BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010972
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OLN|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Closed Form At 1.15 A
Resolution
pdb|2OLO|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Open Form At 1.9a Resolution
Length = 397
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 176 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST--LQELIKNSILCNR 233
G G VT+ + D + ++ + TY AG VVLA G T L E + + +
Sbjct: 167 GATLRAGETVTELVPDADGVSVT---TDRGTYRAGKVVLACGPYTNDLLEPLGARLAYSV 223
Query: 234 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG 271
E + V WF + P +N GFG
Sbjct: 224 YEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFG 261
>pdb|3HZL|A Chain A, Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxidase
Essential For Nikkomycin Biosynthesis: Open Form At
1.55a Resolution
Length = 397
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 176 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST--LQELIKNSILCNR 233
G G VT+ + D + ++ + TY AG VVLA G T L E + + +
Sbjct: 167 GATLRAGETVTELVPDADGVSVT---TDRGTYRAGKVVLACGPYTNDLLEPLGARLAYSV 223
Query: 234 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG 271
E + V WF + P +N GFG
Sbjct: 224 YEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFFGFG 261
>pdb|2Q6U|A Chain A, Semet-Substituted Form Of Nikd
Length = 384
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 176 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST--LQELIKNSILCNR 233
G G VT+ + D + ++ + TY AG VVLA G T L E + + +
Sbjct: 166 GATLRAGETVTELVPDADGVSVT---TDRGTYRAGKVVLACGPYTNDLLEPLGARLAYSV 222
Query: 234 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG 271
E + V WF + P +N GFG
Sbjct: 223 YEXAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFG 260
>pdb|2VL7|A Chain A, Structure Of S. Tokodaii Xpd4
Length = 540
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 222 QELIKNSILCNREEFLKVLN-LASID----VVSVKLWFDKKVTVPNVSNACSGFGDSLAW 276
Q+ I+NS+ CN+++ LK+ + L ID ++ WF +K++ + A
Sbjct: 157 QKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERL 216
Query: 277 TFFDLNKIYDEHK---DDSATVIQADFYHANELMPLKDDQ 313
D K+ D D + +I+ H LMPL D +
Sbjct: 217 NRIDAKKVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRE 256
>pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1AN9|B Chain B, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1EVI|A Chain A, Three-Dimensional Structure Of The Purple Intermediate Of
Porcine Kidney D-Amino Acid Oxidase
pdb|1EVI|B Chain B, Three-Dimensional Structure Of The Purple Intermediate Of
Porcine Kidney D-Amino Acid Oxidase
Length = 340
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 355 KYMMRGFTSFPNLFMAG-DWITTRHGSWRGLMSPDSKLPTGWSTILEMEA-FLKLF 408
K+ +R SF + G D I G W G++ PD L G I++++A +LK F
Sbjct: 158 KFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNF 213
>pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|B Chain B, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|C Chain C, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|D Chain D, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|E Chain E, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|F Chain F, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|G Chain G, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|H Chain H, D-Amino Acid Oxidase From Pig Kidney
pdb|1DAO|A Chain A, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|B Chain B, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|C Chain C, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|D Chain D, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|E Chain E, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|F Chain F, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|G Chain G, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|H Chain H, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DDO|A Chain A, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|B Chain B, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|C Chain C, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|D Chain D, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|E Chain E, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|F Chain F, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|G Chain G, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|H Chain H, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1VE9|A Chain A, Porcine Kidney D-amino Acid Oxidase
pdb|1VE9|B Chain B, Porcine Kidney D-amino Acid Oxidase
Length = 347
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 355 KYMMRGFTSFPNLFMAG-DWITTRHGSWRGLMSPDSKLPTGWSTILEMEA-FLKLF 408
K+ +R SF + G D I G W G++ PD L G I++++A +LK F
Sbjct: 158 KFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNF 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,644,580
Number of Sequences: 62578
Number of extensions: 608746
Number of successful extensions: 1640
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1640
Number of HSP's gapped (non-prelim): 7
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)