Query 010971
Match_columns 496
No_of_seqs 386 out of 2654
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1122 tRNA and rRNA cytosine 100.0 5E-90 1.1E-94 704.3 26.7 375 3-385 67-443 (460)
2 COG0144 Sun tRNA and rRNA cyto 100.0 1E-69 2.2E-74 563.1 35.5 302 70-383 50-354 (355)
3 PRK11933 yebU rRNA (cytosine-C 100.0 2.9E-67 6.3E-72 560.1 32.1 300 72-385 2-309 (470)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 3.9E-64 8.5E-69 506.9 18.0 281 94-381 1-283 (283)
5 PRK14903 16S rRNA methyltransf 100.0 2E-61 4.3E-66 513.0 35.9 302 66-384 126-431 (431)
6 PRK14901 16S rRNA methyltransf 100.0 3.2E-61 7E-66 512.2 32.5 291 66-384 141-434 (434)
7 TIGR00563 rsmB ribosomal RNA s 100.0 9.1E-59 2E-63 492.4 35.9 297 65-383 128-426 (426)
8 PRK10901 16S rRNA methyltransf 100.0 1E-56 2.2E-61 476.9 36.4 293 65-383 134-427 (427)
9 PRK14902 16S rRNA methyltransf 100.0 9.5E-57 2.1E-61 479.2 35.8 304 65-384 140-444 (444)
10 PRK14904 16S rRNA methyltransf 100.0 1.6E-55 3.5E-60 469.9 35.3 301 65-384 142-444 (445)
11 TIGR00446 nop2p NOL1/NOP2/sun 100.0 1.1E-55 2.4E-60 441.3 27.8 263 106-382 1-264 (264)
12 KOG2198 tRNA cytosine-5-methyl 100.0 7.4E-42 1.6E-46 347.4 17.3 255 82-340 32-326 (375)
13 KOG2360 Proliferation-associat 100.0 3.9E-36 8.3E-41 305.7 18.0 284 87-382 115-412 (413)
14 PRK15128 23S rRNA m(5)C1962 me 99.7 1.2E-15 2.6E-20 161.0 15.6 166 150-337 195-368 (396)
15 COG1092 Predicted SAM-dependen 99.6 1.9E-15 4.2E-20 158.4 10.9 157 152-330 194-356 (393)
16 PRK11783 rlmL 23S rRNA m(2)G24 99.5 1.6E-13 3.4E-18 154.8 19.0 163 151-338 514-678 (702)
17 COG2242 CobL Precorrin-6B meth 99.5 2E-13 4.4E-18 129.0 15.4 138 167-340 23-161 (187)
18 PF13659 Methyltransf_26: Meth 99.5 8.1E-14 1.7E-18 121.0 8.3 116 179-314 1-117 (117)
19 TIGR03704 PrmC_rel_meth putati 99.5 1.1E-12 2.4E-17 130.6 16.0 142 178-332 86-232 (251)
20 PRK14967 putative methyltransf 99.5 1.9E-12 4E-17 126.3 16.7 159 158-334 14-178 (223)
21 PF10672 Methyltrans_SAM: S-ad 99.5 5.8E-14 1.3E-18 142.0 6.2 146 150-320 98-246 (286)
22 PRK09328 N5-glutamine S-adenos 99.4 4.3E-12 9.4E-17 126.6 18.2 234 76-334 9-256 (275)
23 TIGR01177 conserved hypothetic 99.4 1.4E-12 3E-17 134.6 15.1 121 173-315 177-297 (329)
24 TIGR00537 hemK_rel_arch HemK-r 99.4 2.9E-12 6.3E-17 120.6 15.7 154 167-337 8-162 (179)
25 PRK00377 cbiT cobalt-precorrin 99.4 5.9E-12 1.3E-16 120.6 17.7 138 168-338 30-170 (198)
26 COG4123 Predicted O-methyltran 99.4 1.4E-12 3.1E-17 128.9 13.0 153 167-333 33-187 (248)
27 TIGR03533 L3_gln_methyl protei 99.4 9.9E-12 2.1E-16 126.0 19.0 141 176-331 119-265 (284)
28 PTZ00146 fibrillarin; Provisio 99.4 7.9E-12 1.7E-16 126.5 17.7 140 167-337 115-268 (293)
29 PRK03522 rumB 23S rRNA methylu 99.4 3.5E-12 7.6E-17 130.9 14.8 86 174-263 169-254 (315)
30 TIGR00080 pimt protein-L-isoas 99.4 3.3E-12 7.2E-17 123.9 13.7 90 169-260 68-157 (215)
31 PRK04266 fibrillarin; Provisio 99.4 1.3E-11 2.8E-16 121.3 17.4 106 174-311 68-175 (226)
32 PF12847 Methyltransf_18: Meth 99.4 2.6E-12 5.6E-17 110.5 10.8 110 178-313 1-112 (112)
33 PF05175 MTS: Methyltransferas 99.4 2.2E-12 4.7E-17 120.9 10.2 124 164-312 17-140 (170)
34 COG2226 UbiE Methylase involve 99.4 5.1E-12 1.1E-16 124.7 12.5 122 169-321 42-163 (238)
35 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.5E-11 3.3E-16 131.9 16.8 87 173-262 292-380 (443)
36 TIGR00479 rumA 23S rRNA (uraci 99.3 1.1E-11 2.4E-16 132.4 14.6 88 172-262 286-375 (431)
37 TIGR03534 RF_mod_PrmC protein- 99.3 1.6E-11 3.6E-16 120.4 14.4 144 178-337 87-238 (251)
38 PF01209 Ubie_methyltran: ubiE 99.3 2.9E-12 6.2E-17 126.4 8.0 139 169-338 38-176 (233)
39 TIGR02469 CbiT precorrin-6Y C5 99.3 7.7E-11 1.7E-15 102.4 14.7 111 171-312 12-122 (124)
40 PF05958 tRNA_U5-meth_tr: tRNA 99.3 1.4E-11 3.1E-16 128.4 11.1 89 171-263 190-292 (352)
41 PRK13944 protein-L-isoaspartat 99.3 3.4E-11 7.4E-16 116.2 12.9 86 171-258 65-151 (205)
42 PRK13942 protein-L-isoaspartat 99.3 4.6E-11 9.9E-16 116.0 13.8 88 168-257 66-153 (212)
43 PRK08287 cobalt-precorrin-6Y C 99.3 6.5E-11 1.4E-15 112.1 14.3 132 167-335 20-151 (187)
44 PRK07402 precorrin-6B methylas 99.3 2.9E-11 6.2E-16 115.5 11.7 147 158-339 20-169 (196)
45 PRK00121 trmB tRNA (guanine-N( 99.3 3.2E-11 7E-16 116.2 11.4 127 178-329 40-167 (202)
46 PRK14968 putative methyltransf 99.3 1.6E-10 3.4E-15 108.2 15.7 165 158-337 4-170 (188)
47 PRK11805 N5-glutamine S-adenos 99.2 9.5E-11 2.1E-15 120.1 14.6 121 179-311 134-262 (307)
48 PF13847 Methyltransf_31: Meth 99.2 6.8E-11 1.5E-15 108.1 12.1 111 177-314 2-112 (152)
49 COG2519 GCD14 tRNA(1-methylade 99.2 9.6E-11 2.1E-15 115.5 13.4 126 155-314 71-198 (256)
50 COG2263 Predicted RNA methylas 99.2 3.1E-10 6.7E-15 107.5 15.2 124 173-335 40-163 (198)
51 TIGR02752 MenG_heptapren 2-hep 99.2 2.1E-10 4.6E-15 111.6 14.6 115 170-312 37-151 (231)
52 TIGR00536 hemK_fam HemK family 99.2 2.4E-10 5.3E-15 115.6 15.5 128 179-314 115-246 (284)
53 COG2265 TrmA SAM-dependent met 99.2 8E-11 1.7E-15 125.6 12.3 113 171-316 286-399 (432)
54 TIGR00138 gidB 16S rRNA methyl 99.2 2.9E-10 6.3E-15 107.9 14.8 123 178-338 42-167 (181)
55 PF08704 GCD14: tRNA methyltra 99.2 7.9E-11 1.7E-15 117.0 11.2 91 167-258 29-122 (247)
56 PF01135 PCMT: Protein-L-isoas 99.2 8.2E-11 1.8E-15 114.3 9.9 87 171-259 65-151 (209)
57 TIGR00438 rrmJ cell division p 99.2 3.1E-10 6.8E-15 107.6 13.3 112 175-312 29-146 (188)
58 PRK14966 unknown domain/N5-glu 99.2 4.4E-10 9.6E-15 118.9 15.5 146 176-336 249-401 (423)
59 PRK00312 pcm protein-L-isoaspa 99.2 3.4E-10 7.3E-15 109.4 13.5 86 169-259 69-154 (212)
60 PRK00107 gidB 16S rRNA methylt 99.2 3.1E-10 6.7E-15 108.5 12.5 121 178-336 45-165 (187)
61 KOG1540 Ubiquinone biosynthesi 99.2 2.2E-10 4.7E-15 112.7 11.1 138 170-338 92-237 (296)
62 COG2518 Pcm Protein-L-isoaspar 99.1 5.3E-10 1.2E-14 107.9 13.6 97 157-258 51-147 (209)
63 PRK11873 arsM arsenite S-adeno 99.1 4.6E-10 9.9E-15 112.4 13.7 115 173-315 72-186 (272)
64 PLN02233 ubiquinone biosynthes 99.1 3.2E-10 7E-15 113.5 12.4 117 171-315 66-185 (261)
65 COG2890 HemK Methylase of poly 99.1 1.3E-09 2.8E-14 110.5 15.7 158 158-332 88-254 (280)
66 TIGR02085 meth_trns_rumB 23S r 99.1 3.9E-10 8.5E-15 118.6 12.3 84 175-262 230-313 (374)
67 PLN02781 Probable caffeoyl-CoA 99.1 5.4E-10 1.2E-14 110.3 12.2 118 169-315 59-181 (234)
68 PRK09489 rsmC 16S ribosomal RN 99.1 8.7E-10 1.9E-14 114.7 14.2 129 164-319 182-310 (342)
69 COG1041 Predicted DNA modifica 99.1 7.2E-10 1.5E-14 114.0 12.6 121 171-313 190-311 (347)
70 PRK13943 protein-L-isoaspartat 99.1 8.9E-10 1.9E-14 113.6 13.0 84 172-257 74-157 (322)
71 PRK14121 tRNA (guanine-N(7)-)- 99.1 9.1E-10 2E-14 115.7 12.9 123 173-316 117-239 (390)
72 PRK04338 N(2),N(2)-dimethylgua 99.1 7.4E-10 1.6E-14 116.8 12.2 112 169-314 47-159 (382)
73 PRK11188 rrmJ 23S rRNA methylt 99.1 1.3E-09 2.8E-14 105.8 12.8 110 176-312 49-165 (209)
74 PF02475 Met_10: Met-10+ like- 99.1 3.6E-10 7.8E-15 109.1 8.6 101 176-310 99-200 (200)
75 PF01170 UPF0020: Putative RNA 99.1 2.4E-09 5.3E-14 101.5 13.8 122 171-314 21-151 (179)
76 PLN02476 O-methyltransferase 99.1 8.4E-10 1.8E-14 111.4 11.1 121 167-316 107-232 (278)
77 TIGR00091 tRNA (guanine-N(7)-) 99.1 6.1E-10 1.3E-14 106.5 9.5 117 177-312 15-132 (194)
78 PRK15001 SAM-dependent 23S rib 99.0 2.6E-09 5.6E-14 112.3 14.4 124 164-312 214-340 (378)
79 PRK01544 bifunctional N5-gluta 99.0 3.5E-09 7.6E-14 115.5 15.9 141 178-334 138-287 (506)
80 COG2813 RsmC 16S RNA G1207 met 99.0 1.7E-08 3.7E-13 102.2 19.6 129 163-317 143-271 (300)
81 PRK10909 rsmD 16S rRNA m(2)G96 99.0 1.9E-09 4.2E-14 104.0 12.2 80 177-259 52-131 (199)
82 PLN02244 tocopherol O-methyltr 99.0 2.1E-09 4.6E-14 111.7 13.0 108 177-314 117-225 (340)
83 PRK05031 tRNA (uracil-5-)-meth 99.0 1E-09 2.2E-14 115.0 10.7 81 179-262 207-301 (362)
84 COG2264 PrmA Ribosomal protein 99.0 5.2E-09 1.1E-13 106.3 14.1 138 165-339 147-287 (300)
85 TIGR02143 trmA_only tRNA (urac 99.0 2.1E-09 4.5E-14 112.3 11.5 82 179-263 198-293 (353)
86 PRK08317 hypothetical protein; 99.0 1E-08 2.2E-13 98.8 14.7 115 171-314 12-126 (241)
87 PRK11207 tellurite resistance 99.0 4.7E-09 1E-13 100.7 12.2 114 169-312 21-134 (197)
88 TIGR00406 prmA ribosomal prote 99.0 8.9E-09 1.9E-13 104.6 14.7 134 166-338 145-281 (288)
89 COG2520 Predicted methyltransf 99.0 3.5E-09 7.5E-14 109.5 11.7 122 176-331 186-311 (341)
90 PRK11036 putative S-adenosyl-L 99.0 8E-09 1.7E-13 102.7 13.9 108 177-314 43-151 (255)
91 PRK00517 prmA ribosomal protei 99.0 1.9E-08 4.2E-13 100.0 16.0 119 176-338 117-236 (250)
92 PF03602 Cons_hypoth95: Conser 98.9 2.2E-09 4.7E-14 102.3 8.3 82 177-260 41-125 (183)
93 COG4122 Predicted O-methyltran 98.9 5.5E-09 1.2E-13 102.0 11.1 121 167-316 48-170 (219)
94 PRK15451 tRNA cmo(5)U34 methyl 98.9 1.6E-08 3.4E-13 100.4 13.9 110 176-314 54-166 (247)
95 cd02440 AdoMet_MTases S-adenos 98.9 1.5E-08 3.3E-13 82.6 11.1 103 181-311 1-103 (107)
96 TIGR00308 TRM1 tRNA(guanine-26 98.9 4.6E-09 9.9E-14 110.4 9.6 103 180-314 46-148 (374)
97 COG0742 N6-adenine-specific me 98.9 9.7E-09 2.1E-13 97.7 10.7 82 177-260 42-125 (187)
98 TIGR00095 RNA methyltransferas 98.9 1E-08 2.2E-13 98.2 10.4 81 178-260 49-132 (189)
99 TIGR00477 tehB tellurite resis 98.9 2.5E-08 5.4E-13 95.6 13.1 126 155-312 8-133 (195)
100 COG2230 Cfa Cyclopropane fatty 98.9 2.8E-08 6E-13 100.3 13.8 117 169-317 63-181 (283)
101 PLN02396 hexaprenyldihydroxybe 98.9 3.5E-08 7.5E-13 101.9 14.8 108 175-313 128-236 (322)
102 PF08241 Methyltransf_11: Meth 98.9 3.8E-09 8.3E-14 87.0 6.2 95 183-310 1-95 (95)
103 PF02353 CMAS: Mycolic acid cy 98.9 1.2E-08 2.7E-13 103.0 11.1 117 169-316 53-170 (273)
104 PRK00216 ubiE ubiquinone/menaq 98.9 5E-08 1.1E-12 94.5 14.5 117 171-315 44-161 (239)
105 PRK01683 trans-aconitate 2-met 98.8 2E-08 4.3E-13 99.6 11.7 107 171-312 24-130 (258)
106 PRK10258 biotin biosynthesis p 98.8 1.2E-08 2.5E-13 101.0 9.9 117 162-314 26-142 (251)
107 PHA03412 putative methyltransf 98.8 2.5E-08 5.3E-13 98.4 11.9 138 178-337 49-199 (241)
108 PF06325 PrmA: Ribosomal prote 98.8 7.2E-09 1.6E-13 105.6 8.2 132 167-338 148-281 (295)
109 PLN03075 nicotianamine synthas 98.8 3.3E-08 7.2E-13 100.6 12.9 109 178-313 123-234 (296)
110 PRK14103 trans-aconitate 2-met 98.8 1.7E-08 3.7E-13 100.3 10.7 104 171-311 22-125 (255)
111 PHA03411 putative methyltransf 98.8 7.4E-08 1.6E-12 97.0 15.0 149 174-337 60-211 (279)
112 PTZ00098 phosphoethanolamine N 98.8 3E-08 6.5E-13 99.5 12.2 115 169-314 43-158 (263)
113 COG0293 FtsJ 23S rRNA methylas 98.8 2.3E-08 5E-13 96.4 10.8 126 176-330 43-174 (205)
114 PF09445 Methyltransf_15: RNA 98.8 1.4E-08 3.1E-13 94.9 8.9 84 180-266 1-86 (163)
115 PF01596 Methyltransf_3: O-met 98.8 3.6E-09 7.9E-14 102.5 5.1 109 178-315 45-158 (205)
116 KOG2904 Predicted methyltransf 98.8 1.1E-07 2.4E-12 94.7 14.7 146 178-330 148-301 (328)
117 PLN02336 phosphoethanolamine N 98.8 4.6E-08 1E-12 105.7 13.3 115 171-316 259-373 (475)
118 PLN02672 methionine S-methyltr 98.8 3.8E-08 8.2E-13 114.7 12.9 150 179-337 119-300 (1082)
119 PF01269 Fibrillarin: Fibrilla 98.8 1.2E-07 2.5E-12 92.4 13.8 141 166-337 55-209 (229)
120 PF13649 Methyltransf_25: Meth 98.8 3E-08 6.4E-13 84.4 8.4 99 182-306 1-101 (101)
121 smart00828 PKS_MT Methyltransf 98.8 2.3E-07 5.1E-12 89.8 15.6 129 180-338 1-142 (224)
122 PRK15068 tRNA mo(5)U34 methylt 98.8 1.9E-07 4.2E-12 96.4 15.9 113 172-315 116-229 (322)
123 PRK06922 hypothetical protein; 98.8 9E-08 2E-12 106.0 14.1 127 173-315 413-540 (677)
124 PRK12335 tellurite resistance 98.7 8.6E-08 1.9E-12 97.2 12.5 104 177-311 119-222 (287)
125 KOG2915 tRNA(1-methyladenosine 98.7 9.3E-08 2E-12 95.1 12.2 94 165-258 92-186 (314)
126 TIGR00452 methyltransferase, p 98.7 2.3E-07 5E-12 95.6 15.6 117 173-320 116-233 (314)
127 TIGR00740 methyltransferase, p 98.7 1.6E-07 3.5E-12 92.4 13.9 110 176-313 51-162 (239)
128 smart00650 rADc Ribosomal RNA 98.7 1.1E-07 2.4E-12 88.7 12.1 82 171-259 6-87 (169)
129 TIGR02716 C20_methyl_CrtF C-20 98.7 4.9E-07 1.1E-11 92.3 17.3 123 169-321 140-263 (306)
130 PF02384 N6_Mtase: N-6 DNA Met 98.7 2.6E-08 5.7E-13 101.6 7.6 163 165-334 33-208 (311)
131 TIGR01934 MenG_MenH_UbiE ubiqu 98.7 2E-07 4.4E-12 89.2 13.3 113 173-315 34-146 (223)
132 COG2227 UbiG 2-polyprenyl-3-me 98.7 3E-08 6.4E-13 97.4 7.5 106 177-314 58-163 (243)
133 PF03848 TehB: Tellurite resis 98.7 6.4E-08 1.4E-12 92.9 9.6 91 157-255 10-100 (192)
134 PRK00050 16S rRNA m(4)C1402 me 98.7 5.1E-08 1.1E-12 99.4 8.4 90 171-262 12-103 (296)
135 PRK05134 bifunctional 3-demeth 98.7 4.7E-07 1E-11 88.4 14.7 113 171-314 41-153 (233)
136 PLN02589 caffeoyl-CoA O-methyl 98.7 1.2E-07 2.7E-12 94.4 10.5 118 169-315 70-193 (247)
137 PRK04457 spermidine synthase; 98.7 2E-07 4.3E-12 93.7 11.9 114 177-314 65-179 (262)
138 PRK11705 cyclopropane fatty ac 98.6 2.2E-07 4.7E-12 98.3 12.5 112 170-315 159-270 (383)
139 PF01728 FtsJ: FtsJ-like methy 98.6 7.1E-08 1.5E-12 90.8 7.5 132 176-337 21-163 (181)
140 PLN02490 MPBQ/MSBQ methyltrans 98.6 4.7E-07 1E-11 94.1 13.4 104 177-312 112-215 (340)
141 PLN02336 phosphoethanolamine N 98.6 3.6E-07 7.8E-12 98.8 12.9 120 168-316 27-146 (475)
142 PF02390 Methyltransf_4: Putat 98.6 1.6E-07 3.6E-12 90.3 9.0 134 178-336 17-156 (195)
143 TIGR01983 UbiG ubiquinone bios 98.6 4.6E-07 1E-11 87.6 11.6 108 177-314 44-151 (224)
144 TIGR02021 BchM-ChlM magnesium 98.5 9.3E-07 2E-11 85.7 12.6 72 176-255 53-125 (219)
145 TIGR02072 BioC biotin biosynth 98.5 4.9E-07 1.1E-11 87.3 10.6 103 177-312 33-135 (240)
146 KOG2187 tRNA uracil-5-methyltr 98.5 2.5E-07 5.3E-12 99.0 9.1 114 173-318 378-495 (534)
147 PRK00811 spermidine synthase; 98.5 1.1E-06 2.4E-11 89.2 13.0 127 178-330 76-207 (283)
148 PRK11727 23S rRNA mA1618 methy 98.5 1.2E-06 2.7E-11 90.3 13.4 85 178-263 114-203 (321)
149 PRK01581 speE spermidine synth 98.5 1.8E-06 4E-11 90.1 13.3 127 172-324 145-278 (374)
150 PRK10742 putative methyltransf 98.5 1.5E-06 3.3E-11 86.2 12.1 91 167-261 75-176 (250)
151 PTZ00338 dimethyladenosine tra 98.5 4.9E-07 1.1E-11 92.3 8.9 97 160-263 18-115 (294)
152 COG0220 Predicted S-adenosylme 98.5 6.1E-07 1.3E-11 88.4 9.1 122 180-326 50-172 (227)
153 PRK11088 rrmA 23S rRNA methylt 98.4 1.5E-06 3.2E-11 87.4 11.7 72 177-255 84-157 (272)
154 smart00138 MeTrc Methyltransfe 98.4 1.8E-06 3.9E-11 86.8 12.1 112 177-314 98-244 (264)
155 PF05401 NodS: Nodulation prot 98.4 1.3E-06 2.8E-11 83.8 10.1 113 169-313 34-147 (201)
156 PRK14896 ksgA 16S ribosomal RN 98.4 7.7E-07 1.7E-11 89.0 8.6 93 160-261 11-103 (258)
157 TIGR00417 speE spermidine synt 98.4 2.8E-06 6.1E-11 85.5 12.6 124 179-328 73-200 (270)
158 PF08242 Methyltransf_12: Meth 98.4 4.3E-08 9.2E-13 82.8 -0.5 72 183-255 1-72 (99)
159 KOG1270 Methyltransferases [Co 98.4 1.4E-06 3E-11 86.6 10.0 103 176-313 87-196 (282)
160 KOG1099 SAM-dependent methyltr 98.4 8.2E-07 1.8E-11 86.4 8.2 122 180-330 43-178 (294)
161 TIGR03438 probable methyltrans 98.4 3.4E-06 7.3E-11 86.3 13.3 122 177-327 62-189 (301)
162 KOG1271 Methyltransferases [Ge 98.3 1.5E-06 3.2E-11 82.2 8.0 114 180-319 69-188 (227)
163 COG0116 Predicted N6-adenine-s 98.3 8.7E-06 1.9E-10 85.3 14.3 145 150-314 157-346 (381)
164 COG2521 Predicted archaeal met 98.3 4.2E-07 9.2E-12 88.8 4.3 142 171-337 127-274 (287)
165 COG1889 NOP1 Fibrillarin-like 98.3 1.1E-05 2.4E-10 77.5 13.7 140 167-338 59-212 (231)
166 PRK01544 bifunctional N5-gluta 98.3 6.6E-06 1.4E-10 90.1 13.5 118 177-313 346-463 (506)
167 TIGR03840 TMPT_Se_Te thiopurin 98.3 5.8E-06 1.3E-10 80.6 11.2 108 177-315 33-155 (213)
168 PRK03612 spermidine synthase; 98.3 4.9E-06 1.1E-10 91.4 11.9 117 177-316 296-419 (521)
169 PRK00274 ksgA 16S ribosomal RN 98.3 1.8E-06 3.9E-11 87.0 7.7 86 169-262 33-118 (272)
170 PLN02585 magnesium protoporphy 98.3 1.7E-05 3.8E-10 81.8 15.0 70 178-255 144-218 (315)
171 KOG1596 Fibrillarin and relate 98.3 3.6E-06 7.9E-11 82.5 9.2 133 167-330 139-282 (317)
172 KOG1663 O-methyltransferase [S 98.3 7.4E-06 1.6E-10 80.1 11.3 120 167-315 62-186 (237)
173 PLN02366 spermidine synthase 98.3 1.1E-05 2.4E-10 82.9 13.2 110 178-310 91-204 (308)
174 TIGR03587 Pse_Me-ase pseudamin 98.2 7.4E-06 1.6E-10 79.3 10.9 71 176-255 41-111 (204)
175 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.4E-05 3.1E-10 90.7 14.8 112 149-260 154-314 (702)
176 COG4106 Tam Trans-aconitate me 98.2 3.3E-06 7.2E-11 81.8 7.8 102 175-311 27-128 (257)
177 PF13489 Methyltransf_23: Meth 98.2 3.9E-06 8.4E-11 76.0 7.7 104 171-315 14-118 (161)
178 KOG4589 Cell division protein 98.2 1.4E-05 3E-10 75.9 11.4 132 177-337 68-208 (232)
179 PRK07580 Mg-protoporphyrin IX 98.2 1.4E-05 3E-10 77.5 11.1 71 177-255 62-133 (230)
180 PRK13255 thiopurine S-methyltr 98.2 2.5E-05 5.3E-10 76.6 12.7 85 164-255 21-122 (218)
181 PRK05785 hypothetical protein; 98.1 9.5E-06 2.1E-10 79.7 9.2 66 178-255 51-116 (226)
182 PRK06202 hypothetical protein; 98.1 8.5E-06 1.8E-10 79.8 8.0 78 173-255 55-135 (232)
183 KOG3420 Predicted RNA methylas 98.1 5.2E-06 1.1E-10 75.9 5.7 84 177-268 47-130 (185)
184 TIGR00755 ksgA dimethyladenosi 98.1 9.1E-06 2E-10 80.9 8.0 83 168-259 19-104 (253)
185 TIGR02987 met_A_Alw26 type II 98.1 3.3E-05 7.2E-10 84.8 12.6 87 178-264 31-127 (524)
186 TIGR00006 S-adenosyl-methyltra 98.1 1.3E-05 2.9E-10 82.1 8.8 90 171-262 13-105 (305)
187 COG4076 Predicted RNA methylas 98.0 8.2E-06 1.8E-10 77.5 6.3 100 179-309 33-132 (252)
188 KOG1661 Protein-L-isoaspartate 98.0 3.7E-05 8.1E-10 74.3 10.0 85 172-258 74-171 (237)
189 PF02527 GidB: rRNA small subu 98.0 2.4E-05 5.3E-10 74.7 8.5 86 167-257 38-123 (184)
190 PF12147 Methyltransf_20: Puta 98.0 0.00013 2.9E-09 73.8 14.0 129 178-331 135-266 (311)
191 KOG2899 Predicted methyltransf 98.0 3E-05 6.4E-10 76.4 8.7 108 178-310 58-207 (288)
192 PF07021 MetW: Methionine bios 97.9 6.4E-05 1.4E-09 72.0 10.3 71 176-255 11-81 (193)
193 PF08003 Methyltransf_9: Prote 97.9 9.4E-05 2E-09 75.5 12.0 117 173-320 110-227 (315)
194 KOG1098 Putative SAM-dependent 97.9 8E-06 1.7E-10 88.9 4.0 110 176-311 42-157 (780)
195 PLN02823 spermine synthase 97.8 0.00015 3.2E-09 75.6 11.6 78 179-258 104-185 (336)
196 PF02005 TRM: N2,N2-dimethylgu 97.8 3.6E-05 7.7E-10 81.4 6.7 105 178-314 49-155 (377)
197 COG0286 HsdM Type I restrictio 97.8 0.00011 2.5E-09 80.1 10.6 167 159-330 168-346 (489)
198 COG0357 GidB Predicted S-adeno 97.8 0.0001 2.2E-09 72.0 8.9 75 179-257 68-143 (215)
199 COG0030 KsgA Dimethyladenosine 97.8 0.00013 2.8E-09 73.2 9.5 90 168-263 20-109 (259)
200 KOG2730 Methylase [General fun 97.7 1.6E-05 3.5E-10 77.2 2.9 86 178-266 94-182 (263)
201 PF03291 Pox_MCEL: mRNA cappin 97.7 9.7E-05 2.1E-09 76.8 8.5 112 178-314 62-188 (331)
202 PF01861 DUF43: Protein of unk 97.7 0.00016 3.5E-09 71.5 9.4 130 178-338 44-176 (243)
203 PRK11760 putative 23S rRNA C24 97.7 0.00077 1.7E-08 70.1 14.6 169 79-259 73-280 (357)
204 KOG3191 Predicted N6-DNA-methy 97.7 0.00032 6.8E-09 66.6 10.6 139 179-332 44-185 (209)
205 PF13578 Methyltransf_24: Meth 97.7 1.6E-05 3.4E-10 68.2 1.9 75 183-258 1-78 (106)
206 KOG1541 Predicted protein carb 97.7 0.00024 5.2E-09 69.3 10.0 140 159-330 29-174 (270)
207 KOG2671 Putative RNA methylase 97.6 9.5E-05 2.1E-09 76.0 6.7 143 167-321 197-359 (421)
208 KOG1253 tRNA methyltransferase 97.6 5.3E-05 1.2E-09 81.1 5.0 107 177-314 108-217 (525)
209 TIGR00478 tly hemolysin TlyA f 97.6 0.00012 2.7E-09 72.2 7.0 44 177-222 74-118 (228)
210 TIGR02081 metW methionine bios 97.6 0.00043 9.3E-09 66.0 10.2 71 177-257 12-83 (194)
211 PF10294 Methyltransf_16: Puta 97.6 0.00023 4.9E-09 67.1 8.0 77 177-255 44-125 (173)
212 KOG4300 Predicted methyltransf 97.6 0.00038 8.2E-09 67.4 9.4 123 175-330 73-197 (252)
213 KOG1499 Protein arginine N-met 97.6 0.00042 9.1E-09 71.7 10.2 112 178-317 60-172 (346)
214 PF00891 Methyltransf_2: O-met 97.6 0.001 2.2E-08 65.5 12.5 116 171-323 93-210 (241)
215 PF01795 Methyltransf_5: MraW 97.5 5.5E-05 1.2E-09 77.6 3.1 89 171-261 13-105 (310)
216 PRK13256 thiopurine S-methyltr 97.5 0.0007 1.5E-08 66.8 10.7 114 175-315 40-166 (226)
217 COG4976 Predicted methyltransf 97.5 0.00027 5.7E-09 69.4 7.1 129 176-338 123-263 (287)
218 KOG2361 Predicted methyltransf 97.5 4.4E-05 9.6E-10 75.2 1.7 98 154-255 50-150 (264)
219 cd00315 Cyt_C5_DNA_methylase C 97.5 0.00019 4.2E-09 72.5 6.1 79 181-267 2-80 (275)
220 PF01564 Spermine_synth: Sperm 97.4 0.00055 1.2E-08 68.3 9.2 134 171-330 70-207 (246)
221 PF05185 PRMT5: PRMT5 arginine 97.4 0.0007 1.5E-08 73.2 9.4 121 179-326 187-313 (448)
222 COG3963 Phospholipid N-methylt 97.4 0.002 4.4E-08 60.5 11.1 112 174-314 44-158 (194)
223 COG0275 Predicted S-adenosylme 97.4 0.00052 1.1E-08 69.9 7.6 90 170-260 15-107 (314)
224 PF04816 DUF633: Family of unk 97.3 0.0025 5.4E-08 62.0 11.2 121 182-338 1-122 (205)
225 PF00398 RrnaAD: Ribosomal RNA 97.2 0.00082 1.8E-08 67.4 6.8 88 167-259 19-107 (262)
226 TIGR01444 fkbM_fam methyltrans 97.2 0.0013 2.9E-08 58.9 7.4 58 181-239 1-58 (143)
227 COG1867 TRM1 N2,N2-dimethylgua 97.1 0.0015 3.2E-08 68.2 8.5 119 163-314 34-155 (380)
228 PF06080 DUF938: Protein of un 97.1 0.003 6.6E-08 61.3 10.0 129 178-331 25-164 (204)
229 COG0421 SpeE Spermidine syntha 97.1 0.0049 1.1E-07 62.8 11.5 120 171-316 70-194 (282)
230 PF05219 DREV: DREV methyltran 97.0 0.0033 7.2E-08 63.0 9.5 94 178-311 94-187 (265)
231 TIGR00497 hsdM type I restrict 97.0 0.0025 5.4E-08 69.9 9.5 148 157-308 194-351 (501)
232 PF04445 SAM_MT: Putative SAM- 97.0 0.0029 6.2E-08 62.7 8.9 87 168-258 63-160 (234)
233 KOG0820 Ribosomal RNA adenine 97.0 0.0029 6.3E-08 63.6 8.7 138 158-316 37-180 (315)
234 PF08123 DOT1: Histone methyla 97.0 0.0055 1.2E-07 59.6 10.2 86 172-260 36-133 (205)
235 PF10354 DUF2431: Domain of un 96.9 0.03 6.5E-07 52.7 14.4 139 186-338 4-150 (166)
236 PLN02232 ubiquinone biosynthes 96.9 0.0029 6.3E-08 58.7 7.2 81 207-315 1-84 (160)
237 PF00145 DNA_methylase: C-5 cy 96.8 0.0046 1E-07 62.5 8.8 77 181-267 2-79 (335)
238 COG3897 Predicted methyltransf 96.8 0.0015 3.3E-08 62.8 4.6 70 178-255 79-148 (218)
239 PF05148 Methyltransf_8: Hypot 96.8 0.0052 1.1E-07 59.8 8.3 110 177-336 71-181 (219)
240 TIGR03439 methyl_EasF probable 96.7 0.019 4E-07 59.6 12.3 128 176-329 74-211 (319)
241 PF05724 TPMT: Thiopurine S-me 96.5 0.01 2.3E-07 58.2 8.4 113 174-314 33-157 (218)
242 PF06962 rRNA_methylase: Putat 96.5 0.0099 2.1E-07 54.5 7.6 107 205-330 1-112 (140)
243 KOG3010 Methyltransferase [Gen 96.5 0.011 2.4E-07 58.6 8.3 78 173-255 27-106 (261)
244 KOG3115 Methyltransferase-like 96.4 0.0075 1.6E-07 58.4 6.8 118 178-314 60-185 (249)
245 KOG0024 Sorbitol dehydrogenase 96.4 0.017 3.6E-07 59.6 9.5 104 174-314 165-275 (354)
246 PF03059 NAS: Nicotianamine sy 96.1 0.02 4.4E-07 58.1 8.4 105 180-311 122-229 (276)
247 PRK04148 hypothetical protein; 96.1 0.024 5.1E-07 51.6 7.8 68 177-255 15-83 (134)
248 KOG1975 mRNA cap methyltransfe 96.1 0.015 3.3E-07 59.8 7.3 133 167-331 108-250 (389)
249 PF01739 CheR: CheR methyltran 96.0 0.02 4.4E-07 55.3 7.4 113 178-316 31-179 (196)
250 COG0500 SmtA SAM-dependent met 96.0 0.19 4.1E-06 41.8 12.5 108 182-319 52-162 (257)
251 COG1189 Predicted rRNA methyla 96.0 0.015 3.3E-07 57.5 6.4 75 177-258 78-153 (245)
252 PRK10611 chemotaxis methyltran 95.9 0.033 7.1E-07 57.0 8.8 108 180-312 117-262 (287)
253 COG2384 Predicted SAM-dependen 95.8 0.22 4.7E-06 49.0 13.3 125 177-337 15-140 (226)
254 PF13679 Methyltransf_32: Meth 95.7 0.032 6.8E-07 50.7 7.0 61 177-237 24-90 (141)
255 TIGR00675 dcm DNA-methyltransf 95.7 0.014 3E-07 60.4 5.1 78 182-269 1-79 (315)
256 PF04989 CmcI: Cephalosporin h 95.7 0.015 3.3E-07 56.5 5.1 100 157-258 10-120 (206)
257 PF05971 Methyltransf_10: Prot 95.6 0.045 9.8E-07 56.2 8.1 147 179-333 103-275 (299)
258 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.5 0.089 1.9E-06 53.0 10.0 137 177-338 55-237 (256)
259 KOG1500 Protein arginine N-met 95.4 0.11 2.4E-06 53.9 10.3 74 178-257 177-251 (517)
260 PRK00536 speE spermidine synth 95.4 0.22 4.8E-06 50.3 12.4 118 171-330 66-187 (262)
261 COG1352 CheR Methylase of chem 95.3 0.072 1.6E-06 54.0 8.7 107 179-311 97-240 (268)
262 COG0270 Dcm Site-specific DNA 95.3 0.031 6.8E-07 58.0 6.2 83 179-268 3-86 (328)
263 PF05891 Methyltransf_PK: AdoM 95.2 0.072 1.6E-06 52.2 8.0 133 178-338 55-199 (218)
264 KOG1227 Putative methyltransfe 95.0 0.021 4.5E-07 58.3 3.5 74 178-256 194-269 (351)
265 PRK10458 DNA cytosine methylas 94.9 0.08 1.7E-06 57.7 8.2 84 179-266 88-186 (467)
266 KOG2078 tRNA modification enzy 94.9 0.012 2.5E-07 62.5 1.6 64 176-242 247-312 (495)
267 COG1064 AdhP Zn-dependent alco 94.8 0.16 3.4E-06 53.2 9.7 95 175-311 163-258 (339)
268 PF09243 Rsm22: Mitochondrial 94.7 0.13 2.8E-06 52.1 8.6 48 179-226 34-81 (274)
269 PHA01634 hypothetical protein 94.6 0.14 3E-06 46.4 7.3 72 178-256 28-99 (156)
270 COG4798 Predicted methyltransf 94.4 0.22 4.8E-06 48.2 8.7 143 174-338 44-203 (238)
271 KOG1709 Guanidinoacetate methy 94.3 0.34 7.3E-06 47.7 9.8 114 177-321 100-213 (271)
272 KOG2782 Putative SAM dependent 94.2 0.022 4.8E-07 55.8 1.6 93 170-263 35-132 (303)
273 COG1568 Predicted methyltransf 94.2 0.34 7.5E-06 49.2 9.9 81 177-260 151-232 (354)
274 PRK11524 putative methyltransf 93.9 0.11 2.3E-06 52.9 6.0 75 229-315 7-82 (284)
275 COG1063 Tdh Threonine dehydrog 93.9 0.15 3.3E-06 53.3 7.2 102 177-314 167-271 (350)
276 PRK01747 mnmC bifunctional tRN 93.6 0.41 8.8E-06 54.3 10.6 138 168-338 46-225 (662)
277 PRK09880 L-idonate 5-dehydroge 93.6 0.6 1.3E-05 48.1 10.9 100 175-314 166-268 (343)
278 PF10237 N6-adenineMlase: Prob 92.8 1.1 2.3E-05 42.2 10.3 126 160-328 6-135 (162)
279 TIGR02822 adh_fam_2 zinc-bindi 92.8 1 2.2E-05 46.4 11.1 93 174-312 161-254 (329)
280 PRK09424 pntA NAD(P) transhydr 92.7 0.73 1.6E-05 50.9 10.5 178 97-314 82-287 (509)
281 KOG3178 Hydroxyindole-O-methyl 92.7 1.1 2.3E-05 46.9 11.0 101 180-316 179-279 (342)
282 PF00107 ADH_zinc_N: Zinc-bind 92.4 0.5 1.1E-05 41.2 7.2 87 189-315 2-92 (130)
283 PRK13699 putative methylase; P 92.3 0.47 1E-05 46.8 7.6 92 232-338 3-94 (227)
284 PRK12939 short chain dehydroge 92.3 1.9 4.2E-05 41.4 11.9 126 178-314 6-144 (250)
285 PRK11524 putative methyltransf 92.1 0.31 6.6E-06 49.6 6.2 46 177-225 207-252 (284)
286 PF07279 DUF1442: Protein of u 92.1 1.2 2.7E-05 43.6 10.0 77 179-257 42-123 (218)
287 PF03141 Methyltransf_29: Puta 92.1 0.21 4.5E-06 54.5 5.1 102 180-316 119-223 (506)
288 cd08237 ribitol-5-phosphate_DH 91.8 1.1 2.5E-05 46.1 10.2 95 175-313 160-257 (341)
289 KOG1501 Arginine N-methyltrans 91.5 0.37 7.9E-06 51.7 6.1 60 180-241 68-128 (636)
290 COG4262 Predicted spermidine s 91.1 2.7 5.7E-05 44.5 11.7 80 177-258 288-374 (508)
291 PRK06181 short chain dehydroge 91.0 3 6.5E-05 40.7 11.8 75 181-257 3-86 (263)
292 PLN03209 translocon at the inn 90.9 3.7 8E-05 46.1 13.4 81 175-256 76-166 (576)
293 PF11599 AviRa: RRNA methyltra 90.8 0.53 1.2E-05 46.3 6.0 47 178-224 51-98 (246)
294 PRK07326 short chain dehydroge 90.7 2.9 6.2E-05 40.0 11.1 77 178-257 5-90 (237)
295 cd08283 FDH_like_1 Glutathione 90.7 1.1 2.4E-05 47.0 8.9 49 173-222 179-228 (386)
296 PF01555 N6_N4_Mtase: DNA meth 90.6 0.51 1.1E-05 44.8 5.7 42 176-220 189-230 (231)
297 TIGR03366 HpnZ_proposed putati 90.5 1.7 3.6E-05 43.5 9.6 101 174-312 116-218 (280)
298 KOG3045 Predicted RNA methylas 90.5 0.95 2E-05 45.8 7.5 86 178-314 180-266 (325)
299 TIGR03451 mycoS_dep_FDH mycoth 90.2 2.2 4.7E-05 44.2 10.5 99 174-312 172-276 (358)
300 PRK10309 galactitol-1-phosphat 90.2 1.8 3.9E-05 44.5 9.7 99 174-312 156-260 (347)
301 PRK07533 enoyl-(acyl carrier p 90.1 5.8 0.00013 39.0 12.9 78 178-257 9-96 (258)
302 PRK12429 3-hydroxybutyrate deh 90.0 4.5 9.6E-05 39.1 11.9 78 179-258 4-90 (258)
303 PRK07666 fabG 3-ketoacyl-(acyl 90.0 6.2 0.00014 37.8 12.9 79 179-259 7-94 (239)
304 PRK07576 short chain dehydroge 89.9 5.1 0.00011 39.5 12.5 124 178-313 8-144 (264)
305 cd08230 glucose_DH Glucose deh 89.9 2.4 5.2E-05 43.8 10.5 96 176-312 170-269 (355)
306 PRK06949 short chain dehydroge 89.8 5.9 0.00013 38.3 12.6 79 178-258 8-95 (258)
307 PRK07523 gluconate 5-dehydroge 89.7 6.8 0.00015 38.0 13.0 126 178-314 9-147 (255)
308 PRK08945 putative oxoacyl-(acy 89.6 4.6 9.9E-05 39.1 11.6 82 176-258 9-101 (247)
309 PRK06139 short chain dehydroge 89.5 6.1 0.00013 40.9 13.1 80 178-259 6-94 (330)
310 COG2933 Predicted SAM-dependen 89.1 0.83 1.8E-05 46.2 6.0 70 176-257 209-278 (358)
311 cd08239 THR_DH_like L-threonin 89.0 1.9 4.2E-05 43.9 8.8 100 174-311 159-261 (339)
312 PLN02740 Alcohol dehydrogenase 88.8 2.7 5.8E-05 44.1 10.0 51 174-230 194-246 (381)
313 TIGR03201 dearomat_had 6-hydro 88.8 2.9 6.3E-05 43.1 10.1 51 174-230 162-213 (349)
314 PRK13699 putative methylase; P 88.8 1 2.2E-05 44.5 6.3 49 176-227 161-209 (227)
315 PRK08213 gluconate 5-dehydroge 88.8 9.3 0.0002 37.2 13.2 130 178-314 11-150 (259)
316 PRK05786 fabG 3-ketoacyl-(acyl 88.6 7.6 0.00016 37.1 12.3 77 178-257 4-89 (238)
317 TIGR02825 B4_12hDH leukotriene 88.5 2.4 5.3E-05 43.0 9.2 97 174-310 134-235 (325)
318 PRK08594 enoyl-(acyl carrier p 88.3 9.1 0.0002 37.7 12.9 77 178-257 6-95 (257)
319 PRK08324 short chain dehydroge 88.2 7.6 0.00016 44.3 13.8 122 178-313 421-558 (681)
320 cd08254 hydroxyacyl_CoA_DH 6-h 88.0 2.7 5.7E-05 42.4 9.1 97 175-311 162-262 (338)
321 PRK05599 hypothetical protein; 88.0 7.7 0.00017 37.8 12.1 76 181-257 2-85 (246)
322 PRK07831 short chain dehydroge 87.9 11 0.00023 36.9 13.1 81 178-258 16-106 (262)
323 PRK07890 short chain dehydroge 87.9 8.2 0.00018 37.3 12.2 78 178-257 4-90 (258)
324 PRK07102 short chain dehydroge 87.8 9.6 0.00021 36.7 12.5 77 181-258 3-85 (243)
325 PRK06194 hypothetical protein; 87.8 9.1 0.0002 37.9 12.6 82 179-262 6-96 (287)
326 cd08238 sorbose_phosphate_red 87.7 3.7 8E-05 43.6 10.3 48 175-222 172-222 (410)
327 PRK08251 short chain dehydroge 87.6 15 0.00032 35.4 13.7 81 179-260 2-92 (248)
328 PRK12937 short chain dehydroge 87.1 8.1 0.00018 37.0 11.5 125 179-316 5-143 (245)
329 PRK07904 short chain dehydroge 87.1 8.1 0.00018 38.0 11.7 78 178-256 7-94 (253)
330 TIGR01963 PHB_DH 3-hydroxybuty 86.9 15 0.00032 35.4 13.2 78 181-260 3-89 (255)
331 PRK13394 3-hydroxybutyrate deh 86.8 9.9 0.00022 36.8 12.0 80 179-260 7-95 (262)
332 PRK08643 acetoin reductase; Va 86.7 12 0.00026 36.2 12.6 76 180-257 3-87 (256)
333 PRK07832 short chain dehydroge 86.6 7.5 0.00016 38.3 11.2 72 186-257 6-86 (272)
334 PRK08415 enoyl-(acyl carrier p 86.5 18 0.00038 36.2 13.9 78 178-257 4-91 (274)
335 PLN02827 Alcohol dehydrogenase 86.4 3.5 7.6E-05 43.3 9.1 100 174-312 189-295 (378)
336 COG0677 WecC UDP-N-acetyl-D-ma 86.3 5.9 0.00013 42.4 10.5 117 188-331 16-146 (436)
337 PRK08063 enoyl-(acyl carrier p 86.1 16 0.00035 35.1 13.1 80 178-259 3-92 (250)
338 KOG1269 SAM-dependent methyltr 86.1 1.2 2.5E-05 47.3 5.3 79 172-254 104-183 (364)
339 PRK12829 short chain dehydroge 86.1 13 0.00029 36.0 12.5 79 176-258 8-95 (264)
340 PRK07109 short chain dehydroge 86.0 15 0.00033 37.9 13.5 126 178-314 7-145 (334)
341 PRK08085 gluconate 5-dehydroge 86.0 14 0.0003 35.9 12.5 81 178-260 8-97 (254)
342 PF03721 UDPG_MGDP_dh_N: UDP-g 85.8 1.7 3.6E-05 41.5 5.8 118 188-331 7-138 (185)
343 PRK08339 short chain dehydroge 85.7 21 0.00046 35.1 13.9 79 178-257 7-93 (263)
344 PRK06505 enoyl-(acyl carrier p 85.6 18 0.00038 36.0 13.4 78 178-257 6-93 (271)
345 PRK09135 pteridine reductase; 85.5 14 0.0003 35.3 12.2 127 178-311 5-141 (249)
346 cd08281 liver_ADH_like1 Zinc-d 85.4 4.2 9.1E-05 42.4 9.1 99 174-312 187-290 (371)
347 PRK12826 3-ketoacyl-(acyl-carr 85.4 16 0.00036 34.8 12.7 79 179-259 6-93 (251)
348 PRK07063 short chain dehydroge 85.3 14 0.0003 36.0 12.3 79 178-257 6-94 (260)
349 TIGR02415 23BDH acetoin reduct 85.3 12 0.00027 36.0 11.8 76 187-263 7-91 (254)
350 PF03492 Methyltransf_7: SAM d 85.2 5.4 0.00012 41.7 9.7 77 179-255 17-113 (334)
351 PRK09186 flagellin modificatio 85.2 12 0.00026 36.1 11.7 78 179-257 4-91 (256)
352 PRK05876 short chain dehydroge 84.8 19 0.00041 35.9 13.1 79 178-258 5-92 (275)
353 PRK05872 short chain dehydroge 84.7 10 0.00022 38.2 11.3 78 178-258 8-94 (296)
354 PRK05867 short chain dehydroge 84.5 12 0.00027 36.2 11.5 79 178-258 8-95 (253)
355 PRK07774 short chain dehydroge 84.5 15 0.00032 35.4 11.9 80 178-259 5-93 (250)
356 PRK06079 enoyl-(acyl carrier p 84.4 17 0.00038 35.5 12.5 76 178-257 6-91 (252)
357 PF07091 FmrO: Ribosomal RNA m 84.4 3.6 7.9E-05 41.3 7.6 73 178-255 105-177 (251)
358 PRK07062 short chain dehydroge 84.3 29 0.00063 33.8 14.1 80 178-258 7-96 (265)
359 PRK12384 sorbitol-6-phosphate 84.2 14 0.00031 35.8 11.7 79 179-258 2-90 (259)
360 PRK09291 short chain dehydroge 84.2 17 0.00037 35.1 12.2 77 180-258 3-82 (257)
361 PRK08267 short chain dehydroge 84.1 11 0.00025 36.6 11.0 74 181-258 3-86 (260)
362 KOG1562 Spermidine synthase [A 83.9 2.2 4.7E-05 43.9 5.8 123 178-329 121-247 (337)
363 PRK06940 short chain dehydroge 83.5 23 0.0005 35.2 13.1 75 181-258 4-85 (275)
364 PF04672 Methyltransf_19: S-ad 83.5 5.4 0.00012 40.5 8.4 113 180-315 70-193 (267)
365 PRK06196 oxidoreductase; Provi 83.4 16 0.00034 37.1 12.1 76 178-259 25-109 (315)
366 PLN03154 putative allyl alcoho 83.3 6.4 0.00014 40.8 9.3 53 174-231 154-208 (348)
367 PLN02668 indole-3-acetate carb 83.3 16 0.00035 39.1 12.3 19 179-197 64-82 (386)
368 PRK07677 short chain dehydroge 83.1 22 0.00048 34.4 12.6 78 180-259 2-88 (252)
369 PRK07454 short chain dehydroge 83.0 19 0.00041 34.5 12.0 77 179-257 6-91 (241)
370 cd08294 leukotriene_B4_DH_like 82.8 5.7 0.00012 39.9 8.6 97 174-311 139-240 (329)
371 KOG3987 Uncharacterized conser 82.8 0.74 1.6E-05 45.1 1.9 44 178-228 112-155 (288)
372 PRK09242 tropinone reductase; 82.8 29 0.00064 33.6 13.3 128 178-315 8-149 (257)
373 PRK07984 enoyl-(acyl carrier p 82.6 27 0.00058 34.6 13.1 79 178-258 5-93 (262)
374 PRK06172 short chain dehydroge 82.6 28 0.0006 33.7 13.0 78 178-257 6-92 (253)
375 PRK06197 short chain dehydroge 82.3 27 0.00059 35.1 13.2 80 178-258 15-104 (306)
376 PRK07814 short chain dehydroge 82.3 24 0.00052 34.5 12.6 78 178-257 9-95 (263)
377 PRK05993 short chain dehydroge 82.1 17 0.00036 36.1 11.5 71 179-257 4-84 (277)
378 PRK07478 short chain dehydroge 82.1 25 0.00054 34.1 12.5 79 179-259 6-93 (254)
379 cd08277 liver_alcohol_DH_like 82.1 8 0.00017 40.1 9.5 51 175-231 181-233 (365)
380 PRK05855 short chain dehydroge 82.0 20 0.00044 38.9 13.1 79 179-259 315-402 (582)
381 PRK12742 oxidoreductase; Provi 82.0 19 0.00041 34.3 11.5 73 178-257 5-83 (237)
382 PF00106 adh_short: short chai 81.9 16 0.00035 32.7 10.4 76 187-263 7-94 (167)
383 PRK06603 enoyl-(acyl carrier p 81.9 33 0.00071 33.7 13.4 78 178-257 7-94 (260)
384 COG3129 Predicted SAM-dependen 81.5 2 4.4E-05 42.8 4.4 84 177-261 77-165 (292)
385 COG2961 ComJ Protein involved 81.5 18 0.00039 36.5 11.0 146 150-331 55-210 (279)
386 TIGR02818 adh_III_F_hyde S-(hy 81.5 7.9 0.00017 40.4 9.2 50 174-230 181-233 (368)
387 PRK06182 short chain dehydroge 81.2 14 0.0003 36.4 10.5 72 179-258 3-83 (273)
388 PRK06113 7-alpha-hydroxysteroi 81.2 30 0.00064 33.6 12.7 80 178-259 10-98 (255)
389 PRK08703 short chain dehydroge 81.2 20 0.00043 34.4 11.3 80 178-258 5-96 (239)
390 PRK05866 short chain dehydroge 81.0 22 0.00048 35.8 12.1 77 179-257 40-125 (293)
391 PRK05717 oxidoreductase; Valid 80.9 20 0.00044 34.8 11.4 77 178-259 9-94 (255)
392 cd00401 AdoHcyase S-adenosyl-L 80.8 9.2 0.0002 41.3 9.5 89 177-312 200-289 (413)
393 KOG3673 FtsJ-like RNA methyltr 80.5 5.3 0.00011 44.1 7.5 18 182-199 271-288 (845)
394 PRK06914 short chain dehydroge 80.4 40 0.00087 33.1 13.5 82 179-261 3-93 (280)
395 KOG1197 Predicted quinone oxid 80.3 6 0.00013 40.2 7.3 77 173-254 141-220 (336)
396 PRK08159 enoyl-(acyl carrier p 80.2 41 0.0009 33.4 13.6 79 178-258 9-97 (272)
397 cd08295 double_bond_reductase_ 80.0 8.4 0.00018 39.3 8.7 52 174-231 147-201 (338)
398 PRK06701 short chain dehydroge 79.7 28 0.00061 35.0 12.3 124 178-313 45-182 (290)
399 cd05285 sorbitol_DH Sorbitol d 79.6 12 0.00027 38.1 9.8 101 173-311 157-264 (343)
400 PRK07060 short chain dehydroge 79.6 23 0.00051 33.8 11.2 77 178-261 8-89 (245)
401 TIGR03589 PseB UDP-N-acetylglu 79.5 27 0.00058 35.8 12.2 76 179-258 4-83 (324)
402 cd08278 benzyl_alcohol_DH Benz 79.5 16 0.00035 37.9 10.7 97 175-311 183-284 (365)
403 PRK08340 glucose-1-dehydrogena 79.4 42 0.00091 32.7 13.2 75 181-258 2-85 (259)
404 PRK07097 gluconate 5-dehydroge 79.3 48 0.001 32.4 13.6 80 178-259 9-97 (265)
405 TIGR01832 kduD 2-deoxy-D-gluco 79.2 26 0.00057 33.6 11.5 77 178-258 4-89 (248)
406 cd08231 MDR_TM0436_like Hypoth 78.9 15 0.00032 37.8 10.2 97 177-311 176-279 (361)
407 cd08301 alcohol_DH_plants Plan 78.7 12 0.00026 38.8 9.5 51 174-230 183-235 (369)
408 PRK06077 fabG 3-ketoacyl-(acyl 78.6 50 0.0011 31.6 13.3 124 179-315 6-143 (252)
409 PRK08589 short chain dehydroge 78.6 49 0.0011 32.6 13.4 78 178-258 5-91 (272)
410 COG5459 Predicted rRNA methyla 78.5 2 4.3E-05 45.2 3.4 46 180-226 115-160 (484)
411 PRK07889 enoyl-(acyl carrier p 78.5 19 0.00042 35.3 10.4 76 178-257 6-93 (256)
412 PRK05875 short chain dehydroge 78.4 52 0.0011 32.2 13.6 80 178-258 6-95 (276)
413 PRK06997 enoyl-(acyl carrier p 78.3 38 0.00083 33.3 12.6 78 178-257 5-92 (260)
414 PRK12743 oxidoreductase; Provi 78.3 32 0.00069 33.5 11.9 77 179-257 2-88 (256)
415 PRK05650 short chain dehydroge 77.6 29 0.00063 34.0 11.5 75 181-257 2-85 (270)
416 TIGR02819 fdhA_non_GSH formald 77.6 13 0.00029 39.4 9.5 111 174-312 181-299 (393)
417 cd08242 MDR_like Medium chain 77.5 23 0.0005 35.5 10.9 92 174-310 151-243 (319)
418 PRK07825 short chain dehydroge 77.4 36 0.00079 33.4 12.1 74 179-258 5-87 (273)
419 PRK06179 short chain dehydroge 77.2 20 0.00043 35.1 10.1 69 179-257 4-81 (270)
420 PRK07024 short chain dehydroge 77.1 25 0.00054 34.2 10.8 75 180-257 3-86 (257)
421 PLN02896 cinnamyl-alcohol dehy 77.1 40 0.00086 34.7 12.7 81 179-262 10-92 (353)
422 COG0300 DltE Short-chain dehyd 76.9 50 0.0011 33.6 12.9 87 177-267 4-99 (265)
423 TIGR02632 RhaD_aldol-ADH rhamn 76.9 38 0.00082 38.8 13.5 80 179-259 414-503 (676)
424 cd08293 PTGR2 Prostaglandin re 76.8 12 0.00026 38.1 8.7 74 175-254 149-229 (345)
425 PRK08416 7-alpha-hydroxysteroi 76.6 72 0.0016 31.1 13.9 80 178-258 7-96 (260)
426 PLN02702 L-idonate 5-dehydroge 76.6 26 0.00056 36.2 11.2 99 174-311 177-284 (364)
427 PF11899 DUF3419: Protein of u 76.5 4.6 0.0001 43.1 5.6 52 169-223 26-77 (380)
428 PLN02780 ketoreductase/ oxidor 76.5 51 0.0011 33.8 13.3 61 178-239 52-114 (320)
429 PRK05653 fabG 3-ketoacyl-(acyl 76.3 62 0.0013 30.6 13.1 77 179-257 5-90 (246)
430 PRK07067 sorbitol dehydrogenas 76.3 30 0.00066 33.5 11.1 75 179-258 6-89 (257)
431 PF05430 Methyltransf_30: S-ad 76.1 2 4.3E-05 38.6 2.4 77 231-338 33-109 (124)
432 PRK06180 short chain dehydroge 76.1 41 0.00088 33.2 12.1 75 179-258 4-87 (277)
433 cd08300 alcohol_DH_class_III c 76.0 21 0.00046 37.0 10.4 52 174-231 182-235 (368)
434 PRK07370 enoyl-(acyl carrier p 75.9 24 0.00052 34.6 10.3 80 178-258 5-96 (258)
435 PRK12859 3-ketoacyl-(acyl-carr 75.4 52 0.0011 32.1 12.5 82 178-260 5-107 (256)
436 COG0604 Qor NADPH:quinone redu 75.3 20 0.00043 37.2 9.9 103 175-315 139-244 (326)
437 PRK06101 short chain dehydroge 75.3 36 0.00077 32.8 11.2 69 185-258 6-80 (240)
438 PRK12744 short chain dehydroge 75.1 41 0.00088 32.7 11.6 124 179-315 8-148 (257)
439 PRK06124 gluconate 5-dehydroge 75.1 78 0.0017 30.5 13.6 78 178-257 10-96 (256)
440 PRK08278 short chain dehydroge 75.0 40 0.00086 33.4 11.7 126 178-314 5-150 (273)
441 PRK07775 short chain dehydroge 75.0 65 0.0014 31.8 13.2 77 180-258 11-96 (274)
442 PLN02514 cinnamyl-alcohol dehy 74.9 16 0.00035 37.8 9.2 93 177-311 179-274 (357)
443 PLN02586 probable cinnamyl alc 74.9 15 0.00032 38.3 8.9 96 176-311 181-277 (360)
444 KOG3201 Uncharacterized conser 74.8 5.1 0.00011 38.0 4.7 78 178-255 29-109 (201)
445 PRK06125 short chain dehydroge 74.7 67 0.0015 31.2 13.1 79 178-257 6-89 (259)
446 PF04378 RsmJ: Ribosomal RNA s 74.6 8.3 0.00018 38.7 6.6 145 150-330 24-178 (245)
447 cd08234 threonine_DH_like L-th 74.6 31 0.00067 34.7 11.0 98 173-310 154-255 (334)
448 PRK06128 oxidoreductase; Provi 74.6 45 0.00097 33.5 12.1 123 178-312 54-191 (300)
449 PRK08265 short chain dehydroge 74.2 57 0.0012 31.9 12.5 75 179-258 6-89 (261)
450 TIGR03206 benzo_BadH 2-hydroxy 74.1 79 0.0017 30.2 13.3 79 179-259 3-90 (250)
451 PLN02989 cinnamyl-alcohol dehy 74.1 44 0.00096 33.7 12.0 76 179-257 5-85 (325)
452 PRK06482 short chain dehydroge 73.7 33 0.00072 33.7 10.7 74 181-259 4-86 (276)
453 TIGR01202 bchC 2-desacetyl-2-h 73.6 20 0.00044 36.3 9.3 86 177-312 143-231 (308)
454 PRK06057 short chain dehydroge 73.6 37 0.0008 32.9 10.9 73 178-257 6-87 (255)
455 PRK08303 short chain dehydroge 73.5 88 0.0019 31.8 14.0 78 178-257 7-103 (305)
456 TIGR03026 NDP-sugDHase nucleot 73.3 31 0.00068 36.8 11.1 117 188-330 7-137 (411)
457 cd08296 CAD_like Cinnamyl alco 73.2 18 0.0004 36.7 9.0 97 174-310 159-257 (333)
458 cd08255 2-desacetyl-2-hydroxye 73.1 32 0.0007 33.6 10.4 47 173-220 92-139 (277)
459 cd05188 MDR Medium chain reduc 73.1 37 0.00081 32.4 10.7 71 177-255 133-207 (271)
460 PRK06500 short chain dehydroge 73.1 46 0.001 31.8 11.4 75 179-258 6-89 (249)
461 PRK07231 fabG 3-ketoacyl-(acyl 73.0 77 0.0017 30.2 12.9 79 179-260 5-92 (251)
462 KOG4174 Uncharacterized conser 73.0 1.1E+02 0.0025 31.0 16.5 189 178-386 56-259 (282)
463 cd08285 NADP_ADH NADP(H)-depen 72.7 33 0.00072 35.0 10.8 97 174-311 162-265 (351)
464 PLN02178 cinnamyl-alcohol dehy 72.7 18 0.00039 38.1 8.9 95 177-311 177-272 (375)
465 PRK08993 2-deoxy-D-gluconate 3 72.4 38 0.00083 32.9 10.7 75 179-257 10-93 (253)
466 cd08236 sugar_DH NAD(P)-depend 72.3 32 0.00069 34.9 10.5 102 173-311 154-257 (343)
467 PF07942 N2227: N2227-like pro 72.0 1.1E+02 0.0025 31.1 14.1 45 177-224 55-99 (270)
468 PRK05693 short chain dehydroge 71.8 36 0.00078 33.5 10.4 70 181-258 3-81 (274)
469 PRK12746 short chain dehydroge 71.7 68 0.0015 30.9 12.2 77 179-257 6-98 (254)
470 cd08298 CAD2 Cinnamyl alcohol 71.7 38 0.00082 34.1 10.8 92 174-311 163-255 (329)
471 cd08232 idonate-5-DH L-idonate 71.1 35 0.00076 34.5 10.4 52 174-230 161-213 (339)
472 PRK10538 malonic semialdehyde 70.7 41 0.0009 32.5 10.5 68 186-257 6-82 (248)
473 PRK09072 short chain dehydroge 70.7 62 0.0013 31.5 11.8 77 179-258 5-89 (263)
474 PRK06935 2-deoxy-D-gluconate 3 70.6 76 0.0017 30.7 12.4 78 178-258 14-100 (258)
475 KOG3350 Uncharacterized conser 69.9 25 0.00055 33.8 8.2 90 156-261 50-147 (217)
476 PRK12748 3-ketoacyl-(acyl-carr 69.7 77 0.0017 30.7 12.2 77 179-257 5-103 (256)
477 PRK05565 fabG 3-ketoacyl-(acyl 69.3 58 0.0013 30.9 11.1 79 179-259 5-93 (247)
478 cd08265 Zn_ADH3 Alcohol dehydr 69.3 24 0.00052 36.9 9.0 51 175-231 200-252 (384)
479 PLN02253 xanthoxin dehydrogena 69.2 86 0.0019 30.8 12.5 76 179-257 18-102 (280)
480 COG4221 Short-chain alcohol de 69.1 67 0.0015 32.3 11.4 125 180-316 7-142 (246)
481 PLN00198 anthocyanidin reducta 68.8 63 0.0014 32.9 11.8 80 174-257 4-88 (338)
482 PRK15182 Vi polysaccharide bio 68.8 20 0.00043 38.8 8.3 113 188-330 13-137 (425)
483 PRK08263 short chain dehydroge 68.7 80 0.0017 31.1 12.2 74 180-258 4-86 (275)
484 cd08233 butanediol_DH_like (2R 68.6 36 0.00078 34.8 10.0 98 173-310 167-270 (351)
485 PF05050 Methyltransf_21: Meth 68.4 9.5 0.00021 34.1 5.0 39 184-222 1-42 (167)
486 PRK05854 short chain dehydroge 68.0 80 0.0017 32.1 12.3 78 179-257 14-101 (313)
487 PRK07041 short chain dehydroge 67.7 1.1E+02 0.0023 28.9 12.5 70 187-258 4-78 (230)
488 PF13561 adh_short_C2: Enoyl-( 67.3 19 0.00041 34.8 7.2 114 189-312 5-133 (241)
489 PRK05884 short chain dehydroge 67.2 71 0.0015 30.6 11.2 66 186-257 6-77 (223)
490 PRK08862 short chain dehydroge 67.1 97 0.0021 29.9 12.2 77 179-257 5-91 (227)
491 PRK07791 short chain dehydroge 67.1 1E+02 0.0022 30.8 12.7 78 178-257 5-100 (286)
492 cd08243 quinone_oxidoreductase 67.0 33 0.00072 33.8 9.1 72 175-254 139-213 (320)
493 cd05278 FDH_like Formaldehyde 66.8 33 0.00073 34.7 9.3 97 175-310 164-265 (347)
494 PLN00015 protochlorophyllide r 66.5 65 0.0014 32.6 11.3 72 186-258 3-84 (308)
495 TIGR00561 pntA NAD(P) transhyd 66.5 39 0.00085 37.5 10.1 122 96-231 80-211 (511)
496 cd08261 Zn_ADH7 Alcohol dehydr 66.4 55 0.0012 33.1 10.7 51 174-230 155-206 (337)
497 TIGR02622 CDP_4_6_dhtase CDP-g 66.3 64 0.0014 33.1 11.3 77 179-258 4-84 (349)
498 KOG1331 Predicted methyltransf 66.2 11 0.00025 38.5 5.5 96 178-311 45-143 (293)
499 cd08286 FDH_like_ADH2 formalde 66.1 37 0.00079 34.5 9.4 50 175-230 163-214 (345)
500 PRK06484 short chain dehydroge 66.0 60 0.0013 35.3 11.6 127 176-314 266-402 (520)
No 1
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=5e-90 Score=704.25 Aligned_cols=375 Identities=69% Similarity=1.049 Sum_probs=360.3
Q ss_pred cccccccccccCCChHHHHHhhcCCCChhHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHhHhHHHHhcChHHHHHHH
Q 010971 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGAL 82 (496)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~y~~p~wl~~~l 82 (496)
+|+.++.+.|.||+.++.++... ++|++.++.||.+++.+|.+|+.++.+++++..|+..+..+++.||+|..+|+..+
T Consensus 67 ~~~~~~~~~l~lp~~~~~~~~~~-~P~L~~v~~~~~~~~~~l~dfk~l~~~~~~~~~~~~~l~~~~~~~y~y~~~l~~~~ 145 (460)
T KOG1122|consen 67 TNTFEEGDPLLLPTLEEEEEKDS-VPDLQNVDLRIVELVPVLGDFKNLKEPGRLRSEYCGQLKKDGAHYYAYGVFLAEKL 145 (460)
T ss_pred hccccccccccCccccccccccc-CCccchhhHHhhhhhhhhcchhcccccccchhhHHHHHHhcccceechHHHHHHHh
Confidence 45667789999999996655544 45999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCCCCCcccccccEEE
Q 010971 83 VEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYML 162 (496)
Q Consensus 83 ~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~~~~i~~~~~~~~G~~~i 162 (496)
++.|+..++.+|+++++.++|+++|.||+|+.+++++..|.++|+.++|.++|++.|++++++.++++++|+|++|+|++
T Consensus 146 ~e~~~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~L 225 (460)
T KOG1122|consen 146 MELFPLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYML 225 (460)
T ss_pred cccccHHHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc
Q 010971 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (496)
Q Consensus 163 Qd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~ 242 (496)
|+++|++++++|+||||++||||||||||||+|||++|+++|.|+|+|.+..|++.+.+|+++||+.|.+++++|++.||
T Consensus 226 Q~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 226 QNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP 305 (460)
T ss_pred ccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -cccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 243 -KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 243 -~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
+.+. ++||+||+||||||+|++.|++.++|.++..++.+++++|++||.+|+++| ++||+||||||||+++|||
T Consensus 306 ~~~~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv----~~GGvLVYSTCSI~~~ENE 380 (460)
T KOG1122|consen 306 EKEFP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLV----KAGGVLVYSTCSITVEENE 380 (460)
T ss_pred ccccC-cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhc----cCCcEEEEEeeecchhhhH
Confidence 4443 489999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEecCC
Q 010971 322 AVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSN 385 (496)
Q Consensus 322 ~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~~~ 385 (496)
+||+|+|.++ .++|+|+++.+|.+| .|++++|||++..+.|+|||.|++||||+|+|+|.++
T Consensus 381 ~vV~yaL~K~p~~kL~p~~~~iG~~G--~~~~~~~~psl~~~~r~yPh~hnmdgffvaKl~k~s~ 443 (460)
T KOG1122|consen 381 AVVDYALKKRPEVKLVPTGLDIGGEG--RFRGGRFHPSLKLTRRFYPHVHNMDGFFVAKLKKASN 443 (460)
T ss_pred HHHHHHHHhCCceEeccccccCCCCC--cccCcccCcchhheeeecCcccCCchHHHHHHHhhcc
Confidence 9999999998 899999999999999 7899999999999999999999999999999999983
No 2
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-69 Score=563.13 Aligned_cols=302 Identities=42% Similarity=0.658 Sum_probs=272.5
Q ss_pred HHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCC
Q 010971 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149 (496)
Q Consensus 70 ~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~~~~i 149 (496)
..|+||.|+++.|.+.||.+++++++++++.++|+++|||+++.+++++...|...|+...+. .+...++.+ ....++
T Consensus 50 ~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~-~~~~~~~~i-~~~~~~ 127 (355)
T COG0144 50 FRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKP-WVLDEVLRI-EASGPI 127 (355)
T ss_pred ccccCcHHHHHHHHHHcChHHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccC-CccccEEEe-cCCCCc
Confidence 679999999999999999999999999999999999999999999999999999999887776 455555555 455688
Q ss_pred CCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEE-EEEeCCHHHHHHHHHHHHHcCC
Q 010971 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMGV 228 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V-~A~D~s~~rl~~l~~nl~r~g~ 228 (496)
..+++|..|+|++||.+||+++.+|+|+||++||||||||||||+|||++|.+.|.+ +|+|+++.|++.+.+|++|+|+
T Consensus 128 ~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~ 207 (355)
T COG0144 128 GRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV 207 (355)
T ss_pred ccChhhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999986655 9999999999999999999999
Q ss_pred CeEEEEecCCCCCccccCCC-CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 010971 229 TNTIVCNYDGNELPKVLGLN-TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 229 ~nv~v~~~D~~~~~~~~~~~-~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~ 307 (496)
.|+.+++.|++.++...... .||+||+||||||+|+++|||+++|.+++.++..++.+|++||.+|+++| ||||+
T Consensus 208 ~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~l----k~GG~ 283 (355)
T COG0144 208 RNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL----KPGGV 283 (355)
T ss_pred CceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc----CCCCE
Confidence 99999999998886655333 49999999999999999999999999999999999999999999999998 99999
Q ss_pred EEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 308 IVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 308 LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
|||||||++++|||+||.+||+++ ++++++....++. ++..+ . +....++|+|||.|.+||||+|+|+|.
