Query 010972
Match_columns 496
No_of_seqs 299 out of 2268
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 1.7E-42 3.7E-47 364.3 35.1 395 1-408 129-553 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 1.2E-40 2.7E-45 347.8 34.2 392 1-405 53-474 (474)
3 PLN02612 phytoene desaturase 100.0 6.2E-39 1.3E-43 341.2 36.3 390 1-410 147-550 (567)
4 TIGR03467 HpnE squalene-associ 100.0 4.9E-36 1.1E-40 310.4 33.6 372 1-406 42-419 (419)
5 TIGR02731 phytoene_desat phyto 100.0 9.2E-36 2E-40 311.4 35.1 382 1-404 53-452 (453)
6 PRK07233 hypothetical protein; 100.0 7.8E-32 1.7E-36 280.3 33.2 371 1-408 52-431 (434)
7 PRK12416 protoporphyrinogen ox 100.0 5.5E-29 1.2E-33 261.0 27.6 368 2-408 61-461 (463)
8 COG1232 HemY Protoporphyrinoge 100.0 4.2E-29 9.1E-34 252.7 24.9 361 2-405 56-443 (444)
9 TIGR00562 proto_IX_ox protopor 100.0 1.3E-28 2.9E-33 258.2 28.2 364 1-408 59-460 (462)
10 PLN02576 protoporphyrinogen ox 100.0 2.1E-27 4.6E-32 251.2 26.5 368 1-409 66-488 (496)
11 PRK07208 hypothetical protein; 100.0 7.6E-27 1.6E-31 246.0 28.9 369 1-408 57-461 (479)
12 PRK11883 protoporphyrinogen ox 100.0 5.3E-27 1.1E-31 245.4 26.3 366 2-406 56-450 (451)
13 COG3349 Uncharacterized conser 100.0 1.1E-27 2.4E-32 241.0 19.5 398 1-413 54-468 (485)
14 TIGR02733 desat_CrtD C-3',4' d 99.9 1E-21 2.2E-26 207.5 27.8 293 93-407 167-491 (492)
15 PLN02268 probable polyamine ox 99.9 8.2E-22 1.8E-26 205.2 23.8 280 92-408 130-434 (435)
16 PLN02529 lysine-specific histo 99.9 2.5E-20 5.5E-25 200.5 27.0 292 92-413 285-603 (738)
17 TIGR02734 crtI_fam phytoene de 99.9 4.2E-20 9E-25 195.8 25.4 293 93-409 159-493 (502)
18 PLN03000 amine oxidase 99.9 6.1E-20 1.3E-24 198.1 23.3 235 152-413 372-628 (881)
19 TIGR02730 carot_isom carotene 99.8 9.5E-19 2E-23 184.8 28.5 295 94-409 168-493 (493)
20 PLN02676 polyamine oxidase 99.8 6.4E-20 1.4E-24 192.2 18.4 292 92-411 155-476 (487)
21 PLN02328 lysine-specific histo 99.8 7.6E-19 1.7E-23 189.9 25.0 235 152-413 428-684 (808)
22 KOG1276 Protoporphyrinogen oxi 99.8 5E-19 1.1E-23 172.4 19.0 358 10-405 79-490 (491)
23 PF01593 Amino_oxidase: Flavin 99.8 1.2E-19 2.7E-24 187.7 12.9 295 91-405 138-450 (450)
24 PLN02568 polyamine oxidase 99.8 1.3E-18 2.7E-23 183.8 20.2 292 95-410 160-537 (539)
25 COG1231 Monoamine oxidase [Ami 99.8 3.5E-19 7.5E-24 176.6 14.6 233 155-409 203-448 (450)
26 PLN02976 amine oxidase 99.8 2.6E-18 5.7E-23 190.2 17.5 302 125-455 904-1249(1713)
27 KOG4254 Phytoene desaturase [C 99.7 3.6E-15 7.9E-20 146.2 24.4 241 150-409 253-547 (561)
28 COG2907 Predicted NAD/FAD-bind 99.6 4E-14 8.6E-19 134.8 18.3 233 1-257 64-306 (447)
29 COG1233 Phytoene dehydrogenase 99.6 3E-14 6.6E-19 149.7 19.3 286 93-408 164-481 (487)
30 KOG0029 Amine oxidase [Seconda 99.6 3.4E-14 7.4E-19 147.8 18.1 232 154-410 212-461 (501)
31 COG3380 Predicted NAD/FAD-depe 99.6 3.1E-15 6.8E-20 137.9 7.2 221 158-408 105-331 (331)
32 KOG0685 Flavin-containing amin 99.5 6.7E-13 1.5E-17 132.0 12.9 242 153-410 215-493 (498)
33 PTZ00363 rab-GDP dissociation 99.4 3.7E-12 7.9E-17 131.3 18.4 196 8-217 83-287 (443)
34 PF00996 GDI: GDP dissociation 98.9 5.5E-08 1.2E-12 99.4 17.4 196 5-215 81-284 (438)
35 PRK13977 myosin-cross-reactive 98.6 6.9E-07 1.5E-11 93.7 15.7 125 91-221 158-294 (576)
36 KOG1439 RAB proteins geranylge 98.5 7.9E-07 1.7E-11 87.2 10.5 198 4-215 80-284 (440)
37 PRK00711 D-amino acid dehydrog 98.1 0.00041 8.9E-09 71.8 22.0 56 163-220 202-257 (416)
38 TIGR02352 thiamin_ThiO glycine 98.0 0.00068 1.5E-08 67.8 18.9 68 153-222 126-195 (337)
39 PF01266 DAO: FAD dependent ox 97.9 0.00011 2.3E-09 73.9 13.1 96 126-227 111-209 (358)
40 COG5044 MRS6 RAB proteins gera 97.7 0.00029 6.2E-09 68.9 11.1 193 4-215 81-279 (434)
41 TIGR01373 soxB sarcosine oxida 97.7 0.0077 1.7E-07 62.2 21.6 56 164-220 185-240 (407)
42 TIGR01377 soxA_mon sarcosine o 97.6 0.01 2.2E-07 60.5 21.8 54 164-220 147-200 (380)
43 PF07156 Prenylcys_lyase: Pren 97.6 0.00021 4.6E-09 72.0 8.1 117 93-221 67-188 (368)
44 TIGR03329 Phn_aa_oxid putative 97.3 0.0038 8.2E-08 65.6 14.4 55 163-221 184-238 (460)
45 TIGR03197 MnmC_Cterm tRNA U-34 97.1 0.015 3.3E-07 59.5 15.7 65 153-221 124-191 (381)
46 PRK11259 solA N-methyltryptoph 97.1 0.11 2.5E-06 52.7 21.7 55 164-221 151-205 (376)
47 PRK12409 D-amino acid dehydrog 97.0 0.063 1.4E-06 55.4 19.3 55 164-221 199-259 (410)
48 PRK10015 oxidoreductase; Provi 96.9 0.068 1.5E-06 55.6 18.4 55 164-220 110-164 (429)
49 KOG4405 GDP dissociation inhib 96.8 0.017 3.7E-07 57.4 12.1 159 52-215 177-340 (547)
50 PRK01747 mnmC bifunctional tRN 96.6 0.071 1.5E-06 58.8 16.7 65 153-221 397-464 (662)
51 PF03486 HI0933_like: HI0933-l 96.6 0.0084 1.8E-07 61.6 8.6 65 153-219 100-165 (409)
52 PF06100 Strep_67kDa_ant: Stre 96.6 0.037 7.9E-07 57.1 12.9 140 64-219 121-273 (500)
53 KOG2820 FAD-dependent oxidored 96.5 0.25 5.5E-06 48.3 17.3 61 165-226 156-217 (399)
54 TIGR00031 UDP-GALP_mutase UDP- 96.4 0.0052 1.1E-07 62.4 5.7 115 96-223 129-250 (377)
55 TIGR03378 glycerol3P_GlpB glyc 96.4 0.012 2.6E-07 60.2 8.1 64 161-226 262-328 (419)
56 TIGR03377 glycerol3P_GlpA glyc 96.4 0.15 3.3E-06 54.4 17.0 57 163-221 129-191 (516)
57 COG0644 FixC Dehydrogenases (f 96.3 0.37 8.1E-06 49.5 19.2 56 164-220 97-152 (396)
58 COG2081 Predicted flavoprotein 96.3 0.011 2.4E-07 59.0 7.3 60 154-217 103-164 (408)
59 COG0665 DadA Glycine/D-amino a 96.2 0.57 1.2E-05 47.7 19.6 66 154-222 146-214 (387)
60 PLN02464 glycerol-3-phosphate 96.1 0.45 9.8E-06 52.0 19.4 57 163-220 233-296 (627)
61 COG0578 GlpA Glycerol-3-phosph 96.0 0.48 1E-05 50.0 17.8 68 152-222 153-227 (532)
62 TIGR02032 GG-red-SF geranylger 96.0 0.34 7.4E-06 47.0 16.4 54 164-220 93-148 (295)
63 COG2509 Uncharacterized FAD-de 96.0 0.02 4.4E-07 58.0 7.2 55 164-220 175-230 (486)
64 TIGR02485 CobZ_N-term precorri 95.5 0.053 1.1E-06 56.5 8.8 64 155-219 117-182 (432)
65 PTZ00383 malate:quinone oxidor 95.4 0.049 1.1E-06 57.5 8.1 56 164-221 213-274 (497)
66 COG0579 Predicted dehydrogenas 95.3 0.055 1.2E-06 55.5 7.8 56 164-221 155-212 (429)
67 TIGR03862 flavo_PP4765 unchara 95.3 0.18 4E-06 51.1 11.5 63 153-220 77-141 (376)
68 PRK11728 hydroxyglutarate oxid 95.1 0.08 1.7E-06 54.4 8.3 65 153-220 138-204 (393)
69 PRK08274 tricarballylate dehyd 95.0 0.087 1.9E-06 55.5 8.6 60 157-219 127-191 (466)
70 PF00890 FAD_binding_2: FAD bi 94.8 0.094 2E-06 54.2 8.0 58 162-221 141-204 (417)
71 PLN02697 lycopene epsilon cycl 94.6 3.4 7.4E-05 44.1 19.1 54 164-220 194-248 (529)
