~~~~~~------------~~~-- 131 (202)
T PRK00121 102 -----------------------------------VLLDMF-PDGSLDRIYLNFPDPWPKKRH------------HKR-- 131 (202)
T ss_pred -----------------------------------HHHHHc-CccccceEEEECCCCCCCccc------------ccc--
Confidence 010000 23579999998653 21100 000
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCC
Q 010968 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGV 322 (496)
Q Consensus 274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~ 322 (496)
......++++...+++++|++....-.......+.+.+++.|+
T Consensus 132 ------~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 132 ------RLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG 174 (202)
T ss_pred ------ccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence 0113556677777888999887766656778899999999986
No 46
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.10 E-value=1.3e-09 Score=103.26 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=85.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCe---------eEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWS---------FVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQES 186 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~---------v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~ 186 (496)
...+||-.||||-|.+-.+....+.. ++|+|||+++++.|++|++..+ +.+.|.+.+.|...
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~~~~D~~~-------- 99 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDFIQWDARE-------- 99 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEEEE--GGG--------
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEEEecchhh--------
Confidence 35899999999999877666555555 9999999999999999999985 88889998876431
Q ss_pred ccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCccc
Q 010968 187 LTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSC 266 (496)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al 266 (496)
+. ...+.+|+|||||||-.......
T Consensus 100 ---------------------------------------------l~---~~~~~~d~IvtnPPyG~r~~~~~------- 124 (179)
T PF01170_consen 100 ---------------------------------------------LP---LPDGSVDAIVTNPPYGRRLGSKK------- 124 (179)
T ss_dssp ---------------------------------------------GG---GTTSBSCEEEEE--STTSHCHHH-------
T ss_pred ---------------------------------------------cc---cccCCCCEEEECcchhhhccCHH-------
Confidence 11 12458999999999976432111
Q ss_pred CCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCe
Q 010968 267 GGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT 323 (496)
Q Consensus 267 ~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~ 323 (496)
+ ...||..++++..+.+.. |...++.....+. +.+...++.
T Consensus 125 ----~-------~~~ly~~~~~~~~~~l~~--~~v~l~~~~~~~~---~~~~~~~~~ 165 (179)
T PF01170_consen 125 ----D-------LEKLYRQFLRELKRVLKP--RAVFLTTSNRELE---KALGLKGWR 165 (179)
T ss_dssp ----H-------HHHHHHHHHHHHHCHSTT--CEEEEEESCCCHH---HHHTSTTSE
T ss_pred ----H-------HHHHHHHHHHHHHHHCCC--CEEEEEECCHHHH---HHhcchhhc
Confidence 1 367899999998886665 5555555454444 344444554
No 47
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=1.4e-09 Score=116.09 Aligned_cols=149 Identities=16% Similarity=0.152 Sum_probs=101.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+|||+|||+|..+..++... ++.+++|+|+++.+++.+++|+++++ +.+ |+++.+|...
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~~-v~~~~~D~~~---------------- 312 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LTN-IETKALDARK---------------- 312 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCe-EEEEeCCccc----------------
Confidence 3589999999999998888776 46799999999999999999999985 754 8888887431
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
+...+ .+.||+|++|||+..... ..++|..........+.
T Consensus 313 ------------------------------------~~~~~---~~~fD~Vl~D~Pcsg~G~-~~~~p~~~~~~~~~~~~ 352 (444)
T PRK14902 313 ------------------------------------VHEKF---AEKFDKILVDAPCSGLGV-IRRKPDIKYNKTKEDIE 352 (444)
T ss_pred ------------------------------------ccchh---cccCCEEEEcCCCCCCee-eccCcchhhcCCHHHHH
Confidence 00001 157999999999874322 23456555443332000
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC-CeeE
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG-VTIV 325 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwft---smvGk~s~l~~L~~~L~~~g-~~~v 325 (496)
.-......+++.+..+++++|.+. +-+....+...+...+++.+ +..+
T Consensus 353 ---~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~ 404 (444)
T PRK14902 353 ---SLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELV 404 (444)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEe
Confidence 012234678999999999998765 34554455555566677654 4433
No 48
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.08 E-value=8.4e-09 Score=99.49 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=50.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||||||+|.++..++... ++.+++|+|+++.+++.|++|++.++ + ++++++.+|.
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~ 105 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNA 105 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEech
Confidence 3589999999999988888765 56799999999999999999998774 5 4688887764
No 49
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.05 E-value=8.6e-10 Score=112.75 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=64.8
Q ss_pred CcEEEecCCCeeCCCCC-cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHH
Q 010968 74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (496)
Q Consensus 74 GL~~~Vp~g~LiPrvP~-R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL 152 (496)
|+.|.+.++....+-+. .+.++..+.+.+... .+.+|||+|||+|.+++.|+. .+.+|+|+|+++.|+
T Consensus 140 ~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~---------~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av 208 (315)
T PRK03522 140 GVPLFIRPQSFFQTNPAVAAQLYATARDWVREL---------PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAI 208 (315)
T ss_pred CEEEEECCCeeeecCHHHHHHHHHHHHHHHHhc---------CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHH
Confidence 45667777777664211 123333444444321 235899999999999888876 457999999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 010968 153 EWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 153 ~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+.|++|++.|+ + .+++++.+|.
T Consensus 209 ~~A~~n~~~~~-l-~~v~~~~~D~ 230 (315)
T PRK03522 209 ACAKQSAAELG-L-TNVQFQALDS 230 (315)
T ss_pred HHHHHHHHHcC-C-CceEEEEcCH
Confidence 99999999995 7 5799988874
No 50
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.04 E-value=2.5e-09 Score=97.20 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=52.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHH-hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 115 DKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~-~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
+..+|||+|||+|.+...|+.+ .++.+++|+|+|+++++.|+++++.++ +. +++++.+|..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~ 64 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIE 64 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTT
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehh
Confidence 3568999999999999888844 568899999999999999999999885 66 8999988754
No 51
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.99 E-value=5.2e-09 Score=111.38 Aligned_cols=145 Identities=15% Similarity=0.108 Sum_probs=100.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
..+|||+|||+|.....++...++.+++|+|+++.+++.+++|+++++ +. ++++.+|... +
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~~--~~~~~~D~~~--~-------------- 305 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-LK--ATVIVGDARD--P-------------- 305 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-CC--eEEEEcCccc--c--------------
Confidence 458999999999998888877766899999999999999999999985 54 6777776421 0
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
+ .++ ..++||.|++|||+...... ..+|..........+ .
T Consensus 306 ------------------------~---------~~~-----~~~~fD~Vl~D~Pcs~~G~~-~~~p~~~~~~~~~~l-~ 345 (427)
T PRK10901 306 ------------------------A---------QWW-----DGQPFDRILLDAPCSATGVI-RRHPDIKWLRRPEDI-A 345 (427)
T ss_pred ------------------------h---------hhc-----ccCCCCEEEECCCCCccccc-ccCccccccCCHHHH-H
Confidence 0 001 13579999999999754322 234444332222100 0
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG 321 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwft---smvGk~s~l~~L~~~L~~~g 321 (496)
. -.....++++.+..+++++|++. +.+....+...+...+++++
T Consensus 346 ~--l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~ 392 (427)
T PRK10901 346 A--LAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHP 392 (427)
T ss_pred H--HHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 0 01346789999999999998864 34555677777777887753
No 52
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.96 E-value=2e-08 Score=86.31 Aligned_cols=57 Identities=23% Similarity=0.158 Sum_probs=50.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
.++||||||+|..+..++.+.++.+++|+|+++.+++.|++|++.++ +. +++++..|
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~~ 77 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-VS-NIVIVEGD 77 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-CC-ceEEEecc
Confidence 48999999999999989888888999999999999999999999874 54 57777665
No 53
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.96 E-value=4e-08 Score=102.27 Aligned_cols=148 Identities=14% Similarity=-0.002 Sum_probs=97.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
..+|||||||+|.+...++...++.+++++|+|+.+++.|+++...+ +++++.+|..+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-----~i~~i~gD~e~----------------- 171 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIIEGDAED----------------- 171 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-----CCeEEeccHHh-----------------
Confidence 45899999999999888887777789999999999999999987533 36666665321
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
+ ++ .++.||+|+||..+....+
T Consensus 172 -----------------------------------l--p~--~~~sFDvVIs~~~L~~~~d------------------- 193 (340)
T PLN02490 172 -----------------------------------L--PF--PTDYADRYVSAGSIEYWPD------------------- 193 (340)
T ss_pred -----------------------------------C--CC--CCCceeEEEEcChhhhCCC-------------------
Confidence 0 00 2457999999876542111
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEe--C--------------CcCcHHHHHHHHHHcCCeeEEEEEecCCCe----
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYTSMV--G--------------RKSNLKFLISKLRKVGVTIVKTTEFVQGQT---- 335 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwftsmv--G--------------k~s~l~~L~~~L~~~g~~~vk~~ed~qG~t---- 335 (496)
..+++++...+++++|++...- . ...+.+++.+.|++.|+..+++ +++.+..
T Consensus 194 -------~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i-~~i~~~~~~~~ 265 (340)
T PLN02490 194 -------PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL-KRIGPKWYRGV 265 (340)
T ss_pred -------HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE-EEcChhhcccc
Confidence 1234555555666666653321 0 0235688999999999998876 4544442
Q ss_pred eEEEEEEeeCCccccc
Q 010968 336 CRWGLAWSFVPPARKI 351 (496)
Q Consensus 336 ~Rw~lAWsF~~~~~~~ 351 (496)
+|..+.|+..-.++|.
T Consensus 266 ~~~~~~~~~~v~~~k~ 281 (340)
T PLN02490 266 RRHGLIMGCSVTGVKP 281 (340)
T ss_pred ccccceeeEEEEEecc
Confidence 3456666655444443
No 54
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.95 E-value=3.3e-09 Score=111.24 Aligned_cols=90 Identities=10% Similarity=0.093 Sum_probs=62.6
Q ss_pred CcEEEecCCCeeCCCCC-cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHH
Q 010968 74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (496)
Q Consensus 74 GL~~~Vp~g~LiPrvP~-R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL 152 (496)
|+.|.++++...-+.+. ++.+..++.+.+... ...++||+|||+|.+++.++. .+.+|+|+|+++.|+
T Consensus 200 g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~---------~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av 268 (374)
T TIGR02085 200 DVPLVIRPQSFFQTNPKVAAQLYATARQWVREI---------PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAI 268 (374)
T ss_pred CEEEEECCCccccCCHHHHHHHHHHHHHHHHhc---------CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHH
Confidence 44556666655544221 122334444444311 124899999999999888874 457899999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 010968 153 EWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 153 ~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+.|++|++.|+ ++ +++++.+|.
T Consensus 269 ~~a~~N~~~~~-~~-~~~~~~~d~ 290 (374)
T TIGR02085 269 ACAQQSAQMLG-LD-NLSFAALDS 290 (374)
T ss_pred HHHHHHHHHcC-CC-cEEEEECCH
Confidence 99999999995 64 788888764
No 55
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.93 E-value=4.1e-09 Score=100.80 Aligned_cols=93 Identities=12% Similarity=-0.009 Sum_probs=65.0
Q ss_pred hcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHH
Q 010968 72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (496)
Q Consensus 72 ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~A 151 (496)
+-|..+..|++.-.. |...-.-+.+...+... -...++||++||||.+++.++.+. ...++++|+++.|
T Consensus 16 ~kg~~l~~p~~~~~r--pt~~~vrea~f~~l~~~--------~~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a 84 (189)
T TIGR00095 16 RGGRLLKLPPGGSTR--PTTRVVRELFFNILRPE--------IQGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKA 84 (189)
T ss_pred hCCcccCCCCCCCCC--CchHHHHHHHHHHHHHh--------cCCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHH
Confidence 345566667664433 33333333334444321 123589999999999988877653 2489999999999
Q ss_pred HHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 152 LEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 152 L~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
++.+++|++.|+ ++++++++..|.
T Consensus 85 ~~~~~~N~~~~~-~~~~~~~~~~D~ 108 (189)
T TIGR00095 85 NQTLKENLALLK-SGEQAEVVRNSA 108 (189)
T ss_pred HHHHHHHHHHhC-CcccEEEEehhH
Confidence 999999999995 777899988874
No 56
>PLN02244 tocopherol O-methyltransferase
Probab=98.91 E-value=7.3e-08 Score=99.81 Aligned_cols=85 Identities=19% Similarity=0.240 Sum_probs=62.3
Q ss_pred CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168 (496)
Q Consensus 89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r 168 (496)
..+..-+..+.+++....++.. ......+|||||||+|.+...|+.++ +.+|+|+|+|+.+++.|+++++.++ +.++
T Consensus 93 ~~~~aq~~~~~~~l~~~~~~~~-~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~ 169 (340)
T PLN02244 93 DHRQAQIRMIEESLAWAGVPDD-DEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG-LSDK 169 (340)
T ss_pred cHHHHHHHHHHHHHHhcCCCcc-cCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC-CCCc
Confidence 3444445566666654322110 01234689999999999988887655 7899999999999999999999885 7778
Q ss_pred EEEEEccC
Q 010968 169 IEIRKVDN 176 (496)
Q Consensus 169 I~~v~~d~ 176 (496)
|+++.+|.
T Consensus 170 v~~~~~D~ 177 (340)
T PLN02244 170 VSFQVADA 177 (340)
T ss_pred eEEEEcCc
Confidence 99988874
No 57
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.90 E-value=6.2e-09 Score=96.73 Aligned_cols=56 Identities=9% Similarity=0.063 Sum_probs=47.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..++||||||+|.+...++.+ +.+++|+|+|+.+++.+++|+... .+++++.+|..
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~ 69 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDAL 69 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchh
Confidence 358999999999998888765 579999999999999999998642 36888888743
No 58
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=1.9e-08 Score=99.45 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=50.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+.+|||+|||+|.++..|+.. +.+|+|+|+|+++++.|+++++..+ +..+++++.++.
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~ 102 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAA 102 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCH
Confidence 468999999999988777754 6799999999999999999998874 777888888763
No 59
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=1.1e-07 Score=91.47 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=51.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||||||+|.+...++...+ ..+|+++|+++++++.|++|++.++ +.++++++.+|.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~ 133 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDG 133 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCc
Confidence 35899999999999888877654 4699999999999999999999885 767789888774
No 60
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.87 E-value=3.4e-08 Score=105.07 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=99.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
..+|||+|||+|.....++...+..+++|+|+++++++.+++|+++++ +..++.+..+|...
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~----------------- 300 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRG----------------- 300 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecccccc-----------------
Confidence 358999999999999888877777899999999999999999999985 65333334443210
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
+ ..+ ...++||.|+++||+..+.-- ...|......+..++.
T Consensus 301 ------------------------~---------~~~----~~~~~fD~VllDaPcSg~G~~-~~~p~~~~~~~~~~~~- 341 (426)
T TIGR00563 301 ------------------------P---------SQW----AENEQFDRILLDAPCSATGVI-RRHPDIKWLRKPRDIA- 341 (426)
T ss_pred ------------------------c---------ccc----ccccccCEEEEcCCCCCCccc-ccCcchhhcCCHHHHH-
Confidence 0 000 123579999999998765332 2345544333322000
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG 321 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwft---smvGk~s~l~~L~~~L~~~g 321 (496)
.-...-.+|++++..+++++|.+. +-+....+-..+...|.+++
T Consensus 342 --~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 342 --ELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388 (426)
T ss_pred --HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 012235678899999899988763 44555667777777887764
No 61
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.86 E-value=1.1e-07 Score=94.42 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=47.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||||||+|.....++... +..+|+|+|+++.+++.|++|++.++ + .+++++.+|.
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~-~~v~~~~~d~ 137 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-Y-TNVEFRLGEI 137 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-C-CCEEEEEcch
Confidence 4589999999998766666544 45689999999999999999998874 5 3688877763
No 62
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.86 E-value=1.3e-08 Score=101.28 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=54.0
Q ss_pred HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (496)
Q Consensus 92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~ 171 (496)
.+.+.+|.+.+.. ....+|||||||+|.+...|+.+ ..+++|+|+|+.+++.+++++... .++++
T Consensus 15 ~~~~~~iv~~~~~---------~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~----~~v~i 79 (258)
T PRK14896 15 DRVVDRIVEYAED---------TDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAA----GNVEI 79 (258)
T ss_pred HHHHHHHHHhcCC---------CCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccC----CCEEE
Confidence 3556666665542 12358999999999998888766 468999999999999999988542 46899
Q ss_pred EEccC
Q 010968 172 RKVDN 176 (496)
Q Consensus 172 v~~d~ 176 (496)
+.+|.
T Consensus 80 i~~D~ 84 (258)
T PRK14896 80 IEGDA 84 (258)
T ss_pred EEecc
Confidence 88874
No 63
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.86 E-value=1.1e-07 Score=98.46 Aligned_cols=95 Identities=23% Similarity=0.405 Sum_probs=63.4
Q ss_pred EEEecCCCeeC---CCCCcHhHHHHHH-HHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHH
Q 010968 76 NWWIPDGQLCP---TVPNRSNYIHWIE-DLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (496)
Q Consensus 76 ~~~Vp~g~LiP---rvP~R~nyi~wI~-dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~A 151 (496)
.||-+.|-+-| --|.|..|+..+. ..+..... ........+|||||||+|.++..|+. .+.+|+|+|+++++
T Consensus 90 ~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~--~~~~~~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~ 165 (322)
T PLN02396 90 TWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPS--SAKPFEGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKN 165 (322)
T ss_pred HhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchh--hccCCCCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHH
Confidence 47766665544 2356777765432 22221100 00012345899999999998777763 57899999999999
Q ss_pred HHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 152 LEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 152 L~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
++.|+++++.++ +..+|+++.++
T Consensus 166 i~~Ar~~~~~~~-~~~~i~~~~~d 188 (322)
T PLN02396 166 VKIARLHADMDP-VTSTIEYLCTT 188 (322)
T ss_pred HHHHHHHHHhcC-cccceeEEecC
Confidence 999999987764 55678888775
No 64
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.86 E-value=6.2e-09 Score=104.48 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=45.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|||||||+|.+...|+.+. .+++|+|+|+++++.+++|... .+++++.+|..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~ 97 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDAL 97 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhh
Confidence 3589999999999998888764 3899999999999999987742 36889888753
No 65
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.85 E-value=2.9e-08 Score=97.94 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=51.2
Q ss_pred CCeEEEEcCchhHHHHHHHHH--hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~--~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||||||+|.....|+.. .++++++|+|+|+.|++.|++++..++ +..+|+++.+|.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~~v~~~~~d~ 118 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTPVDVIEGDI 118 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEeCCh
Confidence 358999999999987777663 478999999999999999999998874 667899987764
No 66
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.85 E-value=5.4e-08 Score=103.39 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=62.9
Q ss_pred CcEEEecCCCeeCCCCCcHhH---HHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968 74 GLNWWIPDGQLCPTVPNRSNY---IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (496)
Q Consensus 74 GL~~~Vp~g~LiPrvP~R~ny---i~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~ 150 (496)
|+.|.+.++..... |+... +.++.+.+.. ....++||+|||+|.+++.|+.. ..+|+|+|+++.
T Consensus 259 ~~~~~~~~~~F~Q~--N~~~~~~l~~~~~~~l~~---------~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~ 325 (431)
T TIGR00479 259 DLSFSLSARDFFQV--NSGQNEKLVDRALEALEL---------QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPE 325 (431)
T ss_pred CEEEEECCCceeec--CHHHHHHHHHHHHHHhcc---------CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHH
Confidence 44566666666553 33333 3333333321 12358999999999999888765 358999999999
Q ss_pred HHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 151 ALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 151 AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
|++.|++|++.|+ + .+|+++.+|.
T Consensus 326 av~~a~~n~~~~~-~-~nv~~~~~d~ 349 (431)
T TIGR00479 326 SVEKAQQNAELNG-I-ANVEFLAGTL 349 (431)
T ss_pred HHHHHHHHHHHhC-C-CceEEEeCCH
Confidence 9999999999985 6 4689988874
No 67
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.83 E-value=4e-08 Score=98.31 Aligned_cols=143 Identities=10% Similarity=0.067 Sum_probs=92.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+|||+|||+|.....++.... ...|+|+|+++.+++.+++|+++++ +. .|+++..|...
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~---------------- 133 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-VL-NVAVTNFDGRV---------------- 133 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-CC-cEEEecCCHHH----------------
Confidence 35899999999999888887664 3589999999999999999999985 64 47777665321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
+.. ..+.||.|++|||+....-- .++|.....-+...+
T Consensus 134 -------------------------------------~~~---~~~~fD~Vl~D~Pcsg~G~~-~~~p~~~~~~~~~~~- 171 (264)
T TIGR00446 134 -------------------------------------FGA---AVPKFDAILLDAPCSGEGVI-RKDPSRKKNWSEEDI- 171 (264)
T ss_pred -------------------------------------hhh---hccCCCEEEEcCCCCCCccc-ccChhhhhcCCHHHH-
Confidence 000 12459999999998743221 234544322111100
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEE---EeCCcCcHHHHHHHHHHc
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWYTS---MVGRKSNLKFLISKLRKV 320 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwfts---mvGk~s~l~~L~~~L~~~ 320 (496)
.. =...-.+|++.+..+++++|++.+ -+....+-.-+...|++.
T Consensus 172 ~~--l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 172 QE--ISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred HH--HHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence 00 012345689999999989887633 344344444445555554
No 68
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.82 E-value=6.7e-08 Score=91.77 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=50.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
..+|||+|||+|.++..++...++.+++|+|+|+++++.|++|++.++ +. +|+++.+|
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~~-~v~~~~~d 98 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-VK-NVEVIEGS 98 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-CeEEEECc
Confidence 358999999999998888766677899999999999999999999885 53 58888776
No 69
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.82 E-value=2.9e-07 Score=91.93 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=47.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHC-CCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N-~~L~~rI~~v~~d~ 176 (496)
..+|||||||+|.+...|+... +..+|+|+|+|++|++.|+++.... .....+|+++.+|.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~ 136 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA 136 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc
Confidence 4589999999999887777665 4579999999999999998875421 01234688888764
No 70
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.82 E-value=5.6e-08 Score=92.79 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=45.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
+.+|||+|||+|.++..|+. .+++|+|+|+|+.|++.|+++++.++ +. +.+...|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~--~g~~V~~iD~s~~~l~~a~~~~~~~~-~~--v~~~~~d 85 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL--AGYDVRAWDHNPASIASVLDMKAREN-LP--LRTDAYD 85 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHHHhC-CC--ceeEecc
Confidence 46899999999999888875 36899999999999999999998774 53 5554444
No 71
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.82 E-value=2e-08 Score=102.46 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=49.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
...|||||||+|.+...|+.. ..+++|+|+|+++++.+++|+..++ +.++++++.+|.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Da 94 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDA 94 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCH
Confidence 358999999999998777654 4589999999999999999998764 557899998874
No 72
>PRK04457 spermidine synthase; Provisional
Probab=98.81 E-value=1.2e-07 Score=95.01 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=59.2
Q ss_pred hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 010968 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR 172 (496)
Q Consensus 93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v 172 (496)
.|..++...+... ..+.+|||||||+|.++..++...|+.+++++|+|+++++.|+++...++ ...+++++
T Consensus 52 ~y~~~m~~~l~~~--------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~ 122 (262)
T PRK04457 52 AYTRAMMGFLLFN--------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVI 122 (262)
T ss_pred HHHHHHHHHHhcC--------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEE
Confidence 4777665443321 13458999999999999888888899999999999999999999987653 45689998
Q ss_pred EccC
Q 010968 173 KVDN 176 (496)
Q Consensus 173 ~~d~ 176 (496)
.+|.
T Consensus 123 ~~Da 126 (262)
T PRK04457 123 EADG 126 (262)
T ss_pred ECCH
Confidence 8874
No 73
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.78 E-value=7.3e-08 Score=108.78 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=49.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHh----c--------------------------------------CCeeEEecCcHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASL----L--------------------------------------GWSFVGSDMTDVALE 153 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~----~--------------------------------------~~~v~avDIs~~AL~ 153 (496)
...++|-+||||-|.+-.+... | ..+++|+|||++|++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 4689999999999876654310 1 136999999999999
Q ss_pred HHHHHHHHCCCCCCcEEEEEccCC
Q 010968 154 WAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 154 ~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.|++|++.++ +.++|+++.+|..
T Consensus 271 ~A~~N~~~~g-~~~~i~~~~~D~~ 293 (702)
T PRK11783 271 AARKNARRAG-VAELITFEVKDVA 293 (702)
T ss_pred HHHHHHHHcC-CCcceEEEeCChh
Confidence 9999999995 8888999988753
No 74
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.77 E-value=1.1e-07 Score=92.12 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=98.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+|||||||+|.....++.... ..+|+|+|+++. ++ +. .|+++++|.....
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~-~~-~v~~i~~D~~~~~-------------- 104 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP-IV-GVDFLQGDFRDEL-------------- 104 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC-CC-CcEEEecCCCChH--------------
Confidence 35899999999999877777653 469999999981 21 22 3788888753200
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECC-CCccCcccccCCCCcccCCCCCcc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP-PFFESMEEAGLNPKTSCGGTPEEM 273 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNP-PY~~s~eea~~eP~~al~G~~~Em 273 (496)
+ + ..+.... ..+.||+|+||+ |++... |.... ..
T Consensus 105 ---~------~-----------------------~~i~~~~--~~~~~D~V~S~~~~~~~g~------~~~d~---~~-- 139 (209)
T PRK11188 105 ---V------L-----------------------KALLERV--GDSKVQVVMSDMAPNMSGT------PAVDI---PR-- 139 (209)
T ss_pred ---H------H-----------------------HHHHHHh--CCCCCCEEecCCCCccCCC------hHHHH---HH--
Confidence 0 0 0011111 246799999998 666321 11000 00
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCe---eEEEEEEee
Q 010968 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSF 344 (496)
Q Consensus 274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t---~Rw~lAWsF 344 (496)
-..++..+++++..+++++|+|.+-+-....+..+...+++ .+..++++++.+++. -.++++-.|
T Consensus 140 -----~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~~v~~~Kp~ssr~~s~e~~~~~~~~ 207 (209)
T PRK11188 140 -----AMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIVATGR 207 (209)
T ss_pred -----HHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-CceEEEEECCccccccCceeEEEeecc
Confidence 12235678899999999999998755557777777776655 578899999999985 345555433
No 75
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=6.3e-08 Score=103.57 Aligned_cols=145 Identities=15% Similarity=0.136 Sum_probs=98.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+|||+|||+|.....++... ++.+|+|+|+++.+++.+++|+++.+ +. .|+++..|...
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~~-~v~~~~~Da~~---------------- 299 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-LS-SIEIKIADAER---------------- 299 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-eEEEEECchhh----------------
Confidence 3589999999999988888765 35799999999999999999999985 64 48887776321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
+... ..++||.|+|+||+...... ..+|..-...+...+
T Consensus 300 -------------------------------------l~~~--~~~~fD~Vl~DaPCsg~G~~-~~~p~~~~~~~~~~~- 338 (431)
T PRK14903 300 -------------------------------------LTEY--VQDTFDRILVDAPCTSLGTA-RNHPEVLRRVNKEDF- 338 (431)
T ss_pred -------------------------------------hhhh--hhccCCEEEECCCCCCCccc-cCChHHHHhCCHHHH-
Confidence 0000 13579999999999754332 233433222111100
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~g 321 (496)
.+=..+-.+|++.+..+++++|.+ |+-+....+-..+...|+++.