T Consensus 284 LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~-~~~~~----~-~~~~~~~r~~p~~~~~dGFFia~l~k~ 354 (355)
T COG0144 284 LVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWGP-LFEGL----G-SELGKTRRLYPHVHGTDGFFIAKLRKK 354 (355)
T ss_pred EEEEccCCchhcCHHHHHHHHHhCCCceeecccccccc-ccccc----c-cccCCeEEECCCCCCCCCeEEEEEEeC
Confidence 999999999999999999999987 8899887655433 22111 1 345678999999998899999999986
No 3
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=2.9e-67 Score=560.13 Aligned_cols=300 Identities=37% Similarity=0.596 Sum_probs=269.4
Q ss_pred hcChHHHHHHHHHhCCH-HHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecC---CC
Q 010971 72 YGYNEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS---QV 147 (496)
Q Consensus 72 y~~p~wl~~~l~~~~~~-~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~---~~ 147 (496)
..+|.|++++|..+||. +++.+|+++++.++|.+||||++|++++++.+.|.+.|+.++|+ +|++.|+++... ..
T Consensus 2 ~~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~-p~~~~g~~~~~~~~~~~ 80 (470)
T PRK11933 2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPI-PWCEEGFWIERDDEDAL 80 (470)
T ss_pred CcChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeEC-CCCCceEEEecCccccC
Confidence 35899999999999997 68999999999999999999999999999999999999999998 899999987543 23
Q ss_pred CCCCCcccccccEEEeCCcchhHHHhc--CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 010971 148 PIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 148 ~i~~~~~~~~G~~~iQd~sS~l~v~~L--~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r 225 (496)
.++.+++|..|+|++||+|||+++.+| +|++|++||||||||||||+|||++|++.|.|+|||+++.|++.+++|++|
T Consensus 81 ~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r 160 (470)
T PRK11933 81 PLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR 160 (470)
T ss_pred CcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 588999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 010971 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG 305 (496)
+|+.|+.+++.|++.+...+. ..||+||+||||||+|+++|+|+++|.|+++++..++.+|++||.+|+++| |||
T Consensus 161 ~G~~nv~v~~~D~~~~~~~~~-~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L----kpG 235 (470)
T PRK11933 161 CGVSNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL----KPG 235 (470)
T ss_pred cCCCeEEEEeCchhhhhhhch-hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc----CCC
Confidence 999999999999988765442 679999999999999999999999999999999999999999999999997 999
Q ss_pred cEEEEEeCCCCCcCCHHHHHHHHHhC-C-cEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 306 GYIVYSTCSIMVTENEAVIDYALKKR-D-VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 306 G~LVYSTCSi~~eENE~vV~~~L~~~-~-~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
|+|||||||++++|||+||++||+++ + ++++++...+ +|+.. ......++|++||.+++||||+|+|+|.
T Consensus 236 G~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~r~~P~~~~~dGfFiA~lrk~ 307 (470)
T PRK11933 236 GTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLF--PGAEK------ALTEEGFLHVFPQIYDSEGFFVARLRKT 307 (470)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHHCCCcEEeccccccc--ccccc------ccCCCCeEEECCCCCCCcceeeEEEEec
Confidence 99999999999999999999999987 3 4555543211 12110 0123467999999999999999999997
Q ss_pred CC
Q 010971 384 SN 385 (496)
Q Consensus 384 ~~ 385 (496)
..
T Consensus 308 ~~ 309 (470)
T PRK11933 308 AS 309 (470)
T ss_pred CC
Confidence 54
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=3.9e-64 Score=506.89 Aligned_cols=281 Identities=43% Similarity=0.665 Sum_probs=248.5
Q ss_pred HHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCccc-EEEecCCCCCCCCcccccccEEEeCCcchhHHH
Q 010971 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVG-LVVYDSQVPIGATPEYMAGFYMLQSASSFLPVM 172 (496)
Q Consensus 94 ~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~g-l~v~~~~~~i~~~~~~~~G~~~iQd~sS~l~v~ 172 (496)
+|++++.++|++||||++|++++++.+.|...|+.++++ +|.+.+ +.+.....++..++.|..|+|++||.+|++++.
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~ 79 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPI-PRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVAL 79 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEE-TSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEc-ccccchhccccccccchhhchhhhCCcEEecccccccccc
Confidence 689999999999999999999999999999999999888 666666 345556678899999999999999999999999
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
+|.|++|+.||||||||||||+||+++|.+.|.|+|+|++..|+..+..|++++|+.++.+++.|++.+........||+
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999899887733332246999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC-
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR- 331 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~- 331 (496)
||+||||||+|+++++|+++|.+++.++..++.+|++||.+|+++++..++|||+|||||||++++|||+||++||+++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999985444499999999999999999999999999988
Q ss_pred CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEE
Q 010971 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381 (496)
Q Consensus 332 ~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~ 381 (496)
+++++++......+|+..+ +....++|+|||.|++||||+|+|+
T Consensus 240 ~~~l~~~~~~~~~~~~~~~------~~~~~~~r~~P~~~~~dGFFiA~lr 283 (283)
T PF01189_consen 240 DFELVPIPLPEPPPGFKSY------PIGEGCLRILPHRHGTDGFFIAKLR 283 (283)
T ss_dssp SEEEECCESSTCEEESSGG------CTGGGSEEESTTTSSSSSEEEEEEE
T ss_pred CcEEEeccccccccccccc------cCCCCEEEeCCCCCCCCCEEEEEeC
Confidence 8999988766555555332 3456789999999999999999996
No 5
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2e-61 Score=513.04 Aligned_cols=302 Identities=26% Similarity=0.434 Sum_probs=271.5
Q ss_pred HhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecC
Q 010971 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145 (496)
Q Consensus 66 ~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~ 145 (496)
.+++..||||.||++.|.+.||.+++.++++++++++|+++|||+++++++++.+.|.+.|+.+++. +|++.++.+...
T Consensus 126 ~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~ 204 (431)
T PRK14903 126 KELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPG-KHSPFSLIVRKL 204 (431)
T ss_pred hhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEEC-CCCCceEEEcCC
Confidence 4688899999999999999999999999999999999999999999999999999999999999888 799999887553
Q ss_pred CCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 010971 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 146 ~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r 225 (496)
..++..+++|..|+|++||.+|++++.+|++++|++|||+||||||||++++.++++.|.|+|+|+++.|++.+++|+++
T Consensus 205 ~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 205 GVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred CCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 010971 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG 305 (496)
+|+.++.+++.|+..++... .+.||+||+||||||+|+++++|+++|.++++++..++.+|++||.+|+++| +||
T Consensus 285 ~g~~~v~~~~~Da~~l~~~~-~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L----kpG 359 (431)
T PRK14903 285 LKLSSIEIKIADAERLTEYV-QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLL----EKG 359 (431)
T ss_pred cCCCeEEEEECchhhhhhhh-hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhc----CCC
Confidence 99999999999998876433 3679999999999999999999999999999999999999999999999997 999
Q ss_pred cEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCc---CCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEE
Q 010971 306 GYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLD---FGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381 (496)
Q Consensus 306 G~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~---~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~ 381 (496)
|+|||||||++++|||+||.+||+++ +++++++... ++.+++ + ....+|++||. ++||||+|+|+
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~P~~-~~dGFf~a~L~ 428 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVEGI--W--------DGYGFLMLPDE-TLTPFYVSVLR 428 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccccc--c--------CCCcEEECcCC-CCCcEEEEEEE
Confidence 99999999999999999999999876 7887765321 111221 0 01126999995 78999999999
Q ss_pred ecC
Q 010971 382 KMS 384 (496)
Q Consensus 382 K~~ 384 (496)
|.+
T Consensus 429 k~~ 431 (431)
T PRK14903 429 KMG 431 (431)
T ss_pred eCC
Confidence 863
No 6
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=3.2e-61 Score=512.20 Aligned_cols=291 Identities=34% Similarity=0.526 Sum_probs=267.8
Q ss_pred HhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecC
Q 010971 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145 (496)
Q Consensus 66 ~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~ 145 (496)
.+++..||+|.||+++|.+.||.+++.+++++++.++|+++||||+|++++++.+.|...|+.++++ +|++.++.+...
T Consensus 141 ~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~ 219 (434)
T PRK14901 141 ERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPI-PGLPQGLRLTGN 219 (434)
T ss_pred HHHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEEC-CCCCCeEEecCC
Confidence 4588999999999999999999999999999999999999999999999999999999999999988 799999988643
Q ss_pred CCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 010971 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 146 ~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r 225 (496)
...+..+++|..|+|++||.+|++++.+|++++|++|||+|||||+||++|+++|++.|.|+|+|+++.|++.+++|+++
T Consensus 220 ~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r 299 (434)
T PRK14901 220 PGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR 299 (434)
T ss_pred CCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 33578899999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cCCCeEEEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 010971 226 MGVTNTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lk 303 (496)
+|+.+|.+++.|+..++... ..+.||+||+||||||+|+++++|+++|.+++.++..++.+|.+||.+|+++| |
T Consensus 300 ~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l----k 375 (434)
T PRK14901 300 LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL----K 375 (434)
T ss_pred cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 99999999999998775321 13689999999999999999999999999999999999999999999999997 9
Q ss_pred CCcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEe
Q 010971 304 SGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 304 pGG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
|||+|||||||++++|||+||.+||+++ ++++++. + .+++||.|++||||+|+|+|
T Consensus 376 pgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~-------~----------------~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 376 PGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPP-------K----------------QKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred CCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCC-------C----------------CccCCCCCCCCcEEEEEEEe
Confidence 9999999999999999999999999987 5665431 0 12799999999999999998
Q ss_pred cC
Q 010971 383 MS 384 (496)
Q Consensus 383 ~~ 384 (496)
.+
T Consensus 433 ~~ 434 (434)
T PRK14901 433 KS 434 (434)
T ss_pred CC
Confidence 64
No 7
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=9.1e-59 Score=492.38 Aligned_cols=297 Identities=31% Similarity=0.451 Sum_probs=260.9
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 010971 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~ 144 (496)
..+++.+||+|.||++.|...|+ +++.+++++++.++|+++|||+++++++++.+.|...|+.+.+. +|.+.++.+.
T Consensus 128 ~~~l~~~~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~- 204 (426)
T TIGR00563 128 FNALDARYLHPEWLVKRLQKAYP-GQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPH-DLAPDAVRLE- 204 (426)
T ss_pred hHhHHHHcCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeC-CCCCCeEEEC-
Confidence 34689999999999999999995 56789999999999999999999999999999999999998887 7888888764
Q ss_pred CCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
.+..+..+++|..|+|++||.+|++++.+|+|++|++|||||||||+||++++++++ .|.|+|+|+++.|++.+++|++
T Consensus 205 ~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~ 283 (426)
T TIGR00563 205 TPAAVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLK 283 (426)
T ss_pred CCCCcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHH
Confidence 444588999999999999999999999999999999999999999999999999997 6899999999999999999999
Q ss_pred HcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 010971 225 RMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (496)
Q Consensus 225 r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lk 303 (496)
++|+.. +.+..+|+...+.......||+||+||||||+|+++++|+++|.++++++..++.+|++||.+|+++| +
T Consensus 284 r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~L----k 359 (426)
T TIGR00563 284 RLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLL----K 359 (426)
T ss_pred HcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 999972 33355666544322234679999999999999999999999999999999999999999999999987 9
Q ss_pred CCcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEe
Q 010971 304 SGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 304 pGG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
|||+|||||||++++|||+||.+||+++ ++.++..+.. +. ....++|++||.+++||||+|+|+|
T Consensus 360 pgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~---~~-----------~~~~~~~~~P~~~~~dGff~a~l~k 425 (426)
T TIGR00563 360 TGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTGTP---EQ-----------VRDGGLQILPHAEEGDGFFYAKLIK 425 (426)
T ss_pred CCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCCCc---cc-----------cCCCcEEECCCCCCCCCeEEEEEEe
Confidence 9999999999999999999999999987 5655432110 00 0124689999999999999999997
Q ss_pred c
Q 010971 383 M 383 (496)
Q Consensus 383 ~ 383 (496)
.
T Consensus 426 ~ 426 (426)
T TIGR00563 426 K 426 (426)
T ss_pred C
Confidence 3
No 8
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1e-56 Score=476.86 Aligned_cols=293 Identities=32% Similarity=0.490 Sum_probs=265.5
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 010971 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~ 144 (496)
..+++..||||.||+++|.+.|| +++.+|++++++++|++||||++|++++++.+.|.+.|+.+++. +|++.++.+.
T Consensus 134 ~~~~~~~~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~- 210 (427)
T PRK10901 134 QADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPH-AVGPDAIRLE- 210 (427)
T ss_pred hhchHhHhcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeec-CCCCCeEEEC-
Confidence 45789999999999999999996 67999999999999999999999999999999999999999988 7999998774
Q ss_pred CCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
.+.++..+++|..|+|++||.+|++++.+|++++|++|||+|||||++|+++++++++ +.|+|+|+++.+++.+++|++
T Consensus 211 ~~~~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~ 289 (427)
T PRK10901 211 TPVPVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQ 289 (427)
T ss_pred CCCCcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHH
Confidence 4456888999999999999999999999999999999999999999999999999865 899999999999999999999
Q ss_pred HcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
++|+. +.++++|+..++.......||+|++||||||+|+++++|+++|.+++.++..+..+|.++|.+|..+| +|
T Consensus 290 ~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L----kp 364 (427)
T PRK10901 290 RLGLK-ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL----KP 364 (427)
T ss_pred HcCCC-eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 99986 67889999876543334679999999999999999999999999999999999999999999999987 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 305 GG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
||+|||||||++++|||++|.++++++ ++++++... + ...++|++||.|++||||+|+|+|.
T Consensus 365 GG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~----~-------------~~~~~~~~P~~~~~dGff~a~l~k~ 427 (427)
T PRK10901 365 GGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGT----P-------------QQPGRQLLPGEEDGDGFFYALLIKR 427 (427)
T ss_pred CCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCC----C-------------CCCceEECCCCCCCCCeEEEEEEEC
Confidence 999999999999999999999999886 688766421 0 0124799999999999999999874
No 9
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=9.5e-57 Score=479.21 Aligned_cols=304 Identities=32% Similarity=0.495 Sum_probs=274.9
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 010971 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~ 144 (496)
..+++.+||||.||+++|.+.||.+++.+|+++++.++|+++|||++|++++++...|...|+.+.+. +|.+.++.+..
T Consensus 140 ~~~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~ 218 (444)
T PRK14902 140 VKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEES-LLSPEALVIEK 218 (444)
T ss_pred HHHHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEc-CCCCCeEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999888 89999988754
Q ss_pred CCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
..+..+++|..|.|++||.+|++++.++.+++|++|||+|||||++|++++..+++.|.|+|+|+++.+++.+++|++
T Consensus 219 --~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~ 296 (444)
T PRK14902 219 --GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAK 296 (444)
T ss_pred --CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999999998777899999999999999999999
Q ss_pred HcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
++|+.++.++++|+..++..+. +.||+||+||||||+|+++++|+++|.+++.++..++.+|.++|.+|+++| +|
T Consensus 297 ~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~L----kp 371 (444)
T PRK14902 297 RLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYL----KK 371 (444)
T ss_pred HcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHc----CC
Confidence 9999999999999987654332 679999999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEec
Q 010971 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 305 GG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
||+|||||||++++|||.||.++++++ +++++++..+. ++.. ..+....++|++||.|++||||+|+|+|.
T Consensus 372 GG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~r~~P~~~~~dGfF~a~l~k~ 443 (444)
T PRK14902 372 GGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHEK--PDEL------VYEVKDGYLQILPNDYGTDGFFIAKLRKK 443 (444)
T ss_pred CCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEecccccc--cccc------cccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence 999999999999999999999999987 58888764332 1110 00123467999999999999999999986
Q ss_pred C
Q 010971 384 S 384 (496)
Q Consensus 384 ~ 384 (496)
+
T Consensus 444 ~ 444 (444)
T PRK14902 444 G 444 (444)
T ss_pred C
Confidence 4
No 10
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.6e-55 Score=469.86 Aligned_cols=301 Identities=26% Similarity=0.385 Sum_probs=262.8
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 010971 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~ 144 (496)
..+++..||+|.||++.|...||.+++.+++++++.++|+++|||+++++++++.+.|...|+.+.+. +|. ++.+.
T Consensus 142 ~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~-~~~--~~~~~- 217 (445)
T PRK14904 142 AERLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKS-GLP--NFFLS- 217 (445)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEc-Ccc--eEEEe-
Confidence 34588999999999999999999999999999999999999999999999999999999999987766 343 55443
Q ss_pred CCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
.. .....+.|..|.|++||++|++++.+|++++|++|||+|||||++|+++++++++.|.|+|+|+++.|++.+++|++
T Consensus 218 ~~-~~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~ 296 (445)
T PRK14904 218 KD-FSLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHAS 296 (445)
T ss_pred cc-ccccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH
Confidence 21 22333899999999999999999999999999999999999999999999999878899999999999999999999
Q ss_pred HcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 010971 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkp 304 (496)
++|+.+|.+++.|+..++. ...||+|++||||||+|+++++|+++|.++++++..++.+|.+||.+|+++| +|
T Consensus 297 ~~g~~~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l----kp 369 (445)
T PRK14904 297 ALGITIIETIEGDARSFSP---EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLL----KP 369 (445)
T ss_pred HhCCCeEEEEeCccccccc---CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 9999999999999987652 3679999999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCC-CCCceEEEEEEe
Q 010971 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH-NMDGFFVAKLKK 382 (496)
Q Consensus 305 GG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~-~~dGFFvA~l~K 382 (496)
||+|||||||++++|||+||++||+++ ++++++..... ++ .|.. .+....++|++||.+ ++||||+|+|+|
T Consensus 370 gG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~l--~~--~~~~---~~~~~~~~~~~P~~~~~~dGfF~a~l~k 442 (445)
T PRK14904 370 GGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSL--PE--PFHE---VAHPKGAILTLPGEHEGFDGGFAQRLRK 442 (445)
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEecccccc--cc--cccc---ccCCCCcEEECCCCCCCCCcEEEEEEEe
Confidence 999999999999999999999999987 67776543211 11 1110 011234689999987 889999999998
Q ss_pred cC
Q 010971 383 MS 384 (496)
Q Consensus 383 ~~ 384 (496)
..
T Consensus 443 ~~ 444 (445)
T PRK14904 443 NA 444 (445)
T ss_pred cC
Confidence 74
No 11
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=1.1e-55 Score=441.28 Aligned_cols=263 Identities=51% Similarity=0.733 Sum_probs=227.3
Q ss_pred EEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCCCCCcccccccEEEeCCcchhHHHhcCCCCCCeEeec
Q 010971 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185 (496)
Q Consensus 106 iRvNtlk~~~~~l~~~L~~~Gv~~~p~~~~~~~gl~v~~~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDm 185 (496)
||||++|++++++.+.|.+.|+.+.+.. .+.++.+......++.+++|..|+|++||.+|++++.+|++++|++|||+
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl 78 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPWC--EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDM 78 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeecC--CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEE
Confidence 6999999999999999999999876531 33344454344468999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcc
Q 010971 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265 (496)
Q Consensus 186 cAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i 265 (496)
|||||+||++|++++++.|.|+|+|+++.|++.+++|++++|+.++.+++.|+..++... ..||+||+||||||+|++
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~--~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV--PKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc--cCCCEEEEcCCCCCCccc
Confidence 999999999999999888999999999999999999999999999999999998775433 569999999999999999
Q ss_pred cCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCC
Q 010971 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344 (496)
Q Consensus 266 ~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~-~~~lv~~~~~~~~ 344 (496)
+++|+++|.++++++..++.+|++||.+|+.+| +|||+|||||||++++|||+||++||+++ ++.+++. .+.
T Consensus 157 ~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l----kpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~---~~~ 229 (264)
T TIGR00446 157 RKDPSRKKNWSEEDIQEISALQKELIDSAFDAL----KPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELP---KGD 229 (264)
T ss_pred ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEecc---CCc
Confidence 999999999999999999999999999999997 99999999999999999999999999987 5655422 111
Q ss_pred CCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEe
Q 010971 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 345 ~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
+++..+.. ......|+|++||.|++||||+|+|+|
T Consensus 230 ~~~~~~~~---~~~~~~~~r~~P~~~~~dGfF~a~l~k 264 (264)
T TIGR00446 230 EFFGANKG---KEEVKGALRVFPQIYDCEGFFVAKLRK 264 (264)
T ss_pred cccccccc---ccccCCeEEECCCCCCCCcEEEEEEEC
Confidence 11111110 012356899999999999999999986
No 12
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-42 Score=347.42 Aligned_cols=255 Identities=31% Similarity=0.463 Sum_probs=207.1
Q ss_pred HHHhCC-HHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHH-----------HcC--CccCCCCcCCcccEEEec---
Q 010971 82 LVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLI-----------NRG--VNLDPLSKWSKVGLVVYD--- 144 (496)
Q Consensus 82 l~~~~~-~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~-----------~~G--v~~~p~~~~~~~gl~v~~--- 144 (496)
..+.|. .+++..|++.+..+.|.++|+.........+...++ .+| ++.....+|++.++.+..
T Consensus 32 ~l~~f~~~~e~~~~~~~ir~~Lps~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~~ 111 (375)
T KOG2198|consen 32 ALDHFDKEDEFGDFWETIRKPLPSTFRYTALVNNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEKDVK 111 (375)
T ss_pred HHhcCcchHHHHHHHHHHHhccchhhhHHHhccchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhhcCc
Confidence 555666 899999999999999999998766544444333222 234 322222378877664321
Q ss_pred -----CCCCCCCCc-----ccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCC---CcEEEEEeC
Q 010971 145 -----SQVPIGATP-----EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEM 211 (496)
Q Consensus 145 -----~~~~i~~~~-----~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~---~g~V~A~D~ 211 (496)
...++...+ ++..|.|+.||++||+|+++|+++||++||||||||||||.+|.+.+.. .|.|+|||+
T Consensus 112 ~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~ 191 (375)
T KOG2198|consen 112 LDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDV 191 (375)
T ss_pred ccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEeccc
Confidence 112233333 3457999999999999999999999999999999999999988887653 469999999
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-------CCCCcCEEEECCCCCCCCcccCCchhhcc-CCHHHHHHH
Q 010971 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------GLNTVDRVLLDAPCSGTGVISKDESVKTS-KSLEDIQKC 283 (496)
Q Consensus 212 s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-------~~~~fD~VLlDaPCSg~G~i~r~p~~k~~-~s~~~i~~l 283 (496)
+..|+..|+..+.++...++.+++.|+..+|... ....||+||||+||||.|+++++|+++-. |....-..|
T Consensus 192 d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L 271 (375)
T KOG2198|consen 192 DPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGL 271 (375)
T ss_pred CHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCC
Confidence 9999999999999998889999999988877652 23579999999999999999999999776 877777899
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC--CcEEeecCC
Q 010971 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR--DVKLVPCGL 340 (496)
Q Consensus 284 ~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~--~~~lv~~~~ 340 (496)
..+|.+||.+++++| |+||+|||||||++|.|||+||+.+|+.. .+++++++.
T Consensus 272 ~~LQ~~iL~rgl~lL----k~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 272 HALQLRILRRGLRLL----KVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVSG 326 (375)
T ss_pred hHHHHHHHHHHHHHh----cCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceeecc
Confidence 999999999999997 99999999999999999999999999886 577877643
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.9e-36 Score=305.67 Aligned_cols=284 Identities=30% Similarity=0.416 Sum_probs=224.9
Q ss_pred CHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc----CCC----CcCCcccEEEecCCCCCCCCcccccc
Q 010971 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL----DPL----SKWSKVGLVVYDSQVPIGATPEYMAG 158 (496)
Q Consensus 87 ~~~e~~~~lea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~----~p~----~~~~~~gl~v~~~~~~i~~~~~~~~G 158 (496)
+...+.++.-....+.|.++|+||++..-++....|...++.. -|. .+.++ .+.++..+..+...+.|..|
T Consensus 115 ~~~~~~~l~~t~~~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~-~ll~~~~~n~i~~~~ly~~g 193 (413)
T KOG2360|consen 115 KVKSLRELKLTMKIPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVE-NLIIFPPSNFIVEHELYKNG 193 (413)
T ss_pred hHHHHHHhhccCCCCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceeccccch-hhcccCCCcceeeccccccC
Confidence 4445555555444689999999999988888888887766651 111 00111 22233344457778999999
Q ss_pred cEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC
Q 010971 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238 (496)
Q Consensus 159 ~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~ 238 (496)
++++||.+|++|+++|+|.+|.+|+|+||+||.||+|+|..|.|.|.|+|+|.++.|.+.+...+...|+.++.....|+
T Consensus 194 ~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df 273 (413)
T KOG2360|consen 194 KFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDF 273 (413)
T ss_pred ceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred CCCccccCCCCcCEEEECCCCCCCCcccCCchhh--ccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK--TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k--~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
...+.......+..||+||+|||+|+..+.-.+. -....+.+..|...|..++.+|+.+ ..--.|||||||++
T Consensus 274 ~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~f-----p~~k~vvystcs~~ 348 (413)
T KOG2360|consen 274 LNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTF-----PNLKRLVYSTCSLH 348 (413)
T ss_pred cCCCCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcC-----Cchhheeeecchhh
Confidence 7643333336788999999999999988765554 3346688999999999999999985 34468999999999
Q ss_pred CcCCHHHHHHHHHhC--CcEEee--cCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEe
Q 010971 317 VTENEAVIDYALKKR--DVKLVP--CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 317 ~eENE~vV~~~L~~~--~~~lv~--~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
.+|||+||...|... .+.+.+ +...|...|...| +-.+.|+|..|....++|||+|.|.+
T Consensus 349 reene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~------~~~e~~lr~~p~~~~~~gffva~fer 412 (413)
T KOG2360|consen 349 REENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTF------SGAEHCLRASPKSTLTIGFFVALFER 412 (413)
T ss_pred hhhhhHHHHHHHhhChhHhhhchhhcchhhhhcCCccc------cccccceecccCCCCcceEEEEEeec
Confidence 999999999999765 344444 3333433444333 23467899999999999999999876
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.66 E-value=1.2e-15 Score=161.00 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=123.1
Q ss_pred CCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 010971 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~ 229 (496)
.-..++++|+|..|.....++..+ .+|.+|||+|||+|+.+++++ +.+...|+++|+|+..++.+++|+..+|+.
T Consensus 195 dl~~g~ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa--~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~ 269 (396)
T PRK15128 195 DIQGGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSAL--MGGCSQVVSVDTSQEALDIARQNVELNKLD 269 (396)
T ss_pred ecccccccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHH--hCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 345678899999997766555443 358999999999999987654 345569999999999999999999999985
Q ss_pred --eEEEEecCCCCCcccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 010971 230 --NTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (496)
Q Consensus 230 --nv~v~~~D~~~~~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG 305 (496)
++.++++|+..+...+ ....||+|++|||+.... ...+.........++..|+++| +||
T Consensus 270 ~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~-------------k~~l~~~~~~y~~l~~~a~~lL----k~g 332 (396)
T PRK15128 270 LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVEN-------------KSQLMGACRGYKDINMLAIQLL----NPG 332 (396)
T ss_pred CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCC-------------hHHHHHHHHHHHHHHHHHHHHc----CCC
Confidence 6899999987653222 135799999999975432 2334444445677888899987 999
Q ss_pred cEEEEEeCCCCCc--CCHHHHHHHHHhC--CcEEee
Q 010971 306 GYIVYSTCSIMVT--ENEAVIDYALKKR--DVKLVP 337 (496)
Q Consensus 306 G~LVYSTCSi~~e--ENE~vV~~~L~~~--~~~lv~ 337 (496)
|.|+++|||-+.. +=.++|..+.... .++++.
T Consensus 333 G~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 333 GILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred eEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 9999999995544 3345555555443 455554
No 15
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.61 E-value=1.9e-15 Score=158.39 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=124.9
Q ss_pred CcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-
Q 010971 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN- 230 (496)
Q Consensus 152 ~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n- 230 (496)
....++|+|..|..+...+...+. |.+|||+||-+||.|+|.|. ++...|+++|+|+..++.+++|++-+|+..
T Consensus 194 ~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~ 268 (393)
T COG1092 194 VDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGD 268 (393)
T ss_pred CCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCcc
Confidence 446789999999988776655543 99999999999999987654 455699999999999999999999999853
Q ss_pred -EEEEecCCCCCccccC--CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 010971 231 -TIVCNYDGNELPKVLG--LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 231 -v~v~~~D~~~~~~~~~--~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~ 307 (496)
+.++++|+..+-.... ...||+|++||| .+..++........-...|+..|+++| +|||+
T Consensus 269 ~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPP-------------sF~r~k~~~~~~~rdy~~l~~~~~~iL----~pgG~ 331 (393)
T COG1092 269 RHRFIVGDVFKWLRKAERRGEKFDLIILDPP-------------SFARSKKQEFSAQRDYKDLNDLALRLL----APGGT 331 (393)
T ss_pred ceeeehhhHHHHHHHHHhcCCcccEEEECCc-------------ccccCcccchhHHHHHHHHHHHHHHHc----CCCCE
Confidence 7899999877643332 248999999999 344555556667778889999999997 99999
Q ss_pred EEEEeCCCCCcCCH--HHHHHHHHh
Q 010971 308 IVYSTCSIMVTENE--AVIDYALKK 330 (496)
Q Consensus 308 LVYSTCSi~~eENE--~vV~~~L~~ 330 (496)
|+.||||-+..... ..|...+..
T Consensus 332 l~~~s~~~~~~~~~f~~~i~~a~~~ 356 (393)
T COG1092 332 LVTSSCSRHFSSDLFLEIIARAAAA 356 (393)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHh
Confidence 99999998776654 344444443
No 16
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.54 E-value=1.6e-13 Score=154.76 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=121.5
Q ss_pred CCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-
Q 010971 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT- 229 (496)
Q Consensus 151 ~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~- 229 (496)
-+...++|.|..|.....++..+. .|.+|||+|||+|+.+++++.. +...|+++|+|+..++.+++|+..+|+.
T Consensus 514 ~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~ 588 (702)
T PRK11783 514 LTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSG 588 (702)
T ss_pred cCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 345677899999987766655443 4889999999999999988864 4457999999999999999999999986
Q ss_pred -eEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 010971 230 -NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 230 -nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L 308 (496)
++.+++.|+.++...+ ...||+|++|||+.+.+- ...++......+..|+..+.++| +|||.|
T Consensus 589 ~~v~~i~~D~~~~l~~~-~~~fDlIilDPP~f~~~~-----------~~~~~~~~~~~y~~l~~~a~~lL----~~gG~l 652 (702)
T PRK11783 589 RQHRLIQADCLAWLKEA-REQFDLIFIDPPTFSNSK-----------RMEDSFDVQRDHVALIKDAKRLL----RPGGTL 652 (702)
T ss_pred cceEEEEccHHHHHHHc-CCCcCEEEECCCCCCCCC-----------ccchhhhHHHHHHHHHHHHHHHc----CCCCEE
Confidence 6899999987653222 368999999999876531 11112233445677888888886 999999
Q ss_pred EEEeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 309 VYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 309 VYSTCSi~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
++++|+-..... ..++...++.+..+
T Consensus 653 ~~~~~~~~~~~~----~~~~~~~g~~~~~i 678 (702)
T PRK11783 653 YFSNNKRGFKMD----EEGLAKLGLKAEEI 678 (702)
T ss_pred EEEeCCccCChh----HHHHHhCCCeEEEE
Confidence 999999766543 34444545544443
No 17
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.53 E-value=2e-13 Score=128.97 Aligned_cols=138 Identities=27% Similarity=0.320 Sum_probs=114.2
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
..+....|.|++|++++|+|||+|+.|+.++ ++.+.++|+|+|.++.+++.+++|+.++|++|+.++.+|+-......
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~- 100 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL- 100 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-
Confidence 4566677899999999999999999999999 67788999999999999999999999999999999999997654323
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
..||+|++- |.|- ...||+.++..| +|||+||...-+ .||+...-.
T Consensus 101 -~~~daiFIG----Gg~~----------------------i~~ile~~~~~l----~~ggrlV~nait---lE~~~~a~~ 146 (187)
T COG2242 101 -PSPDAIFIG----GGGN----------------------IEEILEAAWERL----KPGGRLVANAIT---LETLAKALE 146 (187)
T ss_pred -CCCCEEEEC----CCCC----------------------HHHHHHHHHHHc----CcCCeEEEEeec---HHHHHHHHH
Confidence 379999983 2221 245788999887 999999985444 488888888
Q ss_pred HHHhCCc-EEeecCC
Q 010971 327 ALKKRDV-KLVPCGL 340 (496)
Q Consensus 327 ~L~~~~~-~lv~~~~ 340 (496)
.+++.++ +++.+.+
T Consensus 147 ~~~~~g~~ei~~v~i 161 (187)
T COG2242 147 ALEQLGGREIVQVQI 161 (187)
T ss_pred HHHHcCCceEEEEEe
Confidence 8888887 7776643
No 18
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.49 E-value=8.1e-14 Score=120.97 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=91.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
|.+|||+|||+|..+++++... ...++++|+++..++.++.|+...++ .++.+++.|+..+...+....||.|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 6799999999999999998885 57999999999999999999999998 46999999998876445568999999999
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+......... .......++.++.++| +|||.+++.+|.
T Consensus 79 P~~~~~~~~~~--------------~~~~~~~~~~~~~~~L----~~gG~~~~~~~~ 117 (117)
T PF13659_consen 79 PYGPRSGDKAA--------------LRRLYSRFLEAAARLL----KPGGVLVFITPA 117 (117)
T ss_dssp STTSBTT------------------GGCHHHHHHHHHHHHE----EEEEEEEEEEEG
T ss_pred CCccccccchh--------------hHHHHHHHHHHHHHHc----CCCeEEEEEeCC
Confidence 98754211111 1114557788998887 999999999874
No 19
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.47 E-value=1.1e-12 Score=130.59 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=104.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~~~fD~VLlD 256 (496)
++.+|||+|||+|..++.++..+++ ..|+++|+|+..++.++.|+..+|+ .+++.|.... +... .+.||+|++|
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~~~~-~~~fDlVv~N 160 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALPTAL-RGRVDILAAN 160 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcchhc-CCCEeEEEEC
Confidence 3468999999999999999987653 5899999999999999999998874 5677787543 2211 2579999999
Q ss_pred CCCCCCCcccC-CchhhccCCHHHH---HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCC
Q 010971 257 APCSGTGVISK-DESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 257 aPCSg~G~i~r-~p~~k~~~s~~~i---~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~ 332 (496)
|||..++.+.. .|++++......+ ......++.++..|.++| +|||.+++.+.. ++..-|..++++++
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L----~~gG~l~l~~~~----~~~~~v~~~l~~~g 232 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL----APGGHLLVETSE----RQAPLAVEAFARAG 232 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc----CCCCEEEEEECc----chHHHHHHHHHHCC
Confidence 99998887654 5555543332222 134567888999999887 999999997653 23333444555544
No 20
>PRK14967 putative methyltransferase; Provisional
Probab=99.46 E-value=1.9e-12 Score=126.32 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=109.6
Q ss_pred ccEEEeCCcchhHHHh---cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE
Q 010971 158 GFYMLQSASSFLPVMA---LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~---L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~ 234 (496)
|.|..|..+ .+.+.. +.+.++.+|||+|||+|..+..++.. +.+.|+++|+++.+++.++.|+..+|+ ++.++
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~ 89 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVR 89 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEE
Confidence 556666544 333333 34678899999999999999988875 235899999999999999999999987 57788
Q ss_pred ecCCCCCccccCCCCcCEEEECCCC---CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 235 NYDGNELPKVLGLNTVDRVLLDAPC---SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 235 ~~D~~~~~~~~~~~~fD~VLlDaPC---Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+.|.... +....||.|++|||+ +..+...+.|...|....+.. ..+..++..+.++| +|||+|++.
T Consensus 90 ~~d~~~~---~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~a~~~L----k~gG~l~~~ 158 (223)
T PRK14967 90 RGDWARA---VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGR----AVLDRLCDAAPALL----APGGSLLLV 158 (223)
T ss_pred ECchhhh---ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHH----HHHHHHHHHHHHhc----CCCcEEEEE
Confidence 8887653 223689999999874 444444555555554332221 33466888888886 999999986
Q ss_pred eCCCCCcCCHHHHHHHHHhCCcE
Q 010971 312 TCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 312 TCSi~~eENE~vV~~~L~~~~~~ 334 (496)
+.++. +-..+-..++..++.
T Consensus 159 ~~~~~---~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 159 QSELS---GVERTLTRLSEAGLD 178 (223)
T ss_pred Eeccc---CHHHHHHHHHHCCCC
Confidence 55543 222233445555543
No 21
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.46 E-value=5.8e-14 Score=141.97 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=104.5
Q ss_pred CCCcccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 010971 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~ 229 (496)
.-+.+.++|+|..|.....++.... .|.+|||+||-+||+|++.+. ++...|+++|.|...++.+++|+..+|+.
T Consensus 98 ~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 98 DLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLD 172 (286)
T ss_dssp ESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred EcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3345678999999999887766553 488999999999999987553 45558999999999999999999999975
Q ss_pred --eEEEEecCCCCCccc-cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 230 --NTIVCNYDGNELPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 230 --nv~v~~~D~~~~~~~-~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
.+.++..|+..+-.. ...+.||+|++|||...-| .+. +..-+.+|+..|+++| +|||
T Consensus 173 ~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~----------~~~------~~~~y~~L~~~a~~ll----~~gG 232 (286)
T PF10672_consen 173 LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKS----------KFD------LERDYKKLLRRAMKLL----KPGG 232 (286)
T ss_dssp CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESS----------TCE------HHHHHHHHHHHHHHTE----EEEE
T ss_pred ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCC----------HHH------HHHHHHHHHHHHHHhc----CCCC
Confidence 588999998664221 1246899999999965422 111 1244678899999987 9999
Q ss_pred EEEEEeCCCCCcCC
Q 010971 307 YIVYSTCSIMVTEN 320 (496)
Q Consensus 307 ~LVYSTCSi~~eEN 320 (496)
.|+.||||-....+
T Consensus 233 ~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 233 LLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEEE--TTS-HH
T ss_pred EEEEEcCCcccCHH
Confidence 99999999877654
No 22
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=4.3e-12 Score=126.58 Aligned_cols=234 Identities=15% Similarity=0.117 Sum_probs=139.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCC-CHHHH---HHHHH--HcCCccCCCCcCCc-ccEEEecCCCC
Q 010971 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKT-RRRDL---ADVLI--NRGVNLDPLSKWSK-VGLVVYDSQVP 148 (496)
Q Consensus 76 ~wl~~~l~~~~~~~e~~~~lea~~~~~P~~iRvNtlk~-~~~~l---~~~L~--~~Gv~~~p~~~~~~-~gl~v~~~~~~ 148 (496)
.|+...|.. +..++..++.......+.+++.|..+. +.+++ .+.+. ..|.++..+..+.. .+..+..+
T Consensus 9 ~~~~~~l~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~--- 83 (275)
T PRK09328 9 REATARLAS--PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKVS--- 83 (275)
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEcCcEEEEC---
Confidence 444555544 667788888888777777888876554 43332 22222 23443322100000 11111111
Q ss_pred CCCCcccccccEEEeCCcchhHHH---hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 010971 149 IGATPEYMAGFYMLQSASSFLPVM---ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 149 i~~~~~~~~G~~~iQd~sS~l~v~---~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r 225 (496)
.|.++.....-.++-. .+...++.+|||+|||+|..+..++..++ ...|+++|+++..++.++.|+..
T Consensus 84 --------~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~ 154 (275)
T PRK09328 84 --------PGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKH 154 (275)
T ss_pred --------CCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh
Confidence 1112111111112211 23456788999999999999999998874 47999999999999999999984
Q ss_pred cCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCccc-CCchhhccCCHHHH---HHHHHHHHHHHHHHHHhhhhc
Q 010971 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS-KDESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~-r~p~~k~~~s~~~i---~~l~~lQ~~LL~~A~~~l~~~ 301 (496)
....++.++..|..... ..+.||+|++||||...+.+. -.++++..-....+ ......+..++..+.++|
T Consensus 155 ~~~~~i~~~~~d~~~~~---~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L--- 228 (275)
T PRK09328 155 GLGARVEFLQGDWFEPL---PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL--- 228 (275)
T ss_pred CCCCcEEEEEccccCcC---CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc---
Confidence 44457889999875432 136899999999998877654 23333311111111 112345677888888886
Q ss_pred CCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcE
Q 010971 302 SKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 302 lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~ 334 (496)
+|||++++.+ .. ...+.+..++...++.
T Consensus 229 -k~gG~l~~e~-g~---~~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 229 -KPGGWLLLEI-GY---DQGEAVRALLAAAGFA 256 (275)
T ss_pred -ccCCEEEEEE-Cc---hHHHHHHHHHHhCCCc
Confidence 9999998843 22 1223455566655543
No 23
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.44 E-value=1.4e-12 Score=134.58 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=97.4
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
++.+++|++|||.|||+|+.++.++. + ...|+++|+++.++..++.|++.+|+.++.+...|+..++.. .+.||.
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--~~~~D~ 251 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--SESVDA 251 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--cCCCCE
Confidence 34678999999999999999876544 3 368999999999999999999999999888899999987643 378999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|++||||........ ..+..++.++|..+.+.| +|||+++|.+++-
T Consensus 252 Iv~dPPyg~~~~~~~-------------~~~~~l~~~~l~~~~r~L----k~gG~lv~~~~~~ 297 (329)
T TIGR01177 252 IATDPPYGRSTTAAG-------------DGLESLYERSLEEFHEVL----KSEGWIVYAVPTR 297 (329)
T ss_pred EEECCCCcCcccccC-------------CchHHHHHHHHHHHHHHc----cCCcEEEEEEcCC
Confidence 999999864322111 123456778898888876 9999999998875
No 24
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.44 E-value=2.9e-12 Score=120.56 Aligned_cols=154 Identities=15% Similarity=0.124 Sum_probs=110.2
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
+.+....+...++.+|||+|||+|..+..++... ..|+++|+++..++.+++|+...++ ++.+...|.....
T Consensus 8 ~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 8 SLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV---- 79 (179)
T ss_pred HHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc----
Confidence 4555566666778899999999999999888753 2899999999999999999998887 5788888876543
Q ss_pred CCCcCEEEECCCCCCCC-cccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTG-VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G-~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~ 325 (496)
.+.||.|++++|+.... ....++...+.+.... .....+..+|..+.++| +|||.+++++++.. +...+.
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~L----k~gG~~~~~~~~~~---~~~~~~ 150 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGK--DGRKVIDRFLDELPEIL----KEGGRVQLIQSSLN---GEPDTF 150 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCC--chHHHHHHHHHhHHHhh----CCCCEEEEEEeccC---ChHHHH
Confidence 25899999999985332 2222222211111000 11234567788888876 99999999987764 456667
Q ss_pred HHHHhCCcEEee
Q 010971 326 YALKKRDVKLVP 337 (496)
Q Consensus 326 ~~L~~~~~~lv~ 337 (496)
.+|++.++.+..
T Consensus 151 ~~l~~~gf~~~~ 162 (179)
T TIGR00537 151 DKLDERGFRYEI 162 (179)
T ss_pred HHHHhCCCeEEE
Confidence 777777766544
No 25
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.43 E-value=5.9e-12 Score=120.59 Aligned_cols=138 Identities=20% Similarity=0.325 Sum_probs=104.5
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~ 246 (496)
.+....+.+.+|.+|||+|||+|..++.++..++..+.|+++|+++.+++.+++|+..+|+ .++.++..|+..+....
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~- 108 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI- 108 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-
Confidence 4444567888999999999999999999998887678999999999999999999999994 67888888887643222
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
...||+|+++.. .. ....+|..+.++| +|||+||+.+|++ ++...+..
T Consensus 109 ~~~~D~V~~~~~---~~----------------------~~~~~l~~~~~~L----kpgG~lv~~~~~~---~~~~~~~~ 156 (198)
T PRK00377 109 NEKFDRIFIGGG---SE----------------------KLKEIISASWEII----KKGGRIVIDAILL---ETVNNALS 156 (198)
T ss_pred CCCCCEEEECCC---cc----------------------cHHHHHHHHHHHc----CCCcEEEEEeecH---HHHHHHHH
Confidence 257999998531 10 1134677777776 9999999988865 44555566
Q ss_pred HHHhCC--cEEeec
Q 010971 327 ALKKRD--VKLVPC 338 (496)
Q Consensus 327 ~L~~~~--~~lv~~ 338 (496)
.|++.+ ++++.+
T Consensus 157 ~l~~~g~~~~~~~~ 170 (198)
T PRK00377 157 ALENIGFNLEITEV 170 (198)
T ss_pred HHHHcCCCeEEEEE
Confidence 666665 344444
No 26
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=1.4e-12 Score=128.90 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=118.1
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~ 245 (496)
++|.+....+....+|||+|||.|..++.+|+...+ ..|+++|+++...+.+++|++.+++.. +.+++.|...+.+..
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 456566666667999999999999999999998765 899999999999999999999999864 999999999887666
Q ss_pred CCCCcCEEEECCCCCCCCcc-cCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHH
Q 010971 246 GLNTVDRVLLDAPCSGTGVI-SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i-~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV 324 (496)
...+||.|+|+||+.-.|.. ..+|.-...+.. ....-.+++..|..+| ||||++.+ +++.|.-.-+
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e-----~~~~le~~i~~a~~~l----k~~G~l~~----V~r~erl~ei 178 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSRLNENPLRAIARHE-----ITLDLEDLIRAAAKLL----KPGGRLAF----VHRPERLAEI 178 (248)
T ss_pred cccccCEEEeCCCCCCCccccCcChhhhhhhhh-----hcCCHHHHHHHHHHHc----cCCCEEEE----EecHHHHHHH
Confidence 55679999999999988876 333322221111 1112245788888886 99999987 6777777666
Q ss_pred HHHHHhCCc
Q 010971 325 DYALKKRDV 333 (496)
Q Consensus 325 ~~~L~~~~~ 333 (496)
-..+.+.++
T Consensus 179 ~~~l~~~~~ 187 (248)
T COG4123 179 IELLKSYNL 187 (248)
T ss_pred HHHHHhcCC
Confidence 666766543
No 27
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.42 E-value=9.9e-12 Score=125.96 Aligned_cols=141 Identities=15% Similarity=0.186 Sum_probs=101.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+.++.+|||+|||+|..++.++...++ ..|+|+|+|+..++.++.|+.++|+. ++.+++.|+... +....||.|+
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~---~~~~~fD~Iv 194 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA---LPGRKYDLIV 194 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---cCCCCccEEE
Confidence 345679999999999999999987653 69999999999999999999999985 589999997542 2235799999
Q ss_pred ECCCCCCCCcccCCc-hhhccCCHHHH----HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 255 LDAPCSGTGVISKDE-SVKTSKSLEDI----QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 255 lDaPCSg~G~i~r~p-~~k~~~s~~~i----~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
+||||...+.+..-+ ++. ..+... ..-...++.++..+.+.| +|||+|+.-+.. ..+.|...+.
T Consensus 195 ~NPPy~~~~~~~~l~~~~~--~ep~~al~gg~dGl~~~~~il~~a~~~L----~~gG~l~~e~g~-----~~~~v~~~~~ 263 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYH--HEPELALASGEDGLDLVRRILAEAADHL----NENGVLVVEVGN-----SMEALEEAYP 263 (284)
T ss_pred ECCCCCCccchhhCCHhhh--cCHHHHhcCCCcHHHHHHHHHHHHHHhc----CCCCEEEEEECc-----CHHHHHHHHH
Confidence 999998776554322 221 111111 012246678899998886 999999865442 2234555554
Q ss_pred hC
Q 010971 330 KR 331 (496)
Q Consensus 330 ~~ 331 (496)
..
T Consensus 264 ~~ 265 (284)
T TIGR03533 264 DV 265 (284)
T ss_pred hC
Confidence 43
No 28
>PTZ00146 fibrillarin; Provisional
Probab=99.41 E-value=7.9e-12 Score=126.49 Aligned_cols=140 Identities=24% Similarity=0.296 Sum_probs=94.3
Q ss_pred chhHHHh------cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC
Q 010971 167 SFLPVMA------LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~------L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~ 240 (496)
|-|++.+ +.+++|++|||+|||||.+|+++|.++...|.|+|+|+++..++.+...+... .||.++..|++.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~ 192 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY 192 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC
Confidence 5566555 35789999999999999999999999988899999999987776666655432 578888899864
Q ss_pred Ccc-ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHH-HHHHHHHhhhhcCCCCcEEEEE---eCCC
Q 010971 241 LPK-VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ-LILAAIDMVDANSKSGGYIVYS---TCSI 315 (496)
Q Consensus 241 ~~~-~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~-LL~~A~~~l~~~lkpGG~LVYS---TCSi 315 (496)
... .+....||+||+|.. .|+ |.+ ++.+|..+| ||||+|+.+ .|.-
T Consensus 193 p~~y~~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~L----KpGG~~vI~ika~~id 243 (293)
T PTZ00146 193 PQKYRMLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFL----KNGGHFIISIKANCID 243 (293)
T ss_pred hhhhhcccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhc----cCCCEEEEEEeccccc
Confidence 210 011257999999984 111 232 344566665 999999884 3333
Q ss_pred CCcCCHHHHH---HHHHhCCcEEee
Q 010971 316 MVTENEAVID---YALKKRDVKLVP 337 (496)
Q Consensus 316 ~~eENE~vV~---~~L~~~~~~lv~ 337 (496)
....-++++. ..|+..+|+.+.
T Consensus 244 ~g~~pe~~f~~ev~~L~~~GF~~~e 268 (293)
T PTZ00146 244 STAKPEVVFASEVQKLKKEGLKPKE 268 (293)
T ss_pred cCCCHHHHHHHHHHHHHHcCCceEE
Confidence 3233344422 335555555443
No 29
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.40 E-value=3.5e-12 Score=130.90 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=72.9
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+...++.+|||+|||+|..++.+|.. ...|+|+|+++..++.+++|++.+|+.|+.+...|+..+.... .+.||.|
T Consensus 169 l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-~~~~D~V 244 (315)
T PRK03522 169 VRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-GEVPDLV 244 (315)
T ss_pred HHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc-CCCCeEE
Confidence 34346789999999999999999884 2689999999999999999999999988999999997664321 2479999
Q ss_pred EECCCCCCCC
Q 010971 254 LLDAPCSGTG 263 (496)
Q Consensus 254 LlDaPCSg~G 263 (496)
++|||++|.+
T Consensus 245 v~dPPr~G~~ 254 (315)
T PRK03522 245 LVNPPRRGIG 254 (315)
T ss_pred EECCCCCCcc
Confidence 9999988764
No 30
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.40 E-value=3.3e-12 Score=123.88 Aligned_cols=90 Identities=20% Similarity=0.288 Sum_probs=78.1
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
....++.+++|++|||+|||+|..|..|+.+.+..|.|+++|+++..++.+++|++++|+.|+.++.+|+...... ..
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~--~~ 145 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP--LA 145 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc--cC
Confidence 4455678899999999999999999999998876789999999999999999999999999999999998765322 26
Q ss_pred CcCEEEECCCCC
Q 010971 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~fD~VLlDaPCS 260 (496)
.||+|++++++.
T Consensus 146 ~fD~Ii~~~~~~ 157 (215)
T TIGR00080 146 PYDRIYVTAAGP 157 (215)
T ss_pred CCCEEEEcCCcc
Confidence 899999998753
No 31
>PRK04266 fibrillarin; Provisional
Probab=99.39 E-value=1.3e-11 Score=121.25 Aligned_cols=106 Identities=20% Similarity=0.323 Sum_probs=82.5
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc--cccCCCCcC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP--KVLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~--~~~~~~~fD 251 (496)
+.+.+|.+|||+|||+|+.+.+++..++ .|.|+|+|+++.+++.+.++++.. .|+.++.+|+.... ..+ ...||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l-~~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHV-VEKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhc-cccCC
Confidence 6778999999999999999999999986 689999999999999988887754 67888889986521 111 25699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+|++|.+ +|+ ....+|..+.++| ||||+||.+
T Consensus 144 ~i~~d~~---------~p~---------------~~~~~L~~~~r~L----KpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVA---------QPN---------------QAEIAIDNAEFFL----KDGGYLLLA 175 (226)
T ss_pred EEEECCC---------Chh---------------HHHHHHHHHHHhc----CCCcEEEEE
Confidence 9998865 111 0123467777775 999999985
No 32
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.39 E-value=2.6e-12 Score=110.48 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=84.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCC-CCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDG-NELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~-~~~~~~~~~~~fD~VLl 255 (496)
||.+|||+|||+|..+..+++..+ ...|+|+|+|+..++.+++++...+. .++.+++.|+ .... ....||.|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD---FLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT---TSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc---cCCCCCEEEE
Confidence 689999999999999999999654 47899999999999999999977766 5799999999 2222 1267999998
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+. .+...++ .. ..+.++|..+.+.| +|||+||++||
T Consensus 77 ~~-~~~~~~~----------------~~-~~~~~~l~~~~~~L----~pgG~lvi~~~ 112 (112)
T PF12847_consen 77 SG-FTLHFLL----------------PL-DERRRVLERIRRLL----KPGGRLVINTC 112 (112)
T ss_dssp CS-GSGGGCC----------------HH-HHHHHHHHHHHHHE----EEEEEEEEEE-
T ss_pred CC-Ccccccc----------------ch-hHHHHHHHHHHHhc----CCCcEEEEEEC
Confidence 54 1111011 11 34566788888876 99999999998
No 33
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.37 E-value=2.2e-12 Score=120.89 Aligned_cols=124 Identities=21% Similarity=0.226 Sum_probs=95.5
Q ss_pred CCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc
Q 010971 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~ 243 (496)
|+++.+.+..+...++.+|||+|||+|..+++++...+ ...|+++|+++..++.++.|+..+++.++.+...|......
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 45666666666666889999999999999999998764 35799999999999999999999999888899999865432
Q ss_pred ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 244 ~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
...||+|+++||....+ ........+++..|.+.| +|||.|++..
T Consensus 96 ---~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~L----k~~G~l~lv~ 140 (170)
T PF05175_consen 96 ---DGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRYL----KPGGRLFLVI 140 (170)
T ss_dssp ---TTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHHE----EEEEEEEEEE
T ss_pred ---ccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHhc----cCCCEEEEEe
Confidence 37899999999932211 112235577899998887 9999986543
No 34
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=5.1e-12 Score=124.68 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=96.8
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
..+..+.+.+|.+|||+|||+|-.+..++...+ .|.|+++|+|..+|..+++.+...|..++.++.+|+..+| ++++
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--f~D~ 118 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--FPDN 118 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--CCCC
Confidence 344555566999999999999999999999987 7999999999999999999999999999999999999999 6779
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
+||+|.+ +.|+ .++... .+.|.++.+.| ||||+++... ++.-.+.
T Consensus 119 sFD~vt~---~fgl------------------rnv~d~-~~aL~E~~RVl----KpgG~~~vle--~~~p~~~ 163 (238)
T COG2226 119 SFDAVTI---SFGL------------------RNVTDI-DKALKEMYRVL----KPGGRLLVLE--FSKPDNP 163 (238)
T ss_pred ccCEEEe---eehh------------------hcCCCH-HHHHHHHHHhh----cCCeEEEEEE--cCCCCch
Confidence 9999987 2222 122222 23578888876 9999876644 4434443
No 35
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.36 E-value=1.5e-11 Score=131.89 Aligned_cols=87 Identities=26% Similarity=0.292 Sum_probs=73.6
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc--cCCCCc
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLNTV 250 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~--~~~~~f 250 (496)
.+.+.+|.+|||+|||+|..|+.+|... ..|+|+|+|+.+++.+++|+..+|+.|+.+..+|+...... +....|
T Consensus 292 ~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 292 WLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred HhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCC
Confidence 3466789999999999999999998864 68999999999999999999999999999999998653211 223579
Q ss_pred CEEEECCCCCCC
Q 010971 251 DRVLLDAPCSGT 262 (496)
Q Consensus 251 D~VLlDaPCSg~ 262 (496)
|+|++|||++|.
T Consensus 369 D~Vi~dPPr~g~ 380 (443)
T PRK13168 369 DKVLLDPPRAGA 380 (443)
T ss_pred CEEEECcCCcCh
Confidence 999999998864
No 36
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.34 E-value=1.1e-11 Score=132.38 Aligned_cols=88 Identities=24% Similarity=0.205 Sum_probs=73.7
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccc-cCCCC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKV-LGLNT 249 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~-~~~~~ 249 (496)
..+.+.++++|||+|||+|..++.+|... ..|+|+|+++..++.++.|+..+|+.|+.++.+|+..+ +.. .....
T Consensus 286 ~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 286 EALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 34456788999999999999999998763 58999999999999999999999999999999998653 211 12256
Q ss_pred cCEEEECCCCCCC
Q 010971 250 VDRVLLDAPCSGT 262 (496)
Q Consensus 250 fD~VLlDaPCSg~ 262 (496)
||+|++|||.+|.
T Consensus 363 ~D~vi~dPPr~G~ 375 (431)
T TIGR00479 363 PDVLLLDPPRKGC 375 (431)
T ss_pred CCEEEECcCCCCC
Confidence 9999999998765
No 37
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.34 E-value=1.6e-11 Score=120.37 Aligned_cols=144 Identities=16% Similarity=0.205 Sum_probs=103.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
.+.+|||+|||+|..+..++...++ ..|+++|+++..++.++.++..+|+.++.+.+.|+... +..+.||.|++||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---LPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---CcCCceeEEEECC
Confidence 4569999999999999999988654 68999999999999999999999998899999998653 2237899999999
Q ss_pred CCCCCCcccC--------CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 258 PCSGTGVISK--------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 258 PCSg~G~i~r--------~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
|+...+.+.. .|...+...... ......++..+.++| +|||.+++.. +. ...+.+..++.
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~~~~~~i~~~~~~L----~~gG~~~~~~-~~---~~~~~~~~~l~ 230 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDG----LDFYRRIIAQAPRLL----KPGGWLLLEI-GY---DQGEAVRALFE 230 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcH----HHHHHHHHHHHHHhc----ccCCEEEEEE-Cc---cHHHHHHHHHH
Confidence 9998765432 111111111111 122356788888876 9999998853 22 22344555566
Q ss_pred hCCcEEee
Q 010971 330 KRDVKLVP 337 (496)
Q Consensus 330 ~~~~~lv~ 337 (496)
+.+++.+.
T Consensus 231 ~~gf~~v~ 238 (251)
T TIGR03534 231 AAGFADVE 238 (251)
T ss_pred hCCCCceE
Confidence 66655443
No 38
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.32 E-value=2.9e-12 Score=126.43 Aligned_cols=139 Identities=21% Similarity=0.262 Sum_probs=87.2
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
..+..+.+++|.+|||+|||+|-.|..++..+++.|.|+++|+|+.+|+.+++++...+..+|.++.+|+..+| ++++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp--~~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP--FPDN 115 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----S-TT
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc--CCCC
Confidence 44556778899999999999999999999888778999999999999999999999999999999999999988 4568
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L 328 (496)
+||.|.+ +.|+ +.-| . +.+.|.+..+.| ||||+++....+- -+|. .+..+.
T Consensus 116 sfD~v~~-----~fgl-rn~~---------------d-~~~~l~E~~RVL----kPGG~l~ile~~~--p~~~-~~~~~~ 166 (233)
T PF01209_consen 116 SFDAVTC-----SFGL-RNFP---------------D-RERALREMYRVL----KPGGRLVILEFSK--PRNP-LLRALY 166 (233)
T ss_dssp -EEEEEE-----ES-G-GG-S---------------S-HHHHHHHHHHHE----EEEEEEEEEEEEB---SSH-HHHHHH
T ss_pred ceeEEEH-----HhhH-HhhC---------------C-HHHHHHHHHHHc----CCCeEEEEeeccC--CCCc-hhhcee
Confidence 9999986 2221 1111 1 233577788876 9999999866543 4454 444444
Q ss_pred HhCCcEEeec
Q 010971 329 KKRDVKLVPC 338 (496)
Q Consensus 329 ~~~~~~lv~~ 338 (496)
.-+-..++|.
T Consensus 167 ~~y~~~ilP~ 176 (233)
T PF01209_consen 167 KFYFKYILPL 176 (233)
T ss_dssp HH--------
T ss_pred eeeecccccc
Confidence 4333334553
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.30 E-value=7.7e-11 Score=102.45 Aligned_cols=111 Identities=27% Similarity=0.386 Sum_probs=88.8
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..++..+++ +.|+++|+++..++.++.++..+++.++.++..|+....... ...|
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 89 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS-LPEP 89 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh-cCCC
Confidence 34456677899999999999999999998765 799999999999999999999999988888888876532212 2589
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
|.|+++.+ . . ...+++..+.+.| +|||+|+.+.
T Consensus 90 D~v~~~~~----------------~--~-------~~~~~l~~~~~~L----k~gG~li~~~ 122 (124)
T TIGR02469 90 DRVFIGGS----------------G--G-------LLQEILEAIWRRL----RPGGRIVLNA 122 (124)
T ss_pred CEEEECCc----------------c--h-------hHHHHHHHHHHHc----CCCCEEEEEe
Confidence 99998642 0 0 1236788888886 9999998764
No 40
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.28 E-value=1.4e-11 Score=128.41 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=62.6
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc------
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------ 244 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~------ 244 (496)
..++++.++ +|||++||.|.+|+.||... ..|+|+|+++..++.++.|++.+|+.|+.++..++.++...
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~ 265 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKARE 265 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-G
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHH
Confidence 344566666 89999999999999998764 68999999999999999999999999999998776443211
Q ss_pred --------cCCCCcCEEEECCCCCCCC
Q 010971 245 --------LGLNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 245 --------~~~~~fD~VLlDaPCSg~G 263 (496)
+....+|.||+|||-+|.+
T Consensus 266 ~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 266 FNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp GTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 1123689999999999976
No 41
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=3.4e-11 Score=116.17 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=74.4
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~ 249 (496)
..+|.+.+|++|||+|||+|..+..++.+++..|.|+++|+++..++.+++|+.++|+.+ +.+.++|+...... ...
T Consensus 65 ~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~--~~~ 142 (205)
T PRK13944 65 CELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK--HAP 142 (205)
T ss_pred HHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--CCC
Confidence 455778899999999999999999999998767899999999999999999999999864 88999998764322 368
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
||+|+++..
T Consensus 143 fD~Ii~~~~ 151 (205)
T PRK13944 143 FDAIIVTAA 151 (205)
T ss_pred ccEEEEccC
Confidence 999999865
No 42
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=4.6e-11 Score=116.01 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=76.4
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
.....++++++|++|||+|||+|..|..++.+++..+.|+++|+++..++.++++++.+|+.|+.++++|+..... ..
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--~~ 143 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--EN 143 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--cC
Confidence 3445567889999999999999999999999987778999999999999999999999999999999999876432 23
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
..||+|++++
T Consensus 144 ~~fD~I~~~~ 153 (212)
T PRK13942 144 APYDRIYVTA 153 (212)
T ss_pred CCcCEEEECC
Confidence 6899999864
No 43
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.28 E-value=6.5e-11 Score=112.15 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=99.9
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
..++...|.+.++.+|||+|||+|..+..++...+ .+.|+++|+++..++.+++|+.++++.++.+++.|+... +
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~---~- 94 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE---L- 94 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---c-
Confidence 34455667778899999999999999999998754 479999999999999999999999988888888887421 2
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
...||+|+++..- + .+ ..++..+.+.| +|||+|+++... .++...+..
T Consensus 95 ~~~~D~v~~~~~~---~---------------~~-------~~~l~~~~~~L----k~gG~lv~~~~~---~~~~~~~~~ 142 (187)
T PRK08287 95 PGKADAIFIGGSG---G---------------NL-------TAIIDWSLAHL----HPGGRLVLTFIL---LENLHSALA 142 (187)
T ss_pred CcCCCEEEECCCc---c---------------CH-------HHHHHHHHHhc----CCCeEEEEEEec---HhhHHHHHH
Confidence 2579999986320 0 01 23566777775 999999986533 466666667
Q ss_pred HHHhCCcEE
Q 010971 327 ALKKRDVKL 335 (496)
Q Consensus 327 ~L~~~~~~l 335 (496)
++++++++.
T Consensus 143 ~l~~~g~~~ 151 (187)
T PRK08287 143 HLEKCGVSE 151 (187)
T ss_pred HHHHCCCCc
Confidence 787776543
No 44
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.27 E-value=2.9e-11 Score=115.49 Aligned_cols=147 Identities=22% Similarity=0.289 Sum_probs=107.1
Q ss_pred ccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC
Q 010971 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D 237 (496)
|.-+.|...+.+....+.+.++.+|||+|||+|..|..++...+ .+.|+++|+++.+++.+++|++++|+.++.+++.|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 44456777777777888888999999999999999999987654 47999999999999999999999999889999998
Q ss_pred CCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 238 ~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
+....... ...+|.|++|.. . . ...+|..+.+.| +|||+|++.++++
T Consensus 99 ~~~~~~~~-~~~~d~v~~~~~----~---------------~-------~~~~l~~~~~~L----kpgG~li~~~~~~-- 145 (196)
T PRK07402 99 APECLAQL-APAPDRVCIEGG----R---------------P-------IKEILQAVWQYL----KPGGRLVATASSL-- 145 (196)
T ss_pred hHHHHhhC-CCCCCEEEEECC----c---------------C-------HHHHHHHHHHhc----CCCeEEEEEeecH--
Confidence 85421111 135788887632 0 0 134577777765 9999999998863
Q ss_pred cCCHHHHHHHHHh---CCcEEeecC
Q 010971 318 TENEAVIDYALKK---RDVKLVPCG 339 (496)
Q Consensus 318 eENE~vV~~~L~~---~~~~lv~~~ 339 (496)
+.-..+...+.. ++++.+.+.
T Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 146 -EGLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred -HHHHHHHHHHHhcCCCCceEEEEE
Confidence 222233344443 356666553
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.26 E-value=3.2e-11 Score=116.17 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=94.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC-CCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~-~~~~~~~~~~~fD~VLlD 256 (496)
++.+|||+|||+|..+..++..+++ +.|+|+|+++.+++.+++++...++.++.+++.|+ ..++..+..+.||.|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6889999999999999999988754 68999999999999999999999998999999998 655533445789999986
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
.|.. |........ ...+..+|..+.++| +|||+|+++|+ ++..+.++++
T Consensus 119 ~~~p------------~~~~~~~~~--~~~~~~~l~~i~~~L----kpgG~l~i~~~------~~~~~~~~~~ 167 (202)
T PRK00121 119 FPDP------------WPKKRHHKR--RLVQPEFLALYARKL----KPGGEIHFATD------WEGYAEYMLE 167 (202)
T ss_pred CCCC------------CCCcccccc--ccCCHHHHHHHHHHc----CCCCEEEEEcC------CHHHHHHHHH
Confidence 5421 100000000 012455778887776 99999998764 5555555554
No 46
>PRK14968 putative methyltransferase; Provisional
Probab=99.26 E-value=1.6e-10 Score=108.21 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=109.1
Q ss_pred ccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEe
Q 010971 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCN 235 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n--v~v~~ 235 (496)
|.|..... +.+.+..+...++.+|||+|||+|..+..++.. ...|+++|+++..+..+++++..+++.+ +.++.
T Consensus 4 ~~~~p~~~-~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (188)
T PRK14968 4 EVYEPAED-SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIR 79 (188)
T ss_pred cccCcchh-HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEe
Confidence 34444333 444455555678899999999999999999886 3789999999999999999999998876 77888
Q ss_pred cCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 236 YDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.|..... ....||.|++++|+...+-.....+ .+......-.........++..+.++| +|||.+++..+++
T Consensus 80 ~d~~~~~---~~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~L----k~gG~~~~~~~~~ 151 (188)
T PRK14968 80 SDLFEPF---RGDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYL----KPGGRILLLQSSL 151 (188)
T ss_pred ccccccc---cccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhc----CCCeEEEEEEccc
Confidence 8875432 2247999999999865432111000 000000000001223456788888876 9999999888776
Q ss_pred CCcCCHHHHHHHHHhCCcEEee
Q 010971 316 MVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 316 ~~eENE~vV~~~L~~~~~~lv~ 337 (496)
.. ++ -+..++.+.+++++.
T Consensus 152 ~~--~~-~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 152 TG--ED-EVLEYLEKLGFEAEV 170 (188)
T ss_pred CC--HH-HHHHHHHHCCCeeee
Confidence 42 23 344556666666543
No 47
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.25 E-value=9.5e-11 Score=120.14 Aligned_cols=121 Identities=14% Similarity=0.182 Sum_probs=92.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
..+|||+|||+|..+++++...+ ...|+|+|+|+..++.+++|++++|+. ++.+++.|+.... ....||.|++||
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l---~~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL---PGRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC---CCCCccEEEECC
Confidence 36899999999999999998764 378999999999999999999999986 4899999975422 225799999999
Q ss_pred CCCCCCcccC-------CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 258 PCSGTGVISK-------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 258 PCSg~G~i~r-------~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|+.+.+.+.. .|...+.-..+ -....+.++..+.+.| +|||++++-
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~d----Gl~~~~~i~~~a~~~L----~pgG~l~~E 262 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDD----GLDLVRRILAEAPDYL----TEDGVLVVE 262 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCc----hHHHHHHHHHHHHHhc----CCCCEEEEE
Confidence 9998765432 22222211111 1245677899998886 999999864
No 48
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.24 E-value=6.8e-11 Score=108.12 Aligned_cols=111 Identities=14% Similarity=0.255 Sum_probs=91.0
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
+.+.+|||+|||+|..+..|+....+.+.++++|+|+..++.++.+++++++.|+.+.+.|...++..+. +.||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 5688999999999999999996555568999999999999999999999999999999999998764322 689999998
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.++... .....+|..+.+++ ++||.++.+.+.
T Consensus 81 ~~l~~~----------------------~~~~~~l~~~~~~l----k~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF----------------------PDPEKVLKNIIRLL----KPGGILIISDPN 112 (152)
T ss_dssp STGGGT----------------------SHHHHHHHHHHHHE----EEEEEEEEEEEE
T ss_pred Cchhhc----------------------cCHHHHHHHHHHHc----CCCcEEEEEECC
Confidence 764111 12235677888886 999999988888
No 49
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=9.6e-11 Score=115.50 Aligned_cols=126 Identities=24% Similarity=0.302 Sum_probs=103.9
Q ss_pred cccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEE
Q 010971 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIV 233 (496)
Q Consensus 155 ~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v 233 (496)
|..+-=++--+.|.+.++.+++.||.+|||+|+|+|..|++||...++.|.|+..|+..++++.+.+|++..|+.+ |.+
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 3444444445667788889999999999999999999999999999889999999999999999999999999987 888
Q ss_pred EecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE-EEe
Q 010971 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YST 312 (496)
Q Consensus 234 ~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV-YST 312 (496)
...|....... ..||+|++|.| +| | +.|.++.++| +|||.++ |+.
T Consensus 151 ~~~Dv~~~~~~---~~vDav~LDmp---------~P---W---------------~~le~~~~~L----kpgg~~~~y~P 196 (256)
T COG2519 151 KLGDVREGIDE---EDVDAVFLDLP---------DP---W---------------NVLEHVSDAL----KPGGVVVVYSP 196 (256)
T ss_pred Eeccccccccc---cccCEEEEcCC---------Ch---H---------------HHHHHHHHHh----CCCcEEEEEcC
Confidence 88998876432 48999999998 11 2 3588888887 9999764 555
Q ss_pred CC
Q 010971 313 CS 314 (496)
Q Consensus 313 CS 314 (496)
|.
T Consensus 197 ~v 198 (256)
T COG2519 197 TV 198 (256)
T ss_pred CH
Confidence 54
No 50
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.1e-10 Score=107.46 Aligned_cols=124 Identities=18% Similarity=0.238 Sum_probs=101.8
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
+...-.|..|+|+|||+|..++..+.+ +...|+|+|+++..++.+++|+.+ +..+|.++..|.+.+. ..||.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----~~~dt 111 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----GKFDT 111 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----Cccce
Confidence 345667889999999999988765544 457999999999999999999999 5567999999998875 67999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~ 332 (496)
|+.||| .|+.++|+|. ..|..|++. +.+|| |++..-+.+.+..+...++
T Consensus 112 vimNPP---FG~~~rhaDr-----------------~Fl~~Ale~--------s~vVY---siH~a~~~~f~~~~~~~~G 160 (198)
T COG2263 112 VIMNPP---FGSQRRHADR-----------------PFLLKALEI--------SDVVY---SIHKAGSRDFVEKFAADLG 160 (198)
T ss_pred EEECCC---CccccccCCH-----------------HHHHHHHHh--------hheEE---EeeccccHHHHHHHHHhcC
Confidence 999999 7777888774 357888886 47899 5888889999998888876
Q ss_pred cEE
Q 010971 333 VKL 335 (496)
Q Consensus 333 ~~l 335 (496)
..+
T Consensus 161 ~~v 163 (198)
T COG2263 161 GTV 163 (198)
T ss_pred CeE
Confidence 443
No 51
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.21 E-value=2.1e-10 Score=111.65 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=91.3
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
....+.+.+|.+|||+|||+|..+..++...+..+.|+++|+++..++.+++++.+.++.++.++.+|+..++ +..+.