72 PRK11101 glpA sn-glycerol-3-ph 94.6 0.13 2.8E-06 55.3 8.6 56 163-220 150-211 (546)
73 PF13738 Pyr_redox_3: Pyridine 94.5 0.083 1.8E-06 48.5 6.2 52 164-218 84-136 (203)
74 TIGR01816 sdhA_forward succina 94.3 0.19 4.1E-06 54.2 9.1 64 155-220 112-181 (565)
75 PRK12845 3-ketosteroid-delta-1 94.2 0.14 3E-06 55.2 7.9 61 156-220 213-278 (564)
76 TIGR00275 flavoprotein, HI0933 94.2 0.19 4.2E-06 51.7 8.6 63 155-220 98-160 (400)
77 PRK10157 putative oxidoreducta 94.0 0.19 4.2E-06 52.2 8.2 55 164-220 110-164 (428)
78 PRK06134 putative FAD-binding 93.9 0.18 3.8E-06 54.7 8.0 56 163-220 218-278 (581)
79 PRK06185 hypothetical protein; 93.9 2.2 4.7E-05 43.9 15.8 60 164-225 110-175 (407)
80 PRK12844 3-ketosteroid-delta-1 93.9 0.2 4.3E-06 54.0 8.3 57 162-220 208-269 (557)
81 COG0029 NadB Aspartate oxidase 93.8 0.67 1.5E-05 47.9 11.2 66 152-218 123-194 (518)
82 PRK07121 hypothetical protein; 93.7 0.22 4.7E-06 52.9 8.2 57 163-220 178-239 (492)
83 PF05834 Lycopene_cycl: Lycope 93.7 6.3 0.00014 40.1 18.5 54 164-221 89-143 (374)
84 PRK05675 sdhA succinate dehydr 93.6 0.31 6.7E-06 52.7 9.1 66 154-220 118-189 (570)
85 PRK12835 3-ketosteroid-delta-1 93.6 0.23 4.9E-06 53.9 8.1 56 164-220 215-275 (584)
86 PRK06175 L-aspartate oxidase; 93.4 0.35 7.5E-06 50.4 8.9 62 156-219 122-188 (433)
87 COG0654 UbiH 2-polyprenyl-6-me 93.4 5.6 0.00012 40.6 17.8 60 164-226 106-169 (387)
88 PRK13369 glycerol-3-phosphate 93.4 4.6 9.9E-05 43.0 17.5 55 163-220 156-215 (502)
89 TIGR01320 mal_quin_oxido malat 93.3 0.29 6.3E-06 51.7 8.1 66 153-220 167-240 (483)
90 PRK05329 anaerobic glycerol-3- 93.3 0.32 6.8E-06 50.4 8.2 55 163-219 260-317 (422)
91 TIGR01813 flavo_cyto_c flavocy 93.2 0.27 5.8E-06 51.3 7.7 56 164-220 132-192 (439)
92 PRK12843 putative FAD-binding 93.2 0.27 5.9E-06 53.2 7.9 56 163-220 222-282 (578)
93 PRK09078 sdhA succinate dehydr 93.0 0.41 8.9E-06 52.1 9.0 60 160-220 147-212 (598)
94 PRK08958 sdhA succinate dehydr 93.0 0.42 9.2E-06 51.8 9.1 65 155-220 136-206 (588)
95 PRK04176 ribulose-1,5-biphosph 92.9 0.32 6.9E-06 46.8 7.2 56 164-220 106-173 (257)
96 PRK07843 3-ketosteroid-delta-1 92.7 0.37 8E-06 52.0 8.0 57 162-220 208-269 (557)
97 PRK06481 fumarate reductase fl 92.7 0.34 7.4E-06 51.6 7.7 55 163-219 191-250 (506)
98 PRK05257 malate:quinone oxidor 92.4 0.41 8.8E-06 50.7 7.8 56 164-221 185-247 (494)
99 PRK08401 L-aspartate oxidase; 92.4 0.58 1.3E-05 49.3 8.9 56 162-220 120-175 (466)
100 TIGR01812 sdhA_frdA_Gneg succi 92.2 0.65 1.4E-05 50.2 9.2 59 160-220 127-191 (566)
101 PRK06452 sdhA succinate dehydr 92.2 0.68 1.5E-05 50.0 9.3 57 162-220 136-198 (566)
102 PRK05945 sdhA succinate dehydr 92.1 0.68 1.5E-05 50.1 9.3 64 155-220 128-197 (575)
103 PRK06847 hypothetical protein; 91.8 0.52 1.1E-05 47.8 7.6 54 164-220 109-163 (375)
104 PRK12842 putative succinate de 91.8 0.56 1.2E-05 50.8 8.2 55 164-220 216-275 (574)
105 PRK07573 sdhA succinate dehydr 91.8 0.73 1.6E-05 50.5 9.0 53 166-220 174-232 (640)
106 TIGR01811 sdhA_Bsu succinate d 91.7 0.75 1.6E-05 50.1 8.9 58 161-219 128-195 (603)
107 TIGR00292 thiazole biosynthesi 91.5 0.75 1.6E-05 44.2 7.8 57 164-220 102-170 (254)
108 PRK12839 hypothetical protein; 91.4 0.69 1.5E-05 50.0 8.2 57 163-220 215-276 (572)
109 PRK07057 sdhA succinate dehydr 91.4 0.95 2E-05 49.2 9.3 61 159-220 145-211 (591)
110 PF01134 GIDA: Glucose inhibit 91.3 0.74 1.6E-05 46.8 7.9 52 164-218 97-150 (392)
111 PF06039 Mqo: Malate:quinone o 91.2 0.86 1.9E-05 46.9 8.1 61 159-222 179-246 (488)
112 PRK08626 fumarate reductase fl 91.0 0.96 2.1E-05 49.7 9.0 56 163-220 159-220 (657)
113 PTZ00139 Succinate dehydrogena 90.9 1 2.2E-05 49.3 9.0 57 162-219 166-228 (617)
114 TIGR00551 nadB L-aspartate oxi 90.8 0.91 2E-05 48.1 8.4 57 162-220 128-189 (488)
115 PRK07512 L-aspartate oxidase; 90.7 0.69 1.5E-05 49.3 7.4 58 161-220 135-197 (513)
116 PRK13339 malate:quinone oxidor 90.6 0.75 1.6E-05 48.6 7.5 55 164-220 186-247 (497)
117 PLN00128 Succinate dehydrogena 90.6 1.1 2.4E-05 49.1 8.9 59 161-220 186-250 (635)
118 PRK07395 L-aspartate oxidase; 90.5 0.91 2E-05 48.9 8.2 58 162-219 134-196 (553)
119 PRK06263 sdhA succinate dehydr 90.3 1.1 2.4E-05 48.1 8.6 58 162-220 134-197 (543)
120 PRK06116 glutathione reductase 90.2 0.91 2E-05 47.5 7.8 53 164-218 210-263 (450)
121 PRK07190 hypothetical protein; 90.2 1.1 2.4E-05 47.4 8.4 59 164-225 111-171 (487)
122 PRK07333 2-octaprenyl-6-methox 90.2 0.92 2E-05 46.5 7.7 54 164-220 113-167 (403)
123 TIGR03364 HpnW_proposed FAD de 90.2 0.69 1.5E-05 46.8 6.7 51 164-221 147-198 (365)
124 PRK12834 putative FAD-binding 90.2 0.87 1.9E-05 49.0 7.7 55 164-220 150-227 (549)
125 PF13454 NAD_binding_9: FAD-NA 90.2 0.95 2.1E-05 39.9 6.7 41 175-218 113-155 (156)
126 PRK12837 3-ketosteroid-delta-1 90.0 1.1 2.3E-05 47.9 8.1 55 164-220 175-235 (513)
127 PF00070 Pyr_redox: Pyridine n 89.9 1 2.3E-05 34.5 5.9 39 161-202 39-77 (80)
128 COG1252 Ndh NADH dehydrogenase 89.6 0.84 1.8E-05 46.7 6.6 52 162-219 209-261 (405)
129 PF00732 GMC_oxred_N: GMC oxid 89.5 0.8 1.7E-05 44.8 6.3 60 168-227 199-265 (296)
130 PRK07251 pyridine nucleotide-d 89.5 1.2 2.5E-05 46.5 7.9 53 164-219 200-252 (438)
131 PRK08205 sdhA succinate dehydr 89.5 1.5 3.2E-05 47.7 8.8 60 161-220 139-206 (583)
132 PRK05714 2-octaprenyl-3-methyl 89.5 1.1 2.4E-05 46.1 7.6 60 164-226 114-175 (405)
133 PRK08773 2-octaprenyl-3-methyl 89.4 1.1 2.4E-05 45.8 7.5 54 164-220 115-169 (392)
134 PRK12266 glpD glycerol-3-phosp 89.3 1.2 2.7E-05 47.4 8.0 55 163-220 156-216 (508)
135 PRK09564 coenzyme A disulfide 89.3 1.2 2.5E-05 46.6 7.7 54 164-220 193-246 (444)
136 KOG1336 Monodehydroascorbate/f 89.3 0.8 1.7E-05 47.0 6.1 60 164-224 257-317 (478)
137 PRK14694 putative mercuric red 89.0 1.3 2.8E-05 46.7 7.7 53 164-219 220-272 (468)
138 PRK08010 pyridine nucleotide-d 88.8 1.2 2.7E-05 46.3 7.5 53 164-219 201-253 (441)
139 PRK14727 putative mercuric red 88.6 1.4 2.9E-05 46.7 7.6 54 164-220 230-283 (479)
140 PRK08275 putative oxidoreducta 88.6 1.5 3.3E-05 47.2 8.2 56 164-220 139-200 (554)
141 TIGR01984 UbiH 2-polyprenyl-6- 88.5 1.3 2.8E-05 45.1 7.2 59 164-225 107-168 (382)
142 KOG2844 Dimethylglycine dehydr 88.3 0.78 1.7E-05 49.0 5.3 95 123-220 147-243 (856)
143 PRK06416 dihydrolipoamide dehy 88.2 1.6 3.5E-05 45.8 7.9 53 164-219 215-271 (462)
144 PRK05249 soluble pyridine nucl 87.6 1.6 3.5E-05 45.7 7.5 53 164-219 218-271 (461)
145 PRK04965 NADH:flavorubredoxin 87.6 1.8 3.9E-05 44.1 7.6 54 164-220 185-239 (377)