T Consensus 339 --~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~ 386 (431)
T PRK14903 339 --KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK 386 (431)
T ss_pred --HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCC
Confidence 001235688999999999998876 445555666666777777653
No 76
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.76 E-value=1.8e-07 Score=91.39 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=50.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||||||+|.....++..+ |+++++|+|+|+.+++.|+++++..+ ...+++++.+|.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~v~~~~~d~ 115 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDI 115 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECCh
Confidence 3589999999999888787754 68999999999999999999998763 556788888774
No 77
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.72 E-value=2.9e-07 Score=88.42 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=52.0
Q ss_pred eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+|||||||+|..+..++...++.+++|+|+|+++++.|+++++..+ +.++|+++..|.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~ 59 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDS 59 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEeccc
Confidence 6999999999988888887778899999999999999999998885 888899988764
No 78
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.72 E-value=1.7e-07 Score=100.06 Aligned_cols=147 Identities=14% Similarity=0.050 Sum_probs=99.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+|||+|||+|.....++.... ..+|+|+|+++.+++.+++|+++++ +. .|+++..|....
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~~-~v~~~~~D~~~~--------------- 315 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-LK-SIKILAADSRNL--------------- 315 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-CC-eEEEEeCChhhc---------------
Confidence 35899999999999888887654 4689999999999999999999985 65 488888774310
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
+ ..+ . ...++||.|+++||...... ..++|.....-....+
T Consensus 316 -------------------------~---------~~~-~--~~~~~fD~Vl~DaPCSg~G~-~~r~p~~~~~~~~~~~- 356 (434)
T PRK14901 316 -------------------------L---------ELK-P--QWRGYFDRILLDAPCSGLGT-LHRHPDARWRQTPEKI- 356 (434)
T ss_pred -------------------------c---------ccc-c--cccccCCEEEEeCCCCcccc-cccCcchhhhCCHHHH-
Confidence 0 000 0 01357999999999743211 1234443222111100
Q ss_pred ccCch-HHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 010968 275 CSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (496)
Q Consensus 275 ~~GGe-l~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~g 321 (496)
-+ ...-.+|++++..+++++|.+ |+.+....+...+...|++++
T Consensus 357 ---~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 357 ---QELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 01 122467899999988888865 356776778888888888864
No 79
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.72 E-value=3.1e-07 Score=86.66 Aligned_cols=150 Identities=11% Similarity=0.087 Sum_probs=97.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+|||||||+|.+...++.+. +..+++|+|+++.+ . . ..++++..|..+.
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~----~-~~i~~~~~d~~~~--------------- 84 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P----I-ENVDFIRGDFTDE--------------- 84 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c----C-CCceEEEeeCCCh---------------
Confidence 4589999999999988887766 45789999999854 1 1 1366666664310
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECC--CCccCcccccCCCCcccCCCCCc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP--PFFESMEEAGLNPKTSCGGTPEE 272 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNP--PY~~s~eea~~eP~~al~G~~~E 272 (496)
...+ .+.... ..++||+|+||+ ||... +... ...
T Consensus 85 ------------------------~~~~-------~l~~~~--~~~~~D~V~~~~~~~~~g~-------~~~~---~~~- 120 (188)
T TIGR00438 85 ------------------------EVLN-------KIRERV--GDDKVDVVMSDAAPNISGY-------WDID---HLR- 120 (188)
T ss_pred ------------------------hHHH-------HHHHHh--CCCCccEEEcCCCCCCCCC-------cccc---HHH-
Confidence 0000 000001 245799999995 33110 0000 000
Q ss_pred ccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCe---eEEEEEEee
Q 010968 273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSF 344 (496)
Q Consensus 273 mv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t---~Rw~lAWsF 344 (496)
.......++..+..+++++|.+..++....++..+...+++. +..+.+.++..|+. .+++++-.|
T Consensus 121 ------~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 121 ------SIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred ------HHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hceEEEeCCCCCCcccceEEEEEecC
Confidence 123356778888888899998888777677888888888875 77899999999974 566666443
No 80
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=3.4e-08 Score=91.67 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=46.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
++.+++|||||+|.+. .+..+++ -.++|+||+|+||+++.+|++.. +-+|.+++.+..
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf---EvqidlLqcdil 106 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEF---EVQIDLLQCDIL 106 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHh---hhhhheeeeecc
Confidence 4568999999999885 5555665 57999999999999999999875 334677777654
No 81
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.70 E-value=4.5e-07 Score=91.57 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=46.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
+.++||||||+|..+..|+. .+++|+|+|+|+.|++.|++|++.++ + .+++...|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~--~g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D 175 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL--LGFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYD 175 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEec
Confidence 34899999999998877765 36899999999999999999999875 5 47766655
No 82
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.70 E-value=3.6e-08 Score=97.18 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=53.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..++||||||+|+.++.++...+ +.+++++|+++++++.|++|++.++ +.++|+++.+|..
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~ 130 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDAL 130 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHH
Confidence 45899999999998888887765 5799999999999999999999995 8899999998753
No 83
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.69 E-value=1.3e-07 Score=93.25 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=38.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~ 157 (496)
..+|||||||+|.+...|+...|+.+|+|+|+|+.+++.|++
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE 71 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh
Confidence 468999999999999888888888999999999999999965
No 84
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=2.2e-07 Score=99.56 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=96.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+|||+|||+|..+..++.... ..+|+|+|+++.+++.|++|+++++ +. .|+++.+|...
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~~-~v~~~~~Da~~---------------- 312 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-IT-IIETIEGDARS---------------- 312 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-CC-eEEEEeCcccc----------------
Confidence 35899999999998877776554 4699999999999999999999985 64 58888776321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
+. ..+.||.|+++||+..+..- .++|......+.. .+
T Consensus 313 ------------------------------------~~-----~~~~fD~Vl~D~Pcsg~g~~-~r~p~~~~~~~~~-~~ 349 (445)
T PRK14904 313 ------------------------------------FS-----PEEQPDAILLDAPCTGTGVL-GRRAELRWKLTPE-KL 349 (445)
T ss_pred ------------------------------------cc-----cCCCCCEEEEcCCCCCcchh-hcCcchhhcCCHH-HH
Confidence 10 13579999999998654332 2345443322221 00
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~g 321 (496)
.. =...-.+|+..+..+++++|.+ |+-+.+..+-..+...|++++
T Consensus 350 ~~--l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 397 (445)
T PRK14904 350 AE--LVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP 397 (445)
T ss_pred HH--HHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 00 0123457899999998998876 334444456556667777653
No 85
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.68 E-value=5.7e-07 Score=95.25 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=53.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
...+||||||+|.....+|.+.|++.++|+|+++.+++.|.+++..++ +. .|.++.+|.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L~-NV~~i~~DA 181 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-LK-NLLIINYDA 181 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEECCH
Confidence 458999999999999999999999999999999999999999999885 75 499988874
No 86
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.68 E-value=2.2e-07 Score=88.88 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=46.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
+.+|||+|||+|..+..|+.+ +++|+|+|+|+.|++.|+++++.++ +. .|+++..|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~-~~-~v~~~~~d 86 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN-LD-NLHTAVVD 86 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC-CC-cceEEecC
Confidence 358999999999998888754 6899999999999999999998874 53 46666665
No 87
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.67 E-value=1.4e-07 Score=97.20 Aligned_cols=81 Identities=19% Similarity=0.092 Sum_probs=57.4
Q ss_pred cCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHH
Q 010968 73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (496)
Q Consensus 73 fGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL 152 (496)
||....+...++.++ +++...+..+.+.+.... +..+.+|||||||+|.++..|+.. +++|+|+|+|+.++
T Consensus 109 y~~~d~v~~~~l~~~-~~~~~~v~~~l~~l~~~~------~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml 179 (315)
T PLN02585 109 YGETDEVNKVQLDIR-LGHAQTVEKVLLWLAEDG------SLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMV 179 (315)
T ss_pred cCCccccCceeeecc-cChHHHHHHHHHHHHhcC------CCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHH
Confidence 333445666678887 555455555555543210 013468999999999998888753 68999999999999
Q ss_pred HHHHHHHHHC
Q 010968 153 EWAEKNVKSN 162 (496)
Q Consensus 153 ~~A~~N~~~N 162 (496)
+.|++|++..
T Consensus 180 ~~A~~~~~~~ 189 (315)
T PLN02585 180 AEAERRAKEA 189 (315)
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 88
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.67 E-value=8.5e-07 Score=85.22 Aligned_cols=140 Identities=18% Similarity=0.160 Sum_probs=97.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
...++|||||||.|++-++...|..+++|+|-++++++..++|+++.+ + ++++++.++...
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~-~n~~vv~g~Ap~----------------- 95 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-V-DNLEVVEGDAPE----------------- 95 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-C-CcEEEEeccchH-----------------
Confidence 358999999999999999977889999999999999999999999995 4 579998886321
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
.|.++ .+||.+ |-
T Consensus 96 -----------------------------------~L~~~----~~~dai--------------------FI-------- 108 (187)
T COG2242 96 -----------------------------------ALPDL----PSPDAI--------------------FI-------- 108 (187)
T ss_pred -----------------------------------hhcCC----CCCCEE--------------------EE--------
Confidence 12110 123333 21
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEEe
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWS 343 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAWs 343 (496)
||+ .=+..|++.+...++++|-+..-.-...++..+.+.+++.|+.++....-..|+...-.-+|.
T Consensus 109 -GGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~lg~~~~~~ 174 (187)
T COG2242 109 -GGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQISRGKPLGGGTMFR 174 (187)
T ss_pred -CCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEeecceeccCeeEee
Confidence 122 227888899888888888765555556677788889999998423333334444333223444
No 89
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.66 E-value=8.4e-07 Score=84.82 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=50.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||||||+|.....++...+ ..+++++|+++.+++.|++++..++ +..++.++..|.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~ 112 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDA 112 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEeccc
Confidence 35899999999999888877776 6899999999999999999998763 566788877763
No 90
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.66 E-value=4.2e-07 Score=72.75 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=44.0
Q ss_pred eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+++|+|||.|.+...++. .+..+++++|+++.+++.++++...+ ...+++++..|.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 56 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDA 56 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc--cccceEEEEcCh
Confidence 489999999998776665 56789999999999999999755443 345688877664
No 91
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.65 E-value=2.3e-07 Score=89.58 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=50.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..++||||||+|.++..|+.... +.+|+++|+++++++.|++|++.++ + ++++++.+|.
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~ 137 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDG 137 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCc
Confidence 45899999999999988877654 4579999999999999999999985 6 4688888764
No 92
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.64 E-value=1.5e-07 Score=102.54 Aligned_cols=49 Identities=18% Similarity=0.063 Sum_probs=41.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhc--------CCeeEEecCcHHHHHHHHHHHHHCC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLL--------GWSFVGSDMTDVALEWAEKNVKSNP 163 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~--------~~~v~avDIs~~AL~~A~~N~~~N~ 163 (496)
...+|||.|||+|++.+.++.+.+ ...++|+|||+.++..|+.|+...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 356899999999999888776653 2578999999999999999998763
No 93
>PRK06922 hypothetical protein; Provisional
Probab=98.63 E-value=3.2e-07 Score=102.24 Aligned_cols=120 Identities=12% Similarity=0.136 Sum_probs=83.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~ 195 (496)
+.+|||||||+|.....|+...|+.+++|+|+|+.|++.|+++...++ .++.++.+|..+ .
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~d-L--------------- 479 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAIN-L--------------- 479 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHh-C---------------
Confidence 458999999999988888888899999999999999999999986553 357777776321 0
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (496)
Q Consensus 196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~ 275 (496)
+ ..+ ++++||+|+||+++..-.. +-| ..+...
T Consensus 480 ------------------------p---------~~f-----edeSFDvVVsn~vLH~L~s---yIp---~~g~~f---- 511 (677)
T PRK06922 480 ------------------------S---------SSF-----EKESVDTIVYSSILHELFS---YIE---YEGKKF---- 511 (677)
T ss_pred ------------------------c---------ccc-----CCCCEEEEEEchHHHhhhh---hcc---cccccc----
Confidence 0 001 2457999999998753111 001 001110
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeC
Q 010968 276 SGGERAFITRIIEDSVALKQTFRWYTSMVG 305 (496)
Q Consensus 276 ~GGel~FI~riI~eS~~ll~~~gwftsmvG 305 (496)
...-+.+++++....++++|++...-+
T Consensus 512 ---~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 512 ---NHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred ---cHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 123467788888888999999876544
No 94
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.62 E-value=1.9e-07 Score=90.33 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=39.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~ 159 (496)
..+|||||||+|.+...|+...++.+++|+|+|++|++.|+++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC
Confidence 45799999999999888877667889999999999999998874
No 95
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.61 E-value=1.7e-06 Score=86.52 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=45.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||||||+|..+..|+.. .+++|+|+|+++.+++.|+++.... .+|.++..|.
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~----~~i~~~~~D~ 108 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEK-YGAHVHGVDICEKMVNIAKLRNSDK----NKIEFEANDI 108 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhh-cCCEEEEEECCHHHHHHHHHHcCcC----CceEEEECCc
Confidence 458999999999887777654 4789999999999999999986532 4688877763
No 96
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.61 E-value=4.1e-07 Score=92.11 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=42.4
Q ss_pred CCeEEEEcCchhHHHHHHHHH-------hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGAS-------LLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~-------~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r-I~~v~~d 175 (496)
..+|+|-+||+|.+...+... ....+++|+|+++.++.+|+.|+..++ .... +.+..+|
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~-~~~~~~~i~~~d 113 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG-IDNSNINIIQGD 113 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT-HHCBGCEEEES-
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc-cccccccccccc
Confidence 457999999999886665543 357899999999999999999997764 4332 3455555
No 97
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.61 E-value=9e-08 Score=100.10 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=48.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
.++||++||+|.+++.|+... .+|+|+|+++.|++.|++|++.|+ ++ +++++.+|.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~-~~-~v~~~~~d~ 263 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG-ID-NVQIIRMSA 263 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC-CC-cEEEEECCH
Confidence 369999999999999887653 489999999999999999999995 64 799988874
No 98
>PRK00811 spermidine synthase; Provisional
Probab=98.60 E-value=2.5e-06 Score=86.42 Aligned_cols=62 Identities=11% Similarity=0.009 Sum_probs=48.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC-CC--CCcEEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI--SELIEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~-~L--~~rI~~v~~d~ 176 (496)
++.+|||||||.|.++..+++.....+|+++|||+++++.|+++....+ +. +.+++++.+|.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da 140 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG 140 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch
Confidence 3568999999999998777654344689999999999999999886421 11 45788888874
No 99
>PRK08317 hypothetical protein; Provisional
Probab=98.60 E-value=3.1e-06 Score=80.37 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=53.4
Q ss_pred HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE
Q 010968 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIE 170 (496)
Q Consensus 92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~ 170 (496)
..|..++.+.+.. ....+|||+|||+|.+...++... +..+++|+|+++.+++.|+++... ....+.
T Consensus 5 ~~~~~~~~~~~~~---------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---~~~~~~ 72 (241)
T PRK08317 5 RRYRARTFELLAV---------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---LGPNVE 72 (241)
T ss_pred HHHHHHHHHHcCC---------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC---CCCceE
Confidence 4455555555432 134589999999999988888776 568999999999999999998433 234677
Q ss_pred EEEcc
Q 010968 171 IRKVD 175 (496)
Q Consensus 171 ~v~~d 175 (496)
++..|
T Consensus 73 ~~~~d 77 (241)
T PRK08317 73 FVRGD 77 (241)
T ss_pred EEecc
Confidence 77665
No 100
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.58 E-value=1.8e-07 Score=97.69 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=48.5
Q ss_pred eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
++||+|||+|.+++.|+... .+|+|+|++++|++.|++|++.|+ ++ +++++.+|.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~-~~-~v~~~~~d~ 254 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN-ID-NVQIIRMSA 254 (353)
T ss_pred cEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEEcCH
Confidence 69999999999999887664 389999999999999999999995 75 599988874
No 101
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.58 E-value=1.5e-06 Score=88.25 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=54.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..++||||||+|.++..++.+.|+.+++++|+ +.+++.|++|++..+ +.++|+++.+|..
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~ 209 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIY 209 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCcc
Confidence 45899999999999999999999999999998 789999999999985 8889999988743
No 102
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.58 E-value=1.6e-07 Score=89.64 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=57.5
Q ss_pred cCcEEEecCC-CeeCCCCCc--HhHHHHHHHH-hccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968 73 HGLNWWIPDG-QLCPTVPNR--SNYIHWIEDL-LSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (496)
Q Consensus 73 fGL~~~Vp~g-~LiPrvP~R--~nyi~wI~dl-L~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs 148 (496)
=|..+..|++ .+=|| ++| +...-|+... + ...++||+.+|||++++-.+.+ .-.+|+.||.|
T Consensus 9 kgr~l~~p~~~~~RPT-~drvrealFniL~~~~~------------~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~ 74 (183)
T PF03602_consen 9 KGRKLKTPKGDNTRPT-TDRVREALFNILQPRNL------------EGARVLDLFAGSGALGLEALSR-GAKSVVFVEKN 74 (183)
T ss_dssp TT-EEE-TT--TS-SS-SHHHHHHHHHHHHCH-H------------TT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-
T ss_pred CCCEecCCCCCCcCCC-cHHHHHHHHHHhccccc------------CCCeEEEcCCccCccHHHHHhc-CCCeEEEEECC
Confidence 3566777775 33444 322 3334444433 2 2468999999999998875543 33589999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 149 DVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 149 ~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+++++..++|++..+ +.++++++..|.
T Consensus 75 ~~a~~~i~~N~~~l~-~~~~~~v~~~d~ 101 (183)
T PF03602_consen 75 RKAIKIIKKNLEKLG-LEDKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHHHHHT--GGGEEEEESSH
T ss_pred HHHHHHHHHHHHHhC-CCcceeeeccCH
Confidence 999999999999885 777899888873
No 103
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.58 E-value=1.2e-07 Score=80.40 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=43.3
Q ss_pred EEEEcCchhHHHHHHHHHh---cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 119 GFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 119 vLDIGTGSG~I~ilLa~~~---~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
|||+|||+|.....++..+ +..+++|+|+|+++++.|+++....+ . +++++.+|.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~ 58 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADA 58 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCH
Confidence 7999999999988887765 35899999999999999999998753 4 688888875
No 104
>PRK03612 spermidine synthase; Provisional
Probab=98.56 E-value=2.9e-07 Score=100.74 Aligned_cols=136 Identities=12% Similarity=0.032 Sum_probs=88.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHH---CC-CC-CCcEEEEEccCCCCCCccccccc
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKS---NP-HI-SELIEIRKVDNSESTPSIQESLT 188 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~---N~-~L-~~rI~~v~~d~~~~~p~~~~~~~ 188 (496)
++.+|||||||+|.+...+++ .+. .+++++|||+++++.|++|... |+ .+ +.+++++..|...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~---------- 365 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN---------- 365 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH----------
Confidence 356899999999998777664 455 6999999999999999996421 10 12 2478888776321
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCC
Q 010968 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGG 268 (496)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G 268 (496)
.+.. ..++||+|++|+|.-.. |..
T Consensus 366 ------------------------------------------~l~~---~~~~fDvIi~D~~~~~~-------~~~---- 389 (521)
T PRK03612 366 ------------------------------------------WLRK---LAEKFDVIIVDLPDPSN-------PAL---- 389 (521)
T ss_pred ------------------------------------------HHHh---CCCCCCEEEEeCCCCCC-------cch----
Confidence 1111 23589999999875321 100
Q ss_pred CCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeC----CcCcHHHHHHHHHHcCCeeEEEE
Q 010968 269 TPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG----RKSNLKFLISKLRKVGVTIVKTT 328 (496)
Q Consensus 269 ~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvG----k~s~l~~L~~~L~~~g~~~vk~~ 328 (496)
. .-|-..+++...+.++++|.+....+ ....+..+.+.+++.|+ .+...
T Consensus 390 --~--------~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~ 442 (521)
T PRK03612 390 --G--------KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPY 442 (521)
T ss_pred --h--------ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEE
Confidence 0 01113344455567888998876432 24456678889999998 45443
No 105
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.54 E-value=5.1e-07 Score=88.80 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=44.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
..+|||||||+|.+...++...++.+++|+|+|+.+++.|+++.. ++.++.+|
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~~~d 84 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFVEAD 84 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEEECc
Confidence 468999999999998888888888999999999999999988742 36666665
No 106
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.52 E-value=1.3e-06 Score=85.72 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~ 159 (496)
..+|||||||+|.+...|+. .+.+++|+|+|+.+++.|+++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhC
Confidence 45899999999988766654 4689999999999999998875
No 107
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.50 E-value=1e-05 Score=76.51 Aligned_cols=57 Identities=25% Similarity=0.233 Sum_probs=46.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||+|||+|.+...++...+. .+++++|+++.+++.++++.. ...++.++.+|.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~----~~~~i~~~~~d~ 97 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE----LPLNIEFIQADA 97 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc----cCCCceEEecch
Confidence 468999999999988888777765 799999999999999999875 224677777653
No 108
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.46 E-value=2.4e-07 Score=92.04 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=50.1
Q ss_pred CCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968 88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (496)
Q Consensus 88 vP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~ 163 (496)
.|.|++||.-....-- +-...+|||+|||-|.++..+|+. +.+|+|+|++++++++|+.-+..++
T Consensus 41 N~~rl~~i~~~~~~~~---------~l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~g 105 (243)
T COG2227 41 NPLRLDYIREVARLRF---------DLPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESG 105 (243)
T ss_pred ccchhhhhhhhhhccc---------CCCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcc
Confidence 3668888854332100 013578999999999888888754 6999999999999999999998885
No 109
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.45 E-value=6.1e-07 Score=88.93 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=45.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||||||+|.+...|+.+. ..++|+|+|+++++.++++.... .+++++.+|.
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~~----~~v~v~~~D~ 84 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSLY----ERLEVIEGDA 84 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCcC----CcEEEEECch
Confidence 4589999999999988887765 35999999999999999887432 4688888874
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.45 E-value=2e-06 Score=82.61 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=54.0
Q ss_pred HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (496)
Q Consensus 92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~ 171 (496)
.....++.+++.. ....+|||||||+|.....|+... .+++++|+++++++.|++|++.++ +. .+++
T Consensus 64 p~~~~~l~~~l~~---------~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~-~~-~v~~ 130 (212)
T PRK00312 64 PYMVARMTELLEL---------KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG-LH-NVSV 130 (212)
T ss_pred HHHHHHHHHhcCC---------CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC-CC-ceEE
Confidence 3445566555542 134689999999999877666543 489999999999999999999885 64 3888
Q ss_pred EEccC
Q 010968 172 RKVDN 176 (496)
Q Consensus 172 v~~d~ 176 (496)
+.+|.
T Consensus 131 ~~~d~ 135 (212)
T PRK00312 131 RHGDG 135 (212)
T ss_pred EECCc
Confidence 87763
No 111
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.45 E-value=7.4e-06 Score=79.28 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=44.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
..+|||||||+|.++..++.. +.+++++|+++.+++.|++|+..++ + .++++..+
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~--~~~~~~~~ 103 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESG-L--KIDYRQTT 103 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcC-C--ceEEEecC
Confidence 458999999999988777653 5789999999999999999998764 3 46666554
No 112
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.44 E-value=4.4e-06 Score=78.93 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=82.4
Q ss_pred eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccc
Q 010968 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESN 197 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~ 197 (496)
.|+|++||.|.-.+.+|..+ .+|+|+|+|+.-+++|+.|++-.+ ++++|+++.+|..+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~------------------- 59 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFE------------------- 59 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHH-------------------
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHH-------------------
Confidence 58999999999988888763 479999999999999999999995 89999999998431
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccC
Q 010968 198 MDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSG 277 (496)
Q Consensus 198 ~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~G 277 (496)
++... +....||+|++.||+--..-.. .+...+. . ...+-
T Consensus 60 ---------------------------------~~~~~-~~~~~~D~vFlSPPWGGp~Y~~--~~~fdL~---~-~~~p~ 99 (163)
T PF09445_consen 60 ---------------------------------LLKRL-KSNKIFDVVFLSPPWGGPSYSK--KDVFDLE---K-SMQPF 99 (163)
T ss_dssp ---------------------------------HGGGB-------SEEEE---BSSGGGGG--SSSB-TT---T-SSSS-
T ss_pred ---------------------------------HHhhc-cccccccEEEECCCCCCccccc--cCccCHH---H-ccCCC
Confidence 11111 0112289999999996432211 1111110 0 11111
Q ss_pred chHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcC--CeeEEEEEe-cCCC
Q 010968 278 GERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG--VTIVKTTEF-VQGQ 334 (496)
Q Consensus 278 Gel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g--~~~vk~~ed-~qG~ 334 (496)
+ +..|++.+..+-..+. ..+.|.+.+.+|.+..++.. -..+++.+- +.|+
T Consensus 100 ~----~~~l~~~~~~~t~nv~---l~LPRn~dl~ql~~~~~~l~~~~~~~~v~~~~~n~~ 152 (163)
T PF09445_consen 100 N----LEDLLKAARKITPNVV---LFLPRNSDLNQLSQLTRELFGPSKKCEVEQNYLNGK 152 (163)
T ss_dssp -----HHHHHHHHHHH-S-EE---EEEETTB-HHHHHHT----T-TTEEEEEEEEEETTE
T ss_pred C----HHHHHHHHHhhCCCEE---EEeCCCCCHHHHHHHhccccCCCCeEEEEEehcCCe
Confidence 1 4556666666644444 45888899999988865542 233454443 3444
No 113
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.43 E-value=2.9e-06 Score=80.80 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=45.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+.+|||||||+|.....++...+..+++++|+++.+++.|+++.. .++.++.+|.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~ 89 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDA 89 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecch
Confidence 468999999999998888888888899999999999999987653 2466766653
No 114
>PRK04266 fibrillarin; Provisional
Probab=98.43 E-value=6.1e-06 Score=81.36 Aligned_cols=57 Identities=7% Similarity=-0.043 Sum_probs=46.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||+|||+|.+...|+...+..+|+|+|+++.+++.+.++++.. .+|.++.+|.
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~ 129 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADA 129 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCC
Confidence 35899999999999888877665568999999999999888887653 2477777764
No 115
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.42 E-value=8.1e-07 Score=87.87 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=44.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+.+|||+|||+|-+...|+... ++.+|+|+|+|+.+|+.|++.++..+ .. +|+++.+|.
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-~~-~i~~v~~da 107 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-LQ-NIEFVQGDA 107 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BT
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-CC-CeeEEEcCH
Confidence 4589999999999988887664 46899999999999999999998874 43 799999874
No 116
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.42 E-value=9.9e-07 Score=71.74 Aligned_cols=51 Identities=31% Similarity=0.436 Sum_probs=41.1
Q ss_pred EEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 120 LDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
||||||+|-....|+.. ++.+++|+|+++++++.|+++....+ +.++..|.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~-----~~~~~~d~ 51 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEG-----VSFRQGDA 51 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTST-----EEEEESBT
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccC-----chheeehH
Confidence 79999999988888776 78999999999999999999886543 55776663
No 117
>PRK06202 hypothetical protein; Provisional
Probab=98.41 E-value=5.9e-07 Score=87.37 Aligned_cols=48 Identities=21% Similarity=0.181 Sum_probs=39.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHHh----cCCeeEEecCcHHHHHHHHHHHHHC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSN 162 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~----~~~~v~avDIs~~AL~~A~~N~~~N 162 (496)
...+|||||||+|.+...|+... ++++++|+|+++++++.|+++...+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~ 111 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP 111 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC
Confidence 34689999999999877776532 4579999999999999999887544
No 118
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.41 E-value=8.3e-07 Score=88.39 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=52.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+.++||+|||||-++..++...+..+|+|+|+|+.||+.|++-+..-+ ..+ |+++.+|.