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 114 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--FDDNS 114 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--CCCCC
Confidence 3455677889999999999999999999988767899999999999999999999999988999999998765 23478
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
||.|+++-. +...++ ..++|..+.+.| +|||+|+..+
T Consensus 115 fD~V~~~~~------l~~~~~----------------~~~~l~~~~~~L----k~gG~l~~~~ 151 (231)
T TIGR02752 115 FDYVTIGFG------LRNVPD----------------YMQVLREMYRVV----KPGGKVVCLE 151 (231)
T ss_pred ccEEEEecc------cccCCC----------------HHHHHHHHHHHc----CcCeEEEEEE
Confidence 999987532 111111 124677777776 9999998764
No 52
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.21 E-value=2.4e-10 Score=115.64 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=94.2
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
+.+|||+|||+|..++.++...++ ..|+|+|+|+..++.++.|++++++.+ +.++.+|.... +....||+|++||
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNP 190 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---LAGQKIDIIVSNP 190 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---CcCCCccEEEECC
Confidence 369999999999999999988653 689999999999999999999999975 89999987542 2224799999999
Q ss_pred CCCCCCcccCCchhhccCCHHHH---HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 258 PCSGTGVISKDESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i---~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+.....+...+++........+ ..-...++.++..+...| +|||+|++-++.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L----~~gG~l~~e~g~ 246 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL----KPNGFLVCEIGN 246 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc----cCCCEEEEEECc
Confidence 99776533222222111000000 011236677888888886 999999986654
No 53
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=8e-11 Score=125.64 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=92.0
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-CCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-~~~~ 249 (496)
...++..++++|||+.||.|++|++||.. ...|+|+|+++..++.+++|++.+|+.|+.+...|+..+.... ....
T Consensus 286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~ 362 (432)
T COG2265 286 LEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYK 362 (432)
T ss_pred HHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCC
Confidence 44456778999999999999999999954 4689999999999999999999999999999999998875433 2357
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
||.||+|||-+|.+ ..++....++ +| -.|||++|--.
T Consensus 363 ~d~VvvDPPR~G~~------------------------~~~lk~l~~~-----~p-~~IvYVSCNP~ 399 (432)
T COG2265 363 PDVVVVDPPRAGAD------------------------REVLKQLAKL-----KP-KRIVYVSCNPA 399 (432)
T ss_pred CCEEEECCCCCCCC------------------------HHHHHHHHhc-----CC-CcEEEEeCCHH
Confidence 99999999998876 2345544454 55 46999999653
No 54
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.21 E-value=2.9e-10 Score=107.95 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=94.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
+|.+|||+|||+|..+..++... +.+.|+|+|.++.+++.++++++++|+.++.++++|+..++. .+.||.|++++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---EEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---cCCccEEEehh
Confidence 48899999999999999888654 447899999999999999999999999889999999987632 36899999853
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh---CCcE
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK---RDVK 334 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~---~~~~ 334 (496)
.+ + ...++..+.++| +|||+++.. .....+..+..+.++ .+++
T Consensus 118 ----~~---------------~-------~~~~~~~~~~~L----kpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 118 ----LA---------------S-------LNVLLELTLNLL----KVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred ----hh---------------C-------HHHHHHHHHHhc----CCCCEEEEE----cCCCcHHHHHHHHHhhhhcCce
Confidence 00 0 112455555655 999999874 456667777777666 3677
Q ss_pred Eeec
Q 010971 335 LVPC 338 (496)
Q Consensus 335 lv~~ 338 (496)
.++.
T Consensus 164 ~~~~ 167 (181)
T TIGR00138 164 PLEV 167 (181)
T ss_pred Eeec
Confidence 6665
No 55
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.20 E-value=7.9e-11 Score=117.02 Aligned_cols=91 Identities=27% Similarity=0.383 Sum_probs=73.4
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCC--Ccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNE--LPK 243 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~--~~~ 243 (496)
..+.++.|++.||.+||+.|+|+|+.|.+|+..+++.|.|+.+|++.+|++.+++|++++|+. +|.+.+.|... ++.
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 446678899999999999999999999999999999999999999999999999999999996 69999999753 321
Q ss_pred ccCCCCcCEEEECCC
Q 010971 244 VLGLNTVDRVLLDAP 258 (496)
Q Consensus 244 ~~~~~~fD~VLlDaP 258 (496)
.. ...||.|+||-|
T Consensus 109 ~~-~~~~DavfLDlp 122 (247)
T PF08704_consen 109 EL-ESDFDAVFLDLP 122 (247)
T ss_dssp T--TTSEEEEEEESS
T ss_pred cc-cCcccEEEEeCC
Confidence 12 267999999998
No 56
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.18 E-value=8.2e-11 Score=114.31 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=73.4
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
..+|.++||++|||+|||+|..|..||.+.+..|.|+++|.++..++.+++|+.++|..||.++.+|+....... ..|
T Consensus 65 l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~--apf 142 (209)
T PF01135_consen 65 LEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE--APF 142 (209)
T ss_dssp HHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG---SE
T ss_pred HHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC--CCc
Confidence 566789999999999999999999999999888999999999999999999999999999999999987543222 689
Q ss_pred CEEEECCCC
Q 010971 251 DRVLLDAPC 259 (496)
Q Consensus 251 D~VLlDaPC 259 (496)
|+|++.+.|
T Consensus 143 D~I~v~~a~ 151 (209)
T PF01135_consen 143 DRIIVTAAV 151 (209)
T ss_dssp EEEEESSBB
T ss_pred CEEEEeecc
Confidence 999998764
No 57
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.17 E-value=3.1e-10 Score=107.65 Aligned_cols=112 Identities=21% Similarity=0.270 Sum_probs=80.7
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc------cccCCC
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVLGLN 248 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~------~~~~~~ 248 (496)
.+++|++|||+|||||+.+.+++..+...+.|+++|+++.+ +..++.+++.|....+ .....+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 45789999999999999999999988666899999999864 2346777788876532 112346
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+||+|++|+++...|.. +...+.. ...+..+|..+.++| +|||+++...
T Consensus 98 ~~D~V~~~~~~~~~g~~----------~~~~~~~-~~~~~~~l~~~~~~L----kpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYW----------DIDHLRS-IDLVELALDIAKEVL----KPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCc----------cccHHHH-HHHHHHHHHHHHHHc----cCCCEEEEEE
Confidence 79999999765444432 1112222 234667888888886 9999998753
No 58
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.17 E-value=4.4e-10 Score=118.87 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=100.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.++.+|||+|||+|..++.++...+ ...|+|+|+|+..++.+++|++++|. ++.+++.|....... ..+.||.|++
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~-~~~~FDLIVS 325 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMP-SEGKWDIIVS 325 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccc-cCCCccEEEE
Confidence 34677999999999999998887654 47899999999999999999999987 788899997543211 1257999999
Q ss_pred CCCCCCCCcccC-------CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 010971 256 DAPCSGTGVISK-------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 256 DaPCSg~G~i~r-------~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L 328 (496)
|||....+-... .|...+.-. ..--...+.|+..+.+.| +|||.+++- +. ....+-|..++
T Consensus 326 NPPYI~~~e~~l~~~~v~~EP~~AL~gG----~dGL~~yr~Ii~~a~~~L----kpgG~lilE---iG-~~Q~e~V~~ll 393 (423)
T PRK14966 326 NPPYIENGDKHLLQGDLRFEPQIALTDF----SDGLSCIRTLAQGAPDRL----AEGGFLLLE---HG-FDQGAAVRGVL 393 (423)
T ss_pred CCCCCCcchhhhcchhhhcCHHHHhhCC----CchHHHHHHHHHHHHHhc----CCCcEEEEE---EC-ccHHHHHHHHH
Confidence 999977653322 222221111 111234567788877775 999998752 22 23344555566
Q ss_pred HhCCcEEe
Q 010971 329 KKRDVKLV 336 (496)
Q Consensus 329 ~~~~~~lv 336 (496)
...++..+
T Consensus 394 ~~~Gf~~v 401 (423)
T PRK14966 394 AENGFSGV 401 (423)
T ss_pred HHCCCcEE
Confidence 66555433
No 59
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.17 E-value=3.4e-10 Score=109.36 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=72.5
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
....++.++++.+|||+|||+|..|..++.+. +.|+++|+++..++.++++++++|+.++.+...|+..... ..+
T Consensus 69 ~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~ 143 (212)
T PRK00312 69 RMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP--AYA 143 (212)
T ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC--cCC
Confidence 34456788899999999999999999888774 4899999999999999999999999999999999855321 126
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.||+|+++++|
T Consensus 144 ~fD~I~~~~~~ 154 (212)
T PRK00312 144 PFDRILVTAAA 154 (212)
T ss_pred CcCEEEEccCc
Confidence 89999998864
No 60
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.16 E-value=3.1e-10 Score=108.47 Aligned_cols=121 Identities=19% Similarity=0.166 Sum_probs=93.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.++++++.+++.++.+.+.|+..++. .+.||.|++++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---CCCccEEEEcc
Confidence 489999999999999999988654 47999999999999999999999999889999999987653 36899999852
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEe
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv 336 (496)
.+ . + ..++..+.++| +|||++++..+.. ....+..+....++.+.
T Consensus 121 ----~~------------~---~-------~~~l~~~~~~L----kpGG~lv~~~~~~----~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 121 ----VA------------S---L-------SDLVELCLPLL----KPGGRFLALKGRD----PEEEIAELPKALGGKVE 165 (187)
T ss_pred ----cc------------C---H-------HHHHHHHHHhc----CCCeEEEEEeCCC----hHHHHHHHHHhcCceEe
Confidence 00 0 0 23567777776 9999999876553 33444444444455443
No 61
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.15 E-value=2.2e-10 Score=112.69 Aligned_cols=138 Identities=17% Similarity=0.275 Sum_probs=112.5
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCC-----cEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEecCCCCC
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-----GLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNEL 241 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-----g~V~A~D~s~~rl~~l~~nl~r~g~~---nv~v~~~D~~~~ 241 (496)
.+..|.|..|.+|||||+|+|-.|.-|....++. +.|+.+|+|+++|+...++.++.++. .+.++.+|+..+
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 3556788999999999999999999999988764 79999999999999999999888774 388999999999
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
| +++..||+.-+ +.| |.++.+.|+ .|..|.+.| ||||++. |-.++.+|.
T Consensus 172 p--Fdd~s~D~yTi-----afG----------------IRN~th~~k-~l~EAYRVL----KpGGrf~---cLeFskv~~ 220 (296)
T KOG1540|consen 172 P--FDDDSFDAYTI-----AFG----------------IRNVTHIQK-ALREAYRVL----KPGGRFS---CLEFSKVEN 220 (296)
T ss_pred C--CCCCcceeEEE-----ecc----------------eecCCCHHH-HHHHHHHhc----CCCcEEE---EEEcccccc
Confidence 8 56789999864 223 333444454 578999986 9999886 888888888
Q ss_pred HHHHHHHHhCCcEEeec
Q 010971 322 AVIDYALKKRDVKLVPC 338 (496)
Q Consensus 322 ~vV~~~L~~~~~~lv~~ 338 (496)
+.+.+|....-+.++|+
T Consensus 221 ~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 221 EPLKWFYDQYSFDVLPV 237 (296)
T ss_pred HHHHHHHHhhhhhhhch
Confidence 88899888776666664
No 62
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.3e-10 Score=107.90 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=81.5
Q ss_pred cccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec
Q 010971 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
.|.++-|----.....+|++++|++||++|||+|..|..||++. +.|+++|..+.-.+.+++|++.+|+.||.+.++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 57777664333344677899999999999999999999999996 489999999999999999999999999999999
Q ss_pred CCCCCccccCCCCcCEEEECCC
Q 010971 237 DGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 237 D~~~~~~~~~~~~fD~VLlDaP 258 (496)
|+..--. ....||+|++.+-
T Consensus 128 DG~~G~~--~~aPyD~I~Vtaa 147 (209)
T COG2518 128 DGSKGWP--EEAPYDRIIVTAA 147 (209)
T ss_pred CcccCCC--CCCCcCEEEEeec
Confidence 9976422 2378999999654
No 63
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.15 E-value=4.6e-10 Score=112.37 Aligned_cols=115 Identities=22% Similarity=0.271 Sum_probs=91.1
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
...+.+|++|||+|||+|..+..++..++..+.|+++|+++.+++.+++++..+|+.++.+...|+..++ +..+.||.
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~--~~~~~fD~ 149 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP--VADNSVDV 149 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC--CCCCceeE
Confidence 3456789999999999999888888887777899999999999999999999999989999999987765 23468999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|+++.- +...|+ ...+|..+.++| +|||+|+.++-..
T Consensus 150 Vi~~~v------~~~~~d----------------~~~~l~~~~r~L----kpGG~l~i~~~~~ 186 (272)
T PRK11873 150 IISNCV------INLSPD----------------KERVFKEAFRVL----KPGGRFAISDVVL 186 (272)
T ss_pred EEEcCc------ccCCCC----------------HHHHHHHHHHHc----CCCcEEEEEEeec
Confidence 997631 111111 124678888886 9999999876443
No 64
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.14 E-value=3.2e-10 Score=113.50 Aligned_cols=117 Identities=13% Similarity=0.165 Sum_probs=88.8
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH---cCCCeEEEEecCCCCCccccCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR---MGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r---~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
...+.+.++.+|||+|||+|..+..++..++..+.|+|+|+|+.+++.++++... .+..++.+++.|+..+| ++.
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp--~~~ 143 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP--FDD 143 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC--CCC
Confidence 4456778899999999999999999988876668999999999999999877642 24567899999998887 345
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
++||.|++. .+ +..-+ ....+|.++.+.| ||||+|+.++.+-
T Consensus 144 ~sfD~V~~~-----~~-l~~~~----------------d~~~~l~ei~rvL----kpGG~l~i~d~~~ 185 (261)
T PLN02233 144 CYFDAITMG-----YG-LRNVV----------------DRLKAMQEMYRVL----KPGSRVSILDFNK 185 (261)
T ss_pred CCEeEEEEe-----cc-cccCC----------------CHHHHHHHHHHHc----CcCcEEEEEECCC
Confidence 789999862 11 11101 1134577777776 9999999987663
No 65
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.3e-09 Score=110.45 Aligned_cols=158 Identities=16% Similarity=0.247 Sum_probs=101.3
Q ss_pred ccEEEeCCcchhHHHhc-CCCCCC-eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe
Q 010971 158 GFYMLQSASSFLPVMAL-APQEKE-RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN 235 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L-~~~~g~-~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~ 235 (496)
+.|+....+-.|+-.++ ...... +|||+|||+|..++.++...++ ..|+|+|+|+..++.++.|+.++|+.++.++.
T Consensus 88 ~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 88 GVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred CceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 44544444444443322 222222 7999999999999999887654 69999999999999999999999987666655
Q ss_pred cCCCCCccccCCCCcCEEEECCCCCCCC-------cccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 010971 236 YDGNELPKVLGLNTVDRVLLDAPCSGTG-------VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VLlDaPCSg~G-------~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L 308 (496)
.|... ... +.||+|+++||+=-.- +++.+|....--.. .-....++++..+...+ +|||.+
T Consensus 167 ~dlf~--~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~----dGl~~~~~i~~~a~~~l----~~~g~l 234 (280)
T COG2890 167 SDLFE--PLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGG----DGLEVYRRILGEAPDIL----KPGGVL 234 (280)
T ss_pred eeccc--ccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCc----cHHHHHHHHHHhhHHHc----CCCcEE
Confidence 55432 222 5899999999985443 12223322221111 12235677888888886 998877
Q ss_pred EEEeCCCCCcCCHHHHHHHHHhCC
Q 010971 309 VYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 309 VYSTCSi~~eENE~vV~~~L~~~~ 332 (496)
+. -+++. ..+. |..++.+.+
T Consensus 235 ~l-e~g~~--q~~~-v~~~~~~~~ 254 (280)
T COG2890 235 IL-EIGLT--QGEA-VKALFEDTG 254 (280)
T ss_pred EE-EECCC--cHHH-HHHHHHhcC
Confidence 64 34432 3344 444444544
No 66
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.12 E-value=3.9e-10 Score=118.57 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=70.0
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
...++.+|||+|||+|..|+.+|.. ...|+|+|+++..++.+++|++.+|+.++.+.+.|+..+.... ...||.|+
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~vi 305 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-MSAPELVL 305 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc-CCCCCEEE
Confidence 3346789999999999999988853 3689999999999999999999999999999999987653211 14699999
Q ss_pred ECCCCCCC
Q 010971 255 LDAPCSGT 262 (496)
Q Consensus 255 lDaPCSg~ 262 (496)
+|||..|.
T Consensus 306 ~DPPr~G~ 313 (374)
T TIGR02085 306 VNPPRRGI 313 (374)
T ss_pred ECCCCCCC
Confidence 99997654
No 67
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.11 E-value=5.4e-10 Score=110.30 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=92.7
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcccc--
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL-- 245 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~-- 245 (496)
+...++...+..+|||+|+|+|.-++.|+..++..|.|+++|+++.+++.+++|++++|+.+ +.++.+|+......+
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~ 138 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN 138 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh
Confidence 33444555667899999999999999999998888999999999999999999999999964 899999987642211
Q ss_pred --CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 246 --GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 246 --~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
..+.||.|++|++ + .....++..++.++ +|||.|+...+-+
T Consensus 139 ~~~~~~fD~VfiDa~-------------k------------~~y~~~~~~~~~ll----~~GG~ii~dn~l~ 181 (234)
T PLN02781 139 NDPKPEFDFAFVDAD-------------K------------PNYVHFHEQLLKLV----KVGGIIAFDNTLW 181 (234)
T ss_pred CCCCCCCCEEEECCC-------------H------------HHHHHHHHHHHHhc----CCCeEEEEEcCCc
Confidence 1258999999986 0 12234567777776 9999999766543
No 68
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.11 E-value=8.7e-10 Score=114.67 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=96.2
Q ss_pred CCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc
Q 010971 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~ 243 (496)
|.+|.+....|......+|||+|||+|..+..++...+ ...|+++|+++..++.++.|+.+.++. ..+...|+...
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-- 257 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-- 257 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc--
Confidence 44555555556555566999999999999999998754 368999999999999999999999885 35566776542
Q ss_pred ccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC
Q 010971 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (496)
Q Consensus 244 ~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE 319 (496)
. .+.||.|+++||- ..|.- .+ ...-.+++..|.+.| +|||.|++.+.+..+.+
T Consensus 258 -~-~~~fDlIvsNPPF-H~g~~---------~~-------~~~~~~~i~~a~~~L----kpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 258 -I-KGRFDMIISNPPF-HDGIQ---------TS-------LDAAQTLIRGAVRHL----NSGGELRIVANAFLPYP 310 (342)
T ss_pred -c-CCCccEEEECCCc-cCCcc---------cc-------HHHHHHHHHHHHHhc----CcCCEEEEEEeCCCChH
Confidence 1 3689999999993 11110 00 112255788888886 99999999999988755
No 69
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.10 E-value=7.2e-10 Score=114.03 Aligned_cols=121 Identities=24% Similarity=0.328 Sum_probs=96.5
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-CCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~~~~~~~~~ 249 (496)
|.+..+++|+.|||=+||+||..+.. .+|+ ..++++|++..++.-++.|++.+|+....+... |++.+| ++...
T Consensus 190 VNLa~v~~G~~vlDPFcGTGgiLiEa-gl~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--l~~~~ 264 (347)
T COG1041 190 VNLARVKRGELVLDPFCGTGGILIEA-GLMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--LRDNS 264 (347)
T ss_pred HHHhccccCCEeecCcCCccHHHHhh-hhcC--ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC--CCCCc
Confidence 44456899999999999999987654 4553 689999999999999999999999998766655 999998 54457
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
||.|.+|||+--+-.+. ...+..+..+.|..+.+.| ++||++||.+-
T Consensus 265 vdaIatDPPYGrst~~~-------------~~~l~~Ly~~~le~~~evL----k~gG~~vf~~p 311 (347)
T COG1041 265 VDAIATDPPYGRSTKIK-------------GEGLDELYEEALESASEVL----KPGGRIVFAAP 311 (347)
T ss_pred cceEEecCCCCcccccc-------------cccHHHHHHHHHHHHHHHh----hcCcEEEEecC
Confidence 99999999974322111 1126677788899998886 99999999765
No 70
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.09 E-value=8.9e-10 Score=113.63 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=73.3
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
..++++++++|||+|||+|..+..++..++..|.|+++|+++..++.+++++..+|+.++.++.+|+....... ..||
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~--~~fD 151 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF--APYD 151 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc--CCcc
Confidence 45668899999999999999999999988766789999999999999999999999999999999987654322 5799
Q ss_pred EEEECC
Q 010971 252 RVLLDA 257 (496)
Q Consensus 252 ~VLlDa 257 (496)
+|+++.
T Consensus 152 ~Ii~~~ 157 (322)
T PRK13943 152 VIFVTV 157 (322)
T ss_pred EEEECC
Confidence 999974
No 71
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.08 E-value=9.1e-10 Score=115.70 Aligned_cols=123 Identities=18% Similarity=0.346 Sum_probs=98.5
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
.+.+..+..|||+|||+|..++++|...+ ...++|+|+++.++..+..++.+.|+.|+.++++|+..+...++.+.||.
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeE
Confidence 34455678999999999999999999975 47999999999999999999999999999999999987654556689999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|++.-|+ | |.+... .++ .+..+|..+.++| +|||.+...|.+..
T Consensus 196 I~lnFPd---------P---W~KkrH--RRl--v~~~fL~e~~RvL----kpGG~l~l~TD~~~ 239 (390)
T PRK14121 196 IFVHFPV---------P---WDKKPH--RRV--ISEDFLNEALRVL----KPGGTLELRTDSEL 239 (390)
T ss_pred EEEeCCC---------C---ccccch--hhc--cHHHHHHHHHHHc----CCCcEEEEEEECHH
Confidence 9997663 2 222111 122 2567788888876 99999999998753
No 72
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.08 E-value=7.4e-10 Score=116.79 Aligned_cols=112 Identities=27% Similarity=0.335 Sum_probs=86.2
Q ss_pred hHHHhcCCC-CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQ-EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~-~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
+++.++... ++.+|||++||+|..++.++...+ ...|+++|+++..++.++.|++.+|+.++.+.+.|+..+... .
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~ 123 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--E 123 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--c
Confidence 333444333 457999999999999999988764 358999999999999999999999999888999998765321 2
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
..||+|++||| |++ ...|..|+..+ ++||.|.+ ||+
T Consensus 124 ~~fD~V~lDP~--Gs~------------------------~~~l~~al~~~----~~~gilyv-SAt 159 (382)
T PRK04338 124 RKFDVVDIDPF--GSP------------------------APFLDSAIRSV----KRGGLLCV-TAT 159 (382)
T ss_pred CCCCEEEECCC--CCc------------------------HHHHHHHHHHh----cCCCEEEE-Eec
Confidence 57999999998 443 23577777776 88776654 454
No 73
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.08 E-value=1.3e-09 Score=105.79 Aligned_cols=110 Identities=23% Similarity=0.314 Sum_probs=77.6
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc------cccCCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~------~~~~~~~ 249 (496)
..+|.+|||+|||||+.+..+++.++..+.|+|+|+++- .++.++.++++|+...+ ..+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 367899999999999999999999877789999999981 23457889999998753 1133478
Q ss_pred cCEEEECC-CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 250 VDRVLLDA-PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 250 fD~VLlDa-PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
||.|++|+ |.. +| +|. .+......+...+|..+.++| +|||++|..+
T Consensus 118 ~D~V~S~~~~~~-~g----~~~-------~d~~~~~~~~~~~L~~~~~~L----kpGG~~vi~~ 165 (209)
T PRK11188 118 VQVVMSDMAPNM-SG----TPA-------VDIPRAMYLVELALDMCRDVL----APGGSFVVKV 165 (209)
T ss_pred CCEEecCCCCcc-CC----ChH-------HHHHHHHHHHHHHHHHHHHHc----CCCCEEEEEE
Confidence 99999985 321 22 111 111111222345777777775 9999998753
No 74
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.07 E-value=3.6e-10 Score=109.06 Aligned_cols=101 Identities=30% Similarity=0.372 Sum_probs=75.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.++|+.||||+||-|.+++.+|... ....|+|+|+++..++.|++|++.+++.+ +.++++|++.+.. ...||+|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---ccccCEEE
Confidence 5789999999999999999998753 34689999999999999999999999987 7899999998865 37899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
++-|-+. ...|..|+.++ ++||.+.|
T Consensus 175 m~lp~~~--------------------------~~fl~~~~~~~----~~~g~ihy 200 (200)
T PF02475_consen 175 MNLPESS--------------------------LEFLDAALSLL----KEGGIIHY 200 (200)
T ss_dssp E--TSSG--------------------------GGGHHHHHHHE----EEEEEEEE
T ss_pred ECChHHH--------------------------HHHHHHHHHHh----cCCcEEEC
Confidence 9988332 12477788886 99999887
No 75
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.06 E-value=2.4e-09 Score=101.49 Aligned_cols=122 Identities=21% Similarity=0.284 Sum_probs=85.0
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCc--------EEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTG--------LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL 241 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--------~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~ 241 (496)
+.+..+++|+.|||-+||+|+..+..+.+..+.. .+++.|+++..+..++.|++..|+.. +.+.+.|+..+
T Consensus 21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL 100 (179)
T ss_dssp HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG
T ss_pred HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc
Confidence 4555688999999999999999887766655432 38999999999999999999999975 88889999998
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+ +..+.||.|++|||. | .....-..+..+...++..+.+.+ ++ .+|+.|++
T Consensus 101 ~--~~~~~~d~IvtnPPy---G-----------~r~~~~~~~~~ly~~~~~~~~~~l----~~--~~v~l~~~ 151 (179)
T PF01170_consen 101 P--LPDGSVDAIVTNPPY---G-----------RRLGSKKDLEKLYRQFLRELKRVL----KP--RAVFLTTS 151 (179)
T ss_dssp G--GTTSBSCEEEEE--S---T-----------TSHCHHHHHHHHHHHHHHHHHCHS----TT--CEEEEEES
T ss_pred c--cccCCCCEEEECcch---h-----------hhccCHHHHHHHHHHHHHHHHHHC----CC--CEEEEEEC
Confidence 8 334789999999994 1 222233445677788888888765 66 45554444
No 76
>PLN02476 O-methyltransferase
Probab=99.06 E-value=8.4e-10 Score=111.41 Aligned_cols=121 Identities=21% Similarity=0.220 Sum_probs=96.9
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~ 245 (496)
..+...++......+|||+|++.|..|+++|..++..|.|+++|.++.+++.+++|+++.|+. +|.++.+|+......+
T Consensus 107 g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l 186 (278)
T PLN02476 107 AQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSM 186 (278)
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence 445555566667889999999999999999999988899999999999999999999999997 5999999987642212
Q ss_pred ----CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 246 ----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 246 ----~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
..+.||.||+|++ + ......+..++++| +|||.||.-.+-++
T Consensus 187 ~~~~~~~~FD~VFIDa~-------------K------------~~Y~~y~e~~l~lL----~~GGvIV~DNvL~~ 232 (278)
T PLN02476 187 IQNGEGSSYDFAFVDAD-------------K------------RMYQDYFELLLQLV----RVGGVIVMDNVLWH 232 (278)
T ss_pred HhcccCCCCCEEEECCC-------------H------------HHHHHHHHHHHHhc----CCCcEEEEecCccC
Confidence 1257999999997 0 22345677777776 99999998766544
No 77
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.06 E-value=6.1e-10 Score=106.52 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=88.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-cCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-~~~~~fD~VLl 255 (496)
..+.+|||+|||+|..+..+|...+ .+.|+++|++..++..+..++++.|+.|+.+++.|+..++.. +..+.||.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 3567999999999999999998865 478999999999999999999999999999999999765422 23358999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+.| +|..+-...... + .+..+|..+.+.| +|||.|.++|
T Consensus 94 ~~p---------dpw~k~~h~~~r---~--~~~~~l~~~~r~L----kpgG~l~~~t 132 (194)
T TIGR00091 94 NFP---------DPWPKKRHNKRR---I--TQPHFLKEYANVL----KKGGVIHFKT 132 (194)
T ss_pred ECC---------CcCCCCCccccc---c--CCHHHHHHHHHHh----CCCCEEEEEe
Confidence 876 121110000000 1 1345677777776 9999998876
No 78
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.04 E-value=2.6e-09 Score=112.35 Aligned_cols=124 Identities=9% Similarity=0.002 Sum_probs=93.2
Q ss_pred CCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEecCCCC
Q 010971 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNE 240 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~---nv~v~~~D~~~ 240 (496)
|.++.+....|....+.+|||+|||+|..++.++...+ ...|+++|+|+..++.+++|++.++.. ++.+...|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 55566666666655567999999999999999998864 479999999999999999999988753 67888888754
Q ss_pred CccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 241 ~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.. ...+||.|+++||.---..+ +. ..-.+++..|.+.| +|||.|+...
T Consensus 293 ~~---~~~~fDlIlsNPPfh~~~~~----------~~-------~ia~~l~~~a~~~L----kpGG~L~iV~ 340 (378)
T PRK15001 293 GV---EPFRFNAVLCNPPFHQQHAL----------TD-------NVAWEMFHHARRCL----KINGELYIVA 340 (378)
T ss_pred cC---CCCCEEEEEECcCcccCccC----------CH-------HHHHHHHHHHHHhc----ccCCEEEEEE
Confidence 21 22579999999996421111 11 11235788888876 9999998875
No 79
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.04 E-value=3.5e-09 Score=115.53 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=99.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
++.+|||+|||+|..++.++..+++ ..|+|+|+|+..++.++.|+.++|+. ++.++.+|.... ...+.||+|++|
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~---~~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN---IEKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---CcCCCccEEEEC
Confidence 4578999999999999999887654 79999999999999999999999986 488888886532 223579999999
Q ss_pred CCCCCCCccc--------CCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 010971 257 APCSGTGVIS--------KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 257 aPCSg~G~i~--------r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L 328 (496)
||+....-.. ..|...+.-..+. ....+.|+..+.+.| +|||.|++. +. .. ..+.|..++
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dG----l~~~~~il~~a~~~L----~~gG~l~lE-ig--~~-q~~~v~~~~ 281 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDG----LQAYFIIAENAKQFL----KPNGKIILE-IG--FK-QEEAVTQIF 281 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccH----HHHHHHHHHHHHHhc----cCCCEEEEE-EC--Cc-hHHHHHHHH
Confidence 9998765321 1233222211112 234567888888876 999999764 33 22 334445555
Q ss_pred HhCCcE
Q 010971 329 KKRDVK 334 (496)
Q Consensus 329 ~~~~~~ 334 (496)
.+.++.
T Consensus 282 ~~~g~~ 287 (506)
T PRK01544 282 LDHGYN 287 (506)
T ss_pred HhcCCC
Confidence 555544
No 80
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.7e-08 Score=102.21 Aligned_cols=129 Identities=22% Similarity=0.228 Sum_probs=100.2
Q ss_pred eCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc
Q 010971 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (496)
Q Consensus 163 Qd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~ 242 (496)
=|.+|.+....|....+.+|||+|||-|-.++.++...+ ...|+.+|+|...++.++.|++.+++++..+...|...-
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~- 220 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP- 220 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-
Confidence 367788888888888788999999999999999999876 579999999999999999999999999865555554332
Q ss_pred cccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 243 ~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
.. ++||.|+++||-- .| ......+-.+|+..|.+.| ++||.|....-...+
T Consensus 221 -v~--~kfd~IisNPPfh-~G----------------~~v~~~~~~~~i~~A~~~L----~~gGeL~iVan~~l~ 271 (300)
T COG2813 221 -VE--GKFDLIISNPPFH-AG----------------KAVVHSLAQEIIAAAARHL----KPGGELWIVANRHLP 271 (300)
T ss_pred -cc--ccccEEEeCCCcc-CC----------------cchhHHHHHHHHHHHHHhh----ccCCEEEEEEcCCCC
Confidence 22 4899999999932 11 1112223356899999987 999999776554443
No 81
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.04 E-value=1.9e-09 Score=103.98 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=66.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..++.++.. ..+.|+++|+++..++.+++|++.+|+.++.+++.|+..+.... ...||+|++|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~-~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP-GTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc-CCCceEEEEC
Confidence 56889999999999999854443 24699999999999999999999999989999999986542211 2469999999
Q ss_pred CCC
Q 010971 257 APC 259 (496)
Q Consensus 257 aPC 259 (496)
||.
T Consensus 129 PPy 131 (199)
T PRK10909 129 PPF 131 (199)
T ss_pred CCC
Confidence 994
No 82
>PLN02244 tocopherol O-methyltransferase
Probab=99.03 E-value=2.1e-09 Score=111.65 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=85.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.++.+|||+|||+|+.+.+++... .+.|+++|+++..++.+++++...|+. ++.+..+|+..++ +..+.||.|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP--FEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC--CCCCCccEEEE
Confidence 678999999999999999999876 368999999999999999999998885 5999999998876 34578999986
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
-- ++..-++ ..++|.++.++| +|||+|+.+++.
T Consensus 193 ~~------~~~h~~d----------------~~~~l~e~~rvL----kpGG~lvi~~~~ 225 (340)
T PLN02244 193 ME------SGEHMPD----------------KRKFVQELARVA----APGGRIIIVTWC 225 (340)
T ss_pred CC------chhccCC----------------HHHHHHHHHHHc----CCCcEEEEEEec
Confidence 21 1111111 134577777775 999999998764
No 83
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.03 E-value=1e-09 Score=114.98 Aligned_cols=81 Identities=16% Similarity=0.306 Sum_probs=67.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC------------
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG------------ 246 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~------------ 246 (496)
+.+|||+|||+|+.|+.++... ..|+|+|+++..++.+++|+..+|+.|+.+...|+..+...+.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888753 5899999999999999999999999999999999876422110
Q ss_pred --CCCcCEEEECCCCCCC
Q 010971 247 --LNTVDRVLLDAPCSGT 262 (496)
Q Consensus 247 --~~~fD~VLlDaPCSg~ 262 (496)
...||+|++|||-+|.
T Consensus 284 ~~~~~~D~v~lDPPR~G~ 301 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAGL 301 (362)
T ss_pred ccCCCCCEEEECCCCCCC
Confidence 1258999999997654
No 84
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=5.2e-09 Score=106.29 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=103.1
Q ss_pred CcchhHHHhcC--CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC
Q 010971 165 ASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL 241 (496)
Q Consensus 165 ~sS~l~v~~L~--~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~ 241 (496)
+...+...+|. .++|.+|||+|||+|-.++.++.+ +...|+|+|+++..++.+++|+.++|+.. +.....+....
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 55566666664 568999999999999988765554 55789999999999999999999999985 33333333333
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
+ ..+.||+|+++ -|+..-..|...+...+ +|||+++.|- |.. +-+
T Consensus 225 ~---~~~~~DvIVAN-------------------------ILA~vl~~La~~~~~~l----kpgg~lIlSG--Il~-~q~ 269 (300)
T COG2264 225 P---ENGPFDVIVAN-------------------------ILAEVLVELAPDIKRLL----KPGGRLILSG--ILE-DQA 269 (300)
T ss_pred c---ccCcccEEEeh-------------------------hhHHHHHHHHHHHHHHc----CCCceEEEEe--ehH-hHH
Confidence 2 22589999874 14555556666666665 9999999987 554 447
Q ss_pred HHHHHHHHhCCcEEeecC
Q 010971 322 AVIDYALKKRDVKLVPCG 339 (496)
Q Consensus 322 ~vV~~~L~~~~~~lv~~~ 339 (496)
+.|..++...+++++++.
T Consensus 270 ~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 270 ESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHHHHHhCCCeEeEEE
Confidence 778888888888888763
No 85
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.00 E-value=2.1e-09 Score=112.34 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=67.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---------C---
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---------G--- 246 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---------~--- 246 (496)
+.+|||+|||+|..|+.++... ..|+|+|+++..++.+++|+..+|+.|+.++..|+..+.... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888764 489999999999999999999999999999999987643210 0
Q ss_pred --CCCcCEEEECCCCCCCC
Q 010971 247 --LNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 247 --~~~fD~VLlDaPCSg~G 263 (496)
...||.|++|||-+|.+
T Consensus 275 ~~~~~~d~v~lDPPR~G~~ 293 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGLD 293 (353)
T ss_pred cccCCCCEEEECCCCCCCc
Confidence 02389999999966543
No 86
>PRK08317 hypothetical protein; Provisional
Probab=98.98 E-value=1e-08 Score=98.84 Aligned_cols=115 Identities=18% Similarity=0.214 Sum_probs=86.3
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..++..++..+.++++|+++.++..++++... ...++.+...|...++ +..+.|
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~--~~~~~~ 88 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLP--FPDGSF 88 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCC--CCCCCc
Confidence 3456778899999999999999999999885567999999999999999888433 2346888888887665 234789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|.|+++.. +. .+ .....++..+.++| +|||+|+++++.
T Consensus 89 D~v~~~~~------~~------------~~----~~~~~~l~~~~~~L----~~gG~l~~~~~~ 126 (241)
T PRK08317 89 DAVRSDRV------LQ------------HL----EDPARALAEIARVL----RPGGRVVVLDTD 126 (241)
T ss_pred eEEEEech------hh------------cc----CCHHHHHHHHHHHh----cCCcEEEEEecC
Confidence 99997421 10 00 11234577777776 999999998875
No 87
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.98 E-value=4.7e-09 Score=100.72 Aligned_cols=114 Identities=18% Similarity=0.118 Sum_probs=84.4
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
.....+.+.++.+|||+|||+|..+.+|++. ...|+|+|+|+..++.+++++...++.++.+...|...++. ..
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~ 94 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---DG 94 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---CC
Confidence 4455566677899999999999999999875 25899999999999999999999999888888888876542 25
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.||.|++-.. +. ..++. ....++..+.++| +|||++++.+
T Consensus 95 ~fD~I~~~~~------~~-------~~~~~-------~~~~~l~~i~~~L----kpgG~~~~~~ 134 (197)
T PRK11207 95 EYDFILSTVV------LM-------FLEAK-------TIPGLIANMQRCT----KPGGYNLIVA 134 (197)
T ss_pred CcCEEEEecc------hh-------hCCHH-------HHHHHHHHHHHHc----CCCcEEEEEE
Confidence 7999986221 10 01111 1234667777765 9999976543
No 88
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.98 E-value=8.9e-09 Score=104.60 Aligned_cols=134 Identities=16% Similarity=0.123 Sum_probs=91.5
Q ss_pred cchhHHHhcC--CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCc
Q 010971 166 SSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELP 242 (496)
Q Consensus 166 sS~l~v~~L~--~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~ 242 (496)
...+...+|. ..+|.+|||+|||+|..+..++.+ +.+.|+|+|+++.+++.+++|+..+++.+ +.+...|.....
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~ 222 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPI 222 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccccc
Confidence 3344433333 457899999999999988776654 34689999999999999999999999865 555555532221
Q ss_pred cccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHH
Q 010971 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322 (496)
Q Consensus 243 ~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~ 322 (496)
.+.||+|+++..+ .....++..+.++| +|||+|+.|... . +...
T Consensus 223 ----~~~fDlVvan~~~-------------------------~~l~~ll~~~~~~L----kpgG~li~sgi~--~-~~~~ 266 (288)
T TIGR00406 223 ----EGKADVIVANILA-------------------------EVIKELYPQFSRLV----KPGGWLILSGIL--E-TQAQ 266 (288)
T ss_pred ----CCCceEEEEecCH-------------------------HHHHHHHHHHHHHc----CCCcEEEEEeCc--H-hHHH
Confidence 3689999986420 11134667777775 999999998753 2 3334
Q ss_pred HHHHHHHhCCcEEeec
Q 010971 323 VIDYALKKRDVKLVPC 338 (496)
Q Consensus 323 vV~~~L~~~~~~lv~~ 338 (496)
.|..++++. ++++..
T Consensus 267 ~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 267 SVCDAYEQG-FTVVEI 281 (288)
T ss_pred HHHHHHHcc-CceeeE
Confidence 444455554 665543
No 89
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.97 E-value=3.5e-09 Score=109.49 Aligned_cols=122 Identities=25% Similarity=0.295 Sum_probs=95.1
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+|++||||+||-|.+|+.+|..-. ..|+|+|+|+..++.|++|++.+++.+ +..+++|++.+.... +.||+|+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--~~aDrIi 261 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--GVADRII 261 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--ccCCEEE
Confidence 45799999999999999999988743 349999999999999999999999998 889999999987544 7899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC---CHHHHHHHHHhC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE---NEAVIDYALKKR 331 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE---NE~vV~~~L~~~ 331 (496)
+.-|-+ +.+.|..|+.++ ++||.|.|-+-+-..+. ....+..+..+.
T Consensus 262 m~~p~~--------------------------a~~fl~~A~~~~----k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 262 MGLPKS--------------------------AHEFLPLALELL----KDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred eCCCCc--------------------------chhhHHHHHHHh----hcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 987721 234688888987 89999987654432221 334444444444
No 90
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.97 E-value=8e-09 Score=102.70 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=82.0
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++...|+. ++.++++|+..++.. ..+.||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~-~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH-LETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-cCCCCCEEEe
Confidence 45789999999999999999875 268999999999999999999999974 688999998776432 2378999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.... .+ + .-...+|..+.++| +|||+|+....+
T Consensus 119 ~~vl------------~~---------~-~~~~~~l~~~~~~L----kpgG~l~i~~~n 151 (255)
T PRK11036 119 HAVL------------EW---------V-ADPKSVLQTLWSVL----RPGGALSLMFYN 151 (255)
T ss_pred hhHH------------Hh---------h-CCHHHHHHHHHHHc----CCCeEEEEEEEC
Confidence 4321 00 0 01134677777776 999999865444
No 91
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.95 E-value=1.9e-08 Score=99.97 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=84.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+.++.+|||+|||+|..+..++.. + .+.|+|+|+|+.+++.+++|+..+++. .+.+...| ..||+|+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~----------~~fD~Vv 184 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD----------LKADVIV 184 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC----------CCcCEEE
Confidence 468999999999999887765543 3 357999999999999999999999884 34433222 2699999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~ 334 (496)
++.. ......++..+.++| +|||+|+.|.... +..+-+...+.+.+++
T Consensus 185 ani~-------------------------~~~~~~l~~~~~~~L----kpgG~lilsgi~~---~~~~~v~~~l~~~Gf~ 232 (250)
T PRK00517 185 ANIL-------------------------ANPLLELAPDLARLL----KPGGRLILSGILE---EQADEVLEAYEEAGFT 232 (250)
T ss_pred EcCc-------------------------HHHHHHHHHHHHHhc----CCCcEEEEEECcH---hhHHHHHHHHHHCCCE
Confidence 8531 111234567777775 9999999986542 3444555566777777
Q ss_pred Eeec
Q 010971 335 LVPC 338 (496)
Q Consensus 335 lv~~ 338 (496)
++..
T Consensus 233 ~~~~ 236 (250)
T PRK00517 233 LDEV 236 (250)
T ss_pred EEEE
Confidence 6653
No 92
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.94 E-value=2.2e-09 Score=102.33 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=60.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcccc--CCCCcCEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~--~~~~fD~V 253 (496)
-+|.+|||+|||+|..++..+. ++...|+.+|.++..++.+++|++.+++.+ +.++..|+..+-... ....||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALS--RGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALS--RGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence 3799999999999999986544 356799999999999999999999999987 888888865442212 34789999
Q ss_pred EECCCCC
Q 010971 254 LLDAPCS 260 (496)
Q Consensus 254 LlDaPCS 260 (496)
++|||+-
T Consensus 119 flDPPY~ 125 (183)
T PF03602_consen 119 FLDPPYA 125 (183)
T ss_dssp EE--STT
T ss_pred EECCCcc
Confidence 9999953
No 93
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.94 E-value=5.5e-09 Score=101.98 Aligned_cols=121 Identities=19% Similarity=0.217 Sum_probs=97.6
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEe-cCCCCCccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCN-YDGNELPKV 244 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~-~D~~~~~~~ 244 (496)
-.+..+++......+||++|++.|-.|+.||..++..|+|+++|+++++.+.+++|+++.|+.+ |+++. +|+.+.-..
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 3455566666778899999999999999999999877999999999999999999999999987 67777 477655332
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
...+.||.||+|+- ...+.+.|..++++| +|||.||.-.-.+.
T Consensus 128 ~~~~~fDliFIDad-------------------------K~~yp~~le~~~~lL----r~GGliv~DNvl~~ 170 (219)
T COG4122 128 LLDGSFDLVFIDAD-------------------------KADYPEYLERALPLL----RPGGLIVADNVLFG 170 (219)
T ss_pred ccCCCccEEEEeCC-------------------------hhhCHHHHHHHHHHh----CCCcEEEEeecccC
Confidence 23489999999984 123455688888886 99999988766665
No 94
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.92 E-value=1.6e-08 Score=100.37 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=84.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+.++.+|||+|||+|..+..++..+ .+.+.|+++|+|+.+++.+++++..++.. ++.++.+|+..++ . ..||.|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--~--~~~D~v 129 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--I--ENASMV 129 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC--C--CCCCEE
Confidence 3578999999999999998888764 34579999999999999999999998876 5889999988765 2 458988
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHH-HHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCS-YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~-~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
++.-. +..+. ..+..++....+.| +|||.|+.++..
T Consensus 130 v~~~~---------------------l~~l~~~~~~~~l~~i~~~L----kpGG~l~l~e~~ 166 (247)
T PRK15451 130 VLNFT---------------------LQFLEPSERQALLDKIYQGL----NPGGALVLSEKF 166 (247)
T ss_pred ehhhH---------------------HHhCCHHHHHHHHHHHHHhc----CCCCEEEEEEec
Confidence 75211 11111 11345777777776 999999998743
No 95
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.91 E-value=1.5e-08 Score=82.63 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=80.9
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCC
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCS 260 (496)
+|||+|||+|..+..++. .....++++|+++..+..+++.....+..++.+...|...... .....||+|+++.||.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcccee
Confidence 589999999999988877 3457999999999999988876555566678888888877653 1236899999999976
Q ss_pred CCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 261 g~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.. ...+..++..+...+ +|||.++++
T Consensus 78 ~~---------------------~~~~~~~l~~~~~~l----~~~g~~~~~ 103 (107)
T cd02440 78 HL---------------------VEDLARFLEEARRLL----KPGGVLVLT 103 (107)
T ss_pred eh---------------------hhHHHHHHHHHHHHc----CCCCEEEEE
Confidence 53 234456777777776 999999876
No 96
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.90 E-value=4.6e-09 Score=110.44 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=83.3
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
-+|||++||+|.-++.++...++...|++||+++..++.+++|++.+++.++.+++.|+..+.... ...||+|.+||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~-~~~fDvIdlDPf- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR-NRKFHVIDIDPF- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh-CCCCCEEEeCCC-
Confidence 489999999999999988875555689999999999999999999999999999999987764322 257999999997
Q ss_pred CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 260 Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+. ...|..|++.+ ++||.| |.|||
T Consensus 124 -Gs~------------------------~~fld~al~~~----~~~glL-~vTaT 148 (374)
T TIGR00308 124 -GTP------------------------APFVDSAIQAS----AERGLL-LVTAT 148 (374)
T ss_pred -CCc------------------------HHHHHHHHHhc----ccCCEE-EEEec
Confidence 321 13588888887 888766 44544
No 97
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.89 E-value=9.7e-09 Score=97.72 Aligned_cols=82 Identities=27% Similarity=0.317 Sum_probs=66.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCC-CCcCEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL-NTVDRVL 254 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~-~~fD~VL 254 (496)
-+|.+|||++||+|+.++..+.. +...++.+|.|...+..+++|++.+++. ++.++..|+..+...... +.||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 47999999999999999866554 5679999999999999999999999975 478888888754222221 2499999
Q ss_pred ECCCCC
Q 010971 255 LDAPCS 260 (496)
Q Consensus 255 lDaPCS 260 (496)
+|||+-
T Consensus 120 lDPPy~ 125 (187)
T COG0742 120 LDPPYA 125 (187)
T ss_pred eCCCCc
Confidence 999953
No 98
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.88 E-value=1e-08 Score=98.15 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=66.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcccc-C-CCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL-G-LNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~-~-~~~fD~VL 254 (496)
+|.+|||+|||+|..++.++.. +...|+++|.++..++.+++|++.+++. ++.+.+.|+..+.... . ...||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 5899999999999999888775 3458999999999999999999999996 5889999985542211 1 12489999
Q ss_pred ECCCCC
Q 010971 255 LDAPCS 260 (496)
Q Consensus 255 lDaPCS 260 (496)
+|||..
T Consensus 127 ~DPPy~ 132 (189)
T TIGR00095 127 LDPPFF 132 (189)
T ss_pred ECcCCC
Confidence 999964
No 99
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.88 E-value=2.5e-08 Score=95.55 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=87.0
Q ss_pred cccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE
Q 010971 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234 (496)
Q Consensus 155 ~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~ 234 (496)
|..+.|-..-. +......+.+.++.+|||+|||+|..+.++++. ...|+|+|+|+..++.+++++...|+. +.+.
T Consensus 8 ~~~~~~~~~~~-~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~ 82 (195)
T TIGR00477 8 YFHKKYGMTTT-HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTD 82 (195)
T ss_pred HHHHhhCCCCc-hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeE
Confidence 44555544433 333445666666789999999999999999874 368999999999999999999888885 6666
Q ss_pred ecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 235 NYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 235 ~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..|...++ + ...||.|++-.+... .+.. ....++..+.++| +|||+++..+
T Consensus 83 ~~d~~~~~--~-~~~fD~I~~~~~~~~-------------~~~~-------~~~~~l~~~~~~L----kpgG~lli~~ 133 (195)
T TIGR00477 83 AYDINAAA--L-NEDYDFIFSTVVFMF-------------LQAG-------RVPEIIANMQAHT----RPGGYNLIVA 133 (195)
T ss_pred eccchhcc--c-cCCCCEEEEeccccc-------------CCHH-------HHHHHHHHHHHHh----CCCcEEEEEE
Confidence 77765443 2 257999987433110 1111 1234577777776 9999966544
No 100
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.87 E-value=2.8e-08 Score=100.32 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=91.8
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~ 247 (496)
+....|.++||++|||+|||-|+.+.++|+.. ...|+++++|++.++.+++.+...|+. ++.+.-.|-+++.
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----- 135 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----- 135 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-----
Confidence 44556789999999999999999999999987 379999999999999999999999998 7999888888775
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHH-HHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY-LQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~-lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
+.||+|+. .|+ +..+.. .....+..+...| +|||.++.-|-+...
T Consensus 136 e~fDrIvS------vgm---------------fEhvg~~~~~~ff~~~~~~L----~~~G~~llh~I~~~~ 181 (283)
T COG2230 136 EPFDRIVS------VGM---------------FEHVGKENYDDFFKKVYALL----KPGGRMLLHSITGPD 181 (283)
T ss_pred cccceeee------hhh---------------HHHhCcccHHHHHHHHHhhc----CCCceEEEEEecCCC
Confidence 45999964 333 222222 1234566666665 999999887666543
No 101
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.87 E-value=3.5e-08 Score=101.95 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=80.3
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+.+|.+|||+|||+|..+..|+.. .+.|+++|+++..++.++.++...+. .++.+++.|+..++. ..+.||+|
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--~~~~FD~V 202 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--EGRKFDAV 202 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--ccCCCCEE
Confidence 3567889999999999999888763 36899999999999999988766554 468899999877763 23689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
++- +++. .+.. ...+|....++| +|||.|+.+|-
T Consensus 203 i~~------~vLe---------------Hv~d-~~~~L~~l~r~L----kPGG~liist~ 236 (322)
T PLN02396 203 LSL------EVIE---------------HVAN-PAEFCKSLSALT----IPNGATVLSTI 236 (322)
T ss_pred EEh------hHHH---------------hcCC-HHHHHHHHHHHc----CCCcEEEEEEC
Confidence 871 1221 1111 123566666665 99999999873
No 102
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.87 E-value=3.8e-09 Score=86.96 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=70.8
Q ss_pred eeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCCCC
Q 010971 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262 (496)
Q Consensus 183 LDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~ 262 (496)
||+|||+|..+..+++. +...|+++|+++..++.++++....++ .+...|+..+| +++++||.|++--
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~---~~~~~d~~~l~--~~~~sfD~v~~~~----- 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGV---SFRQGDAEDLP--FPDNSFDVVFSNS----- 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTE---EEEESBTTSSS--S-TT-EEEEEEES-----
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCc---hheeehHHhCc--ccccccccccccc-----
Confidence 89999999999999988 447999999999999999888876544 38889999886 4458999998721
Q ss_pred CcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 263 G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
+ +.+ + ..+..++.++.+.| ||||+++.
T Consensus 69 -~--------~~~-------~-~~~~~~l~e~~rvL----k~gG~l~~ 95 (95)
T PF08241_consen 69 -V--------LHH-------L-EDPEAALREIYRVL----KPGGRLVI 95 (95)
T ss_dssp -H--------GGG-------S-SHHHHHHHHHHHHE----EEEEEEEE
T ss_pred -c--------eee-------c-cCHHHHHHHHHHHc----CcCeEEeC
Confidence 1 011 1 33456788888876 99999974
No 103
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.87 E-value=1.2e-08 Score=103.00 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=81.2
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~ 247 (496)
.....++++||++|||+|||-|+.+.++|+..+ ..|+++.+|+...+.+++.+.+.|+.+ +.+...|.++++
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-----
Confidence 445567899999999999999999999999873 689999999999999999999999975 888888987765
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
..||+|+. .|++-.-+ .. ....++..+.++| +|||.++.-+++..
T Consensus 126 ~~fD~IvS------i~~~Ehvg-------~~-------~~~~~f~~~~~~L----kpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 126 GKFDRIVS------IEMFEHVG-------RK-------NYPAFFRKISRLL----KPGGRLVLQTITHR 170 (273)
T ss_dssp -S-SEEEE------ESEGGGTC-------GG-------GHHHHHHHHHHHS----ETTEEEEEEEEEE-
T ss_pred CCCCEEEE------EechhhcC-------hh-------HHHHHHHHHHHhc----CCCcEEEEEecccc
Confidence 48999975 23332211 11 1134566777765 99999987666643
No 104
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.85 E-value=5e-08 Score=94.50 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=87.0
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~ 249 (496)
+..+.+.++.+|||+|||+|..+..++...+....++++|+++..+..+++++...+.. ++.+...|+..++. ..+.
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~ 121 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--PDNS 121 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--CCCC
Confidence 44555668899999999999999999988753579999999999999999999876654 47888888877652 3368
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
||+|++.- ++..-+ + ...+|..+..+| +|||.|++++.+.
T Consensus 122 ~D~I~~~~------~l~~~~---------~-------~~~~l~~~~~~L----~~gG~li~~~~~~ 161 (239)
T PRK00216 122 FDAVTIAF------GLRNVP---------D-------IDKALREMYRVL----KPGGRLVILEFSK 161 (239)
T ss_pred ccEEEEec------ccccCC---------C-------HHHHHHHHHHhc----cCCcEEEEEEecC
Confidence 99998621 111000 0 134577777776 9999999876554
No 105
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.85 E-value=2e-08 Score=99.64 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=80.5
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.+++++ .++.+...|+..+. ....|
T Consensus 24 l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~---~~~~f 94 (258)
T PRK01683 24 LARVPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ---PPQAL 94 (258)
T ss_pred HhhCCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC---CCCCc
Confidence 4455667899999999999999999998864 479999999999999888764 45778888887653 23689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
|+|++....- |.. .+..+|..+.+.| +|||.++.++
T Consensus 95 D~v~~~~~l~------------~~~----------d~~~~l~~~~~~L----kpgG~~~~~~ 130 (258)
T PRK01683 95 DLIFANASLQ------------WLP----------DHLELFPRLVSLL----APGGVLAVQM 130 (258)
T ss_pred cEEEEccChh------------hCC----------CHHHHHHHHHHhc----CCCcEEEEEC
Confidence 9999865311 110 1234677777776 9999998863
No 106
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.85 E-value=1.2e-08 Score=100.95 Aligned_cols=117 Identities=19% Similarity=0.199 Sum_probs=83.8
Q ss_pred EeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC
Q 010971 162 LQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241 (496)
Q Consensus 162 iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~ 241 (496)
+|...+......+...++.+|||+|||+|..+.+++.. ...|+++|+|+.+++.++.+.. .+.+++.|+..+
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~ 97 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC
Confidence 56655555566666667889999999999998888763 3689999999999998877643 234677888776
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+ +..+.||.|++..+ +.|... ...+|.++.+.| +|||+|+++|-.
T Consensus 98 ~--~~~~~fD~V~s~~~------------l~~~~d----------~~~~l~~~~~~L----k~gG~l~~~~~~ 142 (251)
T PRK10258 98 P--LATATFDLAWSNLA------------VQWCGN----------LSTALRELYRVV----RPGGVVAFTTLV 142 (251)
T ss_pred c--CCCCcEEEEEECch------------hhhcCC----------HHHHHHHHHHHc----CCCeEEEEEeCC
Confidence 5 33468999987532 111111 234677777776 999999998743
No 107
>PHA03412 putative methyltransferase; Provisional
Probab=98.84 E-value=2.5e-08 Score=98.38 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=95.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~--~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.+.+|||+|||+|..++.++..|. ....|+|+|+++..+..++.|+. ++.+.+.|+...+. ...||+|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~---~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF---DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc---cCCccEEEE
Confidence 478999999999999999998764 24689999999999999998753 46788889876542 268999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE--------EEeCCCCC-cCCH--HHH
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV--------YSTCSIMV-TENE--AVI 324 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV--------YSTCSi~~-eENE--~vV 324 (496)
+||..-... .+.. .+ ..-......++..|.+++ ++|+.|+ ||-|-... +|+- .-+
T Consensus 121 NPPY~~~~~--~d~~--ar------~~g~~~~~~li~~A~~Ll----~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~ 186 (241)
T PHA03412 121 NPPFGKIKT--SDFK--GK------YTGAEFEYKVIERASQIA----RQGTFIIPQMSANFRYSGTHYFRQDESTTSSKC 186 (241)
T ss_pred CCCCCCccc--cccC--Cc------ccccHHHHHHHHHHHHHc----CCCEEEeCcccccCcccCccceeeccCcccHHH
Confidence 999876442 1110 00 001234466889999865 8887765 67776552 3332 345
Q ss_pred HHHHHhCCcEEee
Q 010971 325 DYALKKRDVKLVP 337 (496)
Q Consensus 325 ~~~L~~~~~~lv~ 337 (496)
..|++..++.+.+
T Consensus 187 ~~~~~~~~~~~~~ 199 (241)
T PHA03412 187 KKFLDETGLEMNP 199 (241)
T ss_pred HHHHHhcCeeecC
Confidence 5667666655543
No 108
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.84 E-value=7.2e-09 Score=105.65 Aligned_cols=132 Identities=21% Similarity=0.250 Sum_probs=86.5
Q ss_pred chhHHHhcC--CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc
Q 010971 167 SFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (496)
Q Consensus 167 S~l~v~~L~--~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~ 244 (496)
..+...+|. ..+|.+|||+|||+|-.++..+.+ +.+.|+|+|+++..++.+++|+..+|+.....+. .....+
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~~~~~-- 222 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LSEDLV-- 222 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CTSCTC--
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-Eecccc--
Confidence 345555543 568999999999999988755444 4578999999999999999999999998722222 222222
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHH
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV 324 (496)
...||+|+.+- ++..-..|+..... .++|||+|+.|- +..++.+.|+
T Consensus 223 --~~~~dlvvANI-------------------------~~~vL~~l~~~~~~----~l~~~G~lIlSG--Il~~~~~~v~ 269 (295)
T PF06325_consen 223 --EGKFDLVVANI-------------------------LADVLLELAPDIAS----LLKPGGYLILSG--ILEEQEDEVI 269 (295)
T ss_dssp --CS-EEEEEEES--------------------------HHHHHHHHHHCHH----HEEEEEEEEEEE--EEGGGHHHHH
T ss_pred --cccCCEEEECC-------------------------CHHHHHHHHHHHHH----hhCCCCEEEEcc--ccHHHHHHHH
Confidence 27899999742 11222233333333 459999999864 4555666666
Q ss_pred HHHHHhCCcEEeec
Q 010971 325 DYALKKRDVKLVPC 338 (496)
Q Consensus 325 ~~~L~~~~~~lv~~ 338 (496)
+.+ ++ +++++..
T Consensus 270 ~a~-~~-g~~~~~~ 281 (295)
T PF06325_consen 270 EAY-KQ-GFELVEE 281 (295)
T ss_dssp HHH-HT-TEEEEEE
T ss_pred HHH-HC-CCEEEEE
Confidence 554 55 8887654
No 109
>PLN03075 nicotianamine synthase; Provisional
Probab=98.84 E-value=3.3e-08 Score=100.58 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=83.7
Q ss_pred CCCeEeeccCCCchHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCe-EEEEecCCCCCccccCCCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIA-ALMKNTGLIYANEMKASRLKSLTANLHR-MGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA-~l~~~~g~V~A~D~s~~rl~~l~~nl~r-~g~~n-v~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+..+|+|+|||||+.|..+. +.+.+.+.++++|+++.+++.+++++.+ .|+.+ +.+..+|+....... +.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l--~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL--KEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc--CCcCEEE
Confidence 67899999999998876543 3445668999999999999999999965 88876 999999998764333 6899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+++= - + ++ ...+.++|.+..+.+ +|||+|++-+.
T Consensus 201 ~~AL-i--~-----------~d-------k~~k~~vL~~l~~~L----kPGG~Lvlr~~ 234 (296)
T PLN03075 201 LAAL-V--G-----------MD-------KEEKVKVIEHLGKHM----APGALLMLRSA 234 (296)
T ss_pred Eecc-c--c-----------cc-------cccHHHHHHHHHHhc----CCCcEEEEecc
Confidence 9731 1 0 11 122456788888876 99999998763
No 110
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.83 E-value=1.7e-08 Score=100.30 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=78.1
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..|+...+ .+.|+++|+|+..++.++++ ++.+...|+..++. .+.|
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~---~~~f 90 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP---KPDT 90 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC---CCCc
Confidence 4445667899999999999999999998874 47899999999999887652 46677889876642 3689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|.|++.... .|. ..+..+|..+.+.| +|||+++.+
T Consensus 91 D~v~~~~~l------------~~~----------~d~~~~l~~~~~~L----kpgG~l~~~ 125 (255)
T PRK14103 91 DVVVSNAAL------------QWV----------PEHADLLVRWVDEL----APGSWIAVQ 125 (255)
T ss_pred eEEEEehhh------------hhC----------CCHHHHHHHHHHhC----CCCcEEEEE
Confidence 999985541 010 11244677777776 999999875
No 111
>PHA03411 putative methyltransferase; Provisional
Probab=98.83 E-value=7.4e-08 Score=96.98 Aligned_cols=149 Identities=13% Similarity=0.024 Sum_probs=96.5
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+.+.++.+|||+|||+|..+..++...+. ..|+++|+++..++.++.++ .++.+++.|+..+.. ...||.|
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---~~kFDlI 130 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---NEKFDVV 130 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc---cCCCcEE
Confidence 34556789999999999999888776533 58999999999999888763 367788999987642 2689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE--EEEeCCC-CCcCCHHHHHHHHHh
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI--VYSTCSI-MVTENEAVIDYALKK 330 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L--VYSTCSi-~~eENE~vV~~~L~~ 330 (496)
++|||..............++-.......+. -.++|.....+ |+|+|.+ +||+--+ +..=..+-...+|+.
T Consensus 131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~--~~~~l~~v~~~----L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~ 204 (279)
T PHA03411 131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMT--LGQKFADVGYF----IVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQ 204 (279)
T ss_pred EEcCCccccCchhhhhhhhhccCcccccccc--HHHHHhhhHhe----ecCCceEEEEEeccccccccCCHHHHHHHHHh
Confidence 9999976654332222222210000000000 12344444455 4999965 4655333 333345566778888
Q ss_pred CCcEEee
Q 010971 331 RDVKLVP 337 (496)
Q Consensus 331 ~~~~lv~ 337 (496)
+++.+.+
T Consensus 205 ~g~~~~~ 211 (279)
T PHA03411 205 TGLVTYA 211 (279)
T ss_pred cCcEecC
Confidence 8888765
No 112
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.83 E-value=3e-08 Score=99.46 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=84.7
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
..+..+.+.++.+|||+|||+|+.+.+++... .+.|+++|+++..+..+++++.. ..++.+...|+...+ ++.+
T Consensus 43 ~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~--~~~~ 116 (263)
T PTZ00098 43 KILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD--FPEN 116 (263)
T ss_pred HHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC--CCCC
Confidence 33455678899999999999999999888754 36999999999999999887654 346888889987654 3347
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH-HHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS-YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~-~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.||+|++-.- +..+. .....+|..+.++| +|||+|+.+...
T Consensus 117 ~FD~V~s~~~---------------------l~h~~~~d~~~~l~~i~r~L----kPGG~lvi~d~~ 158 (263)
T PTZ00098 117 TFDMIYSRDA---------------------ILHLSYADKKKLFEKCYKWL----KPNGILLITDYC 158 (263)
T ss_pred CeEEEEEhhh---------------------HHhCCHHHHHHHHHHHHHHc----CCCcEEEEEEec
Confidence 8999987110 11111 12345788888876 999999987543
No 113
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.3e-08 Score=96.43 Aligned_cols=126 Identities=25% Similarity=0.260 Sum_probs=87.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc------cccCCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~------~~~~~~~ 249 (496)
+.+|.+|+|+||||||++..++..++..+.|+|+|+.+-.. +.+|.++..|++.-+ ..+....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 46799999999999999999999999888999999987322 356888888887532 2223345
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
+|+|++|+----+|+ ++.++. .+..|...|+++...+|+|||.+|. .++.-++++.+-+.++
T Consensus 112 ~DvV~sD~ap~~~g~----------~~~Dh~-----r~~~L~~~a~~~a~~vL~~~G~fv~---K~fqg~~~~~~l~~~~ 173 (205)
T COG0293 112 VDVVLSDMAPNTSGN----------RSVDHA-----RSMYLCELALEFALEVLKPGGSFVA---KVFQGEDFEDLLKALR 173 (205)
T ss_pred cceEEecCCCCcCCC----------ccccHH-----HHHHHHHHHHHHHHHeeCCCCeEEE---EEEeCCCHHHHHHHHH
Confidence 799999965444443 232332 2334555566665566799999985 4555566666555555
Q ss_pred h
Q 010971 330 K 330 (496)
Q Consensus 330 ~ 330 (496)
+
T Consensus 174 ~ 174 (205)
T COG0293 174 R 174 (205)
T ss_pred H
Confidence 4
No 114
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.82 E-value=1.4e-08 Score=94.91 Aligned_cols=84 Identities=29% Similarity=0.296 Sum_probs=61.4
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCC-cCEEEECC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT-VDRVLLDA 257 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~-fD~VLlDa 257 (496)
..|||+|||.||-|+++|... ..|+|+|+++.|++.++.|++-+|+. +|.++++|...+........ ||.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999999999999999874 47999999999999999999999985 69999999877644332222 89999999
Q ss_pred CCCCCCccc
Q 010971 258 PCSGTGVIS 266 (496)
Q Consensus 258 PCSg~G~i~ 266 (496)
|=-|-....
T Consensus 78 PWGGp~Y~~ 86 (163)
T PF09445_consen 78 PWGGPSYSK 86 (163)
T ss_dssp -BSSGGGGG
T ss_pred CCCCccccc
Confidence 977765554
No 115
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.82 E-value=3.6e-09 Score=102.54 Aligned_cols=109 Identities=21% Similarity=0.328 Sum_probs=86.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCC-ccccC---CCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL-PKVLG---LNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~-~~~~~---~~~fD~ 252 (496)
.-.+||++|++.|..|++||..+++.|+|+++|+++.+.+.++.++++.|+. .|.++.+|+..+ +.... .+.||.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4469999999999999999999988899999999999999999999999996 499999999764 22211 247999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
||+|+. + ..+...+..++.+| +|||.||.-.+-+
T Consensus 125 VFiDa~-------------K------------~~y~~y~~~~~~ll----~~ggvii~DN~l~ 158 (205)
T PF01596_consen 125 VFIDAD-------------K------------RNYLEYFEKALPLL----RPGGVIIADNVLW 158 (205)
T ss_dssp EEEEST-------------G------------GGHHHHHHHHHHHE----EEEEEEEEETTTG
T ss_pred EEEccc-------------c------------cchhhHHHHHhhhc----cCCeEEEEccccc
Confidence 999986 1 11234566667776 9999999876654
No 116
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=1.1e-07 Score=94.67 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=99.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCC---CccccCCCCcCEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNE---LPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~---~~~~~~~~~fD~V 253 (496)
.+..|||+|||+|..++.|+.-++ .++|+|+|+|+..++.+.+|++|+++.+ +.+.+.+... .+.....+..|.+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 356899999999999999999887 5999999999999999999999999987 6666554321 1221234789999
Q ss_pred EECCCCCCCCcc-cCCchhhccCCHHHH---HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 254 LLDAPCSGTGVI-SKDESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 254 LlDaPCSg~G~i-~r~p~~k~~~s~~~i---~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
+++||+--.--+ .-+|+++.--..-.+ .........++.-|.++| +|||.+++.+--. .+....|++++.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L----q~gg~~~le~~~~--~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML----QPGGFEQLELVER--KEHSYLVRIWMI 300 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc----ccCCeEEEEeccc--ccCcHHHHHHHH
Confidence 999997433211 124555432111111 112223334455566665 9999999976533 566678887775
Q ss_pred h
Q 010971 330 K 330 (496)
Q Consensus 330 ~ 330 (496)
.
T Consensus 301 s 301 (328)
T KOG2904|consen 301 S 301 (328)
T ss_pred h
Confidence 4
No 117
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.80 E-value=4.6e-08 Score=105.66 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=84.6
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
+..+.+.++.+|||+|||+|+.+..++... ...|+|+|+|+..+..++.+....+ .++.+...|....+ ++.+.|
T Consensus 259 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~--~~~~~f 333 (475)
T PLN02336 259 VDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT--YPDNSF 333 (475)
T ss_pred HHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC--CCCCCE
Confidence 344556789999999999999999998865 3589999999999999998876433 35888889987654 234689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
|+|++. +++-.-+ . ...+|..+.+.| +|||+|+.++-...
T Consensus 334 D~I~s~------~~l~h~~------d----------~~~~l~~~~r~L----kpgG~l~i~~~~~~ 373 (475)
T PLN02336 334 DVIYSR------DTILHIQ------D----------KPALFRSFFKWL----KPGGKVLISDYCRS 373 (475)
T ss_pred EEEEEC------CcccccC------C----------HHHHHHHHHHHc----CCCeEEEEEEeccC
Confidence 999873 2221111 1 134677777776 99999998875543
No 118
>PLN02672 methionine S-methyltransferase
Probab=98.79 E-value=3.8e-08 Score=114.69 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=105.1
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC----------------CeEEEEecCCCCCc
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----------------TNTIVCNYDGNELP 242 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~----------------~nv~v~~~D~~~~~ 242 (496)
+.+|||+|||+|..++.++...++ +.|+|+|+|+..++.++.|+.++++ .++.++++|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 468999999999999999998754 6999999999999999999998754 35889999986543
Q ss_pred cccCCCCcCEEEECCCCCCCCcccC-Cchhh--------ccC----CHHHH---HHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 243 KVLGLNTVDRVLLDAPCSGTGVISK-DESVK--------TSK----SLEDI---QKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 243 ~~~~~~~fD~VLlDaPCSg~G~i~r-~p~~k--------~~~----s~~~i---~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
... ...||+|+.+||+-..+-+.. .|+++ +.. ..... ..-....++|+..|...| +|||
T Consensus 198 ~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L----~pgG 272 (1082)
T PLN02672 198 RDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVI----KPMG 272 (1082)
T ss_pred ccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhc----cCCC
Confidence 211 126999999999876664321 22222 100 00000 223456688899998886 9999
Q ss_pred EEEEEeCCCCCcCCHHHHHHHHHhCCcEEee
Q 010971 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 307 ~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~ 337 (496)
.|++ -+.....+.|.+.++.+++++.+.