146 PRK09897 hypothetical protein; 87.4 1.9 4E-05 46.1 7.7 51 165-218 110-164 (534)
147 PRK07804 L-aspartate oxidase; 87.2 1.7 3.6E-05 46.8 7.4 57 163-220 145-210 (541)
148 PLN02507 glutathione reductase 87.2 1.9 4E-05 45.9 7.6 53 164-219 246-299 (499)
149 PRK07803 sdhA succinate dehydr 87.2 2.7 5.9E-05 46.0 9.1 55 163-219 139-212 (626)
150 TIGR01350 lipoamide_DH dihydro 87.2 2.2 4.7E-05 44.8 8.1 53 164-219 213-268 (461)
151 PRK06069 sdhA succinate dehydr 87.1 2.7 5.8E-05 45.6 8.9 58 161-220 136-200 (577)
152 PRK14989 nitrite reductase sub 87.1 1.9 4.1E-05 48.9 7.9 56 164-220 189-245 (847)
153 PRK06834 hypothetical protein; 86.7 2 4.3E-05 45.5 7.5 59 164-225 102-162 (488)
154 TIGR01988 Ubi-OHases Ubiquinon 86.7 2.1 4.6E-05 43.4 7.5 54 164-220 108-163 (385)
155 TIGR01423 trypano_reduc trypan 86.6 2.1 4.6E-05 45.3 7.6 55 163-219 232-287 (486)
156 PRK06854 adenylylsulfate reduc 86.6 2.3 5E-05 46.4 8.1 55 164-220 134-195 (608)
157 PRK07845 flavoprotein disulfid 86.5 2.1 4.6E-05 45.0 7.6 53 164-219 220-273 (466)
158 PRK06184 hypothetical protein; 86.4 2.5 5.4E-05 44.9 8.1 59 164-225 111-174 (502)
159 PRK08071 L-aspartate oxidase; 86.4 1.4 3E-05 47.0 6.1 55 163-220 131-190 (510)
160 PRK07045 putative monooxygenas 86.4 2.7 5.8E-05 42.9 8.1 60 164-224 108-170 (388)
161 PRK09754 phenylpropionate diox 86.3 2.5 5.5E-05 43.3 7.9 53 164-220 188-241 (396)
162 PRK13748 putative mercuric red 86.3 2.2 4.7E-05 46.1 7.7 53 164-219 312-364 (561)
163 TIGR01176 fum_red_Fp fumarate 86.0 3.7 8E-05 44.5 9.2 64 155-220 125-195 (580)
164 PLN02815 L-aspartate oxidase 85.9 3 6.5E-05 45.3 8.5 58 163-220 156-222 (594)
165 TIGR01424 gluta_reduc_2 glutat 85.9 2.5 5.3E-05 44.2 7.6 53 164-219 209-262 (446)
166 TIGR02462 pyranose_ox pyranose 85.3 2.4 5.1E-05 45.4 7.2 50 176-225 228-284 (544)
167 PRK08163 salicylate hydroxylas 85.2 2.8 6.1E-05 42.8 7.6 55 164-221 111-167 (396)
168 PRK07818 dihydrolipoamide dehy 85.1 3.3 7.2E-05 43.5 8.2 52 164-218 215-271 (466)
169 PRK09231 fumarate reductase fl 85.1 4 8.7E-05 44.3 9.0 58 161-220 132-196 (582)
170 PRK06912 acoL dihydrolipoamide 85.0 3.1 6.8E-05 43.6 8.0 53 164-219 213-267 (458)
171 TIGR01421 gluta_reduc_1 glutat 84.9 3.2 6.9E-05 43.5 7.9 54 164-219 209-264 (450)
172 PRK08020 ubiF 2-octaprenyl-3-m 84.7 3.1 6.6E-05 42.5 7.6 59 164-225 114-175 (391)
173 PF04820 Trp_halogenase: Trypt 84.7 3.7 8.1E-05 43.0 8.3 55 164-220 156-211 (454)
174 PRK06327 dihydrolipoamide dehy 83.9 3.7 8.1E-05 43.3 8.0 53 164-219 226-283 (475)
175 TIGR00136 gidA glucose-inhibit 83.3 3.3 7.2E-05 44.7 7.2 55 164-220 98-154 (617)
176 TIGR02374 nitri_red_nirB nitri 83.2 3.1 6.8E-05 46.8 7.4 53 164-219 184-237 (785)
177 COG4716 Myosin-crossreactive a 83.2 5.2 0.00011 40.0 7.8 95 92-193 160-258 (587)
178 PRK06370 mercuric reductase; V 82.9 4.4 9.6E-05 42.5 8.0 55 164-219 214-270 (463)
179 TIGR01810 betA choline dehydro 82.8 2.2 4.8E-05 45.7 5.8 50 174-225 206-260 (532)
180 PTZ00318 NADH dehydrogenase-li 82.7 3.1 6.8E-05 43.1 6.7 50 163-218 229-278 (424)
181 KOG1346 Programmed cell death 82.7 1.6 3.4E-05 44.1 4.1 68 157-227 384-456 (659)
182 PRK09077 L-aspartate oxidase; 82.5 5.5 0.00012 42.7 8.7 66 155-220 131-207 (536)
183 PF01494 FAD_binding_3: FAD bi 82.5 4.1 8.8E-05 40.5 7.3 61 164-226 113-179 (356)
184 PRK07588 hypothetical protein; 82.4 3.5 7.5E-05 42.2 6.9 57 164-224 105-163 (391)
185 TIGR01292 TRX_reduct thioredox 82.3 4.4 9.4E-05 39.4 7.3 52 164-219 59-111 (300)
186 PRK07608 ubiquinone biosynthes 82.2 4.5 9.7E-05 41.2 7.6 58 164-225 113-173 (388)
187 TIGR03385 CoA_CoA_reduc CoA-di 82.1 3.8 8.2E-05 42.5 7.1 53 164-220 181-233 (427)
188 PTZ00052 thioredoxin reductase 82.0 4.3 9.4E-05 43.1 7.6 54 164-220 224-278 (499)
189 TIGR03140 AhpF alkyl hydropero 81.9 4.4 9.6E-05 43.2 7.7 53 164-219 269-322 (515)
190 PRK08641 sdhA succinate dehydr 81.8 5.5 0.00012 43.3 8.4 59 161-220 132-200 (589)
191 PTZ00306 NADH-dependent fumara 81.7 3.6 7.8E-05 48.5 7.4 57 164-220 546-620 (1167)
192 PTZ00058 glutathione reductase 81.1 5.2 0.00011 43.2 7.8 54 164-219 280-335 (561)
193 PRK05976 dihydrolipoamide dehy 81.1 5.7 0.00012 41.8 8.1 55 164-219 223-280 (472)
194 PRK15317 alkyl hydroperoxide r 81.1 5.1 0.00011 42.8 7.8 53 164-219 268-321 (517)
195 TIGR02053 MerA mercuric reduct 81.0 5.4 0.00012 41.9 7.9 52 164-218 209-264 (463)
196 PRK09126 hypothetical protein; 80.3 5.6 0.00012 40.5 7.5 59 164-225 112-173 (392)
197 PLN02463 lycopene beta cyclase 80.2 5.4 0.00012 41.7 7.4 53 164-220 116-169 (447)
198 PRK08244 hypothetical protein; 80.0 6.9 0.00015 41.4 8.3 59 164-225 102-165 (493)
199 PRK08849 2-octaprenyl-3-methyl 79.9 5.6 0.00012 40.6 7.3 59 164-225 112-173 (384)
200 PRK10262 thioredoxin reductase 79.8 4.1 9E-05 40.3 6.2 54 164-219 187-247 (321)
201 PRK06617 2-octaprenyl-6-methox 79.7 6.1 0.00013 40.2 7.5 59 164-225 106-166 (374)
202 PRK05192 tRNA uridine 5-carbox 79.5 5.4 0.00012 43.2 7.2 54 164-220 102-157 (618)
203 TIGR01790 carotene-cycl lycope 79.1 6.1 0.00013 40.3 7.4 54 164-220 87-141 (388)
204 TIGR01438 TGR thioredoxin and 78.7 6.7 0.00014 41.5 7.6 53 164-219 222-278 (484)
205 PRK06115 dihydrolipoamide dehy 78.3 7.6 0.00017 40.8 7.9 54 164-219 217-275 (466)
206 PRK08013 oxidoreductase; Provi 78.2 6.8 0.00015 40.2 7.4 59 164-225 113-174 (400)
207 TIGR02061 aprA adenosine phosp 78.0 8.8 0.00019 41.9 8.4 57 164-220 128-191 (614)
208 PRK07494 2-octaprenyl-6-methox 77.8 6.5 0.00014 40.0 7.1 54 164-220 113-167 (388)
209 PRK05732 2-octaprenyl-6-methox 77.7 7.1 0.00015 39.8 7.4 54 164-220 114-169 (395)
210 PLN02546 glutathione reductase 77.4 9.1 0.0002 41.3 8.2 55 164-220 295-350 (558)
211 COG1249 Lpd Pyruvate/2-oxoglut 76.6 8.3 0.00018 40.3 7.5 57 159-218 211-270 (454)
212 PLN02661 Putative thiazole syn 76.6 9.8 0.00021 38.3 7.6 52 164-217 174-241 (357)
213 PLN02172 flavin-containing mon 76.5 8 0.00017 40.6 7.4 53 164-219 113-172 (461)
214 PRK06183 mhpA 3-(3-hydroxyphen 76.0 9.7 0.00021 40.9 8.1 59 164-225 115-180 (538)
215 TIGR01316 gltA glutamate synth 76.0 8 0.00017 40.5 7.3 49 169-218 316-385 (449)
216 PRK04965 NADH:flavorubredoxin 75.9 6.4 0.00014 40.0 6.4 45 170-219 66-110 (377)
217 PRK08850 2-octaprenyl-6-methox 75.7 8.5 0.00018 39.5 7.3 59 164-225 113-174 (405)
218 PRK06996 hypothetical protein; 75.5 8.8 0.00019 39.4 7.3 59 164-225 117-181 (398)
219 PRK07364 2-octaprenyl-6-methox 75.1 7.8 0.00017 39.8 6.9 55 164-221 123-182 (415)