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dA 110 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDA 110 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEech
Confidence 568999999999999999988888899999999999999999988653 555 99999874
No 119
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.41 E-value=3.3e-06 Score=81.85 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=49.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||||||+|.+...++.... +.+|+++|+++++++.|++|++.++ + ++|+++.+|.
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~-~~v~~~~gd~ 136 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-Y-DNVEVIVGDG 136 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCc
Confidence 35899999999999888776643 4699999999999999999999874 5 4689888874
No 120
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.41 E-value=6e-06 Score=79.24 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=47.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
..+|||||||+|.++..|+.. +..++|+|+|+.+++.|+++....+ +.++|.++.+|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d 120 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGD 120 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcC
Confidence 358999999999988777654 4679999999999999999998774 55678887665
No 121
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.39 E-value=1e-06 Score=84.84 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=48.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..++||||||+|.+...++.. +.+++|+|+|+++++.|++++..++ ..+++++...|.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~ 113 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDL 113 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCh
Confidence 468999999999988777653 5799999999999999999998774 555788877653
No 122
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.39 E-value=5.3e-07 Score=95.29 Aligned_cols=57 Identities=14% Similarity=-0.030 Sum_probs=48.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
.++||++||+|.+++.++.+....+|+++|+|+.|++.|++|++.|+ ++ .++++..|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-~~-~~~v~~~D 115 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-LE-NEKVFNKD 115 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-ceEEEhhh
Confidence 47999999999999999887665589999999999999999999995 65 35666665
No 123
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.38 E-value=4e-06 Score=88.63 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=43.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
..+|||||||+|.++..++.. .+++|+|+|+|+++++.|+++++. + .+++...|
T Consensus 168 g~rVLDIGcG~G~~a~~la~~-~g~~V~giDlS~~~l~~A~~~~~~---l--~v~~~~~D 221 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEH-YGVSVVGVTISAEQQKLAQERCAG---L--PVEIRLQD 221 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcc---C--eEEEEECc
Confidence 358999999999998777654 478999999999999999999852 3 26665554
No 124
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.36 E-value=1.8e-06 Score=91.63 Aligned_cols=132 Identities=19% Similarity=0.226 Sum_probs=92.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCC-CCcEEEEEccCCCCCCcccccccCCccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHI-SELIEIRKVDNSESTPSIQESLTGKSVQ 193 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~~N~~L-~~rI~~v~~d~~~~~p~~~~~~~~~~~~ 193 (496)
..+|||+.|=||..+ +.+...++ +|+.||+|..||++|++|++.|+ + .+++.++..|...
T Consensus 218 GkrvLNlFsYTGgfS--v~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg-~~~~~~~~i~~Dvf~--------------- 279 (393)
T COG1092 218 GKRVLNLFSYTGGFS--VHAALGGASEVTSVDLSKRALEWARENAELNG-LDGDRHRFIVGDVFK--------------- 279 (393)
T ss_pred CCeEEEecccCcHHH--HHHHhcCCCceEEEeccHHHHHHHHHHHHhcC-CCccceeeehhhHHH---------------
Confidence 457999999999774 44445676 99999999999999999999996 6 4678999887542
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em 273 (496)
++....+.+++||+|+..||=|...... ...
T Consensus 280 -------------------------------------~l~~~~~~g~~fDlIilDPPsF~r~k~~------~~~------ 310 (393)
T COG1092 280 -------------------------------------WLRKAERRGEKFDLIILDPPSFARSKKQ------EFS------ 310 (393)
T ss_pred -------------------------------------HHHHHHhcCCcccEEEECCcccccCccc------chh------
Confidence 2333333467999999999988643321 111
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHHHHHHH
Q 010968 274 VCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRK 319 (496)
Q Consensus 274 v~~GGel~FI~riI~eS~~ll~~~gwft-smvGk~s~l~~L~~~L~~ 319 (496)
...-|.+|+..+..++.++|.+. +-....-..+..++.+.+
T Consensus 311 -----~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~ 352 (393)
T COG1092 311 -----AQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIAR 352 (393)
T ss_pred -----HHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence 34458899999999999988653 333323334444444433
No 125
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.35 E-value=5.1e-06 Score=87.62 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=48.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhcC--------------------------------C-------eeEEecCcHHHHHHHHH
Q 010968 117 VKGFDIGTGANCIYPLLGASLLG--------------------------------W-------SFVGSDMTDVALEWAEK 157 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~--------------------------------~-------~v~avDIs~~AL~~A~~ 157 (496)
..++|-=||||-|.+-.|...++ . .++|+|||+.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 47999999999887765543321 1 37899999999999999
Q ss_pred HHHHCCCCCCcEEEEEccCC
Q 010968 158 NVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 158 N~~~N~~L~~rI~~v~~d~~ 177 (496)
|++.-+ +.+.|++.+.|..
T Consensus 273 NA~~AG-v~d~I~f~~~d~~ 291 (381)
T COG0116 273 NARAAG-VGDLIEFKQADAT 291 (381)
T ss_pred HHHhcC-CCceEEEEEcchh
Confidence 999985 9999999988753
No 126
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=6.7e-06 Score=82.44 Aligned_cols=127 Identities=15% Similarity=0.210 Sum_probs=100.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+|+|.|||||++...|+... +.-+|+..|+.++.++.|++|++..+ +.++|++..+|..+
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~---------------- 157 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVRE---------------- 157 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEeccccc----------------
Confidence 4589999999999999998655 44699999999999999999999984 88889988887542
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
.. .++.||.++--=| +|
T Consensus 158 ---------------------------------------~~--~~~~vDav~LDmp----------~P------------ 174 (256)
T COG2519 158 ---------------------------------------GI--DEEDVDAVFLDLP----------DP------------ 174 (256)
T ss_pred ---------------------------------------cc--cccccCEEEEcCC----------Ch------------
Confidence 00 1236787775332 11
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEec
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV 331 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~ 331 (496)
-+.++.....++++|++.+.+.--.|++.+.+.|++.|+..+++.|-+
T Consensus 175 ---------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l 222 (256)
T COG2519 175 ---------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETL 222 (256)
T ss_pred ---------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheee
Confidence 124455566788999999999888899999999999999999888765
No 127
>PLN03075 nicotianamine synthase; Provisional
Probab=98.35 E-value=4.3e-06 Score=85.75 Aligned_cols=63 Identities=24% Similarity=0.213 Sum_probs=49.8
Q ss_pred CCCeEEEEcCchhHHHHH-HH-HHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 115 DKVKGFDIGTGANCIYPL-LG-ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~il-La-~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.+.+|+|||||.|-+..+ ++ ...|+.+|+++|+|++|++.|+++++...++.++|+|+.+|..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~ 187 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM 187 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence 456899999997755333 33 3468889999999999999999999653248889999988743
No 128
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.34 E-value=2e-06 Score=82.76 Aligned_cols=80 Identities=20% Similarity=0.366 Sum_probs=63.4
Q ss_pred HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (496)
Q Consensus 92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~ 171 (496)
+..+.|+.|......+. ....+|||||||.|-+..-|+.+-..-..+|+|.|++|+++|+.-+++++ +++.|++
T Consensus 49 ~riv~wl~d~~~~~rv~-----~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f 122 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVS-----KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG-FSNEIRF 122 (227)
T ss_pred HHHHHHHHhhhhhhhhc-----ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC-CCcceeE
Confidence 45788999887632111 12238999999999988888877555569999999999999988888885 8888999
Q ss_pred EEccCC
Q 010968 172 RKVDNS 177 (496)
Q Consensus 172 v~~d~~ 177 (496)
.+.|+.
T Consensus 123 ~q~DI~ 128 (227)
T KOG1271|consen 123 QQLDIT 128 (227)
T ss_pred EEeecc
Confidence 888865
No 129
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.34 E-value=2.2e-05 Score=81.09 Aligned_cols=58 Identities=19% Similarity=0.012 Sum_probs=38.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
..+|||||||+|.....++... ...|+|+|.|+.++..++...+... ...++.+...+
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ 179 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLG 179 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECC
Confidence 4689999999998766655432 2479999999999987654333211 12456665543
No 130
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.32 E-value=1.7e-05 Score=79.44 Aligned_cols=137 Identities=17% Similarity=0.230 Sum_probs=99.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+||+-|||||++...|+... |.-+|+-.|+.++.++.|++|++.++ +.+.|++...|+...
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~--------------- 104 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEE--------------- 104 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG---------------
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecc---------------
Confidence 3589999999999999998765 56799999999999999999999995 888999999886420
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
+|+ .+ .+..||.|+--=| +|..+
T Consensus 105 --------------------g~~---------------~~---~~~~~DavfLDlp----------~Pw~~--------- 127 (247)
T PF08704_consen 105 --------------------GFD---------------EE---LESDFDAVFLDLP----------DPWEA--------- 127 (247)
T ss_dssp ----------------------S---------------TT----TTSEEEEEEESS----------SGGGG---------
T ss_pred --------------------ccc---------------cc---ccCcccEEEEeCC----------CHHHH---------
Confidence 000 00 1246787764332 23332
Q ss_pred ccCchHHHHHHHHHHHHHhh-cCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEE
Q 010968 275 CSGGERAFITRIIEDSVALK-QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGL 340 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll-~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~l 340 (496)
|..+...+ +++|++.+...--.|+..+++.|++.||..+++.|-+ .++|-+
T Consensus 128 ------------i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~Evl---~R~~~v 179 (247)
T PF08704_consen 128 ------------IPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVEVL---LREWEV 179 (247)
T ss_dssp ------------HHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEEEE---EEEEEE
T ss_pred ------------HHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEEEE---eeEEEE
Confidence 22333345 7899999999888899999999999999999999876 455543
No 131
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=3.6e-06 Score=85.78 Aligned_cols=60 Identities=23% Similarity=0.380 Sum_probs=52.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..++||||||-|.+.+-+|.++ +.+|+|+++|++.++.|++-++.-+ ++++|+++..|..
T Consensus 73 G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~r 132 (283)
T COG2230 73 GMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYR 132 (283)
T ss_pred CCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEecccc
Confidence 4689999999999977666554 9999999999999999999998885 8889999888754
No 132
>PRK01581 speE spermidine synthase; Validated
Probab=98.29 E-value=2.3e-05 Score=82.55 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=44.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH-----HHCCCCCCcEEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV-----KSNPHISELIEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~-----~~N~~L~~rI~~v~~d~ 176 (496)
++.+||+||||.|.....+.+..+..+|+++|||++++++|++.- .+...-+.|++++.+|.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da 216 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA 216 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH
Confidence 456999999999987655554333469999999999999999631 11110145888888774
No 133
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.27 E-value=2.2e-05 Score=81.06 Aligned_cols=58 Identities=16% Similarity=-0.011 Sum_probs=41.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
..+|||||||+|..+..++...+ ..|+|+|.|+.++..++...+..+ ...+|.++..+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d 180 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLG 180 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCC
Confidence 46899999999988777765533 369999999998876554433321 23468887665
No 134
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.27 E-value=5.3e-06 Score=84.73 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=84.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQ 193 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~~N~~L~-~rI~~v~~d~~~~~p~~~~~~~~~~~~ 193 (496)
..+|||+-|=+|..++.. ...++ +|+.||+|..|+++|++|++.|+ ++ ++++++..|...
T Consensus 124 gkrvLnlFsYTGgfsv~A--a~gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~--------------- 185 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAA--AAGGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFK--------------- 185 (286)
T ss_dssp TCEEEEET-TTTHHHHHH--HHTTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHH---------------
T ss_pred CCceEEecCCCCHHHHHH--HHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHH---------------
Confidence 469999999999875543 34554 79999999999999999999996 75 689998887431
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em 273 (496)
.+..+ +..++||+||+.||=|.... + .
T Consensus 186 -------------------------------------~l~~~-~~~~~fD~IIlDPPsF~k~~---------~----~-- 212 (286)
T PF10672_consen 186 -------------------------------------FLKRL-KKGGRFDLIILDPPSFAKSK---------F----D-- 212 (286)
T ss_dssp -------------------------------------HHHHH-HHTT-EEEEEE--SSEESST---------C----E--
T ss_pred -------------------------------------HHHHH-hcCCCCCEEEECCCCCCCCH---------H----H--
Confidence 12221 22468999999999774211 0 0
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEE-EEEeCCcCcHHHHHHHHHHcC
Q 010968 274 VCSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLRKVG 321 (496)
Q Consensus 274 v~~GGel~FI~riI~eS~~ll~~~gwf-tsmvGk~s~l~~L~~~L~~~g 321 (496)
-..=|.+++..+..++.++|.+ ++-....-..+.+++.+++.+
T Consensus 213 -----~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a 256 (286)
T PF10672_consen 213 -----LERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAA 256 (286)
T ss_dssp -----HHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence 1123778999999999999864 444443445667777777655
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.26 E-value=5.4e-05 Score=76.06 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=45.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCC-C-CCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPH-I-SELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~-L-~~rI~~v~~d 175 (496)
+.+|||||||+|.+...++...+..+++++|+|+++++.|+++....+. + ..+++++..|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D 134 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD 134 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc
Confidence 4599999999999877666554457899999999999999998754311 1 2456666654
No 136
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.23 E-value=9.3e-06 Score=81.25 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=41.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcC---CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLG---WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~---~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
..+|||+|||+|.....|+...+. ++++|+|+|+.|++.|+++. + .+.++.+|
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~----~~~~~~~d 141 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---P----QVTFCVAS 141 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---C----CCeEEEee
Confidence 357999999999988888766553 48999999999999997653 1 25666665
No 137
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.20 E-value=7.9e-06 Score=79.07 Aligned_cols=57 Identities=25% Similarity=0.344 Sum_probs=45.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
++.++||||||.|-.++-||. .++.|+|+|+|+.+++.+++-++..+ ++ |+....|.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~--~G~~VtAvD~s~~al~~l~~~a~~~~-l~--i~~~~~Dl 86 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLAS--QGFDVTAVDISPVALEKLQRLAEEEG-LD--IRTRVADL 86 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHH--TT-EEEEEESSHHHHHHHHHHHHHTT--T--EEEEE-BG
T ss_pred CCCcEEEcCCCCcHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHhhcC-ce--eEEEEecc
Confidence 356999999999999888875 48999999999999999999888874 65 87777764
No 138
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.19 E-value=7.9e-06 Score=84.67 Aligned_cols=58 Identities=19% Similarity=0.168 Sum_probs=48.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
..+|||||||+|.++..++..... ..|+++|+++++++.|++|++.++ + +++.++.+|
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD 139 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGD 139 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCC
Confidence 358999999999998888876543 479999999999999999999885 5 468887765
No 139
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.19 E-value=7.9e-05 Score=71.36 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=52.0
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEc
Q 010968 95 IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174 (496)
Q Consensus 95 i~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~ 174 (496)
+.||.+.+..... .....+|||||||+|.+...++.. +..++++|+++.+++.|++++..++ .. ++.+...
T Consensus 30 ~~~i~~~~~~~~~-----~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~~-~~~~~~~ 100 (224)
T TIGR01983 30 LDYIRDTIRKNKK-----PLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDP-LL-KIEYRCT 100 (224)
T ss_pred HHHHHHHHHhccc-----CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcC-CC-ceEEEeC
Confidence 4677777754210 013468999999999887766543 4579999999999999999998774 32 4666655
Q ss_pred c
Q 010968 175 D 175 (496)
Q Consensus 175 d 175 (496)
+
T Consensus 101 d 101 (224)
T TIGR01983 101 S 101 (224)
T ss_pred C
Confidence 4
No 140
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.16 E-value=7.6e-06 Score=79.55 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=48.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
...|+|+.||-|..++.+|+......|+|+|++|.|+++.++|++.|+ ++++|.++.+|.
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~ 161 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDA 161 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-G
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCH
Confidence 458999999999998888875567789999999999999999999995 999999998874
No 141
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.15 E-value=7.1e-06 Score=83.08 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=48.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||||||.|.++..++.++ +++|+|+.+|++-.+.|++.++..+ ++++|+++..|.
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~ 121 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDY 121 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-G
T ss_pred CCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeec
Confidence 4589999999999988888775 8999999999999999999999885 999999988764
No 142
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.15 E-value=1.8e-05 Score=75.01 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=33.5
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~ 157 (496)
.+|||||||+|.+...++.. .+..++|+|+++++++.|++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA 54 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH
Confidence 48999999999987777643 46788999999999998864
No 143
>PLN02366 spermidine synthase
Probab=98.15 E-value=0.00012 Score=75.63 Aligned_cols=96 Identities=10% Similarity=0.048 Sum_probs=62.0
Q ss_pred hcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHH
Q 010968 72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDV 150 (496)
Q Consensus 72 ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~ 150 (496)
.||.-+.++-..-+ +-+....|-+.+..+.... ..++.+||+||||.|.++..+++. +. .+|+.+|||++
T Consensus 56 ~~g~~L~lDg~~q~-~~~de~~Y~e~l~h~~l~~-------~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~ 126 (308)
T PLN02366 56 TYGKVLVLDGVIQL-TERDECAYQEMITHLPLCS-------IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKM 126 (308)
T ss_pred CCceEEEECCEeee-cCccHHHHHHHHHHHHHhh-------CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHH
Confidence 46766666544333 2233344544444332111 123568999999999988777644 54 68999999999
Q ss_pred HHHHHHHHHHHC-CCC-CCcEEEEEccC
Q 010968 151 ALEWAEKNVKSN-PHI-SELIEIRKVDN 176 (496)
Q Consensus 151 AL~~A~~N~~~N-~~L-~~rI~~v~~d~ 176 (496)
.++.|++..... ..+ +.|++++.+|.
T Consensus 127 Vi~~ar~~f~~~~~~~~dpRv~vi~~Da 154 (308)
T PLN02366 127 VIDVSKKFFPDLAVGFDDPRVNLHIGDG 154 (308)
T ss_pred HHHHHHHhhhhhccccCCCceEEEEChH
Confidence 999999987532 113 35899988874
No 144
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.15 E-value=3.6e-06 Score=81.96 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=53.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
++.+||+||||+|.-++.++..+| +.+++.+|++++..+.|++|+++.+ ++++|+++.+|.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda 106 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDA 106 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-H
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEecc
Confidence 356899999999999999998876 5899999999999999999999995 899999999874
No 145
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=5.5e-06 Score=89.01 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=66.9
Q ss_pred CcEEEecCCCeeC-CCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHH
Q 010968 74 GLNWWIPDGQLCP-TVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (496)
Q Consensus 74 GL~~~Vp~g~LiP-rvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL 152 (496)
|+.|.++++...= -..-.+.++.|+.+.+... ...+++|+=||.|-+++.||. ...+|+|+||+++|+
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~---------~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV 328 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELA---------GGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAV 328 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhc---------CCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHH
Confidence 6667777643332 2222355667777777542 345899999999999988873 356999999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 010968 153 EWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 153 ~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+.|++|++.|+ +.+ +++..++.
T Consensus 329 ~~A~~NA~~n~-i~N-~~f~~~~a 350 (432)
T COG2265 329 EAAQENAAANG-IDN-VEFIAGDA 350 (432)
T ss_pred HHHHHHHHHcC-CCc-EEEEeCCH
Confidence 99999999996 766 88887763
No 146
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.12 E-value=1e-05 Score=79.84 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=63.4
Q ss_pred CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCC
Q 010968 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (496)
Q Consensus 89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~ 167 (496)
|++-.|+.++..+. ...++|+|||+.|.=++.+|..+| +.+++.+|++++..+.|++|.++-+ +.+
T Consensus 45 ~e~g~~L~~L~~~~------------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~ 111 (219)
T COG4122 45 PETGALLRLLARLS------------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-VDD 111 (219)
T ss_pred hhHHHHHHHHHHhc------------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-Ccc
Confidence 77888887776554 246899999999998889999888 7899999999999999999999995 999
Q ss_pred cEEEEEc
Q 010968 168 LIEIRKV 174 (496)
Q Consensus 168 rI~~v~~ 174 (496)
+|+++.+
T Consensus 112 ~i~~~~~ 118 (219)
T COG4122 112 RIELLLG 118 (219)
T ss_pred eEEEEec
Confidence 9998874
No 147
>PLN02476 O-methyltransferase
Probab=98.10 E-value=7.7e-06 Score=83.25 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=53.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|||||||+|..++.++...+ +-+++++|+++++++.|++|+++.+ +.++|+++.+|.
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA 179 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLA 179 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCH
Confidence 46899999999999888887765 5689999999999999999999995 889999999874
No 148
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.09 E-value=3.5e-07 Score=76.92 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=37.5
Q ss_pred EEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (496)
Q Consensus 120 LDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~ 163 (496)
||||||+|.+...++..++..+++|+|+|+.|++.|++......
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~ 44 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG 44 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC
Confidence 79999999998888888889999999999999999988888763
No 149
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.07 E-value=1.3e-05 Score=83.84 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=42.7
Q ss_pred eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
.+||+-||+|-+++.||.. ..+|+|+|+++.|++.|++|++.|+ ++ +++++..+
T Consensus 199 ~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~-i~-n~~f~~~~ 252 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG-ID-NVEFIRGD 252 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--
T ss_pred cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC-CC-cceEEEee
Confidence 7999999999998888754 3589999999999999999999995 74 58888765
No 150
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.06 E-value=4.1e-06 Score=84.36 Aligned_cols=53 Identities=28% Similarity=0.401 Sum_probs=43.5
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~ 171 (496)
.+|||+|||.|.+..-||+ .+++|+|+|+++++++.|++-...++-++..|..
T Consensus 91 ~~ilDvGCGgGLLSepLAr--lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y 143 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLAR--LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAY 143 (282)
T ss_pred ceEEEeccCccccchhhHh--hCCeeEeecccHHHHHHHHHhhhcCchhccccce
Confidence 4699999999999888875 4689999999999999999998777644443333
No 151
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.05 E-value=4.2e-06 Score=84.04 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=36.4
Q ss_pred CCCeEEEEcCchhH----HHHHHHHHhc-----CCeeEEecCcHHHHHHHHHHH
Q 010968 115 DKVKGFDIGTGANC----IYPLLGASLL-----GWSFVGSDMTDVALEWAEKNV 159 (496)
Q Consensus 115 ~~~~vLDIGTGSG~----I~ilLa~~~~-----~~~v~avDIs~~AL~~A~~N~ 159 (496)
.+.+|+|+|||+|- |+++|+...+ +++|+|+|||+.||+.|++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 45799999999996 5555655443 478999999999999999865
No 152
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.03 E-value=3.3e-05 Score=82.94 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=42.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..++||||||+|.+...|+.. ..+++|+|+++.+++.|++ .++ ...+++++..|.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~---~~~-~~~~i~~~~~d~ 92 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNES---ING-HYKNVKFMCADV 92 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHH---Hhc-cCCceEEEEecc
Confidence 358999999999998888765 3589999999999987654 232 335688888764
No 153
>PRK05785 hypothetical protein; Provisional
Probab=98.02 E-value=1.5e-05 Score=78.08 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=36.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N 158 (496)
+.+|||||||+|-++..|+... +.+|+|+|+|++|++.|++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc
Confidence 4589999999999988887665 67999999999999999753
No 154
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=1.2e-05 Score=87.08 Aligned_cols=93 Identities=22% Similarity=0.159 Sum_probs=67.7
Q ss_pred hHhcCcEEEecCCCeeCCCCCcHh-HHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968 70 LHDHGLNWWIPDGQLCPTVPNRSN-YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (496)
Q Consensus 70 ~~ffGL~~~Vp~g~LiPrvP~R~n-yi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs 148 (496)
.+.-||+|.|+++-.-=.--..++ +--.|.|.+... ....++|++||||.|++.|++. -.+|+|+|++
T Consensus 346 E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~---------~~k~llDv~CGTG~iglala~~--~~~ViGvEi~ 414 (534)
T KOG2187|consen 346 ESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLP---------ADKTLLDVCCGTGTIGLALARG--VKRVIGVEIS 414 (534)
T ss_pred eecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCC---------CCcEEEEEeecCCceehhhhcc--ccceeeeecC
Confidence 456789999998877665211111 122344554431 2368999999999999888754 4589999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 149 DVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 149 ~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
++|++-|++|++.|+ ++ +.+|+.+.
T Consensus 415 ~~aV~dA~~nA~~Ng-is-Na~Fi~gq 439 (534)
T KOG2187|consen 415 PDAVEDAEKNAQING-IS-NATFIVGQ 439 (534)
T ss_pred hhhcchhhhcchhcC-cc-ceeeeecc
Confidence 999999999999996 65 47777763
No 155
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.98 E-value=6.5e-05 Score=73.46 Aligned_cols=88 Identities=19% Similarity=0.125 Sum_probs=60.8
Q ss_pred CcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHH
Q 010968 74 GLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVAL 152 (496)
Q Consensus 74 GL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL 152 (496)
+..+.+..++-+.. ...+.++.++|.. ....++||||||||..+.+|+..... -.|+++|+++..+
T Consensus 44 d~~l~i~~~~~is~----P~~~a~~l~~L~l---------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~ 110 (209)
T PF01135_consen 44 DRPLPIGCGQTISA----PSMVARMLEALDL---------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA 110 (209)
T ss_dssp SS-EEEETTEEE------HHHHHHHHHHTTC----------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH
T ss_pred CCCeeecceeechH----HHHHHHHHHHHhc---------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH
Confidence 44566667777766 3445555566652 12458999999999998888765433 4799999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 010968 153 EWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 153 ~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
+.|++|++..+ +. +|.++.+|.
T Consensus 111 ~~A~~~l~~~~-~~-nv~~~~gdg 132 (209)
T PF01135_consen 111 ERARRNLARLG-ID-NVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHT-TH-SEEEEES-G
T ss_pred HHHHHHHHHhc-cC-ceeEEEcch
Confidence 99999999874 43 688888873
No 156
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.98 E-value=0.00017 Score=73.55 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=49.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|||+|||+|.....|+..++ +.+++|+|+|++||+.|++++.... -..+|..+.+|..
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~ 125 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFT 125 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEccc
Confidence 35799999999999888887776 6899999999999999999987531 2235777777743
No 157
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.93 E-value=1.6e-05 Score=74.86 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=40.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HISELIEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~-~L~~rI~~v~~d~ 176 (496)
...+||+||||+|..++.++......+|+++|.++ +++..+.|++.|+ ....++.+...+.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~W 106 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDW 106 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--T
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEe
Confidence 45799999999998887777655678999999999 9999999999984 1345677666553
No 158
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.91 E-value=0.00014 Score=73.44 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=50.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcC------CeeEEecCcHHHHHHHHHHHHHCCCCCCc--EEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLG------WSFVGSDMTDVALEWAEKNVKSNPHISEL--IEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~------~~v~avDIs~~AL~~A~~N~~~N~~L~~r--I~~v~~d~ 176 (496)
...++||+|+|||-|+..+....+. .+|+.+||+|++|+++++-+++-+ +.+. +.++.+|.
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDA 168 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCc
Confidence 4579999999999999888776554 799999999999999999987764 6544 77777663
No 159
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.88 E-value=0.00011 Score=71.80 Aligned_cols=57 Identities=25% Similarity=0.196 Sum_probs=48.3
Q ss_pred EEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 119 GFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 119 vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
++||||-.|.+++.|.....--+++|+||++..++.|++|++.++ +.++|+++.+|.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdG 57 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDG 57 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCc
Confidence 689999999999988876554589999999999999999999995 999999999874
No 160
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.86 E-value=3e-05 Score=77.21 Aligned_cols=140 Identities=24% Similarity=0.210 Sum_probs=93.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~ 193 (496)
+..+|||-|||-|.-++..+ ..++ .|+-+|.||..|++|..|==..+..+..|+++.+|..+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~--~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--------------- 196 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEAL--ERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--------------- 196 (287)
T ss_pred cCCEeeeeccCccHHHHHHH--HcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH---------------
Confidence 45689999999997654433 3455 99999999999999988753222234467888877321
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em 273 (496)
+...+ ++++||+|+--||=|+-. |.-.