T Consensus 273 ~l~l---EiG~~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 273 IMIF---NMGGRPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred EEEE---EECccHHHHHHHHHHHHCCCCeeE
Confidence 8874 455555666665566666655443
No 119
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.77 E-value=1.2e-07 Score=92.38 Aligned_cols=141 Identities=23% Similarity=0.279 Sum_probs=95.9
Q ss_pred cchhHHHhc------CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 166 SSFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 166 sS~l~v~~L------~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
-|-|++.++ .+.+|.+||-+|||+|..-+|+++..+.+|.|+|+|.++.-.+.|...+++- +||+.+-.|++
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr 132 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDAR 132 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TT
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCC
Confidence 356666654 3678999999999999999999999998999999999999999998777764 58999999998
Q ss_pred CCcccc-CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHH-HHHHHHhhhhcCCCCcEEEEEe--CCC
Q 010971 240 ELPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQL-ILAAIDMVDANSKSGGYIVYST--CSI 315 (496)
Q Consensus 240 ~~~~~~-~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~L-L~~A~~~l~~~lkpGG~LVYST--CSi 315 (496)
...+.. --+.+|+|++|..= .-|-+| +.+|-.+| |+||+++.+- -|+
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVaQ-------------------------p~Qa~I~~~Na~~fL----k~gG~~~i~iKa~si 183 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVAQ-------------------------PDQARIAALNARHFL----KPGGHLIISIKARSI 183 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-SS-------------------------TTHHHHHHHHHHHHE----EEEEEEEEEEEHHHH
T ss_pred ChHHhhcccccccEEEecCCC-------------------------hHHHHHHHHHHHhhc----cCCcEEEEEEecCcc
Confidence 643221 12589999999761 124444 44554565 9999998774 335
Q ss_pred CC-cCCHHHHHHHHHh---CCcEEee
Q 010971 316 MV-TENEAVIDYALKK---RDVKLVP 337 (496)
Q Consensus 316 ~~-eENE~vV~~~L~~---~~~~lv~ 337 (496)
.. ...++|.+.-.++ .++++.+
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 33 4666666655443 3565544
No 120
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.76 E-value=3e-08 Score=84.44 Aligned_cols=99 Identities=18% Similarity=0.291 Sum_probs=73.3
Q ss_pred EeeccCCCchHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 182 VIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 182 VLDmcAgpGgKT~~lA~l~~--~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
|||+|||+|..+..++..+. ....++++|+|+..+..++++....++ ++.+++.|+..++.. .+.||.|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~--~~~~D~v~~---- 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS--DGKFDLVVC---- 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH--SSSEEEEEE----
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc--CCCeeEEEE----
Confidence 79999999999999999872 226899999999999999999998777 788999999998743 379999997
Q ss_pred CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 260 Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
++.. + . ..++++ +..+|.+..+++ +|||
T Consensus 74 ~~~~-~------~-~~~~~~-------~~~ll~~~~~~l----~pgG 101 (101)
T PF13649_consen 74 SGLS-L------H-HLSPEE-------LEALLRRIARLL----RPGG 101 (101)
T ss_dssp -TTG-G------G-GSSHHH-------HHHHHHHHHHTE----EEEE
T ss_pred cCCc-c------C-CCCHHH-------HHHHHHHHHHHh----CCCC
Confidence 2211 1 0 123333 356788888876 9998
No 121
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.76 E-value=2.3e-07 Score=89.85 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=89.8
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEECCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLlDaP 258 (496)
.+|||+|||+|+.+..+++..+ ...|+++|+|+..+..++.++...|+. ++.+...|....+. .+.||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~~-- 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFGF-- 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeehH--
Confidence 3799999999999999998874 368999999999999999999999886 47888888755432 2579999851
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC---CCcC---------CHHHHHH
Q 010971 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI---MVTE---------NEAVIDY 326 (496)
Q Consensus 259 CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi---~~eE---------NE~vV~~ 326 (496)
++ +... .....+|..+.++| +|||+++.++... .+.+ ...-...
T Consensus 75 ----~~---------------l~~~-~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 130 (224)
T smart00828 75 ----EV---------------IHHI-KDKMDLFSNISRHL----KDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAE 130 (224)
T ss_pred ----HH---------------HHhC-CCHHHHHHHHHHHc----CCCCEEEEEEcccccCccccccccccccCCHHHHHH
Confidence 11 1111 11245677777775 9999999876421 1111 1233445
Q ss_pred HHHhCCcEEeec
Q 010971 327 ALKKRDVKLVPC 338 (496)
Q Consensus 327 ~L~~~~~~lv~~ 338 (496)
++...++.++..
T Consensus 131 ~l~~~Gf~~~~~ 142 (224)
T smart00828 131 LLARNNLRVVEG 142 (224)
T ss_pred HHHHCCCeEEEe
Confidence 566677776653
No 122
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.76 E-value=1.9e-07 Score=96.42 Aligned_cols=113 Identities=20% Similarity=0.224 Sum_probs=80.7
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~f 250 (496)
..+.+..|.+|||+|||+|..+..++.. +...|+++|.|+..+.......+..+. .++.+...|+..++. .+.|
T Consensus 116 ~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---~~~F 190 (322)
T PRK15068 116 PHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---LKAF 190 (322)
T ss_pred HhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---cCCc
Confidence 3456678899999999999999988876 235799999999887655544444442 468888899888764 3789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|.|++ .|++-+.+ ++ ..+|..+.+.| +|||.||.+|-.+
T Consensus 191 D~V~s------~~vl~H~~------dp----------~~~L~~l~~~L----kpGG~lvl~~~~i 229 (322)
T PRK15068 191 DTVFS------MGVLYHRR------SP----------LDHLKQLKDQL----VPGGELVLETLVI 229 (322)
T ss_pred CEEEE------CChhhccC------CH----------HHHHHHHHHhc----CCCcEEEEEEEEe
Confidence 99996 33332211 11 23577777775 9999999886443
No 123
>PRK06922 hypothetical protein; Provisional
Probab=98.76 E-value=9e-08 Score=105.96 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=88.6
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
.++..+|.+|||+|||+|..+..+++..+ .+.|+|+|+|+..++.+++++...+. ++.++.+|+..++..++++.||.
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEE
Confidence 44556789999999999999988888765 47999999999999999998876664 57778889887765555678999
Q ss_pred EEECCCCCC-CCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSG-TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg-~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|++..+--- ...+. .... .++. ....++|..+.+.| ||||+++.+.-++
T Consensus 491 VVsn~vLH~L~syIp-~~g~--~f~~-------edl~kiLreI~RVL----KPGGrLII~D~v~ 540 (677)
T PRK06922 491 IVYSSILHELFSYIE-YEGK--KFNH-------EVIKKGLQSAYEVL----KPGGRIIIRDGIM 540 (677)
T ss_pred EEEchHHHhhhhhcc-cccc--cccH-------HHHHHHHHHHHHHc----CCCcEEEEEeCcc
Confidence 997543100 00000 0000 0111 12345677777776 9999999875443
No 124
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.74 E-value=8.6e-08 Score=97.22 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=77.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+.+++.. ...|+|+|+|+..++.+++++...++ ++.+...|....+. .+.||.|++-
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~---~~~fD~I~~~ 191 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI---QEEYDFILST 191 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc---cCCccEEEEc
Confidence 34559999999999999999874 36899999999999999999999998 78888888765432 3789999873
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
..+. ....+ ....+|....+.| +|||++++.
T Consensus 192 ~vl~-------------~l~~~-------~~~~~l~~~~~~L----kpgG~~l~v 222 (287)
T PRK12335 192 VVLM-------------FLNRE-------RIPAIIKNMQEHT----NPGGYNLIV 222 (287)
T ss_pred chhh-------------hCCHH-------HHHHHHHHHHHhc----CCCcEEEEE
Confidence 3210 00111 2234566666665 999996653
No 125
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=9.3e-08 Score=95.07 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=80.8
Q ss_pred CcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcc
Q 010971 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPK 243 (496)
Q Consensus 165 ~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~ 243 (496)
+...+..+.|+..||.+||+.|+|+|+.+.+|+..++++|.|+.+|++..|.+.+.+..++.|+. |+.+++-|......
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 33456678889999999999999999999999999999999999999999999999999999985 68888888755432
Q ss_pred ccCCCCcCEEEECCC
Q 010971 244 VLGLNTVDRVLLDAP 258 (496)
Q Consensus 244 ~~~~~~fD~VLlDaP 258 (496)
......+|.|++|.|
T Consensus 172 ~~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLP 186 (314)
T ss_pred cccccccceEEEcCC
Confidence 223478999999988
No 126
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.74 E-value=2.3e-07 Score=95.57 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=80.1
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
.+.+.+|.+|||+|||+|..+..++.. +...|+++|.|+..+..+...-+..+. .++.+...|...++.. ..||
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~---~~FD 190 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL---YAFD 190 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC---CCcC
Confidence 346778999999999999998877764 335899999999888765443333332 3566777777766532 5799
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eEN 320 (496)
.|++ .|++-+.+ ++ ...|..+.+.| +|||.||.+|..+...++
T Consensus 191 ~V~s------~gvL~H~~------dp----------~~~L~el~r~L----kpGG~Lvletl~i~g~~~ 233 (314)
T TIGR00452 191 TVFS------MGVLYHRK------SP----------LEHLKQLKHQL----VIKGELVLETLVIDGDLN 233 (314)
T ss_pred EEEE------cchhhccC------CH----------HHHHHHHHHhc----CCCCEEEEEEEEecCccc
Confidence 9986 34432211 11 22466666765 999999999876654443
No 127
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.74 E-value=1.6e-07 Score=92.35 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=82.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
+.++.+|||+|||+|..+..++..+. +.+.|+++|+++.++..+++++...+. .++.++..|+..++ + ..+|.|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--~--~~~d~v 126 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--I--KNASMV 126 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--C--CCCCEE
Confidence 35788999999999999999988753 357999999999999999999988775 36889999998775 2 458988
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
++.-. + . .....+ ...+|..+.+.| +|||.|+.+.-
T Consensus 127 ~~~~~------l------~-~~~~~~-------~~~~l~~i~~~L----kpgG~l~i~d~ 162 (239)
T TIGR00740 127 ILNFT------L------Q-FLPPED-------RIALLTKIYEGL----NPNGVLVLSEK 162 (239)
T ss_pred eeecc------h------h-hCCHHH-------HHHHHHHHHHhc----CCCeEEEEeec
Confidence 75221 0 0 011111 235677777776 99999998754
No 128
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.73 E-value=1.1e-07 Score=88.74 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=69.2
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
+..+++.++++|||+|||+|..|..++.. .+.|+|+|+++..+..+++++.. ..++.+++.|+..++. ....|
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~--~~~~~ 78 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL--PKLQP 78 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc--cccCC
Confidence 44567788999999999999999999886 36899999999999999999864 4578999999988753 22469
Q ss_pred CEEEECCCC
Q 010971 251 DRVLLDAPC 259 (496)
Q Consensus 251 D~VLlDaPC 259 (496)
|.|+.|+|.
T Consensus 79 d~vi~n~Py 87 (169)
T smart00650 79 YKVVGNLPY 87 (169)
T ss_pred CEEEECCCc
Confidence 999999995
No 129
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.72 E-value=4.9e-07 Score=92.30 Aligned_cols=123 Identities=16% Similarity=0.127 Sum_probs=91.3
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~ 247 (496)
..+..++..++.+|||+|||+|..+..+++..++ +.++++|. +..++.+++++...|+. ++.++.+|+...+ +
T Consensus 140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--~-- 213 (306)
T TIGR02716 140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--Y-- 213 (306)
T ss_pred HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--C--
Confidence 3345566778899999999999999999998754 78999997 78999999999999986 4889999986533 2
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
..+|.|++- +++ ..|+.+. -.++|.++.+.| +|||+|+.....+...++.
T Consensus 214 ~~~D~v~~~------~~l-------h~~~~~~-------~~~il~~~~~~L----~pgG~l~i~d~~~~~~~~~ 263 (306)
T TIGR02716 214 PEADAVLFC------RIL-------YSANEQL-------STIMCKKAFDAM----RSGGRLLILDMVIDDPENP 263 (306)
T ss_pred CCCCEEEeE------hhh-------hcCChHH-------HHHHHHHHHHhc----CCCCEEEEEEeccCCCCCc
Confidence 347998761 111 1222222 145788888886 9999999888766554443
No 130
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.71 E-value=2.6e-08 Score=101.58 Aligned_cols=163 Identities=18% Similarity=0.215 Sum_probs=99.8
Q ss_pred CcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHc------CCCcEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEec
Q 010971 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALM------KNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNY 236 (496)
Q Consensus 165 ~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~------~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n--v~v~~~ 236 (496)
.-+.+.+.++.+.++.+|||.|||+|+..+.+...+ .....++|+|+++..+..+.-|+.-.|+.. ..+...
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 334577777889999999999999999998877754 244689999999999999998887666543 457788
Q ss_pred CCCCCccccCCCCcCEEEECCCCCCCCcccC--CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISK--DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 237 D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r--~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|....+.......||.||.+||....+.... ..+.+|... ...-...+...+.++++.| ++||++++..-+
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Fi~~~l~~L----k~~G~~~~Ilp~ 185 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAEYAFIEHALSLL----KPGGRAAIILPN 185 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHHHHHHHHHHHTE----EEEEEEEEEEEH
T ss_pred ccccccccccccccccccCCCCcccccccccccccccccccc---CCCccchhhhhHHHHHhhc----ccccceeEEecc
Confidence 8765543322468999999999887643111 011122211 0000111223678888887 999997766553
Q ss_pred -CCCcCC--HHHHHHHHHhCCcE
Q 010971 315 -IMVTEN--EAVIDYALKKRDVK 334 (496)
Q Consensus 315 -i~~eEN--E~vV~~~L~~~~~~ 334 (496)
++...+ ..+-++++++..++
T Consensus 186 ~~L~~~~~~~~iR~~ll~~~~i~ 208 (311)
T PF02384_consen 186 GFLFSSSSEKKIRKYLLENGYIE 208 (311)
T ss_dssp HHHHGSTHHHHHHHHHHHHEEEE
T ss_pred hhhhccchHHHHHHHHHhhchhh
Confidence 322232 34556777776433
No 131
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.71 E-value=2e-07 Score=89.23 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=83.5
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
.+...++.+|||+|||+|..+..++...+..+.++++|+++..+..+++++. ...++.+...|+..++ +..+.||+
T Consensus 34 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~--~~~~~~D~ 109 (223)
T TIGR01934 34 LIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP--FEDNSFDA 109 (223)
T ss_pred HhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC--CCCCcEEE
Confidence 3445578999999999999999999887644789999999999999998876 3346788888887765 23368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
|++.- + +..- .+ -..+|..+..+| +|||+|+..+.+.
T Consensus 110 i~~~~---~---~~~~---------~~-------~~~~l~~~~~~L----~~gG~l~~~~~~~ 146 (223)
T TIGR01934 110 VTIAF---G---LRNV---------TD-------IQKALREMYRVL----KPGGRLVILEFSK 146 (223)
T ss_pred EEEee---e---eCCc---------cc-------HHHHHHHHHHHc----CCCcEEEEEEecC
Confidence 98621 1 1100 01 124577777776 9999999877664
No 132
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.71 E-value=3e-08 Score=97.38 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=78.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
-+|.+|||+|||-|..+..||++- ..|+|+|+++..++.++......|+. +........++.. ..++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~--~~~~FDvV~c- 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLAS--AGGQFDVVTC- 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHh--cCCCccEEEE-
Confidence 479999999999999999998862 68999999999999999999998885 3232223333321 1268999997
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+-+.....- ..++.++.++| ||||.++.||-.
T Consensus 131 --------------------mEVlEHv~dp-~~~~~~c~~lv----kP~G~lf~STin 163 (243)
T COG2227 131 --------------------MEVLEHVPDP-ESFLRACAKLV----KPGGILFLSTIN 163 (243)
T ss_pred --------------------hhHHHccCCH-HHHHHHHHHHc----CCCcEEEEeccc
Confidence 1223333222 33788888987 999999999866
No 133
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.70 E-value=6.4e-08 Score=92.87 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=65.0
Q ss_pred cccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec
Q 010971 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
...|-+...-|.+ ..++..-++.++||++||.|.-+++||++ .-.|+|+|.|+..++.+.+.+++.+++ |.+...
T Consensus 10 ~kky~~~~~hs~v-~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~ 84 (192)
T PF03848_consen 10 HKKYGLTPTHSEV-LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVA 84 (192)
T ss_dssp HHHHTB----HHH-HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-
T ss_pred HHhhCCCCCcHHH-HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEe
Confidence 3344455555553 45566666789999999999999999986 248999999999999999999999887 888888
Q ss_pred CCCCCccccCCCCcCEEEE
Q 010971 237 DGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 237 D~~~~~~~~~~~~fD~VLl 255 (496)
|...+. + .+.||.|++
T Consensus 85 Dl~~~~--~-~~~yD~I~s 100 (192)
T PF03848_consen 85 DLNDFD--F-PEEYDFIVS 100 (192)
T ss_dssp BGCCBS----TTTEEEEEE
T ss_pred cchhcc--c-cCCcCEEEE
Confidence 876654 2 267999975
No 134
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.67 E-value=5.1e-08 Score=99.42 Aligned_cols=90 Identities=22% Similarity=0.227 Sum_probs=77.5
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC--C
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL--N 248 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~--~ 248 (496)
+.+|.+++|..|||++||.||.|.+|+..+++.|.|+|+|.++..+..+++++.. ..++.+++.|...+...... .
T Consensus 12 l~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 12 VDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred HHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCC
Confidence 4567788999999999999999999999987679999999999999999998876 46799999999887655432 2
Q ss_pred CcCEEEECCCCCCC
Q 010971 249 TVDRVLLDAPCSGT 262 (496)
Q Consensus 249 ~fD~VLlDaPCSg~ 262 (496)
.||.|++|-=||..
T Consensus 90 ~vDgIl~DLGvSs~ 103 (296)
T PRK00050 90 KVDGILLDLGVSSP 103 (296)
T ss_pred ccCEEEECCCcccc
Confidence 79999999888865
No 135
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.67 E-value=4.7e-07 Score=88.37 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=82.2
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
...+.+.++.+|||+|||+|..+..++.. ...++++|+++..+..+++++...+. ++.+...|...++.. ..+.|
T Consensus 41 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~f 115 (233)
T PRK05134 41 REHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE-HPGQF 115 (233)
T ss_pred HHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh-cCCCc
Confidence 33444567899999999999999888775 25799999999999999999988777 566667777665422 23689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+|++.-.+... + . ...+|..+.+++ +|||+|+.+++.
T Consensus 116 D~Ii~~~~l~~~------~------~----------~~~~l~~~~~~L----~~gG~l~v~~~~ 153 (233)
T PRK05134 116 DVVTCMEMLEHV------P------D----------PASFVRACAKLV----KPGGLVFFSTLN 153 (233)
T ss_pred cEEEEhhHhhcc------C------C----------HHHHHHHHHHHc----CCCcEEEEEecC
Confidence 999874221111 0 0 124567777775 999999998775
No 136
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.66 E-value=1.2e-07 Score=94.37 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=90.3
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCC-ccccC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL-PKVLG 246 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~-~~~~~ 246 (496)
+...++....-.+||++|++.|-.|++||..++..|.|+++|.++.+.+.++.++++.|+. +|.++.+|+... +....
T Consensus 70 lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~ 149 (247)
T PLN02589 70 FLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIE 149 (247)
T ss_pred HHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHh
Confidence 3344444445569999999999999999999888899999999999999999999999985 499999998764 32211
Q ss_pred ----CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 247 ----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 247 ----~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.+.||.||+|+- . ..+...+..++.+| +|||.||.-.+-+
T Consensus 150 ~~~~~~~fD~iFiDad------------------K-------~~Y~~y~~~~l~ll----~~GGviv~DNvl~ 193 (247)
T PLN02589 150 DGKYHGTFDFIFVDAD------------------K-------DNYINYHKRLIDLV----KVGGVIGYDNTLW 193 (247)
T ss_pred ccccCCcccEEEecCC------------------H-------HHhHHHHHHHHHhc----CCCeEEEEcCCCC
Confidence 258999999974 0 11233456666775 9999998765543
No 137
>PRK04457 spermidine synthase; Provisional
Probab=98.66 E-value=2e-07 Score=93.65 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=84.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.++.+|||+|+|.|..+..++...+ ...|+++|+++..++.+++++...+. .++.++.+|+..+.... ...||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-RHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-CCCCCEEEE
Confidence 3567899999999999999988875 47899999999999999998765543 57899999997763322 258999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|+- .+.++ |.. ....+++..+.+.| +|||.|+...++
T Consensus 143 D~~-~~~~~----~~~-------------l~t~efl~~~~~~L----~pgGvlvin~~~ 179 (262)
T PRK04457 143 DGF-DGEGI----IDA-------------LCTQPFFDDCRNAL----SSDGIFVVNLWS 179 (262)
T ss_pred eCC-CCCCC----ccc-------------cCcHHHHHHHHHhc----CCCcEEEEEcCC
Confidence 963 22221 110 01245677777776 999999886443
No 138
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.65 E-value=2.2e-07 Score=98.26 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=80.9
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
....+.+++|.+|||+|||+|+.+.+++...+ +.|+++|+|+..++.+++++.. + ++.+...|...+ .+.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~--l-~v~~~~~D~~~l-----~~~ 228 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG--L-PVEIRLQDYRDL-----NGQ 228 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc--C-eEEEEECchhhc-----CCC
Confidence 34556788999999999999999999988753 5899999999999999998853 3 366777787654 267
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
||.|++- +++..- .. .....++..+.++| +|||+++.++.+.
T Consensus 229 fD~Ivs~------~~~ehv-------g~-------~~~~~~l~~i~r~L----kpGG~lvl~~i~~ 270 (383)
T PRK11705 229 FDRIVSV------GMFEHV-------GP-------KNYRTYFEVVRRCL----KPDGLFLLHTIGS 270 (383)
T ss_pred CCEEEEe------CchhhC-------Ch-------HHHHHHHHHHHHHc----CCCcEEEEEEccC
Confidence 9999862 111100 00 11134567777775 9999999876543
No 139
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.63 E-value=7.1e-08 Score=90.82 Aligned_cols=132 Identities=25% Similarity=0.222 Sum_probs=75.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC------ccccC--C
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------PKVLG--L 247 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~------~~~~~--~ 247 (496)
+..+.+|||+||||||+|..+.+..+..+.|+|+|+.+. ....++..+.+|.... ...+. .
T Consensus 21 ~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 21 PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccc
Confidence 335699999999999999999988755689999999876 2224555555554331 11121 2
Q ss_pred CCcCEEEECC--CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 010971 248 NTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 248 ~~fD~VLlDa--PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~ 325 (496)
..||+|++|. +|+|... .... ....+....|.-|+..| +|||.+|.-+... .+.+.++.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~----------~d~~---~~~~l~~~~l~~a~~~L----~~gG~~v~K~~~~--~~~~~~~~ 150 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRN----------IDEF---ISIRLILSQLLLALELL----KPGGTFVIKVFKG--PEIEELIY 150 (181)
T ss_dssp CSESEEEE-------SSHH----------SSHH---HHHHHHHHHHHHHHHHH----CTTEEEEEEESSS--TTSHHHHH
T ss_pred cCcceeccccccCCCCchh----------hHHH---HHHHHHHHHHHHHHhhh----cCCCEEEEEeccC--ccHHHHHH
Confidence 5899999997 5555421 1111 11233333445566665 9999988766553 23345555
Q ss_pred HHHHhC-CcEEee
Q 010971 326 YALKKR-DVKLVP 337 (496)
Q Consensus 326 ~~L~~~-~~~lv~ 337 (496)
.+-... .+.++.
T Consensus 151 ~l~~~F~~v~~~K 163 (181)
T PF01728_consen 151 LLKRCFSKVKIVK 163 (181)
T ss_dssp HHHHHHHHEEEEE
T ss_pred HHHhCCeEEEEEE
Confidence 443332 344443
No 140
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.61 E-value=4.7e-07 Score=94.15 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++.+|||+|||+|..+..++...+. +.|+++|+++..++.++++.. ..++.++..|+..++ +..+.||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp--~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLP--FPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCC--CCCCceeEEEEc
Confidence 46889999999999999988887643 689999999999999988764 346778889987765 234689999873
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
. ++..-+ . ...+|.++.+.| +|||+++...
T Consensus 186 ~------~L~~~~------d----------~~~~L~e~~rvL----kPGG~LvIi~ 215 (340)
T PLN02490 186 G------SIEYWP------D----------PQRGIKEAYRVL----KIGGKACLIG 215 (340)
T ss_pred C------hhhhCC------C----------HHHHHHHHHHhc----CCCcEEEEEE
Confidence 2 111111 1 123578888876 9999998753
No 141
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.60 E-value=3.6e-07 Score=98.76 Aligned_cols=120 Identities=19% Similarity=0.135 Sum_probs=82.3
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
......+.+.++.+|||+|||+|..+..++... +.|+|+|+++..++...... ....++.+++.|+......++.
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccccCCCC
Confidence 344455666778899999999999999999863 58999999999987654321 1245788888998643212334
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
+.||.|++..++.- .+..+ ...+|..+.+.| +|||+|++...++.
T Consensus 102 ~~fD~I~~~~~l~~-------------l~~~~-------~~~~l~~~~r~L----k~gG~l~~~d~~~~ 146 (475)
T PLN02336 102 GSVDLIFSNWLLMY-------------LSDKE-------VENLAERMVKWL----KVGGYIFFRESCFH 146 (475)
T ss_pred CCEEEEehhhhHHh-------------CCHHH-------HHHHHHHHHHhc----CCCeEEEEEeccCC
Confidence 78999998654211 11111 134667777765 99999988755444
No 142
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.59 E-value=1.6e-07 Score=90.28 Aligned_cols=134 Identities=16% Similarity=0.281 Sum_probs=92.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~~~fD~VLlD 256 (496)
....+||+|||.|...+.+|...++ ..++|+|++..++..+...+.+.++.|+.+++.|+..+ ...+.++++|.|.+.
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 3448999999999999999999865 78999999999999999999999999999999999884 444555899999987
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH---h--C
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK---K--R 331 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~---~--~ 331 (496)
=| ||..+.+-....+ .|..+|....+.| +|||.|...| .++....++++ . .
T Consensus 96 FP---------DPWpK~rH~krRl-----~~~~fl~~~~~~L----~~gG~l~~~T------D~~~y~~~~~~~~~~~~~ 151 (195)
T PF02390_consen 96 FP---------DPWPKKRHHKRRL-----VNPEFLELLARVL----KPGGELYFAT------DVEEYAEWMLEQFEESHP 151 (195)
T ss_dssp S--------------SGGGGGGST-----TSHHHHHHHHHHE----EEEEEEEEEE------S-HHHHHHHHHHHHHHST
T ss_pred CC---------CCCcccchhhhhc-----CCchHHHHHHHHc----CCCCEEEEEe------CCHHHHHHHHHHHHhcCc
Confidence 66 4433322111111 2345566666665 9999997765 44555555443 2 3
Q ss_pred CcEEe
Q 010971 332 DVKLV 336 (496)
Q Consensus 332 ~~~lv 336 (496)
.++.+
T Consensus 152 ~f~~~ 156 (195)
T PF02390_consen 152 GFENI 156 (195)
T ss_dssp TEEEE
T ss_pred CeEEc
Confidence 56655
No 143
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.57 E-value=4.6e-07 Score=87.56 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=80.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..+.+|||+|||+|..+..+++.. ..++++|+++..+..++.++...++.++.+...|+..++... .+.||.|++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~ 119 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCM 119 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-CCCccEEEeh
Confidence 358899999999999998887642 469999999999999999999888767888888877664322 3689999873
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.. + . .......+|..+.+.+ +|||.++.++|.
T Consensus 120 ~~------l---------------~-~~~~~~~~l~~~~~~L----~~gG~l~i~~~~ 151 (224)
T TIGR01983 120 EV------L---------------E-HVPDPQAFIRACAQLL----KPGGILFFSTIN 151 (224)
T ss_pred hH------H---------------H-hCCCHHHHHHHHHHhc----CCCcEEEEEecC
Confidence 21 0 0 0011234677777775 999999988874
No 144
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.54 E-value=9.3e-07 Score=85.73 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=61.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+.++.+|||+|||+|..+..++.. ...|+|+|+++..+..+++++...+. .++.+...|+..++ ..||+|+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ii 124 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDIVV 124 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCEEE
Confidence 457899999999999999998874 25899999999999999999988876 46888889987654 5799998
Q ss_pred E
Q 010971 255 L 255 (496)
Q Consensus 255 l 255 (496)
+
T Consensus 125 ~ 125 (219)
T TIGR02021 125 C 125 (219)
T ss_pred E
Confidence 6
No 145
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.54 E-value=4.9e-07 Score=87.33 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=76.3
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..+.+|||+|||+|..+.+++...+ ...++++|+++..+..+..++. .++.++..|...++. ..+.||+|++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--EDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--CCCceeEEEEh
Confidence 3457999999999999999998865 4679999999999988877654 367788888877652 34789999975
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..+... .. -..+|..+.++| +|||.+++++
T Consensus 106 ~~l~~~------------~~----------~~~~l~~~~~~L----~~~G~l~~~~ 135 (240)
T TIGR02072 106 LALQWC------------DD----------LSQALSELARVL----KPGGLLAFST 135 (240)
T ss_pred hhhhhc------------cC----------HHHHHHHHHHHc----CCCcEEEEEe
Confidence 432110 00 123567777765 9999999875
No 146
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=2.5e-07 Score=99.02 Aligned_cols=114 Identities=16% Similarity=0.262 Sum_probs=85.2
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCC--CC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGL--NT 249 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~--~~ 249 (496)
.+...++..+||+|||+|..++.+|+. .+.|++++++++.+..+..|++.+|++|..++++-+.++ +..+.. ..
T Consensus 378 ~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~ 454 (534)
T KOG2187|consen 378 WAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDS 454 (534)
T ss_pred HhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCC
Confidence 356677899999999999999988875 468999999999999999999999999999999855443 333311 23
Q ss_pred cC-EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc
Q 010971 250 VD-RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (496)
Q Consensus 250 fD-~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e 318 (496)
-+ ++++|||-.|.-. .+..+++.. +.--+|||.+|..+..
T Consensus 455 ~~~v~iiDPpR~Glh~-------------------------~~ik~l~~~----~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 455 ETLVAIIDPPRKGLHM-------------------------KVIKALRAY----KNPRRLVYVSCNPHTA 495 (534)
T ss_pred CceEEEECCCcccccH-------------------------HHHHHHHhc----cCccceEEEEcCHHHh
Confidence 45 8899999665421 133333332 3336899999998753
No 147
>PRK00811 spermidine synthase; Provisional
Probab=98.52 E-value=1.1e-06 Score=89.20 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=86.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEecCCCCCccccCCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-----~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
...+|||+|+|.|+.+..++.. .+...|+++|+++..++.+++.+..++ -.++.++..|+..+... ..+.||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcccE
Confidence 4579999999999999888764 234689999999999999999987653 24588999999876432 2368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
|++|++-- .| | ...+ ...+++..+.+.| +|||.+|.-+-+. ......+..+++.
T Consensus 154 Ii~D~~dp-~~-----~-------~~~l-----~t~ef~~~~~~~L----~~gGvlv~~~~~~--~~~~~~~~~i~~t 207 (283)
T PRK00811 154 IIVDSTDP-VG-----P-------AEGL-----FTKEFYENCKRAL----KEDGIFVAQSGSP--FYQADEIKDMHRK 207 (283)
T ss_pred EEECCCCC-CC-----c-------hhhh-----hHHHHHHHHHHhc----CCCcEEEEeCCCc--ccCHHHHHHHHHH
Confidence 99997410 11 0 0111 1245566666665 9999998754332 2334455554443
No 148
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.51 E-value=1.2e-06 Score=90.34 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=66.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCe-EEEE-ecCCCCCcccc--CCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVC-NYDGNELPKVL--GLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-g~~n-v~v~-~~D~~~~~~~~--~~~~fD~ 252 (496)
.+.+|||+|||+|+....|++...+ ..++|+|+++..++.++.|++.+ ++.+ |.+. +.|...+.... ..+.||.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~-~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYG-WRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 5789999999999999988887653 68999999999999999999999 7864 6554 33433332211 2368999
Q ss_pred EEECCCCCCCC
Q 010971 253 VLLDAPCSGTG 263 (496)
Q Consensus 253 VLlDaPCSg~G 263 (496)
|+|+||.-.++
T Consensus 193 ivcNPPf~~s~ 203 (321)
T PRK11727 193 TLCNPPFHASA 203 (321)
T ss_pred EEeCCCCcCcc
Confidence 99999987654
No 149
>PRK01581 speE spermidine synthase; Validated
Probab=98.47 E-value=1.8e-06 Score=90.12 Aligned_cols=127 Identities=14% Similarity=0.153 Sum_probs=81.2
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH-----HHHcC--CCeEEEEecCCCCCccc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN-----LHRMG--VTNTIVCNYDGNELPKV 244 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~n-----l~r~g--~~nv~v~~~D~~~~~~~ 244 (496)
++..+.| .+||++|+|.|+.+..+... ++...|+++|+++..++.++.. +.+.+ -.++.++..|+..+...
T Consensus 145 m~~h~~P-krVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 145 MSKVIDP-KRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred HHhCCCC-CEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh
Confidence 3334444 59999999999966555543 3446899999999999999862 22222 34689999999876433
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHH
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV 324 (496)
. .+.||+|++|.|= |... ....+ ...+.+..+.+.| +|||.+|.-..|. .....++
T Consensus 223 ~-~~~YDVIIvDl~D---------P~~~---~~~~L-----yT~EFy~~~~~~L----kPgGV~V~Qs~sp--~~~~~~~ 278 (374)
T PRK01581 223 P-SSLYDVIIIDFPD---------PATE---LLSTL-----YTSELFARIATFL----TEDGAFVCQSNSP--ADAPLVY 278 (374)
T ss_pred c-CCCccEEEEcCCC---------cccc---chhhh-----hHHHHHHHHHHhc----CCCcEEEEecCCh--hhhHHHH
Confidence 2 3689999999761 1100 00111 1144566666665 9999988764433 3344443
No 150
>PRK10742 putative methyltransferase; Provisional
Probab=98.47 E-value=1.5e-06 Score=86.24 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=76.0
Q ss_pred chhHHHhcCCCCCC--eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc------CC---CeEEEEe
Q 010971 167 SFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM------GV---TNTIVCN 235 (496)
Q Consensus 167 S~l~v~~L~~~~g~--~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~------g~---~nv~v~~ 235 (496)
....+.++.+++|. +|||++||.|.-++.++.+ .+.|+++|.++.-...+..+++++ +. .++.+++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 35668888889998 9999999999999999887 357999999999999999999996 43 5688999
Q ss_pred cCCCCCccccCCCCcCEEEECCCCCC
Q 010971 236 YDGNELPKVLGLNTVDRVLLDAPCSG 261 (496)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VLlDaPCSg 261 (496)
.|+..+..... ..||+|.+|||.-.
T Consensus 152 ~da~~~L~~~~-~~fDVVYlDPMfp~ 176 (250)
T PRK10742 152 ASSLTALTDIT-PRPQVVYLDPMFPH 176 (250)
T ss_pred CcHHHHHhhCC-CCCcEEEECCCCCC
Confidence 99877644332 47999999999643
No 151
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.47 E-value=4.9e-07 Score=92.34 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=78.4
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDG 238 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-~~nv~v~~~D~ 238 (496)
|+++.......+..+.+.++++|||+|||+|..|..++... +.|+|+|+|+..+..+++++...+ ..++.++++|+
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 43333333445666778899999999999999999988762 579999999999999999999887 46799999999
Q ss_pred CCCccccCCCCcCEEEECCCCCCCC
Q 010971 239 NELPKVLGLNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaPCSg~G 263 (496)
..++ + ..||.|+.+.|+..+.
T Consensus 95 l~~~--~--~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 95 LKTE--F--PYFDVCVANVPYQISS 115 (294)
T ss_pred hhhc--c--cccCEEEecCCcccCc
Confidence 7754 2 4699999999987653
No 152
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.46 E-value=6.1e-07 Score=88.37 Aligned_cols=122 Identities=16% Similarity=0.246 Sum_probs=97.1
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC-CCcCEEEECCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL-NTVDRVLLDAP 258 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~-~~fD~VLlDaP 258 (496)
..+||+|||.|...+++|+.-+. .-++|+|+....+..+...+.+.|++|+.+++.|+..+-..+.. ++.|.|.+.=|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999999765 57999999999999999999999999999999999887554544 48999998766
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 259 CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
||.-|.+.....+ +|...|....+.| +|||.|.+.| .++....+
T Consensus 129 ---------DPWpKkRH~KRRl-----~~~~fl~~~a~~L----k~gG~l~~aT------D~~~y~e~ 172 (227)
T COG0220 129 ---------DPWPKKRHHKRRL-----TQPEFLKLYARKL----KPGGVLHFAT------DNEEYFEW 172 (227)
T ss_pred ---------CCCCCcccccccc-----CCHHHHHHHHHHc----cCCCEEEEEe------cCHHHHHH
Confidence 5555444333333 4566677777775 9999998766 45666666
No 153
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.45 E-value=1.5e-06 Score=87.41 Aligned_cols=72 Identities=13% Similarity=0.275 Sum_probs=58.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~--g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+.+|||+|||+|..+..++..++.. ..|+++|+|+..+..+.++ ..++.+..+|+..+| +..+.||.|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp--~~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLP--FADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCC--CcCCceeEEE
Confidence 456889999999999999999877543 3799999999999888654 246778888988876 3447899998
Q ss_pred E
Q 010971 255 L 255 (496)
Q Consensus 255 l 255 (496)
.
T Consensus 157 ~ 157 (272)
T PRK11088 157 R 157 (272)
T ss_pred E
Confidence 5
No 154
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.44 E-value=1.8e-06 Score=86.82 Aligned_cols=112 Identities=14% Similarity=0.208 Sum_probs=75.9
Q ss_pred CCCCeEeeccCCCch----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHH------Hc-------------C--
Q 010971 177 QEKERVIDMAAAPGG----KTTYIAALMKN----TGLIYANEMKASRLKSLTANLH------RM-------------G-- 227 (496)
Q Consensus 177 ~~g~~VLDmcAgpGg----KT~~lA~l~~~----~g~V~A~D~s~~rl~~l~~nl~------r~-------------g-- 227 (496)
.++.+|||+|||+|- .++.+++.++. ...|+|+|+|+..++.+++.+- .+ |
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 356799999999996 45555665442 4689999999999999987531 00 0
Q ss_pred -----C-CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010971 228 -----V-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 228 -----~-~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~ 301 (496)
+ .+|.+...|....+. ..+.||+|+| .. ++ ...+ ...+.+++....+.|
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~c----rn--vl-------~yf~-------~~~~~~~l~~l~~~L--- 232 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP--PLGDFDLIFC----RN--VL-------IYFD-------EPTQRKLLNRFAEAL--- 232 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC--ccCCCCEEEe----ch--hH-------HhCC-------HHHHHHHHHHHHHHh---
Confidence 1 257888888877653 2378999996 11 10 0011 134566788888876
Q ss_pred CCCCcEEEEEeCC
Q 010971 302 SKSGGYIVYSTCS 314 (496)
Q Consensus 302 lkpGG~LVYSTCS 314 (496)
+|||+|+....-
T Consensus 233 -~pGG~L~lg~~E 244 (264)
T smart00138 233 -KPGGYLFLGHSE 244 (264)
T ss_pred -CCCeEEEEECcc
Confidence 999999976543
No 155
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.43 E-value=1.3e-06 Score=83.76 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=76.8
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
+...+|.-..-.++||+|||.|..|..||... ..|+|+|+++..++.+++++.. ..+|.+...|...+ .+.+
T Consensus 34 ~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~---~P~~ 105 (201)
T PF05401_consen 34 TLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEF---WPEG 105 (201)
T ss_dssp HHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT------SS
T ss_pred HHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCC---CCCC
Confidence 33345655667899999999999999998874 5899999999999999999975 46899999988654 3458
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCH-HHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSL-EDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~-~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.||+|++ |..+ +-++. +++ ..++......| .|||.||..+-
T Consensus 106 ~FDLIV~----SEVl---------YYL~~~~~L-------~~~l~~l~~~L----~pgG~LV~g~~ 147 (201)
T PF05401_consen 106 RFDLIVL----SEVL---------YYLDDAEDL-------RAALDRLVAAL----APGGHLVFGHA 147 (201)
T ss_dssp -EEEEEE----ES-G---------GGSSSHHHH-------HHHHHHHHHTE----EEEEEEEEEEE
T ss_pred CeeEEEE----ehHh---------HcCCCHHHH-------HHHHHHHHHHh----CCCCEEEEEEe
Confidence 9999986 3333 33332 332 23345555554 99999999654
No 156
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.41 E-value=7.7e-07 Score=89.01 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=75.0
Q ss_pred EEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
|.+........+..+++.+|++|||+|||+|..|..+++. ...|+|+|+++..++.+++++.. ..++.++++|+.
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~ 85 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDAL 85 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccc
Confidence 4443333445566677889999999999999999999987 25899999999999999988865 468999999998
Q ss_pred CCccccCCCCcCEEEECCCCCC
Q 010971 240 ELPKVLGLNTVDRVLLDAPCSG 261 (496)
Q Consensus 240 ~~~~~~~~~~fD~VLlDaPCSg 261 (496)
.++ + ..||.|+.++|..-
T Consensus 86 ~~~--~--~~~d~Vv~NlPy~i 103 (258)
T PRK14896 86 KVD--L--PEFNKVVSNLPYQI 103 (258)
T ss_pred cCC--c--hhceEEEEcCCccc
Confidence 765 2 45899999999753
No 157
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.41 E-value=2.8e-06 Score=85.54 Aligned_cols=124 Identities=14% Similarity=0.101 Sum_probs=84.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+||++|+|.|+.+..++... ....++++|+++..++.+++++..++ ..++.+...|+..+-... .+.||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEEE
Confidence 4499999999999887776653 24689999999999999999886653 245778888987653222 36899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L 328 (496)
+|++-. .+. . ..+ ...+.+..+.+.| +|||.++..++|.. -+...+..+.
T Consensus 151 ~D~~~~-~~~-----~-------~~l-----~~~ef~~~~~~~L----~pgG~lv~~~~~~~--~~~~~~~~~~ 200 (270)
T TIGR00417 151 VDSTDP-VGP-----A-------ETL-----FTKEFYELLKKAL----NEDGIFVAQSESPW--IQLELITDLK 200 (270)
T ss_pred EeCCCC-CCc-----c-------cch-----hHHHHHHHHHHHh----CCCcEEEEcCCCcc--cCHHHHHHHH
Confidence 998621 111 0 011 1134556666665 99999998877643 3344444433
No 158
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.41 E-value=4.3e-08 Score=82.85 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=48.0
Q ss_pred eeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 183 LDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
||+|||+|..+.++++.. +...++++|+|+..+..+++++...+..+...+..+..........+.||.|++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~ 72 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVA 72 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehh
Confidence 799999999999999987 458999999999999999999999887665555555444332222258999997
No 159
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.40 E-value=1.4e-06 Score=86.59 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=72.9
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-CCe------EEEEecCCCCCccccCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTN------TIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-~~n------v~v~~~D~~~~~~~~~~~ 248 (496)
|-.|..|||+|||.|-.|.+||.+- ..|+|+|+++..++.+++. +.+. +.+ +.+.+.|+..+. +
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~-----~ 157 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT-----G 157 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc-----c
Confidence 4457889999999999999999873 6899999999999999988 4443 222 223344443332 5
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.||.|+| .++.+....-..++...+.+| +|||.|+.||-
T Consensus 158 ~fDaVvc----------------------sevleHV~dp~~~l~~l~~~l----kP~G~lfitti 196 (282)
T KOG1270|consen 158 KFDAVVC----------------------SEVLEHVKDPQEFLNCLSALL----KPNGRLFITTI 196 (282)
T ss_pred ccceeee----------------------HHHHHHHhCHHHHHHHHHHHh----CCCCceEeeeh
Confidence 6999987 122222222345677777776 99999998874
No 160
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.40 E-value=8.2e-07 Score=86.43 Aligned_cols=122 Identities=26% Similarity=0.384 Sum_probs=85.9
Q ss_pred CeEeeccCCCchHHHHHHHHcCC----Cc----EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC------cccc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKN----TG----LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------PKVL 245 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~----~g----~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~------~~~~ 245 (496)
.+|+|+|||||+++..|+..+-. .+ .|+|+|+.+- ..+..|..+.+|.+.. ...+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHHh
Confidence 58999999999999999987632 33 3999998651 2356688888898764 2334
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~ 325 (496)
.....|+|+||..---+|+ .++.+. .|.+||.+|+.+...+|+|||.+|- -|+.-++-..+-
T Consensus 112 ggekAdlVvcDGAPDvTGl-------------Hd~DEy--~Q~qLllaAl~i~t~Vlk~Gg~FVa---KifRg~~tslLy 173 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGL-------------HDLDEY--VQAQLLLAALNIATCVLKPGGSFVA---KIFRGRDTSLLY 173 (294)
T ss_pred CCCCccEEEeCCCCCcccc-------------ccHHHH--HHHHHHHHHHHHHhheecCCCeeeh---hhhccCchHHHH
Confidence 5568999999954333342 333333 5778899999998889999999973 455666655544
Q ss_pred HHHHh
Q 010971 326 YALKK 330 (496)
Q Consensus 326 ~~L~~ 330 (496)
.-|+.
T Consensus 174 sql~~ 178 (294)
T KOG1099|consen 174 SQLRK 178 (294)
T ss_pred HHHHH
Confidence 33433
No 161
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.40 E-value=3.4e-06 Score=86.31 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=80.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCc---CE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTV---DR 252 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~f---D~ 252 (496)
.++.+|||+|||+|.+|..|++.+.....++++|+|+.+|..+.+++..... -++..+++|+....... ..+ +.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~--~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP--PEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh--cccccCCe
Confidence 4678999999999999999998875446899999999999999999876432 24667888987632222 222 33
Q ss_pred --EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 010971 253 --VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 253 --VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~ 327 (496)
++++.+ .|. ..+++ ...+|..+.+.| +|||.++...=+. .+.+++..+
T Consensus 140 ~~~~~gs~---~~~----------~~~~e-------~~~~L~~i~~~L----~pgG~~lig~d~~---~~~~~~~~a 189 (301)
T TIGR03438 140 LGFFPGST---IGN----------FTPEE-------AVAFLRRIRQLL----GPGGGLLIGVDLV---KDPAVLEAA 189 (301)
T ss_pred EEEEeccc---ccC----------CCHHH-------HHHHHHHHHHhc----CCCCEEEEeccCC---CCHHHHHHh
Confidence 332222 221 22222 245677777765 9999998754333 444555443
No 162
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.34 E-value=1.5e-06 Score=82.19 Aligned_cols=114 Identities=20% Similarity=0.199 Sum_probs=80.2
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEE---
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLL--- 255 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLl--- 255 (496)
.+|||+|||.|.....|++-- =.+.++++|.++..++.++.-+++.|+.| |.+.+.|.... .. ..+.||+||=
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~-~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DF-LSGQFDLVLDKGT 145 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cc-cccceeEEeecCc
Confidence 399999999999887777642 24579999999999999999999999998 99999998764 32 2478998872
Q ss_pred -CCC-CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC
Q 010971 256 -DAP-CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (496)
Q Consensus 256 -DaP-CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE 319 (496)
||= -|+.+. .-+. ..-++.|...|+|||++|.++|-++..|
T Consensus 146 ~DAisLs~d~~-----~~r~------------------~~Y~d~v~~ll~~~gifvItSCN~T~dE 188 (227)
T KOG1271|consen 146 LDAISLSPDGP-----VGRL------------------VVYLDSVEKLLSPGGIFVITSCNFTKDE 188 (227)
T ss_pred eeeeecCCCCc-----ccce------------------eeehhhHhhccCCCcEEEEEecCccHHH
Confidence 221 011111 1110 1111223333599999999999998654
No 163
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.33 E-value=8.7e-06 Score=85.27 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=105.0
Q ss_pred CCCcccccccEEEeCCcchh----H--HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCC--------------------
Q 010971 150 GATPEYMAGFYMLQSASSFL----P--VMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-------------------- 203 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~l----~--v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-------------------- 203 (496)
...+.++.||=.-+.++..- + +.+.+.+++..++|-.||+|...+..|.+..|-
T Consensus 157 tG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~l 236 (381)
T COG0116 157 TGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDL 236 (381)
T ss_pred CCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHH
Confidence 44577888877777766532 1 223356788899999999999998877665321
Q ss_pred -----------c-------EEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCCCCCCc
Q 010971 204 -----------G-------LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264 (496)
Q Consensus 204 -----------g-------~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~ 264 (496)
+ .++++|+++..++.++.|+.+.|+.. |.+...|++.+...+ ..+|+|++|||+- .-
T Consensus 237 w~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYG-eR- 312 (381)
T COG0116 237 WDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYG-ER- 312 (381)
T ss_pred HHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcc-hh-
Confidence 1 47899999999999999999999976 889999999987654 6899999999963 11
Q ss_pred ccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 265 i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
. .+-.....++..+...+-+.+ +.-++.|++|-.
T Consensus 313 --------l----g~~~~v~~LY~~fg~~lk~~~----~~ws~~v~tt~e 346 (381)
T COG0116 313 --------L----GSEALVAKLYREFGRTLKRLL----AGWSRYVFTTSE 346 (381)
T ss_pred --------c----CChhhHHHHHHHHHHHHHHHh----cCCceEEEEccH
Confidence 1 111233446677776666665 666677776543
No 164
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.33 E-value=4.2e-07 Score=88.76 Aligned_cols=142 Identities=14% Similarity=0.111 Sum_probs=91.8
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecCCCCCccccCCC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--TNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~--~nv~v~~~D~~~~~~~~~~~ 248 (496)
+.++.|+.|++|||.|.|-|-.++..+. .+...|+.+|.++.-|..+.-|==.-++ .++.++.+|+..+-+.+.+.
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~--rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALE--RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHH--cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcc
Confidence 4455678899999999999998765444 3545899999999988766554322222 25789999998887777788
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC-CCCc---CCHHHH
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS-IMVT---ENEAVI 324 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS-i~~e---ENE~vV 324 (496)
+||.|+-|||-.+ ..- .+.. .++..+..++| +|||.|+--|-. -... .-..-|
T Consensus 205 sfDaIiHDPPRfS-------------~Ag-eLYs-----eefY~El~RiL----krgGrlFHYvG~Pg~ryrG~d~~~gV 261 (287)
T COG2521 205 SFDAIIHDPPRFS-------------LAG-ELYS-----EEFYRELYRIL----KRGGRLFHYVGNPGKRYRGLDLPKGV 261 (287)
T ss_pred ccceEeeCCCccc-------------hhh-hHhH-----HHHHHHHHHHc----CcCCcEEEEeCCCCcccccCChhHHH
Confidence 9999999999422 211 2221 23445555665 999998643322 1111 122334
Q ss_pred HHHHHhCCcEEee
Q 010971 325 DYALKKRDVKLVP 337 (496)
Q Consensus 325 ~~~L~~~~~~lv~ 337 (496)
..-|++-+|..|.
T Consensus 262 a~RLr~vGF~~v~ 274 (287)
T COG2521 262 AERLRRVGFEVVK 274 (287)
T ss_pred HHHHHhcCceeee
Confidence 4445555666554
No 165
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=1.1e-05 Score=77.49 Aligned_cols=140 Identities=24% Similarity=0.302 Sum_probs=100.4
Q ss_pred chhHHHhc------CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC
Q 010971 167 SFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~L------~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~ 240 (496)
|-|++..| .+.+|.+||=+||++|...+|++...+ .|.|+|+++++.-...|...+++ -.|+..+..|++.
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCC
Confidence 56666655 357899999999999999999999998 79999999999999998888876 3588889999986
Q ss_pred Ccccc-CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHH-HHHHhhhhcCCCCcEEEEE--eCCCC
Q 010971 241 LPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL-AAIDMVDANSKSGGYIVYS--TCSIM 316 (496)
Q Consensus 241 ~~~~~-~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~-~A~~~l~~~lkpGG~LVYS--TCSi~ 316 (496)
..+.. --+.+|+|..|.. ...|-+|+. +|-.+ |++||+++.+ .-|+.
T Consensus 136 P~~Y~~~Ve~VDviy~DVA-------------------------Qp~Qa~I~~~Na~~F----Lk~~G~~~i~iKArSId 186 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA-------------------------QPNQAEILADNAEFF----LKKGGYVVIAIKARSID 186 (231)
T ss_pred cHHhhhhcccccEEEEecC-------------------------CchHHHHHHHHHHHh----cccCCeEEEEEEeeccc
Confidence 42211 0157999999974 123555544 45555 4999966544 66776
Q ss_pred Cc-CCHHHHHHHHH---hCCcEEeec
Q 010971 317 VT-ENEAVIDYALK---KRDVKLVPC 338 (496)
Q Consensus 317 ~e-ENE~vV~~~L~---~~~~~lv~~ 338 (496)
.. +.++|-+.-.. ..+|++.+.
T Consensus 187 vT~dp~~vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 187 VTADPEEVFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred ccCCHHHHHHHHHHHHHhcCceeeEE
Confidence 65 45555554443 346666554
No 166
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.31 E-value=6.6e-06 Score=90.08 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=90.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..+..+||+|||.|..++++|...++ ..++|+|++...+..+...+.+.|+.|+.++..|+..+...++.+++|.|.+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 35789999999999999999999865 67999999999999999999999999999988888666555666789999987
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
=| ||.-|-+.....+ .|...|......| +|||.|.+.|=
T Consensus 425 FP---------DPWpKkrh~krRl-----~~~~fl~~~~~~L----k~gG~i~~~TD 463 (506)
T PRK01544 425 FP---------DPWIKNKQKKKRI-----FNKERLKILQDKL----KDNGNLVFASD 463 (506)
T ss_pred CC---------CCCCCCCCccccc-----cCHHHHHHHHHhc----CCCCEEEEEcC
Confidence 66 4443332222222 2344565556665 99999987664
No 167
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.29 E-value=5.8e-06 Score=80.65 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=72.6
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC---------------CeEEEEecCCCCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------------TNTIVCNYDGNEL 241 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~---------------~nv~v~~~D~~~~ 241 (496)
.++.+|||++||.|--+.+||+. .-.|+|+|+|+..++.+.. ..|+ .+|.+.++|+..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 57889999999999999999874 2489999999999997633 2222 2577888998877
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+... .+.||.|+--+ |- - ...+.. ....+....++| +|||++++.|-+.
T Consensus 107 ~~~~-~~~fD~i~D~~-~~-----~-------~l~~~~-------R~~~~~~l~~lL----kpgG~~ll~~~~~ 155 (213)
T TIGR03840 107 TAAD-LGPVDAVYDRA-AL-----I-------ALPEEM-------RQRYAAHLLALL----PPGARQLLITLDY 155 (213)
T ss_pred Cccc-CCCcCEEEech-hh-----c-------cCCHHH-------HHHHHHHHHHHc----CCCCeEEEEEEEc
Confidence 5321 25689886411 10 0 011111 123455556665 9999988877665
No 168
>PRK03612 spermidine synthase; Provisional
Probab=98.28 E-value=4.9e-06 Score=91.42 Aligned_cols=117 Identities=12% Similarity=0.166 Sum_probs=81.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHc-----CCCeEEEEecCCCCCccccCCCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN--LHRM-----GVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~n--l~r~-----g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
....+|||+|+|.|+.+..+++. +....|+++|+|+..++.++++ +..+ .-.++.+++.|++.+.... .++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCC
Confidence 34679999999999998887763 3336999999999999999984 3322 2246889999998764322 368
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
||+|++|+|-.. .|.. ..+ ...+++..+.+.| +|||.++..++|..
T Consensus 374 fDvIi~D~~~~~------~~~~------~~L-----~t~ef~~~~~~~L----~pgG~lv~~~~~~~ 419 (521)
T PRK03612 374 FDVIIVDLPDPS------NPAL------GKL-----YSVEFYRLLKRRL----APDGLLVVQSTSPY 419 (521)
T ss_pred CCEEEEeCCCCC------Ccch------hcc-----chHHHHHHHHHhc----CCCeEEEEecCCcc
Confidence 999999987321 0110 000 1134566666665 99999998777643
No 169
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.28 E-value=1.8e-06 Score=87.05 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=69.0
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCC
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~ 248 (496)
..+..+++.+|++|||+|||+|..|..|+... ..|+|+|+++..++.+++++.. .++.++++|+..++.. .-
T Consensus 33 ~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~--~~ 104 (272)
T PRK00274 33 KIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLS--EL 104 (272)
T ss_pred HHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHH--Hc
Confidence 34456678899999999999999999999874 3899999999999999887743 6799999999887521 11
Q ss_pred CcCEEEECCCCCCC
Q 010971 249 TVDRVLLDAPCSGT 262 (496)
Q Consensus 249 ~fD~VLlDaPCSg~ 262 (496)
.+|.|+.++|+.-+
T Consensus 105 ~~~~vv~NlPY~is 118 (272)
T PRK00274 105 QPLKVVANLPYNIT 118 (272)
T ss_pred CcceEEEeCCccch
Confidence 15999999997543
No 170
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.27 E-value=1.7e-05 Score=81.79 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=57.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEecCCCCCccccCCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-----~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
+|.+|||+|||+|..+..++.. ...|+++|+|+..++.+++++...+ ..++.+...|...+ .+.||.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~ 215 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDT 215 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCE
Confidence 5789999999999999999874 2589999999999999999998763 23567777776543 268999
Q ss_pred EEE
Q 010971 253 VLL 255 (496)
Q Consensus 253 VLl 255 (496)
|++
T Consensus 216 Vv~ 218 (315)
T PLN02585 216 VTC 218 (315)
T ss_pred EEE
Confidence 986
No 171
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.27 E-value=3.6e-06 Score=82.53 Aligned_cols=133 Identities=26% Similarity=0.274 Sum_probs=100.7
Q ss_pred chhHHHhc------CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC
Q 010971 167 SFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~L------~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~ 240 (496)
|-|++-.| .++||.+||-|+||+|..-.|+++..++.|.|+|+|.+...=..|...+++- +||+.+..|++.
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArh 216 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARH 216 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCC
Confidence 44555444 3789999999999999999999999999999999999987777776666543 688889999987
Q ss_pred Cccc-cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHH-HHHHHHHHHhhhhcCCCCcEEEEE---eCCC
Q 010971 241 LPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQ-KQLILAAIDMVDANSKSGGYIVYS---TCSI 315 (496)
Q Consensus 241 ~~~~-~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ-~~LL~~A~~~l~~~lkpGG~LVYS---TCSi 315 (496)
..+. +--.-+|+||.|.|- | .| +-+..+|..+| ++||.+|.| .|+=
T Consensus 217 P~KYRmlVgmVDvIFaDvaq---------p----------------dq~RivaLNA~~FL----k~gGhfvisikancid 267 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVAQ---------P----------------DQARIVALNAQYFL----KNGGHFVISIKANCID 267 (317)
T ss_pred chheeeeeeeEEEEeccCCC---------c----------------hhhhhhhhhhhhhh----ccCCeEEEEEeccccc
Confidence 5332 111468999999871 1 12 23455676776 999999876 7888
Q ss_pred CCcCCHHHHHHHHHh
Q 010971 316 MVTENEAVIDYALKK 330 (496)
Q Consensus 316 ~~eENE~vV~~~L~~ 330 (496)
....+|.|-+.-.++
T Consensus 268 stv~ae~vFa~Ev~k 282 (317)
T KOG1596|consen 268 STVFAEAVFAAEVKK 282 (317)
T ss_pred ccccHHHHHHHHHHH
Confidence 888999987755443
No 172
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.26 E-value=7.4e-06 Score=80.09 Aligned_cols=120 Identities=17% Similarity=0.177 Sum_probs=95.5
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC-ccc
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKV 244 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~-~~~ 244 (496)
.++..+++..-...++||+|.-+|..++.+|-.++..|.|+|+|+++.-.+....-.+..|+.. |.++.+++.+- ++.
T Consensus 62 g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 62 GQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 4566666666667899999999999999999999999999999999999999999999999965 88888887542 222
Q ss_pred c---CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 245 L---GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 245 ~---~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
. ..+.||.+|+|+= -.++ ...+.++++++ |+||.|++-.-++
T Consensus 142 ~~~~~~~tfDfaFvDad---------------------K~nY----~~y~e~~l~Ll----r~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDAD---------------------KDNY----SNYYERLLRLL----RVGGVIVVDNVLW 186 (237)
T ss_pred HhcCCCCceeEEEEccc---------------------hHHH----HHHHHHHHhhc----ccccEEEEecccc
Confidence 2 3478999999973 0111 24578888987 9999999976554
No 173
>PLN02366 spermidine synthase
Probab=98.26 E-value=1.1e-05 Score=82.93 Aligned_cols=110 Identities=16% Similarity=0.219 Sum_probs=79.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC--C--CeEEEEecCCCCCccccCCCCcCEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V--TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g--~--~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
...+||++|+|.|+....++.. ++...|+.+|+++..++.+++.+...+ + .++.++..|+..+-.....+.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4679999999999998888765 444689999999999999999886643 3 3589999999876432223689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
++|.+-. .| | ... -...+.+..+.+.| +|||.+|.
T Consensus 170 i~D~~dp-~~-----~-------~~~-----L~t~ef~~~~~~~L----~pgGvlv~ 204 (308)
T PLN02366 170 IVDSSDP-VG-----P-------AQE-----LFEKPFFESVARAL----RPGGVVCT 204 (308)
T ss_pred EEcCCCC-CC-----c-------hhh-----hhHHHHHHHHHHhc----CCCcEEEE
Confidence 9998621 11 0 001 11245566666765 99999975
No 174
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.25 E-value=7.4e-06 Score=79.32 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=57.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..++.+|||+|||+|..+..|+..+++ +.|+|+|+|+..++.+++++ .++.+..+|+.. + +..+.||.|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~--~~~~sfD~V~~ 111 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-P--FKDNFFDLVLT 111 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-C--CCCCCEEEEEE
Confidence 456789999999999999999887643 78999999999999998764 245566778765 3 34478999996
No 175
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.24 E-value=1.4e-05 Score=90.73 Aligned_cols=112 Identities=15% Similarity=0.183 Sum_probs=82.7
Q ss_pred CCCCcccccccEEEeCCcchh---HHHhc---CC-CCCCeEeeccCCCchHHHHHHHHcC--------------------
Q 010971 149 IGATPEYMAGFYMLQSASSFL---PVMAL---AP-QEKERVIDMAAAPGGKTTYIAALMK-------------------- 201 (496)
Q Consensus 149 i~~~~~~~~G~~~iQd~sS~l---~v~~L---~~-~~g~~VLDmcAgpGgKT~~lA~l~~-------------------- 201 (496)
....+.++.|+=..+.++.+- ++.+| .. .++..++|-+||+|+..+..|.+..
T Consensus 154 ~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~ 233 (702)
T PRK11783 154 LSGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHD 233 (702)
T ss_pred CCCCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCC
Confidence 344567777865556665432 22122 22 5689999999999999887665421
Q ss_pred ---------------------CCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 202 ---------------------NTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 202 ---------------------~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
....|+|+|+++..+..++.|+..+|+.+ +.+.+.|+..++.....+.||.|++|||+
T Consensus 234 ~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 234 EALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence 11369999999999999999999999976 88999999887543323579999999996
Q ss_pred C
Q 010971 260 S 260 (496)
Q Consensus 260 S 260 (496)
-
T Consensus 314 g 314 (702)
T PRK11783 314 G 314 (702)
T ss_pred c
Confidence 3
No 176
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.22 E-value=3.3e-06 Score=81.81 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=78.5
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.+.+-.+|.|+|||||..|-.|++..+. ..|+++|.|+.+++.+.+++ .++.+..+|.+.+. +...+|+|+
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~---p~~~~dllf 97 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWK---PEQPTDLLF 97 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcC---CCCccchhh
Confidence 4556789999999999999999999975 79999999999999885544 56788889988774 236799998
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|- +.|-+++ -++|.+.+..| .|||.|..-
T Consensus 98 aNAv--------------lqWlpdH--------~~ll~rL~~~L----~Pgg~LAVQ 128 (257)
T COG4106 98 ANAV--------------LQWLPDH--------PELLPRLVSQL----APGGVLAVQ 128 (257)
T ss_pred hhhh--------------hhhcccc--------HHHHHHHHHhh----CCCceEEEE
Confidence 8763 3344443 24566666665 999999763
No 177
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.21 E-value=3.9e-06 Score=75.99 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=69.7
Q ss_pred HHhcC-CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC
Q 010971 171 VMALA-PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~-~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
..++. ..++.+|||+|||.|..+..++... ..++++|+++..+.. .++...+.+....+. ..+.
T Consensus 14 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~ 78 (161)
T PF13489_consen 14 ERLLPRLKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK----------RNVVFDNFDAQDPPF--PDGS 78 (161)
T ss_dssp HHHHTCTTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH----------TTSEEEEEECHTHHC--HSSS
T ss_pred HHHhcccCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh----------hhhhhhhhhhhhhhc--cccc
Confidence 33443 4678999999999999998886652 389999999999887 233333333333221 2378
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
||.|++- .++..-++ -..+|....++| +|||+++.++-..
T Consensus 79 fD~i~~~------~~l~~~~d----------------~~~~l~~l~~~L----kpgG~l~~~~~~~ 118 (161)
T PF13489_consen 79 FDLIICN------DVLEHLPD----------------PEEFLKELSRLL----KPGGYLVISDPNR 118 (161)
T ss_dssp EEEEEEE------SSGGGSSH----------------HHHHHHHHHHCE----EEEEEEEEEEEBT
T ss_pred hhhHhhH------HHHhhccc----------------HHHHHHHHHHhc----CCCCEEEEEEcCC
Confidence 9999972 22222221 134567777765 9999999987654
No 178
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=1.4e-05 Score=75.93 Aligned_cols=132 Identities=21% Similarity=0.244 Sum_probs=84.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-CCCCC------ccccCCCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNEL------PKVLGLNT 249 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~------~~~~~~~~ 249 (496)
.|+++|||+|||||.++...-+..++.|.|+++|+-. -..+..+.++.+ |.++. -+.++...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 5799999999999999999999998889999999742 122333334433 65542 12235578
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc-CCHHHHHHHH
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT-ENEAVIDYAL 328 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~e-ENE~vV~~~L 328 (496)
+|+||.|.---.+|+- ..|-..+..+=..+|.-|+.++ .|+|.+| |-+..- |.......+.
T Consensus 137 VdvVlSDMapnaTGvr-----------~~Dh~~~i~LC~s~l~~al~~~----~p~g~fv---cK~w~g~e~~~l~r~l~ 198 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVR-----------IRDHYRSIELCDSALLFALTLL----IPNGSFV---CKLWDGSEEALLQRRLQ 198 (232)
T ss_pred ccEEEeccCCCCcCcc-----------hhhHHHHHHHHHHHHHHhhhhc----CCCcEEE---EEEecCCchHHHHHHHH
Confidence 9999999665666643 2233334444455677777776 8999987 444433 3333444444
Q ss_pred HhC-CcEEee
Q 010971 329 KKR-DVKLVP 337 (496)
Q Consensus 329 ~~~-~~~lv~ 337 (496)
+.+ .|+.+.
T Consensus 199 ~~f~~Vk~vK 208 (232)
T KOG4589|consen 199 AVFTNVKKVK 208 (232)
T ss_pred HHhhhcEeeC
Confidence 443 455443
No 179
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.17 E-value=1.4e-05 Score=77.50 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=58.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.++.+|||+|||+|..+..+++.. ..|+++|+++..++.++.++...+. .++.+...|... . .+.||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~--~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---L--LGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---c--cCCcCEEEE
Confidence 467899999999999999888752 4699999999999999999998887 468888888322 1 267999987
No 180
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.16 E-value=2.5e-05 Score=76.55 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=60.1
Q ss_pred CCcchhHHHh--cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-------------
Q 010971 164 SASSFLPVMA--LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV------------- 228 (496)
Q Consensus 164 d~sS~l~v~~--L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~------------- 228 (496)
.+..++.... +.+.++.+|||++||.|--+.+||+. .-.|+|+|+++..++.+.. +.|+
T Consensus 21 ~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~ 94 (218)
T PRK13255 21 EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHY 94 (218)
T ss_pred CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCcccccccccccc
Confidence 4444554432 34456889999999999999999974 3589999999999997642 2222
Q ss_pred --CeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 229 --TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 229 --~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.+|.+.++|+..++... ...||.|+-
T Consensus 95 ~~~~v~~~~~D~~~l~~~~-~~~fd~v~D 122 (218)
T PRK13255 95 QAGEITIYCGDFFALTAAD-LADVDAVYD 122 (218)
T ss_pred ccCceEEEECcccCCCccc-CCCeeEEEe
Confidence 35778889988774321 257888863
No 181
>PRK05785 hypothetical protein; Provisional
Probab=98.13 E-value=9.5e-06 Score=79.70 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=53.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
++.+|||+|||+|..+.+++... .+.|+++|+|+.+++.++... ..+++|+..+| +.+++||.|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp--~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALP--FRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCC--CCCCCEEEEEe
Confidence 47899999999999999998875 369999999999999876531 23567888776 44589999987
No 182
>PRK06202 hypothetical protein; Provisional
Probab=98.10 E-value=8.5e-06 Score=79.77 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=57.4
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~---~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~ 249 (496)
.+...++.+|||+|||+|..+..|+..+.. ...|+|+|+++..++.++.+....++ .+...|+..++. ..+.
T Consensus 55 ~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~l~~--~~~~ 129 (232)
T PRK06202 55 ALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV---TFRQAVSDELVA--EGER 129 (232)
T ss_pred hcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC---eEEEEecccccc--cCCC
Confidence 344456789999999999999988876532 24899999999999999887655443 344444444442 2478
Q ss_pred cCEEEE
Q 010971 250 VDRVLL 255 (496)
Q Consensus 250 fD~VLl 255 (496)
||.|++
T Consensus 130 fD~V~~ 135 (232)
T PRK06202 130 FDVVTS 135 (232)
T ss_pred ccEEEE
Confidence 999997
No 183
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=5.2e-06 Score=75.87 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=66.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
-+|..++|+|||.|..+ ++..|...-.|+++|+++..|+...+|++.+.+. +.+++.|..++.. ..+.||.++.|
T Consensus 47 iEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~--~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLEL--KGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhc--cCCeEeeEEec
Confidence 47899999999999987 4455555679999999999999999999999885 4667777766542 23889999999
Q ss_pred CCCCCCCcccCC
Q 010971 257 APCSGTGVISKD 268 (496)
Q Consensus 257 aPCSg~G~i~r~ 268 (496)
|| .|+-.++
T Consensus 122 pp---FGTk~~~ 130 (185)
T KOG3420|consen 122 PP---FGTKKKG 130 (185)
T ss_pred CC---CCccccc
Confidence 99 4554443
No 184
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.08 E-value=9.1e-06 Score=80.94 Aligned_cols=83 Identities=17% Similarity=0.079 Sum_probs=67.5
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
...+..+++.++++|||+|||+|..|..|++.. ..|+++|+++..+..++.++.. ..++.++++|+..++.
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~---- 89 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL---- 89 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh----
Confidence 344556677889999999999999999999875 3599999999999999887743 4678999999987763
Q ss_pred CCcC---EEEECCCC
Q 010971 248 NTVD---RVLLDAPC 259 (496)
Q Consensus 248 ~~fD---~VLlDaPC 259 (496)
..|| .|+.+.|.
T Consensus 90 ~~~d~~~~vvsNlPy 104 (253)
T TIGR00755 90 PDFPKQLKVVSNLPY 104 (253)
T ss_pred hHcCCcceEEEcCCh
Confidence 2466 99998883
No 185
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.06 E-value=3.3e-05 Score=84.85 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=62.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-------CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc---ccCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-------TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-------~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~---~~~~ 247 (496)
.+.+|||.|||+|+..+.++..+.. .-.++++|+++..+..+..|+..++.-.+.+.+.|...... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3569999999999999988876632 13689999999999999999988873234444454332110 0012
Q ss_pred CCcCEEEECCCCCCCCc
Q 010971 248 NTVDRVLLDAPCSGTGV 264 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~ 264 (496)
+.||+|+.+||......
T Consensus 111 ~~fD~IIgNPPy~~~k~ 127 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKP 127 (524)
T ss_pred CcccEEEeCCCccccCc
Confidence 58999999999877643
No 186
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.06 E-value=1.3e-05 Score=82.14 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=75.7
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---CC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GL 247 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~~ 247 (496)
+.+|.+++|..++|+.+|-||-|..|+..+++ |.|+|+|.++..+..++++++.++ .++.+++.+...+...+ ..
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCC
Confidence 45677889999999999999999999998875 999999999999999999998763 46889999888775544 33
Q ss_pred CCcCEEEECCCCCCC
Q 010971 248 NTVDRVLLDAPCSGT 262 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~ 262 (496)
..||.||+|-=+|..
T Consensus 91 ~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 91 TKIDGILVDLGVSSP 105 (305)
T ss_pred CcccEEEEeccCCHh
Confidence 579999999877753
No 187
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.04 E-value=8.2e-06 Score=77.52 Aligned_cols=100 Identities=21% Similarity=0.205 Sum_probs=81.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaP 258 (496)
.+.+.|+|||+|-.+...|.. .-+|+|++.++.+...+.+|++-.|..|+.++++|++++. + ...|+|+|..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~--f--e~ADvvicEm- 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD--F--ENADVVICEM- 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc--c--cccceeHHHH-
Confidence 378999999999998877665 3589999999999999999999999999999999999875 3 5789998732
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE
Q 010971 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (496)
Q Consensus 259 CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV 309 (496)
-|..-+-..|...+.+++++| +..+.|+
T Consensus 105 -------------------lDTaLi~E~qVpV~n~vleFL----r~d~tii 132 (252)
T COG4076 105 -------------------LDTALIEEKQVPVINAVLEFL----RYDPTII 132 (252)
T ss_pred -------------------hhHHhhcccccHHHHHHHHHh----hcCCccc
Confidence 122334456777888888886 7777664
No 188
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.7e-05 Score=74.28 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=70.6
Q ss_pred HhcC--CCCCCeEeeccCCCchHHHHHHHHcCCCcEE-EEEeCCHHHHHHHHHHHHHcC----------CCeEEEEecCC
Q 010971 172 MALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMG----------VTNTIVCNYDG 238 (496)
Q Consensus 172 ~~L~--~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V-~A~D~s~~rl~~l~~nl~r~g----------~~nv~v~~~D~ 238 (496)
.+|. ++||...||+|+|+|-.|+.++.+++..|.+ +++|.-++-++..+.|+...- ..++.++.+|+
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 4455 7899999999999999999999888877765 999999999999999998754 23577889999
Q ss_pred CCCccccCCCCcCEEEECCC
Q 010971 239 NELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLlDaP 258 (496)
+..-... ..||+|.|-|-
T Consensus 154 r~g~~e~--a~YDaIhvGAa 171 (237)
T KOG1661|consen 154 RKGYAEQ--APYDAIHVGAA 171 (237)
T ss_pred cccCCcc--CCcceEEEccC
Confidence 9874433 78999999654
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.99 E-value=2.4e-05 Score=74.73 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=64.6
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~ 246 (496)
|..++..+... +.+|+|+|+|.|-=++.+|-+.+ ...++.+|.+..|+.-++.-+..+|++|+.+++..+.. + ..