220 KOG0404 Thioredoxin reductase 74.8 5.4 0.00012 37.1 4.7 63 154-220 62-124 (322)
221 PRK11749 dihydropyrimidine deh 74.5 9.1 0.0002 40.1 7.3 49 168-218 317-385 (457)
222 PF12831 FAD_oxidored: FAD dep 74.3 1 2.2E-05 46.9 0.0 56 169-226 97-156 (428)
223 TIGR03169 Nterm_to_SelD pyridi 74.2 6.8 0.00015 39.5 6.1 49 164-219 193-242 (364)
224 TIGR03219 salicylate_mono sali 73.9 8 0.00017 39.9 6.6 57 164-225 107-165 (414)
225 PRK12810 gltD glutamate syntha 73.9 9.2 0.0002 40.3 7.1 47 169-217 336-397 (471)
226 KOG1335 Dihydrolipoamide dehyd 73.6 12 0.00027 37.6 7.3 60 158-219 248-313 (506)
227 PRK08243 4-hydroxybenzoate 3-m 73.6 11 0.00024 38.5 7.5 60 164-226 105-170 (392)
228 KOG2404 Fumarate reductase, fl 73.3 6.2 0.00013 38.7 5.0 56 164-221 141-207 (477)
229 PRK07846 mycothione reductase; 72.6 11 0.00024 39.5 7.2 53 164-220 209-262 (451)
230 TIGR02374 nitri_red_nirB nitri 71.6 7.9 0.00017 43.6 6.3 46 169-219 61-107 (785)
231 PRK02106 choline dehydrogenase 71.5 6.4 0.00014 42.5 5.4 50 174-225 213-267 (560)
232 COG3075 GlpB Anaerobic glycero 71.4 7.4 0.00016 38.4 5.1 61 163-225 259-322 (421)
233 COG1635 THI4 Ribulose 1,5-bisp 71.1 14 0.00031 34.4 6.6 56 164-220 111-178 (262)
234 PRK13512 coenzyme A disulfide 71.0 9.6 0.00021 39.7 6.4 50 164-220 191-241 (438)
235 TIGR01989 COQ6 Ubiquinone bios 71.0 13 0.00029 38.6 7.5 61 164-225 119-189 (437)
236 PRK09754 phenylpropionate diox 70.8 9.1 0.0002 39.2 6.1 44 172-220 68-112 (396)
237 PRK12831 putative oxidoreducta 70.5 12 0.00027 39.3 7.1 47 171-218 327-394 (464)
238 TIGR01318 gltD_gamma_fam gluta 70.2 15 0.00033 38.6 7.7 32 170-202 328-359 (467)
239 PRK07236 hypothetical protein; 70.0 13 0.00029 37.8 7.1 42 176-220 112-154 (386)
240 PRK06126 hypothetical protein; 69.9 16 0.00034 39.3 7.9 59 164-225 128-194 (545)
241 COG0446 HcaD Uncharacterized N 69.3 12 0.00026 38.0 6.7 55 164-220 180-237 (415)
242 PRK12769 putative oxidoreducta 68.5 15 0.00033 40.5 7.5 34 168-202 512-545 (654)
243 TIGR03452 mycothione_red mycot 68.4 17 0.00036 38.1 7.6 52 164-219 212-264 (452)
244 PLN02985 squalene monooxygenas 68.2 1.7E+02 0.0037 31.2 15.7 60 164-226 149-215 (514)
245 PRK05868 hypothetical protein; 67.8 16 0.00034 37.2 7.0 50 174-226 116-167 (372)
246 COG1251 NirB NAD(P)H-nitrite r 67.6 5.6 0.00012 43.3 3.7 50 167-219 192-242 (793)
247 PRK06475 salicylate hydroxylas 67.2 19 0.00042 36.8 7.7 59 164-225 109-173 (400)
248 PRK06753 hypothetical protein; 67.2 14 0.00031 37.3 6.6 57 164-225 100-158 (373)
249 TIGR03140 AhpF alkyl hydropero 66.7 16 0.00034 39.0 7.1 50 168-219 393-449 (515)
250 PF01946 Thi4: Thi4 family; PD 66.5 24 0.00052 32.9 7.1 56 164-220 98-165 (230)
251 KOG0042 Glycerol-3-phosphate d 66.1 64 0.0014 34.3 10.7 68 152-220 213-287 (680)
252 PRK08132 FAD-dependent oxidore 65.7 21 0.00046 38.3 7.9 60 164-226 127-192 (547)
253 PRK09564 coenzyme A disulfide 65.4 16 0.00036 37.9 6.8 48 169-219 63-114 (444)
254 COG0492 TrxB Thioredoxin reduc 63.7 21 0.00046 35.2 6.8 58 159-220 58-115 (305)
255 PF07992 Pyr_redox_2: Pyridine 62.7 12 0.00026 33.7 4.7 49 168-218 64-120 (201)
256 PRK11445 putative oxidoreducta 62.4 28 0.0006 35.0 7.6 49 174-225 110-163 (351)
257 TIGR03385 CoA_CoA_reduc CoA-di 62.1 19 0.00041 37.3 6.5 45 172-219 54-102 (427)
258 PF13434 K_oxygenase: L-lysine 62.0 15 0.00032 37.0 5.4 40 177-218 294-339 (341)
259 TIGR03169 Nterm_to_SelD pyridi 61.4 12 0.00025 37.8 4.7 48 167-220 59-107 (364)
260 COG2072 TrkA Predicted flavopr 61.2 26 0.00056 36.6 7.3 55 164-219 84-143 (443)
261 TIGR01292 TRX_reduct thioredox 60.5 26 0.00057 33.8 6.9 52 165-219 179-237 (300)
262 PF13434 K_oxygenase: L-lysine 59.5 15 0.00034 36.8 5.1 43 176-218 109-157 (341)
263 PF00743 FMO-like: Flavin-bind 58.3 32 0.00069 36.9 7.5 42 178-220 102-150 (531)
264 COG0562 Glf UDP-galactopyranos 58.2 18 0.0004 35.6 5.0 112 95-223 131-244 (374)
265 PRK14989 nitrite reductase sub 57.7 21 0.00045 40.7 6.2 45 170-219 67-112 (847)
266 PRK06263 sdhA succinate dehydr 57.3 6.4 0.00014 42.3 2.0 46 360-408 357-403 (543)
267 PRK12809 putative oxidoreducta 57.3 28 0.00061 38.3 7.0 29 172-201 499-527 (639)
268 PRK06467 dihydrolipoamide dehy 56.7 37 0.00079 35.8 7.6 52 164-219 217-273 (471)
269 COG0445 GidA Flavin-dependent 56.7 14 0.0003 39.1 4.1 56 167-224 105-162 (621)
270 PRK13800 putative oxidoreducta 56.7 38 0.00081 39.0 8.1 55 164-220 141-205 (897)
271 KOG0405 Pyridine nucleotide-di 56.4 29 0.00063 34.7 6.0 61 158-219 226-286 (478)
272 TIGR02023 BchP-ChlP geranylger 56.4 31 0.00067 35.2 6.8 58 164-225 94-161 (388)
273 COG1635 THI4 Ribulose 1,5-bisp 56.2 8.5 0.00018 35.8 2.3 44 363-409 217-260 (262)
274 PRK07538 hypothetical protein; 55.9 38 0.00082 34.8 7.5 61 164-225 104-171 (413)
275 COG2509 Uncharacterized FAD-de 55.8 22 0.00047 36.7 5.3 40 360-409 445-484 (486)
276 PRK12778 putative bifunctional 55.0 32 0.00069 38.7 7.1 32 170-202 616-647 (752)
277 PRK08641 sdhA succinate dehydr 54.4 6.1 0.00013 42.9 1.3 45 360-407 364-409 (589)
278 PRK10262 thioredoxin reductase 54.4 43 0.00094 33.0 7.4 53 164-220 65-117 (321)
279 PRK13984 putative oxidoreducta 53.4 32 0.00069 37.5 6.7 28 173-202 473-500 (604)
280 PRK06292 dihydrolipoamide dehy 53.0 36 0.00078 35.6 6.8 53 164-219 212-267 (460)
281 TIGR00551 nadB L-aspartate oxi 52.9 8.4 0.00018 40.8 2.0 45 360-407 342-388 (488)
282 TIGR03143 AhpF_homolog putativ 52.6 41 0.00088 36.3 7.2 52 164-219 62-113 (555)
283 TIGR02360 pbenz_hydroxyl 4-hyd 52.3 47 0.001 33.9 7.4 60 164-226 105-170 (390)
284 PRK13512 coenzyme A disulfide 51.9 36 0.00078 35.4 6.6 45 173-220 69-117 (438)
285 PF01134 GIDA: Glucose inhibit 51.4 15 0.00033 37.5 3.5 72 320-408 315-388 (392)
286 PRK09231 fumarate reductase fl 50.5 9.5 0.00021 41.4 2.0 46 360-408 367-414 (582)
287 TIGR01372 soxA sarcosine oxida 49.9 51 0.0011 38.3 7.9 58 164-224 353-415 (985)
288 PRK15317 alkyl hydroperoxide r 49.8 38 0.00082 36.2 6.4 51 167-219 391-448 (517)
289 PRK06175 L-aspartate oxidase; 49.7 12 0.00026 39.0 2.5 45 360-407 340-386 (433)
290 PLN02661 Putative thiazole syn 49.3 13 0.00027 37.5 2.5 47 363-412 285-331 (357)
291 PRK12770 putative glutamate sy 48.7 49 0.0011 33.2 6.8 49 167-218 215-284 (352)
292 TIGR00292 thiazole biosynthesi 48.7 11 0.00023 36.2 1.9 43 363-408 211-253 (254)
293 PRK05675 sdhA succinate dehydr 48.0 10 0.00022 41.0 1.8 44 362-408 360-405 (570)
294 PRK04176 ribulose-1,5-biphosph 48.0 11 0.00024 36.1 1.8 43 364-409 213-255 (257)