T Consensus 197 -------------------------------------~V~~~--~D~sfDaIiHDPPRfS~A------------geLY-- 223 (287)
T COG2521 197 -------------------------------------VVKDF--DDESFDAIIHDPPRFSLA------------GELY-- 223 (287)
T ss_pred -------------------------------------HHhcC--CccccceEeeCCCccchh------------hhHh--
Confidence 11111 367899999999988632 2111
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcC-------cHHHHHHHHHHcCCeeEEEEEecCC
Q 010968 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS-------NLKFLISKLRKVGVTIVKTTEFVQG 333 (496)
Q Consensus 274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s-------~l~~L~~~L~~~g~~~vk~~ed~qG 333 (496)
.++||+.+.+ +++++|-..--+|.+. -.+.+.+.|++.||..|+..+..-|
T Consensus 224 -----seefY~El~R----iLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~g 281 (287)
T COG2521 224 -----SEEFYRELYR----ILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALG 281 (287)
T ss_pred -----HHHHHHHHHH----HcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccc
Confidence 3567776654 6777765545555333 2457888999999988887654333
No 161
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00029 Score=73.68 Aligned_cols=143 Identities=19% Similarity=0.214 Sum_probs=97.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEc-cCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV-DNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~-d~~~~~p~~~~~~~~~~~~~ 194 (496)
...+||==||||.|. +-+.+-+++++|+||+.++++-|+.|.+..+ +++ ..++.+ |...
T Consensus 198 G~~vlDPFcGTGgiL--iEagl~G~~viG~Did~~mv~gak~Nl~~y~-i~~-~~~~~~~Da~~---------------- 257 (347)
T COG1041 198 GELVLDPFCGTGGIL--IEAGLMGARVIGSDIDERMVRGAKINLEYYG-IED-YPVLKVLDATN---------------- 257 (347)
T ss_pred CCEeecCcCCccHHH--HhhhhcCceEeecchHHHHHhhhhhhhhhhC-cCc-eeEEEeccccc----------------
Confidence 348999999999884 4445789999999999999999999999884 554 444444 4321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
+ ++ ++.+||-|+|-|||-.+...+.. .
T Consensus 258 -------------------------------------l-pl--~~~~vdaIatDPPYGrst~~~~~---------~---- 284 (347)
T COG1041 258 -------------------------------------L-PL--RDNSVDAIATDPPYGRSTKIKGE---------G---- 284 (347)
T ss_pred -------------------------------------C-CC--CCCccceEEecCCCCcccccccc---------c----
Confidence 0 11 12369999999999876432210 0
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEe-cCCCeeEEEE
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF-VQGQTCRWGL 340 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed-~qG~t~Rw~l 340 (496)
=...|.++++.+...++++||+.+-.. ..-...+.+.++..+..+.. ++|.-.|.+.
T Consensus 285 ----l~~Ly~~~le~~~evLk~gG~~vf~~p-----~~~~~~~~~~~f~v~~~~~~~~H~sLtR~i~ 342 (347)
T COG1041 285 ----LDELYEEALESASEVLKPGGRIVFAAP-----RDPRHELEELGFKVLGRFTMRVHGSLTRVIY 342 (347)
T ss_pred ----HHHHHHHHHHHHHHHhhcCcEEEEecC-----CcchhhHhhcCceEEEEEEEeecCceEEEEE
Confidence 145788899998899999998754443 23344566778876655443 4555566543
No 162
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.82 E-value=3.1e-05 Score=81.86 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=49.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
+.++||+.||||..++.++.+.++ .+|+++|+|++|++.+++|++.|+ +. .++++..|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~~-~~~v~~~D 103 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-VE-NIEVPNED 103 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-cEEEEchh
Confidence 368999999999999999887655 589999999999999999999995 54 47777665
No 163
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.81 E-value=6e-05 Score=78.57 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=48.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
...|||+|||+|.+....| +-...+|+|+|-|.-| +.|++.++.|+ +++.|+++++.+
T Consensus 61 dK~VlDVGcGtGILS~F~a-kAGA~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkv 118 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAA-KAGARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKV 118 (346)
T ss_pred CCEEEEcCCCccHHHHHHH-HhCcceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecce
Confidence 4689999999997755444 3345689999999877 99999999995 999999998864
No 164
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.80 E-value=9e-05 Score=74.28 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=53.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..++|+|||++|.-++.++...+ +.+++.+|++++..+.|++|++..+ +.++|+++.++.
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a 140 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPA 140 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccH
Confidence 46899999999988888887664 6799999999999999999999995 889999998874
No 165
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.78 E-value=6.6e-05 Score=72.45 Aligned_cols=60 Identities=12% Similarity=0.044 Sum_probs=50.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
...++||+-+|||++++-.+.+ ...+++.+|.|.+|+...++|++..+ +..+.+++..|.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~~~~~~~da 102 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALG-LEGEARVLRNDA 102 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC-CccceEEEeecH
Confidence 3569999999999998776654 34689999999999999999999874 778888888763
No 166
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.77 E-value=7.5e-05 Score=80.70 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=46.4
Q ss_pred CCeEEEEcCchhHHHHHHHHH---h-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGAS---L-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~---~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
...|+|+|||+|.+....+.. . ...+|+|+|.++.|+...++-++.|+ ++++|+++++|..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-w~~~V~vi~~d~r 251 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-WGDKVTVIHGDMR 251 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-TTTTEEEEES-TT
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-CCCeEEEEeCccc
Confidence 468999999999875443322 1 24699999999999988888878885 9999999999854
No 167
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00022 Score=69.99 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=48.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+||+||||||.-+..|+.- -+ +|+.+|++++..+.|++|.+..+ +.+ |.++.+|.
T Consensus 73 g~~VLEIGtGsGY~aAvla~l-~~-~V~siEr~~~L~~~A~~~L~~lg-~~n-V~v~~gDG 129 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARL-VG-RVVSIERIEELAEQARRNLETLG-YEN-VTVRHGDG 129 (209)
T ss_pred CCeEEEECCCchHHHHHHHHH-hC-eEEEEEEcHHHHHHHHHHHHHcC-CCc-eEEEECCc
Confidence 468999999999887777653 34 99999999999999999999985 755 99999884
No 168
>PLN02823 spermine synthase
Probab=97.72 E-value=0.0009 Score=69.97 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=48.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC-CC-CCcEEEEEccCC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI-SELIEIRKVDNS 177 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~-~L-~~rI~~v~~d~~ 177 (496)
++.+||-||+|.|.++..+++..+..+++++|||++.+++|++....+. .+ +.|++++..|..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~ 167 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR 167 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH
Confidence 3568999999999887666654445689999999999999999875431 11 468898888743
No 169
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.68 E-value=0.00013 Score=65.13 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=49.6
Q ss_pred eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
.++|||||.|.++..++...++++++++|.++.+++.+++|++.|+ +. +++++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~~-~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-LP-NVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-CC-cEEEEEeee
Confidence 3899999999998888887788899999999999999999999985 64 488877653
No 170
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.65 E-value=0.00013 Score=75.99 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=47.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
....|||+|||||.+. ..|+.-...+|+|+|-|+ +.++|++-++.|+ +.+||.++.+.+
T Consensus 177 ~~kiVlDVGaGSGILS-~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~-~~~rItVI~GKi 235 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILS-FFAAQAGAKKVYAVEASE-MAQYARKLVASNN-LADRITVIPGKI 235 (517)
T ss_pred CCcEEEEecCCccHHH-HHHHHhCcceEEEEehhH-HHHHHHHHHhcCC-ccceEEEccCcc
Confidence 4568999999999764 344444446899999986 7899999999994 999999998864
No 171
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.65 E-value=0.00012 Score=71.38 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=42.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
.++||+|||.|.+...|+.+. -+++++|+++.|++.|++..... ..|+++..+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dv 98 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGL----PHVEWIQADV 98 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-T
T ss_pred ceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcC
Confidence 589999999999988887665 38999999999999999988753 3699988875
No 172
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.62 E-value=8.3e-05 Score=73.47 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=45.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
...+|.|||||.|.---+|+.++|++.++|+|-|++||+-|+. +.+ ..++..+|..
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~---rlp----~~~f~~aDl~ 85 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ---RLP----DATFEEADLR 85 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH---hCC----CCceecccHh
Confidence 3568999999999988889999999999999999999999843 322 3566666643
No 173
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.61 E-value=0.00012 Score=70.87 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=39.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|||||||.|.+...|.. ..+..++|+|||++.+..|.+ ++ +.++++|..
T Consensus 14 gsrVLDLGCGdG~LL~~L~~-~k~v~g~GvEid~~~v~~cv~----rG-----v~Viq~Dld 65 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKD-EKQVDGYGVEIDPDNVAACVA----RG-----VSVIQGDLD 65 (193)
T ss_pred CCEEEecCCCchHHHHHHHH-hcCCeEEEEecCHHHHHHHHH----cC-----CCEEECCHH
Confidence 35899999999988665554 468999999999998766533 32 567777753
No 174
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.61 E-value=0.00019 Score=71.88 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=42.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~ 161 (496)
.+..+|||||-+|.+.+.+++.+....|+|+|||+..+..|++|++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 45789999999999999999887777899999999999999999974
No 175
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.58 E-value=0.00078 Score=73.62 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=42.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhc----CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 117 VKGFDIGTGANCIYPLLGASLL----GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~----~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
.+|.|-+||||......+.... ...++|.|+++..+.+|+.|.-.++ ++..+.+..+|
T Consensus 188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg-i~~~~~i~~~d 249 (489)
T COG0286 188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG-IEGDANIRHGD 249 (489)
T ss_pred CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC-CCccccccccc
Confidence 3899999999977555444332 3679999999999999999999885 54323444443
No 176
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.51 E-value=0.0037 Score=60.18 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=88.5
Q ss_pred eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccc
Q 010968 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESN 197 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~ 197 (496)
+++|||||.|.=++.|+..+|+++++.+|-..+-+..-+.-+...+ |+ +++++.....+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L~-nv~v~~~R~E~------------------- 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-LS-NVEVINGRAEE------------------- 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--S-SEEEEES-HHH-------------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-CC-CEEEEEeeecc-------------------
Confidence 7999999999988888888999999999999999888888887774 75 58888764210
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccC
Q 010968 198 MDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSG 277 (496)
Q Consensus 198 ~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~G 277 (496)
....++||+|+|= |++
T Consensus 110 --------------------------------------~~~~~~fd~v~aR----------------Av~---------- 125 (184)
T PF02527_consen 110 --------------------------------------PEYRESFDVVTAR----------------AVA---------- 125 (184)
T ss_dssp --------------------------------------TTTTT-EEEEEEE----------------SSS----------
T ss_pred --------------------------------------cccCCCccEEEee----------------hhc----------
Confidence 0024689999861 111
Q ss_pred chHHHHHHHHHHHHHhhcCCeEEEEEeCCcC--cHHHHHHHHHHcCCeeEEEEEecCC
Q 010968 278 GERAFITRIIEDSVALKQTFRWYTSMVGRKS--NLKFLISKLRKVGVTIVKTTEFVQG 333 (496)
Q Consensus 278 Gel~FI~riI~eS~~ll~~~gwftsmvGk~s--~l~~L~~~L~~~g~~~vk~~ed~qG 333 (496)
. +..+++-+..+++++|.+..|-|+.. .++.+...+...++....+.++...
T Consensus 126 -~---l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~~~~~ 179 (184)
T PF02527_consen 126 -P---LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPEFELP 179 (184)
T ss_dssp -S---HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEEEE-T
T ss_pred -C---HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeeccccCC
Confidence 1 45566667778889999899999543 3445566677778777776666433
No 177
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.51 E-value=0.00045 Score=67.78 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=34.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE 156 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~ 156 (496)
..+|||+|||.|--+..||. .+++|+|+|+++.|++.|.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHH
Confidence 35899999999999888875 5899999999999999874
No 178
>PTZ00146 fibrillarin; Provisional
Probab=97.50 E-value=0.0064 Score=62.62 Aligned_cols=56 Identities=9% Similarity=-0.072 Sum_probs=38.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 117 VKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
.+|||||||+|.....++.... .-.|+|+|+++++++...+-++.. .+|.++..|.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da 190 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDA 190 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCc
Confidence 5899999999998877776653 358999999998664443333221 1366666664
No 179
>PRK04148 hypothetical protein; Provisional
Probab=97.44 E-value=0.00037 Score=64.07 Aligned_cols=52 Identities=21% Similarity=0.177 Sum_probs=40.3
Q ss_pred CCCeEEEEcCchhH-HHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 115 DKVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 115 ~~~~vLDIGTGSG~-I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
++.+++|||||+|. ++..|+. .+..|+|+|+++.+++.|+++. +.++..|..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~~~---------~~~v~dDlf 68 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKKLG---------LNAFVDDLF 68 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHHhC---------CeEEECcCC
Confidence 34689999999995 7777763 4789999999999988886652 456667754
No 180
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.43 E-value=0.00059 Score=68.29 Aligned_cols=71 Identities=17% Similarity=0.123 Sum_probs=55.6
Q ss_pred HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (496)
Q Consensus 92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~ 171 (496)
.+++..|.+.+... ....|||||.|.|.+...|+... .+++++|+|++.++..++....+ .++++
T Consensus 16 ~~~~~~Iv~~~~~~---------~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~----~~~~v 80 (262)
T PF00398_consen 16 PNIADKIVDALDLS---------EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASN----PNVEV 80 (262)
T ss_dssp HHHHHHHHHHHTCG---------TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTC----SSEEE
T ss_pred HHHHHHHHHhcCCC---------CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhc----cccee
Confidence 56777777777531 35689999999999988886654 79999999999999988876533 57999
Q ss_pred EEccCC
Q 010968 172 RKVDNS 177 (496)
Q Consensus 172 v~~d~~ 177 (496)
+.+|..
T Consensus 81 i~~D~l 86 (262)
T PF00398_consen 81 INGDFL 86 (262)
T ss_dssp EES-TT
T ss_pred eecchh
Confidence 999865
No 181
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.43 E-value=0.0037 Score=61.93 Aligned_cols=130 Identities=21% Similarity=0.200 Sum_probs=95.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~ 196 (496)
..+.||||-.+-++..|....+...++++||++-.++.|.+|+++++ +.++|+++.+|...
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~------------------ 78 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLA------------------ 78 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCcc------------------
Confidence 34999999999998888777777899999999999999999999995 99999999887431
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (496)
Q Consensus 197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~ 276 (496)
. +..+..+|.|+- ++.
T Consensus 79 -------------------------------------~-l~~~d~~d~ivI----------AGM---------------- 94 (226)
T COG2384 79 -------------------------------------V-LELEDEIDVIVI----------AGM---------------- 94 (226)
T ss_pred -------------------------------------c-cCccCCcCEEEE----------eCC----------------
Confidence 0 112345666651 221
Q ss_pred CchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCC
Q 010968 277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ 334 (496)
Q Consensus 277 GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~ 334 (496)
|-..|+.|+++....++...- ..+--..+...|.+.|.+.++.. +.-..+.++
T Consensus 95 --GG~lI~~ILee~~~~l~~~~r--lILQPn~~~~~LR~~L~~~~~~I-~~E~ileE~ 147 (226)
T COG2384 95 --GGTLIREILEEGKEKLKGVER--LILQPNIHTYELREWLSANSYEI-KAETILEED 147 (226)
T ss_pred --cHHHHHHHHHHhhhhhcCcce--EEECCCCCHHHHHHHHHhCCcee-eeeeeeccc
Confidence 224588899998877665532 45555788999999999999864 334444443
No 182
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00084 Score=67.91 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=45.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
...||+||.|.|++-..|+.+ ..+|+|+|||+..++.-++.... .++++++.+|..
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi~~DaL 86 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP----YDNLTVINGDAL 86 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc----ccceEEEeCchh
Confidence 458999999999998777654 45799999999999988877652 257999999854
No 183
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.35 E-value=0.00046 Score=67.49 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=34.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~ 157 (496)
..++||+|||.|--+..||. .+++|+|+|+|+.|++.|..
T Consensus 35 ~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFA 74 (213)
T ss_pred CCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHH
Confidence 35899999999999888875 48999999999999998643
No 184
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.24 E-value=0.0014 Score=63.19 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=49.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+||||||.|-..+.+|...|+..++|+|+....+..|.+.+...+ + .++.++.+|..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-l-~Nv~~~~~da~ 77 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-L-KNVRFLRGDAR 77 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-T-SSEEEEES-CT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-c-cceEEEEccHH
Confidence 38999999999998999999999999999999999999999998874 5 46999888743
No 185
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.20 E-value=0.00046 Score=69.12 Aligned_cols=57 Identities=23% Similarity=0.484 Sum_probs=41.9
Q ss_pred CCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968 86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 86 PrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~ 157 (496)
|..| ..|+.++...+ .+ ...++|+|||+|--+..++ .++. +|+|+|+++.+|++|++
T Consensus 17 P~YP-----tdw~~~ia~~~-------~~-h~~a~DvG~G~Gqa~~~ia-e~~k-~VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 17 PSYP-----TDWFKKIASRT-------EG-HRLAWDVGTGNGQAARGIA-EHYK-EVIATDVSEAMLKVAKK 73 (261)
T ss_pred CCCc-----HHHHHHHHhhC-------CC-cceEEEeccCCCcchHHHH-Hhhh-hheeecCCHHHHHHhhc
Confidence 6666 57888887643 12 2389999999995544444 4443 79999999999998865
No 186
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.10 E-value=0.0042 Score=67.75 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=92.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+|||+|+|.|.=...|+..+.+ -.++|.|+++.-++..++|+++.+ +. .|.+...|...
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-~~-nv~v~~~D~~~---------------- 175 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-VS-NVALTHFDGRV---------------- 175 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCchhh----------------
Confidence 458999999999988888877654 589999999999999999999985 64 36666555221
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccc-cCCCCcccCCCCCcc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-GLNPKTSCGGTPEEM 273 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea-~~eP~~al~G~~~Em 273 (496)
+... ..+.||.|++-+|= |.+.. ..+|.....-+...
T Consensus 176 -------------------------------------~~~~--~~~~fD~ILvDaPC--SG~G~~rk~p~~~~~~s~~~- 213 (470)
T PRK11933 176 -------------------------------------FGAA--LPETFDAILLDAPC--SGEGTVRKDPDALKNWSPES- 213 (470)
T ss_pred -------------------------------------hhhh--chhhcCeEEEcCCC--CCCcccccCHHHhhhCCHHH-
Confidence 0000 12469999999994 43322 23343322111110
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 010968 274 VCSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (496)
Q Consensus 274 v~~GGel~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~g 321 (496)
+.. =...=++|++.+..+++++|.+ |+-+....+-.-+...|++.+
T Consensus 214 v~~--l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 214 NLE--IAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred HHH--HHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 000 0122356889999999999876 445554555555666677654
No 187
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.10 E-value=0.0018 Score=58.95 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=46.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHH----hcCCeeEEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEc
Q 010968 115 DKVKGFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWAEKNVKSNP-HISELIEIRKV 174 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~----~~~~~v~avDIs~~AL~~A~~N~~~N~-~L~~rI~~v~~ 174 (496)
....|+|+|+|-|.++..|+.. .++++|+|+|.++..++.|++..+..+ .+..++.+...
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG 89 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence 4578999999999999988872 278999999999999999998887652 12334444444
No 188
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.09 E-value=0.0016 Score=58.19 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW 154 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~ 154 (496)
...+|||||||.|.+...++.. +.+++|+|+++.+++.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK 59 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh
Confidence 4569999999999887777433 4599999999999988
No 189
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.08 E-value=0.00042 Score=68.75 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=34.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~ 157 (496)
+..-|||||||||.-+..|. -.+..++|+|||+.||+.|.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~--~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLS--DSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheec--cCCceEEeecCCHHHHHHHHH
Confidence 56789999999997766663 457899999999999999987
No 190
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.05 E-value=0.0018 Score=66.06 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=48.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
...||++|-|+|.+-..|. ..+.+|+|+|+|+.++..-++-++..+ .+.+.+++.+|..
T Consensus 59 tD~VLEvGPGTGnLT~~lL--e~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~l 117 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLL--EAGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFL 117 (315)
T ss_pred CCEEEEeCCCCCHHHHHHH--HhcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEecccc
Confidence 3589999999998765554 346799999999999999988887765 6788888888743
No 191
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.04 E-value=0.0013 Score=67.63 Aligned_cols=57 Identities=12% Similarity=-0.074 Sum_probs=48.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
...+||.+||.|.-...++...+ +.+|+|+|+|++|++.|++++.. .+++++++++.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f 77 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNF 77 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCH
Confidence 35899999999999888887775 68999999999999999988754 25799998874
No 192
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.87 E-value=0.0087 Score=62.54 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=37.3
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHH-HHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968 94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCI-YPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (496)
Q Consensus 94 yi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I-~ilLa~~~~~~~v~avDIs~~AL~~A~~N~ 159 (496)
|=-||..+|-....+.........+|||||||-|.= .-... ..-..++|+||++++++.|++-.
T Consensus 41 fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~--~~i~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQK--AKIKHYVGIDISEESIEEARERY 105 (331)
T ss_dssp HHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHH--TT-SEEEEEES-HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHh--cCCCEEEEEeCCHHHHHHHHHHH
Confidence 344666655332222111112457999999997753 22221 12258999999999999999877
No 193
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.82 E-value=0.003 Score=63.57 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=73.5
Q ss_pred CCCCCHHHHHhhCCCccccccccCCCCcceecCChhhHHHHHHHHHhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhc
Q 010968 24 ENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLS 103 (496)
Q Consensus 24 ~~~pDF~~La~~yP~f~~~v~~~~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~ 103 (496)
..+||.++|.++. .+ ..+..|+++++...+.+|.....-. .|. .++.+....+..
T Consensus 47 ~~~p~~~~ll~~l---~~----------a~~~~D~e~~~~~~r~lL~~HaST~---------ERl---~~Ld~fY~~if~ 101 (251)
T PF07091_consen 47 EGRPDYDALLRKL---QE----------ALDVGDPEAIRAWCRRLLAGHASTR---------ERL---PNLDEFYDEIFG 101 (251)
T ss_dssp SS---HHHHHHHH---HH----------HHCTTHHHHHHHHHHHHHHTSHHHH---------CCG---GGHHHHHHHHCC
T ss_pred cCCCCHHHHHHHH---Hh----------ccCcCCHHHHHHHHHHHHhhccchh---------hhh---hhHHHHHHHHHh
Confidence 4677777777662 22 3667889999998888876543322 111 234444555554
Q ss_pred cCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 104 SNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 104 ~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.. +.+.+|+|||||-.-+++-.....++..++|+|||..+++.-..-+...+ .. .++...|..
T Consensus 102 ~~--------~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-~~--~~~~v~Dl~ 164 (251)
T PF07091_consen 102 RI--------PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-VP--HDARVRDLL 164 (251)
T ss_dssp CS-----------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--C--EEEEEE-TT
T ss_pred cC--------CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-CC--cceeEeeee
Confidence 32 13568999999999887665555567899999999999999988877763 44 455555644
No 194
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.63 E-value=0.013 Score=57.93 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=43.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE-EEEcc
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE-IRKVD 175 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~-~v~~d 175 (496)
.++.+|++|||+|.-..-+- -.|+.+|+++|=++.+-++|.+.++.+..+ +++ ++.++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~--~~~~fvva~ 134 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPL--QVERFVVAD 134 (252)
T ss_pred CccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCc--ceEEEEeec
Confidence 45678999999997643321 126789999999999999999999887422 355 66665
No 195
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.62 E-value=0.0032 Score=62.34 Aligned_cols=69 Identities=23% Similarity=0.234 Sum_probs=44.5
Q ss_pred CCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHH
Q 010968 86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKS 161 (496)
Q Consensus 86 PrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~--~~v~avDIs~~AL~~A~~N~~~ 161 (496)
|..|-|+.-+. .+..+... ..+.+..+-|=|||+|.+.-.|+.-..+ .+|+|+|||+++|++|++|...
T Consensus 29 p~FPVRLAsEi-~qR~l~~l------~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 29 PAFPVRLASEI-FQRALHYL------EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp ----HHHHHHH-HHHHHCTS------SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CCccHHHHHHH-HHHHHHhh------cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 55576755442 23344321 1245789999999999988777765544 4899999999999999999854
No 196
>PRK10742 putative methyltransferase; Provisional
Probab=96.57 E-value=0.0071 Score=61.00 Aligned_cols=58 Identities=10% Similarity=0.053 Sum_probs=47.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC------CC-CCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN------PH-ISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N------~~-L~~rI~~v~~d 175 (496)
..+|||+-+|+|..+..++.+ +++|+++|.++.+..+.+.|+++. +. +..+++++++|
T Consensus 89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 348999999999999888765 778999999999999999999873 11 22467777776
No 197
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.53 E-value=0.005 Score=63.19 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=35.1
Q ss_pred CCCeEEEEcCchh----HHHHHHHHHhc----CCeeEEecCcHHHHHHHHHHH
Q 010968 115 DKVKGFDIGTGAN----CIYPLLGASLL----GWSFVGSDMTDVALEWAEKNV 159 (496)
Q Consensus 115 ~~~~vLDIGTGSG----~I~ilLa~~~~----~~~v~avDIs~~AL~~A~~N~ 159 (496)
...+|+..||.|| -|+++|....+ +++|+|+|||+.+|+.|++-+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 3589999999999 35555544322 478999999999999999864
No 198
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.47 E-value=0.057 Score=54.03 Aligned_cols=62 Identities=16% Similarity=-0.014 Sum_probs=44.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC--CCCCcEEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--HISELIEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~--~L~~rI~~v~~d~ 176 (496)
++.+||=||-|.|.++-.+.+..+..+++++|||+..++.|++-..... .-+.|++++..|.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 4678999999999887666543334689999999999999998654321 1246899988873
No 199
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.41 E-value=0.016 Score=57.66 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=35.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~ 157 (496)
..+||+.|||.|.-+..|+. .+++|+|+|+|+.|++.+.+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHH
Confidence 45899999999998888875 47899999999999999865
No 200
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.39 E-value=0.026 Score=56.42 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=68.7
Q ss_pred ChhhHHHHHHHHHhHh-cCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHH
Q 010968 57 DFNATRELTRVLLLHD-HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGA 135 (496)
Q Consensus 57 d~~A~r~Lt~aLL~~f-fGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~ 135 (496)
.++.+++|.++.+.+- =+-.+.++ |.-. .++.-++... ++.++||||+=+|.=++..|.
T Consensus 34 e~~~l~el~e~t~~~~~~~~~m~v~--------~d~g---~fl~~li~~~---------~ak~~lelGvfTGySaL~~Al 93 (237)
T KOG1663|consen 34 EPELLKELREATLTYPQPGSEMLVG--------PDKG---QFLQMLIRLL---------NAKRTLELGVFTGYSALAVAL 93 (237)
T ss_pred CcHHHHHHHHHHhhcCCcccceecC--------hHHH---HHHHHHHHHh---------CCceEEEEecccCHHHHHHHH
Confidence 3567888888776664 12223343 2323 3444444431 346899999755544445555
Q ss_pred Hhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 136 SLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 136 ~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.+| +-+++++||++++.+++.+-++.-+ +..+|+++.++..