T Consensus 38 SL~~~~~~~~~-~~~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~--~~ 112 (184)
T PF02527_consen 38 SLALLPFLPDF-GKKVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P--EY 112 (184)
T ss_dssp HHGGGGCS-CC-CSEEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T--TT
T ss_pred HHHhhhhhccC-CceEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c--cc
Confidence 44444444332 22899999999999999888775 47899999999999999999999999999999988776 1 12
Q ss_pred CCCcCEEEECC
Q 010971 247 LNTVDRVLLDA 257 (496)
Q Consensus 247 ~~~fD~VLlDa 257 (496)
...||.|+.=|
T Consensus 113 ~~~fd~v~aRA 123 (184)
T PF02527_consen 113 RESFDVVTARA 123 (184)
T ss_dssp TT-EEEEEEES
T ss_pred CCCccEEEeeh
Confidence 37899998743
No 190
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.98 E-value=0.00013 Score=73.83 Aligned_cols=129 Identities=14% Similarity=0.163 Sum_probs=91.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEecCCCCCccccC-CCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGNELPKVLG-LNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv-~v~~~D~~~~~~~~~-~~~fD~VL 254 (496)
..-+|||+|||+|---+-+....+. .-.|.-+|.++.-++..++.++..|+.++ .+.++|+.+...... ....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 3468999999999987766655543 35899999999999999999999999996 999999876533221 13568888
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~ 331 (496)
+ +|++.=-|+- + +-++.|.....++ .|||+|||+.=-+||. -+.|+.+|..|
T Consensus 215 V------sGL~ElF~Dn-------~------lv~~sl~gl~~al----~pgG~lIyTgQPwHPQ--le~IAr~LtsH 266 (311)
T PF12147_consen 215 V------SGLYELFPDN-------D------LVRRSLAGLARAL----EPGGYLIYTGQPWHPQ--LEMIARVLTSH 266 (311)
T ss_pred E------ecchhhCCcH-------H------HHHHHHHHHHHHh----CCCcEEEEcCCCCCcc--hHHHHHHHhcc
Confidence 7 4544222211 1 1122244444444 9999999988788873 45788888775
No 191
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.96 E-value=3e-05 Score=76.44 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=76.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-----C-----------------------
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-----T----------------------- 229 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-----~----------------------- 229 (496)
.+..+||+||-.|..|++||..++. ..|+++|+++.+++.++.++...-- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 4568999999999999999999865 6799999999999999999875311 1
Q ss_pred --------------eEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHH
Q 010971 230 --------------NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295 (496)
Q Consensus 230 --------------nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~ 295 (496)
|+++...|+. .+....||+||| ++---.|.++|..+.+ ++++.++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl----~~~~~~fDiIlc---------LSiTkWIHLNwgD~GL-------~~ff~kis 196 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL----DMIQPEFDIILC---------LSITKWIHLNWGDDGL-------RRFFRKIS 196 (288)
T ss_pred ccccCCcchhcccccEEEecchhh----hhccccccEEEE---------EEeeeeEecccccHHH-------HHHHHHHH
Confidence 1111111121 123368999997 1222234456766666 45677888
Q ss_pred HhhhhcCCCCcEEEE
Q 010971 296 DMVDANSKSGGYIVY 310 (496)
Q Consensus 296 ~~l~~~lkpGG~LVY 310 (496)
.+| .|||+||.
T Consensus 197 ~ll----~pgGiLvv 207 (288)
T KOG2899|consen 197 SLL----HPGGILVV 207 (288)
T ss_pred Hhh----CcCcEEEE
Confidence 876 99999986
No 192
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.93 E-value=6.4e-05 Score=72.05 Aligned_cols=71 Identities=21% Similarity=0.194 Sum_probs=54.4
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.||.+|||+|||.|..-.+|.+.. ....+++|++++.+..+.+ .| +.|+++|...--..+++++||.|++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~----rG---v~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVA----RG---VSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHH----cC---CCEEECCHHHhHhhCCCCCccEEeh
Confidence 4689999999999999888777753 4689999999988765543 24 4477888765444456789999987
No 193
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.93 E-value=9.4e-05 Score=75.47 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=78.6
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD 251 (496)
.+.+-.|.+|||+|||.|..+..|+.. +...|+++|.+..-+.....--+-+|... +..+..-...+|. . +.||
T Consensus 110 ~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~--~~FD 184 (315)
T PF08003_consen 110 HLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L--GAFD 184 (315)
T ss_pred hhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c--CCcC
Confidence 344567999999999999999887765 44689999999887766555445556554 3333233345554 3 7899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eEN 320 (496)
.||+ +||+-+. +++-+ .|....+.| +|||.||.=|--+.-+++
T Consensus 185 tVF~------MGVLYHr------r~Pl~----------~L~~Lk~~L----~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 185 TVFS------MGVLYHR------RSPLD----------HLKQLKDSL----RPGGELVLETLVIDGDEN 227 (315)
T ss_pred EEEE------eeehhcc------CCHHH----------HHHHHHHhh----CCCCEEEEEEeeecCCCc
Confidence 9997 7877542 22221 244444444 999999988877665554
No 194
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.91 E-value=8e-06 Score=88.86 Aligned_cols=110 Identities=25% Similarity=0.257 Sum_probs=71.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC------CccccCCCC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE------LPKVLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~------~~~~~~~~~ 249 (496)
++++..|||+||||||+....++.|+-.+.|+++|+-+-+ -+.|+.....|.+. +-..+....
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999988899999997732 23444444444432 112223346
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.|+||-|.. |.+-..|..+. ..|-.|...|+++....|..||.+|.-
T Consensus 111 advVLhDga----------pnVg~~w~~DA-----~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 111 ADVVLHDGA----------PNVGGNWVQDA-----FQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred CcEEeecCC----------CccchhHHHHH-----HHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 799999953 22223343332 344455555555555555999997653
No 195
>PLN02823 spermine synthase
Probab=97.82 E-value=0.00015 Score=75.56 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=61.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
..+||-+|+|.|+.+..+.... ....|+++|+++..++.+++.+...+ -.++.++..|++.+-... .+.||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEE
Confidence 4689999999999887776642 33589999999999999999876432 246899999998874332 36899999
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
+|++
T Consensus 182 ~D~~ 185 (336)
T PLN02823 182 GDLA 185 (336)
T ss_pred ecCC
Confidence 9974
No 196
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.80 E-value=3.6e-05 Score=81.36 Aligned_cols=105 Identities=26% Similarity=0.318 Sum_probs=76.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n--v~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.+-+|||.-||+|--++-.+.-..+...|++||+|+..++.++.|++.+|+.. +.+.+.|+..+-. .....||.|=+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCEEEe
Confidence 35689999999999999988887666799999999999999999999999986 8888899876532 13478999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
||= |+- --.|..|++.+ +.||.| |.|||
T Consensus 128 DPf--GSp------------------------~pfldsA~~~v----~~gGll-~vTaT 155 (377)
T PF02005_consen 128 DPF--GSP------------------------APFLDSALQAV----KDGGLL-CVTAT 155 (377)
T ss_dssp --S--S--------------------------HHHHHHHHHHE----EEEEEE-EEEE-
T ss_pred CCC--CCc------------------------cHhHHHHHHHh----hcCCEE-EEecc
Confidence 973 221 12589999997 777755 66776
No 197
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.78 E-value=0.00011 Score=80.10 Aligned_cols=167 Identities=23% Similarity=0.240 Sum_probs=106.3
Q ss_pred cEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEE
Q 010971 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVT-NTIVC 234 (496)
Q Consensus 159 ~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~---~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~ 234 (496)
+|+.+ .-+.+.+.+|.|.+..+|+|-|||+||.-+..+..++. ...+++.|++......++-|+--.|+. ++.+.
T Consensus 168 fyTP~-~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~ 246 (489)
T COG0286 168 FYTPR-EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIR 246 (489)
T ss_pred cCChH-HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccc
Confidence 34444 44667788898899999999999999999988888753 378999999999999999999988887 45666
Q ss_pred ecCCCCCcccc---CCCCcCEEEECCCCCCCCcccCC-chhh-ccCCHHHHHHHHHHH-HHHHHHHHHhhhhcCCCCcE-
Q 010971 235 NYDGNELPKVL---GLNTVDRVLLDAPCSGTGVISKD-ESVK-TSKSLEDIQKCSYLQ-KQLILAAIDMVDANSKSGGY- 307 (496)
Q Consensus 235 ~~D~~~~~~~~---~~~~fD~VLlDaPCSg~G~i~r~-p~~k-~~~s~~~i~~l~~lQ-~~LL~~A~~~l~~~lkpGG~- 307 (496)
++|...-|... ....||.|+.+||.|+.|...-. .... +.............. ...+.+.+..+ +|||+
T Consensus 247 ~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l----~~~g~a 322 (489)
T COG0286 247 HGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKL----KPGGRA 322 (489)
T ss_pred ccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhc----CCCceE
Confidence 66654444331 23679999999999976544321 0000 000000000000001 33466667765 77653
Q ss_pred -EEEEeCCCCCcCCHHHHHHHHHh
Q 010971 308 -IVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 308 -LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
||...-.++..-++..|...|-.
T Consensus 323 aivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 323 AIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred EEEecCCcCcCCCchHHHHHHHHh
Confidence 23333334444468777755443
No 198
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.77 E-value=0.0001 Score=72.04 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=64.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCC-cCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT-VDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~-fD~VLlDa 257 (496)
+.+|+|+|||+|-=++.+|-.. +...|+-+|....|+.-|+.-.+.+|++|+.++++.+..+.... . ||.|.+=|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~---~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEK---KQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccccc---ccCcEEEeeh
Confidence 6899999999999999998544 45679999999999999999999999999999999988876432 3 99998743
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00013 Score=73.18 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=74.3
Q ss_pred hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
.-.+.+.++.+++.||++|+|.|+.|..|++.. ..|+|+|+|+..+..|.+.+. ...|+.++++|+..++-.. .
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~-l 93 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS-L 93 (259)
T ss_pred HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh-h
Confidence 455778888999999999999999999999874 579999999999999988876 4568999999998875210 0
Q ss_pred CCcCEEEECCCCCCCC
Q 010971 248 NTVDRVLLDAPCSGTG 263 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G 263 (496)
..+++|+.+-|+.-+.
T Consensus 94 ~~~~~vVaNlPY~Iss 109 (259)
T COG0030 94 AQPYKVVANLPYNISS 109 (259)
T ss_pred cCCCEEEEcCCCcccH
Confidence 1689999999987553
No 200
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.75 E-value=1.6e-05 Score=77.19 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=70.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcccc--CCCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~--~~~~fD~VL 254 (496)
.-+.|+|.+||-||-|++.|... ..|+++|+++-++..+++|++-+|+.+ |.++++|..++...+ ....+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 45789999999999999877653 579999999999999999999999986 899999987653332 112467999
Q ss_pred ECCCCCCCCccc
Q 010971 255 LDAPCSGTGVIS 266 (496)
Q Consensus 255 lDaPCSg~G~i~ 266 (496)
+-||=+|.|..+
T Consensus 171 ~sppwggp~y~~ 182 (263)
T KOG2730|consen 171 LSPPWGGPSYLR 182 (263)
T ss_pred cCCCCCCcchhh
Confidence 999999988554
No 201
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.73 E-value=9.7e-05 Score=76.79 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=68.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-------C---CeEEEEecCCCCC--cccc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-------V---TNTIVCNYDGNEL--PKVL 245 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-------~---~nv~v~~~D~~~~--~~~~ 245 (496)
++.+|||||||-||=..=.... +.+.++++|++..-++.++++...+. . -...++..|...- ...+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999999965533332 45799999999999999999884332 1 1245667776532 1222
Q ss_pred CC--CCcCEEEECCCCCCCCcccCCchhhccC-CHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 246 GL--NTVDRVLLDAPCSGTGVISKDESVKTSK-SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 246 ~~--~~fD~VLlDaPCSg~G~i~r~p~~k~~~-s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.. ..||+|=|=- .+.+.. +++. -+.+|.++...| +|||+++-+|.+
T Consensus 140 ~~~~~~FDvVScQF------------alHY~Fese~~-------ar~~l~Nvs~~L----k~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQF------------ALHYAFESEEK-------ARQFLKNVSSLL----KPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-------------GGGGGSSHHH-------HHHHHHHHHHTE----EEEEEEEEEEE-
T ss_pred cccCCCcceeehHH------------HHHHhcCCHHH-------HHHHHHHHHHhc----CCCCEEEEEecC
Confidence 22 4899995510 011111 2222 255788888886 999999987755
No 202
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.72 E-value=0.00016 Score=71.46 Aligned_cols=130 Identities=17% Similarity=0.212 Sum_probs=73.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~~~fD~VLlD 256 (496)
.|.+||=+ |=+-.++..+++.+....|+.+|++..-+..+...+++.|+. +....+|.+.- |..+ .+.||.++.|
T Consensus 44 ~gk~il~l--GDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~-~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFL--GDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL-RGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEE--S-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT-SS-BSEEEE-
T ss_pred cCCEEEEE--cCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH-hcCCCEEEeC
Confidence 57888744 455555544455555579999999999999999999999998 99999999864 5443 3899999999
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC-CH-HHHHHHHHhCCcE
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE-NE-AVIDYALKKRDVK 334 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE-NE-~vV~~~L~~~~~~ 334 (496)
||.+..|+ .-.|.+++..| +.-|..+|-.++..+.- .+ ..++.++-..++-
T Consensus 120 PPyT~~G~-----------------------~LFlsRgi~~L----k~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 120 PPYTPEGL-----------------------KLFLSRGIEAL----KGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp --SSHHHH-----------------------HHHHHHHHHTB-----STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred CCCCHHHH-----------------------HHHHHHHHHHh----CCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 99665442 22578888887 54454556655554311 11 2466666677877
Q ss_pred Eeec
Q 010971 335 LVPC 338 (496)
Q Consensus 335 lv~~ 338 (496)
+.++
T Consensus 173 i~di 176 (243)
T PF01861_consen 173 ITDI 176 (243)
T ss_dssp EEEE
T ss_pred HHHH
Confidence 7666
No 203
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.71 E-value=0.00077 Score=70.05 Aligned_cols=169 Identities=20% Similarity=0.193 Sum_probs=97.2
Q ss_pred HHHHHHhCC-HHHHHHHHHHcCC--CCCeEEEEcCCCCCHH------------HHHHHHHHcCCccCCCCcCCcc-cEEE
Q 010971 79 IGALVEMFP-PVELMELIESFEK--PRPICLRTNTLKTRRR------------DLADVLINRGVNLDPLSKWSKV-GLVV 142 (496)
Q Consensus 79 ~~~l~~~~~-~~e~~~~lea~~~--~~P~~iRvNtlk~~~~------------~l~~~L~~~Gv~~~p~~~~~~~-gl~v 142 (496)
+......+| .+..-.+++++.. +.--.+||.|..++.. .|.++|...|+......+-.+. .+.+
T Consensus 73 ~~~~~~~lp~~DRi~pi~~~~~~~~~~~~~l~vE~pDtne~k~l~~fcrkf~~pLr~aL~~~g~l~~~~~~~~p~lh~~f 152 (357)
T PRK11760 73 VGELLKDLPPEDRISPIVAALQGVVPKFGELRVETPDTNEGKELSKFCRKFTVPLRQALRKAGVLTAKENPKRPVLHVFF 152 (357)
T ss_pred hhhHhhcCCcccchHHHHHHHhhcccccceeEEecCCCccchHHHHHHHHhHHHHHHHHHhCCccCCccCCCCcEEEEEE
Confidence 344555555 4566678888753 3334689887776532 3456788888865432111111 1111
Q ss_pred ecCC-C-----CCCCCcccccccEEEeCC---cchhH---HHh---cC--------CCCCCeEeeccCCCchHHHHHHHH
Q 010971 143 YDSQ-V-----PIGATPEYMAGFYMLQSA---SSFLP---VMA---LA--------PQEKERVIDMAAAPGGKTTYIAAL 199 (496)
Q Consensus 143 ~~~~-~-----~i~~~~~~~~G~~~iQd~---sS~l~---v~~---L~--------~~~g~~VLDmcAgpGgKT~~lA~l 199 (496)
.++. . ....+..|-.|.--+..+ -|.-. ..+ +. +.+|.+|||+||+|||+|-.+.+.
T Consensus 153 ~~~~~~~vG~s~~~~~s~~~~Gi~Rl~~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r 232 (357)
T PRK11760 153 IAPGCCYVGYSYSNNSSPWPMGIPRLKFPADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR 232 (357)
T ss_pred EeCCEEEEEeccCCCCCcCCCCcccccCCCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc
Confidence 1110 0 012333444554433332 22211 111 11 368999999999999999988876
Q ss_pred cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 200 MKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 200 ~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
.+.|+|+|..+ +...+ +.-.+|.....|+..+... ...+|.|+||.-|
T Consensus 233 ---G~~V~AVD~g~-----l~~~L--~~~~~V~h~~~d~fr~~p~--~~~vDwvVcDmve 280 (357)
T PRK11760 233 ---GMFVTAVDNGP-----MAQSL--MDTGQVEHLRADGFKFRPP--RKNVDWLVCDMVE 280 (357)
T ss_pred ---CCEEEEEechh-----cCHhh--hCCCCEEEEeccCcccCCC--CCCCCEEEEeccc
Confidence 35999999554 22223 3345688888887665322 3789999999864
No 204
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00032 Score=66.62 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=90.3
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaP 258 (496)
...+|++|||+|-.++++++...+....+|.|+|+..++...+.+..+++. +.++..|...- +..+++|+++.+||
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~---l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSG---LRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhh---hccCCccEEEECCC
Confidence 578999999999999999999887778899999999999999999988875 55556665432 23389999999999
Q ss_pred CCCCC--ccc-CCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCC
Q 010971 259 CSGTG--VIS-KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 259 CSg~G--~i~-r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~ 332 (496)
+--+- -+. ..-...|.-. ..-+.+....+..|...|.|.|.+...+|.-+ -.++++. +++..+
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG--------~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--~p~ei~k-~l~~~g 185 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGG--------KDGREVTDRLLPQVPDILSPRGVFYLVALRAN--KPKEILK-ILEKKG 185 (209)
T ss_pred cCcCCcccchhHHHHHHHhcC--------cchHHHHHHHHhhhhhhcCcCceEEeeehhhc--CHHHHHH-HHhhcc
Confidence 75331 000 0001111100 11122233333333333589998887766543 2334444 666654
No 205
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.70 E-value=1.6e-05 Score=68.18 Aligned_cols=75 Identities=13% Similarity=0.287 Sum_probs=26.0
Q ss_pred eeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEECCC
Q 010971 183 IDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 183 LDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLlDaP 258 (496)
|++|++.|..|++|++.++..+ .++++|..+. .+...+.+++.++. ++.++.+|...+-..+....||.|++|++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 5789999999999998887655 7999999996 44555566656664 58999998865422232368999999986
No 206
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.70 E-value=0.00024 Score=69.32 Aligned_cols=140 Identities=18% Similarity=0.183 Sum_probs=86.7
Q ss_pred cEEEeCCcchhHHHhcCCCC--CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec
Q 010971 159 FYMLQSASSFLPVMALAPQE--KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 159 ~~~iQd~sS~l~v~~L~~~~--g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
...||-+-+..+..+|++.+ ..-|||++||+|-.+..|.+- .-..+++|+|+.+|+.+.+ ..+. .. ++..
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~--~e~e-gd--lil~ 100 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVE--RELE-GD--LILC 100 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHH--hhhh-cC--eeee
Confidence 35577776666677777665 678999999999988766553 2378899999999999986 2222 12 2334
Q ss_pred CC-CCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHH---HHHHHHHhhhhcCCCCcEEEEEe
Q 010971 237 DG-NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ---LILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 237 D~-~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~---LL~~A~~~l~~~lkpGG~LVYST 312 (496)
|+ .-+| +.++.||-||.= |. +-|..+.. ..+..-+++ .+.....+ |++|++-|+
T Consensus 101 DMG~Glp--frpGtFDg~ISI---SA---------vQWLcnA~--~s~~~P~~Rl~~FF~tLy~~----l~rg~raV~-- 158 (270)
T KOG1541|consen 101 DMGEGLP--FRPGTFDGVISI---SA---------VQWLCNAD--KSLHVPKKRLLRFFGTLYSC----LKRGARAVL-- 158 (270)
T ss_pred ecCCCCC--CCCCccceEEEe---ee---------eeeecccC--ccccChHHHHHHHhhhhhhh----hccCceeEE--
Confidence 43 3334 456899998751 11 11111110 011111222 23333344 499999887
Q ss_pred CCCCCcCCHHHHHHHHHh
Q 010971 313 CSIMVTENEAVIDYALKK 330 (496)
Q Consensus 313 CSi~~eENE~vV~~~L~~ 330 (496)
-+..||++.++.++..
T Consensus 159 --QfYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 159 --QFYPENEAQIDMIMQQ 174 (270)
T ss_pred --EecccchHHHHHHHHH
Confidence 4567999999988865
No 207
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.64 E-value=9.5e-05 Score=76.05 Aligned_cols=143 Identities=19% Similarity=0.201 Sum_probs=93.9
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHH-------HHHHHHHHcCCCe--EEEEecC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLK-------SLTANLHRMGVTN--TIVCNYD 237 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~-------~l~~nl~r~g~~n--v~v~~~D 237 (496)
|++.+....+.||+.|+|=+.|+|+.-...|.. .+.|++-|++-..+. .+..|++.+|+.. +-++.+|
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 334444445789999999999999986654443 378999999887776 5789999999754 5677888
Q ss_pred CCCCccccCCCCcCEEEECCCCCCC---CcccCCchhhcc--------CCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 238 GNELPKVLGLNTVDRVLLDAPCSGT---GVISKDESVKTS--------KSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 238 ~~~~~~~~~~~~fD~VLlDaPCSg~---G~i~r~p~~k~~--------~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
...-+-. ....||.|+||||+--- -.+.++-.++.. ........+..+--.||.-+.+.| .-||
T Consensus 274 ~sn~~~r-sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L----~~gg 348 (421)
T KOG2671|consen 274 FSNPPLR-SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL----VDGG 348 (421)
T ss_pred ccCcchh-hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh----hcCc
Confidence 8775543 35689999999997321 111111111111 011223445555566777777765 9999
Q ss_pred EEEEEeCCCCCcCCH
Q 010971 307 YIVYSTCSIMVTENE 321 (496)
Q Consensus 307 ~LVYSTCSi~~eENE 321 (496)
++|+ |.|--+|
T Consensus 349 rlv~----w~p~~~e 359 (421)
T KOG2671|consen 349 RLVF----WLPTITE 359 (421)
T ss_pred eEEE----ecCchhh
Confidence 9997 5554444
No 208
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=5.3e-05 Score=81.07 Aligned_cols=107 Identities=22% Similarity=0.328 Sum_probs=86.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCcc--ccCCCCcCEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPK--VLGLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~--~~~~~~fD~V 253 (496)
.++-+|||.-+|+|--++..|..+++-+.|+|||.++..++..+.|++.+++.+ ++....|+..+-- ......||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 457899999999999999999999998899999999999999999999999987 5677788765411 1112689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
=+||= |+- -..|+.|++.+ +.||. ++.|||
T Consensus 188 DLDPy--Gs~------------------------s~FLDsAvqav----~~gGL-L~vT~T 217 (525)
T KOG1253|consen 188 DLDPY--GSP------------------------SPFLDSAVQAV----RDGGL-LCVTCT 217 (525)
T ss_pred ecCCC--CCc------------------------cHHHHHHHHHh----hcCCE-EEEEec
Confidence 99984 221 12589999998 88875 577887
No 209
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.62 E-value=0.00012 Score=72.18 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=36.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHH-HHHH
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS-LTAN 222 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~-l~~n 222 (496)
.+|.+|||+|||||+.|..+++. +.+.|+|+|+++..+.. ++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC
Confidence 36889999999999999999885 35789999999987764 4443
No 210
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.60 E-value=0.00043 Score=65.97 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=51.3
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC-CccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~-~~~~~~~~~fD~VLl 255 (496)
.++.+|||+|||+|..+..++... ...++++|+++..++.+.. . ++.++..|+.. ++. +..++||.|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~-~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEA-FPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccc-cCCCCcCEEEE
Confidence 468899999999999998887653 2467999999988877643 2 34566677654 222 23468999998
Q ss_pred CC
Q 010971 256 DA 257 (496)
Q Consensus 256 Da 257 (496)
..
T Consensus 82 ~~ 83 (194)
T TIGR02081 82 SQ 83 (194)
T ss_pred hh
Confidence 43
No 211
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.58 E-value=0.00023 Score=67.12 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=50.0
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CeEEEEecCCCC-C-ccccCCCCcC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V-TNTIVCNYDGNE-L-PKVLGLNTVD 251 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g--~-~nv~v~~~D~~~-~-~~~~~~~~fD 251 (496)
..|.+||++|||.|--++.++.+. +...|++-|.++ -+..++.|++.++ . .++.+...|=.. . ........||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 468899999999999888888774 446899999999 9999999999987 2 346665544222 1 2223345899
Q ss_pred EEEE
Q 010971 252 RVLL 255 (496)
Q Consensus 252 ~VLl 255 (496)
+||.
T Consensus 122 ~Ila 125 (173)
T PF10294_consen 122 VILA 125 (173)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 212
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.57 E-value=0.00038 Score=67.37 Aligned_cols=123 Identities=14% Similarity=0.195 Sum_probs=87.3
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEE-EEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~-v~~~D~~~~~~~~~~~~fD~V 253 (496)
.......||+++||||.-=-+.- +.+..+|+++|.++.+-+.+...+......++. ++.+|+..++.. .++++|.|
T Consensus 73 gk~~K~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l-~d~s~DtV 149 (252)
T KOG4300|consen 73 GKSGKGDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL-ADGSYDTV 149 (252)
T ss_pred cccCccceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc-ccCCeeeE
Confidence 33445678999999997543221 124469999999999999999999888666776 899999999864 46899999
Q ss_pred EEC-CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 254 LLD-APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 254 LlD-aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
++- .=||-. -+.+.|.+.-++| +|||++++-. +..+.-....++|+.
T Consensus 150 V~TlvLCSve-----------------------~~~k~L~e~~rlL----RpgG~iifiE---Hva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 150 VCTLVLCSVE-----------------------DPVKQLNEVRRLL----RPGGRIIFIE---HVAGEYGFWNRILQQ 197 (252)
T ss_pred EEEEEEeccC-----------------------CHHHHHHHHHHhc----CCCcEEEEEe---cccccchHHHHHHHH
Confidence 863 234432 1345577766765 9999998853 344444556666654
No 213
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.56 E-value=0.00042 Score=71.71 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=81.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.+..|||+|||+|-.++..|.. +...|+|+|.+.-. ..+.+.+..+|+.+ |.++.+...++. ++..++|+|+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~--LP~eKVDiIvSE 134 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE--LPVEKVDIIVSE 134 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe--cCccceeEEeeh
Confidence 5889999999999999877765 35799999988765 88999999999988 677777665542 223789999862
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~ 317 (496)
| ....-+...+|...+-.=+..|+|||.+.=++|+++.
T Consensus 135 ------------------W-----MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l 172 (346)
T KOG1499|consen 135 ------------------W-----MGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYL 172 (346)
T ss_pred ------------------h-----hhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEE
Confidence 1 1122233334555554445568999999989998654
No 214
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.55 E-value=0.001 Score=65.46 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=83.8
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCc
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~f 250 (496)
....+..+..+|||+|.|.|..+..++...++ -+++..|. +.-++.+.+ ..+|.++.+|... .++ . +
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~---~~P-~-~ 159 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD---PLP-V-A 159 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH------TTTEEEEES-TTT---CCS-S-E
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc------ccccccccccHHh---hhc-c-c
Confidence 34455666779999999999999999999875 68999998 666666666 5679999999862 232 3 9
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC--cEEEEEeCCCCCcCCHHH
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG--GYIVYSTCSIMVTENEAV 323 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG--G~LVYSTCSi~~eENE~v 323 (496)
|+|++ ..+...|+.++. ..||+++...+ +|| |+|+.....+.....+..
T Consensus 160 D~~~l-------------~~vLh~~~d~~~-------~~iL~~~~~al----~pg~~g~llI~e~~~~~~~~~~~ 210 (241)
T PF00891_consen 160 DVYLL-------------RHVLHDWSDEDC-------VKILRNAAAAL----KPGKDGRLLIIEMVLPDDRTGPP 210 (241)
T ss_dssp SEEEE-------------ESSGGGS-HHHH-------HHHHHHHHHHS----EECTTEEEEEEEEEECSSSSSHH
T ss_pred cceee-------------ehhhhhcchHHH-------HHHHHHHHHHh----CCCCCCeEEEEeeccCCCCCCch
Confidence 99998 234456666665 56788998886 999 999998887665554443
No 215
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.52 E-value=5.5e-05 Score=77.64 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=64.2
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC----
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG---- 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~---- 246 (496)
+.+|.++++..+||+.-|.||.|..|.+..++ |.|+|+|.|+..+..+.++++.. -.++.+++.++..+...+.
T Consensus 13 l~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 13 LEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp HHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTT
T ss_pred HHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccC
Confidence 56677999999999999999999999999887 99999999999999998888765 3468889988877754432
Q ss_pred CCCcCEEEECCCCCC
Q 010971 247 LNTVDRVLLDAPCSG 261 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg 261 (496)
...+|-||+|-=+|.
T Consensus 91 ~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 91 INKVDGILFDLGVSS 105 (310)
T ss_dssp TS-EEEEEEE-S--H
T ss_pred CCccCEEEEccccCH
Confidence 258999999988774
No 216
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.52 E-value=0.0007 Score=66.82 Aligned_cols=114 Identities=8% Similarity=-0.041 Sum_probs=74.3
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH------------HHcCCCeEEEEecCCCCCc
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL------------HRMGVTNTIVCNYDGNELP 242 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl------------~r~g~~nv~v~~~D~~~~~ 242 (496)
.+.+|.+||+.+||.|--..+||+. .-.|+|+|+|+..++.+.+.. .+..-.++.+.++|...++
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3446789999999999999999885 247999999999999875521 1122236889999998875
Q ss_pred cc-cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 243 KV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 243 ~~-~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.. ...+.||.|.- |...-. ..++. -.+...+...+| +|||.++..|-..
T Consensus 117 ~~~~~~~~fD~VyD---ra~~~A----------lpp~~-------R~~Y~~~l~~lL----~pgg~llll~~~~ 166 (226)
T PRK13256 117 KIANNLPVFDIWYD---RGAYIA----------LPNDL-------RTNYAKMMLEVC----SNNTQILLLVMEH 166 (226)
T ss_pred ccccccCCcCeeee---ehhHhc----------CCHHH-------HHHHHHHHHHHh----CCCcEEEEEEEec
Confidence 21 11257999753 111111 11111 122345555554 9999998877543
No 217
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.48 E-value=0.00027 Score=69.40 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=82.9
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..+-.++||+|||+|-.+-.|-.+. ..++++|+|..+++.+.+. |+-. .+.+.|+..|........||+|..
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH-HHHHHHHHHHhhhccCCcccchhh
Confidence 3445899999999999998887775 4799999999999876543 2211 122334433433233478999842
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC------------CHHH
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE------------NEAV 323 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE------------NE~v 323 (496)
.++.....--..++-.+...| .|||.+.||.=++-.+- .+.-
T Consensus 195 ----------------------aDVl~YlG~Le~~~~~aa~~L----~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~Y 248 (287)
T COG4976 195 ----------------------ADVLPYLGALEGLFAGAAGLL----APGGLFAFSVETLPDDGGFVLGPSQRYAHSESY 248 (287)
T ss_pred ----------------------hhHHHhhcchhhHHHHHHHhc----CCCceEEEEecccCCCCCeecchhhhhccchHH
Confidence 333333333344666666665 99999999987764432 3455
Q ss_pred HHHHHHhCCcEEeec
Q 010971 324 IDYALKKRDVKLVPC 338 (496)
Q Consensus 324 V~~~L~~~~~~lv~~ 338 (496)
|...|+..+++++.+
T Consensus 249 Vr~~l~~~Gl~~i~~ 263 (287)
T COG4976 249 VRALLAASGLEVIAI 263 (287)
T ss_pred HHHHHHhcCceEEEe
Confidence 556666666666654
No 218
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=4.4e-05 Score=75.18 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=61.9
Q ss_pred ccccccEEEeCCcchhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Q 010971 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTI 232 (496)
Q Consensus 154 ~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~ 232 (496)
-|+.-+|..++-...+++.- .+-++||.+|||.|....-|.+-.++. -.|+|+|.++..+..++.+....- .++.
T Consensus 50 FfkdR~wL~~Efpel~~~~~---~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~ 125 (264)
T KOG2361|consen 50 FFKDRNWLLREFPELLPVDE---KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVE 125 (264)
T ss_pred ccchhHHHHHhhHHhhCccc---cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhc
Confidence 35666677766433332211 122389999999999998888766553 489999999999999998876543 2333
Q ss_pred EEecCCC--CCccccCCCCcCEEEE
Q 010971 233 VCNYDGN--ELPKVLGLNTVDRVLL 255 (496)
Q Consensus 233 v~~~D~~--~~~~~~~~~~fD~VLl 255 (496)
....|.. .+......+++|.|.+
T Consensus 126 afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 126 AFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred ccceeccchhccCCCCcCccceEEE
Confidence 3333432 2222234467776644
No 219
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.45 E-value=0.00019 Score=72.54 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=59.5
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCCC
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCS 260 (496)
+|+|+|||.||.+..+.+. +--.|+|+|+++..++..+.|.... +.+.|...+........+|+|+.+|||.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 6999999999998877654 3357899999999999999887432 4556766654221025799999999998
Q ss_pred CCCcccC
Q 010971 261 GTGVISK 267 (496)
Q Consensus 261 g~G~i~r 267 (496)
+.....+
T Consensus 74 ~fS~ag~ 80 (275)
T cd00315 74 PFSIAGK 80 (275)
T ss_pred hhhHHhh
Confidence 8766554
No 220
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.45 E-value=0.00055 Score=68.28 Aligned_cols=134 Identities=15% Similarity=0.150 Sum_probs=87.7
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEecCCCCCccccC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----TNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~----~nv~v~~~D~~~~~~~~~ 246 (496)
++++.+ ...+||=+|.|.|+.+..+...- .-..|+++|+++.-++.++.-+..... .++.++..|+..+-....
T Consensus 70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 70 PLLLHP-NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHSS-ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred HhhcCC-CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 333444 56799999999999887776542 236899999999999999988776433 368999999988754433
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
...||+|++|++= ..|.. .. ..+ .+.+..+.+.| +|||.++.-..|. ..++..+..
T Consensus 148 ~~~yDvIi~D~~d-p~~~~-----~~-l~t-----------~ef~~~~~~~L----~~~Gv~v~~~~~~--~~~~~~~~~ 203 (246)
T PF01564_consen 148 EEKYDVIIVDLTD-PDGPA-----PN-LFT-----------REFYQLCKRRL----KPDGVLVLQAGSP--FLHPELFKS 203 (246)
T ss_dssp ST-EEEEEEESSS-TTSCG-----GG-GSS-----------HHHHHHHHHHE----EEEEEEEEEEEET--TTTHHHHHH
T ss_pred CCcccEEEEeCCC-CCCCc-----cc-ccC-----------HHHHHHHHhhc----CCCcEEEEEccCc--ccchHHHHH
Confidence 2289999999873 22211 00 112 34456666665 9999998765333 345666665
Q ss_pred HHHh
Q 010971 327 ALKK 330 (496)
Q Consensus 327 ~L~~ 330 (496)
+.+.
T Consensus 204 i~~t 207 (246)
T PF01564_consen 204 ILKT 207 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 221
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.37 E-value=0.0007 Score=73.19 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=78.3
Q ss_pred CCeEeeccCCCchHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~---~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
+-.|||+|||+|-.+...++.. +....|+|+|.|+.....++..++..|.. .|.++++|++.+... ..+|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---CceeEEE
Confidence 4689999999999986655442 34469999999999999999988999985 499999999998532 5899998
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC--CCCcCCHHHHHH
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS--IMVTENEAVIDY 326 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS--i~~eENE~vV~~ 326 (496)
..- +|.+.-+. ++ -+.|..+-++ |+|||.++=+.++ +.|-+.+..-..
T Consensus 264 SEl----LGsfg~nE-------------l~---pE~Lda~~rf----Lkp~Gi~IP~~~t~ylaPiss~~l~~~ 313 (448)
T PF05185_consen 264 SEL----LGSFGDNE-------------LS---PECLDAADRF----LKPDGIMIPSSYTSYLAPISSPKLYQE 313 (448)
T ss_dssp E-------BTTBTTT-------------SH---HHHHHHGGGG----EEEEEEEESSEEEEEEEEEE-HHHHHH
T ss_pred Eec----cCCccccc-------------cC---HHHHHHHHhh----cCCCCEEeCcchhhEEEEeeCHHHHHH
Confidence 743 23222111 11 1235555555 4999999733333 445555554443
No 222
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.37 E-value=0.002 Score=60.51 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=83.4
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCCCCc
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLNTV 250 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~~~f 250 (496)
.++..|--||++|.|+|-.|-.|...+-....++++|.|++-...|.+.. ..+.++++|+..+... .....|
T Consensus 44 I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 44 IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCee
Confidence 46788999999999999999998888776779999999999888776543 3355788888665421 234679
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
|.|++-.|-- +... +.-.+||+.+...+ ++||-||--|-+
T Consensus 119 D~viS~lPll-------------~~P~-------~~~iaile~~~~rl----~~gg~lvqftYg 158 (194)
T COG3963 119 DSVISGLPLL-------------NFPM-------HRRIAILESLLYRL----PAGGPLVQFTYG 158 (194)
T ss_pred eeEEeccccc-------------cCcH-------HHHHHHHHHHHHhc----CCCCeEEEEEec
Confidence 9999877721 1111 11245788888876 999999987777
No 223
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.35 E-value=0.00052 Score=69.89 Aligned_cols=90 Identities=22% Similarity=0.301 Sum_probs=76.0
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---C
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---G 246 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~ 246 (496)
++.+|.+.|+...||+.-|-||.|-.|...++..|.++|+|.++..++.+++.+..++ .++.+++..+..+...+ .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcC
Confidence 3567889999999999999999999999999888999999999999999999999887 57888888776664333 2
Q ss_pred CCCcCEEEECCCCC
Q 010971 247 LNTVDRVLLDAPCS 260 (496)
Q Consensus 247 ~~~fD~VLlDaPCS 260 (496)
...||-||+|-=-|
T Consensus 94 i~~vDGiL~DLGVS 107 (314)
T COG0275 94 IGKVDGILLDLGVS 107 (314)
T ss_pred CCceeEEEEeccCC
Confidence 35899999985444
No 224
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.28 E-value=0.0025 Score=62.04 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=84.9
Q ss_pred EeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCCC
Q 010971 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 182 VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPCS 260 (496)
|.|+||--|-..++|.+.- ....++|+|+++.=++.+++++++.|+.+ +.+..+|+...-.. ....|.|++ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~--~e~~d~ivI----A 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP--GEDVDTIVI----A 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G--GG---EEEE----E
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC--CCCCCEEEE----e
Confidence 7899999999999888752 23479999999999999999999999876 88999998653221 133788877 4
Q ss_pred CCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 261 g~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
|+| ..+-.+||......+ +....||. .|.-+...+..+|..++|.+++-
T Consensus 74 GMG--------------------G~lI~~ILe~~~~~~----~~~~~lIL-----qP~~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 74 GMG--------------------GELIIEILEAGPEKL----SSAKRLIL-----QPNTHAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp EE---------------------HHHHHHHHHHTGGGG----TT--EEEE-----EESS-HHHHHHHHHHTTEEEEEE
T ss_pred cCC--------------------HHHHHHHHHhhHHHh----ccCCeEEE-----eCCCChHHHHHHHHHCCCEEEEe
Confidence 555 234567888877665 55556765 45568889999999999988764
No 225
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.17 E-value=0.00082 Score=67.43 Aligned_cols=88 Identities=22% Similarity=0.087 Sum_probs=69.2
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL- 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~- 245 (496)
....+..+++.++..|||+|+|+|..|..|+... ..|+++|+++..+..|++.+. ...++.++++|+..+....
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHh
Confidence 3455677788899999999999999999998875 689999999999999988776 4568999999998875321
Q ss_pred CCCCcCEEEECCCC
Q 010971 246 GLNTVDRVLLDAPC 259 (496)
Q Consensus 246 ~~~~fD~VLlDaPC 259 (496)
-......|+.+.|.
T Consensus 94 ~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 94 LKNQPLLVVGNLPY 107 (262)
T ss_dssp CSSSEEEEEEEETG
T ss_pred hcCCceEEEEEecc
Confidence 01345678887774
No 226
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.15 E-value=0.0013 Score=58.85 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=50.4
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
+|||+||+.|..+..++...+ .+.|+++|.++..+..++.|+..+++.++.+++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999988753 4699999999999999999999999888877776543
No 227
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0015 Score=68.22 Aligned_cols=119 Identities=22% Similarity=0.251 Sum_probs=87.3
Q ss_pred eCCcchhHHHhcCCCC---CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Q 010971 163 QSASSFLPVMALAPQE---KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 163 Qd~sS~l~v~~L~~~~---g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
|.-..-+.+.++..-. ..+|||.-+|+|--++-+|--.+.. .|++||+|+..++.++.|+..+...+..+++.|+.
T Consensus 34 m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN 112 (380)
T COG1867 34 MEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDAN 112 (380)
T ss_pred hhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHH
Confidence 3333334444443333 7899999999999999888877654 89999999999999999999996667777778886
Q ss_pred CCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 240 ~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+-... ...||+|=+||= |+- --.+.+|+..+ +.||+|.. |||
T Consensus 113 ~lm~~~-~~~fd~IDiDPF--GSP------------------------aPFlDaA~~s~----~~~G~l~v-TAT 155 (380)
T COG1867 113 ALLHEL-HRAFDVIDIDPF--GSP------------------------APFLDAALRSV----RRGGLLCV-TAT 155 (380)
T ss_pred HHHHhc-CCCccEEecCCC--CCC------------------------chHHHHHHHHh----hcCCEEEE-Eec
Confidence 653322 268999999973 221 12488888887 88887754 554
No 228
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.13 E-value=0.003 Score=61.26 Aligned_cols=129 Identities=20% Similarity=0.300 Sum_probs=85.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEecCCCCCcccc------CCCCc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGNELPKVL------GLNTV 250 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv-~v~~~D~~~~~~~~------~~~~f 250 (496)
.+.+||+++||+|--+.|+|+.+++ -.-.--|.+...+..+.+.+...|+.|+ ..+..|+..-+... ....|
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 3446999999999999999999975 5667889999999999999999999885 33455655432212 23589
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE-EEeCCC---CCcCCHHHHHH
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCSI---MVTENEAVIDY 326 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LV-YSTCSi---~~eENE~vV~~ 326 (496)
|.|++ ...-+|..-... ..|+..|.++| ++||.|+ |---.. +..|.-..-+.
T Consensus 104 D~i~~-------------------~N~lHI~p~~~~-~~lf~~a~~~L----~~gG~L~~YGPF~~~G~~ts~SN~~FD~ 159 (204)
T PF06080_consen 104 DAIFC-------------------INMLHISPWSAV-EGLFAGAARLL----KPGGLLFLYGPFNRDGKFTSESNAAFDA 159 (204)
T ss_pred ceeee-------------------hhHHHhcCHHHH-HHHHHHHHHhC----CCCCEEEEeCCcccCCEeCCcHHHHHHH
Confidence 99986 111222222222 44778888876 9999875 554443 22333344455
Q ss_pred HHHhC
Q 010971 327 ALKKR 331 (496)
Q Consensus 327 ~L~~~ 331 (496)
.|+.+
T Consensus 160 sLr~r 164 (204)
T PF06080_consen 160 SLRSR 164 (204)
T ss_pred HHhcC
Confidence 56554
No 229
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0049 Score=62.83 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=85.9
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEecCCCCCccccC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~~nv~v~~~D~~~~~~~~~ 246 (496)
.++..+.| .+||=+|-|.|+.+-.+..... --.++.+|+++.-++.+++-+.... -+.+.++..|+..+-....
T Consensus 70 ~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 70 PLLAHPNP-KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhhhCCCC-CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 44455666 5999999999999988877653 4689999999999999999887664 3458889999988865443
Q ss_pred CCCcCEEEECCC-CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 247 LNTVDRVLLDAP-CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 247 ~~~fD~VLlDaP-CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
..||+|++|.- +.|-| + . -...+.+..+.+.| +++|.+|.=+=|..
T Consensus 148 -~~fDvIi~D~tdp~gp~-----~-~-------------Lft~eFy~~~~~~L----~~~Gi~v~q~~~~~ 194 (282)
T COG0421 148 -EKFDVIIVDSTDPVGPA-----E-A-------------LFTEEFYEGCRRAL----KEDGIFVAQAGSPF 194 (282)
T ss_pred -CcCCEEEEcCCCCCCcc-----c-c-------------cCCHHHHHHHHHhc----CCCcEEEEecCCcc
Confidence 47999999942 11111 0 0 11234466666665 99999988755533
No 230
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.04 E-value=0.0033 Score=62.99 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=63.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
...++||+|||-|+.|..|+.+.. .|+|-|+|+.+.. ++.+-|.+ ++..| ++... ...||+|-|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~----rL~~kg~~---vl~~~--~w~~~--~~~fDvIsc-- 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRW----RLSKKGFT---VLDID--DWQQT--DFKFDVISC-- 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHH----HHHhCCCe---EEehh--hhhcc--CCceEEEee--
Confidence 357899999999999999999874 5999999987654 44555664 22222 23221 257999965
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.-++.|. ..-..||..+.+.+ +|+|+++.+
T Consensus 158 ----LNvLDRc----------------~~P~~LL~~i~~~l----~p~G~lilA 187 (265)
T PF05219_consen 158 ----LNVLDRC----------------DRPLTLLRDIRRAL----KPNGRLILA 187 (265)
T ss_pred ----hhhhhcc----------------CCHHHHHHHHHHHh----CCCCEEEEE
Confidence 3333332 11245677777776 999999865
No 231
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.03 E-value=0.0025 Score=69.86 Aligned_cols=148 Identities=17% Similarity=0.111 Sum_probs=85.9
Q ss_pred cccEEEeCCcchhHHHhcCCC--CCCeEeeccCCCchHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHcCCC--
Q 010971 157 AGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMK---NTGLIYANEMKASRLKSLTANLHRMGVT-- 229 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~--~g~~VLDmcAgpGgKT~~lA~l~~---~~g~V~A~D~s~~rl~~l~~nl~r~g~~-- 229 (496)
.|.|+.-..-+.+.+.++.+. |+..|.|+|||+|+.-......+. ....+++.+.+.........|+.-.|+.
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 343433323334445566654 678999999999998765443332 1236899999999999888887666653
Q ss_pred eEEEEecCCCCCccccCCCCcCEEEECCCCCCC---CcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 010971 230 NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT---GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 230 nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~---G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG 306 (496)
...+..+|...-+.......||.|+.+||.+.. |.........+.+....+..+.......+.+++..| ++||
T Consensus 274 t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L----~~gG 349 (501)
T TIGR00497 274 NFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVL----GQEG 349 (501)
T ss_pred ccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhc----CCCC
Confidence 233334454332222223579999999998764 111111111111111111223344566677787776 8998
Q ss_pred EE
Q 010971 307 YI 308 (496)
Q Consensus 307 ~L 308 (496)
+.
T Consensus 350 ~~ 351 (501)
T TIGR00497 350 TA 351 (501)
T ss_pred eE
Confidence 64
No 232
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.02 E-value=0.0029 Score=62.69 Aligned_cols=87 Identities=20% Similarity=0.108 Sum_probs=59.1
Q ss_pred hhHHHhcCCCCCC--eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----C-----CeEEEEec
Q 010971 168 FLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----V-----TNTIVCNY 236 (496)
Q Consensus 168 ~l~v~~L~~~~g~--~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g----~-----~nv~v~~~ 236 (496)
...+.++.+++|. +|||+.||-|.=++.+|.+ + +.|+++|.|+--...+..-++++. . ..+.+++.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4556777777765 9999999999999999875 3 689999999999888887777652 1 35899999
Q ss_pred CCCCCccccCCCCcCEEEECCC
Q 010971 237 DGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 237 D~~~~~~~~~~~~fD~VLlDaP 258 (496)
|+..+-. ....+||+|.+||=
T Consensus 140 d~~~~L~-~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 140 DALEYLR-QPDNSFDVVYFDPM 160 (234)
T ss_dssp -CCCHCC-CHSS--SEEEE--S
T ss_pred CHHHHHh-hcCCCCCEEEECCC
Confidence 9988754 33579999999983
No 233
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.00 E-value=0.0029 Score=63.64 Aligned_cols=138 Identities=16% Similarity=0.137 Sum_probs=92.2
Q ss_pred ccEEEeCCcc-hhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEe
Q 010971 158 GFYMLQSASS-FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCN 235 (496)
Q Consensus 158 G~~~iQd~sS-~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~ 235 (496)
|.+++-.+.- .-.+...+.++++.||++|-|||..|..|.+.. .+|+|+|+++..+..+..+.+-....+ ..++.
T Consensus 37 GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~ 113 (315)
T KOG0820|consen 37 GQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLH 113 (315)
T ss_pred chhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEe
Confidence 5555554321 112344567899999999999999999888763 589999999999999999987665544 78899
Q ss_pred cCCCCCccccCCCCcCEEEECCCCCCC--Cccc--CCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 236 YDGNELPKVLGLNTVDRVLLDAPCSGT--GVIS--KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VLlDaPCSg~--G~i~--r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+|....+. ..||.++.+-|+--+ +++- .++.+.|. ....+|++. |++++ -+| |...|+
T Consensus 114 gD~lK~d~----P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~-------AvlmfQ~Ef---a~RLv---a~p-gd~~Yc 175 (315)
T KOG0820|consen 114 GDFLKTDL----PRFDGCVSNLPYQISSPLVFKLLLHRPVFRC-------AVLMFQREF---ALRLV---ARP-GDSLYC 175 (315)
T ss_pred cccccCCC----cccceeeccCCccccCHHHHHhcCCCCCcce-------eeeehhhhh---hhhhc---cCC-CCchhc
Confidence 99877542 469999999887433 3221 11211111 112355543 45555 155 677787
Q ss_pred eCCCC
Q 010971 312 TCSIM 316 (496)
Q Consensus 312 TCSi~ 316 (496)
--|++
T Consensus 176 rlsin 180 (315)
T KOG0820|consen 176 RLSIN 180 (315)
T ss_pred eeehh
Confidence 77775
No 234
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.97 E-value=0.0055 Score=59.64 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=53.9
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH-------HHcCC--CeEEEEecCCCCCc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL-------HRMGV--TNTIVCNYDGNELP 242 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl-------~r~g~--~nv~v~~~D~~~~~ 242 (496)
..+++.+++..+|+|||.|.-.++.|... +-...+++|+.+.+...+..+. +.+|. ..+.+..+|+.+.+
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 45678899999999999999888777655 4457999999999887665443 33454 35778888876543
Q ss_pred ---cccCCCCcCEEEECCCCC
Q 010971 243 ---KVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 243 ---~~~~~~~fD~VLlDaPCS 260 (496)
..+ ...|+|+++.=|.
T Consensus 115 ~~~~~~--s~AdvVf~Nn~~F 133 (205)
T PF08123_consen 115 FVKDIW--SDADVVFVNNTCF 133 (205)
T ss_dssp HHHHHG--HC-SEEEE--TTT
T ss_pred hHhhhh--cCCCEEEEecccc
Confidence 112 4689999987664
No 235
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.91 E-value=0.03 Score=52.69 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=91.5
Q ss_pred cCCCchHHHHHHHHcCCCcEEEEE--eCCHHHHHH---HHHHHHHcCCCe-EEEEecCCCCCcccc--CCCCcCEEEECC
Q 010971 186 AAAPGGKTTYIAALMKNTGLIYAN--EMKASRLKS---LTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVLLDA 257 (496)
Q Consensus 186 cAgpGgKT~~lA~l~~~~g~V~A~--D~s~~rl~~---l~~nl~r~g~~n-v~v~~~D~~~~~~~~--~~~~fD~VLlDa 257 (496)
|=|--++|..|+...+....|+|- |....-++. +..|+..+.-.+ .++...|++.+.... ....||+|+-+=
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNF 83 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNF 83 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeC
Confidence 344456667777776633455554 544433332 335666553333 344567998887665 567899999999
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEee
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~ 337 (496)
|+.|.|.- .....+.....+-...+.+|..++ +++|.|..+-|.-.|- +...|..+.++.++.++.
T Consensus 84 PH~G~~~~---------~~~~~i~~nr~Ll~~Ff~Sa~~~L----~~~G~IhVTl~~~~py-~~W~i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 84 PHVGGGSE---------DGKRNIRLNRELLRGFFKSASQLL----KPDGEIHVTLKDGQPY-DSWNIEELAAEAGLVLVR 149 (166)
T ss_pred CCCCCCcc---------chhHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCCCC-ccccHHHHHHhcCCEEEE
Confidence 99985432 223444445555566777777776 9999999999998775 777777777777877766
Q ss_pred c
Q 010971 338 C 338 (496)
Q Consensus 338 ~ 338 (496)
.
T Consensus 150 ~ 150 (166)
T PF10354_consen 150 K 150 (166)
T ss_pred E
Confidence 4
No 236
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.88 E-value=0.0029 Score=58.70 Aligned_cols=81 Identities=11% Similarity=0.092 Sum_probs=56.5
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---CCeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHH
Q 010971 207 YANEMKASRLKSLTANLHRMG---VTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283 (496)
Q Consensus 207 ~A~D~s~~rl~~l~~nl~r~g---~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l 283 (496)
+|+|+|+.+++.++++....+ ..++.++.+|+..+| +..+.||.|++. .++ +. +
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~v~~~-----~~l-~~---------------~ 57 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP--FDDCEFDAVTMG-----YGL-RN---------------V 57 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC--CCCCCeeEEEec-----chh-hc---------------C
Confidence 479999999999987765322 356899999999887 344789999861 221 00 0
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 284 ~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
. -..+.|.++.+.| ||||+|+....+.
T Consensus 58 ~-d~~~~l~ei~rvL----kpGG~l~i~d~~~ 84 (160)
T PLN02232 58 V-DRLRAMKEMYRVL----KPGSRVSILDFNK 84 (160)
T ss_pred C-CHHHHHHHHHHHc----CcCeEEEEEECCC
Confidence 0 1234577777765 9999999877663
No 237
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.82 E-value=0.0046 Score=62.55 Aligned_cols=77 Identities=25% Similarity=0.335 Sum_probs=56.3
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcCEEEECCCC
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDAPC 259 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD~VLlDaPC 259 (496)
+|+|+|||.||.++-+.+. +--.|+|+|+++..++..+.|.. .+...|...+.. .++. .+|+++.=|||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~-~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK-DVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc-cceEEEeccCC
Confidence 7999999999999877664 22378999999999999999986 566778777632 2322 59999999999
Q ss_pred CCCCcccC
Q 010971 260 SGTGVISK 267 (496)
Q Consensus 260 Sg~G~i~r 267 (496)
.+..+..+
T Consensus 72 Q~fS~ag~ 79 (335)
T PF00145_consen 72 QGFSIAGK 79 (335)
T ss_dssp TTTSTTST
T ss_pred ceEecccc
Confidence 99877764
No 238
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.80 E-value=0.0015 Score=62.77 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=57.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.|.+|||+|||+|--++..+. .+...|++.|+++.....+.-|++.+|+ ++.++..|... . +..||+||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~----~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S----PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C----CcceeEEEe
Confidence 589999999999987764333 3556899999999999999999999996 57777777654 2 267999997
No 239
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.78 E-value=0.0052 Score=59.82 Aligned_cols=110 Identities=24% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.++-.|-|||||-+..+ +..++.-.|...|+-.. |-.|+..|...+| +.++.+|++++
T Consensus 71 ~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vP--L~~~svDv~Vf- 128 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP---------------NPRVTACDIANVP--LEDESVDVAVF- 128 (219)
T ss_dssp -TTS-EEEES-TT-HHH----HH--S---EEEEESS-S---------------STTEEES-TTS-S----TT-EEEEEE-
T ss_pred CCCEEEEECCCchHHHH----HhcccCceEEEeeccCC---------------CCCEEEecCccCc--CCCCceeEEEE-
Confidence 34679999999998654 55555457999998752 2235667888888 45689999987
Q ss_pred CCC-CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEE
Q 010971 257 APC-SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (496)
Q Consensus 257 aPC-Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~l 335 (496)
| |-+|+ --...|.+|.+.| ||||.|....-.-- -+|-..-...+...||++
T Consensus 129 --cLSLMGT---------------------n~~~fi~EA~RvL----K~~G~L~IAEV~SR-f~~~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 129 --CLSLMGT---------------------NWPDFIREANRVL----KPGGILKIAEVKSR-FENVKQFIKALKKLGFKL 180 (219)
T ss_dssp --ES---SS----------------------HHHHHHHHHHHE----EEEEEEEEEEEGGG--S-HHHHHHHHHCTTEEE
T ss_pred --EhhhhCC---------------------CcHHHHHHHHhee----ccCcEEEEEEeccc-CcCHHHHHHHHHHCCCeE
Confidence 5 33342 1234689999987 99999977653321 234433334455556655
Q ss_pred e
Q 010971 336 V 336 (496)
Q Consensus 336 v 336 (496)
.
T Consensus 181 ~ 181 (219)
T PF05148_consen 181 K 181 (219)
T ss_dssp E
T ss_pred E
Confidence 4
No 240
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.71 E-value=0.019 Score=59.63 Aligned_cols=128 Identities=10% Similarity=0.020 Sum_probs=80.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEE--EecCCCCCccccC----
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVTNTIV--CNYDGNELPKVLG---- 246 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~---~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v--~~~D~~~~~~~~~---- 246 (496)
+.++..|+|+|||.|.||..|.+.+.. ...-+++|+|...|..+..++..-.+..+.+ +++|......+++
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 356789999999999999988877643 2468999999999999999998444555444 6676644322111
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHH-hhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID-MVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~-~l~~~lkpGG~LVYSTCSi~~eENE~vV~ 325 (496)
......|+. |=|..|- .++.+. ..+|....+ .+ .|||.|+... --..+.++|.
T Consensus 154 ~~~~r~~~f--lGSsiGN----------f~~~ea-------~~fL~~~~~~~l----~~~d~lLiG~---D~~k~~~~l~ 207 (319)
T TIGR03439 154 RSRPTTILW--LGSSIGN----------FSRPEA-------AAFLAGFLATAL----SPSDSFLIGL---DGCKDPDKVL 207 (319)
T ss_pred cCCccEEEE--eCccccC----------CCHHHH-------HHHHHHHHHhhC----CCCCEEEEec---CCCCCHHHHH
Confidence 133555554 3333332 222222 234555545 44 9999998853 3335566665
Q ss_pred HHHH
Q 010971 326 YALK 329 (496)
Q Consensus 326 ~~L~ 329 (496)
.+-.
T Consensus 208 ~AY~ 211 (319)
T TIGR03439 208 RAYN 211 (319)
T ss_pred HHhc
Confidence 5543
No 241
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.51 E-value=0.01 Score=58.19 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=73.1
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEecCCCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR------------MGVTNTIVCNYDGNEL 241 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r------------~g~~nv~v~~~D~~~~ 241 (496)
+...++.+||+-+||.|--...||+. .-.|+|+|+|+..++.+.+.... ....+|.+.++|...+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 44678899999999999999999885 24899999999999887432211 1123578899999887
Q ss_pred ccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 242 ~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+... .+.||.|.= |+..-.+ +|+.+ .+...+...+| +|||.+++.|-.
T Consensus 110 ~~~~-~g~fD~iyD---r~~l~Al--pp~~R---------------~~Ya~~l~~ll----~p~g~~lLi~l~ 157 (218)
T PF05724_consen 110 PPED-VGKFDLIYD---RTFLCAL--PPEMR---------------ERYAQQLASLL----KPGGRGLLITLE 157 (218)
T ss_dssp GGSC-HHSEEEEEE---CSSTTTS---GGGH---------------HHHHHHHHHCE----EEEEEEEEEEEE
T ss_pred Chhh-cCCceEEEE---ecccccC--CHHHH---------------HHHHHHHHHHh----CCCCcEEEEEEE
Confidence 5432 257999963 3322222 23322 12344445555 999996665544
No 242
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.50 E-value=0.0099 Score=54.46 Aligned_cols=107 Identities=20% Similarity=0.315 Sum_probs=67.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccC-CchhhccCCHHHHHH
Q 010971 205 LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK-DESVKTSKSLEDIQK 282 (496)
Q Consensus 205 ~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r-~p~~k~~~s~~~i~~ 282 (496)
+|+|+|+-+..++..+++++..|+.+ +.+++..-..+....+.+.+|.|+. .+|.+.. |..+- .
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iF-----NLGYLPggDk~i~---------T 66 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIF-----NLGYLPGGDKSIT---------T 66 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEE-----EESB-CTS-TTSB----------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEE-----ECCcCCCCCCCCC---------c
Confidence 58999999999999999999999865 8888877677766554347888865 5676654 22221 1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC---cCCHHHHHHHHHh
Q 010971 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV---TENEAVIDYALKK 330 (496)
Q Consensus 283 l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~---eENE~vV~~~L~~ 330 (496)
.+..=..-|..|+.+| +|||.|+...-.=++ +|-+.|.+| ++.
T Consensus 67 ~~~TTl~Al~~al~lL----~~gG~i~iv~Y~GH~gG~eE~~av~~~-~~~ 112 (140)
T PF06962_consen 67 KPETTLKALEAALELL----KPGGIITIVVYPGHPGGKEESEAVEEF-LAS 112 (140)
T ss_dssp -HHHHHHHHHHHHHHE----EEEEEEEEEE--STCHHHHHHHHHHHH-HHT
T ss_pred CcHHHHHHHHHHHHhh----ccCCEEEEEEeCCCCCCHHHHHHHHHH-HHh
Confidence 1222234578888887 999999887666676 355555554 444
No 243
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.47 E-value=0.011 Score=58.59 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=48.0
Q ss_pred hcCCCCCC-eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccccCCCCc
Q 010971 173 ALAPQEKE-RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 173 ~L~~~~g~-~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~~~~~f 250 (496)
.....++. .++|+|||+|-.+..+|.... .|+|.|+|..+|+.+...-.-.-+ ....+...++..+.. ..+++
T Consensus 27 ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--~e~SV 101 (261)
T KOG3010|consen 27 IASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--GEESV 101 (261)
T ss_pred HHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC--CCcce
Confidence 33444555 899999999955556666653 699999999999966543211111 112333333333321 24789
Q ss_pred CEEEE
Q 010971 251 DRVLL 255 (496)
Q Consensus 251 D~VLl 255 (496)
|.|++
T Consensus 102 DlI~~ 106 (261)
T KOG3010|consen 102 DLITA 106 (261)
T ss_pred eeehh
Confidence 99976
No 244
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.45 E-value=0.0075 Score=58.38 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=79.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-------CCeEEEEecCCCCC-ccccCCCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-------VTNTIVCNYDGNEL-PKVLGLNT 249 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g-------~~nv~v~~~D~~~~-~~~~~~~~ 249 (496)
..-.+.|+|||-||..+.|+-+.+. ..|++.++.-.-.+-.++++..++ ..|+.+...++..+ |..+..+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 4567999999999999999999865 689999998887777777777766 67888887777654 54443333
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+.++. +-++|..+-.+....+. +..++..-.-+| ++||.|+++|-.
T Consensus 139 Lskmff---------~fpdpHfk~~khk~rii-----~~~l~~eyay~l----~~gg~~ytitDv 185 (249)
T KOG3115|consen 139 LSKMFF---------LFPDPHFKARKHKWRII-----TSTLLSEYAYVL----REGGILYTITDV 185 (249)
T ss_pred ccccee---------ecCChhHhhhhccceee-----chhHHHHHHhhh----hcCceEEEEeeH
Confidence 344333 22456655444433332 233454444444 999999887643
No 245
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.42 E-value=0.017 Score=59.62 Aligned_cols=104 Identities=29% Similarity=0.373 Sum_probs=72.0
Q ss_pred cCCCCCCeEeeccCCCchHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC--CC----CccccC
Q 010971 174 LAPQEKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NE----LPKVLG 246 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~-~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~--~~----~~~~~~ 246 (496)
-.++.|.+||=+||||=|..+ ..|+.| +...|+..|+++.|++.+++ +|.+.+....... .. ....+.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcc
Confidence 357899999999999965555 455555 46799999999999998766 7887654443322 11 111122
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
...||.++- |||..+ -++.|+..+ ++||.+|..-|-
T Consensus 240 ~~~~d~~~d---CsG~~~-------------------------~~~aai~a~----r~gGt~vlvg~g 275 (354)
T KOG0024|consen 240 KKQPDVTFD---CSGAEV-------------------------TIRAAIKAT----RSGGTVVLVGMG 275 (354)
T ss_pred ccCCCeEEE---ccCchH-------------------------HHHHHHHHh----ccCCEEEEeccC
Confidence 245999885 888753 256667776 999998877654
No 246
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.14 E-value=0.02 Score=58.13 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=62.1
Q ss_pred CeEeeccCCCchHHHH-HHHHcCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCe-EEEEecCCCCCccccCCCCcCEEEEC
Q 010971 180 ERVIDMAAAPGGKTTY-IAALMKNTGLIYANEMKASRLKSLTANLH-RMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~-lA~l~~~~g~V~A~D~s~~rl~~l~~nl~-r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.+|+=+|+||=-.|+. |++.......|+++|+++.+....++-+. .+|+.. +.+..+|+......+ ..||+|++-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--KEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------SEEEE-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc--ccCCEEEEh
Confidence 4999999999777764 55444444679999999999999998888 667654 889999987765444 689999984
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+- .|+ +.+ --.++|.+..+.+ +||..|+|=
T Consensus 200 al---Vg~-----------~~e-------~K~~Il~~l~~~m----~~ga~l~~R 229 (276)
T PF03059_consen 200 AL---VGM-----------DAE-------PKEEILEHLAKHM----APGARLVVR 229 (276)
T ss_dssp TT----S----------------------SHHHHHHHHHHHS-----TTSEEEEE
T ss_pred hh---ccc-----------ccc-------hHHHHHHHHHhhC----CCCcEEEEe
Confidence 42 110 000 1134788888876 999999874
No 247
>PRK04148 hypothetical protein; Provisional
Probab=96.11 E-value=0.024 Score=51.65 Aligned_cols=68 Identities=3% Similarity=-0.067 Sum_probs=48.0
Q ss_pred CCCCeEeeccCCCch-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGg-KT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..+.+|||+|+|.|. .+..|+++ ...|+|+|+++.+++.++.+ + +.++..|.......+ ...+|.|..
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~-y~~a~liys 83 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEI-YKNAKLIYS 83 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHH-HhcCCEEEE
Confidence 356899999999996 66566643 25899999999987766554 3 356677776543221 378999975
No 248
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.11 E-value=0.015 Score=59.82 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=80.3
Q ss_pred chhHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--C----eEEEEecCCCC
Q 010971 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--T----NTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~--~----nv~v~~~D~~~ 240 (496)
|+|.-..+ ++++.||||+||-||-.+-.-.. +-+.++++|+..--+..++.+...|.- . .+.++.+|...
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 44544443 57999999999999976643322 346899999998888888877665421 1 24666777543
Q ss_pred C--cccc--CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 241 L--PKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 241 ~--~~~~--~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
- ...+ .+.+||+|=|-=- ..+.+.-..- -+.+|.++..+| +|||+++=+
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~------------~HYaFetee~------ar~~l~Nva~~L----kpGG~FIgT----- 236 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFA------------FHYAFETEES------ARIALRNVAKCL----KPGGVFIGT----- 236 (389)
T ss_pred hHHHHhccCCCCCcceeeeeee------------EeeeeccHHH------HHHHHHHHHhhc----CCCcEEEEe-----
Confidence 1 1111 2234888754111 1222322221 244688888886 999999653
Q ss_pred CcCCHHHHHHHHHhC
Q 010971 317 VTENEAVIDYALKKR 331 (496)
Q Consensus 317 ~eENE~vV~~~L~~~ 331 (496)
--|-.||-+=|+..
T Consensus 237 -iPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 237 -IPDSDVIIKRLRAG 250 (389)
T ss_pred -cCcHHHHHHHHHhc
Confidence 34566666666543
No 249
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.02 E-value=0.02 Score=55.32 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=64.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHc----CC----CcEEEEEeCCHHHHHHHHHH--------------HHHc-----C---
Q 010971 178 EKERVIDMAAAPGGKTTYIAALM----KN----TGLIYANEMKASRLKSLTAN--------------LHRM-----G--- 227 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~----~~----~g~V~A~D~s~~rl~~l~~n--------------l~r~-----g--- 227 (496)
..-+||.+||++|-=.-.||-++ .. .-.|+|.|+|+..++.+++- ++++ |
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45689999999996443333322 21 23899999999999887652 2222 1
Q ss_pred -C-----CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010971 228 -V-----TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 228 -~-----~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~ 301 (496)
+ ..|.+...|....+. ..+.||+|+| ||--+ .--...|.+++....+.|
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~--~~~~fD~I~C-----------RNVlI---------YF~~~~~~~vl~~l~~~L--- 165 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP--PFGRFDLIFC-----------RNVLI---------YFDPETQQRVLRRLHRSL--- 165 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE------------SSGG---------GS-HHHHHHHHHHHGGGE---
T ss_pred eEChHHcCceEEEecccCCCCc--ccCCccEEEe-----------cCEEE---------EeCHHHHHHHHHHHHHHc---
Confidence 1 247888888877222 2378999998 22111 122356777888888876
Q ss_pred CCCCcEEEEEeCCCC
Q 010971 302 SKSGGYIVYSTCSIM 316 (496)
Q Consensus 302 lkpGG~LVYSTCSi~ 316 (496)
+|||+|+....-..
T Consensus 166 -~pgG~L~lG~sE~l 179 (196)
T PF01739_consen 166 -KPGGYLFLGHSESL 179 (196)
T ss_dssp -EEEEEEEE-TT--S
T ss_pred -CCCCEEEEecCccC
Confidence 99999998655443
No 250
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.99 E-value=0.19 Score=41.81 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=67.1
Q ss_pred EeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC--CccccCC-CCcCEEEECCC
Q 010971 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE--LPKVLGL-NTVDRVLLDAP 258 (496)
Q Consensus 182 VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~--~~~~~~~-~~fD~VLlDaP 258 (496)
|||++||+|..+ +++........++++|++...+..........+...+.+...|... ++ +.. ..||.+.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP--FEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC--CCCCCceeEEeeeee
Confidence 999999999987 5555543323788899999999885555443222215666666554 33 222 36888833222
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC
Q 010971 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (496)
Q Consensus 259 CSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eE 319 (496)
+... . ...++..+.+.+ +|+|.+++++.......
T Consensus 129 ~~~~-------------~----------~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~ 162 (257)
T COG0500 129 LHLL-------------P----------PAKALRELLRVL----KPGGRLVLSDLLRDGLL 162 (257)
T ss_pred hhcC-------------C----------HHHHHHHHHHhc----CCCcEEEEEeccCCCCc
Confidence 1000 0 234566666665 99999999888866544
No 251
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.015 Score=57.54 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=50.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~~~fD~VLl 255 (496)
-+|..|||+||.+||+|-.+.+. +...|+|+|+....+..--++ ...-+.+-..|++.+ +..+ .+..|.|++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~ 150 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLTPEDF-TEKPDLIVI 150 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc----CCcEEEEecCChhhCCHHHc-ccCCCeEEE
Confidence 36899999999999999988875 456999999987555432111 111233445566655 2223 247899999
Q ss_pred CCC
Q 010971 256 DAP 258 (496)
Q Consensus 256 DaP 258 (496)
|..