295 PRK08294 phenol 2-monooxygenas 47.9 74 0.0016 35.0 8.4 62 164-226 143-217 (634)
296 PLN02927 antheraxanthin epoxid 47.7 47 0.001 36.6 6.7 48 175-225 204-254 (668)
297 PRK12771 putative glutamate sy 46.3 16 0.00034 39.5 2.9 39 361-409 406-444 (564)
298 PTZ00153 lipoamide dehydrogena 46.2 66 0.0014 35.5 7.6 55 164-219 355-426 (659)
299 PRK08958 sdhA succinate dehydr 46.0 9.8 0.00021 41.4 1.2 44 362-408 378-423 (588)
300 PRK07121 hypothetical protein; 45.9 17 0.00036 38.6 3.0 43 362-407 447-490 (492)
301 PRK05945 sdhA succinate dehydr 45.6 11 0.00023 40.9 1.5 44 362-408 368-413 (575)
302 TIGR01811 sdhA_Bsu succinate d 45.5 12 0.00026 40.8 1.9 45 360-407 379-424 (603)
303 TIGR01816 sdhA_forward succina 45.3 8.9 0.00019 41.5 0.8 44 362-408 351-396 (565)
304 PRK09077 L-aspartate oxidase; 45.1 14 0.00029 39.8 2.1 46 360-408 362-409 (536)
305 PRK07803 sdhA succinate dehydr 44.9 11 0.00024 41.3 1.5 44 361-407 402-446 (626)
306 PRK12775 putative trifunctiona 44.7 57 0.0012 38.0 7.2 49 170-219 617-685 (1006)
307 TIGR01812 sdhA_frdA_Gneg succi 44.5 10 0.00022 41.0 1.1 44 362-408 357-402 (566)
308 PRK09078 sdhA succinate dehydr 44.5 12 0.00025 40.9 1.6 44 362-408 383-428 (598)
309 TIGR01424 gluta_reduc_2 glutat 44.3 49 0.0011 34.5 6.1 50 164-219 92-141 (446)
310 TIGR02028 ChlP geranylgeranyl 43.7 86 0.0019 32.1 7.7 56 164-220 95-160 (398)
311 PRK06069 sdhA succinate dehydr 43.7 9.3 0.0002 41.4 0.6 44 362-408 369-414 (577)
312 COG2303 BetA Choline dehydroge 43.1 44 0.00095 35.9 5.6 51 173-225 214-271 (542)
313 PRK12842 putative succinate de 42.8 16 0.00035 39.5 2.3 48 362-412 522-571 (574)
314 PRK08205 sdhA succinate dehydr 42.4 13 0.00029 40.3 1.5 44 362-408 373-418 (583)
315 COG1251 NirB NAD(P)H-nitrite r 41.6 40 0.00086 37.1 4.8 47 169-220 66-113 (793)
316 TIGR01176 fum_red_Fp fumarate 41.2 16 0.00035 39.6 1.9 46 360-408 366-413 (580)
317 PRK06452 sdhA succinate dehydr 41.1 17 0.00038 39.2 2.2 45 361-408 356-403 (566)
318 PRK12771 putative glutamate sy 40.8 77 0.0017 34.2 7.2 46 172-219 315-379 (564)
319 PRK08274 tricarballylate dehyd 40.6 21 0.00045 37.5 2.7 43 362-407 416-460 (466)
320 PLN00128 Succinate dehydrogena 40.2 15 0.00032 40.4 1.5 44 362-408 421-466 (635)
321 COG1206 Gid NAD(FAD)-utilizing 39.5 18 0.00039 35.8 1.8 71 321-405 294-364 (439)
322 PRK08401 L-aspartate oxidase; 39.2 16 0.00035 38.4 1.6 45 360-407 319-365 (466)
323 COG0445 GidA Flavin-dependent 38.6 29 0.00062 36.9 3.2 74 318-405 317-393 (621)
324 PLN02815 L-aspartate oxidase 38.6 18 0.0004 39.3 1.9 45 360-407 386-432 (594)
325 PRK08071 L-aspartate oxidase; 38.0 15 0.00034 39.1 1.2 45 360-407 341-387 (510)
326 PRK12814 putative NADPH-depend 37.7 30 0.00066 38.1 3.5 40 361-410 463-502 (652)
327 PRK07057 sdhA succinate dehydr 37.6 14 0.0003 40.2 0.8 43 362-407 381-425 (591)
328 KOG2415 Electron transfer flav 37.4 69 0.0015 32.9 5.4 63 164-227 185-265 (621)
329 PRK12779 putative bifunctional 37.3 96 0.0021 35.9 7.4 48 172-219 494-561 (944)
330 PTZ00139 Succinate dehydrogena 37.2 16 0.00035 39.9 1.2 44 362-408 400-445 (617)
331 COG3486 IucD Lysine/ornithine 37.0 57 0.0012 33.3 4.8 42 176-219 292-339 (436)
332 TIGR01789 lycopene_cycl lycope 36.8 60 0.0013 32.9 5.3 38 176-219 100-137 (370)
333 TIGR00137 gid_trmFO tRNA:m(5)U 36.7 31 0.00068 35.8 3.1 70 321-405 289-359 (433)
334 PRK07573 sdhA succinate dehydr 36.4 21 0.00046 39.2 2.0 41 360-403 415-456 (640)
335 PRK12769 putative oxidoreducta 36.2 19 0.00042 39.7 1.6 40 361-410 614-653 (654)
336 PLN02785 Protein HOTHEAD 34.8 91 0.002 33.9 6.5 54 172-225 230-295 (587)
337 PLN00093 geranylgeranyl diphos 34.5 1.6E+02 0.0034 30.9 8.0 60 164-225 134-205 (450)
338 PRK06481 fumarate reductase fl 34.4 18 0.0004 38.4 1.1 43 362-407 459-502 (506)
339 COG3573 Predicted oxidoreducta 34.1 96 0.0021 30.9 5.7 52 164-217 151-225 (552)
340 TIGR01421 gluta_reduc_1 glutat 33.9 88 0.0019 32.7 6.1 46 166-219 95-140 (450)
341 PRK12839 hypothetical protein; 33.8 26 0.00056 38.0 2.1 46 362-410 523-570 (572)
342 PRK08626 fumarate reductase fl 33.2 27 0.00059 38.5 2.2 46 360-408 381-429 (657)
343 PRK05335 tRNA (uracil-5-)-meth 32.1 65 0.0014 33.4 4.5 73 321-408 290-363 (436)
344 TIGR00136 gidA glucose-inhibit 31.8 50 0.0011 35.9 3.8 35 359-404 351-386 (617)
345 PRK12831 putative oxidoreducta 31.7 24 0.00051 37.2 1.3 40 360-409 422-461 (464)
346 PRK12775 putative trifunctiona 31.5 31 0.00067 40.1 2.3 41 360-410 716-756 (1006)
347 PRK07512 L-aspartate oxidase; 31.3 19 0.0004 38.5 0.5 45 360-407 350-396 (513)
348 KOG1336 Monodehydroascorbate/f 31.2 83 0.0018 32.8 5.0 46 168-218 133-179 (478)
349 PRK06134 putative FAD-binding 31.2 28 0.0006 37.8 1.8 47 362-411 526-574 (581)
350 TIGR01318 gltD_gamma_fam gluta 30.8 30 0.00064 36.4 1.9 39 361-409 428-466 (467)
351 PRK06444 prephenate dehydrogen 30.5 90 0.002 28.6 4.8 20 208-227 31-50 (197)
352 PRK07804 L-aspartate oxidase; 30.4 21 0.00045 38.4 0.7 45 360-407 366-412 (541)
353 PRK05192 tRNA uridine 5-carbox 30.1 66 0.0014 35.0 4.4 61 321-395 320-382 (618)
354 TIGR03143 AhpF_homolog putativ 29.8 38 0.00083 36.5 2.6 39 361-408 270-308 (555)
355 PLN02852 ferredoxin-NADP+ redu 29.7 36 0.00078 36.1 2.3 40 361-409 383-422 (491)
356 TIGR01316 gltA glutamate synth 29.5 27 0.00059 36.5 1.4 39 360-408 411-449 (449)
357 PRK06116 glutathione reductase 29.4 97 0.0021 32.2 5.5 46 166-219 97-142 (450)
358 PTZ00318 NADH dehydrogenase-li 29.3 1.1E+02 0.0024 31.6 5.9 50 167-220 67-125 (424)
359 TIGR01317 GOGAT_sm_gam glutama 29.0 1.3E+02 0.0028 31.9 6.3 26 175-201 349-375 (485)
360 PRK07845 flavoprotein disulfid 28.7 1.4E+02 0.003 31.4 6.5 49 167-219 97-150 (466)
361 PRK12810 gltD glutamate syntha 28.6 32 0.00069 36.2 1.7 39 361-409 427-465 (471)
362 COG3573 Predicted oxidoreducta 27.2 29 0.00064 34.4 1.0 41 362-405 504-549 (552)
363 PRK07395 L-aspartate oxidase; 27.2 31 0.00067 37.2 1.3 44 360-406 356-401 (553)
364 KOG2960 Protein involved in th 27.1 63 0.0014 29.9 3.0 49 362-413 274-322 (328)
365 PRK07843 3-ketosteroid-delta-1 26.7 37 0.00081 36.6 1.8 42 362-406 512-555 (557)
366 PRK12844 3-ketosteroid-delta-1 26.4 46 0.00099 36.0 2.4 44 362-408 505-550 (557)
367 PRK12845 3-ketosteroid-delta-1 25.7 31 0.00068 37.3 1.0 42 362-406 520-563 (564)
368 PF05129 Elf1: Transcription e 25.5 50 0.0011 25.5 1.9 26 431-456 53-78 (81)
369 PRK12843 putative FAD-binding 25.2 44 0.00096 36.2 2.1 44 362-408 527-572 (578)