T Consensus 94 alp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~ 135 (237)
T KOG1663|consen 94 ALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPAL 135 (237)
T ss_pred hcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchh
Confidence 666 5799999999999999999998884 8999999988743
No 201
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.36 E-value=0.017 Score=56.61 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=43.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
+..+|||+|+|||..++..+ +.....++++||+|......+.|++.|+ + .|.+...|
T Consensus 79 rgkrVLd~gagsgLvaIAaa-~aGA~~v~a~d~~P~~~~ai~lNa~ang-v--~i~~~~~d 135 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAA-RAGAAEVVAADIDPWLEQAIRLNAAANG-V--SILFTHAD 135 (218)
T ss_pred ccceeeecccccChHHHHHH-HhhhHHHHhcCCChHHHHHhhcchhhcc-c--eeEEeecc
Confidence 35689999999997765443 2334589999999999999999999995 4 36665554
No 202
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.31 E-value=0.0097 Score=59.14 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=51.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+||||||.|--.+.+|.+.|++.++|+||....+..|.+-+...+ +. +|.++..|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-l~-Nlri~~~DA 107 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-LK-NLRLLCGDA 107 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-CC-cEEEEcCCH
Confidence 57999999999998999999999999999999999999999998874 64 588888774
No 203
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.29 E-value=0.0047 Score=60.26 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=46.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~ 178 (496)
....|+|+|||.++...+ +. .-+|+|+|.||.-.++|.+|+.-++ + +.++++.+|...
T Consensus 34 d~~~DLGaGsGiLs~~Aa-~~-A~rViAiE~dPk~a~~a~eN~~v~g-~-~n~evv~gDA~~ 91 (252)
T COG4076 34 DTFADLGAGSGILSVVAA-HA-AERVIAIEKDPKRARLAEENLHVPG-D-VNWEVVVGDARD 91 (252)
T ss_pred hceeeccCCcchHHHHHH-hh-hceEEEEecCcHHHHHhhhcCCCCC-C-cceEEEeccccc
Confidence 478999999997754443 33 4589999999999999999997774 4 569999998653
No 204
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.28 E-value=0.0073 Score=63.42 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=51.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
+..|+|+=+|-|-+++.+|.. ...+|+|+||||.|+++.++|++.|+ ++++|+.+.+|..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~r 248 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAR 248 (341)
T ss_pred CCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHH
Confidence 458999999999998777654 33449999999999999999999995 9999999999854
No 205
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.16 Score=53.57 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=94.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~--~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~ 193 (496)
..+|||+|.+.|.=...|+....+ ..|+|+|+++.-++..++|+++.+ +.+ +.++..|...
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~~n-v~~~~~d~~~--------------- 219 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-VRN-VIVVNKDARR--------------- 219 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-CCc-eEEEeccccc---------------
Confidence 468999999999766667766654 667999999999999999999985 655 6666655321
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em 273 (496)
+.......++||-|++=||=-.+.- ...+|..-..-+...+
T Consensus 220 --------------------------------------~~~~~~~~~~fD~iLlDaPCSg~G~-irr~Pd~~~~~~~~~i 260 (355)
T COG0144 220 --------------------------------------LAELLPGGEKFDRILLDAPCSGTGV-IRRDPDVKWRRTPEDI 260 (355)
T ss_pred --------------------------------------ccccccccCcCcEEEECCCCCCCcc-cccCccccccCCHHHH
Confidence 0000111347999999999533221 2345555332222200
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHc
Q 010968 274 VCSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKV 320 (496)
Q Consensus 274 v~~GGel~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~ 320 (496)
..-..+=.+|++.+..+++++|.+ |+-+-...+-+-+...|++.
T Consensus 261 ---~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 261 ---AELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhC
Confidence 001234456888889998888865 44555566766777778776
No 206
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.04 E-value=0.0036 Score=62.23 Aligned_cols=59 Identities=15% Similarity=0.030 Sum_probs=48.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
...|+|.=||.|.-.+..+.+ ...|+++||||.-+.+|++|++-.| +.+||+|+++|..
T Consensus 95 ~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~l 153 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFL 153 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHH
Confidence 346888777777665666654 4589999999999999999999995 9999999999854
No 207
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.95 E-value=0.14 Score=51.49 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=38.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~ 178 (496)
+.+||=||=+- .+++++|...+..+|+-+|||+..++.-++.+++.+ +. |+.++.|...
T Consensus 45 gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g-l~--i~~~~~DlR~ 103 (243)
T PF01861_consen 45 GKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG-LP--IEAVHYDLRD 103 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS
T ss_pred CCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC-Cc--eEEEEecccc
Confidence 46799888654 566677766667899999999999999999999885 65 8988888653
No 208
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.90 E-value=0.018 Score=56.27 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=45.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~ 178 (496)
..+++|||.|+|..+..++.++|+++++..|. |+.++.|++ .+||+++.+|..+
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~ 154 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFD 154 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTT
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHHh
Confidence 35899999999999999999999999999999 888998888 3589999998753
No 209
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.65 E-value=0.031 Score=60.49 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=49.7
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 114 ~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
+.++.+||||||+|.+..+.+ +-..-.++|+|+=.-+.++|++-..+|+ ..++|.++.-.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAv-ragaD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkr 124 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAV-RAGADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKR 124 (636)
T ss_pred CceEEEEEccCCccHHHHHHH-HhcCCeEEeehhhchHHHHHHHHHhcCC-Cccceeeeccc
Confidence 456789999999998755444 4345579999999999999999999996 99999998654
No 210
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.60 E-value=0.0049 Score=61.71 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=33.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N 158 (496)
-.++||||||+|..+..|-.. -.+++|+|||+.||+.|.+.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK 166 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc
Confidence 568999999999887776322 24799999999999998764
No 211
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.42 E-value=0.2 Score=46.53 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=65.7
Q ss_pred eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCC
Q 010968 141 SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPA 220 (496)
Q Consensus 141 ~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~ 220 (496)
+|+|.||+++|++.+++..+..+ +.++++++... +.+|+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~s-------------------He~l~--------------------- 39 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDS-------------------HENLD--------------------- 39 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES--------------------GGGGG---------------------
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECC-------------------HHHHH---------------------
Confidence 58999999999999999999985 88899998763 11111
Q ss_pred CCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEE
Q 010968 221 GAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY 300 (496)
Q Consensus 221 ~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwf 300 (496)
..++ .+++|++|-|==|.+.. +.+++|. -+=-..-++.+..+++++|..
T Consensus 40 -------------~~i~-~~~v~~~iFNLGYLPgg--------------Dk~i~T~---~~TTl~Al~~al~lL~~gG~i 88 (140)
T PF06962_consen 40 -------------EYIP-EGPVDAAIFNLGYLPGG--------------DKSITTK---PETTLKALEAALELLKPGGII 88 (140)
T ss_dssp -------------GT---S--EEEEEEEESB-CTS---------------TTSB-----HHHHHHHHHHHHHHEEEEEEE
T ss_pred -------------hhCc-cCCcCEEEEECCcCCCC--------------CCCCCcC---cHHHHHHHHHHHHhhccCCEE
Confidence 1121 24899999999887743 3333332 111223456777889999998
Q ss_pred EEEeCC--c---CcHHHHHHHHHHcC
Q 010968 301 TSMVGR--K---SNLKFLISKLRKVG 321 (496)
Q Consensus 301 tsmvGk--~---s~l~~L~~~L~~~g 321 (496)
+.++-. . .-.+.+.+.+....
T Consensus 89 ~iv~Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 89 TIVVYPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp EEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 877742 1 22445666666644
No 212
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=95.37 E-value=0.024 Score=56.37 Aligned_cols=38 Identities=13% Similarity=-0.003 Sum_probs=31.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW 154 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~ 154 (496)
...+||+|||+|.+...|+.. ...+|+|+|+++.++..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 458999999999987777653 44689999999988866
No 213
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.06 E-value=0.061 Score=59.25 Aligned_cols=59 Identities=12% Similarity=0.010 Sum_probs=49.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
....+||||||.|-....+|...|++.++|+|+....+..|.+.+...+ +. ++.++..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-l~-N~~~~~~~ 405 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-IT-NFLLFPNN 405 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-CC-eEEEEcCC
Confidence 3568999999999998999999999999999999999999988887764 64 46666554
No 214
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.02 E-value=0.44 Score=44.21 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=25.0
Q ss_pred EEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEccC
Q 010968 143 VGSDMTDVALEWAEKNVKSNP-HISELIEIRKVDN 176 (496)
Q Consensus 143 ~avDIs~~AL~~A~~N~~~N~-~L~~rI~~v~~d~ 176 (496)
+|+|+|+++|+.|+++.+... ....+|+++.+|.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~ 35 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA 35 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech
Confidence 489999999999987765321 1234689988874
No 215
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.02 E-value=0.047 Score=54.00 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=57.0
Q ss_pred HhHHHHHHHHhccCCCCCCCCCCC-CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE
Q 010968 92 SNYIHWIEDLLSSNIIPTTSRNGD-KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE 170 (496)
Q Consensus 92 ~nyi~wI~dlL~~~~i~~~~~~~~-~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~ 170 (496)
+-|.+++.|.+... +.. .. ..+++|||+|+|.=++-||-.+|+.+|+.+|-..+-+..-+.-.+..+ |+ +++
T Consensus 48 e~~~rHilDSl~~~--~~~---~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-L~-nv~ 120 (215)
T COG0357 48 ELWQRHILDSLVLL--PYL---DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-LE-NVE 120 (215)
T ss_pred HHHHHHHHHHhhhh--hcc---cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-CC-CeE
Confidence 55666776666532 111 11 469999999999888888878899999999999988888877777664 54 488
Q ss_pred EEEcc
Q 010968 171 IRKVD 175 (496)
Q Consensus 171 ~v~~d 175 (496)
++++.
T Consensus 121 i~~~R 125 (215)
T COG0357 121 IVHGR 125 (215)
T ss_pred Eehhh
Confidence 87664
No 216
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.74 E-value=0.19 Score=52.00 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=53.9
Q ss_pred CCCCCeEEEEcCchhHHHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968 113 NGDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (496)
Q Consensus 113 ~~~~~~vLDIGTGSG~I~ilLa~~~~~--~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~ 178 (496)
.+++++||||.||.|---+-.....+. .++...|.|+.+++..++-++.++ |++.++|.++|..+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~~dAfd 199 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQGDAFD 199 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEecCCCC
Confidence 357899999999999754444445565 699999999999999999999995 99888999999654
No 217
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=94.38 E-value=0.14 Score=53.36 Aligned_cols=40 Identities=15% Similarity=0.016 Sum_probs=28.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA 155 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A 155 (496)
+..+|||||||+|.-..-++.+ ....|+|+|-++..+...
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF 154 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQF 154 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHH
Confidence 3569999999999775555433 334799999887665543
No 218
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.32 E-value=0.2 Score=52.57 Aligned_cols=155 Identities=17% Similarity=0.228 Sum_probs=90.4
Q ss_pred CCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHH
Q 010968 82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVK 160 (496)
Q Consensus 82 g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~ 160 (496)
...-|.+= --|+=.||..+|-....+ ....++|||||-|.= ++.....+ -.++|+||.+.+++.|++-.+
T Consensus 91 Rq~S~Ii~-lRnfNNwIKs~LI~~y~~------~~~~~~~LgCGKGGD--LlKw~kAgI~~~igiDIAevSI~qa~~RYr 161 (389)
T KOG1975|consen 91 RQRSPIIF-LRNFNNWIKSVLINLYTK------RGDDVLDLGCGKGGD--LLKWDKAGIGEYIGIDIAEVSINQARKRYR 161 (389)
T ss_pred hccCceee-hhhhhHHHHHHHHHHHhc------cccccceeccCCccc--HhHhhhhcccceEeeehhhccHHHHHHHHH
Confidence 34444432 246778888777432211 224689999999954 33222223 379999999999999998664
Q ss_pred HCCCCCC----cEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 010968 161 SNPHISE----LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVV 236 (496)
Q Consensus 161 ~N~~L~~----rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~ 236 (496)
.-.+... .+.++.+|-.. .++ . +++.
T Consensus 162 dm~~r~~~~~f~a~f~~~Dc~~-----------------~~l-----------------~-------------d~~e--- 191 (389)
T KOG1975|consen 162 DMKNRFKKFIFTAVFIAADCFK-----------------ERL-----------------M-------------DLLE--- 191 (389)
T ss_pred HHHhhhhcccceeEEEEeccch-----------------hHH-----------------H-------------Hhcc---
Confidence 3211111 25666665321 000 0 0111
Q ss_pred CCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHH
Q 010968 237 RDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISK 316 (496)
Q Consensus 237 ~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~ 316 (496)
.++++||+|=|-==|+=+ +. ..+=.+.++..+...|++||.|.-- --+...|+..
T Consensus 192 ~~dp~fDivScQF~~HYa-----------Fe-----------tee~ar~~l~Nva~~LkpGG~FIgT---iPdsd~Ii~r 246 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYA-----------FE-----------TEESARIALRNVAKCLKPGGVFIGT---IPDSDVIIKR 246 (389)
T ss_pred CCCCCcceeeeeeeEeee-----------ec-----------cHHHHHHHHHHHHhhcCCCcEEEEe---cCcHHHHHHH
Confidence 124459999885333211 11 1122577888999999999986443 4467788888
Q ss_pred HHHc
Q 010968 317 LRKV 320 (496)
Q Consensus 317 L~~~ 320 (496)
|++.
T Consensus 247 lr~~ 250 (389)
T KOG1975|consen 247 LRAG 250 (389)
T ss_pred HHhc
Confidence 8875
No 219
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.28 E-value=0.97 Score=46.65 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=53.2
Q ss_pred CeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~ 178 (496)
..|++-|||||.+...+++.. |--+++-.|+...-.+-|.+-.+.++ +.+.+++..-|++.
T Consensus 107 svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 107 SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCG 168 (314)
T ss_pred CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeeccc
Confidence 489999999999988888765 44689999999999999999999995 99999999998763
No 220
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.06 E-value=0.19 Score=51.68 Aligned_cols=62 Identities=16% Similarity=0.067 Sum_probs=47.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC--CCCCcEEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--HISELIEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~--~L~~rI~~v~~d~ 176 (496)
++.+||=||-|.|...-.+.+..+--+++.||||++.+++|++=..... ..+.|++++..|.
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 3459999999999987777766556799999999999999998654221 1246888887774
No 221
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=94.05 E-value=0.07 Score=46.61 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=38.7
Q ss_pred cEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeC-----CcCcHHHHHH
Q 010968 241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG-----RKSNLKFLIS 315 (496)
Q Consensus 241 ~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvG-----k~s~l~~L~~ 315 (496)
+||+||.||||.............. . ....+.-+++.+..++ .|.+.+.+. .....+.+.+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~---~---------~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~ 67 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKK---K---------KSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRK 67 (106)
T ss_pred CcCEEEECCCChhhccccchhhccc---c---------cCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHH
Confidence 5999999999998764322100000 0 3445677888888877 555544332 2344566666
Q ss_pred HHHHc
Q 010968 316 KLRKV 320 (496)
Q Consensus 316 ~L~~~ 320 (496)
.|-+.
T Consensus 68 ~l~~~ 72 (106)
T PF07669_consen 68 FLLNN 72 (106)
T ss_pred HHhcC
Confidence 66543
No 222
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.98 E-value=0.045 Score=55.22 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=37.5
Q ss_pred CeEEEEcCchhH-HHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHHCC
Q 010968 117 VKGFDIGTGANC-IYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNP 163 (496)
Q Consensus 117 ~~vLDIGTGSG~-I~ilLa~~~~~--~~v~avDIs~~AL~~A~~N~~~N~ 163 (496)
.+||+||||.|- +.++|. ..++ ..++|+|-+|.|++.-++|...+.
T Consensus 73 ~~ilEvGCGvGNtvfPll~-~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e 121 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLK-TSPNNRLKVYACDFSPRAIELVKKSSGYDE 121 (264)
T ss_pred hhheeeccCCCcccchhhh-cCCCCCeEEEEcCCChHHHHHHHhccccch
Confidence 379999999996 455554 4454 899999999999999999987763
No 223
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=93.91 E-value=0.087 Score=51.90 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=33.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE 156 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~ 156 (496)
..+||+.|||.|.-...|+.+ +++|+|+|+++.|++.|.
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~ 76 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAF 76 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHH
T ss_pred CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHH
Confidence 458999999999887777754 789999999999999983
No 224
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=93.76 E-value=0.072 Score=51.76 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCCeEEEEcCchh----HHHHHHHHHh---c--CCeeEEecCcHHHHHHHHHH
Q 010968 115 DKVKGFDIGTGAN----CIYPLLGASL---L--GWSFVGSDMTDVALEWAEKN 158 (496)
Q Consensus 115 ~~~~vLDIGTGSG----~I~ilLa~~~---~--~~~v~avDIs~~AL~~A~~N 158 (496)
.+.+|+..||+|| -|+++|.... . .++++|+|||+.+|+.|++=
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 5689999999999 3554554422 2 36899999999999999864
No 225
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.72 E-value=0.045 Score=57.72 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=44.6
Q ss_pred EEecCCCeeCCCCCcHhHHHHHHH----Hhc------cCCCCCCCC-------------CCCCCeEEEEcCchhHHHHHH
Q 010968 77 WWIPDGQLCPTVPNRSNYIHWIED----LLS------SNIIPTTSR-------------NGDKVKGFDIGTGANCIYPLL 133 (496)
Q Consensus 77 ~~Vp~g~LiPrvP~R~nyi~wI~d----lL~------~~~i~~~~~-------------~~~~~~vLDIGTGSG~I~ilL 133 (496)
|.+.++ ++|.-|.+--+=+||.+ ++. ...+..++- -.....|.|==.|+|.+ ++
T Consensus 148 y~~~pn-~~p~~p~~IyFGr~ig~g~R~li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGsl--Lv 224 (421)
T KOG2671|consen 148 YELDPN-VGPEEPKKIYFGRLIGEGQRELIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSL--LV 224 (421)
T ss_pred eccCCC-CCCCCcceeeehhhhccchHhHhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccCce--ee
Confidence 444555 67777877777777753 221 112222210 01234688855555544 45
Q ss_pred HHHhcCCeeEEecCcHHHHH
Q 010968 134 GASLLGWSFVGSDMTDVALE 153 (496)
Q Consensus 134 a~~~~~~~v~avDIs~~AL~ 153 (496)
++...++-|+|+|||-.++.
T Consensus 225 saa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 225 SAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred ehhhhcceeeccccchheee
Confidence 55678899999999998887
No 226
>PRK11524 putative methyltransferase; Provisional
Probab=93.34 E-value=0.31 Score=49.52 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=44.2
Q ss_pred CCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHH
Q 010968 239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLR 318 (496)
Q Consensus 239 ~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~ 318 (496)
+++||+|++||||..........+ . +....-++++...+.++..+++++|.+.+.++ ...+..+ ..+.
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~--~--------~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~-~~~~~~~-~~~~ 92 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIE--A--------WKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS-TENMPFI-DLYC 92 (284)
T ss_pred cCcccEEEECCCcccccccccccc--c--------ccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC-chhhhHH-HHHH
Confidence 568999999999975221111100 0 00011246678899999999999999877665 4444433 3444
Q ss_pred HcCC
Q 010968 319 KVGV 322 (496)
Q Consensus 319 ~~g~ 322 (496)
+.|+
T Consensus 93 ~~~f 96 (284)
T PRK11524 93 RKLF 96 (284)
T ss_pred hcCc
Confidence 5555
No 227
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=93.24 E-value=0.22 Score=54.66 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=35.8
Q ss_pred CeEEEEcCchhHHHHHHHHHh----cCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNP 163 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~----~~~~v~avDIs~~AL~~A~~N~~~N~ 163 (496)
..+.|.+||||-......... ....++|-++.+.+...|+.|...++
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~ 269 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN 269 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC
Confidence 479999999998754333222 12469999999999999999987763
No 228
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.81 E-value=0.26 Score=52.50 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCC-cEEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~-rI~~v~~d~ 176 (496)
.+.++||-=+|||.=++-++.+.++ .+|++-|||++|++..++|++.|+ +++ +|++.+.|.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DA 111 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDA 111 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-H
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhH
Confidence 3578999999999999999998765 689999999999999999999996 887 788887763
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=92.72 E-value=0.45 Score=46.63 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=31.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCe-eEEecCcHHHHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNVK 160 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~-v~avDIs~~AL~~A~~N~~ 160 (496)
....+|||||.|-+-...+. ..+++ .+|+|+.+...+.|+.+.+
T Consensus 43 ~dvF~DlGSG~G~~v~~aal-~~~~~~~~GIEi~~~~~~~a~~~~~ 87 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAAL-QTGCKKSVGIEILPELHDLAEELLE 87 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHH-HH--SEEEEEE-SHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH-HcCCcEEEEEEechHHHHHHHHHHH
Confidence 35899999999987554444 44554 9999999999999987664
No 230
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.69 E-value=0.14 Score=50.82 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=43.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N 162 (496)
+++.+.|||||-|.+.+.|+-.+|+--++|.||-...-++-++-|+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence 568899999999999889998999999999999999999988887654
No 231
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=0.19 Score=47.64 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=60.3
Q ss_pred eeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968 84 LCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (496)
Q Consensus 84 LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~ 163 (496)
-+|-||-+.+-+..+..++.. +.+.+.+|||+|-|-|-+..+ +..-..-+|+|.+|-.+.+++--+-+.+
T Consensus 50 cvPYVpAtteQv~nVLSll~~---------n~~GklvDlGSGDGRiVlaaa-r~g~~~a~GvELNpwLVaysrl~a~R~g 119 (199)
T KOG4058|consen 50 CVPYVPATTEQVENVLSLLRG---------NPKGKLVDLGSGDGRIVLAAA-RCGLRPAVGVELNPWLVAYSRLHAWRAG 119 (199)
T ss_pred cccccCccHHHHHHHHHHccC---------CCCCcEEeccCCCceeehhhh-hhCCCcCCceeccHHHHHHHHHHHHHHh
Confidence 467778777777776666643 245789999999999844333 2223578999999999999999888874
Q ss_pred CCCCcEEEEEccC
Q 010968 164 HISELIEIRKVDN 176 (496)
Q Consensus 164 ~L~~rI~~v~~d~ 176 (496)
+..+..|+.-|.
T Consensus 120 -~~k~trf~Rkdl 131 (199)
T KOG4058|consen 120 -CAKSTRFRRKDL 131 (199)
T ss_pred -cccchhhhhhhh
Confidence 777777766654
No 232
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.29 E-value=0.18 Score=51.45 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=36.9
Q ss_pred CCCeEEEEcCchh----HHHHHHHHHhc-----CCeeEEecCcHHHHHHHHHH
Q 010968 115 DKVKGFDIGTGAN----CIYPLLGASLL-----GWSFVGSDMTDVALEWAEKN 158 (496)
Q Consensus 115 ~~~~vLDIGTGSG----~I~ilLa~~~~-----~~~v~avDIs~~AL~~A~~N 158 (496)
+..+|.-.||+|| -|+++|....+ .++|+|+|||..+|+.|+.=
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 4789999999999 67777766654 47999999999999999853
No 233
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=92.21 E-value=0.9 Score=44.78 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=39.7
Q ss_pred eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N 162 (496)
+||+||+|||-=+...+..+|..+..-+|+++..+..-+..+...
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~ 72 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA 72 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc
Confidence 699999999998888999999999999999999987666666655
No 234
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=0.36 Score=48.04 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=36.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSN 162 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N 162 (496)
..+.||+|+|||.+....+... ++...+|+|.-++.++.+++|+...
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD 131 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence 3579999999997765555332 3445599999999999999999864
No 235
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=91.70 E-value=0.53 Score=48.04 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhHhcCcE---EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHH
Q 010968 60 ATRELTRVLLLHDHGLN---WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS 136 (496)
Q Consensus 60 A~r~Lt~aLL~~ffGL~---~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~ 136 (496)
-.+.+.+.+|..||..+ -.+..|..-= =.++.+ ..+|......+. .+.+..++||||.|.|-+-..++..
T Consensus 43 l~~~l~~~~L~~f~S~T~iNG~LgRG~MFv--fS~~Q~----~~LL~~~~~~~~-~~~~~~~lLDlGAGdG~VT~~l~~~ 115 (265)
T PF05219_consen 43 LWHSLASSILSWFMSKTDINGILGRGSMFV--FSEEQF----RKLLRISGFSWN-PDWKDKSLLDLGAGDGEVTERLAPL 115 (265)
T ss_pred HHHHHHHHHHHHHHhHHhHhhhhcCCcEEE--ecHHHH----HHHhhhhccCCC-CcccCCceEEecCCCcHHHHHHHhh
Confidence 35788888999998763 2344443221 122333 334432211111 1124568999999999998877654
Q ss_pred hcCCeeEEecCcHHHHH
Q 010968 137 LLGWSFVGSDMTDVALE 153 (496)
Q Consensus 137 ~~~~~v~avDIs~~AL~ 153 (496)
+. +|+++|+|+.|..
T Consensus 116 f~--~v~aTE~S~~Mr~ 130 (265)
T PF05219_consen 116 FK--EVYATEASPPMRW 130 (265)
T ss_pred cc--eEEeecCCHHHHH
Confidence 43 6999999998843
No 236
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=91.55 E-value=0.39 Score=48.77 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=35.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSN 162 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N 162 (496)
.+.+|||+|+|.|.-..++...++. .+++++|.|+.++++|+.-++..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 4678999999999643333223343 47999999999999998866543
No 237
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.90 E-value=0.45 Score=44.76 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=31.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~ 157 (496)
.+..|||-=+|||-. ++|+...+-+.+|+|++++.+++|++
T Consensus 191 ~gdiVlDpF~GSGTT--~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTT--AVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHH--HHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChH--HHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 346899999999976 45556677899999999999999975
No 238
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=90.63 E-value=0.54 Score=47.64 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=32.2
Q ss_pred eEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHH
Q 010968 118 KGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK 160 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~ 160 (496)
+++|+.||+|.... +.+..+. .+.++|+++.|++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~--gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRL--GLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHH--HHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 68999999997744 4444455 46889999999999888863
No 239
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=90.39 E-value=1.5 Score=45.74 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=49.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
...++|-=+|.|.=+..++..+++.+++|+|+|+.|++.|++..+.. .+++++++++.
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~---~~R~~~i~~nF 78 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF---EGRVVLIHDNF 78 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc---CCcEEEEeCCH
Confidence 35799999999988888887776789999999999999999988754 46899988864
No 240
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=89.82 E-value=0.87 Score=46.51 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=92.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
...|||+|+|.|.=...++..+. ...++|.|+++.-+...+.|+++.+ +. .|.++..|...
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-~~-~v~~~~~D~~~---------------- 147 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-VF-NVIVINADARK---------------- 147 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--S-SEEEEESHHHH----------------
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-Cc-eEEEEeecccc----------------
Confidence 35799999999987777777665 5799999999999999999999985 54 46665554210
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCccc-ccCCCCcccCCCCCcc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEE-AGLNPKTSCGGTPEEM 273 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~ee-a~~eP~~al~G~~~Em 273 (496)
+.... ....||.|+.-+|= |... ...+|.....-... .
T Consensus 148 ------------------------------------~~~~~--~~~~fd~VlvDaPC--Sg~G~i~r~p~~~~~~~~~-~ 186 (283)
T PF01189_consen 148 ------------------------------------LDPKK--PESKFDRVLVDAPC--SGLGTIRRNPDIKWRRSPE-D 186 (283)
T ss_dssp ------------------------------------HHHHH--HTTTEEEEEEECSC--CCGGGTTTCTTHHHHE-TT-H
T ss_pred ------------------------------------ccccc--cccccchhhcCCCc--cchhhhhhccchhhccccc-c
Confidence 00001 12369999999994 3332 12345432211111 0
Q ss_pred cccCchHHH-HHHHHHHHHHhh----cCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 010968 274 VCSGGERAF-ITRIIEDSVALK----QTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (496)
Q Consensus 274 v~~GGel~F-I~riI~eS~~ll----~~~gwf---tsmvGk~s~l~~L~~~L~~~g 321 (496)
+ -.+.. =.+|++.+..+. +++|.. |+-+.+..+-.-+...|++..