T Consensus 151 DvS 153 (245)
T COG1189 151 DVS 153 (245)
T ss_pred Eee
Confidence 976
No 252
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.93 E-value=0.033 Score=57.01 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=68.7
Q ss_pred CeEeeccCCCchHHHHHH----HHcCC---CcEEEEEeCCHHHHHHHHHHH--------------HHc---------C--
Q 010971 180 ERVIDMAAAPGGKTTYIA----ALMKN---TGLIYANEMKASRLKSLTANL--------------HRM---------G-- 227 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA----~l~~~---~g~V~A~D~s~~rl~~l~~nl--------------~r~---------g-- 227 (496)
-+||.++|++|-=.-.|| +.++. .-.|+|.|+|...++.+++.. .++ |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 699999999996443333 33222 247999999999999888652 110 1
Q ss_pred -----C-CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010971 228 -----V-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 228 -----~-~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~ 301 (496)
+ ..|.+...|....+.. ..+.||+|+|- + + -+.--...|.+++....+.|
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cR-----------N--v-------liyF~~~~~~~vl~~l~~~L--- 252 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCR-----------N--V-------MIYFDKTTQERILRRFVPLL--- 252 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCc-cCCCcceeeHh-----------h--H-------HhcCCHHHHHHHHHHHHHHh---
Confidence 1 1356666676553211 13689999871 0 0 01112245778888888887
Q ss_pred CCCCcEEEEEe
Q 010971 302 SKSGGYIVYST 312 (496)
Q Consensus 302 lkpGG~LVYST 312 (496)
+|||+|+...
T Consensus 253 -~pgG~L~lG~ 262 (287)
T PRK10611 253 -KPDGLLFAGH 262 (287)
T ss_pred -CCCcEEEEeC
Confidence 9999998754
No 253
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.78 E-value=0.22 Score=48.99 Aligned_cols=125 Identities=14% Similarity=0.169 Sum_probs=95.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
..+.+|.|+||--|-..+++..--. ...++|.|+++.-++.+..|+.+.+... +.+..+|+.. .......+|.|.+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~--~l~~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA--VLELEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc--ccCccCCcCEEEE
Confidence 4577799999999999988876543 3589999999999999999999999865 7888889843 2223357999887
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEE
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~l 335 (496)
.|+| ..+-.+||....+.+ +.--++| +.|.-++.-+..+|..+++.+
T Consensus 92 ----AGMG--------------------G~lI~~ILee~~~~l----~~~~rlI-----LQPn~~~~~LR~~L~~~~~~I 138 (226)
T COG2384 92 ----AGMG--------------------GTLIREILEEGKEKL----KGVERLI-----LQPNIHTYELREWLSANSYEI 138 (226)
T ss_pred ----eCCc--------------------HHHHHHHHHHhhhhh----cCcceEE-----ECCCCCHHHHHHHHHhCCcee
Confidence 3555 234467888888876 3223555 578889999999999988887
Q ss_pred ee
Q 010971 336 VP 337 (496)
Q Consensus 336 v~ 337 (496)
+.
T Consensus 139 ~~ 140 (226)
T COG2384 139 KA 140 (226)
T ss_pred ee
Confidence 65
No 254
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.73 E-value=0.032 Score=50.68 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHcC--C-CeEEEEecC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMK---NTGLIYANEMKASRLKSLTANLHRMG--V-TNTIVCNYD 237 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~---~~g~V~A~D~s~~rl~~l~~nl~r~g--~-~nv~v~~~D 237 (496)
.+..+|+|+|||-|..+..++.++. ..-.|+++|.++..+..+....++++ . .+..+...+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGD 90 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccc
Confidence 6788999999999999999999553 34689999999999999999999988 4 334444443
No 255
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.71 E-value=0.014 Score=60.35 Aligned_cols=78 Identities=22% Similarity=0.235 Sum_probs=57.8
Q ss_pred EeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcCEEEECCCCC
Q 010971 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 182 VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD~VLlDaPCS 260 (496)
|||++||.||.+.-+-+. +--.+.|+|+++..++..+.|... .+...|...+.. .+ ..+|+++.-+||.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~~--~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSDI--PDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhhC--CCcCEEEecCCCc
Confidence 699999999999877654 233678999999999999988632 234466665532 12 4689999999999
Q ss_pred CCCcccCCc
Q 010971 261 GTGVISKDE 269 (496)
Q Consensus 261 g~G~i~r~p 269 (496)
+.-+..+..
T Consensus 71 ~fS~ag~~~ 79 (315)
T TIGR00675 71 PFSIAGKRK 79 (315)
T ss_pred ccchhcccC
Confidence 887665543
No 256
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.71 E-value=0.015 Score=56.54 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=54.8
Q ss_pred cccEEEeCCcchhHHHhc--CCCCCCeEeeccCCCchHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 157 AGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L--~~~~g~~VLDmcAgpGgKT~~lA~l~---~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
.|.-++|.+.-+++...| ..+ -+.|+.+|.+-||.+...|.++ ++.|.|+++|++-.......-..+-+ ...|
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI 87 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRI 87 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTE
T ss_pred CCeehhcCHHHHHHHHHHHHHhC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCce
Confidence 366777877666554333 233 3699999999999999887655 46689999999654443332222333 2568
Q ss_pred EEEecCCCCCcccc------CCCCcCEEEECCC
Q 010971 232 IVCNYDGNELPKVL------GLNTVDRVLLDAP 258 (496)
Q Consensus 232 ~v~~~D~~~~~~~~------~~~~fD~VLlDaP 258 (496)
.++.+|........ .......|++|+-
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~ 120 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSS 120 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS-
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCC
Confidence 99999987653221 1234568888874
No 257
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.56 E-value=0.045 Score=56.20 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=80.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCe-EEEEec-CCCC-Ccccc-CCCCcCEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVCNY-DGNE-LPKVL-GLNTVDRV 253 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-g~~n-v~v~~~-D~~~-~~~~~-~~~~fD~V 253 (496)
.-++||+|+|....=-.|+..+. .=.++|.|+++.-++.+++|++++ ++.+ |.+... +... +.... ....||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999999887666666554 358999999999999999999999 8865 666543 2222 22111 23589999
Q ss_pred EECCCCCCCC------cccCC------------chhhccCC-HHHHHHH--HHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 254 LLDAPCSGTG------VISKD------------ESVKTSKS-LEDIQKC--SYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 254 LlDaPCSg~G------~i~r~------------p~~k~~~s-~~~i~~l--~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+|+||-..+. .-++. |..-..-+ .+-+..- ...-.+++.....+ + ..+..-|
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~-----~--~~v~WfT 254 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQL-----K--DQVRWFT 254 (299)
T ss_dssp EE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHH-----G--GGEEEEE
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHh-----C--CCcEEEe
Confidence 9999986553 11111 11111101 1111111 12335677777765 2 3455557
Q ss_pred CCCCCcCCHHHHHHHHHhCCc
Q 010971 313 CSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 313 CSi~~eENE~vV~~~L~~~~~ 333 (496)
|=+...+|-.-+...|++.++
T Consensus 255 smvgKkssL~~l~~~L~~~~~ 275 (299)
T PF05971_consen 255 SMVGKKSSLKPLKKELKKLGA 275 (299)
T ss_dssp EEESSGGGHHHHHHHHHHTT-
T ss_pred ecccCcccHHHHHHHHHhcCC
Confidence 778889999999999988653
No 258
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.53 E-value=0.089 Score=52.97 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=78.1
Q ss_pred CCCCeEeeccCCCchHHHH-HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC---------------------------
Q 010971 177 QEKERVIDMAAAPGGKTTY-IAALMKNTGLIYANEMKASRLKSLTANLHRMGV--------------------------- 228 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~-lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~--------------------------- 228 (496)
..|.++||+|||| |++ +..+...--.|+..|..+.-.+.++.-++.-|.
T Consensus 55 ~~g~~llDiGsGP---tiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGP---TIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT-----GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCc---HHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 3588999999999 333 122222234799999999888777665543221
Q ss_pred C-eE-EEEecCCCCCccccC----CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010971 229 T-NT-IVCNYDGNELPKVLG----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302 (496)
Q Consensus 229 ~-nv-~v~~~D~~~~~~~~~----~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~l 302 (496)
. .| .|+..|....+...+ +..||.|+. ..-.+.+..-....+..|.+...+|
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s------------------~fcLE~a~~d~~~y~~al~ni~~lL---- 189 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVIS------------------SFCLESACKDLDEYRRALRNISSLL---- 189 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEE------------------ESSHHHH-SSHHHHHHHHHHHHTTE----
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhh------------------hHHHHHHcCCHHHHHHHHHHHHHHc----
Confidence 0 12 355667665433221 134888865 1222333323334556677777776
Q ss_pred CCCcEEEEEeCC------C------CCcCCHHHHHHHHHhCCcEEeec
Q 010971 303 KSGGYIVYSTCS------I------MVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 303 kpGG~LVYSTCS------i------~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
||||+|+....- + ..-=|++.|..+|++.++.++..
T Consensus 190 kpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 190 KPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp EEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred CCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 999999976321 0 01237899999999988877765
No 259
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.44 E-value=0.11 Score=53.89 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=55.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.|..|||+|||+|-.+...|+. +...|+|++.|. +.+.++..++.+.+. .|.++.+...++. + ++..|+|+..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdie--L-PEk~DviISE 250 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIE--L-PEKVDVIISE 250 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccccc--C-chhccEEEec
Confidence 4778999999999999877775 457999999875 556666667666664 4777777665543 2 2689999987
Q ss_pred C
Q 010971 257 A 257 (496)
Q Consensus 257 a 257 (496)
|
T Consensus 251 P 251 (517)
T KOG1500|consen 251 P 251 (517)
T ss_pred c
Confidence 6
No 260
>PRK00536 speE spermidine synthase; Provisional
Probab=95.40 E-value=0.22 Score=50.33 Aligned_cols=118 Identities=12% Similarity=0.045 Sum_probs=73.7
Q ss_pred HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CCC--eEEEEecCCCCCccccC
Q 010971 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GVT--NTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~~--nv~v~~~D~~~~~~~~~ 246 (496)
+++..+. -.+||=+|.|-||..-.+... ...|+.+|+|+.-++.+++-+-.+ +++ ++.++.. +.. ..
T Consensus 66 pl~~h~~-pk~VLIiGGGDGg~~REvLkh---~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~-~~ 136 (262)
T PRK00536 66 GGCTKKE-LKEVLIVDGFDLELAHQLFKY---DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLD-LD 136 (262)
T ss_pred HHhhCCC-CCeEEEEcCCchHHHHHHHCc---CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhh-cc
Confidence 3344444 379999999999988776655 249999999999999999855443 233 3555541 211 11
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~ 326 (496)
.+.||+|++|.. .++ .....+.+. |+|||.+|.=+-|... ...++..
T Consensus 137 ~~~fDVIIvDs~----------------~~~-----------~fy~~~~~~----L~~~Gi~v~Qs~sp~~--~~~~~~~ 183 (262)
T PRK00536 137 IKKYDLIICLQE----------------PDI-----------HKIDGLKRM----LKEDGVFISVAKHPLL--EHVSMQN 183 (262)
T ss_pred CCcCCEEEEcCC----------------CCh-----------HHHHHHHHh----cCCCcEEEECCCCccc--CHHHHHH
Confidence 267999999942 111 112333344 4999999885555543 2444454
Q ss_pred HHHh
Q 010971 327 ALKK 330 (496)
Q Consensus 327 ~L~~ 330 (496)
+.+.
T Consensus 184 i~~~ 187 (262)
T PRK00536 184 ALKN 187 (262)
T ss_pred HHHH
Confidence 4443
No 261
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.34 E-value=0.072 Score=53.99 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCeEeeccCCCch----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHH------H---------HHc------C--
Q 010971 179 KERVIDMAAAPGG----KTTYIAALMKN----TGLIYANEMKASRLKSLTAN------L---------HRM------G-- 227 (496)
Q Consensus 179 g~~VLDmcAgpGg----KT~~lA~l~~~----~g~V~A~D~s~~rl~~l~~n------l---------~r~------g-- 227 (496)
--+||-++|++|- .++.|.+.++. .-.|+|.|+|...|+.++.- + .++ |
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 3578888898884 44445555542 45899999999999887642 1 111 1
Q ss_pred -----C-CeEEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010971 228 -----V-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 228 -----~-~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~ 301 (496)
+ ..|.+...|...-+. ..+.||+|+| ||--+ .--...|.+|+..-...|
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfC-----------RNVLI---------YFd~~~q~~il~~f~~~L--- 231 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFC-----------RNVLI---------YFDEETQERILRRFADSL--- 231 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc--ccCCCCEEEE-----------cceEE---------eeCHHHHHHHHHHHHHHh---
Confidence 0 124455555443221 2367999998 22222 223467899999988887
Q ss_pred CCCCcEEEEE
Q 010971 302 SKSGGYIVYS 311 (496)
Q Consensus 302 lkpGG~LVYS 311 (496)
+|||+|+.-
T Consensus 232 -~~gG~LflG 240 (268)
T COG1352 232 -KPGGLLFLG 240 (268)
T ss_pred -CCCCEEEEc
Confidence 999999864
No 262
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.031 Score=58.01 Aligned_cols=83 Identities=25% Similarity=0.341 Sum_probs=60.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcCEEEECC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD~VLlDa 257 (496)
..+|+|+|||.||..+-+.+. +--.+.|+|+++..++....|... ..+...|...+.. .+....+|+|+--+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCC
Confidence 357999999999999766654 234789999999999999988864 2344455544321 11111799999999
Q ss_pred CCCCCCcccCC
Q 010971 258 PCSGTGVISKD 268 (496)
Q Consensus 258 PCSg~G~i~r~ 268 (496)
||-+.-+..+.
T Consensus 76 PCQ~FS~aG~r 86 (328)
T COG0270 76 PCQDFSIAGKR 86 (328)
T ss_pred CCcchhhcCcc
Confidence 99988777665
No 263
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.23 E-value=0.072 Score=52.24 Aligned_cols=133 Identities=15% Similarity=0.069 Sum_probs=75.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
...+.||+|||-|-.|-++.. +---.|-.+|..+.-+..+++.+...+..-..+.+.-..++... ..+||+|-+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl--~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~--~~~YDlIW~-- 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLL--PVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE--EGKYDLIWI-- 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCC--CC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEEE--
T ss_pred CcceEEecccccchhHHHHHH--HhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC--CCcEeEEEe--
Confidence 467999999999999976532 22358999999999999998766552222344555555554221 268999976
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe-CCCCC-----cC------CHHHHH
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST-CSIMV-----TE------NEAVID 325 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST-CSi~~-----eE------NE~vV~ 325 (496)
..+....|.+++ ...|.++...| +|||.||.=. ||-.. +| ......
T Consensus 129 -----------QW~lghLTD~dl-------v~fL~RCk~~L----~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~ 186 (218)
T PF05891_consen 129 -----------QWCLGHLTDEDL-------VAFLKRCKQAL----KPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFR 186 (218)
T ss_dssp -----------ES-GGGS-HHHH-------HHHHHHHHHHE----EEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHH
T ss_pred -----------hHhhccCCHHHH-------HHHHHHHHHhC----cCCcEEEEEecCCCCCCcccCCccCeeecCHHHHH
Confidence 111123344554 34577787776 9999998531 11111 11 234555
Q ss_pred HHHHhCCcEEeec
Q 010971 326 YALKKRDVKLVPC 338 (496)
Q Consensus 326 ~~L~~~~~~lv~~ 338 (496)
.+.++.+++++..
T Consensus 187 ~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 187 ELFKQAGLRLVKE 199 (218)
T ss_dssp HHHHHCT-EEEEE
T ss_pred HHHHHcCCEEEEe
Confidence 5666667777654
No 264
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.98 E-value=0.021 Score=58.30 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=58.6
Q ss_pred CCCeEeeccCCCchHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~-~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
.|+.|+||.||-|.+|+ .+-.. +...|+|+|.++..++.|+.+++.+++.. ..++.+|-+..- . ....|+|.+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-~--~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-P--RLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-c--cccchheee
Confidence 47999999999999998 44433 45699999999999999999999998754 456677776542 2 368999977
Q ss_pred C
Q 010971 256 D 256 (496)
Q Consensus 256 D 256 (496)
-
T Consensus 269 G 269 (351)
T KOG1227|consen 269 G 269 (351)
T ss_pred c
Confidence 3
No 265
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.94 E-value=0.08 Score=57.71 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=57.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc--------------
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------------- 244 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-------------- 244 (496)
.-+++|+|||.||.++-+-+. +--.|.|+|+++...+....|... ..+..+.+.|.+.+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 569999999999999877543 223789999999999999988521 11223334455444210
Q ss_pred -cCCCCcCEEEECCCCCCCCccc
Q 010971 245 -LGLNTVDRVLLDAPCSGTGVIS 266 (496)
Q Consensus 245 -~~~~~fD~VLlDaPCSg~G~i~ 266 (496)
.....+|+++.-+||-+.-+..
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hccCCCCCEEEEcCCCCccchhc
Confidence 0013689999999998876554
No 266
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.92 E-value=0.012 Score=62.54 Aligned_cols=64 Identities=25% Similarity=0.239 Sum_probs=55.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecCCCCCc
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELP 242 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~--nv~v~~~D~~~~~ 242 (496)
.++|+.|-|+|||-|-.++-++.. .+.|+|||.++..++.|..|+..+-+. +|.+.+.||..|-
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 468999999999999998876654 389999999999999999999988774 4899999998764
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.84 E-value=0.16 Score=53.15 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=65.5
Q ss_pred CCCCCCeEeeccCC-CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 175 APQEKERVIDMAAA-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDmcAg-pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+.||++|+=.|+| -|..++++|..|. ..|+|+|.+++.++.+ +++|.+.+.... |........ +.||.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a----~~lGAd~~i~~~-~~~~~~~~~--~~~d~i 233 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELA----KKLGADHVINSS-DSDALEAVK--EIADAI 233 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHH----HHhCCcEEEEcC-CchhhHHhH--hhCcEE
Confidence 46899999988887 3345566666664 7999999999988655 567776654433 444443332 349999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|.=+| . ..+..++++| ++||++|..
T Consensus 234 i~tv~-~----------------------------~~~~~~l~~l----~~~G~~v~v 258 (339)
T COG1064 234 IDTVG-P----------------------------ATLEPSLKAL----RRGGTLVLV 258 (339)
T ss_pred EECCC-h----------------------------hhHHHHHHHH----hcCCEEEEE
Confidence 98544 1 1267777876 999999864
No 268
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.71 E-value=0.13 Score=52.14 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=39.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~ 226 (496)
..+|||+|||||.-+..+.+.++....++++|.|+..++..+.-++..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 358999999999877777777775568999999999998877766544
No 269
>PHA01634 hypothetical protein
Probab=94.61 E-value=0.14 Score=46.40 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.|.+|+|+||+-|..+++.+- .+...|+|++.++...+.+++|++-+.+-+-.+... .++..+ +.||+..+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l--~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~---eW~~~Y--~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLL--RGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG---EWNGEY--EDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhh--cCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc---cccccC--CCcceEEEE
Confidence 488999999999999988764 356799999999999999999998875422111111 344334 789999998
No 270
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.40 E-value=0.22 Score=48.19 Aligned_cols=143 Identities=17% Similarity=0.085 Sum_probs=77.9
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHH-----H-HHHHHHHHHcCCCeEEEEecCCCCCccccCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASR-----L-KSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~r-----l-~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~ 247 (496)
..+++|.+|+|+--|.|.+|-.++-.++.+|.|+++=..... - ..+..-...-+..|+.++..+...++ ..
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~---~p 120 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG---AP 120 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---CC
Confidence 357899999999999999999999999999999987443321 1 22222222233344444333322221 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC----------
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV---------- 317 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~---------- 317 (496)
+..|.+.. ..-.+- .+...+. ...--+......+.| ||||.++.-.-...+
T Consensus 121 q~~d~~~~-----------~~~yhd--mh~k~i~--~~~A~~vna~vf~~L----KPGGv~~V~dH~a~pG~~~~dt~~~ 181 (238)
T COG4798 121 QKLDLVPT-----------AQNYHD--MHNKNIH--PATAAKVNAAVFKAL----KPGGVYLVEDHRADPGSGLSDTITL 181 (238)
T ss_pred Cccccccc-----------chhhhh--hhccccC--cchHHHHHHHHHHhc----CCCcEEEEEeccccCCCChhhhhhh
Confidence 22333321 000000 0000000 111123345555665 999998876544333
Q ss_pred -cCCHHHHHHHHHhCCcEEeec
Q 010971 318 -TENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 318 -eENE~vV~~~L~~~~~~lv~~ 338 (496)
--++++|.......+|+|.--
T Consensus 182 ~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 182 HRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred cccChHHHHHHHHhhcceeeee
Confidence 236677777777778887643
No 271
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=94.31 E-value=0.34 Score=47.67 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=73.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..|.+||.+|=|-|-..+.+.+.-+ ..-+-++.++.-++.++.+.=+- -.||+++.+-=.+....+.++.||-|+-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccccccCcceeEee
Confidence 5799999999999999988876532 46677899999888776654221 24677665422222222345789999998
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE 321 (496)
+= .-.-+++ +.+-.++.++| ||+|.+-| |-.+..-|.
T Consensus 177 Ty---------------~e~yEdl-------~~~hqh~~rLL----kP~gv~Sy--fNg~~~~~~ 213 (271)
T KOG1709|consen 177 TY---------------SELYEDL-------RHFHQHVVRLL----KPEGVFSY--FNGLGADNL 213 (271)
T ss_pred ch---------------hhHHHHH-------HHHHHHHhhhc----CCCceEEE--ecCcccchh
Confidence 52 1112333 33344777776 99998777 555544443
No 272
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=94.23 E-value=0.022 Score=55.75 Aligned_cols=93 Identities=19% Similarity=0.135 Sum_probs=63.7
Q ss_pred HHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-----
Q 010971 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----- 244 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~----- 244 (496)
++..|.|.+|...+||.-|.||.|..|.+.-. ..+++|.|.+|-.-+.+......+=-..+..+-+.+..++..
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g 113 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG 113 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHHhC
Confidence 35678899999999999999999999998764 468999999998776665555322111111111222222221
Q ss_pred cCCCCcCEEEECCCCCCCC
Q 010971 245 LGLNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G 263 (496)
+.+.+||-||.|--||..-
T Consensus 114 l~~~~vDGiLmDlGcSSMQ 132 (303)
T KOG2782|consen 114 LLDVGVDGILMDLGCSSMQ 132 (303)
T ss_pred CCcCCcceEEeecCccccc
Confidence 1247899999999999764
No 273
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.17 E-value=0.34 Score=49.20 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=61.8
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-ccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-~~~~~~~~fD~VLl 255 (496)
..|..|+=|| ---.|...+++.+-.-.|..+|++..-+.-...-++.+|+.|+..+.+|.+.. |..+ ...||+.+.
T Consensus 151 L~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~-~~kFDvfiT 227 (354)
T COG1568 151 LEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL-KRKFDVFIT 227 (354)
T ss_pred cCCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH-HhhCCeeec
Confidence 3577788777 33333333344443458999999999999999999999999999999999864 5544 378999999
Q ss_pred CCCCC
Q 010971 256 DAPCS 260 (496)
Q Consensus 256 DaPCS 260 (496)
|||-+
T Consensus 228 DPpeT 232 (354)
T COG1568 228 DPPET 232 (354)
T ss_pred Cchhh
Confidence 99944
No 274
>PRK11524 putative methyltransferase; Provisional
Probab=93.95 E-value=0.11 Score=52.88 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=45.2
Q ss_pred CeEEEEecCCCCCccccCCCCcCEEEECCCCCC-CCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 010971 229 TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG-TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 229 ~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg-~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~ 307 (496)
.+..++++|+..+...++.++||+|++|||+-. .+.....+ .+... ........+|..+.++| +|||.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~----~~~~~---~~~~~l~~~l~~~~rvL----K~~G~ 75 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIE----AWKED---LFIDWLYEWIDECHRVL----KKQGT 75 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccc----cccHH---HHHHHHHHHHHHHHHHh----CCCcE
Confidence 345678899887655555689999999999843 11111111 12211 22222355677777765 99999
Q ss_pred EEEEeCCC
Q 010971 308 IVYSTCSI 315 (496)
Q Consensus 308 LVYSTCSi 315 (496)
|+.. |+.
T Consensus 76 i~i~-~~~ 82 (284)
T PRK11524 76 MYIM-NST 82 (284)
T ss_pred EEEE-cCc
Confidence 9764 543
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.88 E-value=0.15 Score=53.31 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=64.4
Q ss_pred CCCCeEeeccCCCchHH-HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC-CCC-CccccCCCCcCEE
Q 010971 177 QEKERVIDMAAAPGGKT-TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD-GNE-LPKVLGLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT-~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D-~~~-~~~~~~~~~fD~V 253 (496)
.++.+|+=+||||=|.. ..++.++ +...|+++|.++.|++.+++.. |...+.....+ ... .........||.|
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 45559999999995554 5555555 4579999999999999876532 33222111111 100 0111112379999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
+- |||+. ..+..|++++ +|||.+++..-.
T Consensus 243 ie---~~G~~-------------------------~~~~~ai~~~----r~gG~v~~vGv~ 271 (350)
T COG1063 243 IE---AVGSP-------------------------PALDQALEAL----RPGGTVVVVGVY 271 (350)
T ss_pred EE---CCCCH-------------------------HHHHHHHHHh----cCCCEEEEEecc
Confidence 87 87732 1477888887 999999986444
No 276
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.62 E-value=0.41 Score=54.34 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=84.2
Q ss_pred hhHHHhcC-CCCCCeEeeccCCCchHHHHHHHHcC-------C----CcEEEEEeCCH---HHHHHHH----------HH
Q 010971 168 FLPVMALA-PQEKERVIDMAAAPGGKTTYIAALMK-------N----TGLIYANEMKA---SRLKSLT----------AN 222 (496)
Q Consensus 168 ~l~v~~L~-~~~g~~VLDmcAgpGgKT~~lA~l~~-------~----~g~V~A~D~s~---~rl~~l~----------~n 222 (496)
.|+..... ....-+|||+|=|+|.-.+...+... + .-.++++|..+ ..+..+- +.
T Consensus 46 ~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~ 125 (662)
T PRK01747 46 GLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQ 125 (662)
T ss_pred CHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHH
Confidence 34444432 23346899999999998887776651 1 23789999755 3332221 11
Q ss_pred HH-H-----cCCC---------eEEEEecCCCCCccccCCCCcCEEEECC--CCCCCCcccCCchhhccCCHHHHHHHHH
Q 010971 223 LH-R-----MGVT---------NTIVCNYDGNELPKVLGLNTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSY 285 (496)
Q Consensus 223 l~-r-----~g~~---------nv~v~~~D~~~~~~~~~~~~fD~VLlDa--PCSg~G~i~r~p~~k~~~s~~~i~~l~~ 285 (496)
+. . .|+. +..+..+|++..-..+. ..||.|++|+ | .++|++ |+.
T Consensus 126 l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~-~~~d~~~lD~FsP-------~~np~~---W~~-------- 186 (662)
T PRK01747 126 LQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANELLPQLD-ARADAWFLDGFAP-------AKNPDM---WSP-------- 186 (662)
T ss_pred HHHhCCccCCCceEEEecCCcEEEEEEecCHHHHHHhcc-ccccEEEeCCCCC-------ccChhh---ccH--------
Confidence 11 1 1331 23456678765432221 4699999995 6 577887 343
Q ss_pred HHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 286 lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
+++....+++ +|||+++-.||+ ..|...|...+|++...
T Consensus 187 ---~~~~~l~~~~----~~~~~~~t~t~a-------~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 187 ---NLFNALARLA----RPGATLATFTSA-------GFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ---HHHHHHHHHh----CCCCEEEEeehH-------HHHHHHHHHcCCeeeec
Confidence 3455555554 999999865554 46788888888877643
No 277
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.56 E-value=0.6 Score=48.08 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=59.3
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-CCCCcC
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~--g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-~~~~fD 251 (496)
...+|++||=.+| |+.++.+.++.... ..|++.|.++.|++.+ +.+|.+.+. ..+-..+.... ..+.||
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a----~~lGa~~vi--~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA----REMGADKLV--NPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH----HHcCCcEEe--cCCcccHHHHhccCCCCC
Confidence 3557999998765 55555444433322 3699999999998765 457876432 21111111111 113599
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.||- |+|.. ..+..+++++ ++||++|....+
T Consensus 238 ~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G~~ 268 (343)
T PRK09880 238 VSFE---VSGHP-------------------------SSINTCLEVT----RAKGVMVQVGMG 268 (343)
T ss_pred EEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEEccC
Confidence 8874 55531 1356677776 999999876543
No 278
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.83 E-value=1.1 Score=42.24 Aligned_cols=126 Identities=24% Similarity=0.277 Sum_probs=73.0
Q ss_pred EEEeCCcchhHHHhcC-CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC
Q 010971 160 YMLQSASSFLPVMALA-PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~-~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~ 238 (496)
|+-.+-+..++-.++. ..++.+|+=+||=+--..+ .........++-.|.|.. .+.+|-+ .++.+|.
T Consensus 6 wYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l--~~~~~~~~~~~Lle~D~R--------F~~~~~~--~F~fyD~ 73 (162)
T PF10237_consen 6 WYSDETAEFLARELLDGALDDTRIACLSTPSLYEAL--KKESKPRIQSFLLEYDRR--------FEQFGGD--EFVFYDY 73 (162)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHH--HhhcCCCccEEEEeecch--------HHhcCCc--ceEECCC
Confidence 3333333344444444 3456789888765443332 222234457888898863 3334433 4567776
Q ss_pred CC---CccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 239 NE---LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 239 ~~---~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.. ++..+ .+.||+|++|||- .+.+-... ...+++.| +++++.|+.+
T Consensus 74 ~~p~~~~~~l-~~~~d~vv~DPPF---------------l~~ec~~k--------~a~ti~~L---~k~~~kii~~---- 122 (162)
T PF10237_consen 74 NEPEELPEEL-KGKFDVVVIDPPF---------------LSEECLTK--------TAETIRLL---LKPGGKIILC---- 122 (162)
T ss_pred CChhhhhhhc-CCCceEEEECCCC---------------CCHHHHHH--------HHHHHHHH---hCccceEEEe----
Confidence 54 34334 3789999999993 12222111 23344444 4889999884
Q ss_pred CCcCCHHHHHHHH
Q 010971 316 MVTENEAVIDYAL 328 (496)
Q Consensus 316 ~~eENE~vV~~~L 328 (496)
++++++..+...|
T Consensus 123 Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 123 TGEEMEELIKKLL 135 (162)
T ss_pred cHHHHHHHHHHHh
Confidence 4578888888877
No 279
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.78 E-value=1 Score=46.35 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=56.9
Q ss_pred cCCCCCCeEeeccCCCch-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGg-KT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
..+++|++||=.++|+-| .+.++|..++ ..|++.+.++.+++. ++.+|.+.+... .+ .. ...+|.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~----a~~~Ga~~vi~~-~~---~~----~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRL----ALALGAASAGGA-YD---TP----PEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHH----HHHhCCceeccc-cc---cC----cccceE
Confidence 457889999988864332 2234444442 368999999988654 456888654211 11 11 145887
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
++. |++.| ..+..+++++ ++||++|..-
T Consensus 227 ~i~---~~~~~-------------------------~~~~~~~~~l----~~~G~~v~~G 254 (329)
T TIGR02822 227 AIL---FAPAG-------------------------GLVPPALEAL----DRGGVLAVAG 254 (329)
T ss_pred EEE---CCCcH-------------------------HHHHHHHHhh----CCCcEEEEEe
Confidence 765 22222 1366777876 9999987643
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.73 E-value=0.73 Score=50.87 Aligned_cols=178 Identities=13% Similarity=0.141 Sum_probs=97.3
Q ss_pred HcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc---CCCCcCCcccEEEecCCCCCCCCcccccccEEEeCCcchhHH--
Q 010971 97 SFEKPRPICLRTNTLKTRRRDLADVLINRGVNL---DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPV-- 171 (496)
Q Consensus 97 a~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~---~p~~~~~~~gl~v~~~~~~i~~~~~~~~G~~~iQd~sS~l~v-- 171 (496)
.+....-+.-.+++.. -.++.+.|.++|+.+ +.+..|+.. ...++-.+-.-..||--++.++..+..
T Consensus 82 ~l~~g~~li~~l~p~~--~~~l~~~l~~~~it~ia~e~vpr~sra------q~~d~lssma~IAGy~Av~~aa~~~~~~~ 153 (509)
T PRK09424 82 LLREGATLVSFIWPAQ--NPELLEKLAARGVTVLAMDAVPRISRA------QSLDALSSMANIAGYRAVIEAAHEFGRFF 153 (509)
T ss_pred hcCCCCEEEEEeCccc--CHHHHHHHHHcCCEEEEeecccccccC------CCcccccchhhhhHHHHHHHHHHHhcccC
Confidence 3333333444455532 367999999998864 333222221 111222222334555444444332221
Q ss_pred ----HhcCCCCCCeEeeccCCCchHH-HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC--------
Q 010971 172 ----MALAPQEKERVIDMAAAPGGKT-TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-------- 238 (496)
Q Consensus 172 ----~~L~~~~g~~VLDmcAgpGgKT-~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~-------- 238 (496)
-++...++.+||=+|||+=|.. +..|..++ ..|+++|.++.|++.++ .+|.+.+.+-..+.
T Consensus 154 ~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~ae----slGA~~v~i~~~e~~~~~~gya 227 (509)
T PRK09424 154 TGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVE----SMGAEFLELDFEEEGGSGDGYA 227 (509)
T ss_pred CCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HcCCeEEEeccccccccccchh
Confidence 1233568999999999986654 45566654 37999999999988654 47876443311110
Q ss_pred CCCccc--------cC--CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 010971 239 NELPKV--------LG--LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 239 ~~~~~~--------~~--~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~L 308 (496)
..+... +. ...+|+|+. |+|.- -++.|. -++..+++.+ +|||.|
T Consensus 228 ~~~s~~~~~~~~~~~~~~~~gaDVVIe---tag~p-g~~aP~------------------lit~~~v~~m----kpGgvI 281 (509)
T PRK09424 228 KVMSEEFIKAEMALFAEQAKEVDIIIT---TALIP-GKPAPK------------------LITAEMVASM----KPGSVI 281 (509)
T ss_pred hhcchhHHHHHHHHHHhccCCCCEEEE---CCCCC-cccCcc------------------hHHHHHHHhc----CCCCEE
Confidence 011000 00 146999986 44320 001111 1247778876 999999
Q ss_pred EEEeCC
Q 010971 309 VYSTCS 314 (496)
Q Consensus 309 VYSTCS 314 (496)
|...|.
T Consensus 282 Vdvg~~ 287 (509)
T PRK09424 282 VDLAAE 287 (509)
T ss_pred EEEccC
Confidence 998885
No 281
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=92.66 E-value=1.1 Score=46.92 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=74.0
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECCCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDaPC 259 (496)
...+|+|+|.|..+-++....+ .|-+++.+..-+-....++. -|+. .+-+|+.. . . ..-|+|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~gV~---~v~gdmfq--~-~--P~~daI~m---- 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PGVE---HVAGDMFQ--D-T--PKGDAIWM---- 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CCcc---eecccccc--c-C--CCcCeEEE----
Confidence 7899999999999999888664 38888888888877777776 6644 34455532 1 1 24568876
Q ss_pred CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 260 Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
..+...|+.++. .++|.++++.| +|||.|+...|-+.
T Consensus 243 ---------kWiLhdwtDedc-------vkiLknC~~sL----~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 243 ---------KWILHDWTDEDC-------VKILKNCKKSL----PPGGKIIVVENVTP 279 (342)
T ss_pred ---------EeecccCChHHH-------HHHHHHHHHhC----CCCCEEEEEeccCC
Confidence 122235777776 56899999997 99999999888554
No 282
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.42 E-value=0.5 Score=41.20 Aligned_cols=87 Identities=23% Similarity=0.389 Sum_probs=59.6
Q ss_pred CchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCCCCcCEEEECCCCCCCCc
Q 010971 189 PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLNTVDRVLLDAPCSGTGV 264 (496)
Q Consensus 189 pGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~~~fD~VLlDaPCSg~G~ 264 (496)
-|..++++|..++ ..|++.|.++.|++.+ +++|...+ +..+..++. .......+|.||- |+|.+
T Consensus 2 vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~----~~~Ga~~~--~~~~~~~~~~~i~~~~~~~~~d~vid---~~g~~- 69 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--AKVIATDRSEEKLELA----KELGADHV--IDYSDDDFVEQIRELTGGRGVDVVID---CVGSG- 69 (130)
T ss_dssp HHHHHHHHHHHTT--SEEEEEESSHHHHHHH----HHTTESEE--EETTTSSHHHHHHHHTTTSSEEEEEE---SSSSH-
T ss_pred hHHHHHHHHHHcC--CEEEEEECCHHHHHHH----Hhhccccc--ccccccccccccccccccccceEEEE---ecCcH-
Confidence 4778888998876 8999999999998765 56775443 344333221 1122247999986 66643
Q ss_pred ccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 265 i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
..+..++.++ ++||++|.....-
T Consensus 70 ------------------------~~~~~~~~~l----~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 ------------------------DTLQEAIKLL----RPGGRIVVVGVYG 92 (130)
T ss_dssp ------------------------HHHHHHHHHE----EEEEEEEEESSTS
T ss_pred ------------------------HHHHHHHHHh----ccCCEEEEEEccC
Confidence 2477888887 9999998755443
No 283
>PRK13699 putative methylase; Provisional
Probab=92.31 E-value=0.47 Score=46.81 Aligned_cols=92 Identities=15% Similarity=0.051 Sum_probs=51.3
Q ss_pred EEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 232 ~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+.++|+.++-..++++++|.|+.|||+- .|.-..... ..... .........+.++.+.| ||||.++ +
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~-i~~~~~~~~---~~~~~---~~~ew~~~~l~E~~RVL----Kpgg~l~-i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYL-VGFRDRQGR---TIAGD---KTDEWLQPACNEMYRVL----KKDALMV-S 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcc-cccccCCCc---ccccc---cHHHHHHHHHHHHHHHc----CCCCEEE-E
Confidence 46678887765556678999999999994 221111100 00001 11122345566666665 9988765 4
Q ss_pred eCCCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 312 TCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 312 TCSi~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
-|+... -..+..++.+.++.+...
T Consensus 71 f~~~~~---~~~~~~al~~~GF~l~~~ 94 (227)
T PRK13699 71 FYGWNR---VDRFMAAWKNAGFSVVGH 94 (227)
T ss_pred Eecccc---HHHHHHHHHHCCCEEeeE
Confidence 566532 223334456667776553
No 284
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.29 E-value=1.9 Score=41.42 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=72.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+.+|| +..|.|+.+.+++..+... ..|++++.++..+..+...++..+. ++.++..|..+.... + ..+
T Consensus 6 ~~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG-RAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 466777 5556788999988766433 4788889998888877777765553 577777888764211 1 014
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHH----HHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLED----IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~----i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+|.|+..+ |....... ...+.++ +.....-...++..++..+.. ..+|.+|+.+.+
T Consensus 84 ~id~vi~~a---g~~~~~~~----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~g~iv~isS~ 144 (250)
T PRK12939 84 GLDGLVNNA---GITNSKSA----TELDIDTWDAVMNVNVRGTFLMLRAALPHLRD--SGRGRIVNLASD 144 (250)
T ss_pred CCCEEEECC---CCCCCCCh----hhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH--cCCeEEEEECch
Confidence 689998844 32211111 1112222 222222333455555554311 347899987664
No 285
>PRK11524 putative methyltransferase; Provisional
Probab=92.11 E-value=0.31 Score=49.55 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=37.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r 225 (496)
.+|+.|||-++|+|..+. .|..++ ...+++|+++.-++.+..++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~-AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGA-VAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHH-HHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 589999999999997554 344443 4789999999999999999854
No 286
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.10 E-value=1.2 Score=43.65 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=55.4
Q ss_pred CCeEeeccCCCc--hHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCC-CCccccCCCCcCEE
Q 010971 179 KERVIDMAAAPG--GKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGN-ELPKVLGLNTVDRV 253 (496)
Q Consensus 179 g~~VLDmcAgpG--gKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~-~~~~~~~~~~fD~V 253 (496)
-..|++.||+-| ..|+.||..... .|.++++-.+...+....+.+..+|+.+ +.++.+|.. .+...+ ..+|.+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~--~~iDF~ 119 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL--KGIDFV 119 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc--cCCCEE
Confidence 356788866533 346665554443 4699999999999999999999999876 577777753 333233 689999
Q ss_pred EECC
Q 010971 254 LLDA 257 (496)
Q Consensus 254 LlDa 257 (496)
|+|.
T Consensus 120 vVDc 123 (218)
T PF07279_consen 120 VVDC 123 (218)
T ss_pred EEeC
Confidence 9985
No 287
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.09 E-value=0.21 Score=54.46 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=57.1
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEE---EeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYA---NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A---~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
..+||+|||.|+++.+|... + -.++. +|..+.-++.+ -+-|+..+.-+-+ ...+| ++.+.||.|=
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~-V~t~s~a~~d~~~~qvqfa----leRGvpa~~~~~~-s~rLP--fp~~~fDmvH-- 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--N-VTTMSFAPNDEHEAQVQFA----LERGVPAMIGVLG-SQRLP--FPSNAFDMVH-- 186 (506)
T ss_pred EEEEeccceeehhHHHHhhC--C-ceEEEcccccCCchhhhhh----hhcCcchhhhhhc-ccccc--CCccchhhhh--
Confidence 36899999999999888765 2 22222 24444333322 2235544321111 23455 3458899985
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
||.-.+ .|...+- -+|...-+ .|+|||++|+|.--++
T Consensus 187 --csrc~i---------~W~~~~g--------~~l~evdR----vLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 187 --CSRCLI---------PWHPNDG--------FLLFEVDR----VLRPGGYFVLSGPPVY 223 (506)
T ss_pred --cccccc---------cchhccc--------ceeehhhh----hhccCceEEecCCccc
Confidence 554432 2333321 13333333 3699999999988777
No 288
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.83 E-value=1.1 Score=46.11 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=57.1
Q ss_pred CCCCCCeEeeccCCCchHHHH---HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 175 APQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~---lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
.+++|++||=.||| +.++. ++..+.+...|+++|.++.|++.++. ++.. ... + .+.. ...||
T Consensus 160 ~~~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~--~~~--~--~~~~---~~g~d 224 (341)
T cd08237 160 AHKDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET--YLI--D--DIPE---DLAVD 224 (341)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce--eeh--h--hhhh---ccCCc
Confidence 35789999988864 44443 34432233579999999999988753 3432 111 1 1111 12589
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+|| | |+|... + -..+..+++++ ++||++|+..+
T Consensus 225 ~vi-D--~~G~~~-----------~-----------~~~~~~~~~~l----~~~G~iv~~G~ 257 (341)
T cd08237 225 HAF-E--CVGGRG-----------S-----------QSAINQIIDYI----RPQGTIGLMGV 257 (341)
T ss_pred EEE-E--CCCCCc-----------c-----------HHHHHHHHHhC----cCCcEEEEEee
Confidence 886 4 555210 0 12366777876 99999987554
No 289
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.53 E-value=0.37 Score=51.75 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=49.7
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL 241 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~ 241 (496)
-.|||+++|+|-.+++.+..+ ...|+|+++-+.+.+.++.-++++|.+ +|.+++.-.+++
T Consensus 68 v~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 469999999999988766665 357999999999999999999999986 487777655443
No 290
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=91.15 E-value=2.7 Score=44.55 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=58.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH--HHcC---C--CeEEEEecCCCCCccccCCCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL--HRMG---V--TNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl--~r~g---~--~nv~v~~~D~~~~~~~~~~~~ 249 (496)
..-++||-+|.|-|--.-.|.. .+.-+.|+-+|++|.+++....+. ...+ + +.+.+++.|+..+-+.- ...
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~ 365 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADM 365 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-ccc
Confidence 4567899999888865554443 244679999999999999988543 3322 2 35889999998775433 368
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
||.|++|-|
T Consensus 366 fD~vIVDl~ 374 (508)
T COG4262 366 FDVVIVDLP 374 (508)
T ss_pred ccEEEEeCC
Confidence 999999987
No 291
>PRK06181 short chain dehydrogenase; Provisional
Probab=91.00 E-value=3 Score=40.73 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=49.8
Q ss_pred eEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCcC
Q 010971 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVD 251 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~fD 251 (496)
+|| +.-|+|+.+.+++..+. ....|++.+.+...++.+.+.+...+. ++.+...|..+..... ..+..|
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 455 44567888888876543 335899999998888777777766553 5667778876643211 114689
Q ss_pred EEEECC
Q 010971 252 RVLLDA 257 (496)
Q Consensus 252 ~VLlDa 257 (496)
.|+..+
T Consensus 81 ~vi~~a 86 (263)
T PRK06181 81 ILVNNA 86 (263)
T ss_pred EEEECC
Confidence 998743
No 292
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.86 E-value=3.7 Score=46.06 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=55.0
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC--------CeEEEEecCCCCCcccc
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV--------TNTIVCNYDGNELPKVL 245 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~--------~nv~v~~~D~~~~~~~~ 245 (496)
+.+.|..||-.| |+|+.+.+++..+- ....|++++.+..++..+...+..+++ .++.++.+|..+.....
T Consensus 76 ~~~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 76 DTKDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred ccCCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 345677777555 56889998887653 334899999999998887776655322 24778888887653221
Q ss_pred -CCCCcCEEEEC
Q 010971 246 -GLNTVDRVLLD 256 (496)
Q Consensus 246 -~~~~fD~VLlD 256 (496)
..+.+|.|++.
T Consensus 155 ~aLggiDiVVn~ 166 (576)
T PLN03209 155 PALGNASVVICC 166 (576)
T ss_pred HHhcCCCEEEEc
Confidence 12578999874
No 293
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=90.83 E-value=0.53 Score=46.28 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=36.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHH
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~ 224 (496)
..-+++|-|||.|...+.+.-+.++. ..|+|-|++...++.++.|+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 34589999999999999888775542 379999999999988888875
No 294
>PRK07326 short chain dehydrogenase; Provisional
Probab=90.70 E-value=2.9 Score=40.03 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=50.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+..||-.| |+|+.+.+++..+... ..|++++.++.++..+...+... ..+.++..|..+.... + ..+
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777666 5788888888765433 48999999998887776666543 3466677776653211 1 014
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.|+.-+
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 689988754
No 295
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.66 E-value=1.1 Score=47.05 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=37.3
Q ss_pred hcCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 010971 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~n 222 (496)
.+.+++|++||..++|+ |..+.++|..++ .+.|+++|.++.+++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 44567899999998776 666677777764 24699999999988877654
No 296
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.58 E-value=0.51 Score=44.80 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=29.8
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLT 220 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~ 220 (496)
-.+|+.|||-+||+|+.+. .|..++ ..-+++|+++.-++.++
T Consensus 189 t~~gdiVlDpF~GSGTT~~-aa~~l~--R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAV-AAEELG--RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp S-TT-EEEETT-TTTHHHH-HHHHTT---EEEEEESSHHHHHHHH
T ss_pred hccceeeehhhhccChHHH-HHHHcC--CeEEEEeCCHHHHHHhc
Confidence 3579999999999997554 444443 47899999999888765
No 297
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.50 E-value=1.7 Score=43.47 Aligned_cols=101 Identities=20% Similarity=0.152 Sum_probs=57.8
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
+.+.+|++||=+++ |+.++.++++.+..| .|+++|.++.|++.+ +.+|.+.+.-.......+........+|
T Consensus 116 ~~~~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a----~~~Ga~~~i~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 116 AGDLKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRELA----LSFGATALAEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred ccCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHcCCcEecCchhhHHHHHHHhCCCCCC
Confidence 34568999998865 555555444433223 488999999988655 4477754321110000111111224699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+|+- |+|.. ..+..+++++ ++||+++...
T Consensus 190 ~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 218 (280)
T TIGR03366 190 VALE---FSGAT-------------------------AAVRACLESL----DVGGTAVLAG 218 (280)
T ss_pred EEEE---CCCCh-------------------------HHHHHHHHHh----cCCCEEEEec
Confidence 8864 55432 1356677776 9999987543
No 298
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=90.49 E-value=0.95 Score=45.77 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=59.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
....|-|+|||-+-.+. .. .-.|+++|+.+ .|-.|+..|++.+| +.++++|++++
T Consensus 180 ~~~vIaD~GCGEakiA~----~~--~~kV~SfDL~a---------------~~~~V~~cDm~~vP--l~d~svDvaV~-- 234 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SE--RHKVHSFDLVA---------------VNERVIACDMRNVP--LEDESVDVAVF-- 234 (325)
T ss_pred CceEEEecccchhhhhh----cc--ccceeeeeeec---------------CCCceeeccccCCc--CccCcccEEEe--
Confidence 35678999999876443 22 24689999764 24456667888887 45689999987
Q ss_pred CC-CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 258 PC-SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 258 PC-Sg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
| |-+|+ .-...+..|.++| ++||.+.....+
T Consensus 235 -CLSLMgt---------------------n~~df~kEa~RiL----k~gG~l~IAEv~ 266 (325)
T KOG3045|consen 235 -CLSLMGT---------------------NLADFIKEANRIL----KPGGLLYIAEVK 266 (325)
T ss_pred -eHhhhcc---------------------cHHHHHHHHHHHh----ccCceEEEEehh
Confidence 5 33332 1234578888876 999998776544
No 299
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.23 E-value=2.2 Score=44.18 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=59.2
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~ 247 (496)
..+++|++||=.++ |+.+..++++.+..| .|+++|.++.|++.+ +++|.+.+ ++.....+. .....
T Consensus 172 ~~~~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~----~~~Ga~~~--i~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 172 GGVKRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKLEWA----REFGATHT--VNSSGTDPVEAIRALTGG 243 (358)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCceE--EcCCCcCHHHHHHHHhCC
Confidence 35678999998864 555554444433333 599999999998877 35777432 222211111 11122
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..+|+|+ | |+|.. ..+..++.++ ++||++|+..
T Consensus 244 ~g~d~vi-d--~~g~~-------------------------~~~~~~~~~~----~~~G~iv~~G 276 (358)
T TIGR03451 244 FGADVVI-D--AVGRP-------------------------ETYKQAFYAR----DLAGTVVLVG 276 (358)
T ss_pred CCCCEEE-E--CCCCH-------------------------HHHHHHHHHh----ccCCEEEEEC
Confidence 4689886 3 66531 1255566776 9999998654
No 300
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.19 E-value=1.8 Score=44.46 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=59.1
Q ss_pred cCCCCCCeEeeccCCCchHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCC---CccccCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE---LPKVLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~---~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~---~~~~~~~ 247 (496)
...++|++||=.++ |+.+. ++|..++ ...|++++.++.+++.+ +.+|...+ ++.+... +......
T Consensus 156 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~----~~~Ga~~~--i~~~~~~~~~~~~~~~~ 226 (347)
T PRK10309 156 AQGCEGKNVIIIGA--GTIGLLAIQCAVALG-AKSVTAIDINSEKLALA----KSLGAMQT--FNSREMSAPQIQSVLRE 226 (347)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHH----HHcCCceE--ecCcccCHHHHHHHhcC
Confidence 34568999998865 44544 4444443 23578999999988765 45676433 2222111 1111222
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
..+|.+++| |+|.. ..+..+++++ ++||+++..-
T Consensus 227 ~~~d~~v~d--~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 260 (347)
T PRK10309 227 LRFDQLILE--TAGVP-------------------------QTVELAIEIA----GPRAQLALVG 260 (347)
T ss_pred CCCCeEEEE--CCCCH-------------------------HHHHHHHHHh----hcCCEEEEEc
Confidence 468866677 66542 1366777877 9999988653
No 301
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.06 E-value=5.8 Score=38.99 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=48.7
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|..||-.|+++ +|.+..++..+-. ...|+.++.+....+.+.+....++ .+.++..|..+..... ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 477899999988 4888888876543 3478778887654444444333333 2345667876542110 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+..|+++.+|
T Consensus 87 g~ld~lv~nA 96 (258)
T PRK07533 87 GRLDFLLHSI 96 (258)
T ss_pred CCCCEEEEcC
Confidence 5789999876
No 302
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.00 E-value=4.5 Score=39.08 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+|| +..|+|+.+.+++..+...| .|++++.++..+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG-KAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 45567899999888664444 899999999988888777776554 466677787653211 1 1146
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
+|.|+..+.
T Consensus 82 ~d~vi~~a~ 90 (258)
T PRK12429 82 VDILVNNAG 90 (258)
T ss_pred CCEEEECCC
Confidence 899998553
No 303
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.00 E-value=6.2 Score=37.85 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=53.3
Q ss_pred CCeEeeccCCCchHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+||-.| |+|+.+.+++..+ .....|++++.+...+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV-KVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56677666 5788888887754 3334899999998888777766665543 577778887654221 1 1146
Q ss_pred cCEEEECCCC
Q 010971 250 VDRVLLDAPC 259 (496)
Q Consensus 250 fD~VLlDaPC 259 (496)
.|.|+..+..
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 8999986643
No 304
>PRK07576 short chain dehydrogenase; Provisional
Probab=89.93 E-value=5.1 Score=39.47 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=71.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+.+||-.| |.|+.+.+++..+...| .|++++.++..+..+...+...+. .+.++..|..+.... + ..+
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888776 57788888776554334 899999999888777766766553 356677787653211 0 124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHH----HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~----l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
.+|.|+..+.. ....+- ...+.+++.. ...-...++..++..+ .+++|.||+.+.
T Consensus 86 ~iD~vi~~ag~-----~~~~~~--~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l---~~~~g~iv~iss 144 (264)
T PRK07576 86 PIDVLVSGAAG-----NFPAPA--AGMSANGFKTVVDIDLLGTFNVLKAAYPLL---RRPGASIIQISA 144 (264)
T ss_pred CCCEEEECCCC-----CCCCcc--ccCCHHHHHHHHHHHhHHHHHHHHHHHHHH---HhCCCEEEEECC
Confidence 68999986521 111111 1223333222 2222344566666554 146788887544
No 305
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.91 E-value=2.4 Score=43.76 Aligned_cols=96 Identities=16% Similarity=0.235 Sum_probs=55.3
Q ss_pred CCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeC---CHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcC
Q 010971 176 PQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEM---KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 176 ~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~---s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD 251 (496)
+++|++||=.++|+ |..+.++|..++ ..|++++. ++.|++.+ +++|...+ ......+........||
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~~v---~~~~~~~~~~~~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGATYV---NSSKTPVAEVKLVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCEEe---cCCccchhhhhhcCCCC
Confidence 46899999887643 223344555543 37888886 67777654 56787532 11111110001124699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+|+- |+|.. ..+..+++++ ++||+++...
T Consensus 241 ~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~G 269 (355)
T cd08230 241 LIIE---ATGVP-------------------------PLAFEALPAL----APNGVVILFG 269 (355)
T ss_pred EEEE---CcCCH-------------------------HHHHHHHHHc----cCCcEEEEEe
Confidence 8875 55532 1366677776 9999987543
No 306
>PRK06949 short chain dehydrogenase; Provisional
Probab=89.79 E-value=5.9 Score=38.35 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=54.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||-.| |.|+.+.+++..+...| .|++.+.+..+++.+...+...+. ++.++..|..+..... ..+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 467777666 67888888887765444 799999999998888877765543 4666777876532110 124
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..+.
T Consensus 86 ~~d~li~~ag 95 (258)
T PRK06949 86 TIDILVNNSG 95 (258)
T ss_pred CCCEEEECCC
Confidence 6899988654
No 307
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=89.72 E-value=6.8 Score=38.05 Aligned_cols=126 Identities=12% Similarity=0.107 Sum_probs=72.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.| |.|+.+..++..+- ....|+..+.+...+..+...+...|. ++.++..|..+.... + ..+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 467788666 57888888887654 334899999999888888777776654 356677787653211 0 124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHH----HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~----l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
..|.|+..+.....+.+ ...+.+++.. ...-...++..+...+.. +..|.||+.++.
T Consensus 87 ~~d~li~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~g~iv~iss~ 147 (255)
T PRK07523 87 PIDILVNNAGMQFRTPL-------EDFPADAFERLLRTNISSVFYVGQAVARHMIA--RGAGKIINIASV 147 (255)
T ss_pred CCCEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hCCeEEEEEccc
Confidence 68999886543222211 1122233221 112223345555544311 245788887664
No 308
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=89.58 E-value=4.6 Score=39.07 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=55.2
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc---------ccc
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---------KVL 245 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~---------~~~ 245 (496)
+.++.+||=.| |.|+.+..++..+...| .|++++.+...+..+...+...+...+.+...|..... ...
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 34677788666 57788887776654334 89999999988888888887776555666666664211 000
Q ss_pred -CCCCcCEEEECCC
Q 010971 246 -GLNTVDRVLLDAP 258 (496)
Q Consensus 246 -~~~~fD~VLlDaP 258 (496)
..+.+|.|+..+-
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 1147899998664
No 309
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.50 E-value=6.1 Score=40.91 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=54.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+.+||=.| |+||.+..++..+.. ...|+.++.+..+++.+...+...|. .+.++..|..+..... ..+
T Consensus 6 ~~k~vlITG-As~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITG-ASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 456677444 567888888875543 34899999999999999888888775 3555667776532111 125
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.++..+-.
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 78999986643
No 310
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.15 E-value=0.83 Score=46.22 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=51.7
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+.+|+.-.|+||+|||.|-+|-. ..-.|+|+|.-+ +.+++...| .|..+..|+..+... ....|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVk---r~m~V~aVDng~-----ma~sL~dtg--~v~h~r~DGfk~~P~--r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVK---RNMRVYAVDNGP-----MAQSLMDTG--QVTHLREDGFKFRPT--RSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhh---cceEEEEeccch-----hhhhhhccc--ceeeeeccCcccccC--CCCCceEEe
Confidence 45899999999999999986654 345899999765 333443333 477888999887431 378999999
Q ss_pred CC
Q 010971 256 DA 257 (496)
Q Consensus 256 Da 257 (496)
|.
T Consensus 277 Dm 278 (358)
T COG2933 277 DM 278 (358)
T ss_pred eh
Confidence 85
No 311
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.97 E-value=1.9 Score=43.94 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=57.5
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCC-cE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-CCCCCccccCCCCc
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GL-IYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTV 250 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~-V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~-D~~~~~~~~~~~~f 250 (496)
+.+++|++||=.++ |+.+..++++.+.. .. |++.+.++.|++.+ ..+|+..+.-... +...+........|
T Consensus 159 ~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~----~~~ga~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 159 VGVSGRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERLELA----KALGADFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHhCCCEEEcCCcchHHHHHHHhCCCCC
Confidence 45678999998854 56655544433222 24 99999999987655 4567754321111 10111111222479
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|.|+- |+|.. ..+..+++++ ++||+++..
T Consensus 233 d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 261 (339)
T cd08239 233 DVAIE---CSGNT-------------------------AARRLALEAV----RPWGRLVLV 261 (339)
T ss_pred CEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 98874 44432 1345667776 899998743
No 312
>PLN02740 Alcohol dehydrogenase-like
Probab=88.83 E-value=2.7 Score=44.08 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=35.9
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.++ |+.++.++++....| .|+++|.++.|++.++ .+|...
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~ 246 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGK----EMGITD 246 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH----HcCCcE
Confidence 45788999998864 666665555443333 6999999999988774 478754
No 313
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.82 E-value=2.9 Score=43.11 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=35.2
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.+||+ |.-+.++|..++ ..|++.|.++.|++.+. .+|.+.
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~~ 213 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMK----GFGADL 213 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH----HhCCce
Confidence 3567899999988744 334445555553 37999999999887653 467754
No 314
>PRK13699 putative methylase; Provisional
Probab=88.79 E-value=1 Score=44.50 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=38.3
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG 227 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g 227 (496)
-.+|+.|||-+||+|+.... |..++ ...+++|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~a-a~~~~--r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVA-ALQSG--RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHH-HHHcC--CCEEEEecCHHHHHHHHHHHHHHH
Confidence 35899999999999976543 33332 478899999999999988887653
No 315
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=88.78 E-value=9.3 Score=37.20 Aligned_cols=130 Identities=14% Similarity=0.084 Sum_probs=73.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |+|+.+.+++..+-..| .|+.++.+...+..+...+...+. ++.++..|..+..... ..+
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466777666 67888998888764333 789999999888887777766553 4556778877642220 114
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHh-hhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM-VDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~-l~~~lkpGG~LVYSTCS 314 (496)
.+|.|+..+..+..+.+...+.-.| ...+.....-...++..+... +.. ++.|.+|+.+.+
T Consensus 89 ~id~vi~~ag~~~~~~~~~~~~~~~---~~~~~~n~~~~~~l~~~~~~~~l~~--~~~~~~v~~sS~ 150 (259)
T PRK08213 89 HVDILVNNAGATWGAPAEDHPVEAW---DKVMNLNVRGLFLLSQAVAKRSMIP--RGYGRIINVASV 150 (259)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHH---HHHHhHHhHHHHHHHHHHHHHHHHh--cCCeEEEEECCh
Confidence 6899998665433222222221111 111222233344455555443 211 344677776553
No 316
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.60 E-value=7.6 Score=37.10 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=51.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||-.|+ +|+.+.++++.+...| .|++.+.+...+..+...+...+ ++.++..|..+..... ..+
T Consensus 4 ~~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3567887776 5888888887764434 89999999988877765554433 5667777876532110 014
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.|+..+
T Consensus 81 ~id~ii~~a 89 (238)
T PRK05786 81 AIDGLVVTV 89 (238)
T ss_pred CCCEEEEcC
Confidence 579888755
No 317
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.50 E-value=2.4 Score=42.97 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=55.7
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC-CCcc---ccCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN-ELPK---VLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~-~~~~---~~~~~ 248 (496)
..+++|++||=.++ .|+.+..++++.+.. ..|++.+.+..+.+.+ ..+|++.+. ..+.. .+.. .....
T Consensus 134 ~~~~~g~~VLI~ga-~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~----~~lGa~~vi--~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 134 CGVKGGETVMVNAA-AGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL----KKLGFDVAF--NYKTVKSLEETLKKASPD 206 (325)
T ss_pred hCCCCCCEEEEeCC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----HHcCCCEEE--eccccccHHHHHHHhCCC
Confidence 35788999997664 344444443333322 3789999998887666 347875432 22211 1111 11124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
.+|.|| | |+|.. .+..+++++ ++||++|-
T Consensus 207 gvdvv~-d--~~G~~--------------------------~~~~~~~~l----~~~G~iv~ 235 (325)
T TIGR02825 207 GYDCYF-D--NVGGE--------------------------FSNTVIGQM----KKFGRIAI 235 (325)
T ss_pred CeEEEE-E--CCCHH--------------------------HHHHHHHHh----CcCcEEEE
Confidence 689887 4 44421 245666776 99999973
No 318
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.26 E-value=9.1 Score=37.69 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=47.0
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCCCc-EEEEEeCC---HHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c----
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKNTG-LIYANEMK---ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L---- 245 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~~g-~V~A~D~s---~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~---- 245 (496)
.|.++|-.|+++ +|.+..++..+-..| .|+..+.+ ..+++.+.. .+.-.++.++..|..+.... +
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELAD---TLEGQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHH---HcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence 467889888884 889988887665334 67766654 334444433 33223466677787654211 0
Q ss_pred -CCCCcCEEEECC
Q 010971 246 -GLNTVDRVLLDA 257 (496)
Q Consensus 246 -~~~~fD~VLlDa 257 (496)
..+.+|.++..|
T Consensus 83 ~~~g~ld~lv~na 95 (257)
T PRK08594 83 EEVGVIHGVAHCI 95 (257)
T ss_pred HhCCCccEEEECc
Confidence 126789888765
No 319
>PRK08324 short chain dehydrogenase; Validated
Probab=88.16 E-value=7.6 Score=44.35 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=69.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|..||=.| |.|+.+.+++..+... ..|+++|.+..++..+...+... .++.++..|..+.... + ..+
T Consensus 421 ~gk~vLVTG-asggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTG-AAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467777554 4678888877765433 48999999998887776655432 3566777787653211 1 124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHH----HHHHHHHHHHHHHHHhhhhcCCC---CcEEEEEeC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ----KCSYLQKQLILAAIDMVDANSKS---GGYIVYSTC 313 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~----~l~~lQ~~LL~~A~~~l~~~lkp---GG~LVYSTC 313 (496)
.+|.|+..+-.+..+.+.. .+.++.. ....-...++..++..+ +. ||.||+.+-
T Consensus 498 ~iDvvI~~AG~~~~~~~~~-------~~~~~~~~~~~~N~~g~~~l~~~~~~~l----~~~~~~g~iV~vsS 558 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEE-------TSDEDWRRSFDVNATGHFLVAREAVRIM----KAQGLGGSIVFIAS 558 (681)
T ss_pred CCCEEEECCCCCCCCChhh-------CCHHHHHHHHHHHhHHHHHHHHHHHHHH----HhcCCCcEEEEECC
Confidence 7899988654333332211 1222221 22222344566666665 33 677776543
No 320
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.02 E-value=2.7 Score=42.38 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=57.7
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc---cccCCCCc
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---KVLGLNTV 250 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~---~~~~~~~f 250 (496)
.+++|++||..++|+ |..++++|..++ ..|++.+.++.+.+.++ .+|+..+.. .....+. .......+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~----~~g~~~~~~--~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAK----ELGADEVLN--SLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----HhCCCEEEc--CCCcCHHHHHHHhcCCCc
Confidence 367899999965432 444555566553 46899999998876653 367654322 1111111 11223579
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|.|+- |+|.+ ..+..+++.+ ++||+++..
T Consensus 234 D~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 262 (338)
T cd08254 234 DVIFD---FVGTQ-------------------------PTFEDAQKAV----KPGGRIVVV 262 (338)
T ss_pred eEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 98864 44432 1356677776 999998864
No 321
>PRK05599 hypothetical protein; Provisional
Probab=88.00 E-value=7.7 Score=37.83 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=52.9
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCcCE
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDR 252 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~fD~ 252 (496)
.||=.| |++|.+..++..+.....|+..+.+..+++.+.+.++..|...+.++..|..+..... ..+..|.
T Consensus 2 ~vlItG-as~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILILG-GTSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEEe-CccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 355344 4677788888766555688888999999998888888776555667778877642211 1257899
Q ss_pred EEECC
Q 010971 253 VLLDA 257 (496)
Q Consensus 253 VLlDa 257 (496)
++..+
T Consensus 81 lv~na 85 (246)
T PRK05599 81 AVVAF 85 (246)
T ss_pred EEEec
Confidence 98754
No 322
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.89 E-value=11 Score=36.86 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=53.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHH-cCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r-~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.+.+||=.|++.+|.+..++..+... ..|+.+|.+..+++...+.+.. +|..++.++..|..+.... + ..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERL 95 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46778777765236777777655332 4788999999888888777765 5555677788888753211 1 11
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+..|.|+..+-
T Consensus 96 g~id~li~~ag 106 (262)
T PRK07831 96 GRLDVLVNNAG 106 (262)
T ss_pred CCCCEEEECCC
Confidence 56899988654
No 323
>PRK07890 short chain dehydrogenase; Provisional
Probab=87.87 E-value=8.2 Score=37.34 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=52.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+.+||=.| |+|+.+.+++..+-.. ..|+.++.++..++.+...+...+. ++.++..|..+.... + ..+
T Consensus 4 ~~k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 356777444 5778888888766433 4899999999888888777766553 466777887653211 0 125
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
..|.|+..+
T Consensus 82 ~~d~vi~~a 90 (258)
T PRK07890 82 RVDALVNNA 90 (258)
T ss_pred CccEEEECC
Confidence 689998865
No 324
>PRK07102 short chain dehydrogenase; Provisional
Probab=87.79 E-value=9.6 Score=36.70 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=52.7
Q ss_pred eEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc---C--CCCcCEEE
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---G--LNTVDRVL 254 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~---~--~~~fD~VL 254 (496)
+||-.| |+|+.+.+++..+-..| .|++++.++.....+...+...+-.++.++..|..+..... . ...+|.|+
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv 81 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL 81 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence 566444 67888888887664444 89999999988887777766554457888888887653211 0 13579999
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
..+.
T Consensus 82 ~~ag 85 (243)
T PRK07102 82 IAVG 85 (243)
T ss_pred ECCc
Confidence 8664
No 325
>PRK06194 hypothetical protein; Provisional
Probab=87.78 E-value=9.1 Score=37.89 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=54.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+|| +.-|.|+.+.+++..+... ..|+.+|.+...+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56777 5556788898888765433 4789999998887777666655443 466778888764221 1 1146
Q ss_pred cCEEEECCCCCCC
Q 010971 250 VDRVLLDAPCSGT 262 (496)
Q Consensus 250 fD~VLlDaPCSg~ 262 (496)
+|.|+..|--++.
T Consensus 84 id~vi~~Ag~~~~ 96 (287)
T PRK06194 84 VHLLFNNAGVGAG 96 (287)
T ss_pred CCEEEECCCCCCC
Confidence 8999987654433
No 326
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=87.68 E-value=3.7 Score=43.58 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=31.8
Q ss_pred CCCCCCeEeeccC-C-CchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHH
Q 010971 175 APQEKERVIDMAA-A-PGGKTTYIAALMK-NTGLIYANEMKASRLKSLTAN 222 (496)
Q Consensus 175 ~~~~g~~VLDmcA-g-pGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~n 222 (496)
.+++|++||=+++ | -|..++++|..++ +...|++.|.++.|++.+++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4678999887653 3 2333344555442 223799999999999988764
No 327
>PRK08251 short chain dehydrogenase; Provisional
Probab=87.58 E-value=15 Score=35.39 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=53.8
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecCCCCCcccc--------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g-~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
+.+||=.| |+||.+.+++..+... ..|+..+.++.++..+...+.... -.++.++..|..+..... ..+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34566555 6788888888765433 488899999999888877765542 235777788887642110 125
Q ss_pred CcCEEEECCCCC
Q 010971 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~fD~VLlDaPCS 260 (496)
..|.|+..+-.+
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 689999866443
No 328
>PRK12937 short chain dehydrogenase; Provisional
Probab=87.10 E-value=8.1 Score=37.00 Aligned_cols=125 Identities=21% Similarity=0.243 Sum_probs=69.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
+.+||=.| |.|+.+.+++..+...| .|+.+.. +......+.+.+...+. ++.++..|..+.... + ..+
T Consensus 5 ~~~vlItG-~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 5 NKVAIVTG-ASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGG-RAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45566444 56888988888765444 5555443 45556666666666553 567777887654211 1 124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l----~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~ 316 (496)
..|.|+..+.-.+.+.+ +..+.++.... ..-...++..++..+ +.+|.||+.+++..
T Consensus 83 ~id~vi~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~----~~~~~iv~~ss~~~ 143 (245)
T PRK12937 83 RIDVLVNNAGVMPLGTI-------ADFDLEDFDRTIATNLRGAFVVLREAARHL----GQGGRIINLSTSVI 143 (245)
T ss_pred CCCEEEECCCCCCCCCh-------hhCCHHHHHHHHhhhchHHHHHHHHHHHHh----ccCcEEEEEeeccc
Confidence 68999986532111111 11223333221 122234455555554 67899999987643
No 329
>PRK07904 short chain dehydrogenase; Provisional
Probab=87.05 E-value=8.1 Score=37.96 Aligned_cols=78 Identities=9% Similarity=0.146 Sum_probs=53.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC--cEEEEEeCCHHH-HHHHHHHHHHcCCCeEEEEecCCCCCcc-------ccCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASR-LKSLTANLHRMGVTNTIVCNYDGNELPK-------VLGL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~--g~V~A~D~s~~r-l~~l~~nl~r~g~~nv~v~~~D~~~~~~-------~~~~ 247 (496)
.+.+||-.| |+||.+.+++..+-.. ..|++.+.+... ++.+.+.+...+..++.++..|..+... ....
T Consensus 7 ~~~~vlItG-as~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLG-GTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEc-CCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 455676555 4788999988764332 388899988875 7777777777775578888888765432 1112
Q ss_pred CCcCEEEEC
Q 010971 248 NTVDRVLLD 256 (496)
Q Consensus 248 ~~fD~VLlD 256 (496)
+..|.++..
T Consensus 86 g~id~li~~ 94 (253)
T PRK07904 86 GDVDVAIVA 94 (253)
T ss_pred CCCCEEEEe
Confidence 479988873
No 330
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=86.91 E-value=15 Score=35.37 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=51.6
Q ss_pred eEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc-------ccc-CCCCcC
Q 010971 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-------KVL-GLNTVD 251 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~-------~~~-~~~~fD 251 (496)
+||=.| |+|+.+.+++..+- ....|++++.+....+.+...+...+. ++.++..|..+.. ... .....|
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG-SVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 455444 66888888886553 334899999999888888777765553 5777778877643 110 124689
Q ss_pred EEEECCCCC
Q 010971 252 RVLLDAPCS 260 (496)
Q Consensus 252 ~VLlDaPCS 260 (496)
.|+..+-.+
T Consensus 81 ~vi~~a~~~ 89 (255)
T TIGR01963 81 ILVNNAGIQ 89 (255)
T ss_pred EEEECCCCC
Confidence 999866433
No 331
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=86.76 E-value=9.9 Score=36.79 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=54.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
|.+|| +..|+|+.+.+++..+... ..|++++.++..+..+.+.+...|. ++.++..|..+..... ..+.
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56677 5566788888888765433 4889999999888888887776654 4667788877643211 1145
Q ss_pred cCEEEECCCCC
Q 010971 250 VDRVLLDAPCS 260 (496)
Q Consensus 250 fD~VLlDaPCS 260 (496)
.|.|+..+-+.
T Consensus 85 ~d~vi~~ag~~ 95 (262)
T PRK13394 85 VDILVSNAGIQ 95 (262)
T ss_pred CCEEEECCccC
Confidence 89998865443
No 332
>PRK08643 acetoin reductase; Validated
Probab=86.65 E-value=12 Score=36.22 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=51.8
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCCc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTV 250 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~f 250 (496)
..|| +..|+|+.+.+++..+-..| .|+.++.+..++..+...+...+. ++.++..|..+.... + ..+..