370 PRK12770 putative glutamate sy 25.0 40 0.00088 33.8 1.6 38 361-408 312-349 (352)
371 TIGR02485 CobZ_N-term precorri 24.8 43 0.00092 34.7 1.8 43 362-407 385-429 (432)
372 PRK12809 putative oxidoreducta 24.3 35 0.00077 37.5 1.1 38 361-408 597-634 (639)
373 PTZ00306 NADH-dependent fumara 23.8 38 0.00082 40.1 1.3 47 362-411 858-905 (1167)
374 PRK12837 3-ketosteroid-delta-1 23.4 34 0.00074 36.5 0.8 42 362-406 467-510 (513)
375 PRK06370 mercuric reductase; V 23.3 1.6E+02 0.0034 30.8 5.8 44 168-219 100-144 (463)
376 PRK12835 3-ketosteroid-delta-1 23.3 46 0.001 36.2 1.8 45 362-409 525-571 (584)
377 PLN02546 glutathione reductase 23.2 1.6E+02 0.0035 31.8 5.9 47 166-220 182-228 (558)
378 COG3634 AhpF Alkyl hydroperoxi 23.0 1.2E+02 0.0027 30.4 4.4 56 164-219 268-324 (520)
379 COG2081 Predicted flavoprotein 22.8 25 0.00054 35.8 -0.4 41 363-408 367-407 (408)
380 PRK11749 dihydropyrimidine deh 22.7 40 0.00086 35.3 1.1 40 360-409 413-452 (457)
381 COG1053 SdhA Succinate dehydro 22.6 54 0.0012 35.4 2.1 56 164-220 140-202 (562)
382 KOG2311 NAD/FAD-utilizing prot 22.2 77 0.0017 33.2 2.9 47 176-223 139-189 (679)
383 PRK05976 dihydrolipoamide dehy 21.5 2.3E+02 0.005 29.6 6.6 49 169-219 99-153 (472)
384 COG1053 SdhA Succinate dehydro 21.4 1.3E+02 0.0028 32.5 4.7 45 361-408 366-412 (562)
385 PRK12834 putative FAD-binding 21.0 47 0.001 35.7 1.3 42 362-406 502-548 (549)
386 PF02487 CLN3: CLN3 protein; 20.7 47 0.001 34.1 1.1 36 441-477 272-307 (402)
387 COG4635 HemG Flavodoxin [Energ 20.6 2.3E+02 0.0051 25.0 5.1 81 158-257 12-94 (175)
388 PRK09891 cold shock gene; Prov 20.0 35 0.00075 24.2 0.0 24 454-477 45-68 (76)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=1.7e-42 Score=364.29 Aligned_cols=395 Identities=19% Similarity=0.250 Sum_probs=301.0
Q ss_pred CccccCCCccHHHHHHHhCCCCCCCccc-ceee-ccCCccccccccccCCCCCCCccccc-ccccCCCChhhhhhhhhH-
Q 010972 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQY-SEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPL- 76 (496)
Q Consensus 1 ~H~~~~~y~~~~~Ll~eLGl~~~~~~~~-~~~~-~~~G~~~~~~~~~~~~~l~~P~~~~~-~l~~~~ls~~~kl~~~~~- 76 (496)
+|+|+++|+++++++++||+.+...+.. ...+ ..+|+... ..+. .+++.|++... +++++.+++.+|++++..
T Consensus 129 ~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~-~~~~--~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l 205 (569)
T PLN02487 129 LHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGE-LDFR--FPVGAPLHGIKAFLTTNQLEPYDKARNALAL 205 (569)
T ss_pred eeEecCCcHHHHHHHHhcCCcccccccccceeEEecCCEEee-eccC--CCCCchhhhHHHHHcCCCCCHHHHHhhcccc
Confidence 5999999999999999999987655443 2223 23443211 1111 13566776444 889999999999997421
Q ss_pred -----HHHHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCc
Q 010972 77 -----MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 151 (496)
Q Consensus 77 -----~~~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~ 151 (496)
+..+.+.+...+.|..++++|+.+|+++++.++++++.||+|++.+.++.+++++|+.+++..+..+. ....++
T Consensus 206 ~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~ 284 (569)
T PLN02487 206 ATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEAS 284 (569)
T ss_pred cccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcc
Confidence 11111111113445667899999999999877889999999999999999999999999999886532 244456
Q ss_pred ceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCC-CC--eEEEEEe--C--CeEEecCEEEEcCChhhHHHh
Q 010972 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RC--CISDVVC--G--KETYSAGAVVLAVGISTLQEL 224 (496)
Q Consensus 152 ~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~-~g--~v~~V~~--~--G~~~~Ad~VV~A~p~~~~~~L 224 (496)
+++|++||+++.|.+++++.|+++|++|+++++|++|+.+++ +| ++++|++ + ++++.||+||+|+|++.+.+|
T Consensus 285 ~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L 364 (569)
T PLN02487 285 LLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL 364 (569)
T ss_pred eeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh
Confidence 799999999977999999999999999999999999999742 13 4778887 3 346899999999999999999
Q ss_pred hccccccChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCc------eeeccCC-----CCcce-EEecccccc-cC-CC
Q 010972 225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN------ACSGFGD-----SLAWT-FFDLNKIYD-EH-KD 290 (496)
Q Consensus 225 l~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~------~~~g~~~-----~~~~~-~~d~s~~~~-~~-~~ 290 (496)
+++.. +..+.++.+.++.+.++++++|+||+++..+.+.+ .+.|++. ...|. +++.....+ .+ .+
T Consensus 365 lp~~~-~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~ 443 (569)
T PLN02487 365 LPEQW-REYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKE 443 (569)
T ss_pred CCchh-hccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHccc
Confidence 98762 23445678889988999999999999876443211 1233331 11222 234221111 11 22
Q ss_pred CCCcEEEEEeecCCCCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCCCCCCCCCCEEEc
Q 010972 291 DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMA 370 (496)
Q Consensus 291 ~~~~ll~~~~~~~~~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~~t~i~gL~lA 370 (496)
.+++++.+++++++++..++++++++.++++|.+++|..++.++.+.++.+.+++++...||....||..+|+++|||+|
T Consensus 444 ~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LA 523 (569)
T PLN02487 444 GEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLA 523 (569)
T ss_pred CCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEe
Confidence 34678888888888899999999999999999999999776678888999999999999999988889999999999999
Q ss_pred CCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 371 GDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 371 Gd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
||||.+.+++ +|||||+||. +||+.|++.-
T Consensus 524 GD~t~~~yPa-----t~EgAv~SG~---~AA~~i~~~~ 553 (569)
T PLN02487 524 GSYTKQDYID-----SMEGATLSGR---QAAAYICEAG 553 (569)
T ss_pred CcccccCCcc-----hHHHHHHHHH---HHHHHHHHHh
Confidence 9999985443 4999999999 9999998865
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=1.2e-40 Score=347.80 Aligned_cols=392 Identities=19% Similarity=0.279 Sum_probs=291.7
Q ss_pred CccccCCCccHHHHHHHhCCCCCCCccc-ceeec-cCCccccccccccCCCCCCCccccc-ccccCCCChhhhhhhhhHH
Q 010972 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLM 77 (496)
Q Consensus 1 ~H~~~~~y~~~~~Ll~eLGl~~~~~~~~-~~~~~-~~G~~~~~~~~~~~~~l~~P~~~~~-~l~~~~ls~~~kl~~~~~~ 77 (496)
+|+|++.|++++++++++|+.+...+.. ...+. .+|+... ..+. .+++.|++... +++++.+++.+|++++...