T Consensus 187 ~---~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 187 I---EKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp H---HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred c---chHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 0 02222 345888888888 777754 455666777777777788763
No 241
>PRK13699 putative methylase; Provisional
Probab=89.71 E-value=2.3 Score=42.08 Aligned_cols=76 Identities=13% Similarity=0.340 Sum_probs=51.0
Q ss_pred CCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHH
Q 010968 238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL 317 (496)
Q Consensus 238 ~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L 317 (496)
+++++|+|++=|||.-...... -+. ..+ .. -.++....+.++.+.+++++++.+..+ ..+...+...+
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~--~~~-~~~-~~-------~~ew~~~~l~E~~RVLKpgg~l~if~~-~~~~~~~~~al 84 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQ--GRT-IAG-DK-------TDEWLQPACNEMYRVLKKDALMVSFYG-WNRVDRFMAAW 84 (227)
T ss_pred CccccceEEeCCCcccccccCC--Ccc-ccc-cc-------HHHHHHHHHHHHHHHcCCCCEEEEEec-cccHHHHHHHH
Confidence 4678999999999974311100 000 011 11 347788899999998888888766555 45567788888
Q ss_pred HHcCCeeE
Q 010968 318 RKVGVTIV 325 (496)
Q Consensus 318 ~~~g~~~v 325 (496)
++.|+...
T Consensus 85 ~~~GF~l~ 92 (227)
T PRK13699 85 KNAGFSVV 92 (227)
T ss_pred HHCCCEEe
Confidence 89998543
No 242
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=89.58 E-value=0.72 Score=37.13 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=30.0
Q ss_pred EEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHH
Q 010968 119 GFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVK 160 (496)
Q Consensus 119 vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~ 160 (496)
++|+|||+|... .+...... ..++|+|+++.++..++....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE 93 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh
Confidence 999999999865 23222222 589999999999999665543
No 243
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=89.44 E-value=4.8 Score=40.19 Aligned_cols=67 Identities=21% Similarity=0.221 Sum_probs=40.8
Q ss_pred CCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEE-EEEe-CCcCcHHHHHHH
Q 010968 239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY-TSMV-GRKSNLKFLISK 316 (496)
Q Consensus 239 ~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwf-tsmv-Gk~s~l~~L~~~ 316 (496)
++.+|++||- +++-|+. +..+|+|+.+.++.+|++ ..|| .+-.+.+..++.
T Consensus 120 ~~svDv~Vfc---------------LSLMGTn------------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~ 172 (219)
T PF05148_consen 120 DESVDVAVFC---------------LSLMGTN------------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKA 172 (219)
T ss_dssp TT-EEEEEEE---------------S---SS-------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHH
T ss_pred CCceeEEEEE---------------hhhhCCC------------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHH
Confidence 5789999974 2344544 567888999988888754 3455 444567777888
Q ss_pred HHHcCCeeEEEEEecCCC
Q 010968 317 LRKVGVTIVKTTEFVQGQ 334 (496)
Q Consensus 317 L~~~g~~~vk~~ed~qG~ 334 (496)
+...||.... +|.+..
T Consensus 173 ~~~~GF~~~~--~d~~n~ 188 (219)
T PF05148_consen 173 LKKLGFKLKS--KDESNK 188 (219)
T ss_dssp HHCTTEEEEE--EE--ST
T ss_pred HHHCCCeEEe--cccCCC
Confidence 9999997544 455543
No 244
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=89.38 E-value=1.1 Score=45.92 Aligned_cols=85 Identities=20% Similarity=0.127 Sum_probs=49.6
Q ss_pred CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHH--hcCCeeEEecCcHHHHHHHHHHHHHCCCCC
Q 010968 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHIS 166 (496)
Q Consensus 89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~--~~~~~v~avDIs~~AL~~A~~N~~~N~~L~ 166 (496)
|--.||+..+.--+..... . ..+.+.+|+=||+|.=-+..++.++ .++..|+++|+|++|++.|++=++...+|+
T Consensus 97 pYy~nY~~L~~lE~~~l~~--~-~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~ 173 (276)
T PF03059_consen 97 PYYPNYEKLVRLEYAALRI--H-AGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS 173 (276)
T ss_dssp TTHHHHHHHHHHHHH-HTT-----TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-
T ss_pred CcHHHHHHHHHHHHHHHhh--c-CCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc
Confidence 6678899888755432110 0 1123458999999975554444433 256889999999999999999887322488
Q ss_pred CcEEEEEccC
Q 010968 167 ELIEIRKVDN 176 (496)
Q Consensus 167 ~rI~~v~~d~ 176 (496)
.+++++.+|.
T Consensus 174 ~~m~f~~~d~ 183 (276)
T PF03059_consen 174 KRMSFITADV 183 (276)
T ss_dssp SSEEEEES-G
T ss_pred CCeEEEecch
Confidence 9999998874
No 245
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=88.98 E-value=0.94 Score=47.38 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=34.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHh----cCCeeEEecCcHHHHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVK 160 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~----~~~~v~avDIs~~AL~~A~~N~~ 160 (496)
...++|+|||+|-=-..|...+ ..+.++++|||.++|+.|..++.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 3479999999996333333333 24789999999999999999997
No 246
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=88.45 E-value=2.2 Score=45.33 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=35.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
....+|||||++|.-.-.|..+ +.+|+|||..+-+ .++..+ .+|+.+..+.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~-----~~L~~~----~~V~h~~~d~ 261 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA-----QSLMDT----GQVEHLRADG 261 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC-----HhhhCC----CCEEEEeccC
Confidence 3468999999999876555543 6799999976522 223323 4688877764
No 247
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=88.13 E-value=0.94 Score=48.31 Aligned_cols=58 Identities=19% Similarity=0.048 Sum_probs=49.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d 175 (496)
..+++|-=+|||.=++-++.+.+..++++-||||+|++.+++|++.|. . ..+.+++.|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~-~~~~v~n~D 110 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-G-EDAEVINKD 110 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-c-ccceeecch
Confidence 568999999999999999998887799999999999999999999983 2 345555544
No 248
>PRK11524 putative methyltransferase; Provisional
Probab=87.49 E-value=1.5 Score=44.55 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=37.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~ 161 (496)
....|||--+|||-- ++|+...+-+++|+||+++.+++|++-++.
T Consensus 208 ~GD~VLDPF~GSGTT--~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 208 PGDIVLDPFAGSFTT--GAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCEEEECCCCCcHH--HHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 456899999999976 455566688999999999999999988754
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=84.54 E-value=0.6 Score=39.68 Aligned_cols=55 Identities=22% Similarity=0.171 Sum_probs=15.0
Q ss_pred EEEcCchhHHHHHHHHHhcC---CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 120 FDIGTGANCIYPLLGASLLG---WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 120 LDIGTGSG~I~ilLa~~~~~---~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
|+|||..|.-...++..... .+++++|..+. .+.++++++.. ++.++++++.++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-~~~~~~~~~~g~s 58 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-GLSDRVEFIQGDS 58 (106)
T ss_dssp --------------------------EEEESS-------------G-GG-BTEEEEES-T
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-CCCCeEEEEEcCc
Confidence 68998888766666655443 37999999996 44555666555 3777899998873
No 250
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=82.69 E-value=1.1 Score=40.31 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=23.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs 148 (496)
.....+|||||.|.+--+|.. -+....|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNS--EGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHh--CCCCccccccc
Confidence 345799999999977555543 36677788874
No 251
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=81.38 E-value=0.95 Score=42.27 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=28.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDV 150 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~ 150 (496)
+..++|||||+.|.-.-.+..+. +.++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45799999999998866666554 4689999999875
No 252
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=80.87 E-value=1.8 Score=45.23 Aligned_cols=58 Identities=17% Similarity=0.037 Sum_probs=44.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
...++|.=-|.|.-...++.++++.+++|+|.|++|++.|+++++.. .+++.++..+.
T Consensus 21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F 78 (310)
T PF01795_consen 21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNF 78 (310)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-G
T ss_pred CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccH
Confidence 45899988899988888888888899999999999999998887643 47899998863
No 253
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.86 E-value=40 Score=33.46 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=87.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
...|+|||+-.|.=.-.++.... +..|+|+||+|-. . . ..|.+++.|... +. +
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------~---~-~~V~~iq~d~~~--~~-----------~ 99 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------P---I-PGVIFLQGDITD--ED-----------T 99 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------c---C-CCceEEeeeccC--cc-----------H
Confidence 45899999998876555554443 3569999999832 1 2 238888888652 00 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
.. .|...+ ....+|+|||-+ + |++.-.-..++..
T Consensus 100 ~~---------------------------------~l~~~l--~~~~~DvV~sD~-a----------p~~~g~~~~Dh~r 133 (205)
T COG0293 100 LE---------------------------------KLLEAL--GGAPVDVVLSDM-A----------PNTSGNRSVDHAR 133 (205)
T ss_pred HH---------------------------------HHHHHc--CCCCcceEEecC-C----------CCcCCCccccHHH
Confidence 00 122221 234579999654 1 1111000111000
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCe---eEEEEEEeeCC
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSFVP 346 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t---~Rw~lAWsF~~ 346 (496)
-.......++-+..++.++|-|..-+=+......++..+++. |..|++.+-...+. -=++++|.|..
T Consensus 134 ----~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~-F~~v~~~KP~aSR~~S~E~y~v~~~~~~ 203 (205)
T COG0293 134 ----SMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL-FRKVKIFKPKASRKRSREIYLVAKGFKG 203 (205)
T ss_pred ----HHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh-hceeEEecCccccCCCceEEEEEecccc
Confidence 122223344445667788887766555567778888888763 66788777665553 34677777653
No 254
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=80.14 E-value=19 Score=37.42 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCC-eEEEEEeC-CcCcHHHHHHHHHHcCCee
Q 010968 283 ITRIIEDSVALKQTF-RWYTSMVG-RKSNLKFLISKLRKVGVTI 324 (496)
Q Consensus 283 I~riI~eS~~ll~~~-gwftsmvG-k~s~l~~L~~~L~~~g~~~ 324 (496)
+..+|.|+.++++.+ .||..+|- +.+.....+..|...||..
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV 286 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCee
Confidence 466777888766655 57778873 3334556777888899964
No 255
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=79.45 E-value=1.6 Score=43.17 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=29.5
Q ss_pred CCCeEEEEcCchh---HHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 115 DKVKGFDIGTGAN---CIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 115 ~~~~vLDIGTGSG---~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
++..|+++|+=.| .....+...+ ++.+|+|+||+...... .-++.++ +..+|+++++|..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp-~~~rI~~i~Gds~ 95 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP-MSPRITFIQGDSI 95 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc-ccCceEEEECCCC
Confidence 4678999999444 3333334444 56899999997654432 2233455 6789999999843
No 256
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=79.27 E-value=1.1 Score=48.83 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=48.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEccC
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDN 176 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r-I~~v~~d~ 176 (496)
..|.|+.||.|-.++-++. .+++|+|-|.+++++++-+.|+..|. +... |+++..|.
T Consensus 251 evv~D~FaGvGPfa~Pa~k--K~crV~aNDLNpesik~Lk~ni~lNk-v~~~~iei~Nmda 308 (495)
T KOG2078|consen 251 EVVCDVFAGVGPFALPAAK--KGCRVYANDLNPESIKWLKANIKLNK-VDPSAIEIFNMDA 308 (495)
T ss_pred chhhhhhcCcCccccchhh--cCcEEEecCCCHHHHHHHHHhccccc-cchhheeeecccH
Confidence 4689999999987666654 45999999999999999999999995 7665 99888774
No 257
>PHA01634 hypothetical protein
Probab=78.68 E-value=4.2 Score=37.95 Aligned_cols=46 Identities=13% Similarity=-0.060 Sum_probs=35.5
Q ss_pred CCCeEEEEcCchh--HHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968 115 DKVKGFDIGTGAN--CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (496)
Q Consensus 115 ~~~~vLDIGTGSG--~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~ 163 (496)
++.+|+|||.+.| +|+.+|. ..-.|+|+|.++...+..++|++.|+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~---GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR---GASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc---CccEEEEeccCHHHHHHHHHHhhhhe
Confidence 4568999997555 5554441 22479999999999999999999874
No 258
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=78.32 E-value=5.1 Score=43.18 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=42.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHH---HCCC-C-CCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVK---SNPH-I-SELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~---~N~~-L-~~rI~~v~~d~ 176 (496)
..++|=+|-|-|--.--| .++|+ -+++-+|.||++++.|++|.. .|++ + +.|++++..|.
T Consensus 290 a~~vLvlGGGDGLAlRel-lkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA 355 (508)
T COG4262 290 ARSVLVLGGGDGLALREL-LKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA 355 (508)
T ss_pred cceEEEEcCCchHHHHHH-HhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH
Confidence 458999999999554444 35675 589999999999999997642 2321 2 34788877663
No 259
>PRK13699 putative methylase; Provisional
Probab=78.29 E-value=6.6 Score=38.89 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=37.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N 162 (496)
....|||-=||||-. .+|+...+-+++|+|++++..+.|.+.++..
T Consensus 163 ~g~~vlDpf~Gsgtt--~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGST--CVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHH--HHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 345899999999976 3444556789999999999999998887653
No 260
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=77.09 E-value=7.7 Score=37.73 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=51.0
Q ss_pred CCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHH-hcCCeeEEecCcHHHHHHHHHHHH
Q 010968 82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVK 160 (496)
Q Consensus 82 g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~-~~~~~v~avDIs~~AL~~A~~N~~ 160 (496)
|.+.|+- .|++..+.+.+-+ .....||++|.|+|.|--.+.++ .++-.++++|.|++-+..-.+-.
T Consensus 27 GaI~PsS-------s~lA~~M~s~I~p-----esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~- 93 (194)
T COG3963 27 GAILPSS-------SILARKMASVIDP-----ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY- 93 (194)
T ss_pred eeecCCc-------HHHHHHHHhccCc-----ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-
Confidence 5677773 3556666554322 23468999999999998766554 45678999999999876543322
Q ss_pred HCCCCCCcEEEEEccC
Q 010968 161 SNPHISELIEIRKVDN 176 (496)
Q Consensus 161 ~N~~L~~rI~~v~~d~ 176 (496)
.-+.++++|.
T Consensus 94 ------p~~~ii~gda 103 (194)
T COG3963 94 ------PGVNIINGDA 103 (194)
T ss_pred ------CCccccccch
Confidence 1245666764
No 261
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=76.81 E-value=4.2 Score=40.60 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=32.0
Q ss_pred eEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHH
Q 010968 118 KGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK 160 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~ 160 (496)
+++|+.||.|.+. ++.+.-++ .+.|+|+++.|.+.-+.|..
T Consensus 2 ~~~dlFsG~Gg~~--~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFS--LGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHH--HHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHH--HHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 6899999999774 55555565 57899999999998888864
No 262
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=76.00 E-value=3.7 Score=41.69 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=26.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~ 150 (496)
+..+||++|+|+|..++ +++....++|+.+|+-..
T Consensus 86 ~~~~vlELGsGtglvG~-~aa~~~~~~v~ltD~~~~ 120 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGI-LAALLLGAEVVLTDLPKV 120 (248)
T ss_pred cceeEEEecCCccHHHH-HHHHHhcceeccCCchhh
Confidence 35689999999996554 455567899999998553
No 263
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=75.29 E-value=1.9 Score=47.58 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=74.7
Q ss_pred HHHHHHHHhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccC---C---------CCC----CCCCCCCCeEEEEcCc
Q 010968 62 RELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSN---I---------IPT----TSRNGDKVKGFDIGTG 125 (496)
Q Consensus 62 r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~---~---------i~~----~~~~~~~~~vLDIGTG 125 (496)
|.|+.+.+++++.+.|..-... .....+.+-.... . .|. .....++.+|||-=++
T Consensus 49 RdlSi~vir~~~~~~~~~~~~~---------~~~~~~~~~~se~~~e~~~~~~~~~~~~~t~~~~~~~~~~l~vLealsA 119 (525)
T KOG1253|consen 49 RDLSITVVRAFSNLRFKEGVAK---------TFSKKILKRGSETGKESLKETDSYNDSPKTAALLKREEKSLRVLEALSA 119 (525)
T ss_pred hhhHHHHHHHHHHHHHHhhhhh---------hhhHHHHHhhhcccccccccccccCCCccccchhhhccCcchHHHHhhh
Confidence 8899999999999987665432 1112222222110 0 000 0122356789999999
Q ss_pred hhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 126 ANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 126 SG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
||.=++-.+.+.++. +++|-|.++.+++.-++|++.|+ .++.++..+.|.
T Consensus 120 tGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~-v~~ive~~~~DA 170 (525)
T KOG1253|consen 120 TGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG-VEDIVEPHHSDA 170 (525)
T ss_pred hhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC-chhhcccccchH
Confidence 999988999999985 79999999999999999999995 777777776663
No 264
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=74.03 E-value=6.3 Score=40.49 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=37.7
Q ss_pred CeEEEEcCchh---HHHHHHHH-HhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968 117 VKGFDIGTGAN---CIYPLLGA-SLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (496)
Q Consensus 117 ~~vLDIGTGSG---~I~ilLa~-~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~ 178 (496)
...||||||-- -+- -+++ ..|+.+|+-||+||-++..|+.-+..++ ..+..++.+|..+
T Consensus 70 rQFLDlGsGlPT~~nvH-evAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVH-EVAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADLRD 132 (267)
T ss_dssp -EEEEET--S--SS-HH-HHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--TT-
T ss_pred ceEEEcccCCCCCCCHh-HHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCCCC
Confidence 47999999943 221 2333 3589999999999999999999888764 2468899999764
No 265
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=72.93 E-value=7.8 Score=34.53 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=31.8
Q ss_pred EEcCchhHHHHHHH----HHhcCCeeEEecCcHHHHHHHHHH--HHHCCCCCCcEEEEEc
Q 010968 121 DIGTGANCIYPLLG----ASLLGWSFVGSDMTDVALEWAEKN--VKSNPHISELIEIRKV 174 (496)
Q Consensus 121 DIGTGSG~I~ilLa----~~~~~~~v~avDIs~~AL~~A~~N--~~~N~~L~~rI~~v~~ 174 (496)
|||++.|.....+. ...++.+++++|-+|..++..++| +..|+ ....++++..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~-~~~~~~~~~~ 59 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND-KDGEVEFHPY 59 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT-TSTTGGEEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC-CCceEEEEEe
Confidence 89999994333332 234678999999999999999999 77774 3334666554
No 266
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=72.25 E-value=19 Score=37.83 Aligned_cols=57 Identities=16% Similarity=0.029 Sum_probs=48.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 117 VKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
...+|.=-|.|.-+-.+..+++. .+++|+|.|+.|++.|++....++ +|+.+++.+.
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F 82 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNF 82 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcH
Confidence 68999888999888888888875 469999999999999999988753 7999998863
No 267
>PRK10458 DNA cytosine methylase; Provisional
Probab=71.40 E-value=16 Score=40.41 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=43.5
Q ss_pred cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHH
Q 010968 91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNV 159 (496)
Q Consensus 91 R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~ 159 (496)
+..-+..+.+++... |.. ......+++|+-||.|.+. ++.+.-+. .+.++|+++.|.+.=+.|.
T Consensus 66 ~~~~~~~~~~~~~~~--~~~-~~~~~~~~iDLFsGiGGl~--lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 66 SEAEFAHLQTLLPKP--PAH-HPHYAFRFIDLFAGIGGIR--RGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred cHHHHHHHHHhcccC--ccc-CcCCCceEEEeCcCccHHH--HHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 344555677777542 111 1234679999999999774 54454455 4688999999988888775
No 268
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=67.60 E-value=17 Score=38.08 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=29.6
Q ss_pred eEEEEcCchhHHH-HHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968 118 KGFDIGTGANCIY-PLLGASLLGWSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 118 ~vLDIGTGSG~I~-ilLa~~~~~~~v~avDIs~~AL~~A~~ 157 (496)
+++=+|+|.=.+. +.+++.....+|+++|++++-|+.|++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 7999999863332 333444444799999999999999977
No 269
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=67.25 E-value=6.3 Score=39.17 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=34.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhc--------CCeeEEecCcHHHHHHHHHHHHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLL--------GWSFVGSDMTDVALEWAEKNVKS 161 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~--------~~~v~avDIs~~AL~~A~~N~~~ 161 (496)
.+.+|+++|.|+|-++.-++..+. ..+++.+|+|+...+.-++.+..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 357999999999988877665432 35899999999988887777654
No 270
>PRK00536 speE spermidine synthase; Provisional
Probab=65.91 E-value=10 Score=38.73 Aligned_cols=77 Identities=12% Similarity=-0.097 Sum_probs=52.8
Q ss_pred HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968 71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (496)
Q Consensus 71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~ 150 (496)
..||.-+-++ ++.. + ++-+++. .+.|.. +|-+ .-.++.+||=||-|-|..+--+.+ .+. +|+.||||++
T Consensus 37 ~~fGr~LvLD-~~~~-t--e~dEfiY--HEmLvH--ppl~-~h~~pk~VLIiGGGDGg~~REvLk-h~~-~v~mVeID~~ 105 (262)
T PRK00536 37 KDFGEIAMLN-KQLL-F--KNFLHIE--SELLAH--MGGC-TKKELKEVLIVDGFDLELAHQLFK-YDT-HVDFVQADEK 105 (262)
T ss_pred cccccEEEEe-eeee-e--cchhhhH--HHHHHH--HHHh-hCCCCCeEEEEcCCchHHHHHHHC-cCC-eeEEEECCHH
Confidence 4678877777 6664 3 4555554 344432 1111 123567999999999988766654 344 9999999999
Q ss_pred HHHHHHHH
Q 010968 151 ALEWAEKN 158 (496)
Q Consensus 151 AL~~A~~N 158 (496)
.++.|++-
T Consensus 106 Vv~~~k~~ 113 (262)
T PRK00536 106 ILDSFISF 113 (262)
T ss_pred HHHHHHHH
Confidence 99999983
No 271
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=62.59 E-value=16 Score=36.47 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=33.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~ 161 (496)
...++||.|+|-|-|.--|..... -+|..+|-.+..++.|++.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcc
Confidence 346899999999998765543332 4899999999999999987654
No 272
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.09 E-value=14 Score=38.29 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=31.1
Q ss_pred EEEEcCchhHHHHHHHHHhcCCee-EEecCcHHHHHHHHHHH
Q 010968 119 GFDIGTGANCIYPLLGASLLGWSF-VGSDMTDVALEWAEKNV 159 (496)
Q Consensus 119 vLDIGTGSG~I~ilLa~~~~~~~v-~avDIs~~AL~~A~~N~ 159 (496)
++|+-||.|.+. ++.+..+.++ .++|+++.|++.-+.|.
T Consensus 1 vidLF~G~GG~~--~Gl~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIR--LGFEQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHH--HHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 589999999774 5555566765 67999999999888885
No 273
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=58.68 E-value=18 Score=33.85 Aligned_cols=75 Identities=8% Similarity=0.064 Sum_probs=40.1
Q ss_pred EEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHH-HHHHHHHHc
Q 010968 242 FDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLK-FLISKLRKV 320 (496)
Q Consensus 242 FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~-~L~~~L~~~ 320 (496)
+|+|++=|||.-...... .....+.+- ...=+.++..++.++.++++++|.+...++...... .+..++...
T Consensus 1 VdliitDPPY~~~~~~~~------~~~~~~~~~-~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNN------YFDYGDNKN-HEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIF 73 (231)
T ss_dssp EEEEEE---TSSSCS-----------CSCHCCH-HHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcch------hhhccCCCC-HHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHh
Confidence 599999999987544100 000000000 001266888899999999999999999988443322 333334444
Q ss_pred C-Ce
Q 010968 321 G-VT 323 (496)
Q Consensus 321 g-~~ 323 (496)
| +.
T Consensus 74 g~~~ 77 (231)
T PF01555_consen 74 GGFF 77 (231)
T ss_dssp TT-E
T ss_pred hhhh
Confidence 6 53
No 274
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=57.19 E-value=9.2 Score=42.49 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=34.9
Q ss_pred EEEecCC-CeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHH
Q 010968 76 NWWIPDG-QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGA 135 (496)
Q Consensus 76 ~~~Vp~g-~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~ 135 (496)
.|.+|.| ...|. .-..||+.|.+++... ..++.-..+||+|||+|-.+..|..
T Consensus 84 ~~~FPgggt~F~~--Ga~~Yid~i~~~~~~~-----~~~g~iR~~LDvGcG~aSF~a~l~~ 137 (506)
T PF03141_consen 84 KFRFPGGGTMFPH--GADHYIDQIAEMIPLI-----KWGGGIRTALDVGCGVASFGAYLLE 137 (506)
T ss_pred EEEeCCCCccccC--CHHHHHHHHHHHhhcc-----ccCCceEEEEeccceeehhHHHHhh
Confidence 4566643 34443 4468999999998642 1123345799999999987766643
No 275
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=54.77 E-value=6.6 Score=40.01 Aligned_cols=43 Identities=35% Similarity=0.301 Sum_probs=28.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~ 159 (496)
..++||||||.. |+.+|.+...--+|+.+|..+..++.-++=+
T Consensus 57 g~~llDiGsGPt-iy~~lsa~~~f~~I~l~dy~~~N~~el~kWl 99 (256)
T PF01234_consen 57 GETLLDIGSGPT-IYQLLSACEWFEEIVLSDYSEQNREELEKWL 99 (256)
T ss_dssp EEEEEEES-TT---GGGTTGGGTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCcH-HHhhhhHHHhhcceEEeeccHhhHHHHHHHH
Confidence 458999999995 6665544322237999999998887665544
No 276
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=54.71 E-value=62 Score=36.76 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEE
Q 010968 280 RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW 342 (496)
Q Consensus 280 l~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAW 342 (496)
.+|+..|.+ +.++++.+++ ++....++.-|.+.||...+... .|+++-|.+|+
T Consensus 186 ~~~~~~l~~----~~~~~~~~~t----~t~a~~vr~~l~~~GF~v~~~~~--~g~kr~~~~~~ 238 (662)
T PRK01747 186 PNLFNALAR----LARPGATLAT----FTSAGFVRRGLQEAGFTVRKVKG--FGRKREMLVGE 238 (662)
T ss_pred HHHHHHHHH----HhCCCCEEEE----eehHHHHHHHHHHcCCeeeecCC--Cchhhhhhheh
Confidence 355555544 5555655443 46788999999999996444322 24444566664
No 277
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=54.58 E-value=20 Score=38.92 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=33.5
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N 158 (496)
..++|+|.|-|-++-.|.. .++..|.|+|=|..+.+-|++-
T Consensus 155 ~~vvD~GaG~G~LSr~lSl-~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSL-GYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CeeEEcCCCchHHHHHHhh-ccCceEEEeccchHHHHHHHHH
Confidence 4799999999998877754 3688999999998877777653
No 278
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=54.11 E-value=18 Score=38.48 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=48.6
Q ss_pred cEEEecCCCeeCCCCCcHhHHHHHHHHhccCC-----CCCC-CCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968 75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNI-----IPTT-SRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (496)
Q Consensus 75 L~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~-----i~~~-~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs 148 (496)
-.+-||+..+++- |...++. .++=++-... +... ..+++.+-|.=+| |-|-+++.+|+.+- ++|+|+|++
T Consensus 124 eyv~v~~~~~~~i-P~~~d~~-~aApllCaGiT~y~alk~~~~~pG~~V~I~G~G-GlGh~avQ~Aka~g-a~Via~~~~ 199 (339)
T COG1064 124 EYVVVPARYVVKI-PEGLDLA-EAAPLLCAGITTYRALKKANVKPGKWVAVVGAG-GLGHMAVQYAKAMG-AEVIAITRS 199 (339)
T ss_pred eEEEEchHHeEEC-CCCCChh-hhhhhhcCeeeEeeehhhcCCCCCCEEEEECCc-HHHHHHHHHHHHcC-CeEEEEeCC
Confidence 3467787777776 5555544 2333332211 0000 0123334455555 66678888887654 999999999
Q ss_pred HHHHHHHHHH
Q 010968 149 DVALEWAEKN 158 (496)
Q Consensus 149 ~~AL~~A~~N 158 (496)
++-++.|++=
T Consensus 200 ~~K~e~a~~l 209 (339)
T COG1064 200 EEKLELAKKL 209 (339)
T ss_pred hHHHHHHHHh
Confidence 9999998764
No 279
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=54.03 E-value=25 Score=36.79 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=38.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
+..|+=+|-- -.-++.++.....-++.-+|||+..++.-.+-++..+ ++ .|+...-|..