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG-KAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 3455 44577888888887664334 899999999888888888776653 566777887764211 0 12468
Q ss_pred CEEEECC
Q 010971 251 DRVLLDA 257 (496)
Q Consensus 251 D~VLlDa 257 (496)
|.|+..+
T Consensus 81 d~vi~~a 87 (256)
T PRK08643 81 NVVVNNA 87 (256)
T ss_pred CEEEECC
Confidence 9998855
No 333
>PRK07832 short chain dehydrogenase; Provisional
Probab=86.60 E-value=7.5 Score=38.35 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=45.9
Q ss_pred cCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCCcCEEEEC
Q 010971 186 AAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVDRVLLD 256 (496)
Q Consensus 186 cAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~fD~VLlD 256 (496)
..|+|+.+..++..+.. ...|+.++.+...+..+...+...+...+.+...|..+.... . ..+.+|.|+..
T Consensus 6 tGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ 85 (272)
T PRK07832 6 TGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNI 85 (272)
T ss_pred eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 34567888887775543 347888899888888777777666644444456676543110 0 12468999875
Q ss_pred C
Q 010971 257 A 257 (496)
Q Consensus 257 a 257 (496)
+
T Consensus 86 a 86 (272)
T PRK07832 86 A 86 (272)
T ss_pred C
Confidence 4
No 334
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.51 E-value=18 Score=36.22 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=47.4
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|..||=.|++. +|.+..+|..+... ..|+.++.+....+.+.+....++.. .++..|..+..... ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHHHHHHHHHHc
Confidence 367788888774 68888888765433 47888888753233344334444533 35567877643210 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+.+|.++.+|
T Consensus 82 g~iDilVnnA 91 (274)
T PRK08415 82 GKIDFIVHSV 91 (274)
T ss_pred CCCCEEEECC
Confidence 6789988866
No 335
>PLN02827 Alcohol dehydrogenase-like
Probab=86.35 E-value=3.5 Score=43.29 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=58.8
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~ 247 (496)
..+++|++||=.++ |+.+..++++....| .|+++|.++.+++.+ +.+|++.+.-...+...+. ... .
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a----~~lGa~~~i~~~~~~~~~~~~v~~~~-~ 261 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA----KTFGVTDFINPNDLSEPIQQVIKRMT-G 261 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH----HHcCCcEEEcccccchHHHHHHHHHh-C
Confidence 34678999998864 666655544433223 588999999887655 4578754321111001111 111 1
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEEe
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYST 312 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpG-G~LVYST 312 (496)
+.+|.||- |+|.. ..+..+++++ ++| |++|..-
T Consensus 262 ~g~d~vid---~~G~~-------------------------~~~~~~l~~l----~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFE---CVGDT-------------------------GIATTALQSC----SDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEE---CCCCh-------------------------HHHHHHHHhh----ccCCCEEEEEC
Confidence 36998873 66642 1356677776 898 9997543
No 336
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.26 E-value=5.9 Score=42.44 Aligned_cols=117 Identities=14% Similarity=0.193 Sum_probs=73.4
Q ss_pred CCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHc---CC----------CeEEEEecCCCCCccccCCCCcCEE
Q 010971 188 APGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRM---GV----------TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 188 gpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~---g~----------~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
|-|..++.+|..+...| .|+++|+++.+++.+..--... +. ..... ..|+ ..+ ...|++
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra-Ttd~----~~l--~~~dv~ 88 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA-TTDP----EEL--KECDVF 88 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE-ecCh----hhc--ccCCEE
Confidence 56667777776655444 8999999999998875321100 00 00111 0111 112 357777
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~ 331 (496)
++=+|---.+ .++|++. .+.+|++.+.+.|++|-.+|+ ..|..|--.|+++..+|+..
T Consensus 89 iI~VPTPl~~--~~~pDls-----------------~v~~aa~sIa~~L~kG~LVIl-EST~~PGTTe~v~~plle~~ 146 (436)
T COG0677 89 IICVPTPLKK--YREPDLS-----------------YVESAARSIAPVLKKGDLVIL-ESTTPPGTTEEVVKPLLEER 146 (436)
T ss_pred EEEecCCcCC--CCCCChH-----------------HHHHHHHHHHHhcCCCCEEEE-ecCCCCCcHHHHHHHHHhhc
Confidence 7765533333 2667653 367777888888899665554 67788999999999999873
No 337
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.11 E-value=16 Score=35.08 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=50.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEE-EeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYA-NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A-~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
+|.+||=.| |+|+.+.+++..+...| .|+. .+.+......+...++..+. ++.++..|..+.... + ..
T Consensus 3 ~~~~vlItG-a~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 3 SGKVALVTG-SSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR-KALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 355677444 56888988887765445 5554 46677777777777766653 466667887654211 1 11
Q ss_pred CCcCEEEECCCC
Q 010971 248 NTVDRVLLDAPC 259 (496)
Q Consensus 248 ~~fD~VLlDaPC 259 (496)
+..|.|+..+..
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 468999987643
No 338
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=86.11 E-value=1.2 Score=47.27 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=59.7
Q ss_pred HhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCCccccCCCCc
Q 010971 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 172 ~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~~~~~~~~~f 250 (496)
......++..++|++||-|+-+.+++..- ...++++|.+.-.+.+........++.+ -.++..|....| +.++.|
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~--fedn~f 179 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP--FEDNTF 179 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC--CCcccc
Confidence 33345677899999999999999998763 3578999999999988888887777765 233556666554 345789
Q ss_pred CEEE
Q 010971 251 DRVL 254 (496)
Q Consensus 251 D~VL 254 (496)
|.|-
T Consensus 180 d~v~ 183 (364)
T KOG1269|consen 180 DGVR 183 (364)
T ss_pred CcEE
Confidence 9874
No 339
>PRK12829 short chain dehydrogenase; Provisional
Probab=86.05 E-value=13 Score=35.96 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=52.5
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----C
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----G 246 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~ 246 (496)
..++.+||-.|+. |+.+.+++..+-. ...|++++.++..+..+.....+. ++.++..|..+.... + .
T Consensus 8 ~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 8 PLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---KVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred ccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3467889977764 8888888776543 347999999988777665555432 566777887754321 1 0
Q ss_pred CCCcCEEEECCC
Q 010971 247 LNTVDRVLLDAP 258 (496)
Q Consensus 247 ~~~fD~VLlDaP 258 (496)
.+.+|.|+..+.
T Consensus 84 ~~~~d~vi~~ag 95 (264)
T PRK12829 84 FGGLDVLVNNAG 95 (264)
T ss_pred hCCCCEEEECCC
Confidence 146899988654
No 340
>PRK07109 short chain dehydrogenase; Provisional
Probab=86.00 E-value=15 Score=37.92 Aligned_cols=126 Identities=16% Similarity=0.167 Sum_probs=73.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+..||=.| |+||.+..++..+.. ...|+.++.+..+++.+...+...|. ++.++..|..+..... ..+
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 455666555 567888888775543 34899999999999988888887775 4666777876642211 125
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYL----QKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~l----Q~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+|.++..+-.+..+.+ ...+.+++...... ...+...++..+.. ..+|.||+.+..
T Consensus 85 ~iD~lInnAg~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~--~~~g~iV~isS~ 145 (334)
T PRK07109 85 PIDTWVNNAMVTVFGPF-------EDVTPEEFRRVTEVTYLGVVHGTLAALRHMRP--RDRGAIIQVGSA 145 (334)
T ss_pred CCCEEEECCCcCCCCch-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--cCCcEEEEeCCh
Confidence 78999886543222211 12334444332211 23344455554411 235888875443
No 341
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=85.95 E-value=14 Score=35.89 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=54.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+..||=.| |+|+.+.+++..+-.. ..|+..+.+...+..+...+...+. .+.++..|..+..... ..+
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 355676555 5678888888766543 4888999999888888777776553 4556677876542110 125
Q ss_pred CcCEEEECCCCC
Q 010971 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~fD~VLlDaPCS 260 (496)
.+|.|+..+-..
T Consensus 86 ~id~vi~~ag~~ 97 (254)
T PRK08085 86 PIDVLINNAGIQ 97 (254)
T ss_pred CCCEEEECCCcC
Confidence 689999866443
No 342
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=85.79 E-value=1.7 Score=41.53 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=62.6
Q ss_pred CCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHH------------HHHcC-CCeEEEEecCCCCCccccCCCCcCEE
Q 010971 188 APGGKTTYIAALMKNTG-LIYANEMKASRLKSLTAN------------LHRMG-VTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 188 gpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~n------------l~r~g-~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
|.|-.++.+|..+...| .|+++|+++.++..+.+- +++.. ..+..+. .|.. ... ...|.|
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~---~ai--~~adv~ 80 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIE---EAI--KDADVV 80 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHH---HHH--HH-SEE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhh---hhh--hccceE
Confidence 55666666666555455 899999999999887632 22221 1233332 2221 111 457888
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~ 331 (496)
++-.|+=-.+ ...|+.. .+.+|++.+..++++ |.+|.--+|+.|--.++++..+|++.
T Consensus 81 ~I~VpTP~~~--~~~~Dls-----------------~v~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 81 FICVPTPSDE--DGSPDLS-----------------YVESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp EE----EBET--TTSBETH-----------------HHHHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred EEecCCCccc--cCCccHH-----------------HHHHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhhhh
Confidence 8866532111 1222321 244444444444577 55556678888888888999999864
No 343
>PRK08339 short chain dehydrogenase; Provisional
Probab=85.74 E-value=21 Score=35.12 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=51.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c----CCCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L----GLNT 249 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~----~~~~ 249 (496)
.|.++|=.| |+||.+..++..+-. ...|+.++.+...++.+.+.+....-.++.++..|..+.... + ..+.
T Consensus 7 ~~k~~lItG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTA-SSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 355666555 556778877776543 348999999999988888777654223566777887764211 1 1256
Q ss_pred cCEEEECC
Q 010971 250 VDRVLLDA 257 (496)
Q Consensus 250 fD~VLlDa 257 (496)
+|.++..+
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 89888754
No 344
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.64 E-value=18 Score=36.04 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=47.3
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|..+|-.|++. +|.+..+|..+-.. ..|+.++.+....+.+.+....+|. ..++..|..+..... ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467888888876 47888777766433 4777777765444444444444453 235667877642110 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+.+|.++.+|
T Consensus 84 g~iD~lVnnA 93 (271)
T PRK06505 84 GKLDFVVHAI 93 (271)
T ss_pred CCCCEEEECC
Confidence 6789888765
No 345
>PRK09135 pteridine reductase; Provisional
Probab=85.53 E-value=14 Score=35.32 Aligned_cols=127 Identities=13% Similarity=0.029 Sum_probs=69.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCC-HHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s-~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.+.+||-.|| .|+.+.+++..+. ....|++++.+ ...+..+...+...+-.++.++..|.++..... ..
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567887775 6888888887654 33488888874 455666655555544445777788887643221 01
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+..|.|+.-+.....+.+.. ..+..-...+.....-...|+..++..+. +.+|.+++.
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~---~~~~~~~~~~~~n~~g~~~l~~~~~~~~~---~~~~~~~~~ 141 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGS---ITEAQWDDLFASNLKAPFFLSQAAAPQLR---KQRGAIVNI 141 (249)
T ss_pred CCCCEEEECCCCCCCCChhh---CCHHHHHHHHHHhchhHHHHHHHHHHHHh---hCCeEEEEE
Confidence 45799988553222211111 00100011222333445557777766551 446666654
No 346
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=85.43 E-value=4.2 Score=42.36 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=59.0
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~~ 248 (496)
..+++|++||=.++ |+.+..++++.+..| .|+++|.++.|++.+. .+|+..+ ++.+...+... ...+
T Consensus 187 ~~i~~g~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~~--i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 187 AGVRPGQSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNEDKLALAR----ELGATAT--VNAGDPNAVEQVRELTGG 258 (371)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HcCCceE--eCCCchhHHHHHHHHhCC
Confidence 34678999998765 555554444433223 6999999999987664 4777543 22221121111 1123
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.+|+||- |+|.+ ..+..+++++ ++||++|...
T Consensus 259 g~d~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 290 (371)
T cd08281 259 GVDYAFE---MAGSV-------------------------PALETAYEIT----RRGGTTVTAG 290 (371)
T ss_pred CCCEEEE---CCCCh-------------------------HHHHHHHHHH----hcCCEEEEEc
Confidence 6898874 55532 1356677776 9999987543
No 347
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=85.43 E-value=16 Score=34.84 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=52.2
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+||=.| |+|+.+.+++..+.. ...|++++.+...+..+...+...+. ++.+...|..+.... + ..+.
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG-KARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 56788555 468888887765433 34899999998888777777765543 467777787653211 1 1136
Q ss_pred cCEEEECCCC
Q 010971 250 VDRVLLDAPC 259 (496)
Q Consensus 250 fD~VLlDaPC 259 (496)
+|.|+..+..
T Consensus 84 ~d~vi~~ag~ 93 (251)
T PRK12826 84 LDILVANAGI 93 (251)
T ss_pred CCEEEECCCC
Confidence 8999887643
No 348
>PRK07063 short chain dehydrogenase; Provisional
Probab=85.31 E-value=14 Score=35.98 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=52.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|.+||-.|+ +||.+.+++..+-. ...|+.++.+...++.+...+...+. .++.++..|..+.... + ..
T Consensus 6 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3567776665 57788888776543 34899999999988888877765321 2466777887654211 1 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+.+|.++..+
T Consensus 85 g~id~li~~a 94 (260)
T PRK07063 85 GPLDVLVNNA 94 (260)
T ss_pred CCCcEEEECC
Confidence 5789998855
No 349
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=85.25 E-value=12 Score=36.04 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=50.2
Q ss_pred CCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCcCEEEECC
Q 010971 187 AAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDRVLLDA 257 (496)
Q Consensus 187 AgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~fD~VLlDa 257 (496)
.|.|+.+.+++..+-. ...|+.++.+..++..+...+...+. ++.++..|..+..... ..+..|.|+..+
T Consensus 7 G~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~a 85 (254)
T TIGR02415 7 GGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNA 85 (254)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3568888888766533 34888999998888877777766654 4667778876532111 114679999877
Q ss_pred CCCCCC
Q 010971 258 PCSGTG 263 (496)
Q Consensus 258 PCSg~G 263 (496)
.....+
T Consensus 86 g~~~~~ 91 (254)
T TIGR02415 86 GVAPIT 91 (254)
T ss_pred CcCCCC
Confidence 654433
No 350
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=85.19 E-value=5.4 Score=41.73 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=37.6
Q ss_pred CCeEeeccCCCchHHHHHHHHc--------CCC-------cEEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEecCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALM--------KNT-------GLIYANEMKASRLKSLTANLHRM-----GVTNTIVCNYDG 238 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~--------~~~-------g~V~A~D~s~~rl~~l~~nl~r~-----g~~nv~v~~~D~ 238 (496)
--+|+|+||+.|..|+.+.+.+ ... -.|+-+|+=..=...+-..+... ...++-+.-.-+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 4589999999999998655432 112 27888886433333333333222 123443333233
Q ss_pred CCCccccCCCCcCEEEE
Q 010971 239 NELPKVLGLNTVDRVLL 255 (496)
Q Consensus 239 ~~~~~~~~~~~fD~VLl 255 (496)
..+...++.++.|.+..
T Consensus 97 SFy~rLfP~~Svh~~~S 113 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHS 113 (334)
T ss_dssp -TTS--S-TT-EEEEEE
T ss_pred hhhhccCCCCceEEEEE
Confidence 33455556678888864
No 351
>PRK09186 flagellin modification protein A; Provisional
Probab=85.17 E-value=12 Score=36.08 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=50.9
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHH-cCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r-~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
|.+||=.| |+|+.+.+++..+... ..|+..+.++..+..+...+.. .+-..+.++..|..+.... + ..+
T Consensus 4 ~k~vlItG-as~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILITG-AGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 55666555 5688898888776544 4888889998888777766643 3434455667787653211 1 114
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
..|.|+..|
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 589999876
No 352
>PRK05876 short chain dehydrogenase; Provisional
Probab=84.83 E-value=19 Score=35.89 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=52.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.|+ +||.+.+++..+... ..|+..|.+...+..+...+...|. .+.++..|..+..... ..+
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 3566775554 577888888765433 4788899999888887777766554 4666777876643211 124
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
..|.|+..|-
T Consensus 83 ~id~li~nAg 92 (275)
T PRK05876 83 HVDVVFSNAG 92 (275)
T ss_pred CCCEEEECCC
Confidence 6899988664
No 353
>PRK05872 short chain dehydrogenase; Provisional
Probab=84.70 E-value=10 Score=38.19 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=49.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||-.| |+||.+.+++..+... ..|+.++.+..+++.+...+.. + ..+..+..|..+..... ..+
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467787555 5677888888766433 4888999999887776655431 2 23445557776532110 125
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..+-
T Consensus 85 ~id~vI~nAG 94 (296)
T PRK05872 85 GIDVVVANAG 94 (296)
T ss_pred CCCEEEECCC
Confidence 7899998664
No 354
>PRK05867 short chain dehydrogenase; Provisional
Probab=84.54 E-value=12 Score=36.25 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=53.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.|+ +||.+.+++..+-.. ..|+.++.+...++.+...+...+ .++.++..|..+..... ..+
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4667776665 567777777765433 488899999998888888777666 34666778876542110 125
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.++..+-
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 7899988653
No 355
>PRK07774 short chain dehydrogenase; Provisional
Probab=84.50 E-value=15 Score=35.40 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+.+||= .-|+|+.+.+++..+-.. ..|+..+.+...+..+...+...+. ++.++..|..+..... ..+
T Consensus 5 ~~k~vlI-tGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIV-TGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG-TAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3556664 447788898888765433 4899999988777776666654332 4556677877643210 014
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.|+..+..
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999986643
No 356
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.44 E-value=17 Score=35.46 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=46.5
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||-.|++. +|.+..++..+-.. ..|+.++.+. +... .++.+.-..+.++..|..+..... ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~---~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKK---SLQKLVDEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHH---HHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467888888875 68888888766433 4788887763 3322 223322234667778886532110 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+.+|.++.+|
T Consensus 82 g~iD~lv~nA 91 (252)
T PRK06079 82 GKIDGIVHAI 91 (252)
T ss_pred CCCCEEEEcc
Confidence 5789988866
No 357
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=84.37 E-value=3.6 Score=41.33 Aligned_cols=73 Identities=18% Similarity=0.101 Sum_probs=49.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
+..+|||++||-=-.++....... ....+|.|++...++.+..-+..+|+.. .+...|...-+ +....|+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~~-~~~v~Dl~~~~---~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVPH-DARVRDLLSDP---PKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-CE-EEEEE-TTTSH---TTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCCc-ceeEeeeeccC---CCCCcchhhH
Confidence 368999999998877764443322 3589999999999999999999999864 23334554322 1256899987
No 358
>PRK07062 short chain dehydrogenase; Provisional
Probab=84.31 E-value=29 Score=33.80 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=52.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|..+|=.| |+||.+.+++..+. ....|++++.+..++..+...+....- .++.++..|..+..... ..
T Consensus 7 ~~k~~lItG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTG-GSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 366777666 45667777776653 335899999999988887776655422 35667777877643211 12
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..|-
T Consensus 86 g~id~li~~Ag 96 (265)
T PRK07062 86 GGVDMLVNNAG 96 (265)
T ss_pred CCCCEEEECCC
Confidence 56899988653
No 359
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=84.21 E-value=14 Score=35.83 Aligned_cols=79 Identities=9% Similarity=0.123 Sum_probs=50.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecCCCCCcccc--------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~-g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
+..||=.| |.|+.+.+++..+... ..|+.+|.+...++.+...+... +-.++.++..|..+..... ..+
T Consensus 2 ~k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34567666 4577888777665433 48899999988887776665442 3235777788877532111 114
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
..|.|+..+-
T Consensus 81 ~id~vv~~ag 90 (259)
T PRK12384 81 RVDLLVYNAG 90 (259)
T ss_pred CCCEEEECCC
Confidence 6899888653
No 360
>PRK09291 short chain dehydrogenase; Provisional
Probab=84.17 E-value=17 Score=35.09 Aligned_cols=77 Identities=19% Similarity=0.119 Sum_probs=51.1
Q ss_pred CeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--CCCCcCEEEEC
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDRVLLD 256 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--~~~~fD~VLlD 256 (496)
.+||=. .|+|+.+.+++..+.. ...|++.+.+...+..+.......+. .+.++..|..+..... .....|.|+..
T Consensus 3 ~~vlVt-Gasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILIT-GAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEe-CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 356644 4578888888876543 34899999888888777776666654 3666777876542221 12379999986
Q ss_pred CC
Q 010971 257 AP 258 (496)
Q Consensus 257 aP 258 (496)
+-
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 53
No 361
>PRK08267 short chain dehydrogenase; Provisional
Probab=84.08 E-value=11 Score=36.59 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=48.1
Q ss_pred eEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-------C--CCCc
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------G--LNTV 250 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-------~--~~~f 250 (496)
+||-.| |+|+.+..++..+...| .|++++.+...+..+...+. -.++.++..|..+..... . .+.+
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---AGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 345444 56788888877654444 88999999888777755543 235677788887643211 0 3578
Q ss_pred CEEEECCC
Q 010971 251 DRVLLDAP 258 (496)
Q Consensus 251 D~VLlDaP 258 (496)
|.|+..+-
T Consensus 79 d~vi~~ag 86 (260)
T PRK08267 79 DVLFNNAG 86 (260)
T ss_pred CEEEECCC
Confidence 99998554
No 362
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=83.85 E-value=2.2 Score=43.93 Aligned_cols=123 Identities=20% Similarity=0.201 Sum_probs=83.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--CeEEEEecCCCCCccccCCCCcCEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~--g~--~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.-..||=++-|-||..-..+.. +.-+.|+-+|++..-++.-++-+..+ |. ..|.+..+|+..|-+..+.+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3468999999999976544333 33467899999998888877766655 33 3477888899888666666899999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~ 329 (496)
++|-. +|. ...++..|+....-..+.| |+||+++. . .|+..+-..+++
T Consensus 200 i~dss---------dpv---------gpa~~lf~~~~~~~v~~aL----k~dgv~~~----q--~ec~wl~~~~i~ 247 (337)
T KOG1562|consen 200 ITDSS---------DPV---------GPACALFQKPYFGLVLDAL----KGDGVVCT----Q--GECMWLHLDYIK 247 (337)
T ss_pred EEecC---------Ccc---------chHHHHHHHHHHHHHHHhh----CCCcEEEE----e--cceehHHHHHHH
Confidence 99842 111 2234556666666555554 99999843 2 466666555554
No 363
>PRK06940 short chain dehydrogenase; Provisional
Probab=83.50 E-value=23 Score=35.21 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=50.7
Q ss_pred eEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c----CCCCcCEE
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L----GLNTVDRV 253 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~----~~~~fD~V 253 (496)
.||=.|| ||.+.+++..+.....|+.+|.+...++.+.+.+...|. ++.++..|..+.... + ..+.+|.|
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4454443 689999998886545899999998888777776665553 456667787654211 1 12568999
Q ss_pred EECCC
Q 010971 254 LLDAP 258 (496)
Q Consensus 254 LlDaP 258 (496)
+..|-
T Consensus 81 i~nAG 85 (275)
T PRK06940 81 VHTAG 85 (275)
T ss_pred EECCC
Confidence 88663
No 364
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=83.46 E-value=5.4 Score=40.52 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=63.7
Q ss_pred CeEeeccCCC--chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCC----CCcC--
Q 010971 180 ERVIDMAAAP--GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL----NTVD-- 251 (496)
Q Consensus 180 ~~VLDmcAgp--GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~----~~fD-- 251 (496)
...||+|||- -+.+-.+|+...+...|+-+|.++--+...+..+....-..+.++.+|.+.....+.. +.+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 5799999993 3456678888888899999999999998888888765433478999999886544421 1122
Q ss_pred ---EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 252 ---RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 252 ---~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.||+ .|++---|+ .++. ..++..-.+.| .||.+|+.|..+-
T Consensus 150 rPVavll------~~vLh~v~D------~~dp-------~~iv~~l~d~l----apGS~L~ish~t~ 193 (267)
T PF04672_consen 150 RPVAVLL------VAVLHFVPD------DDDP-------AGIVARLRDAL----APGSYLAISHATD 193 (267)
T ss_dssp S--EEEE------CT-GGGS-C------GCTH-------HHHHHHHHCCS-----TT-EEEEEEEB-
T ss_pred CCeeeee------eeeeccCCC------ccCH-------HHHHHHHHHhC----CCCceEEEEecCC
Confidence 2333 123221111 1111 33566666665 9999999998764
No 365
>PRK06196 oxidoreductase; Provisional
Probab=83.40 E-value=16 Score=37.09 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=50.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.| |+||.+.+++..+... ..|++++.+..++..+...+. ++.++..|..+..... ..+
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 356777555 5688888888765433 488899999888776655543 2556777877643210 125
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
..|.|+..|..
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 78999997753
No 366
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=83.32 E-value=6.4 Score=40.78 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=35.5
Q ss_pred cCCCCCCeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 174 L~~~~g~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
..+++|++||=.+| +-|..++++|..++ ..|++.+.+..+++.+.. .+|.+.+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa~~v 208 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGFDEA 208 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCCCEE
Confidence 35788999987766 24445556666653 468999999888765532 3677543
No 367
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=83.26 E-value=16 Score=39.11 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.8
Q ss_pred CCeEeeccCCCchHHHHHH
Q 010971 179 KERVIDMAAAPGGKTTYIA 197 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA 197 (496)
.-.|+|+|||+|..|+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 4589999999999987543
No 368
>PRK07677 short chain dehydrogenase; Provisional
Probab=83.12 E-value=22 Score=34.42 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=51.0
Q ss_pred CeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~f 250 (496)
.+||-.| |.|+.+.+++..+... ..|++++.+..+++.+...+...+ .++.++..|..+..... ..+..
T Consensus 2 k~~lItG-~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITG-GSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 4566455 4666777777665433 488999999988888877776555 35667778876532110 11468
Q ss_pred CEEEECCCC
Q 010971 251 DRVLLDAPC 259 (496)
Q Consensus 251 D~VLlDaPC 259 (496)
|.|+..+.+
T Consensus 80 d~lI~~ag~ 88 (252)
T PRK07677 80 DALINNAAG 88 (252)
T ss_pred cEEEECCCC
Confidence 999886643
No 369
>PRK07454 short chain dehydrogenase; Provisional
Probab=83.03 E-value=19 Score=34.51 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+||-.| |+|+.+..++..+-..| .|++++.++.....+...+...+ .++.++..|..+.... + ..+.
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 44566665 57888888887664333 89999999988877777776554 3466777888764321 1 1145
Q ss_pred cCEEEECC
Q 010971 250 VDRVLLDA 257 (496)
Q Consensus 250 fD~VLlDa 257 (496)
.|.|+..+
T Consensus 84 id~lv~~a 91 (241)
T PRK07454 84 PDVLINNA 91 (241)
T ss_pred CCEEEECC
Confidence 89888743
No 370
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=82.85 E-value=5.7 Score=39.92 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=56.2
Q ss_pred cCCCCCCeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCCC
Q 010971 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~~ 248 (496)
..+++|++||=.++ +-|..++++|..++ ..|++.+.++.+.+.++ .+|+..+. ......+... ....
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~----~~Ga~~vi--~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLK----ELGFDAVF--NYKTVSLEEALKEAAPD 210 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HcCCCEEE--eCCCccHHHHHHHHCCC
Confidence 45778999986653 23334444555543 37899999988877664 36875432 2222222111 1124
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.+|.|| | |+|. ..+..+++++ +++|++|..
T Consensus 211 gvd~vl-d--~~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 240 (329)
T cd08294 211 GIDCYF-D--NVGG--------------------------EFSSTVLSHM----NDFGRVAVC 240 (329)
T ss_pred CcEEEE-E--CCCH--------------------------HHHHHHHHhh----ccCCEEEEE
Confidence 689887 3 3331 1256667776 999998754
No 371
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=82.84 E-value=0.74 Score=45.11 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=32.7
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~ 228 (496)
...++||+|||-|-.|.+++-.. -.|+|-++|..+.. +++..+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~----rL~kk~y 155 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRD----RLKKKNY 155 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHH----HHhhcCC
Confidence 44799999999999999887665 35888888865544 4455544
No 372
>PRK09242 tropinone reductase; Provisional
Probab=82.83 E-value=29 Score=33.61 Aligned_cols=128 Identities=12% Similarity=0.019 Sum_probs=72.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g-~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|.+||-.|+ .|+.+..++..+.. ...|+.++.+...+..+..++.... -.++.++..|....... + ..
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3567776665 56777777765543 3489999999988888877776551 12466777887653211 0 12
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
+.+|.|+..+ |.+.. .| ....+.+++.... .-...++.+++..+.. .++|.||+.++..
T Consensus 87 g~id~li~~a---g~~~~--~~--~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~~ii~~sS~~ 149 (257)
T PRK09242 87 DGLHILVNNA---GGNIR--KA--AIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQ--HASSAIVNIGSVS 149 (257)
T ss_pred CCCCEEEECC---CCCCC--CC--hhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh--cCCceEEEECccc
Confidence 5789998754 33211 11 1123344433222 1223345555544411 3468888877653
No 373
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.59 E-value=27 Score=34.64 Aligned_cols=79 Identities=15% Similarity=0.039 Sum_probs=45.2
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.++|=.|++. +|.+..++..+... ..|+.++.+. ++....+.+...+ ..+.++..|..+..... ..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQL-GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhcc-CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 366788888887 48888777766433 4677777663 3332222332221 23445667876532110 12
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.++..|-
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 57899998763
No 374
>PRK06172 short chain dehydrogenase; Provisional
Probab=82.58 E-value=28 Score=33.66 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=53.0
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.+.+||-.|| +|+.+..++..+.. ...|+.++.+...+..+...+...+. ++.++..|..+.... + ..+
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3567776664 67777777765543 34899999999988888888777653 467777887653211 0 114
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.|+..+
T Consensus 84 ~id~li~~a 92 (253)
T PRK06172 84 RLDYAFNNA 92 (253)
T ss_pred CCCEEEECC
Confidence 689998754
No 375
>PRK06197 short chain dehydrogenase; Provisional
Probab=82.32 E-value=27 Score=35.13 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=52.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~-g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+|| +.-|+||.+.+++..+...| .|+.++.+..+...+...+... +-.++.++..|..+..... ..
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 466777 44567888998887654334 7888888888877666666543 2234677788887653211 12
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..|-
T Consensus 94 ~~iD~li~nAg 104 (306)
T PRK06197 94 PRIDLLINNAG 104 (306)
T ss_pred CCCCEEEECCc
Confidence 46899998663
No 376
>PRK07814 short chain dehydrogenase; Provisional
Probab=82.28 E-value=24 Score=34.53 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=53.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+.+||=.| |.|+.+.+++..+. ....|+.++.+...+..+...+...+. .+.+...|........ ..+
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467788777 47788888887553 334899999999888888777766553 4666777876643211 014
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.|+..|
T Consensus 87 ~id~vi~~A 95 (263)
T PRK07814 87 RLDIVVNNV 95 (263)
T ss_pred CCCEEEECC
Confidence 689888765
No 377
>PRK05993 short chain dehydrogenase; Provisional
Probab=82.15 E-value=17 Score=36.11 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=45.2
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~------~~~ 248 (496)
+.+||=.| |+||.+.+++..+... ..|++.+.++..+..+.. .+ +.++..|..+.... + ..+
T Consensus 4 ~k~vlItG-asggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~---~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITG-CSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG---LEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC---ceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677555 5788998888766433 489999999887765543 23 44566777653211 1 014
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
..|.|+..+
T Consensus 76 ~id~li~~A 84 (277)
T PRK05993 76 RLDALFNNG 84 (277)
T ss_pred CccEEEECC
Confidence 689998854
No 378
>PRK07478 short chain dehydrogenase; Provisional
Probab=82.09 E-value=25 Score=34.07 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=53.1
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+||=. .|+||.+.+++..+.. ...|+..+.++..+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 6 ~k~~lIt-Gas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 6 GKVAIIT-GASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCEEEEe-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 4566644 4567788887765543 34889999999998888888877664 466667787654211 0 1247
Q ss_pred cCEEEECCCC
Q 010971 250 VDRVLLDAPC 259 (496)
Q Consensus 250 fD~VLlDaPC 259 (496)
+|.|+..|..
T Consensus 84 id~li~~ag~ 93 (254)
T PRK07478 84 LDIAFNNAGT 93 (254)
T ss_pred CCEEEECCCC
Confidence 8999987643
No 379
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=82.06 E-value=8 Score=40.13 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=33.7
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
.+++|++||=.++ |+.+..++++....| .|+++|.+..+++.+ +.+|+..+
T Consensus 181 ~~~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~----~~~ga~~~ 233 (365)
T cd08277 181 KVEPGSTVAVFGL--GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA----KEFGATDF 233 (365)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH----HHcCCCcE
Confidence 4678999998754 555554443332223 699999999988766 34677543
No 380
>PRK05855 short chain dehydrogenase; Validated
Probab=82.05 E-value=20 Score=38.94 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=55.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
+.++|= -.|+||.+.+++..+...| .|+.++.+...++.+...+...|. ++.++..|..+..... ..+.
T Consensus 315 ~~~~lv-~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 315 GKLVVV-TGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCEEEE-ECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 456664 4457888888887664433 788999999998888888877665 5777788887643210 1256
Q ss_pred cCEEEECCCC
Q 010971 250 VDRVLLDAPC 259 (496)
Q Consensus 250 fD~VLlDaPC 259 (496)
+|.|+..|-.
T Consensus 393 id~lv~~Ag~ 402 (582)
T PRK05855 393 PDIVVNNAGI 402 (582)
T ss_pred CcEEEECCcc
Confidence 8999986643
No 381
>PRK12742 oxidoreductase; Provisional
Probab=82.03 E-value=19 Score=34.31 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=41.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeC-CHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-CCCCcC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVD 251 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-~~~~fD 251 (496)
.|.+||=. .|+|+.+.+++..+...| .|+.... +...++.+.. ..++ .++..|..+.... . ..+.+|
T Consensus 5 ~~k~vlIt-GasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~---~~~~---~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 5 TGKKVLVL-GGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQ---ETGA---TAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCEEEEE-CCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH---HhCC---eEEecCCCCHHHHHHHHHHhCCCc
Confidence 46677744 557888888888665444 6666544 4555554433 3343 3445666543211 1 124689
Q ss_pred EEEECC
Q 010971 252 RVLLDA 257 (496)
Q Consensus 252 ~VLlDa 257 (496)
.|+..+
T Consensus 78 ~li~~a 83 (237)
T PRK12742 78 ILVVNA 83 (237)
T ss_pred EEEECC
Confidence 988755
No 382
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.93 E-value=16 Score=32.69 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=51.8
Q ss_pred CCCchHHHHHHHHcCC--CcEEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCcCEEE
Q 010971 187 AAPGGKTTYIAALMKN--TGLIYANEMK--ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDRVL 254 (496)
Q Consensus 187 AgpGgKT~~lA~l~~~--~g~V~A~D~s--~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~fD~VL 254 (496)
.|.||.+..++..+-. ...|+.+..+ ..++..+...+...+ .++.++..|........ ..+.+|.|+
T Consensus 7 Ga~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li 85 (167)
T PF00106_consen 7 GASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGPLDILI 85 (167)
T ss_dssp TTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSSESEEE
T ss_pred CCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 3457777777765432 3477888888 888898888888877 77888889987642110 126799999
Q ss_pred ECCCCCCCC
Q 010971 255 LDAPCSGTG 263 (496)
Q Consensus 255 lDaPCSg~G 263 (496)
..+.....+
T Consensus 86 ~~ag~~~~~ 94 (167)
T PF00106_consen 86 NNAGIFSDG 94 (167)
T ss_dssp EECSCTTSB
T ss_pred ccccccccc
Confidence 865543333
No 383
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.90 E-value=33 Score=33.72 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=43.0
Q ss_pred CCCeEeeccCCCc-hHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPG-GKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpG-gKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|..+|=.|++.| |.+..++..+... ..|+..+.+....+.+.+.....|.. .++..|..+.... + ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~--~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCN--FVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCc--eEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567777777765 6777777655433 46777776643222333333333432 3456777663211 0 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+.+|.++..+
T Consensus 85 g~iDilVnna 94 (260)
T PRK06603 85 GSFDFLLHGM 94 (260)
T ss_pred CCccEEEEcc
Confidence 6799888754
No 384
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.50 E-value=2 Score=42.77 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=55.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCe-EEEE-ecCCCC-CccccC-CCCcC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVC-NYDGNE-LPKVLG-LNTVD 251 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~-g~~n-v~v~-~~D~~~-~~~~~~-~~~fD 251 (496)
.++-++||+|.|.-..--.|...+- .=..++-|+++..+..++.++..+ ++.+ +.+. ..|... |+.... .+.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 4577899998775543333333322 126889999999999999999887 6655 4443 233322 222222 47899
Q ss_pred EEEECCCCCC
Q 010971 252 RVLLDAPCSG 261 (496)
Q Consensus 252 ~VLlDaPCSg 261 (496)
.+||+||--+
T Consensus 156 ~tlCNPPFh~ 165 (292)
T COG3129 156 ATLCNPPFHD 165 (292)
T ss_pred eEecCCCcch
Confidence 9999999543
No 385
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=81.50 E-value=18 Score=36.51 Aligned_cols=146 Identities=21% Similarity=0.216 Sum_probs=88.8
Q ss_pred CCCcccccccEEE---eCCcchhH-----HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 010971 150 GATPEYMAGFYML---QSASSFLP-----VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTA 221 (496)
Q Consensus 150 ~~~~~~~~G~~~i---Qd~sS~l~-----v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~ 221 (496)
..|-+|..|..-+ |+.-..+. +..+++ |.. |+. -||+- ..++++++....+.++|++++-...|+.
T Consensus 55 ~ktgE~~~GI~RL~~a~~lpa~l~~yl~~i~~lN~--~~~-l~~--YpGSP-~lA~~llR~qDRl~l~ELHp~D~~~L~~ 128 (279)
T COG2961 55 EKTGEYEQGIARLWQAADLPAELEPYLDAVRQLNP--GGG-LRY--YPGSP-LLARQLLREQDRLVLTELHPSDAPLLRN 128 (279)
T ss_pred hhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC--CCC-ccc--CCCCH-HHHHHHcchhceeeeeecCccHHHHHHH
Confidence 3466777774333 33222222 223343 433 444 45543 2344566667799999999999999999
Q ss_pred HHHHcCCCeEEEEecCCCCCccc-c-CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhh
Q 010971 222 NLHRMGVTNTIVCNYDGNELPKV-L-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299 (496)
Q Consensus 222 nl~r~g~~nv~v~~~D~~~~~~~-~-~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~ 299 (496)
|+. +..++.+...|+..-... + +..+=-.||+|||.-- ..+...+. +-|..++...
T Consensus 129 ~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~---------------~~eY~rvv----~~l~~~~kRf- 186 (279)
T COG2961 129 NFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL---------------KDEYQRVV----EALAEAYKRF- 186 (279)
T ss_pred HhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc---------------ccHHHHHH----HHHHHHHHhh-
Confidence 998 677899999998532111 1 1234568999999421 12333332 2355566654
Q ss_pred hcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 010971 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 300 ~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~~ 331 (496)
++|+. |-|.|.-+-..++.|++..
T Consensus 187 ----~~g~y----aiWYPik~r~~~~~f~~~L 210 (279)
T COG2961 187 ----ATGTY----AIWYPIKDRRQIRRFLRAL 210 (279)
T ss_pred ----cCceE----EEEEeecchHHHHHHHHHH
Confidence 45654 3478888888999888763
No 386
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=81.47 E-value=7.9 Score=40.36 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=34.1
Q ss_pred cCCCCCCeEeeccCCCchHHHH---HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 174 LAPQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~---lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.++ |+.+.. +|..++ ...|+++|.++.|++.+ +++|...
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a----~~~Ga~~ 233 (368)
T TIGR02818 181 AKVEEGDTVAVFGL--GGIGLSVIQGARMAK-ASRIIAIDINPAKFELA----KKLGATD 233 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHH----HHhCCCe
Confidence 35678999998865 555544 444442 12699999999998766 4478754
No 387
>PRK06182 short chain dehydrogenase; Validated
Probab=81.19 E-value=14 Score=36.41 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=45.9
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+..|| +..|+|+.+.+++..+...| .|++++.+..+++.+.. . ++.++..|..+.... + ..+.
T Consensus 3 ~k~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVAL-VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 45666 44467888998888764434 89999999887765432 2 345666777654221 1 1247
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
+|.|+..+.
T Consensus 75 id~li~~ag 83 (273)
T PRK06182 75 IDVLVNNAG 83 (273)
T ss_pred CCEEEECCC
Confidence 899988653
No 388
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=81.18 E-value=30 Score=33.61 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=53.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+.+||=.| |.|+.+.+++..+...| .|+..+.+..++..+...+...+. .+.++..|..+..... ..+
T Consensus 10 ~~k~vlVtG-~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 367788777 55777777776554333 788889898888888777776654 4566678877643211 125
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.|+..+..
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 68999886543
No 389
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.18 E-value=20 Score=34.42 Aligned_cols=80 Identities=10% Similarity=0.121 Sum_probs=51.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC-----cccc-----C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-----PKVL-----G 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~-----~~~~-----~ 246 (496)
.|.+||-.| |.|+.+.+++..+.. ...|++++.++.++..+...+...+-..+.++..|.... .... .
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 456777676 577888888876543 348999999999988887777665543444455554321 1100 0
Q ss_pred C-CCcCEEEECCC
Q 010971 247 L-NTVDRVLLDAP 258 (496)
Q Consensus 247 ~-~~fD~VLlDaP 258 (496)
. +.+|.|+..+-
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 1 46799988653
No 390
>PRK05866 short chain dehydrogenase; Provisional
Probab=80.98 E-value=22 Score=35.80 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=51.8
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
|.+||=.| |+||.+.+++..+.. ...|++++.+..+++.+.+.+...+. .+.++..|..+.... + ..+.
T Consensus 40 ~k~vlItG-asggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTG-ASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45666444 568888888876533 34899999999998888887776654 355677787653211 1 1247
Q ss_pred cCEEEECC
Q 010971 250 VDRVLLDA 257 (496)
Q Consensus 250 fD~VLlDa 257 (496)
.|.|+..|
T Consensus 118 id~li~~A 125 (293)
T PRK05866 118 VDILINNA 125 (293)
T ss_pred CCEEEECC
Confidence 89999843
No 391
>PRK05717 oxidoreductase; Validated
Probab=80.94 E-value=20 Score=34.78 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=49.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-------c-CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------L-GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-------~-~~~ 248 (496)
.|.+||=.| |+|+.+.+++..+... ..|+.+|.++.+...+... .+ .++.++..|..+.... . ..+
T Consensus 9 ~~k~vlItG-~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 9 NGRVALVTG-AARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA---LG-ENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred CCCEEEEeC-CcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH---cC-CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 366777555 4588888888776433 4899999888776554333 33 2466778888764221 0 114
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.|+..+..
T Consensus 84 ~id~li~~ag~ 94 (255)
T PRK05717 84 RLDALVCNAAI 94 (255)
T ss_pred CCCEEEECCCc
Confidence 68999987654
No 392
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=80.81 E-value=9.2 Score=41.26 Aligned_cols=89 Identities=10% Similarity=0.087 Sum_probs=56.5
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
.+|.+|+=+|+|+=|..+.......+ ..|+.+|.++.|+..+. .+|+..+ . +.... ..+|+|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~----~~G~~~~---~-----~~e~v--~~aDVVI~- 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAA----MEGYEVM---T-----MEEAV--KEGDIFVT- 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHH----hcCCEEc---c-----HHHHH--cCCCEEEE-
Confidence 57999999999986665543333223 47888999999976554 4676322 1 11222 46899875
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHH-HHhhhhcCCCCcEEEEEe
Q 010971 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA-IDMVDANSKSGGYIVYST 312 (496)
Q Consensus 257 aPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A-~~~l~~~lkpGG~LVYST 312 (496)
|+|.. .++..+ +..+ ++||+|+...
T Consensus 264 --atG~~-------------------------~~i~~~~l~~m----k~GgilvnvG 289 (413)
T cd00401 264 --TTGNK-------------------------DIITGEHFEQM----KDGAIVCNIG 289 (413)
T ss_pred --CCCCH-------------------------HHHHHHHHhcC----CCCcEEEEeC
Confidence 55431 134444 5555 9999998765
No 393
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=80.53 E-value=5.3 Score=44.12 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=14.3
Q ss_pred EeeccCCCchHHHHHHHH
Q 010971 182 VIDMAAAPGGKTTYIAAL 199 (496)
Q Consensus 182 VLDmcAgpGgKT~~lA~l 199 (496)
.-||||||||++-++.-.
T Consensus 271 FaDvCAGPGGFSEYvLwR 288 (845)
T KOG3673|consen 271 FADVCAGPGGFSEYVLWR 288 (845)
T ss_pred HHhhhcCCCccchhhhhh
Confidence 458999999999876543
No 394
>PRK06914 short chain dehydrogenase; Provisional
Probab=80.40 E-value=40 Score=33.10 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=53.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecCCCCCcccc-------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL-------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~-nv~v~~~D~~~~~~~~-------~~~~ 249 (496)
+.+||-. .|+|+.+.+++..+...| .|++++.+...+..+...+...+.. ++.++..|..+..... ..+.
T Consensus 3 ~k~~lIt-Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVT-GASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEE-CCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 3455544 466777887776544334 8999999998888887777666653 5777788887643210 1146
Q ss_pred cCEEEECCCCCC
Q 010971 250 VDRVLLDAPCSG 261 (496)
Q Consensus 250 fD~VLlDaPCSg 261 (496)
+|.|+..+..+.
T Consensus 82 id~vv~~ag~~~ 93 (280)
T PRK06914 82 IDLLVNNAGYAN 93 (280)
T ss_pred eeEEEECCcccc
Confidence 799988764433
No 395
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=80.33 E-value=6 Score=40.19 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=46.7
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEecCCCCC-ccccCCCC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKVLGLNT 249 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~n-v~v~~~D~~~~-~~~~~~~~ 249 (496)
+-.+++|+.|| +.||.||.++.+.|+++-.| .+++.-.+.+..+.++ .+|+.. |.....|..+- .+.-...+
T Consensus 141 ~y~vkpGhtVl-vhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ak----enG~~h~I~y~~eD~v~~V~kiTngKG 215 (336)
T KOG1197|consen 141 AYNVKPGHTVL-VHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAK----ENGAEHPIDYSTEDYVDEVKKITNGKG 215 (336)
T ss_pred hcCCCCCCEEE-EEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHH----hcCCcceeeccchhHHHHHHhccCCCC
Confidence 34689999999 66777888888888875433 6667766766666554 456654 33333343221 11112356
Q ss_pred cCEEE
Q 010971 250 VDRVL 254 (496)
Q Consensus 250 fD~VL 254 (496)
+|.|+
T Consensus 216 Vd~vy 220 (336)
T KOG1197|consen 216 VDAVY 220 (336)
T ss_pred ceeee
Confidence 77764
No 396
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.15 E-value=41 Score=33.40 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=46.5
Q ss_pred CCCeEeeccCC-CchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAA-PGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAg-pGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|..+|=.|++ .+|.+..++..+-..| .|+.++.+....+.+.+....+| .+.++..|..+..... ..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG--AFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC--CceEEecCCCCHHHHHHHHHHHHHhc
Confidence 35678888886 4889998888764334 66666554322333433334444 2345667876532110 12
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+..|.++.+|-
T Consensus 87 g~iD~lv~nAG 97 (272)
T PRK08159 87 GKLDFVVHAIG 97 (272)
T ss_pred CCCcEEEECCc
Confidence 57899998763
No 397
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=80.04 E-value=8.4 Score=39.32 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=33.7
Q ss_pred cCCCCCCeEeeccCCCchHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 174 LAPQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~---~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
..+++|++||=.++ +|+.+. ++|..++ ..|++.+.+..+.+.+++. +|++.+
T Consensus 147 ~~~~~g~~VlI~Ga-~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~---lGa~~v 201 (338)
T cd08295 147 CKPKKGETVFVSAA-SGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNK---LGFDDA 201 (338)
T ss_pred cCCCCCCEEEEecC-ccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCcee
Confidence 35789999996654 344444 4555443 3688888888887666432 577543
No 398
>PRK06701 short chain dehydrogenase; Provisional
Probab=79.70 E-value=28 Score=34.97 Aligned_cols=124 Identities=15% Similarity=0.155 Sum_probs=66.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCH-HHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKA-SRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~-~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.|.+||-.| |.|+.+.+++..+. ....|+.++.+. ..+..+...++..|. ++.++..|..+.... + ..
T Consensus 45 ~~k~iLItG-asggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITG-GDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 466777666 46777877777554 334777887764 345555555555453 466777887653211 1 11
Q ss_pred CCcCEEEECCCCCCCCcccCCchhhccCCHHHH----HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 010971 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDI----QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i----~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTC 313 (496)
+.+|.|+..|- .+.... .+ ...+.+++ .....--..++..++..+ +++|.||+.+-
T Consensus 123 ~~iD~lI~~Ag---~~~~~~--~~-~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~----~~~g~iV~isS 182 (290)
T PRK06701 123 GRLDILVNNAA---FQYPQQ--SL-EDITAEQLDKTFKTNIYSYFHMTKAALPHL----KQGSAIINTGS 182 (290)
T ss_pred CCCCEEEECCc---ccCCCC--Cc-ccCCHHHHHHHHhhhhHHHHHHHHHHHHHH----hhCCeEEEEec
Confidence 46899988553 221110 00 11222222 222223344555666654 67788888664
No 399
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.65 E-value=12 Score=38.08 Aligned_cols=101 Identities=26% Similarity=0.391 Sum_probs=56.9
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCc-E-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-C----CCCCcccc
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTG-L-IYANEMKASRLKSLTANLHRMGVTNTIVCNY-D----GNELPKVL 245 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-~-V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~-D----~~~~~~~~ 245 (496)
...+++|++||-.++ |+.+..++++.+..| . |++.+.+..+...+.+ +|.+.+.-... + ...+....
T Consensus 157 ~~~~~~g~~vlI~g~--g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 157 RAGVRPGDTVLVFGA--GPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 345788999998643 555544444433333 3 8889888887765533 47655322111 1 11111222
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
....||+||- |+|.. ..+..+++.+ +++|++|..
T Consensus 231 ~~~~~d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 264 (343)
T cd05285 231 GGKGPDVVIE---CTGAE-------------------------SCIQTAIYAT----RPGGTVVLV 264 (343)
T ss_pred CCCCCCEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 2346998874 55431 1355666766 899998753
No 400
>PRK07060 short chain dehydrogenase; Provisional
Probab=79.62 E-value=23 Score=33.78 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=46.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc---cc-CCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VL-GLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~---~~-~~~~fD~ 252 (496)
.|.+|| +..|.|+.+.+++..+...| .|+.++.+...+..+... .++ .++..|..+... .+ ..+.+|.
T Consensus 8 ~~~~~l-ItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---~~~---~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 8 SGKSVL-VTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE---TGC---EPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred CCCEEE-EeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hCC---eEEEecCCCHHHHHHHHHHhCCCCE
Confidence 466777 45566788888877654334 899999988776554432 232 344556654321 11 1246899
Q ss_pred EEECCCCCC
Q 010971 253 VLLDAPCSG 261 (496)
Q Consensus 253 VLlDaPCSg 261 (496)
|+..+..+.
T Consensus 81 vi~~ag~~~ 89 (245)
T PRK07060 81 LVNCAGIAS 89 (245)
T ss_pred EEECCCCCC
Confidence 998775543
No 401
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=79.49 E-value=27 Score=35.80 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=46.8
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC---cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-CCCCcCEEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT---GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~---g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-~~~~fD~VL 254 (496)
|.+||=.| |+|+.+.+++..+-.. ..|+++|.+......+...+ .-.++.++..|.++..... ....+|.|+
T Consensus 4 ~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAPCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 56777555 5799999988865432 36888887765543333222 2245777888887753221 014589998
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
.-|-
T Consensus 80 h~Ag 83 (324)
T TIGR03589 80 HAAA 83 (324)
T ss_pred ECcc
Confidence 7543
No 402
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=79.48 E-value=16 Score=37.90 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=56.8
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC----ccccCCCC
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGLNT 249 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~----~~~~~~~~ 249 (496)
.+++|.+||-.++|+ |..++++|+.++ ...|++.|.++.++..+. .+|+..+ +..+...+ .... ...
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~----~~g~~~~--i~~~~~~~~~~v~~~~-~~~ 254 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAK----ELGATHV--INPKEEDLVAAIREIT-GGG 254 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCcEE--ecCCCcCHHHHHHHHh-CCC
Confidence 467889999885432 333344555543 236999999998876553 4676433 22222111 1111 256
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
||.||- |+|.+ ..+..+++.+ +++|++|..
T Consensus 255 ~d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 284 (365)
T cd08278 255 VDYALD---TTGVP-------------------------AVIEQAVDAL----APRGTLALV 284 (365)
T ss_pred CcEEEE---CCCCc-------------------------HHHHHHHHHh----ccCCEEEEe
Confidence 998874 55542 1356677776 889988753
No 403
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.41 E-value=42 Score=32.65 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=49.6
Q ss_pred eEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCCcC
Q 010971 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVD 251 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~fD 251 (496)
+||=.|+ .||.+..++..+. ....|+.++.++..+..+.+.+...+ ++.++..|..+.... + ..+.+|
T Consensus 2 ~vlItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTAS-SRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4565554 4677777776653 33588999999998888877776554 466777887653211 0 125789
Q ss_pred EEEECCC
Q 010971 252 RVLLDAP 258 (496)
Q Consensus 252 ~VLlDaP 258 (496)
.|+..+-
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 9988653
No 404
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=79.29 E-value=48 Score=32.36 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=52.4
Q ss_pred CCCeEeeccCCCchHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~-~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.+.+||-.|++ |+.+.+++..+ .....|+..+.+..++..+...+...|. .+.++..|..+..... ..+
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45567766554 56676666543 3345788889999999888888877654 4666778876542210 125
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.|+..+-.
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999986643
No 405
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=79.23 E-value=26 Score=33.64 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=48.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=.|+ .|+.+.+++..+-..| .|+.++.+. ...+.+.+..++. .+.++..|..+..... ..+
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGA-NTGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGR-RFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4667776665 5778888887665444 788888654 3445555665553 4667778877642211 124
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..+-
T Consensus 80 ~~d~li~~ag 89 (248)
T TIGR01832 80 HIDILVNNAG 89 (248)
T ss_pred CCCEEEECCC
Confidence 6899988654
No 406
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=78.89 E-value=15 Score=37.79 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=56.3
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecC-CC----CCccccCCCC
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYD-GN----ELPKVLGLNT 249 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D-~~----~~~~~~~~~~ 249 (496)
++|++||=.+ .|+.+..++++....| .|++++.+..+...+ +.+|+..+.....+ .. .+........
T Consensus 176 ~~g~~vlI~g--~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 176 GAGDTVVVQG--AGPLGLYAVAAAKLAGARRVIVIDGSPERLELA----REFGADATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCCeEEcCcccccHHHHHHHHHHhCCCC
Confidence 4788888774 3666655544433222 789999998887655 45787554322111 10 1111112246
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
||.||- |+|.+ ..+..+++.+ +++|+++..
T Consensus 250 ~d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 279 (361)
T cd08231 250 ADVVIE---ASGHP-------------------------AAVPEGLELL----RRGGTYVLV 279 (361)
T ss_pred CcEEEE---CCCCh-------------------------HHHHHHHHHh----ccCCEEEEE
Confidence 998874 55432 1356667776 899998753
No 407
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=78.65 E-value=12 Score=38.78 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=34.5
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.++ |+.+..++++....| .|+++|.++.+++.+ +.+|...
T Consensus 183 ~~~~~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~----~~~Ga~~ 235 (369)
T cd08301 183 AKVKKGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA----KKFGVTE 235 (369)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCce
Confidence 45678999988754 666655444433223 699999999988765 4578754
No 408
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.64 E-value=50 Score=31.63 Aligned_cols=124 Identities=14% Similarity=0.032 Sum_probs=66.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEE-EeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYA-NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A-~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
+.+||-.| |+|+.+.+++..+...| .|+. ...+...+......++..+. ++.++..|....... + ...
T Consensus 6 ~~~vlitG-asg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 6 DKVVVVTG-SGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGG-EGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCC-eeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 56777666 57788888887654333 4444 44455666655556666554 355666777653211 1 114
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHH----HHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ----KCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~----~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.+|.|+..+.+...+-+. ..+.+.+. ........++..++..+ +.+|.+|+.+...
T Consensus 84 ~~d~vi~~ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~----~~~~~iv~~sS~~ 143 (252)
T PRK06077 84 VADILVNNAGLGLFSPFL-------NVDDKLIDKHISTDFKSVIYCSQELAKEM----REGGAIVNIASVA 143 (252)
T ss_pred CCCEEEECCCCCCCCChh-------hCCHHHHHHHHhHhCHHHHHHHHHHHHHh----hcCcEEEEEcchh
Confidence 689999876543332211 11222211 11222334455555554 6678888876543
No 409
>PRK08589 short chain dehydrogenase; Validated
Probab=78.62 E-value=49 Score=32.65 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=50.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||=. .|+||.+..++..+- ....|++++.+ ..+..+.+.+...+. ++.++..|..+..... ..+
T Consensus 5 ~~k~vlIt-Gas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVIT-GASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEE-CCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 35566644 456777887776553 34589999998 777777777766553 4666677876542110 125
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
..|.++..|-
T Consensus 82 ~id~li~~Ag 91 (272)
T PRK08589 82 RVDVLFNNAG 91 (272)
T ss_pred CcCEEEECCC
Confidence 6899998764
No 410
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=78.49 E-value=2 Score=45.20 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=29.4
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~ 226 (496)
.+|||+|+|||.-...+-+..+.--.++-++.|+. +......+++.
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~n 160 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAEN 160 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhh
Confidence 35999999999766655555554445666677764 44444455443
No 411
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.46 E-value=19 Score=35.29 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=46.7
Q ss_pred CCCeEeeccCC-CchHHHHHHHHcCCC-cEEEEEeCCH--HHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------
Q 010971 178 EKERVIDMAAA-PGGKTTYIAALMKNT-GLIYANEMKA--SRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------- 245 (496)
Q Consensus 178 ~g~~VLDmcAg-pGgKT~~lA~l~~~~-g~V~A~D~s~--~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-------- 245 (496)
.|.+||-.|++ .+|.+..++..+... ..|+..+.+. ..++.+.. .++- .+.++..|..+.....
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLPE-PAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcCC-CCcEEeCCCCCHHHHHHHHHHHHH
Confidence 46788888885 688998888765433 4788877653 33444333 2332 3456667876542110
Q ss_pred CCCCcCEEEECC
Q 010971 246 GLNTVDRVLLDA 257 (496)
Q Consensus 246 ~~~~fD~VLlDa 257 (496)
..+.+|.++.+|
T Consensus 82 ~~g~iD~li~nA 93 (256)
T PRK07889 82 HVDGLDGVVHSI 93 (256)
T ss_pred HcCCCcEEEEcc
Confidence 126799998865
No 412
>PRK05875 short chain dehydrogenase; Provisional
Probab=78.45 E-value=52 Score=32.23 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=53.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCccc---c-----CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~~~---~-----~~ 247 (496)
.+.+||=.| |+|+.+.+++..+-..| .|++++.+...+..+...+...+. .++.++..|..+.... + ..
T Consensus 6 ~~k~vlItG-asg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 6 QDRTYLVTG-GGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 366788666 55788888887664334 899999988887777666655432 4577777887654221 1 01
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.|+..+-
T Consensus 85 ~~~d~li~~ag 95 (276)
T PRK05875 85 GRLHGVVHCAG 95 (276)
T ss_pred CCCCEEEECCC
Confidence 46899998664
No 413
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.35 E-value=38 Score=33.31 Aligned_cols=78 Identities=13% Similarity=0.067 Sum_probs=43.7
Q ss_pred CCCeEeeccC-CCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAA-APGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcA-gpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.|+ |++|.+..++..+-..| .|+.++......+.+.+....++. ..++..|..+..... ..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGS--DLVFPCDVASDEQIDALFASLGQHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCC--cceeeccCCCHHHHHHHHHHHHHHh
Confidence 4678888887 57888888887664333 666665432212222222333332 234567776542110 12
Q ss_pred CCcCEEEECC
Q 010971 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~fD~VLlDa 257 (496)
+.+|.++..|
T Consensus 83 g~iD~lvnnA 92 (260)
T PRK06997 83 DGLDGLVHSI 92 (260)
T ss_pred CCCcEEEEcc
Confidence 6799998876
No 414
>PRK12743 oxidoreductase; Provisional
Probab=78.28 E-value=32 Score=33.47 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=49.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEE-eCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~-D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
+.+||=.| |+|+.+.+++..+-..| .|+.+ ..+...+..+...+...|. ++.++..|..+.... + ..+
T Consensus 2 ~k~vlItG-as~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTA-SDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGV-RAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34666666 46778888887664434 66655 4567777777777777664 466777787653211 0 124
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
..|.|+..+
T Consensus 80 ~id~li~~a 88 (256)
T PRK12743 80 RIDVLVNNA 88 (256)
T ss_pred CCCEEEECC
Confidence 689999854
No 415
>PRK05650 short chain dehydrogenase; Provisional
Probab=77.62 E-value=29 Score=34.03 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=50.2
Q ss_pred eEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCCcC
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVD 251 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~fD 251 (496)
+|| +..|+|+.+.+++..+...| .|+..+.+..+++.+...+...+. ++.++..|..+.... + ..+.+|
T Consensus 2 ~vl-VtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVM-ITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEE-EecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 455 34467888888887654444 888999999888888777776653 456667787654221 1 114689
Q ss_pred EEEECC
Q 010971 252 RVLLDA 257 (496)
Q Consensus 252 ~VLlDa 257 (496)
.|+..+
T Consensus 80 ~lI~~a 85 (270)
T PRK05650 80 VIVNNA 85 (270)
T ss_pred EEEECC
Confidence 998855
No 416
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=77.57 E-value=13 Score=39.38 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=59.2
Q ss_pred cCCCCCCeEeeccCCCchHHHH---HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCC----ccccC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLG 246 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~---lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~----~~~~~ 246 (496)
..+++|++||=.++ |+.+.. +|..++ ...|++.|.++.|++.++ ++|+. . +.......+ .....
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~----~~Ga~-~-v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 181 AGVGPGSTVYIAGA--GPVGLAAAASAQLLG-AAVVIVGDLNPARLAQAR----SFGCE-T-VDLSKDATLPEQIEQILG 251 (393)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHH----HcCCe-E-EecCCcccHHHHHHHHcC
Confidence 34678999887544 555544 444443 235677899988887764 46774 2 222111111 11122
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHH-HHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQK-QLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~-~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
...+|+||- |+|.-.-. ++ ... -..+. ..+..+++++ ++||++++.-
T Consensus 252 ~~g~Dvvid---~~G~~~~~-~~-~~~----------~~~~~~~~~~~~~~~~----~~~G~i~~~G 299 (393)
T TIGR02819 252 EPEVDCAVD---CVGFEARG-HG-HDG----------KKEAPATVLNSLMEVT----RVGGAIGIPG 299 (393)
T ss_pred CCCCcEEEE---CCCCcccc-cc-ccc----------cccchHHHHHHHHHHh----hCCCEEEEee
Confidence 246898864 66641000 00 000 00022 2477888887 9999998643
No 417
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=77.51 E-value=23 Score=35.54 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=57.1
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
...++|++||=.+ .|+.+..++++....| .|++.+.++++.+.++. +|+..+... + .. .....||.
T Consensus 151 ~~~~~g~~vlV~g--~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~~~~~--~--~~---~~~~~~d~ 217 (319)
T cd08242 151 VPITPGDKVAVLG--DGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVETVLPD--E--AE---SEGGGFDV 217 (319)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCcEEeCc--c--cc---ccCCCCCE
Confidence 3567889998774 4677666555544333 68999999988776654 677543222 1 11 12256998
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
|+- |+|.+ ..+..+++.+ +++|+++.
T Consensus 218 vid---~~g~~-------------------------~~~~~~~~~l----~~~g~~v~ 243 (319)
T cd08242 218 VVE---ATGSP-------------------------SGLELALRLV----RPRGTVVL 243 (319)
T ss_pred EEE---CCCCh-------------------------HHHHHHHHHh----hcCCEEEE
Confidence 874 55432 1245566665 89998875
No 418
>PRK07825 short chain dehydrogenase; Provisional
Probab=77.42 E-value=36 Score=33.35 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=47.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc-------c-CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------L-GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~-------~-~~~~ 249 (496)
|.+||=. -|+||.+.+++..+... ..|+..+.++..+..+...+. ++.++..|..+.... . ..+.
T Consensus 5 ~~~ilVt-GasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (273)
T PRK07825 5 GKVVAIT-GGARGIGLATARALAALGARVAIGDLDEALAKETAAELG-----LVVGGPLDVTDPASFAAFLDAVEADLGP 78 (273)
T ss_pred CCEEEEe-CCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----cceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4567744 45688888888755433 478888999888776655442 455667787654221 0 1256
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
.|.++..+-
T Consensus 79 id~li~~ag 87 (273)
T PRK07825 79 IDVLVNNAG 87 (273)
T ss_pred CCEEEECCC
Confidence 899888553
No 419
>PRK06179 short chain dehydrogenase; Provisional
Probab=77.18 E-value=20 Score=35.09 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=43.3
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+..||=.| |+|+.+.+++..+...| .|++.+.+...+.. ..++.++..|..+.... + ..+.
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAAP---------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 34566555 67888988887654434 78999988765432 12456667777654211 1 1256
Q ss_pred cCEEEECC
Q 010971 250 VDRVLLDA 257 (496)
Q Consensus 250 fD~VLlDa 257 (496)
+|.|+..+
T Consensus 74 ~d~li~~a 81 (270)
T PRK06179 74 IDVLVNNA 81 (270)
T ss_pred CCEEEECC
Confidence 89999855
No 420
>PRK07024 short chain dehydrogenase; Provisional
Probab=77.14 E-value=25 Score=34.22 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=49.6
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~f 250 (496)
.+||= ..|+|+.+.+++..+...| .|+.++.+..++..+...+...+ ++.++..|..+..... ..+.+
T Consensus 3 ~~vlI-tGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 3 LKVFI-TGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CEEEE-EcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 35554 4457888888887664434 89999999988877666554333 6777888887642210 12458
Q ss_pred CEEEECC
Q 010971 251 DRVLLDA 257 (496)
Q Consensus 251 D~VLlDa 257 (496)
|.|+..+
T Consensus 80 d~lv~~a 86 (257)
T PRK07024 80 DVVIANA 86 (257)
T ss_pred CEEEECC
Confidence 9998865
No 421
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=77.11 E-value=40 Score=34.73 Aligned_cols=81 Identities=14% Similarity=0.048 Sum_probs=50.8
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccC-CCCcCEEEEC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG-LNTVDRVLLD 256 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~-~~~fD~VLlD 256 (496)
+.+||=.| |+|..+.+++..+-..| .|++++.+......+...+.. -.++.++..|..+...... ...+|.|+--
T Consensus 10 ~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 86 (353)
T PLN02896 10 TGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE--GDRLRLFRADLQEEGSFDEAVKGCDGVFHV 86 (353)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc--CCeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence 56788555 57999999998765445 788888776554444333322 2357778888776422110 1358999887
Q ss_pred CCCCCC
Q 010971 257 APCSGT 262 (496)
Q Consensus 257 aPCSg~ 262 (496)
|..++.
T Consensus 87 A~~~~~ 92 (353)
T PLN02896 87 AASMEF 92 (353)
T ss_pred CccccC
Confidence 665443
No 422
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=76.90 E-value=50 Score=33.58 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=59.9
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc------C--C
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL------G--L 247 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~------~--~ 247 (496)
..+.++|=-| |++|.+..+|..+... ..|+-+--+.+||..+.+.++...--.+.++..|..+..... . .
T Consensus 4 ~~~~~~lITG-ASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTALITG-ASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCcEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 3466777554 5677888888766544 489999999999999999998765335677788876643221 1 1
Q ss_pred CCcCEEEECCCCCCCCcccC
Q 010971 248 NTVDRVLLDAPCSGTGVISK 267 (496)
Q Consensus 248 ~~fD~VLlDaPCSg~G~i~r 267 (496)
..+|+.+- |.|.|+...
T Consensus 83 ~~IdvLVN---NAG~g~~g~ 99 (265)
T COG0300 83 GPIDVLVN---NAGFGTFGP 99 (265)
T ss_pred CcccEEEE---CCCcCCccc
Confidence 36887776 557776653
No 423
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=76.88 E-value=38 Score=38.81 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=53.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHH-cCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r-~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
|.+|| +..|+|+.+.+++..+.. ...|+++|.+...+..+...+.. .+...+.++..|..+.... + ..+
T Consensus 414 gkvvL-VTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g 492 (676)
T TIGR02632 414 RRVAF-VTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG 492 (676)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 56677 445568888888876543 34899999999888777666543 3444566777888764221 1 124
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.|+..|-.
T Consensus 493 ~iDilV~nAG~ 503 (676)
T TIGR02632 493 GVDIVVNNAGI 503 (676)
T ss_pred CCcEEEECCCC
Confidence 78999886643
No 424
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=76.77 E-value=12 Score=38.06 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=41.1
Q ss_pred CCCCC--CeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cCC
Q 010971 175 APQEK--ERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGL 247 (496)
Q Consensus 175 ~~~~g--~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~~ 247 (496)
.+++| ++||=.++ |-|..++++|..++ ...|++.+.++.+.+.+.+. +|++.+. ..+...+... ...
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~vi--~~~~~~~~~~i~~~~~ 222 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDAAI--NYKTDNVAERLRELCP 222 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcEEE--ECCCCCHHHHHHHHCC
Confidence 35555 88887665 23444445555542 12699999998887666543 6776532 2221222111 112
Q ss_pred CCcCEEE
Q 010971 248 NTVDRVL 254 (496)
Q Consensus 248 ~~fD~VL 254 (496)
.++|.||
T Consensus 223 ~gvd~vi 229 (345)
T cd08293 223 EGVDVYF 229 (345)
T ss_pred CCceEEE
Confidence 4699887
No 425
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=76.56 E-value=72 Score=31.09 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=47.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEE-eCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~-D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~ 247 (496)
.|.+||=.| |+||.+.+++..+...| .|+.+ ..+.+.++.+...++...-..+.++..|..+..... ..
T Consensus 7 ~~k~vlItG-as~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK08416 7 KGKTLVISG-GTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF 85 (260)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 466777555 55777777777554333 56555 456777776666665421125677788887642110 12
Q ss_pred CCcCEEEECCC
Q 010971 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~fD~VLlDaP 258 (496)
+.+|.++.+|-
T Consensus 86 g~id~lv~nAg 96 (260)
T PRK08416 86 DRVDFFISNAI 96 (260)
T ss_pred CCccEEEECcc
Confidence 57899998774
No 426
>PLN02702 L-idonate 5-dehydrogenase
Probab=76.55 E-value=26 Score=36.16 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=56.3
Q ss_pred cCCCCCCeEeeccCCCchHH---HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc------
Q 010971 174 LAPQEKERVIDMAAAPGGKT---TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------ 244 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT---~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~------ 244 (496)
..+.+|++||=.+ .|+.+ +++|..++ ...|+++|.+..+... ++.+|++.+.........+...
T Consensus 177 ~~~~~g~~vlI~g--~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 177 ANIGPETNVLVMG--AGPIGLVTMLAARAFG-APRIVIVDVDDERLSV----AKQLGADEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHH----HHHhCCCEEEecCcccccHHHHHHHHhh
Confidence 4567888988884 35444 44444442 2358899999877764 3456776543322111111111
Q ss_pred cCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 245 ~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
.....+|.||- |+|.+ ..+..+++++ +++|++|..
T Consensus 250 ~~~~~~d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 284 (364)
T PLN02702 250 AMGGGIDVSFD---CVGFN-------------------------KTMSTALEAT----RAGGKVCLV 284 (364)
T ss_pred hcCCCCCEEEE---CCCCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 11246898864 55432 1256667776 899998753
No 427
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.49 E-value=4.6 Score=43.07 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=38.5
Q ss_pred hHHHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH
Q 010971 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl 223 (496)
.=..+|++.|+++||=+++| |.-.+.+ ++.+...|+|||+|+.-+..+.=.+
T Consensus 26 vD~~aL~i~~~d~vl~ItSa-G~N~L~y--L~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSA-GCNALDY--LLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHHHHhCCCCCCeEEEEccC-CchHHHH--HhcCCceEEEEeCCHHHHHHHHHHH
Confidence 44578889999999999877 4445544 3345579999999999887765443
No 428
>PLN02780 ketoreductase/ oxidoreductase
Probab=76.47 E-value=51 Score=33.83 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=41.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecCCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGN 239 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g-~~nv~v~~~D~~ 239 (496)
.|..||=.| |+||.+.++|..+...| .|+.++.++++++.+.+.+.... -..+.++..|..