T Consensus 53 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~ 129 (474)
T TIGR02732 53 LHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGE-LDFR--FATGAPFNGLKAFFTTSQLKWVDKLRNALAL 129 (474)
T ss_pred eEEecCchHHHHHHHHHcCCccccccccceeEEEcCCCcccc-cccC--CCCCCchhhhHHHhcCCCCCHHHHHHHHHHh
Confidence 5899999999999999999987655443 33333 2333211 1122 24667776544 7889999999999976532
Q ss_pred --HHHh----ccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCc
Q 010972 78 --AAVI----DFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 151 (496)
Q Consensus 78 --~~~~----~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~ 151 (496)
.... +.+...+.+..++++|+.+|+++++.++.+++.||+|++.++++.+++++|+.+++.+++.+. ....++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~-~~~~~s 208 (474)
T TIGR02732 130 GTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA-AKTEAS 208 (474)
T ss_pred hhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCcc
Confidence 1111 111112345567889999999999888888999999999999999999999999999888554 445567
Q ss_pred ceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecC--CCC-eEEEEEe-CC---eEEecCEEEEcCChhhHHHh
Q 010972 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--ERC-CISDVVC-GK---ETYSAGAVVLAVGISTLQEL 224 (496)
Q Consensus 152 ~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~--~~g-~v~~V~~-~G---~~~~Ad~VV~A~p~~~~~~L 224 (496)
.+.+++||+++.+.+++.+.|+++|++|++|++|++|+.++ ++. ++++|++ +| +++.||+||+|+|++.+.+|
T Consensus 209 ~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L 288 (474)
T TIGR02732 209 KLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL 288 (474)
T ss_pred eeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh
Confidence 88999999988889999999999999999999999999864 212 3677766 33 56899999999999999999
Q ss_pred hccccccChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCc------eeeccC-----CCCcce-EEecccccc-cCCC-
Q 010972 225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN------ACSGFG-----DSLAWT-FFDLNKIYD-EHKD- 290 (496)
Q Consensus 225 l~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~------~~~g~~-----~~~~~~-~~d~s~~~~-~~~~- 290 (496)
+++.. ...+.++.+.++.+.++++|+++|++++..+.+.+ .+.+.+ ....|. +++.+...+ .+.+
T Consensus 289 l~~~~-~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (474)
T TIGR02732 289 LPQEW-RQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKE 367 (474)
T ss_pred CChhh-hcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhcc
Confidence 98742 12345567888888999999999998876432111 011111 111121 223231112 1221
Q ss_pred CCCcEEEEEeecCCCCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCCCCCCCCCCEEEc
Q 010972 291 DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMA 370 (496)
Q Consensus 291 ~~~~ll~~~~~~~~~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~~t~i~gL~lA 370 (496)
..+.++.++++.++++.+++++++++.++++|+++||...+.++.+.++.+.+++++.+.||+...+|..+|+++|||+|
T Consensus 368 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lA 447 (474)
T TIGR02732 368 GQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLA 447 (474)
T ss_pred CCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEe
Confidence 23455666677777788899999999999999999998766678888899999999999999988899999999999999
Q ss_pred CCCccCCCCCCCCCCCCccccccCcChHHHHHHHH
Q 010972 371 GDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFL 405 (496)
Q Consensus 371 Gd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il 405 (496)
|||+.+..++ +||||++||. +||+.||
T Consensus 448 GD~t~~~~pa-----s~egAv~sG~---~aA~~i~ 474 (474)
T TIGR02732 448 GSYTQQDYID-----SMEGATLSGR---QAAAAIL 474 (474)
T ss_pred ccccccCchH-----HHhHHHHHHH---HHHHHhC
Confidence 9999974332 4999999999 9999874
No 3
>PLN02612 phytoene desaturase
Probab=100.00 E-value=6.2e-39 Score=341.21 Aligned_cols=390 Identities=18% Similarity=0.285 Sum_probs=294.7
Q ss_pred CccccCCCccHHHHHHHhCCCCCCCccc-ceee-cc--CCccccccccccCCCCCCCcccc-ccc-ccCCCChhhhhhhh
Q 010972 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQY-SE--EGLEVEFPIFQDLNQLPTPLGTL-FYT-QFSRLPLVDRLTSL 74 (496)
Q Consensus 1 ~H~~~~~y~~~~~Ll~eLGl~~~~~~~~-~~~~-~~--~G~~~~~~~~~~~~~l~~P~~~~-~~l-~~~~ls~~~kl~~~ 74 (496)
+|.|+++|+++++|++|||+++...+.. ...+ .. ++. ..+..+.. .+|.|++.. .++ ..+.+++.+|++++
T Consensus 147 ~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~--~~P~~l~~~~~~l~~~~~ls~~~kl~~~ 223 (567)
T PLN02612 147 LHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGE-FSRFDFPE--VLPAPLNGIWAILRNNEMLTWPEKIKFA 223 (567)
T ss_pred ceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCc-eeeCcCch--hcCChhhhhHHHHhcCccCCHHHHHHHH
Confidence 5899999999999999999987766543 2222 22 122 11111111 145565533 345 46788999999965
Q ss_pred h-HHHHHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCcce
Q 010972 75 P-LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 153 (496)
Q Consensus 75 ~-~~~~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~ 153 (496)
. +...... ..+.+.++|++|+.+|+++++.++.+.+.+|.+++.++++.+|+++|+..++..+..+ +....++.+
T Consensus 224 ~~~~~~~~~---~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~-l~~~~gs~~ 299 (567)
T PLN02612 224 IGLLPAIVG---GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF-LQEKHGSKM 299 (567)
T ss_pred HhhhHHhcc---cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH-HhccCCceE
Confidence 3 2222111 1234456789999999999999999999999999999999999999999999888776 345556778
Q ss_pred EEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHHHhhccccccC
Q 010972 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCN 232 (496)
Q Consensus 154 ~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~Ll~~~~~~~ 232 (496)
.++.|+..+.++++|++.++++|++|++|++|++|+.+++ |++++|++ +|+++.||+||+|+|++.+..|++.... .
T Consensus 300 ~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~-~ 377 (567)
T PLN02612 300 AFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-GTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK-E 377 (567)
T ss_pred eeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC-CcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc-C
Confidence 8888887455899999999999999999999999998765 55666776 6888999999999999999988876422 2
Q ss_pred hHHHHHHhcCCCccEEEEEEEEccCCCCCCCCceeeccCCCCcceEEecccccccCCCCCCcEEEEEeecCCCCCCCCHH
Q 010972 233 REEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDD 312 (496)
Q Consensus 233 ~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~~~~~~~~~d~s~~~~~~~~~~~~ll~~~~~~~~~~~~~~~e 312 (496)
.++.+.++++.+.++++++++|+++++.+..+ .++. ..+....+++++...+.+.+++.+++.+++..+++|.+++++
T Consensus 378 ~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~-~~~~-~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sde 455 (567)
T PLN02612 378 IPYFKKLDKLVGVPVINVHIWFDRKLKNTYDH-LLFS-RSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDE 455 (567)
T ss_pred cHHHHHHHhcCCCCeEEEEEEECcccCCCCCc-eeec-CCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHH
Confidence 34556777788889999999999998643222 2332 222223455665554455545566776666677889999999
Q ss_pred HHHHHHHHHHhHhcCCCC-----CCeeEeEEEEeeCCCceeeCCCCcCCCCCCCCCCCCEEEcCCCccC-CCCCCCCCCC
Q 010972 313 QVVAKAVSYLSKCIKDFS-----TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT-RHGSWRGLMS 386 (496)
Q Consensus 313 el~~~vl~~L~~~~P~~~-----~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~~t~i~gL~lAGd~t~~-~~G~~~~~~~ 386 (496)
++++.++++|+++||+.. ..+++.+.+.+.|.+.+...||...++|..++|++||||||||+.+ ++|.
T Consensus 456 ei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~s------ 529 (567)
T PLN02612 456 DIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLAS------ 529 (567)
T ss_pred HHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhh------
Confidence 999999999999999752 2356777788899998888899877888888999999999999986 4455
Q ss_pred CccccccCcChHHHHHHHHHHcCC
Q 010972 387 PDSKLPTGWSTILEMEAFLKLFQW 410 (496)
Q Consensus 387 megAv~SG~~~~~AA~~il~~lg~ 410 (496)
||||++||. +||++|++.++.
T Consensus 530 meGAv~SG~---~AA~~I~~~~~~ 550 (567)
T PLN02612 530 MEGAVLSGK---LCAQSIVQDYEL 550 (567)
T ss_pred HHHHHHHHH---HHHHHHHHHhcc
Confidence 999999999 999999999864
No 4
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=4.9e-36 Score=310.39 Aligned_cols=372 Identities=25% Similarity=0.331 Sum_probs=273.8
Q ss_pred CccccCCCccHHHHHHHhCCCCCCCccc--ceeeccCCccccccccccCCCCCCCccccc-ccccCCCChhhhhhhhhHH
Q 010972 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLM 77 (496)
Q Consensus 1 ~H~~~~~y~~~~~Ll~eLGl~~~~~~~~--~~~~~~~G~~~~~~~~~~~~~l~~P~~~~~-~l~~~~ls~~~kl~~~~~~ 77 (496)
.|.|++.|+++.+|++|||++....+.. ..++..+|+.. .+.. .++|.|++... +++++.+++.+|.++.+.+
T Consensus 42 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 117 (419)
T TIGR03467 42 QHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGGRLS---RLRL-SRLPAPLHLARGLLRAPGLSWADKLALARAL 117 (419)
T ss_pred CEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCCCCce---eecC-CCCCCCHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999986644222 22222233311 1221 23566766433 5678899999999987655
Q ss_pred HHHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCcceEEec
Q 010972 78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCR 157 (496)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~ 157 (496)
..+.+.. ...++++|+++|++++++++++.+.+++|++.++++.+|+++|+.+++..++..+........+.+++
T Consensus 118 ~~~~~~~-----~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (419)
T TIGR03467 118 LALRRTR-----FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPR 192 (419)
T ss_pred HHHHhcC-----ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeC
Confidence 4433211 13468999999999987899999999999999999999999999998888765332223344688999
Q ss_pred CCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEE-eCCeEEecCEEEEcCChhhHHHhhccccccChHHH
Q 010972 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CGKETYSAGAVVLAVGISTLQELIKNSILCNREEF 236 (496)
Q Consensus 158 GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~-~~G~~~~Ad~VV~A~p~~~~~~Ll~~~~~~~~~~~ 236 (496)
||+++.+.++|++.+++.|++|++|++|++|+.++ +++..+. .+|+++.||+||+|+|++++.+|++.. ...
T Consensus 193 gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~--~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~-----~~~ 265 (419)
T TIGR03467 193 VPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA--GGIRALVLSGGETLPADAVVLAVPPRHAASLLPGE-----DLG 265 (419)
T ss_pred CCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC--CcceEEEecCCccccCCEEEEcCCHHHHHHhCCCc-----hHH
Confidence 99988666779999989999999999999999887 3444223 367789999999999999999998652 223
Q ss_pred HHHhcCCCccEEEEEEEEccCCCCCCCCceeecc-CCCCcceEEecccccccCCCCCCcEEEEEeecCCCCCCCCHHHHH
Q 010972 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF-GDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVV 315 (496)
Q Consensus 237 ~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~d~s~~~~~~~~~~~~ll~~~~~~~~~~~~~~~eel~ 315 (496)
+.++++++.++.++++.|++++|.+.+ .++. +....+ +++.+... +...++.+.+....++..++++++.