T Consensus 153 gK~I~vvGDD-DLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g-~~-~ie~~~~Dlr 211 (354)
T COG1568 153 GKEIFVVGDD-DLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG-YN-NIEAFVFDLR 211 (354)
T ss_pred CCeEEEEcCc-hhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC-cc-chhheeehhc
Confidence 3458878732 2233333322233489999999999999999998874 53 3666666644
No 280
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=51.68 E-value=6.6 Score=43.36 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=40.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~ 161 (496)
....+|=+|-|+|.+..-|-..+|..+++|++|+|++++.|+.+...
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f 341 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGF 341 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhch
Confidence 45678888999998877776678889999999999999999998853
No 281
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=51.65 E-value=21 Score=37.18 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=33.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK 160 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~ 160 (496)
..+++|+-||.|.+- ++-+.-+. -+.++||++.|++.=+.|..
T Consensus 3 ~~~~idLFsG~GG~~--lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLS--LGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHH--HHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 468999999999874 55555454 46899999999988877764
No 282
>PRK05854 short chain dehydrogenase; Provisional
Probab=51.02 E-value=42 Score=34.11 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=41.1
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|+++| |+..++..+ .+++|+.+..+++.++-+...+.... -..++.++..|..
T Consensus 15 k~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~ 75 (313)
T PRK05854 15 KRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV-PDAKLSLRALDLS 75 (313)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEEecCC
Confidence 46777787765 787777665 47899999999887776666654431 2346888888754
No 283
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=49.93 E-value=17 Score=37.14 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=34.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N 158 (496)
...++|||||-|.|...|..+- --+++.+|.|-.+++.++.-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc
Confidence 3579999999999988886543 23789999999999988653
No 284
>PTZ00357 methyltransferase; Provisional
Probab=47.92 E-value=55 Score=38.33 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=41.5
Q ss_pred CCeEEEEcCchhHHHHHHHH--Hh--cCCeeEEecCcHHHHHHHHHHHHHCCCC-------CCcEEEEEccCCC
Q 010968 116 KVKGFDIGTGANCIYPLLGA--SL--LGWSFVGSDMTDVALEWAEKNVKSNPHI-------SELIEIRKVDNSE 178 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~--~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L-------~~rI~~v~~d~~~ 178 (496)
...|+=+|+|=|-+--.... +. -..+|+|+|-++.++.+...+...+... .++|+++..|.+.
T Consensus 701 ~vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~ 774 (1072)
T PTZ00357 701 TLHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRT 774 (1072)
T ss_pred eEEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccc
Confidence 35789999999965433222 21 2468999999977766666554322223 4579999998664
No 285
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=47.07 E-value=38 Score=32.84 Aligned_cols=55 Identities=24% Similarity=0.059 Sum_probs=38.4
Q ss_pred eEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
++|=.|.++ .|+..++.++ .+++|+.++.+++.++.+...++.. .++.++..|..
T Consensus 2 ~vlItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~Dv~ 58 (259)
T PRK08340 2 NVLVTASSR-GIGFNVARELLKKGARVVISSRNEENLEKALKELKEY----GEVYAVKADLS 58 (259)
T ss_pred eEEEEcCCc-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEcCCC
Confidence 356677654 4888887765 4689999999998887776666443 24677777753
No 286
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=46.90 E-value=6.6 Score=27.11 Aligned_cols=9 Identities=44% Similarity=1.202 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q 010968 15 TIHPKNKYS 23 (496)
Q Consensus 15 ~mHprN~y~ 23 (496)
..||||+|-
T Consensus 3 r~hprNrYV 11 (28)
T PF12368_consen 3 RVHPRNRYV 11 (28)
T ss_pred ccCcchhhH
Confidence 369999995
No 287
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=46.80 E-value=61 Score=34.89 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=43.8
Q ss_pred HHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh----c----CCeeEEecCcHHHHHHHHHHHHHC
Q 010968 96 HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL----L----GWSFVGSDMTDVALEWAEKNVKSN 162 (496)
Q Consensus 96 ~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~----~----~~~v~avDIs~~AL~~A~~N~~~N 162 (496)
+|+..++.....| .+..+++||.|.|.++.-+++.. | ..++.-+|+|++..+.=+++.+..
T Consensus 64 ~~~~~~wq~~g~p------~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 64 EQFLQLWQELGRP------APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHhcCC------CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 4666666543211 35689999999999887766543 2 579999999999888777777654
No 288
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=45.99 E-value=33 Score=36.52 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=43.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCc
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPS 182 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~ 182 (496)
...+|+|-|.|.+.-.+...+|. +-+++.+...+-.++.+.. .+ |+.+-+|..+.+|.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq~~P~ 236 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQDTPK 236 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CC-----cceecccccccCCC
Confidence 47999999999998888876654 7788888877777777765 32 66777776665554
No 289
>PRK05599 hypothetical protein; Provisional
Probab=43.67 E-value=52 Score=31.91 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=38.5
Q ss_pred EEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 119 GFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 119 vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
+|=.|.++| |+..++..+ .+++|+.++.+++.++.+.+.++..+ ..++.++..|..
T Consensus 3 vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~ 59 (246)
T PRK05599 3 ILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG--ATSVHVLSFDAQ 59 (246)
T ss_pred EEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc--CCceEEEEcccC
Confidence 566677665 777777654 36899999999988877666665542 234777777754
No 290
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=43.53 E-value=1.2e+02 Score=29.07 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=41.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..++|=.|.+ |.|+..++..+ .+++|+.++.+++.++.....++..+ .++.++..|..
T Consensus 11 ~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 70 (256)
T PRK06124 11 GQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG---GAAEALAFDIA 70 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCC
Confidence 3578888854 55888877665 47999999999888776666665542 45778888754
No 291
>PRK08303 short chain dehydrogenase; Provisional
Probab=43.39 E-value=62 Score=32.99 Aligned_cols=58 Identities=12% Similarity=-0.008 Sum_probs=37.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcH----------HHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTD----------VALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~----------~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
...+|-.|.++| |+..++..+ .+++|+.++.+. +.++.+.+-++.. ..++.++..|..
T Consensus 8 ~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 77 (305)
T PRK08303 8 GKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA---GGRGIAVQVDHL 77 (305)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc---CCceEEEEcCCC
Confidence 357888997766 888877765 478999998873 3444444444433 245667777754
No 292
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=43.39 E-value=53 Score=34.33 Aligned_cols=43 Identities=16% Similarity=-0.009 Sum_probs=32.1
Q ss_pred CCeEEEEcCch-hHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 010968 116 KVKGFDIGTGA-NCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (496)
Q Consensus 116 ~~~vLDIGTGS-G~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N 158 (496)
..+||.+|+|+ |-+.+.+++...-.+++++|.+++.++.+++.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 35799999887 66666666654334699999999988888764
No 293
>PRK06125 short chain dehydrogenase; Provisional
Probab=42.99 E-value=88 Score=30.24 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=39.9
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|+++| |+..++..+ .+++|++++.+++.++.+...+... ...++.++..|..
T Consensus 8 k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~D~~ 67 (259)
T PRK06125 8 KRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA--HGVDVAVHALDLS 67 (259)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCC
Confidence 46777786544 777776654 4789999999988777666666543 2346777777753
No 294
>PRK07102 short chain dehydrogenase; Provisional
Probab=42.52 E-value=1.1e+02 Score=29.11 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=39.6
Q ss_pred eEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
+++=.|+ +|.|+..++.++ .+++|++++.+++.++...+++...+ ..++.++..|..
T Consensus 3 ~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~ 61 (243)
T PRK07102 3 KILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG--AVAVSTHELDIL 61 (243)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc--CCeEEEEecCCC
Confidence 5677774 456888777765 36899999999987765555554432 346888888854
No 295
>PRK06172 short chain dehydrogenase; Provisional
Probab=41.75 E-value=1.4e+02 Score=28.61 Aligned_cols=57 Identities=12% Similarity=-0.018 Sum_probs=42.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhc--CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASLL--GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~--~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|++ |.|+..++..+. +++|++++.+++.++-+.+.++.. ..++.++..|..
T Consensus 8 k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 66 (253)
T PRK06172 8 KVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA---GGEALFVACDVT 66 (253)
T ss_pred CEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEcCCC
Confidence 578888865 458888877653 689999999998877766666543 356888888864
No 296
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=41.21 E-value=9.4 Score=38.41 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhHhcCcE---EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHH
Q 010968 60 ATRELTRVLLLHDHGLN---WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS 136 (496)
Q Consensus 60 A~r~Lt~aLL~~ffGL~---~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~ 136 (496)
-.+.|.+.+|.-||... -.+..|...=--| .-...+|...... -+..+.++||||.|.|-|...++-.
T Consensus 63 l~h~l~~sils~fms~TdING~lgrGsMFifSe------~QF~klL~i~~p~---w~~~~~~lLDlGAGdGeit~~m~p~ 133 (288)
T KOG3987|consen 63 LWHALARSILSFFMSQTDINGFLGRGSMFIFSE------EQFRKLLVIGGPA---WGQEPVTLLDLGAGDGEITLRMAPT 133 (288)
T ss_pred HHHHHHHHHHHHHhhhhccccccccCceEEecH------HHHHHHHhcCCCc---cCCCCeeEEeccCCCcchhhhhcch
Confidence 34777777777776542 2233332221111 1123344322111 1234689999999999986665432
Q ss_pred hcCCeeEEecCcHHHHHHHH
Q 010968 137 LLGWSFVGSDMTDVALEWAE 156 (496)
Q Consensus 137 ~~~~~v~avDIs~~AL~~A~ 156 (496)
+ -+|+|+|.|..|...-+
T Consensus 134 f--eevyATElS~tMr~rL~ 151 (288)
T KOG3987|consen 134 F--EEVYATELSWTMRDRLK 151 (288)
T ss_pred H--HHHHHHHhhHHHHHHHh
Confidence 2 26899999998876544
No 297
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=40.77 E-value=85 Score=31.77 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=34.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH---HHHHCCCC----CCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK---NVKSNPHI----SELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~---N~~~N~~L----~~rI~~v~~d~~ 177 (496)
..+|||.=+|-|.=++.++. .+.+|+++|.||-...+-+. ++.....+ ..||+++.+|..
T Consensus 76 ~~~VLDaTaGLG~Da~vlA~--~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 76 RPSVLDATAGLGRDAFVLAS--LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp ---EEETT-TTSHHHHHHHH--HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred CCEEEECCCcchHHHHHHHc--cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 34899998899877777764 37899999999976655543 33333212 248999988743
No 298
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=40.23 E-value=7.1 Score=41.02 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=44.4
Q ss_pred CeEEEEcCchhHHHH-HHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYP-LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~i-lLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..|+|+=.|-|..-. .|- ......|+|+|++|.+++.-++|++.|+ +.+|-.++.+|..
T Consensus 196 eviVDLYAGIGYFTlpflV-~agAk~V~A~EwNp~svEaLrR~~~~N~-V~~r~~i~~gd~R 255 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLV-TAGAKTVFACEWNPWSVEALRRNAEANN-VMDRCRITEGDNR 255 (351)
T ss_pred chhhhhhcccceEEeehhh-ccCccEEEEEecCHHHHHHHHHHHHhcc-hHHHHHhhhcccc
Confidence 468898888885432 222 2233589999999999999999999995 8888777777643
No 299
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.99 E-value=1.5e+02 Score=28.16 Aligned_cols=57 Identities=18% Similarity=0.091 Sum_probs=40.5
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|. +|.|+..++..+ .+++|++++.++..++.....++.. ..++.++..|..
T Consensus 8 ~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 66 (239)
T PRK07666 8 KNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY---GVKVVIATADVS 66 (239)
T ss_pred CEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---CCeEEEEECCCC
Confidence 46788885 567888887765 4789999999988776655555433 246888888754
No 300
>PRK08339 short chain dehydrogenase; Provisional
Probab=39.93 E-value=1.4e+02 Score=29.27 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=41.2
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|.++| |+..++.++ .+++|+.++.+++.++.+.+.+... ...++.++..|..
T Consensus 9 k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~ 68 (263)
T PRK08339 9 KLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSE--SNVDVSYIVADLT 68 (263)
T ss_pred CEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCC
Confidence 46777777655 777777665 4789999999998887776666442 1246788888864
No 301
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=39.85 E-value=1.5e+02 Score=28.57 Aligned_cols=57 Identities=18% Similarity=0.043 Sum_probs=42.0
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.| |+|.|+..++..+ .+++|+.++.+.+.++.+...+...+ .++.++..|..
T Consensus 13 k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~Dl~ 71 (259)
T PRK08213 13 KTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG---IDALWIAADVA 71 (259)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEccCC
Confidence 4677778 5677998888765 36899999999888777666665432 46777888754
No 302
>PRK05867 short chain dehydrogenase; Provisional
Probab=39.70 E-value=1.5e+02 Score=28.42 Aligned_cols=57 Identities=14% Similarity=0.013 Sum_probs=41.3
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|.++| |+..++.++ .+++|++++.+++.++.....++..+ .++.++..|..
T Consensus 10 k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 68 (253)
T PRK05867 10 KRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG---GKVVPVCCDVS 68 (253)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCC
Confidence 47888887655 777777665 37899999999988877666665432 45777777754
No 303
>PRK07063 short chain dehydrogenase; Provisional
Probab=39.58 E-value=1.6e+02 Score=28.45 Aligned_cols=60 Identities=12% Similarity=0.075 Sum_probs=42.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..++|=.|.++ .|+..++..+ .+++|+.++.+++.++.....+.... ...++.++..|..
T Consensus 7 ~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~ 68 (260)
T PRK07063 7 GKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV-AGARVLAVPADVT 68 (260)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEEccCC
Confidence 34788888765 4777777665 47899999999988877666665421 2346788888754
No 304
>PRK06940 short chain dehydrogenase; Provisional
Probab=39.20 E-value=82 Score=31.18 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 125 GANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 125 GSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
|+|.|+..++..+ .+++|+++|.+++.++.+.+.++.. ..++.++..|..
T Consensus 9 Ga~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 59 (275)
T PRK06940 9 GAGGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA---GFDVSTQEVDVS 59 (275)
T ss_pred CCChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEeecC
Confidence 3356888887765 3689999999988776555544432 235777888754
No 305
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=38.90 E-value=4.3e+02 Score=26.80 Aligned_cols=129 Identities=11% Similarity=0.058 Sum_probs=74.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~ 194 (496)
..+||-||..||.--.-++--. +.-.|+|||.++.+.+---.-+++-+ +|--+..|... |.
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~----NIiPIl~DAr~--P~------------ 135 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP----NIIPILEDARH--PE------------ 135 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST----TEEEEES-TTS--GG------------
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC----ceeeeeccCCC--hH------------
Confidence 3589999999997644444322 35689999999976554433333221 25555566432 11
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (496)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv 274 (496)
-+..++ +.+|+|+|.=. .|..
T Consensus 136 ------------------------------------~Y~~lv---~~VDvI~~DVa----------Qp~Q---------- 156 (229)
T PF01269_consen 136 ------------------------------------KYRMLV---EMVDVIFQDVA----------QPDQ---------- 156 (229)
T ss_dssp ------------------------------------GGTTTS-----EEEEEEE-S----------STTH----------
T ss_pred ------------------------------------Hhhccc---ccccEEEecCC----------ChHH----------
Confidence 122222 47999987531 1111
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCc----------HHHHHHHHHHcCCeeEEEEEe
Q 010968 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSN----------LKFLISKLRKVGVTIVKTTEF 330 (496)
Q Consensus 275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~----------l~~L~~~L~~~g~~~vk~~ed 330 (496)
.+-++..+..+++.+|.+..++- ..+ +..-++.|++.|+........
T Consensus 157 --------a~I~~~Na~~fLk~gG~~~i~iK-a~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 157 --------ARIAALNARHFLKPGGHLIISIK-ARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp --------HHHHHHHHHHHEEEEEEEEEEEE-HHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred --------HHHHHHHHHhhccCCcEEEEEEe-cCcccCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 23455667778999999988873 211 234467888888877666543
No 306
>PRK06949 short chain dehydrogenase; Provisional
Probab=38.67 E-value=1.6e+02 Score=28.05 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=41.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..++|=.|. +|.|+..++..+ .+++|++++.+++.++.....+... ..++.++..|..
T Consensus 9 ~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 68 (258)
T PRK06949 9 GKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE---GGAAHVVSLDVT 68 (258)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEecCC
Confidence 357888884 456888887765 4689999999998877666655433 235777877754
No 307
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=38.18 E-value=55 Score=34.90 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=38.6
Q ss_pred CCCCCeEEEEcCchhHHHHHHHHHh-------cCCeeEEecC----cHHHHHHHHHHHH
Q 010968 113 NGDKVKGFDIGTGANCIYPLLGASL-------LGWSFVGSDM----TDVALEWAEKNVK 160 (496)
Q Consensus 113 ~~~~~~vLDIGTGSG~I~ilLa~~~-------~~~~v~avDI----s~~AL~~A~~N~~ 160 (496)
+.+.+.|+|+|.|.|.=.+.|...+ |..++||++- +...++.+.+++.
T Consensus 108 g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~ 166 (374)
T PF03514_consen 108 GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA 166 (374)
T ss_pred cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence 3467899999999998777775543 3469999999 8899999888864
No 308
>PRK07814 short chain dehydrogenase; Provisional
Probab=38.18 E-value=1.6e+02 Score=28.69 Aligned_cols=57 Identities=9% Similarity=0.111 Sum_probs=40.7
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|. +|.|+..++..+ .+++|++++.+++.++...+.++.. ..++.++..|..
T Consensus 11 ~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 69 (263)
T PRK07814 11 QVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA---GRRAHVVAADLA 69 (263)
T ss_pred CEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 46888885 456888877654 4789999999988777665555432 246788878754
No 309
>PRK07791 short chain dehydrogenase; Provisional
Probab=38.17 E-value=68 Score=32.05 Aligned_cols=57 Identities=14% Similarity=0.006 Sum_probs=37.0
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcH---------HHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTD---------VALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~---------~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|.++| |+..++.++ .+++++.+|.+. +.++.+...++.. ..++.++..|..
T Consensus 7 k~~lITGas~G-IG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 74 (286)
T PRK07791 7 RVVIVTGAGGG-IGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA---GGEAVANGDDIA 74 (286)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc---CCceEEEeCCCC
Confidence 47888887765 777777665 478899888765 5555444444433 235667777754
No 310
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=38.06 E-value=59 Score=34.44 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=32.0
Q ss_pred CCCeEEEEcCchhH-HHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968 115 DKVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (496)
Q Consensus 115 ~~~~vLDIGTGSG~-I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~ 161 (496)
.+-+|+-||+| || +.+.| .+. ..+|.+||+++.-+++-+-.++.
T Consensus 63 ~ghrivtigSG-Gcn~L~yl-sr~-Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 63 IGHRIVTIGSG-GCNMLAYL-SRA-PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCcEEEEecCC-cchHHHHh-hcC-CceeEEEeCCHHHHHHHHHHHHH
Confidence 45689999999 67 54434 333 46899999999988877666543
No 311
>PRK07677 short chain dehydrogenase; Provisional
Probab=37.81 E-value=1.6e+02 Score=28.34 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=39.3
Q ss_pred eEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
++|=.|+++| |+..++..+ .+++|++++.+++.++.+...+... ..++.++..|..
T Consensus 3 ~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 60 (252)
T PRK07677 3 VVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF---PGQVLTVQMDVR 60 (252)
T ss_pred EEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEecCC
Confidence 5777787655 777776654 4789999999988776665555433 246888888754
No 312
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=37.66 E-value=88 Score=30.36 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=35.8
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|+++| |+..++.++ .+++|++++.+.. +.+.+.++.. ..++.++..|..
T Consensus 9 k~~lItGas~g-IG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~---~~~~~~~~~Dl~ 65 (251)
T PRK12481 9 KVAIITGCNTG-LGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL---GRKFHFITADLI 65 (251)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc---CCeEEEEEeCCC
Confidence 57888897665 888887765 4789999887642 2222333332 346778888754
No 313
>PRK07576 short chain dehydrogenase; Provisional
Probab=37.53 E-value=1.6e+02 Score=28.73 Aligned_cols=57 Identities=9% Similarity=-0.035 Sum_probs=38.8
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|. +|.|+..++..+ .+++|++++.+++.++-....+... ..++.++..|..
T Consensus 10 k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 68 (264)
T PRK07576 10 KNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA---GPEGLGVSADVR 68 (264)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---CCceEEEECCCC
Confidence 47888884 566888877655 4789999999988766554444432 235677777754
No 314
>PRK06914 short chain dehydrogenase; Provisional
Probab=36.68 E-value=1.7e+02 Score=28.50 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=39.4
Q ss_pred eEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.+|=.|.+ |.|+..++..+ .+++|++++.+++.++.....+...+ .+.++.++..|..
T Consensus 5 ~~lItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 64 (280)
T PRK06914 5 IAIVTGAS-SGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN-LQQNIKVQQLDVT 64 (280)
T ss_pred EEEEECCC-chHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCceeEEecCCC
Confidence 56777754 45777776654 36899999998887766555444332 3457888888864
No 315
>PRK07454 short chain dehydrogenase; Provisional
Probab=36.33 E-value=2e+02 Score=27.35 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=39.7
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|. +|.|+..++.++ .+++|++++.+++.++.....++. ...++.++..|..
T Consensus 7 k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~ 65 (241)
T PRK07454 7 PRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS---TGVKAAAYSIDLS 65 (241)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---CCCcEEEEEccCC
Confidence 46788885 566888887765 468999999998776555444433 2346888888754
No 316
>PRK07326 short chain dehydrogenase; Provisional
Probab=36.13 E-value=1.6e+02 Score=27.80 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=39.6
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=+|. +|.|+..++..+ .+++|++++.++..+......+... .++.++..|..
T Consensus 7 ~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~D~~ 64 (237)
T PRK07326 7 KVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK----GNVLGLAADVR 64 (237)
T ss_pred CEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc----CcEEEEEccCC
Confidence 56888885 566888887655 3789999999998776665554321 35778887754
No 317
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=35.79 E-value=17 Score=38.44 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=10.6
Q ss_pred cEEEEEECCCCc
Q 010968 241 QFDFCICNPPFF 252 (496)
Q Consensus 241 ~FDfImcNPPY~ 252 (496)
..|+||+||||-
T Consensus 135 eADIVVTNPPFS 146 (336)
T PF13651_consen 135 EADIVVTNPPFS 146 (336)
T ss_pred cCCEEEeCCCcH
Confidence 579999999994
No 318
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=35.50 E-value=23 Score=36.73 Aligned_cols=37 Identities=16% Similarity=-0.000 Sum_probs=26.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE 153 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~ 153 (496)
..+|||+|||+|.-++.+.. .....+...|.+.+.++
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~-~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFV-KGAVSVHFQDFNAEVLR 153 (282)
T ss_pred CceeEecCCcccccchhhhh-hccceeeeEecchhhee
Confidence 46899999999855444332 22378999999888773
No 319
>PRK08251 short chain dehydrogenase; Provisional
Probab=34.87 E-value=2e+02 Score=27.39 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=40.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhc--CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASLL--GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~--~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|+ +|.|+..++.++. +++|+.++.+++.++.....+.... -..++.++..|..
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 63 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY-PGIKVAVAALDVN 63 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCceEEEEEcCCC
Confidence 35777774 5668888877653 6899999999988776655544321 2346888888854
No 320
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=34.77 E-value=1.9e+02 Score=27.69 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=41.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..++|=.|. +|.|+..++.++ .+++|++++.+++.++.....++..+ .++.++..|..
T Consensus 10 ~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~D~~ 69 (255)
T PRK07523 10 GRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG---LSAHALAFDVT 69 (255)
T ss_pred CCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---ceEEEEEccCC
Confidence 357888884 567888887765 47899999999988776666665432 35777777754
No 321
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=34.72 E-value=78 Score=32.64 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=51.1
Q ss_pred CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (496)
Q Consensus 89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~ 159 (496)
++|.....+|.+.|.....+. .....+.+||==|||-|-++--+|.. +..+.|.|.|--|+-..+--.
T Consensus 31 ~ER~~~~~~I~~~L~~~~p~~-~~~~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiL 98 (270)
T PF07942_consen 31 EERDPCYSPILDELESLFPPA-GSDRSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFIL 98 (270)
T ss_pred HHHHHHHHHHHHHHHHhhccc-ccCCCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHH
Confidence 467777777887777643221 12335679999999999998888866 779999999999987776644
No 322
>PRK05872 short chain dehydrogenase; Provisional
Probab=34.70 E-value=67 Score=32.17 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=37.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
...+|=.|.++| |+..++..+ .+++|+.++.+++.++...+.+.. ..++..+..|..
T Consensus 9 gk~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~----~~~~~~~~~Dv~ 67 (296)
T PRK05872 9 GKVVVVTGAARG-IGAELARRLHARGAKLALVDLEEAELAALAAELGG----DDRVLTVVADVT 67 (296)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----CCcEEEEEecCC
Confidence 357888886654 777777765 478999999998877654443321 234555556643
No 323
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.53 E-value=1.9e+02 Score=30.46 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=45.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.+..||==|.|+| ++-.++.++ .+.+++..||+.+..+...+.+++++ ++.....|..
T Consensus 37 ~g~~vLITGgg~G-lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis 96 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG----EAKAYTCDIS 96 (300)
T ss_pred cCCEEEEeCCCch-HHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC----ceeEEEecCC
Confidence 3457888899988 777777765 35789999999999999988888763 6777888754
No 324
>PRK06181 short chain dehydrogenase; Provisional
Probab=34.25 E-value=2e+02 Score=27.74 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=38.3
Q ss_pred eEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
++|=.|+. |.|+..++..+ .+++|++++.++..++.+...+... ..++.++..|..
T Consensus 3 ~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~ 60 (263)
T PRK06181 3 VVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH---GGEALVVPTDVS 60 (263)
T ss_pred EEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 46666744 55887776654 4689999999988777665555543 246777777754
No 325
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=34.11 E-value=69 Score=34.50 Aligned_cols=42 Identities=14% Similarity=-0.013 Sum_probs=30.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~ 160 (496)
.+||-| |++||-.+.++..-| .+|+|||+||.=+.+.+--+.
T Consensus 37 d~vl~I-tSaG~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 37 DRVLTI-TSAGCNALDYLLAGP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CeEEEE-ccCCchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 478999 566888777765544 699999999987766655443
No 326
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=34.05 E-value=1.9e+02 Score=27.33 Aligned_cols=57 Identities=18% Similarity=0.094 Sum_probs=39.8
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|. +|.|+..++..+ .+++|++++.++..+..+...+...+ .++.++..|..