T Consensus 52 ~g~~~lITG-As~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTG-PTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeC-CCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 366777666 56777888887654334 89999999999998888876542 224555555654
No 429
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=76.34 E-value=62 Score=30.58 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=50.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+||=.| |+|+.+.+++..+...| .|+.++.++.++..+...+...+.. +.++..|..+.... + ....
T Consensus 5 ~~~ilItG-asg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 5 GKTALVTG-ASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGE-ARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCc-eEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45777555 47889988887654333 6899999998888777777666543 55666777653211 1 0145
Q ss_pred cCEEEECC
Q 010971 250 VDRVLLDA 257 (496)
Q Consensus 250 fD~VLlDa 257 (496)
+|.|+.-+
T Consensus 83 id~vi~~a 90 (246)
T PRK05653 83 LDILVNNA 90 (246)
T ss_pred CCEEEECC
Confidence 79888754
No 430
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=76.27 E-value=30 Score=33.50 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=48.1
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
+.+||=. .|+|+.+.+++..+...| .|+.+|.+..++..+...+ + .++.++..|..+..... ..+.
T Consensus 6 ~~~vlIt-Gas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (257)
T PRK07067 6 GKVALLT-GAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G-PAAIAVSLDVTRQDSIDRIVAAAVERFGG 80 (257)
T ss_pred CCEEEEe-CCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C-CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4566644 467888888887664334 8999999988877665543 2 24666777876532210 1146
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
.|.|+..+.
T Consensus 81 id~li~~ag 89 (257)
T PRK07067 81 IDILFNNAA 89 (257)
T ss_pred CCEEEECCC
Confidence 898887543
No 431
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=76.14 E-value=2 Score=38.61 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=47.4
Q ss_pred EEEEecCCCCCccccCCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 231 v~v~~~D~~~~~~~~~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
..+..+|++..-..+. ..||.|++|+= .-+++|++ |+. +++....+++ +|||+++-
T Consensus 33 L~L~~gDa~~~l~~l~-~~~Da~ylDgF-----sP~~nPel---Ws~-----------e~~~~l~~~~----~~~~~l~T 88 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLD-ARFDAWYLDGF-----SPAKNPEL---WSE-----------ELFKKLARLS----KPGGTLAT 88 (124)
T ss_dssp EEEEES-HHHHHHHB--T-EEEEEE-SS------TTTSGGG---SSH-----------HHHHHHHHHE----EEEEEEEE
T ss_pred EEEEEcHHHHHHHhCc-ccCCEEEecCC-----CCcCCccc---CCH-----------HHHHHHHHHh----CCCcEEEE
Confidence 4566778765433222 68999999952 12578885 443 3556666665 99998875
Q ss_pred EeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 010971 311 STCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 311 STCSi~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
.||+ ..|...|...||.+...
T Consensus 89 ys~a-------~~Vr~~L~~aGF~v~~~ 109 (124)
T PF05430_consen 89 YSSA-------GAVRRALQQAGFEVEKV 109 (124)
T ss_dssp S--B-------HHHHHHHHHCTEEEEEE
T ss_pred eech-------HHHHHHHHHcCCEEEEc
Confidence 5554 35888999988887654
No 432
>PRK06180 short chain dehydrogenase; Provisional
Probab=76.10 E-value=41 Score=33.23 Aligned_cols=75 Identities=8% Similarity=0.055 Sum_probs=47.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
+..|| +.-|+|+.+.+++..+... ..|++++.++.++..+... .-.++.++..|..+..... ..+.
T Consensus 4 ~~~vl-VtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWL-ITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL----HPDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEE-EecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh----cCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 44566 4455778888888765433 4899999998877655432 2235666677876542211 1146
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
+|.|+..+.
T Consensus 79 ~d~vv~~ag 87 (277)
T PRK06180 79 IDVLVNNAG 87 (277)
T ss_pred CCEEEECCC
Confidence 899988554
No 433
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=76.01 E-value=21 Score=37.04 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=34.8
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
..+++|++||=.++ |+.++.++++.+..| .|++.|.++.+++.+. .+|.+.+
T Consensus 182 ~~~~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~----~lGa~~~ 235 (368)
T cd08300 182 AKVEPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKFELAK----KFGATDC 235 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCCEE
Confidence 45678999998864 555555444333223 6999999999987653 4787543
No 434
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=75.89 E-value=24 Score=34.64 Aligned_cols=80 Identities=10% Similarity=0.052 Sum_probs=46.2
Q ss_pred CCCeEeeccCC-CchHHHHHHHHcCCCc-EEEEEeCCH--HHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------
Q 010971 178 EKERVIDMAAA-PGGKTTYIAALMKNTG-LIYANEMKA--SRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------- 245 (496)
Q Consensus 178 ~g~~VLDmcAg-pGgKT~~lA~l~~~~g-~V~A~D~s~--~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-------- 245 (496)
.|.+||=.||+ ++|.+..++..+...| .|+..+.+. .|.......+...+ ..+.++..|..+.....
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL-NPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc-CcceEeecCcCCHHHHHHHHHHHHH
Confidence 46788888885 6899998887765444 565554332 23333333333322 23556677876642211
Q ss_pred CCCCcCEEEECCC
Q 010971 246 GLNTVDRVLLDAP 258 (496)
Q Consensus 246 ~~~~fD~VLlDaP 258 (496)
..+.+|.++..+-
T Consensus 84 ~~g~iD~lv~nag 96 (258)
T PRK07370 84 KWGKLDILVHCLA 96 (258)
T ss_pred HcCCCCEEEEccc
Confidence 1257999888653
No 435
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.44 E-value=52 Score=32.08 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=50.6
Q ss_pred CCCeEeeccCCC-chHHHHHHHHcCCCc-EEEEEeC-----------CHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc
Q 010971 178 EKERVIDMAAAP-GGKTTYIAALMKNTG-LIYANEM-----------KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (496)
Q Consensus 178 ~g~~VLDmcAgp-GgKT~~lA~l~~~~g-~V~A~D~-----------s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~ 244 (496)
.|.+||=.|+.. ||.+.+++..+...| .|+..+. +...+..+.+.+...|. .+.++..|..+....
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~i 83 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELDLTQNDAP 83 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHH
Confidence 577888888874 688888776654333 6666542 23344455666666665 466677887653211
Q ss_pred ---c-----CCCCcCEEEECCCCC
Q 010971 245 ---L-----GLNTVDRVLLDAPCS 260 (496)
Q Consensus 245 ---~-----~~~~fD~VLlDaPCS 260 (496)
+ ..+..|.|+..|-+.
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~ 107 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYS 107 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCC
Confidence 0 124689999987654
No 436
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=75.33 E-value=20 Score=37.23 Aligned_cols=103 Identities=24% Similarity=0.256 Sum_probs=57.6
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEE-EecCCCC-CccccCCCCcC
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIV-CNYDGNE-LPKVLGLNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v-~~~D~~~-~~~~~~~~~fD 251 (496)
..++|++||=.+ |+||.++.+.|+.+..| .+++.-.+.+..+ .++.+|.+.++. ...|... ..+......+|
T Consensus 139 ~l~~g~~VLV~g-aaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 139 GLKPGETVLVHG-AAGGVGSAAIQLAKALGATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCCCCCEEEEec-CCchHHHHHHHHHHHcCCcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCCCCce
Confidence 467899999665 44555544444444334 6667666665444 466778765432 2222111 11112224699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
.|+- +- | -..+..++..+ ++||++|+...+-
T Consensus 214 vv~D-~v--G--------------------------~~~~~~~l~~l----~~~G~lv~ig~~~ 244 (326)
T COG0604 214 VVLD-TV--G--------------------------GDTFAASLAAL----APGGRLVSIGALS 244 (326)
T ss_pred EEEE-CC--C--------------------------HHHHHHHHHHh----ccCCEEEEEecCC
Confidence 9974 11 1 12355566766 8999998876654
No 437
>PRK06101 short chain dehydrogenase; Provisional
Probab=75.28 E-value=36 Score=32.82 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=43.6
Q ss_pred ccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cC--CCCcCEEEECCC
Q 010971 185 MAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG--LNTVDRVLLDAP 258 (496)
Q Consensus 185 mcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~--~~~fD~VLlDaP 258 (496)
+..|+||.+.+++..+... ..|++++.++.+++.+... + .++.++..|..+.... .. ....|.++..+.
T Consensus 6 ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag 80 (240)
T PRK06101 6 ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG 80 (240)
T ss_pred EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence 5566789999888766543 4789999998887665432 1 2456667787664321 10 123577777653
No 438
>PRK12744 short chain dehydrogenase; Provisional
Probab=75.12 E-value=41 Score=32.66 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=66.0
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeC----CHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM----KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------- 245 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~----s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-------- 245 (496)
|.+||=.| |.|+.+.+++..+...| .|+.++. +...+..+.+.+...+. ++.++..|..+.....
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA-KAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC-cEEEEecCcCCHHHHHHHHHHHHH
Confidence 55677555 67788888887665444 5555543 33445555555555553 4667788886542211
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~----~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi 315 (496)
..+..|.|+..| |.....+ .+..+.++..... .--..++..++..+ +++|.+++.++|.
T Consensus 86 ~~~~id~li~~a-----g~~~~~~--~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~----~~~~~iv~~~ss~ 148 (257)
T PRK12744 86 AFGRPDIAINTV-----GKVLKKP--IVEISEAEYDEMFAVNSKSAFFFIKEAGRHL----NDNGKIVTLVTSL 148 (257)
T ss_pred hhCCCCEEEECC-----cccCCCC--cccCCHHHHHHHHhhhhhHHHHHHHHHHHhh----ccCCCEEEEecch
Confidence 124689888755 2222122 1223333333211 12233455555554 6778888765553
No 439
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=75.07 E-value=78 Score=30.52 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=53.1
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
.|.+||-.| |.|+.+..++..+. ....|+.++.+...+..+...++..|. ++.++..|..+..... ..+
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 467788666 56777877776553 335899999999888888887877664 3666777876532110 124
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.|+..+
T Consensus 88 ~id~vi~~a 96 (256)
T PRK06124 88 RLDILVNNV 96 (256)
T ss_pred CCCEEEECC
Confidence 689998865
No 440
>PRK08278 short chain dehydrogenase; Provisional
Probab=74.98 E-value=40 Score=33.35 Aligned_cols=126 Identities=10% Similarity=0.046 Sum_probs=67.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHH-------HHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKAS-------RLKSLTANLHRMGVTNTIVCNYDGNELPKV---L- 245 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~-------rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~- 245 (496)
.|.+|| +..|+|+.+.+++..+.. ...|++++.+.. .+..+...+...+. ++.++..|..+.... +
T Consensus 5 ~~k~vl-ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 5 SGKTLF-ITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCEEE-EECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHH
Confidence 355677 445578888888876543 347888887653 24444445554443 466777887664211 1
Q ss_pred ----CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHH----HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 246 ----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 246 ----~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~----l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
..+.+|.|+..+.....+.+ +..+.++... ...-...++..++..+.. ..+|.+|+.+..
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~-------~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~~~g~iv~iss~ 150 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGT-------EDTPMKRFDLMQQINVRGTFLVSQACLPHLKK--SENPHILTLSPP 150 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCc-------ccCCHHHHHHHHHHhchHHHHHHHHHHHHHHh--cCCCEEEEECCc
Confidence 11479999987754332221 1223333322 222234455555554411 235788776653
No 441
>PRK07775 short chain dehydrogenase; Provisional
Probab=74.98 E-value=65 Score=31.79 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=50.6
Q ss_pred CeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~f 250 (496)
..||=.| |.|+.+.+++..+-.. ..|++.+.+..++..+...+...+. ++.++..|..+..... ..+..
T Consensus 11 ~~vlVtG-a~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 88 (274)
T PRK07775 11 RPALVAG-ASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGG-EAVAFPLDVTDPDSVKSFVAQAEEALGEI 88 (274)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 3566444 5788899888755433 4788888888887777777766553 4667777877543211 01468
Q ss_pred CEEEECCC
Q 010971 251 DRVLLDAP 258 (496)
Q Consensus 251 D~VLlDaP 258 (496)
|.|+..+-
T Consensus 89 d~vi~~Ag 96 (274)
T PRK07775 89 EVLVSGAG 96 (274)
T ss_pred CEEEECCC
Confidence 99998663
No 442
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=74.91 E-value=16 Score=37.85 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=52.6
Q ss_pred CCCCeEeeccCCCchHHHH---HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 177 QEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~---lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
++|++||=.+ .|+.+.. +|..++ ..|++++.+..+...+ ++++|...+. ...+...+.... ..+|.|
T Consensus 179 ~~g~~vlV~G--~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~---~~~~Ga~~~i-~~~~~~~~~~~~--~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILG--LGGVGHMGVKIAKAMG--HHVTVISSSDKKREEA---LEHLGADDYL-VSSDAAEMQEAA--DSLDYI 248 (357)
T ss_pred CCCCeEEEEc--ccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHH---HHhcCCcEEe-cCCChHHHHHhc--CCCcEE
Confidence 6899998774 3555544 444443 3578888877665433 3457875332 112211121111 358888
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
+- |+|.+ ..+..+++++ ++||++|..
T Consensus 249 id---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 274 (357)
T PLN02514 249 ID---TVPVF-------------------------HPLEPYLSLL----KLDGKLILM 274 (357)
T ss_pred EE---CCCch-------------------------HHHHHHHHHh----ccCCEEEEE
Confidence 63 55431 1256677776 999998764
No 443
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=74.90 E-value=15 Score=38.33 Aligned_cols=96 Identities=13% Similarity=0.196 Sum_probs=52.6
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.++|++||=.++ |+.++.+.++.+.. ..|++++.+..+... .++++|++.+.. ..+...+.... +.+|+||
T Consensus 181 ~~~g~~VlV~G~--G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~---~~~~~Ga~~vi~-~~~~~~~~~~~--~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGL--GGLGHVAVKIGKAFGLKVTVISSSSNKEDE---AINRLGADSFLV-STDPEKMKAAI--GTMDYII 252 (360)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCcchhhh---HHHhCCCcEEEc-CCCHHHHHhhc--CCCCEEE
Confidence 468999988655 55554444333222 367888877655432 234578754321 11111122212 3589887
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 255 lDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
| |+|.. ..+..+++++ ++||++|..
T Consensus 253 -d--~~g~~-------------------------~~~~~~~~~l----~~~G~iv~v 277 (360)
T PLN02586 253 -D--TVSAV-------------------------HALGPLLGLL----KVNGKLITL 277 (360)
T ss_pred -E--CCCCH-------------------------HHHHHHHHHh----cCCcEEEEe
Confidence 3 45421 1255677776 999998854
No 444
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.80 E-value=5.1 Score=37.99 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=44.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEecCCCCCccccCCCCcCEEE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM---GVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~---g~~nv~v~~~D~~~~~~~~~~~~fD~VL 254 (496)
.|.+||++|+|--+.+..|.+...+...|.--|-+...++.++.-..++ +.+.+.++..+-..-........||.||
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 3678999998755444433333334467888899988887777666554 2233322222211100111225899998
Q ss_pred E
Q 010971 255 L 255 (496)
Q Consensus 255 l 255 (496)
+
T Consensus 109 a 109 (201)
T KOG3201|consen 109 A 109 (201)
T ss_pred e
Confidence 7
No 445
>PRK06125 short chain dehydrogenase; Provisional
Probab=74.74 E-value=67 Score=31.17 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=51.6
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-CCCCcCE
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-~~~~fD~ 252 (496)
.|.+||=.| |+|+.+..++..+.. ...|++++.++.+++.+...+....-.++.+...|..+.... . ..+..|.
T Consensus 6 ~~k~vlItG-~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITG-ASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 356666666 567788877765543 348999999999888887777654333566677777653211 0 1257898
Q ss_pred EEECC
Q 010971 253 VLLDA 257 (496)
Q Consensus 253 VLlDa 257 (496)
++..+
T Consensus 85 lv~~a 89 (259)
T PRK06125 85 LVNNA 89 (259)
T ss_pred EEECC
Confidence 88744
No 446
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=74.64 E-value=8.3 Score=38.73 Aligned_cols=145 Identities=23% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCCcccccccEEEeCC---cchhH-----HHhcCCCCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 010971 150 GATPEYMAGFYMLQSA---SSFLP-----VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTA 221 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~---sS~l~-----v~~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~ 221 (496)
..+.||..|..-+-.. ...+. +..+++..+ +..-||+=.+ ++.+++....++++|+++.-.+.|+.
T Consensus 24 ~ktgE~~~GI~rl~~~~~~p~~l~~yl~~v~~~n~~~~-----l~~YPGSP~i-a~~llR~qDrl~l~ELHp~d~~~L~~ 97 (245)
T PF04378_consen 24 QKTGEWQDGIGRLWAAQDLPPALQPYLDAVRALNPDGE-----LRFYPGSPAI-AARLLREQDRLVLFELHPQDFEALKK 97 (245)
T ss_dssp ----GGGGTHHHHHTGGGS-GGGHHHHHHHHHHSSSSS-------EEE-HHHH-HHHHS-TTSEEEEE--SHHHHHHHTT
T ss_pred hcchHHHHHHHHHHhCCcchHHHHHHHHHHHHhccCCC-----cCcCCCCHHH-HHHhCCccceEEEEecCchHHHHHHH
Confidence 4677888886444222 11111 122333222 5567887654 45667777899999999999999999
Q ss_pred HHHHcCCCeEEEEecCCCCCc-ccc-CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhh
Q 010971 222 NLHRMGVTNTIVCNYDGNELP-KVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299 (496)
Q Consensus 222 nl~r~g~~nv~v~~~D~~~~~-~~~-~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~ 299 (496)
|+.+ -..|.+.+.|+.... ..+ +..+=-+||+|||+- ...+...+. ..|..|++..
T Consensus 98 ~~~~--~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE---------------~~~dy~~v~----~~l~~a~kR~- 155 (245)
T PF04378_consen 98 NFRR--DRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYE---------------QKDDYQRVV----DALAKALKRW- 155 (245)
T ss_dssp S--T--TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--------------------STTHHHHHH----HHHHHHHHH--
T ss_pred Hhcc--CCccEEEeCchhhhhhhhCCCCCCCeEEEECCCCC---------------CchHHHHHH----HHHHHHHHhc-
Confidence 9875 357899999985421 111 113456899999942 122333333 3466777775
Q ss_pred hcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 300 ~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
+.|+++. |.|--+..-++.+++.
T Consensus 156 ----~~G~~~i----WYPi~~~~~~~~~~~~ 178 (245)
T PF04378_consen 156 ----PTGVYAI----WYPIKDRERVDRFLRA 178 (245)
T ss_dssp ----TTSEEEE----EEEESSHHHHHHHHHH
T ss_pred ----CCcEEEE----EeecccHHHHHHHHHH
Confidence 4564433 4555566666666654
No 447
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=74.62 E-value=31 Score=34.71 Aligned_cols=98 Identities=20% Similarity=0.276 Sum_probs=56.7
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc--cccCCC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP--KVLGLN 248 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~--~~~~~~ 248 (496)
...+++|++||..++ |+.+..++++....| .|++.+.++.+...+ .++|+. .++..+...+. ......
T Consensus 154 ~~~~~~g~~vlI~g~--g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~----~~~g~~--~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 154 LLGIKPGDSVLVFGA--GPIGLLLAQLLKLNGASRVTVAEPNEEKLELA----KKLGAT--ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH----HHhCCe--EEecCCCCCHHHHHHhcCC
Confidence 345678999999853 555554444443333 388899998877665 345665 23333222211 111235
Q ss_pred CcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 249 ~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
.+|.||- |+|.+ ..+..+++.+ +++|+++.
T Consensus 226 ~vd~v~~---~~~~~-------------------------~~~~~~~~~l----~~~G~~v~ 255 (334)
T cd08234 226 GFDVVIE---ATGVP-------------------------KTLEQAIEYA----RRGGTVLV 255 (334)
T ss_pred CCcEEEE---CCCCh-------------------------HHHHHHHHHH----hcCCEEEE
Confidence 6999984 54432 2355666766 89998754
No 448
>PRK06128 oxidoreductase; Provisional
Probab=74.57 E-value=45 Score=33.52 Aligned_cols=123 Identities=16% Similarity=0.113 Sum_probs=66.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----C
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMK--ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----G 246 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s--~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~ 246 (496)
.|.+||=.| |.|+.+.+++..+...| .|+....+ ......+...+...|. .+.++..|..+.... + .
T Consensus 54 ~~k~vlITG-as~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITG-ADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEec-CCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHHHH
Confidence 466777666 56788888887664334 56655543 3345555566666554 355677887653211 0 1
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l----~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.+..|.|+..|--.. ... + ....+.++.... ..-...++..++..+ +.+|.||+.+
T Consensus 132 ~g~iD~lV~nAg~~~---~~~-~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~----~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQT---AVK-D--IADITTEQFDATFKTNVYAMFWLCKAAIPHL----PPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccC---CCC-C--hhhCCHHHHHHHHHHHhHHHHHHHHHHHHhc----CcCCEEEEEC
Confidence 246899998763211 100 0 111233333222 222334556666554 7788888753
No 449
>PRK08265 short chain dehydrogenase; Provisional
Probab=74.24 E-value=57 Score=31.90 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=47.3
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
+.+||=.| |+|+.+.+++..+... ..|+..|.+...+..+...+ + ..+.++..|..+.... + ..+.
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 55666555 5677888887765433 48899999887666554433 3 2466777887764211 0 1246
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
.|.|+..+-
T Consensus 81 id~lv~~ag 89 (261)
T PRK08265 81 VDILVNLAC 89 (261)
T ss_pred CCEEEECCC
Confidence 899988653
No 450
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=74.10 E-value=79 Score=30.15 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=53.2
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
+..||-.| |+|+.+.+++..+-..| .|+.++.+......+...+...+. ++.++..|........ ..+.
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG-NAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 55677666 46788888877654444 899999999888888777766543 4667778876532111 0146
Q ss_pred cCEEEECCCC
Q 010971 250 VDRVLLDAPC 259 (496)
Q Consensus 250 fD~VLlDaPC 259 (496)
.|.|+..+..
T Consensus 81 ~d~vi~~ag~ 90 (250)
T TIGR03206 81 VDVLVNNAGW 90 (250)
T ss_pred CCEEEECCCC
Confidence 8999886644
No 451
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=74.06 E-value=44 Score=33.72 Aligned_cols=76 Identities=18% Similarity=0.102 Sum_probs=46.2
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEecCCCCCc---cccCCCCcCEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELP---KVLGLNTVDRV 253 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~-~nv~v~~~D~~~~~---~~~~~~~fD~V 253 (496)
|.+||-.| |+|+.+.+++..+-..| .|++...+..............+. .++.++..|..+.. ..+ ..+|.|
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~v 81 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI--DGCETV 81 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH--cCCCEE
Confidence 56777555 68999999887664434 677776665544333222222232 35777788887653 222 358998
Q ss_pred EECC
Q 010971 254 LLDA 257 (496)
Q Consensus 254 LlDa 257 (496)
+.-|
T Consensus 82 ih~A 85 (325)
T PLN02989 82 FHTA 85 (325)
T ss_pred EEeC
Confidence 8855
No 452
>PRK06482 short chain dehydrogenase; Provisional
Probab=73.71 E-value=33 Score=33.68 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=47.9
Q ss_pred eEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCCcC
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVD 251 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~fD 251 (496)
+|| +.-|+|+.+.+++..+... ..|++.+.++.++..+.... + .++.++..|..+.... + ..+..|
T Consensus 4 ~vl-VtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (276)
T PRK06482 4 TWF-ITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---G-DRLWVLQLDVTDSAAVRAVVDRAFAALGRID 78 (276)
T ss_pred EEE-EecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c-CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 455 4556789999988766443 48899999988777665443 2 2466777887764211 0 124689
Q ss_pred EEEECCCC
Q 010971 252 RVLLDAPC 259 (496)
Q Consensus 252 ~VLlDaPC 259 (496)
.|+..+-.
T Consensus 79 ~vi~~ag~ 86 (276)
T PRK06482 79 VVVSNAGY 86 (276)
T ss_pred EEEECCCC
Confidence 99985543
No 453
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=73.62 E-value=20 Score=36.30 Aligned_cols=86 Identities=15% Similarity=0.068 Sum_probs=51.2
Q ss_pred CCCCeEeeccCCCchHHHH---HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 177 QEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~---lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
.+|++||=+++ |+.++. +|..++ ...|+++|.++.|++.+.. .+ +++.+ .. ....||+|
T Consensus 143 ~~~~~vlV~G~--G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~----~~-----~i~~~--~~----~~~g~Dvv 204 (308)
T TIGR01202 143 VKVLPDLIVGH--GTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATG----YE-----VLDPE--KD----PRRDYRAI 204 (308)
T ss_pred cCCCcEEEECC--CHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhh----cc-----ccChh--hc----cCCCCCEE
Confidence 45788887754 455544 444443 2357788999988776543 11 11111 10 12469988
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
+- |+|.. ..+..+++++ ++||++++..
T Consensus 205 id---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 231 (308)
T TIGR01202 205 YD---ASGDP-------------------------SLIDTLVRRL----AKGGEIVLAG 231 (308)
T ss_pred EE---CCCCH-------------------------HHHHHHHHhh----hcCcEEEEEe
Confidence 74 55531 1356777876 9999998654
No 454
>PRK06057 short chain dehydrogenase; Provisional
Probab=73.56 E-value=37 Score=32.91 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=45.8
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||-.|| +|+.+.+++..+.. ...|++++.+...+..+...+ +. .++..|..+.... + ..+
T Consensus 6 ~~~~vlItGa-sggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~---~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (255)
T PRK06057 6 AGRVAVITGG-GSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV---GG---LFVPTDVTDEDAVNALFDTAAETYG 78 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc---CC---cEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 4678887776 57888888877643 348899999887766555443 22 3445565543211 1 114
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.|+..+
T Consensus 79 ~id~vi~~a 87 (255)
T PRK06057 79 SVDIAFNNA 87 (255)
T ss_pred CCCEEEECC
Confidence 689998865
No 455
>PRK08303 short chain dehydrogenase; Provisional
Probab=73.52 E-value=88 Score=31.81 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=49.5
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCC----------HHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMK----------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL- 245 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s----------~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~- 245 (496)
.|.+||-.|+ ++|.+..++..+-.. ..|+.++.+ +.++..+.+.+...|. .+.++..|..+.....
T Consensus 7 ~~k~~lITGg-s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGA-TRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGG-RGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHH
Confidence 3567776664 466788877766433 478888776 3566666666766654 3556777877642111
Q ss_pred -------CCCCcCEEEECC
Q 010971 246 -------GLNTVDRVLLDA 257 (496)
Q Consensus 246 -------~~~~fD~VLlDa 257 (496)
..+..|.++.++
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 125789988876
No 456
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=73.26 E-value=31 Score=36.76 Aligned_cols=117 Identities=13% Similarity=0.210 Sum_probs=60.7
Q ss_pred CCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHH------------HHc-CCCeEEEEecCCCCCccccCCCCcCEE
Q 010971 188 APGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANL------------HRM-GVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 188 gpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl------------~r~-g~~nv~v~~~D~~~~~~~~~~~~fD~V 253 (496)
|.|..++.+|..+...| .|+++|.++.+++.+.... .+. ...++.+. .| +.... ...|+|
T Consensus 7 GlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~---~~~~~--~~advv 80 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TD---YEDAI--RDADVI 80 (411)
T ss_pred CCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CC---HHHHH--hhCCEE
Confidence 44444455555443333 8999999999998776421 110 01112222 12 11112 468999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 254 LlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
++-.|..-.. ...|+. .. +..+++.+.+.+++|-.+|. +.|+.|...+.+...++++
T Consensus 81 ii~vpt~~~~--~~~~d~------~~-----------v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 81 IICVPTPLKE--DGSPDL------SY-----------VESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILER 137 (411)
T ss_pred EEEeCCCCCC--CCCcCh------HH-----------HHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHh
Confidence 9966643210 111111 11 12222222223477666665 4478888888888877765
No 457
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=73.24 E-value=18 Score=36.71 Aligned_cols=97 Identities=11% Similarity=0.146 Sum_probs=55.9
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc-ccCCCCcC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~-~~~~~~fD 251 (496)
+.+.+|++||=.++ |+.+..+.++....| .|++.+.+..+++.+ ..+|++.+ ++..-..+.. ......+|
T Consensus 159 ~~~~~~~~vlV~g~--g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~----~~~g~~~~--i~~~~~~~~~~~~~~~~~d 230 (333)
T cd08296 159 SGAKPGDLVAVQGI--GGLGHLAVQYAAKMGFRTVAISRGSDKADLA----RKLGAHHY--IDTSKEDVAEALQELGGAK 230 (333)
T ss_pred cCCCCCCEEEEECC--cHHHHHHHHHHHHCCCeEEEEeCChHHHHHH----HHcCCcEE--ecCCCccHHHHHHhcCCCC
Confidence 45678899988763 555554444333223 689999998887665 34676433 2222112211 11114589
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 252 ~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
.||- |+|.+ ..+..+++.+ +++|++|.
T Consensus 231 ~vi~---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~ 257 (333)
T cd08296 231 LILA---TAPNA-------------------------KAISALVGGL----APRGKLLI 257 (333)
T ss_pred EEEE---CCCch-------------------------HHHHHHHHHc----ccCCEEEE
Confidence 8873 54432 1356677776 89998875
No 458
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=73.09 E-value=32 Score=33.61 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=30.3
Q ss_pred hcCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 010971 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLT 220 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~ 220 (496)
...+.+|++||=.++|+ |..+.++|..++. ..|++.+.+..++..+.
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAE 139 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHH
Confidence 34567899998885433 3344455555542 24999999998876433
No 459
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=73.09 E-value=37 Score=32.41 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=43.0
Q ss_pred CCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc---ccCCCCcCE
Q 010971 177 QEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLNTVDR 252 (496)
Q Consensus 177 ~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~---~~~~~~fD~ 252 (496)
.+|++||..++|+ |..+.+++..++ ..|++.+.++.+.+.+. .+|...+ +......+.. ......||.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~----~~g~~~~--~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAK----ELGADHV--IDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH----HhCCcee--ccCCcCCHHHHHHHhcCCCCCE
Confidence 7899999998875 444555555543 58999999988877653 3454432 2221111111 112357999
Q ss_pred EEE
Q 010971 253 VLL 255 (496)
Q Consensus 253 VLl 255 (496)
|+.
T Consensus 205 vi~ 207 (271)
T cd05188 205 VID 207 (271)
T ss_pred EEE
Confidence 985
No 460
>PRK06500 short chain dehydrogenase; Provisional
Probab=73.08 E-value=46 Score=31.78 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=45.8
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
|.+||= ..|.|+.+.++++.+...| .|++++.+...+..+.+. +|. ++.++..|..+..... ..+.
T Consensus 6 ~k~vlI-tGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~---~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (249)
T PRK06500 6 GKTALI-TGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAE---LGE-SALVIRADAGDVAAQKALAQALAEAFGR 80 (249)
T ss_pred CCEEEE-eCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH---hCC-ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 455554 4556888888887654334 888899887766555433 343 3556666765532110 1146
Q ss_pred cCEEEECCC
Q 010971 250 VDRVLLDAP 258 (496)
Q Consensus 250 fD~VLlDaP 258 (496)
+|.|+..+.
T Consensus 81 id~vi~~ag 89 (249)
T PRK06500 81 LDAVFINAG 89 (249)
T ss_pred CCEEEECCC
Confidence 899988664
No 461
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.05 E-value=77 Score=30.21 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=51.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
+.+||=.| |+|+.+.+++..+-.. ..|++.+.++..+..+...+.. +. ++.+...|..+..... ..+.
T Consensus 5 ~~~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GG-RAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 45666554 5677888777655433 4899999999888877776654 32 4667778876543221 1246
Q ss_pred cCEEEECCCCC
Q 010971 250 VDRVLLDAPCS 260 (496)
Q Consensus 250 fD~VLlDaPCS 260 (496)
+|.|+..+.+.
T Consensus 82 ~d~vi~~ag~~ 92 (251)
T PRK07231 82 VDILVNNAGTT 92 (251)
T ss_pred CCEEEECCCCC
Confidence 89999876543
No 462
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.97 E-value=1.1e+02 Score=31.05 Aligned_cols=189 Identities=20% Similarity=0.201 Sum_probs=105.9
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHH------H---HHHHHHHHHcCCCeEEEEecCCCCCcc--cc
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASR------L---KSLTANLHRMGVTNTIVCNYDGNELPK--VL 245 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~r------l---~~l~~nl~r~g~~nv~v~~~D~~~~~~--~~ 245 (496)
...+||-++=|-=..+..|+...+ ..+.|+|-..+..- . ..-..-++++|+.- +...|+..+.. .+
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I--~h~Vdv~sl~~~~~~ 133 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTI--LHGVDVTSLKFHADL 133 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCce--EecccceeEEecccc
Confidence 456787777777777777777665 45666665544332 1 22234456777742 23334443321 33
Q ss_pred CCCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCcEEEEEeCCCCCcCCHHHH
Q 010971 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK-SGGYIVYSTCSIMVTENEAVI 324 (496)
Q Consensus 246 ~~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lk-pGG~LVYSTCSi~~eENE~vV 324 (496)
..++||.|+.+=|=+|.|.- .+.+. --+.....+-+..|..|-.++ + ..|.|+.+--+..| =|...+
T Consensus 134 ~~~~~d~IiFNFPH~G~g~~-~e~d~------~~i~~~qkL~rgFle~akemL----~~edGeI~itlk~t~P-~~~W~i 201 (282)
T KOG4174|consen 134 RLQRYDNIIFNFPHSGKGIK-FEQDR------NIIPLHQKLFRGFLESAKEML----KDEDGEIHITLKTTYP-FNPWNI 201 (282)
T ss_pred cccccceEEEcCCCCCCCcc-cccch------HHHHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeccCCC-Cchhhh
Confidence 45799999999999999975 22221 112234455567788888887 5 56776665333333 345777
Q ss_pred HHHHHhCCcEEeecC-Cc-CCCCCcccccccccCCCcCCeeEecCCCCCCCceEEEEEEecCCC
Q 010971 325 DYALKKRDVKLVPCG-LD-FGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386 (496)
Q Consensus 325 ~~~L~~~~~~lv~~~-~~-~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~~~~ 386 (496)
+.+.+..++.+.... .. +.-||+.. ++- ....|.+.++- +-.|-+++..++-..+.
T Consensus 202 k~Lak~~gl~L~~~skF~~~~~Pgy~~---Kr~--~gs~cd~p~l~-~~~d~~~y~f~~~~~~~ 259 (282)
T KOG4174|consen 202 KFLAKEFGLTLLEDSKFEKSNYPGYSN---KRG--DGSRCDSPLLV-HERDAIEYHFLKFVSPS 259 (282)
T ss_pred hHhhhhccccchhcccchhhcCCCccc---ccC--CCcccCCcccc-ccccceEEEEEeecccc
Confidence 776666677665431 11 13355532 221 11233434442 45677776666555444
No 463
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.72 E-value=33 Score=35.04 Aligned_cols=97 Identities=23% Similarity=0.289 Sum_probs=57.1
Q ss_pred cCCCCCCeEeeccCCCchHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccC
Q 010971 174 LAPQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLG 246 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~---~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~ 246 (496)
...++|++||=.++ |+.+. ++|..++ ...|++.|.++.++..++ .+|+..+ +..+...+. ....
T Consensus 162 ~~~~~g~~vlI~g~--g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~--v~~~~~~~~~~i~~~~~ 232 (351)
T cd08285 162 ANIKLGDTVAVFGI--GPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAK----EYGATDI--VDYKNGDVVEQILKLTG 232 (351)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCceE--ecCCCCCHHHHHHHHhC
Confidence 34678899988754 44443 4455443 346899999998876554 4776433 222211211 1112
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
...+|.||- |+|.. ..+..+++++ +++|++|..
T Consensus 233 ~~~~d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 265 (351)
T cd08285 233 GKGVDAVII---AGGGQ-------------------------DTFEQALKVL----KPGGTISNV 265 (351)
T ss_pred CCCCcEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEe
Confidence 246998874 55431 1356677776 899998753
No 464
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=72.70 E-value=18 Score=38.05 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=52.2
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEE
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLl 255 (496)
++|++||=.++ |+.++.++++.+.. ..|++++.+..+. .+.++.+|++.+.. ..+...+.... ..+|+||-
T Consensus 177 ~~g~~VlV~G~--G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~---~~~a~~lGa~~~i~-~~~~~~v~~~~--~~~D~vid 248 (375)
T PLN02178 177 ESGKRLGVNGL--GGLGHIAVKIGKAFGLRVTVISRSSEKE---REAIDRLGADSFLV-TTDSQKMKEAV--GTMDFIID 248 (375)
T ss_pred CCCCEEEEEcc--cHHHHHHHHHHHHcCCeEEEEeCChHHh---HHHHHhCCCcEEEc-CcCHHHHHHhh--CCCcEEEE
Confidence 57999987655 55554444333222 3688888775542 22335678754321 11111111111 35888863
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 256 DaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|+|.. ..+..+++++ ++||++|..
T Consensus 249 ---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~v 272 (375)
T PLN02178 249 ---TVSAE-------------------------HALLPLFSLL----KVSGKLVAL 272 (375)
T ss_pred ---CCCcH-------------------------HHHHHHHHhh----cCCCEEEEE
Confidence 55531 1256677776 999999864
No 465
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=72.44 E-value=38 Score=32.89 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=44.7
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~ 249 (496)
|..+|=.| |.|+.+..++..+... ..|+++|.+. ...+.+.+..++. .+.++..|..+.... + ..+.
T Consensus 10 ~k~~lItG-~~~gIG~a~a~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 10 GKVAVVTG-CDTGLGQGMALGLAEAGCDIVGINIVE--PTETIEQVTALGR-RFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEecCcc--hHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 55666555 5778888888866443 4788887654 2344445555543 456677787653111 1 1246
Q ss_pred cCEEEECC
Q 010971 250 VDRVLLDA 257 (496)
Q Consensus 250 fD~VLlDa 257 (496)
.|.|+..|
T Consensus 86 ~D~li~~A 93 (253)
T PRK08993 86 IDILVNNA 93 (253)
T ss_pred CCEEEECC
Confidence 89888754
No 466
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=72.31 E-value=32 Score=34.89 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=55.5
Q ss_pred hcCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCC-CCCccccCCCCc
Q 010971 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTV 250 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~-~~~~~~~~~~~f 250 (496)
.+.+.+|++||-.++|. |..+.++|..++ ...|++.+.+..+...+ ..+|...+....... ..+........|
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVA----RELGADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHH----HHcCCCEEecCccccHHHHHHHhCCCCC
Confidence 34567899999985432 333344555442 22488888887766654 345664332211111 111111222459
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|.||- |+|.+ ..+..+++.+ +++|+++..
T Consensus 229 d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 257 (343)
T cd08236 229 DLVIE---AAGSP-------------------------ATIEQALALA----RPGGKVVLV 257 (343)
T ss_pred CEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 99873 55432 1356667776 899987653
No 467
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=72.00 E-value=1.1e+02 Score=31.09 Aligned_cols=45 Identities=24% Similarity=0.113 Sum_probs=36.1
Q ss_pred CCCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 010971 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 177 ~~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~ 224 (496)
..+.+||=-|||-|..+..||.+ .-.+.|||.|--++-...-.+.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn 99 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILN 99 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHc
Confidence 34678999999999999999987 2489999999988765555443
No 468
>PRK05693 short chain dehydrogenase; Provisional
Probab=71.77 E-value=36 Score=33.47 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=43.0
Q ss_pred eEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCCcC
Q 010971 181 RVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVD 251 (496)
Q Consensus 181 ~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~fD 251 (496)
+|| +..|+|+.+.+++..+... ..|++++.+...+..+.. .+ +.++..|..+.... . ..+.+|
T Consensus 3 ~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~~---~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 74 (274)
T PRK05693 3 VVL-ITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA----AG---FTAVQLDVNDGAALARLAEELEAEHGGLD 74 (274)
T ss_pred EEE-EecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----CC---CeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 344 4456788888888766443 488999998877665432 23 34555666543211 0 125789
Q ss_pred EEEECCC
Q 010971 252 RVLLDAP 258 (496)
Q Consensus 252 ~VLlDaP 258 (496)
.|+..+-
T Consensus 75 ~vi~~ag 81 (274)
T PRK05693 75 VLINNAG 81 (274)
T ss_pred EEEECCC
Confidence 9988653
No 469
>PRK12746 short chain dehydrogenase; Provisional
Probab=71.68 E-value=68 Score=30.86 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=45.5
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEE-eCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-----------
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL----------- 245 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~-D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~----------- 245 (496)
+.+||=.| |+|+.+.+++..+-..| .|+.. ..+...+..+...+...+ ..+.++..|..+.....
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 6 GKVALVTG-ASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG-GKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 45677455 67899999988665445 44443 456665555554444333 23667778887643211
Q ss_pred ---CCCCcCEEEECC
Q 010971 246 ---GLNTVDRVLLDA 257 (496)
Q Consensus 246 ---~~~~fD~VLlDa 257 (496)
.....|.|+..|
T Consensus 84 ~~~~~~~id~vi~~a 98 (254)
T PRK12746 84 IRVGTSEIDILVNNA 98 (254)
T ss_pred cccCCCCccEEEECC
Confidence 013589998754
No 470
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=71.67 E-value=38 Score=34.07 Aligned_cols=92 Identities=18% Similarity=0.274 Sum_probs=53.2
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCE
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~ 252 (496)
..+++|++||=.+ .|+.+..++++.... ..|++.+.+..+.+.+ +.+|++.+. +.+. .+ ...+|.
T Consensus 163 ~~~~~~~~vlV~g--~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~----~~~g~~~~~--~~~~--~~----~~~vD~ 228 (329)
T cd08298 163 AGLKPGQRLGLYG--FGASAHLALQIARYQGAEVFAFTRSGEHQELA----RELGADWAG--DSDD--LP----PEPLDA 228 (329)
T ss_pred hCCCCCCEEEEEC--CcHHHHHHHHHHHHCCCeEEEEcCChHHHHHH----HHhCCcEEe--ccCc--cC----CCcccE
Confidence 4467888888764 455554443333222 4788888888766555 446764322 1111 11 246888
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 010971 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 253 VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYS 311 (496)
|+. |++.+ ..+..+++.+ ++||+++..
T Consensus 229 vi~---~~~~~-------------------------~~~~~~~~~l----~~~G~~v~~ 255 (329)
T cd08298 229 AII---FAPVG-------------------------ALVPAALRAV----KKGGRVVLA 255 (329)
T ss_pred EEE---cCCcH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 874 33322 1366677776 899998854
No 471
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=71.08 E-value=35 Score=34.54 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=31.2
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
+...+|++||-.++|. |..+.++|..++ ...|++.+.++.+...+ +.+|.+.
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~----~~~g~~~ 213 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVA----RAMGADE 213 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHH----HHcCCCE
Confidence 3434889999865432 334445555542 12689999888877643 3456644
No 472
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=70.72 E-value=41 Score=32.47 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=43.7
Q ss_pred cCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCCCcCEEEEC
Q 010971 186 AAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVDRVLLD 256 (496)
Q Consensus 186 cAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~~fD~VLlD 256 (496)
..|+|+.+.+++..+... ..|++++.++..+..+...+ +. ++.++..|..+.... + ..+..|.|+..
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ 81 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---GD-NLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN 81 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---cc-ceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 356788888888766433 48999999988877665543 32 466677787654211 1 11468988874
Q ss_pred C
Q 010971 257 A 257 (496)
Q Consensus 257 a 257 (496)
+
T Consensus 82 a 82 (248)
T PRK10538 82 A 82 (248)
T ss_pred C
Confidence 3
No 473
>PRK09072 short chain dehydrogenase; Provisional
Probab=70.65 E-value=62 Score=31.50 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=49.6
Q ss_pred CCeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc-------CCCCc
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------GLNTV 250 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~-------~~~~f 250 (496)
+.+||=.| |+|+.+..++..+.. ...|++++.+...+..+...+ ..+ .++.++..|..+..... ..+.+
T Consensus 5 ~~~vlItG-~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 5 DKRVLLTG-ASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 45666554 557778777765533 348999999998888776665 232 35667778877643210 12568
Q ss_pred CEEEECCC
Q 010971 251 DRVLLDAP 258 (496)
Q Consensus 251 D~VLlDaP 258 (496)
|.|+..+.
T Consensus 82 d~lv~~ag 89 (263)
T PRK09072 82 NVLINNAG 89 (263)
T ss_pred CEEEECCC
Confidence 99988653
No 474
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=70.63 E-value=76 Score=30.74 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=49.2
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
.|.+||=.|+ .|+.+..++..+-.. ..|+.++.+ ..++.+.+.+...+ .++.++..|..+.... + ..+
T Consensus 14 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGG-NTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG-RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4667776665 567777777766433 377777777 55666666666555 3466777887764221 1 124
Q ss_pred CcCEEEECCC
Q 010971 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~fD~VLlDaP 258 (496)
.+|.|+..+.
T Consensus 91 ~id~li~~ag 100 (258)
T PRK06935 91 KIDILVNNAG 100 (258)
T ss_pred CCCEEEECCC
Confidence 6899988553
No 475
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.91 E-value=25 Score=33.81 Aligned_cols=90 Identities=21% Similarity=0.352 Sum_probs=54.2
Q ss_pred ccccEEEeCCcchhHHHhcC-CCCCCeEeeccCCCchHHHHHHHHcC----CCcEEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 156 MAGFYMLQSASSFLPVMALA-PQEKERVIDMAAAPGGKTTYIAALMK----NTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 156 ~~G~~~iQd~sS~l~v~~L~-~~~g~~VLDmcAgpGgKT~~lA~l~~----~~g~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
+.-+|+.++-+..++...+. ...|.+|--+ ++|- +++-+..+ +.-.|+-++.++ ++..+|
T Consensus 50 lsqfwy~~eta~~La~e~v~~s~e~~rIacv-S~Ps---ly~y~k~re~~~~~~~v~lfEfDk--------RFe~yg--- 114 (217)
T KOG3350|consen 50 LSQFWYSDETARKLAAERVEASGEGSRIACV-SCPS---LYVYQKKREIEIPHDQVYLFEFDK--------RFELYG--- 114 (217)
T ss_pred hhhhhcCHHHHHHHHHHHHhhcccCceEEEE-eCch---HHhhhhhhhccCCceeEEEEEehh--------hHHhcc---
Confidence 34568888888888877664 4566665444 4443 22222222 235788888875 345555
Q ss_pred EEEEecCCC---CCccccCCCCcCEEEECCCCCC
Q 010971 231 TIVCNYDGN---ELPKVLGLNTVDRVLLDAPCSG 261 (496)
Q Consensus 231 v~v~~~D~~---~~~~~~~~~~fD~VLlDaPCSg 261 (496)
..++.+|-. ++|..+. ..||+|+.|||.=+
T Consensus 115 ~eFvfYDyN~p~dlp~~lk-~~fdiivaDPPfL~ 147 (217)
T KOG3350|consen 115 TEFVFYDYNCPLDLPDELK-AHFDIIVADPPFLS 147 (217)
T ss_pred ceeEEeccCCCCCCHHHHH-hcccEEEeCCcccc
Confidence 455666643 3454443 57999999999533
No 476
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.75 E-value=77 Score=30.67 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=47.4
Q ss_pred CCeEeeccCCC-chHHHHHHHHcCCCc-EEEEEeCC------------HHHHHHHHHHHHHcCCCeEEEEecCCCCCccc
Q 010971 179 KERVIDMAAAP-GGKTTYIAALMKNTG-LIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (496)
Q Consensus 179 g~~VLDmcAgp-GgKT~~lA~l~~~~g-~V~A~D~s------------~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~ 244 (496)
+..||=.||+. ||.+.+++..+...| .|++++.+ ..... +...+...+. ++.++..|..+....
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGV-RCEHMEIDLSQPYAP 82 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCC-eEEEEECCCCCHHHH
Confidence 56788788764 788888887664334 78888765 22222 4444544443 467778888764321
Q ss_pred c--------CCCCcCEEEECC
Q 010971 245 L--------GLNTVDRVLLDA 257 (496)
Q Consensus 245 ~--------~~~~fD~VLlDa 257 (496)
. ..+.+|.|+..+
T Consensus 83 ~~~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECC
Confidence 0 125689888754
No 477
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.32 E-value=58 Score=30.92 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=51.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCC-cEEEEE-eCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~-g~V~A~-D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~ 248 (496)
+.+||=.| |+|+.+.+++..+... ..|+.. +.+...+..+...+...+ .++.+...|..+.... + ..+
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG-GDAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 34566555 5688888887755332 377777 888888887777776643 3467778888764321 1 013
Q ss_pred CcCEEEECCCC
Q 010971 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~fD~VLlDaPC 259 (496)
.+|.|+..+..
T Consensus 83 ~id~vi~~ag~ 93 (247)
T PRK05565 83 KIDILVNNAGI 93 (247)
T ss_pred CCCEEEECCCc
Confidence 68999986643
No 478
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=69.27 E-value=24 Score=36.91 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=32.5
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
.+++|++||=.+ +|+.+..++++....| .|++.+.+..+... ++.+|++.+
T Consensus 200 ~~~~g~~VlV~g--~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~----~~~~g~~~~ 252 (384)
T cd08265 200 GFRPGAYVVVYG--AGPIGLAAIALAKAAGASKVIAFEISEERRNL----AKEMGADYV 252 (384)
T ss_pred CCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH----HHHcCCCEE
Confidence 467899988763 4666655444433333 68999998886543 345777543
No 479
>PLN02253 xanthoxin dehydrogenase
Probab=69.23 E-value=86 Score=30.79 Aligned_cols=76 Identities=13% Similarity=0.119 Sum_probs=48.3
Q ss_pred CCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~ 249 (496)
|.+||=.| |.|+.+.+++..+. ....|+.+|.+......+...+.. + .++.++..|..+..... ..+.
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-E-PNVCFFHCDVTVEDDVSRAVDFTVDKFGT 94 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-C-CceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 56777665 56788888887654 334888899887766555544421 1 34677778877642211 1146
Q ss_pred cCEEEECC
Q 010971 250 VDRVLLDA 257 (496)
Q Consensus 250 fD~VLlDa 257 (496)
.|.|+..|
T Consensus 95 id~li~~A 102 (280)
T PLN02253 95 LDIMVNNA 102 (280)
T ss_pred CCEEEECC
Confidence 89998865
No 480
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=69.07 E-value=67 Score=32.34 Aligned_cols=125 Identities=17% Similarity=0.226 Sum_probs=71.6
Q ss_pred CeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc--------cCCCCc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLNTV 250 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~--------~~~~~f 250 (496)
..|| +.-|+.|++..+|..+...| .|+...-..+||+.|...+.. ..+.+...|.++.... ...+.+
T Consensus 7 kv~l-ITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---~~~~~~~~DVtD~~~~~~~i~~~~~~~g~i 82 (246)
T COG4221 7 KVAL-ITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA---GAALALALDVTDRAAVEAAIEALPEEFGRI 82 (246)
T ss_pred cEEE-EecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---CceEEEeeccCCHHHHHHHHHHHHHhhCcc
Confidence 3444 44455567777777665444 899999999999999888765 4566677777664221 023789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc-C-CCCcEEEEEeCCCC
Q 010971 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN-S-KSGGYIVYSTCSIM 316 (496)
Q Consensus 251 D~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~-l-kpGG~LVYSTCSi~ 316 (496)
|+++.+| |+..-.|- .....++...+...-..=+.+..+.+-|. . +.+|.|| -++|+-
T Consensus 83 DiLvNNA-----Gl~~g~~~--~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~Ii-N~~SiA 142 (246)
T COG4221 83 DILVNNA-----GLALGDPL--DEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHII-NLGSIA 142 (246)
T ss_pred cEEEecC-----CCCcCChh--hhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEE-Eecccc
Confidence 9999876 44444322 23344555444443333233332222111 1 3456554 456654
No 481
>PLN00198 anthocyanidin reductase; Provisional
Probab=68.79 E-value=63 Score=32.91 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=47.8
Q ss_pred cCCCCCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecCCCCCc---cccCCC
Q 010971 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELP---KVLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~-g~~nv~v~~~D~~~~~---~~~~~~ 248 (496)
|.|..+.+||= ..|+|..+.+|+..+-..| .|+++..+......+.. +..+ ...++.++..|.++.. ..+ .
T Consensus 4 ~~~~~~~~vlI-tG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~ 79 (338)
T PLN00198 4 LTPTGKKTACV-IGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPI--A 79 (338)
T ss_pred ccCCCCCeEEE-ECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHH--h
Confidence 44566777774 4566999999988665444 77777665543332221 1111 1235777888887643 222 4
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.|+--|
T Consensus 80 ~~d~vih~A 88 (338)
T PLN00198 80 GCDLVFHVA 88 (338)
T ss_pred cCCEEEEeC
Confidence 689998754
No 482
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=68.77 E-value=20 Score=38.81 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=66.0
Q ss_pred CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH-----------HHcCCCeEEEEecCCCCCccccCCCCcCEEEEC
Q 010971 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL-----------HRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 188 gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl-----------~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlD 256 (496)
|.|.-++.+|..+...-.|+++|+++.+++.+.... ...| +..+. .+. ... ...|+|++=
T Consensus 13 GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g--~l~~t-~~~----~~~--~~advvii~ 83 (425)
T PRK15182 13 GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR--YLKFT-SEI----EKI--KECNFYIIT 83 (425)
T ss_pred CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC--CeeEE-eCH----HHH--cCCCEEEEE
Confidence 677777777777655468999999999999887221 1111 11221 111 112 468999985
Q ss_pred CCCCCCCcc-cCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 010971 257 APCSGTGVI-SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 257 aPCSg~G~i-~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCSi~~eENE~vV~~~L~~ 330 (496)
.| +..- ...|++ . -+..+.+.+.+.+++| .+|....|+.|...++++..++.+
T Consensus 84 Vp---tp~~~~~~~dl------~-----------~v~~a~~~i~~~l~~g-~lVI~~STv~pgtt~~~~~~~l~~ 137 (425)
T PRK15182 84 VP---TPINTYKQPDL------T-----------PLIKASETVGTVLNRG-DIVVYESTVYPGCTEEECVPILAR 137 (425)
T ss_pred cC---CCCCCCCCcch------H-----------HHHHHHHHHHHhcCCC-CEEEEecCCCCcchHHHHHHHHHh
Confidence 54 2210 011211 1 1223333333445775 566667889999999988888875
No 483
>PRK08263 short chain dehydrogenase; Provisional
Probab=68.66 E-value=80 Score=31.05 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=46.6
Q ss_pred CeEeeccCCCchHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCc
Q 010971 180 ERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (496)
Q Consensus 180 ~~VLDmcAgpGgKT~~lA~l~~~-~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~f 250 (496)
..||=.| |+|+.+.+++..+.. ...|++.+.+...+..+...+ + ..+.++..|..+..... ..+.+
T Consensus 4 k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (275)
T PRK08263 4 KVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY---G-DRLLPLALDVTDRAAVFAAVETAVEHFGRL 78 (275)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---c-CCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4566555 578888888876643 347899999988776655432 2 23556677776542211 11468
Q ss_pred CEEEECCC
Q 010971 251 DRVLLDAP 258 (496)
Q Consensus 251 D~VLlDaP 258 (496)
|.|+..+-
T Consensus 79 d~vi~~ag 86 (275)
T PRK08263 79 DIVVNNAG 86 (275)
T ss_pred CEEEECCC
Confidence 99888553
No 484
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=68.55 E-value=36 Score=34.81 Aligned_cols=98 Identities=20% Similarity=0.233 Sum_probs=56.5
Q ss_pred hcCCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccC
Q 010971 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLG 246 (496)
Q Consensus 173 ~L~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~ 246 (496)
...+++|++||=.++ |+.+..++++....| .|++.+.+..+.+.+. .+|.+.+ ++.....+. ....
T Consensus 167 ~~~~~~g~~vlI~g~--g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~----~~ga~~~--i~~~~~~~~~~l~~~~~ 238 (351)
T cd08233 167 RSGFKPGDTALVLGA--GPIGLLTILALKAAGASKIIVSEPSEARRELAE----ELGATIV--LDPTEVDVVAEVRKLTG 238 (351)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCCEE--ECCCccCHHHHHHHHhC
Confidence 345678898887753 555555444433323 6899999999887663 3576433 222111111 1122
Q ss_pred CCCcCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
...+|.||- |+|.+ ..+..+++.+ ++||.++.
T Consensus 239 ~~~~d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~ 270 (351)
T cd08233 239 GGGVDVSFD---CAGVQ-------------------------ATLDTAIDAL----RPRGTAVN 270 (351)
T ss_pred CCCCCEEEE---CCCCH-------------------------HHHHHHHHhc----cCCCEEEE
Confidence 235999875 55432 1356666766 89998764
No 485
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=68.38 E-value=9.5 Score=34.15 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=26.9
Q ss_pred eccCCCc--hHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHH
Q 010971 184 DMAAAPG--GKTTYIA-ALMKNTGLIYANEMKASRLKSLTAN 222 (496)
Q Consensus 184 DmcAgpG--gKT~~lA-~l~~~~g~V~A~D~s~~rl~~l~~n 222 (496)
|+||.-| ..++++. +.....+.|+++|.++..+..++.|
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666554 2455568999999999999999999
No 486
>PRK05854 short chain dehydrogenase; Provisional
Probab=68.05 E-value=80 Score=32.10 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=51.8
Q ss_pred CCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecCCCCCcccc--------CCC
Q 010971 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g-~~nv~v~~~D~~~~~~~~--------~~~ 248 (496)
|.+|| +..|+||.+.+++..+- ....|+.+..+..++..+...+.... -.++.++..|..++.... ..+
T Consensus 14 gk~~l-ITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAV-VTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 55666 44456788888887554 33488888999888887777765542 235777788887643211 125
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
..|.++.+|
T Consensus 93 ~iD~li~nA 101 (313)
T PRK05854 93 PIHLLINNA 101 (313)
T ss_pred CccEEEECC
Confidence 689999866
No 487
>PRK07041 short chain dehydrogenase; Provisional
Probab=67.75 E-value=1.1e+02 Score=28.94 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=45.0
Q ss_pred CCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-CCCCcCEEEECCC
Q 010971 187 AAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDRVLLDAP 258 (496)
Q Consensus 187 AgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-~~~~fD~VLlDaP 258 (496)
.|+|+.+.+++..+- ....|++++.+..++..+...+.. + .++.++..|..+.... + ..+.+|.++..+.
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag 78 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-G-APVRTAALDITDEAAVDAFFAEAGPFDHVVITAA 78 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CceEEEEccCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 467888887777653 334899999998887776665542 2 2466677787654211 1 1246898888654
No 488
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=67.30 E-value=19 Score=34.77 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=63.1
Q ss_pred CchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEecCCCCCcccc--------CC-CCcCEEEECC
Q 010971 189 PGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANL-HRMGVTNTIVCNYDGNELPKVL--------GL-NTVDRVLLDA 257 (496)
Q Consensus 189 pGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl-~r~g~~nv~v~~~D~~~~~~~~--------~~-~~fD~VLlDa 257 (496)
++|.+..+|..+. ....|+.++.+...+....+.+ +..+.. ++..|..+..... .. +.+|.++..+
T Consensus 5 s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~---~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a 81 (241)
T PF13561_consen 5 SSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE---VIQCDLSDEESVEALFDEAVERFGGRIDILVNNA 81 (241)
T ss_dssp TSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE---EEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEE
T ss_pred CCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc---eEeecCcchHHHHHHHHHHHhhcCCCeEEEEecc
Confidence 5788888887654 3458999999999864444444 445633 4778876532111 12 6889888754
Q ss_pred CCCCCCcccCCchhhccCCHHHHH----HHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQ----KCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~----~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYST 312 (496)
.-+..... ..| .+..+.+++. ....-...++..++..+ +++|.+|+.+
T Consensus 82 ~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~gsii~is 133 (241)
T PF13561_consen 82 GISPPSNV-EKP--LLDLSEEDWDKTFDINVFSPFLLAQAALPLM----KKGGSIINIS 133 (241)
T ss_dssp ESCTGGGT-SSS--GGGSHHHHHHHHHHHHTHHHHHHHHHHHHHH----HHEEEEEEEE
T ss_pred cccccccC-CCC--hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCCccccc
Confidence 32211000 011 1112222222 22233445666666655 7788887764
No 489
>PRK05884 short chain dehydrogenase; Provisional
Probab=67.19 E-value=71 Score=30.59 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=40.2
Q ss_pred cCCCchHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---cC--CCCcCEEEECC
Q 010971 186 AAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG--LNTVDRVLLDA 257 (496)
Q Consensus 186 cAgpGgKT~~lA~l~~~~-g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~~--~~~fD~VLlDa 257 (496)
..|+|+.+.+++..+... ..|+.++.+..++..+.+.+ + +.++..|..+.... .. ...+|.++..+
T Consensus 6 tGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~---~---~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~a 77 (223)
T PRK05884 6 TGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL---D---VDAIVCDNTDPASLEEARGLFPHHLDTIVNVP 77 (223)
T ss_pred EeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c---CcEEecCCCCHHHHHHHHHHHhhcCcEEEECC
Confidence 345677888887766433 48899999988876655433 2 33455676553211 10 12589888765
No 490
>PRK08862 short chain dehydrogenase; Provisional
Probab=67.05 E-value=97 Score=29.91 Aligned_cols=77 Identities=9% Similarity=0.022 Sum_probs=49.4
Q ss_pred CCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccc---c-----CCC-
Q 010971 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN- 248 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~---~-----~~~- 248 (496)
|..+|=.|++. |.+..++..+. ....|+.++.+..+++.+.+.++..|.. +.....|..+.... + ..+
T Consensus 5 ~k~~lVtGas~-GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 5 SSIILITSAGS-VLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDN-VYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CeEEEEECCcc-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCC-eEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56677555554 56666665443 3458889999999998888888777643 44555565543211 1 114
Q ss_pred CcCEEEECC
Q 010971 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~fD~VLlDa 257 (496)
.+|.++..+
T Consensus 83 ~iD~li~na 91 (227)
T PRK08862 83 APDVLVNNW 91 (227)
T ss_pred CCCEEEECC
Confidence 799988865
No 491
>PRK07791 short chain dehydrogenase; Provisional
Probab=67.05 E-value=1e+02 Score=30.76 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=48.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcC-CCcEEEEEeCCH---------HHHHHHHHHHHHcCCCeEEEEecCCCCCccc---
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKA---------SRLKSLTANLHRMGVTNTIVCNYDGNELPKV--- 244 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~-~~g~V~A~D~s~---------~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~--- 244 (496)
.|.++|-.|++ ||.+..++..+- ....|+.++.+. ..+..+...+...|. ++.++..|..+....
T Consensus 5 ~~k~~lITGas-~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAG-GGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-EAVANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC-ceEEEeCCCCCHHHHHHH
Confidence 46677766654 567777776553 334788888765 666666666655554 355667787663211
Q ss_pred ----c-CCCCcCEEEECC
Q 010971 245 ----L-GLNTVDRVLLDA 257 (496)
Q Consensus 245 ----~-~~~~fD~VLlDa 257 (496)
. ..+.+|.++..|
T Consensus 83 ~~~~~~~~g~id~lv~nA 100 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNA 100 (286)
T ss_pred HHHHHHhcCCCCEEEECC
Confidence 0 126789998865
No 492
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.04 E-value=33 Score=33.83 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=40.3
Q ss_pred CCCCCCeEeeccC--CCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCC-CCccccCCCCcC
Q 010971 175 APQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN-ELPKVLGLNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDmcA--gpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~-~~~~~~~~~~fD 251 (496)
..++|++||=.++ +-|-.+.++|..++ ..|++...++.+.+.+ ..+|++.+.....+.. .+... ...+|
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~i~~~--~~~~d 210 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALL----KELGADEVVIDDGAIAEQLRAA--PGGFD 210 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHH----HhcCCcEEEecCccHHHHHHHh--CCCce
Confidence 3567888886654 33444455666553 4688888888776555 3467754422111110 01111 25699
Q ss_pred EEE
Q 010971 252 RVL 254 (496)
Q Consensus 252 ~VL 254 (496)
.||
T Consensus 211 ~vl 213 (320)
T cd08243 211 KVL 213 (320)
T ss_pred EEE
Confidence 887
No 493
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=66.81 E-value=33 Score=34.67 Aligned_cols=97 Identities=24% Similarity=0.276 Sum_probs=53.4
Q ss_pred CCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc----cccCCCC
Q 010971 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLNT 249 (496)
Q Consensus 175 ~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~----~~~~~~~ 249 (496)
.+++|++||..++|. |..+.++|..++ ...|++++.+..+...++ ++|...+ +...-..+. .......
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~----~~g~~~v--i~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAK----EAGATDI--INPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHH----HhCCcEE--EcCCcchHHHHHHHHcCCCC
Confidence 457899999964321 333344555543 236888888887766543 4565432 222111111 1112256
Q ss_pred cCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 010971 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 250 fD~VLlDaPCSg~G~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVY 310 (496)
||.||- |.|.+ ..+..+++.+ +++|+++.
T Consensus 237 ~d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~ 265 (347)
T cd05278 237 VDCVIE---AVGFE-------------------------ETFEQAVKVV----RPGGTIAN 265 (347)
T ss_pred CcEEEE---ccCCH-------------------------HHHHHHHHHh----hcCCEEEE
Confidence 998873 33321 2366667776 89998873
No 494
>PLN00015 protochlorophyllide reductase
Probab=66.49 E-value=65 Score=32.57 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=45.9
Q ss_pred cCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------CCCCcCEEEE
Q 010971 186 AAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDRVLL 255 (496)
Q Consensus 186 cAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~~~~fD~VLl 255 (496)
+.|+||.+..++..+...| .|+..+.+..++..+...+...+ ..+.++..|..+..... ..+..|.++.
T Consensus 3 TGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lIn 81 (308)
T PLN00015 3 TGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPK-DSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVC 81 (308)
T ss_pred eCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4577888888887664444 78888888877766655543222 24666677876643210 1256899998
Q ss_pred CCC
Q 010971 256 DAP 258 (496)
Q Consensus 256 DaP 258 (496)
.|.
T Consensus 82 nAG 84 (308)
T PLN00015 82 NAA 84 (308)
T ss_pred CCC
Confidence 763
No 495
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=66.46 E-value=39 Score=37.53 Aligned_cols=122 Identities=12% Similarity=0.178 Sum_probs=65.6
Q ss_pred HHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc---CCCCcCCcccEEEecCCCCCCCCcccccccEEEeCCcchhHHH
Q 010971 96 ESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL---DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVM 172 (496)
Q Consensus 96 ea~~~~~P~~iRvNtlk~~~~~l~~~L~~~Gv~~---~p~~~~~~~gl~v~~~~~~i~~~~~~~~G~~~iQd~sS~l~v~ 172 (496)
+.+....-+.-.++.. .-.++.+.|.++|+.+ |.++.|+.. ...++-.+..-.+||--++.++..+.-.
T Consensus 80 ~~l~~g~tli~~l~p~--~n~~ll~~l~~k~it~ia~E~vprisra------q~~d~lssma~iAGy~Avi~Aa~~lgr~ 151 (511)
T TIGR00561 80 AELPAGKALVSFIWPA--QNPELMEKLAAKNITVLAMDAVPRISRA------QKLDALSSMANIAGYRAIIEAAHEFGRF 151 (511)
T ss_pred HhcCCCCEEEEEcCcc--CCHHHHHHHHHcCCEEEEeecccccccC------CccCcchhhHHHHHHHHHHHHHHHhhhh
Confidence 3333333344444432 3478899999998864 222122211 1112222222335555555443333221
Q ss_pred ------hcCCCCCCeEeeccCCCchHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeE
Q 010971 173 ------ALAPQEKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 173 ------~L~~~~g~~VLDmcAgpGgKT~-~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv 231 (496)
++...++.+||=+|+|+=|... .++..++ ..|+++|.+..|++.++ .+|...+
T Consensus 152 ~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~----~lGa~~v 211 (511)
T TIGR00561 152 FTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQ----SMGAEFL 211 (511)
T ss_pred cCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HcCCeEE
Confidence 1123467999999998865554 3445553 46999999999866544 4676543
No 496
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=66.41 E-value=55 Score=33.11 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=32.4
Q ss_pred cCCCCCCeEeeccCCC-chHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDmcAgp-GgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||-.++|. |..++++|..++ ..|++...+..+...+ ..+|...
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~----~~~g~~~ 206 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFA----RELGADD 206 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHH----HHhCCCE
Confidence 4567899999985432 334455566553 4788888888777655 3356544
No 497
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=66.28 E-value=64 Score=33.13 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=44.8
Q ss_pred CCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc---ccCCCCcCEEE
Q 010971 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~---~~~~~~fD~VL 254 (496)
|.+||-.| |+|..+.+++..+-..| .|++++.+..........+. .+ .++.++..|.++... .+....+|.|+
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 80 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-LA-KKIEDHFGDIRDAAKLRKAIAEFKPEIVF 80 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-hc-CCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence 56777555 67888998888664334 78898876654332222221 11 245566778765432 22222579888
Q ss_pred ECCC
Q 010971 255 LDAP 258 (496)
Q Consensus 255 lDaP 258 (496)
.-+-
T Consensus 81 h~A~ 84 (349)
T TIGR02622 81 HLAA 84 (349)
T ss_pred ECCc
Confidence 7553
No 498
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=66.18 E-value=11 Score=38.52 Aligned_cols=96 Identities=22% Similarity=0.273 Sum_probs=59.3
Q ss_pred CCCeEeeccCCCchHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccccCCCCcCEEEECC
Q 010971 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDmcAgpGgKT~~lA~l~~~~g~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~~~~~fD~VLlDa 257 (496)
.|..+||.+||-|--+. ..+...++++|++..-+. -.++-|.. .++..|+..+|.. ..+||.+|.=+
T Consensus 45 ~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~----~ak~~~~~--~~~~ad~l~~p~~--~~s~d~~lsia 111 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLG----GAKRSGGD--NVCRADALKLPFR--EESFDAALSIA 111 (293)
T ss_pred CcceeeecccCCcccCc-----CCCcceeeecchhhhhcc----ccccCCCc--eeehhhhhcCCCC--CCccccchhhh
Confidence 48899999999985432 113356888998765433 23333332 5677899888743 47899886411
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHH--HHHHHHHHHHHHhhhhcCCCCcE-EEEE
Q 010971 258 PCSGTGVISKDESVKTSKSLEDIQKCS--YLQKQLILAAIDMVDANSKSGGY-IVYS 311 (496)
Q Consensus 258 PCSg~G~i~r~p~~k~~~s~~~i~~l~--~lQ~~LL~~A~~~l~~~lkpGG~-LVYS 311 (496)
.+..++ ..-..+|++.++.| +|||. +||+
T Consensus 112 ---------------------vihhlsT~~RR~~~l~e~~r~l----rpgg~~lvyv 143 (293)
T KOG1331|consen 112 ---------------------VIHHLSTRERRERALEELLRVL----RPGGNALVYV 143 (293)
T ss_pred ---------------------hhhhhhhHHHHHHHHHHHHHHh----cCCCceEEEE
Confidence 111122 12244677777776 99996 5664
No 499
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=66.11 E-value=37 Score=34.54 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=31.2
Q ss_pred CCCCCCeEeeccCCCchHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCe
Q 010971 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 175 ~~~~g~~VLDmcAgpGgKT~~lA~l~~~~g--~V~A~D~s~~rl~~l~~nl~r~g~~n 230 (496)
.+++|++||=.+ .|+.+..++++.+..| .|++++.+..+...+. .+|++.
T Consensus 163 ~~~~g~~vlI~g--~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~g~~~ 214 (345)
T cd08286 163 KVKPGDTVAIVG--AGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK----KLGATH 214 (345)
T ss_pred CCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCCc
Confidence 456788887743 3665554444433323 6888999988866554 467643
No 500
>PRK06484 short chain dehydrogenase; Validated
Probab=65.97 E-value=60 Score=35.25 Aligned_cols=127 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCCCCeEeeccCCCchHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcccc--------C
Q 010971 176 PQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------G 246 (496)
Q Consensus 176 ~~~g~~VLDmcAgpGgKT~~lA~l~~~~g-~V~A~D~s~~rl~~l~~nl~r~g~~nv~v~~~D~~~~~~~~--------~ 246 (496)
+..|..+| +.-|.||.+..++..+-..| .|+.++.+..+++.+.+.+ -..+..+..|..+..... .
T Consensus 266 ~~~~k~~l-ItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 340 (520)
T PRK06484 266 AESPRVVA-ITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL----GDEHLSVQADITDEAAVESAFAQIQAR 340 (520)
T ss_pred ccCCCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceeEEEccCCCHHHHHHHHHHHHHH
Q ss_pred CCCcCEEEECCCCCCCC-cccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 010971 247 LNTVDRVLLDAPCSGTG-VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 247 ~~~fD~VLlDaPCSg~G-~i~r~p~~k~~~s~~~i~~l~~lQ~~LL~~A~~~l~~~lkpGG~LVYSTCS 314 (496)
.+.+|.++. |.|.. ....-.+.....-...+.....--..++..++..+ +.+|.||+.+..
T Consensus 341 ~g~id~li~---nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~----~~~g~iv~isS~ 402 (520)
T PRK06484 341 WGRLDVLVN---NAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLM----SQGGVIVNLGSI 402 (520)
T ss_pred cCCCCEEEE---CCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHh----ccCCEEEEECch
Done!