T Consensus 7 ~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~ 65 (251)
T PRK12826 7 RVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG---GKARARQVDVR 65 (251)
T ss_pred CEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCC
Confidence 46787775 466887777655 36899999999877766666655432 35788888754
No 327
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=33.82 E-value=1.7e+02 Score=28.25 Aligned_cols=58 Identities=16% Similarity=0.065 Sum_probs=39.4
Q ss_pred eEEEEcCchhHHHHHHHHHh------cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 118 KGFDIGTGANCIYPLLGASL------LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~------~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.+|=.|+++| |+..++.++ .+++|+.++.+++.++.+.+.++... ...++.++..|..
T Consensus 2 ~vlItGas~G-IG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~ 65 (256)
T TIGR01500 2 VCLVTGASRG-FGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAER-SGLRVVRVSLDLG 65 (256)
T ss_pred EEEEecCCCc-hHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcC-CCceEEEEEeccC
Confidence 3566776655 776666554 47899999999988887776665421 1235777777754
No 328
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=33.78 E-value=1.1e+02 Score=29.82 Aligned_cols=58 Identities=5% Similarity=-0.134 Sum_probs=36.6
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEec-CcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSD-MTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avD-Is~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|.++| |+..++.++ .+++|+.+. .+++.++...+.++.. ...++.++..|..
T Consensus 9 k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~ 69 (260)
T PRK08416 9 KTLVISGGTRG-IGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK--YGIKAKAYPLNIL 69 (260)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh--cCCceEEEEcCCC
Confidence 46777787765 777777665 478888775 4566655444444332 2346788888754
No 329
>PRK07904 short chain dehydrogenase; Provisional
Probab=33.00 E-value=1.8e+02 Score=28.41 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=41.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHHh--c-CCeeEEecCcHHH-HHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 115 DKVKGFDIGTGANCIYPLLGASL--L-GWSFVGSDMTDVA-LEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~--~-~~~v~avDIs~~A-L~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
...++|=.|+++| |+..++.++ . +++|++++.+++. ++.+.+.++..+ ..++.++..|..
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~--~~~v~~~~~D~~ 70 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG--ASSVEVIDFDAL 70 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC--CCceEEEEecCC
Confidence 4457899998654 888888764 2 4899999998774 665555555442 236888888754
No 330
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=32.33 E-value=1.4e+02 Score=28.28 Aligned_cols=43 Identities=23% Similarity=0.085 Sum_probs=27.4
Q ss_pred EEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968 119 GFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (496)
Q Consensus 119 vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~ 161 (496)
|.=||+|.=.-++.......+.+|+.+|.++++++.+++.++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 3346665432222222234589999999999999999888765
No 331
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=32.00 E-value=2.4e+02 Score=27.38 Aligned_cols=57 Identities=11% Similarity=-0.036 Sum_probs=42.2
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|+++| |+..++.++ .+++++.++.+++.++.+..+.+..+ .++.++..|..
T Consensus 11 k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 69 (265)
T PRK07097 11 KIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG---IEAHGYVCDVT 69 (265)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCC
Confidence 47888888865 777776654 47899999999988887777766542 46888888754
No 332
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.95 E-value=26 Score=34.15 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=38.5
Q ss_pred CCeEEEEcCchhHHH-HHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968 116 KVKGFDIGTGANCIY-PLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~-ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N 162 (496)
..+|+++|-|--+++ +++|.+.+...|..+|=++++++.-++.+..|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 358999999976655 45566678899999999999999988887776
No 333
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=31.37 E-value=83 Score=27.01 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968 126 ANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 126 SG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~ 157 (496)
-|..++.+++... .+++++|.+++-++.+++
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh
Confidence 3555556776554 999999999999888865
No 334
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=31.22 E-value=2.1e+02 Score=29.30 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=28.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA 155 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A 155 (496)
+...+||||.-+|..--.+. +.....|+|+|+.-.-|.+-
T Consensus 79 k~kv~LDiGsSTGGFTd~lL-q~gAk~VyavDVG~~Ql~~k 118 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLL-QRGAKHVYAVDVGYGQLHWK 118 (245)
T ss_pred CCCEEEEecCCCccHHHHHH-HcCCcEEEEEEccCCccCHh
Confidence 45689999999997744333 33345899999976555443
No 335
>PRK06194 hypothetical protein; Provisional
Probab=31.03 E-value=1.5e+02 Score=29.12 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=38.8
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|.+ |.|+..++.++ .+++|+.+|.+++.++.....+... ..++.++..|..
T Consensus 7 k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 65 (287)
T PRK06194 7 KVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ---GAEVLGVRTDVS 65 (287)
T ss_pred CEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc---CCeEEEEECCCC
Confidence 467766654 56888887765 4789999999988776554444432 235777888754
No 336
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.59 E-value=99 Score=33.07 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=32.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHH
Q 010968 117 VKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~ 157 (496)
-++|=+|+|.=.++..|.++-.+ .+|+.+|+++..|+.|++
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 47999999975555555554444 699999999999999988
No 337
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.55 E-value=1e+02 Score=33.01 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=32.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHH
Q 010968 117 VKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~ 157 (496)
.++.=+|.|+=.++.+.+++..+ .+++|+||+++-.+.|++
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 46788888876676777777666 599999999999998864
No 338
>PRK05876 short chain dehydrogenase; Provisional
Probab=30.20 E-value=2.5e+02 Score=27.84 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=40.0
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|.++| |+..++..+ .+++|+.+|.++..++.+.+.++.. ..++.++..|..
T Consensus 7 k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~---~~~~~~~~~Dv~ 65 (275)
T PRK05876 7 RGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE---GFDVHGVMCDVR 65 (275)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEeCCCC
Confidence 46787787654 787877665 4789999999998877665555433 235777777754
No 339
>PRK07062 short chain dehydrogenase; Provisional
Probab=30.19 E-value=2.6e+02 Score=27.00 Aligned_cols=60 Identities=15% Similarity=-0.011 Sum_probs=41.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
...+|=.|+++| |+..++..+ .+++|++++.+++.++.+.+.+.... -..++.++..|..
T Consensus 8 ~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 69 (265)
T PRK07062 8 GRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKF-PGARLLAARCDVL 69 (265)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC-CCceEEEEEecCC
Confidence 347888886655 787777765 47899999999988877665554321 1235777777754
No 340
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=30.02 E-value=1.7e+02 Score=27.88 Aligned_cols=56 Identities=20% Similarity=0.084 Sum_probs=40.2
Q ss_pred eEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
++|=.|. +|.|+..++..+ .++++++++.+++.++.+...++..+ .++.++..|..
T Consensus 6 ~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 63 (258)
T PRK12429 6 VALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG---GKAIGVAMDVT 63 (258)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCC
Confidence 5665554 567888887765 37899999999988877666665442 46888888754
No 341
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=29.39 E-value=37 Score=32.61 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=33.5
Q ss_pred cCc-hhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 123 GTG-ANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 123 GTG-SG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
|+| ++.|+..++.++ .+++|+.++.+++.++-+-+.+... ...+ ++..|..
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~--~~~~--~~~~D~~ 54 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKE--YGAE--VIQCDLS 54 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHH--TTSE--EEESCTT
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHH--cCCc--eEeecCc
Confidence 556 334777777765 4799999999999876655555443 2233 4667653
No 342
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=29.20 E-value=89 Score=26.49 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=28.9
Q ss_pred CchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 124 TGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 124 TGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
||.|-++..++..+ .++.++.+|.+++.++.++. .+ +.++.+|..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~-----~~~i~gd~~ 50 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG-----VEVIYGDAT 50 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT-----SEEEES-TT
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc-----cccccccch
Confidence 45556777776654 34689999999998666532 21 567778743
No 343
>PRK09242 tropinone reductase; Provisional
Probab=28.62 E-value=3.1e+02 Score=26.34 Aligned_cols=59 Identities=15% Similarity=0.031 Sum_probs=41.7
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|+++ .|+..++..+ .+++|++++.+++.++....++.... -..++.++..|..
T Consensus 10 k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~ 70 (257)
T PRK09242 10 QTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF-PEREVHGLAADVS 70 (257)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCCeEEEEECCCC
Confidence 4678888765 4787777665 37899999999888877766665431 1346788888754
No 344
>PRK08862 short chain dehydrogenase; Provisional
Probab=28.59 E-value=2.8e+02 Score=26.74 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=40.3
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|=.|+++| |+..++.++ .+++|+.++.+++.++-+.+.++..+ ..+..+..|.
T Consensus 6 k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~D~ 63 (227)
T PRK08862 6 SIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT---DNVYSFQLKD 63 (227)
T ss_pred eEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CCeEEEEccC
Confidence 47888888886 677777665 57899999999998877766665542 3455555654
No 345
>PRK05866 short chain dehydrogenase; Provisional
Probab=28.47 E-value=2.8e+02 Score=27.83 Aligned_cols=57 Identities=12% Similarity=0.015 Sum_probs=40.4
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|.++ .|+..++..+ .+++|++++.+++.++...+.+... ..++.++..|..
T Consensus 41 k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~---~~~~~~~~~Dl~ 99 (293)
T PRK05866 41 KRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA---GGDAMAVPCDLS 99 (293)
T ss_pred CEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 4688788765 4788877654 4789999999998877666655433 235777777754
No 346
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.33 E-value=3.2e+02 Score=25.74 Aligned_cols=57 Identities=12% Similarity=-0.025 Sum_probs=40.1
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|++ |.|+..++..+ .+++++.+|.++..++.+...++.. ..++.++..|..
T Consensus 6 ~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 64 (253)
T PRK08217 6 KVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL---GTEVRGYAANVT 64 (253)
T ss_pred CEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEcCCC
Confidence 467877764 56888887655 3689999999988777666655543 246777777753
No 347
>PRK07035 short chain dehydrogenase; Provisional
Probab=28.06 E-value=3.2e+02 Score=26.06 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=39.2
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|+++| |+..++..+ .+++|++++.+++.++...+.+... ..++.++..|..
T Consensus 9 k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 67 (252)
T PRK07035 9 KIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA---GGKAEALACHIG 67 (252)
T ss_pred CEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEcCCC
Confidence 46777787755 788877665 4789999999988777665555433 234667777753
No 348
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=27.82 E-value=3e+02 Score=26.44 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=38.6
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|. +|.|+..++..+ .+++++.+|.++..++.....+.... -..++.++..|..
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 63 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY-GEGMAYGFGADAT 63 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc-CCceeEEEEccCC
Confidence 35788885 456888777655 47899999999877765544443210 1135778888754
No 349
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=27.77 E-value=1.9e+02 Score=29.08 Aligned_cols=60 Identities=12% Similarity=0.033 Sum_probs=37.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..++|=.| |+|.|+..|+.++ .+++|+++..++.....+.......+ ...+++++..|..
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 66 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG-AKERLKLFKADLL 66 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC-CCCceEEEeCCCC
Confidence 35788877 5688998888765 36888888777654433222111111 2346888888764
No 350
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=27.63 E-value=1.1e+02 Score=32.79 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=32.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHH
Q 010968 117 VKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~ 157 (496)
.++.=+|+|.=.++.+.+++..+ -+++|+|++++-+++|++
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 47888899865566667777666 489999999999999975
No 351
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=27.53 E-value=4.4e+02 Score=29.58 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=37.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH-HHHHCCCCCCcEEEEEccC
Q 010968 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK-NVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~-N~~~N~~L~~rI~~v~~d~ 176 (496)
.+++-+|||..-|+.-+..- .--.++-+|+|+.+++.... |+..+ ..++++..|.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~----~~~~~~~~d~ 105 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKER----PEMQMVEMDM 105 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCC----cceEEEEecc
Confidence 48999999999876555322 22479999999999988754 54333 2356665553
No 352
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.09 E-value=1e+02 Score=30.15 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=35.9
Q ss_pred CCeEEEEcCch-hHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGS-G~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
...+|=.|.++ +.|+..++.++ .+++|+.++.+++..+.+++-.+.. . .+.++..|.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~-~~~~~~~D~ 69 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---D-APIFLPLDV 69 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---c-cceEEecCc
Confidence 35788888776 36888887765 4689999999876554444333322 1 234556664
No 353
>PRK07890 short chain dehydrogenase; Provisional
Probab=26.94 E-value=3.2e+02 Score=26.08 Aligned_cols=57 Identities=14% Similarity=-0.008 Sum_probs=39.8
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|.+ |.|+..++..+ .+++|+.++.++..++.+..-+... ..++.++..|..
T Consensus 6 k~vlItGa~-~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 64 (258)
T PRK07890 6 KVVVVSGVG-PGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL---GRRALAVPTDIT 64 (258)
T ss_pred CEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh---CCceEEEecCCC
Confidence 467777765 45888877765 4789999999998776665555433 246778888754
No 354
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=26.88 E-value=3.6e+02 Score=25.52 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=40.6
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|++ |.|+..++.++ .+++|++++.+.+....+...+... ..++.++..|..
T Consensus 4 ~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~d~~ 62 (250)
T TIGR03206 4 KTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK---GGNAQAFACDIT 62 (250)
T ss_pred CEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc---CCcEEEEEcCCC
Confidence 467777754 55888887765 3689999999998877666666543 246888888754
No 355
>PLN02780 ketoreductase/ oxidoreductase
Probab=26.88 E-value=2.3e+02 Score=29.03 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=40.6
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..+|=.|+++| |+..++.++ .+++|+.++.+++.++...+.++... -..++..+..|.
T Consensus 54 ~~~lITGAs~G-IG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~-~~~~~~~~~~Dl 113 (320)
T PLN02780 54 SWALVTGPTDG-IGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY-SKTQIKTVVVDF 113 (320)
T ss_pred CEEEEeCCCcH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC-CCcEEEEEEEEC
Confidence 47888887655 888887765 47899999999999887776665431 123466666664
No 356
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=26.51 E-value=2.6e+02 Score=26.62 Aligned_cols=58 Identities=14% Similarity=0.010 Sum_probs=39.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
..++|=.|. +|.|+..++..+ .+++|+++|.+++.++.....++..+ ..++.++..|.
T Consensus 12 ~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~d~ 71 (247)
T PRK08945 12 DRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG--GPQPAIIPLDL 71 (247)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEecc
Confidence 347888884 566888777655 46899999999887766555554432 23566666664
No 357
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=26.37 E-value=3.3e+02 Score=26.51 Aligned_cols=57 Identities=16% Similarity=0.031 Sum_probs=39.1
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|.++ .|+..++.++ .+++|+.++.+++.++...+.++.. ..++.++..|..
T Consensus 11 k~vlVtGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~ 69 (278)
T PRK08277 11 KVAVITGGGG-VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA---GGEALAVKADVL 69 (278)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECCCC
Confidence 4667677654 4777777655 4789999999988776655555433 246778888754
No 358
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=26.37 E-value=1.3e+02 Score=28.72 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=30.5
Q ss_pred hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (496)
Q Consensus 93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs 148 (496)
+.+.|+.+.... -..-|||+|=|.|--|--|-..+|+-+|+..|--
T Consensus 16 ~~L~~a~~~v~~----------~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 16 DCLNWAAAQVAG----------LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHTTT------------S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHHhcC----------CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 456777777653 2457999999999999888888899899988863
No 359
>PRK06139 short chain dehydrogenase; Provisional
Probab=26.27 E-value=2.9e+02 Score=28.61 Aligned_cols=57 Identities=12% Similarity=0.048 Sum_probs=41.7
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|.++ .|+..++..+ .+++|+.++.+++.++...+.++..+ .++.++..|..
T Consensus 8 k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g---~~~~~~~~Dv~ 66 (330)
T PRK06139 8 AVVVITGASS-GIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG---AEVLVVPTDVT 66 (330)
T ss_pred CEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCC
Confidence 4677777755 4787777655 47899999999999887777776543 45777777754
No 360
>PRK07478 short chain dehydrogenase; Provisional
Probab=26.24 E-value=3.5e+02 Score=25.91 Aligned_cols=57 Identities=11% Similarity=-0.034 Sum_probs=40.4
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|.+. .|+..++..+ .+++|++++.+++.++.+...++..+ .++.++..|..
T Consensus 7 k~~lItGas~-giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 65 (254)
T PRK07478 7 KVAIITGASS-GIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG---GEAVALAGDVR 65 (254)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCC
Confidence 3677667664 4788877765 37899999999988877766665442 45777777754
No 361
>PRK05650 short chain dehydrogenase; Provisional
Probab=26.08 E-value=3e+02 Score=26.77 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=38.9
Q ss_pred eEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
++|=.|+. |.|+..++..+ .+++|+.++.+++.++.+...++.. ..++.++..|..
T Consensus 2 ~vlVtGas-ggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 59 (270)
T PRK05650 2 RVMITGAA-SGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA---GGDGFYQRCDVR 59 (270)
T ss_pred EEEEecCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEccCC
Confidence 46666654 45888877665 3789999999988877766665543 245777777754
No 362
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=25.85 E-value=1.7e+02 Score=28.23 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=34.8
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|+.+ .|+..++.++ .+++|+++|.+.. +-+.+.+... ..++..+..|..
T Consensus 11 k~~lItG~~~-gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~---~~~~~~~~~Dl~ 67 (253)
T PRK08993 11 KVAVVTGCDT-GLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL---GRRFLSLTADLR 67 (253)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc---CCeEEEEECCCC
Confidence 4788888754 5888888766 4789999987643 2222233322 245777777753
No 363
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=25.64 E-value=1.5e+02 Score=33.38 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=32.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~ 157 (496)
+.+|+=+|+|.=.+..+..++..+++|+++|++++.++.|++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 568999999875554444455667899999999999998865
No 364
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=25.22 E-value=2.2e+02 Score=29.49 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=45.2
Q ss_pred HHHHHHHHhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHH--hcC
Q 010968 62 RELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS--LLG 139 (496)
Q Consensus 62 r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~--~~~ 139 (496)
.++.+.|. +..+..+.+|++.-.|- +..-|.....+++... +... ..-..-++.+|||.-..++..+.+ .|+
T Consensus 138 ~~~~~~l~-~~~~~~~~~p~~~~n~~--~~~g~~~~~~EI~~q~--~~~~-~~~d~vv~~vGtGGt~aGi~~~lk~~~~~ 211 (329)
T PRK14045 138 EEVAEELK-GEGRKPYIIPPGGASPV--GTLGYVRAVGEIATQV--KKLG-VRFDSIVVAVGSGGTLAGLSLGLAILNAE 211 (329)
T ss_pred HHHHHHHH-hcCCCEEEECCCCCchh--HHHHHHHHHHHHHHHH--HhcC-CCCCEEEEeCCcHHHHHHHHHHHHHhCCC
Confidence 34444433 33445567788765553 4455544444554431 0000 011236777888876666665543 477
Q ss_pred CeeEEecCcH
Q 010968 140 WSFVGSDMTD 149 (496)
Q Consensus 140 ~~v~avDIs~ 149 (496)
.+|+|+|...
T Consensus 212 ~kVigv~~~~ 221 (329)
T PRK14045 212 WRVVGIAVGS 221 (329)
T ss_pred CeEEEEEecC
Confidence 9999999965
No 365
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.00 E-value=4.2e+02 Score=24.89 Aligned_cols=56 Identities=16% Similarity=-0.028 Sum_probs=39.5
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|++ |.|+..++..+ .+++|++++.+++.++.+.+.+... .++.++..|..
T Consensus 6 ~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~ 63 (238)
T PRK05786 6 KKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVS 63 (238)
T ss_pred cEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCC
Confidence 478888886 45887777665 4789999999988776554444332 24777777754
No 366
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=23.97 E-value=1e+03 Score=26.52 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=40.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcE
Q 010968 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELI 169 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI 169 (496)
...+|||+|+-.|.=-..+|+-+.+ -.|+|-|.+..-++.-+.|+.+.+ +.+.|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-v~nti 295 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-VTNTI 295 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-CCceE
Confidence 3469999999887544444444444 479999999999999999999985 55433
No 367
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=23.94 E-value=49 Score=35.79 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=16.1
Q ss_pred CCCeEEEEcCchhHHHHHHHH
Q 010968 115 DKVKGFDIGTGANCIYPLLGA 135 (496)
Q Consensus 115 ~~~~vLDIGTGSG~I~ilLa~ 135 (496)
+...|+|+|||+|...+.+..
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred cceeEEEecCCCCccHHHHHH
Confidence 357899999999977655543
No 368
>PRK05875 short chain dehydrogenase; Provisional
Probab=23.67 E-value=4.1e+02 Score=25.78 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=39.4
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|.+ |.|+..++..+ .+++|++++.+++.++-....+.... -..++.++..|..
T Consensus 8 k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~ 68 (276)
T PRK05875 8 RTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK-GAGAVRYEPADVT 68 (276)
T ss_pred CEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc-CCCceEEEEcCCC
Confidence 578888865 45888887765 37899999998876655444443321 1246778877754
No 369
>PRK08703 short chain dehydrogenase; Provisional
Probab=23.56 E-value=2.8e+02 Score=26.29 Aligned_cols=57 Identities=9% Similarity=-0.059 Sum_probs=38.2
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~ 176 (496)
.++|=.|+ +|.|+..++..+ .+++|++++.+++.++.....+...+ ...+.++..|.
T Consensus 7 k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~ 65 (239)
T PRK08703 7 KTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG--HPEPFAIRFDL 65 (239)
T ss_pred CEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC--CCCcceEEeee
Confidence 47888885 456888877655 47899999999987776655554432 12345555553
No 370
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=23.56 E-value=4e+02 Score=25.50 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=39.7
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|.+ |.|+..++.++ .+++++.++.+++.++.....++.. ..++.++..|..
T Consensus 10 k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~ 68 (254)
T PRK08085 10 KNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE---GIKAHAAPFNVT 68 (254)
T ss_pred CEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc---CCeEEEEecCCC
Confidence 467777855 45888887765 3689999999988777665555543 235777777754
No 371
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=23.37 E-value=1.2e+02 Score=36.03 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHH----HhhcCCeEEEEEeCCcCc--HHHHHHH-HHHcCCeeEEE
Q 010968 280 RAFITRIIEDSV----ALKQTFRWYTSMVGRKSN--LKFLISK-LRKVGVTIVKT 327 (496)
Q Consensus 280 l~FI~riI~eS~----~ll~~~gwftsmvGk~s~--l~~L~~~-L~~~g~~~vk~ 327 (496)
..|+.+.+.++. .+++..|..+.++..++. -..+++. +++.|+...++
T Consensus 560 ~~~fe~l~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~iTr~ 614 (875)
T COG1743 560 VEEFENLFREAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQITRA 614 (875)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCceeecc
Confidence 567777666554 478888888888874443 3345555 67777765444
No 372
>PRK07109 short chain dehydrogenase; Provisional
Probab=23.24 E-value=3.9e+02 Score=27.46 Aligned_cols=57 Identities=12% Similarity=-0.042 Sum_probs=41.6
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|.++ .|+..++..+ .+++|+.++.+++.++...+.++..+ .++.++..|..
T Consensus 9 k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g---~~~~~v~~Dv~ 67 (334)
T PRK07109 9 QVVVITGASA-GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG---GEALAVVADVA 67 (334)
T ss_pred CEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEecCC
Confidence 4677778654 4787777655 47899999999998887777766542 46778888754
No 373
>PRK08643 acetoin reductase; Validated
Probab=22.54 E-value=2.6e+02 Score=26.82 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=38.9
Q ss_pred eEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.+|=.|.. |.|+..++..+ .+++|++++.+++.++.+...+...+ .++.++..|..
T Consensus 4 ~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 61 (256)
T PRK08643 4 VALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG---GKAIAVKADVS 61 (256)
T ss_pred EEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCC
Confidence 45656644 55888777665 47899999999888777666665432 45777777754
No 374
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=22.37 E-value=3.3e+02 Score=25.58 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=35.2
Q ss_pred eEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
++|=.|+ +|.|+..++..+ .++++++++.++. +.+++-.........++.++..|..
T Consensus 4 ~vlItG~-s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~ 62 (245)
T PRK12824 4 IALVTGA-KRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVT 62 (245)
T ss_pred EEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCC
Confidence 5677774 566888887765 3689999998854 2222222221112356888888754
No 375
>PLN02253 xanthoxin dehydrogenase
Probab=22.37 E-value=3.3e+02 Score=26.61 Aligned_cols=56 Identities=11% Similarity=-0.070 Sum_probs=38.0
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
.++|=.|.+ |.|+..++..+ .+++|+++|.+++..+.....+. ...++.++..|..
T Consensus 19 k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~ 76 (280)
T PLN02253 19 KVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG----GEPNVCFFHCDVT 76 (280)
T ss_pred CEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc----CCCceEEEEeecC
Confidence 468888854 56888887765 47899999998876654433332 1246788888864
No 376
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=21.54 E-value=45 Score=32.06 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=7.8
Q ss_pred EEEECCCCc
Q 010968 244 FCICNPPFF 252 (496)
Q Consensus 244 fImcNPPY~ 252 (496)
-|.|||||-
T Consensus 64 ~vf~NPPYS 72 (166)
T TIGR01712 64 AVWLNPPYS 72 (166)
T ss_pred eEEecCCCC
Confidence 589999993
No 377
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.21 E-value=2.5e+02 Score=28.26 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=28.7
Q ss_pred eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH
Q 010968 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~ 160 (496)
+|.=||+|+=.-++.......+.+|+.+|++++.++.++.+++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4556677643222222222357899999999999999987764
No 378
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=21.12 E-value=5.1e+02 Score=24.82 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=40.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..++|=.|+++ .|+..++..+ .+++++.++.+++.++.+...++.. ..++.++..|..
T Consensus 11 ~k~vlVtG~s~-gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 70 (255)
T PRK06113 11 GKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL---GGQAFACRCDIT 70 (255)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 45799999654 5888877665 4689999999888776655444432 235777777754
No 379
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=20.38 E-value=1.1e+02 Score=29.70 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=37.5
Q ss_pred hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (496)
Q Consensus 93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~ 159 (496)
.++.||.+++... ...+++|.=+|+|+++..+.. +..+++.-|+++......+.-+
T Consensus 7 ~l~~~I~~~ip~~---------~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 7 KLAKWIIELIPKN---------KHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GGHHHHHHHS-S----------S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---------CCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHHHHH
Confidence 4567888777531 346899999999998655533 6778999999999888877433
No 380
>PRK06720 hypothetical protein; Provisional
Probab=20.22 E-value=5.9e+02 Score=23.77 Aligned_cols=57 Identities=12% Similarity=0.003 Sum_probs=37.5
Q ss_pred CeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 117 ~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+|=.|.|+| |+..++..+ .+++|+.+|.+++.++-+.+.+...+ .++.++..|..
T Consensus 17 k~~lVTGa~~G-IG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~ 75 (169)
T PRK06720 17 KVAIVTGGGIG-IGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG---GEALFVSYDME 75 (169)
T ss_pred CEEEEecCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCC
Confidence 46777777654 666666554 46899999999887766655554322 34666667643
No 381
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=20.14 E-value=4.8e+02 Score=24.63 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=38.1
Q ss_pred eEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 118 ~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
++|=.| |+|.|+..++..+ .+++|++++.+++..+....-.... ..++.++..|..
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 60 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA---GGSVIYLVADVT 60 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEECCCC
Confidence 355555 4567888888765 4789999999987766555444433 246888888754
No 382
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=20.13 E-value=3.4e+02 Score=26.95 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=36.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhc--CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968 116 KVKGFDIGTGANCIYPLLGASLL--GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (496)
Q Consensus 116 ~~~vLDIGTGSG~I~ilLa~~~~--~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~ 177 (496)
..+||=.|. +|.|+..|+.++. +++|++++.++............. ....+++++.+|..
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~ 65 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALD-GAKERLHLFKANLL 65 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhcc-CCCCceEEEecccc
Confidence 345665553 6899999887763 678988887764332222211111 12346888888865
Done!