T Consensus 266 ~~l~~~~~~~~~~v~l~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~ 336 (419)
T TIGR03467 266 ALLTALGYSPITTVHLRLDRAVRLPAP---MVGLVGGLAQW-LFDRGQLA-----GEPGYLAVVISAARDLVDLPREELA 336 (419)
T ss_pred HHHhhcCCcceEEEEEEeCCCcCCCCC---eeeecCCceeE-EEECCcCC-----CCCCEEEEEEecchhhccCCHHHHH
Confidence 467788888999999999999864333 2222 222233 44433211 1223444434445667778999999
Q ss_pred HHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCCCCCCCCCCEEEcCCCccC-CCCCCCCCCCCccccccC
Q 010972 316 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT-RHGSWRGLMSPDSKLPTG 394 (496)
Q Consensus 316 ~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~~t~i~gL~lAGd~t~~-~~G~~~~~~~megAv~SG 394 (496)
+.++++|++++|......+++..+.+|+++.|.+.||....+|...+|.+||||||||+++ +++. ||||+.||
T Consensus 337 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~------~egA~~SG 410 (419)
T TIGR03467 337 DRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWPAT------MEGAVRSG 410 (419)
T ss_pred HHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCcch------HHHHHHHH
Confidence 9999999999997643356677888998888888888766677777889999999999986 3344 99999999
Q ss_pred cChHHHHHHHHH
Q 010972 395 WSTILEMEAFLK 406 (496)
Q Consensus 395 ~~~~~AA~~il~ 406 (496)
. +||++|++
T Consensus 411 ~---~aA~~i~~ 419 (419)
T TIGR03467 411 Y---QAAEAVLK 419 (419)
T ss_pred H---HHHHHHhC
Confidence 9 99999874
No 5
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=9.2e-36 Score=311.38 Aligned_cols=382 Identities=21% Similarity=0.350 Sum_probs=274.9
Q ss_pred CccccCCCccHHHHHHHhCCCCCCCccc-ceeecc---CCccccccccccCCCCCCCccccc-cc-ccCCCChhhhhhhh
Q 010972 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYSE---EGLEVEFPIFQDLNQLPTPLGTLF-YT-QFSRLPLVDRLTSL 74 (496)
Q Consensus 1 ~H~~~~~y~~~~~Ll~eLGl~~~~~~~~-~~~~~~---~G~~~~~~~~~~~~~l~~P~~~~~-~l-~~~~ls~~~kl~~~ 74 (496)
.|.|+++|+++++++++||+.+...+.. ..++.. +|. ... +. .+.+|.|++... ++ ..+.+++.+|++++
T Consensus 53 ~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (453)
T TIGR02731 53 LHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGT-FSR--FD-FPDIPAPFNGVAAILRNNDMLTWPEKIKFA 128 (453)
T ss_pred cceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcc-eee--cc-CCCCCCCHHHHHHHhcCcCCCCHHHHHHHH
Confidence 4889999999999999999987655443 222321 222 111 11 133556665432 34 34578999999976
Q ss_pred hHH-HHHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCcce
Q 010972 75 PLM-AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 153 (496)
Q Consensus 75 ~~~-~~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~ 153 (496)
..+ ..... ..+.+.++|++|+.+|+++.++++.+.+.++.|++.++++.+|+++|+.+++..++.++ ....+...
T Consensus 129 ~~~~~~~~~---~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~-~~~~g~~~ 204 (453)
T TIGR02731 129 IGLLPAIVR---GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL-QERHGSKM 204 (453)
T ss_pred HHhHHHHhc---CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-hcCCCCee
Confidence 422 22111 12344567999999999998999999999999999999999999999999998888754 33344455
Q ss_pred EEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCe-----EEecCEEEEcCChhhHHHhhcc
Q 010972 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE-----TYSAGAVVLAVGISTLQELIKN 227 (496)
Q Consensus 154 ~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~-----~~~Ad~VV~A~p~~~~~~Ll~~ 227 (496)
.+..|+....++++|.+.++++|++|++|++|++|+.+++ |++++|++ +|+ ++.||+||+|+|++.+.+|++.
T Consensus 205 ~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~ 283 (453)
T TIGR02731 205 AFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQ 283 (453)
T ss_pred EeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCch
Confidence 5666664334899999999999999999999999987654 56777777 444 7899999999999999999865
Q ss_pred ccccChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCceeeccCCCCcceEEecccccccCCCCCCcEEEEEeecCCCCC
Q 010972 228 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELM 307 (496)
Q Consensus 228 ~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~~~~~~~~~d~s~~~~~~~~~~~~ll~~~~~~~~~~~ 307 (496)
.. ......+.+.++++.++++++++++++++.+. ..++..+ +.....++.+.....+.+|++.++.+.+..++.+.
T Consensus 284 ~~-~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~--~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~ 359 (453)
T TIGR02731 284 PW-KQMPFFQKLNGLEGVPVINVHIWFDRKLTTVD--HLLFSRS-PLLSVYADMSETCKEYADPDKSMLELVFAPAADWI 359 (453)
T ss_pred hh-hcCHHHHHhhcCCCCcEEEEEEEEccccCCCC--ceeeeCC-CcceeecchhhhChhhcCCCCeEEEEEecChhhhh
Confidence 42 11234456677778899999999999976321 2222222 22222233332222223345566665555566777
Q ss_pred CCCHHHHHHHHHHHHhHhcCCC----CCCeeEeEEEEeeCCCceeeCCCCcCCCCCCCCCCCCEEEcCCCccC-CCCCCC
Q 010972 308 PLKDDQVVAKAVSYLSKCIKDF----STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT-RHGSWR 382 (496)
Q Consensus 308 ~~~~eel~~~vl~~L~~~~P~~----~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~~t~i~gL~lAGd~t~~-~~G~~~ 382 (496)
+++++++.+.++++|++++|.. ...+++++.+.+.+.+.|...||...++|...+|++||||||+|+.+ ++|.
T Consensus 360 ~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~-- 437 (453)
T TIGR02731 360 GRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLAS-- 437 (453)
T ss_pred cCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCccccc--
Confidence 8999999999999999999852 12346777778888888877788766778888999999999999987 5566
Q ss_pred CCCCCccccccCcChHHHHHHH
Q 010972 383 GLMSPDSKLPTGWSTILEMEAF 404 (496)
Q Consensus 383 ~~~~megAv~SG~~~~~AA~~i 404 (496)
|||||.||. +||++|
T Consensus 438 ----~egAi~SG~---~AA~~v 452 (453)
T TIGR02731 438 ----MEGAVLSGK---LCAQAI 452 (453)
T ss_pred ----HHHHHHHHH---HHHHHh
Confidence 999999999 999987
No 6
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=7.8e-32 Score=280.35 Aligned_cols=371 Identities=19% Similarity=0.247 Sum_probs=264.2
Q ss_pred CccccCCCccHHHHHHHhCCCCCCCccc--ceeeccCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhhHHH
Q 010972 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (496)
Q Consensus 1 ~H~~~~~y~~~~~Ll~eLGl~~~~~~~~--~~~~~~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~~~~ 78 (496)
.|.|++.++++.+|+++||+++...+.. ..++. +|+.+ +++.|.+ +++++.+++.++++......
T Consensus 52 ~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 118 (434)
T PRK07233 52 YHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV-DGKLY---------PLGTPLE---LLRFPHLSLIDKFRLGLLTL 118 (434)
T ss_pred hhhhccccHHHHHHHHHcCCCCceeeccCceEEEE-CCeEe---------cCCCHHH---HHcCCCCCHHHHHHhHHHHH
Confidence 4889999999999999999986544432 23332 34311 1222322 44667788889988654332
Q ss_pred HHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccC--CcceEEe
Q 010972 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK--NFDLVWC 156 (496)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~--~~~~~~~ 156 (496)
.... ...+.+++++|+++|++++ .+++..+.+++|++.+.++.+++++|+.+++..+......... ...+.++
T Consensus 119 ~~~~----~~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
T PRK07233 119 LARR----IKDWRALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYL 193 (434)
T ss_pred hhhh----cccccccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEecc
Confidence 2111 1223456889999999996 6888889999999999999999999999887666543211111 2247789
Q ss_pred cCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhHHHhhccccccChHHH
Q 010972 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEF 236 (496)
Q Consensus 157 ~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~~~Ll~~~~~~~~~~~ 236 (496)
+||++. ++++|++.+++.|++|++|++|++|+.++ ++++.+..+|+++.||+||+|+|++.+.++++..+ +...
T Consensus 194 ~gG~~~-l~~~l~~~l~~~g~~v~~~~~V~~i~~~~--~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~---~~~~ 267 (434)
T PRK07233 194 EGGFAT-LIDALAEAIEARGGEIRLGTPVTSVVIDG--GGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP---ADVL 267 (434)
T ss_pred CCCHHH-HHHHHHHHHHhcCceEEeCCCeeEEEEcC--CceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc---HHHH
Confidence 999987 99999999999999999999999999876 45665666778899999999999999999885432 2334
Q ss_pred HHHhcCCCccEEEEEEEEccCCCCCCCCceeeccC--CCCcceEEecccccccCCCCCCcEEEE-Eee-cCCCCCCCCHH
Q 010972 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG--DSLAWTFFDLNKIYDEHKDDSATVIQA-DFY-HANELMPLKDD 312 (496)
Q Consensus 237 ~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~--~~~~~~~~d~s~~~~~~~~~~~~ll~~-~~~-~~~~~~~~~~e 312 (496)
+.++++.+.++.++++++++++.. . ......+ .+...+ +..+...+...+++++++.+ .+. ...++..++++
T Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~-~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 343 (434)
T PRK07233 268 ARLRRIDYQGVVCMVLKLRRPLTD-Y--YWLNINDPGAPFGGV-IEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDE 343 (434)
T ss_pred hhhcccCccceEEEEEEecCCCCC-C--ceeeecCCCCCcceE-EEecccCCccccCCceEEEEeeecCCCChhhcCCHH
Confidence 566778888899999999988652 1 1111112 123332 22333333222234444322 232 22334567899
Q ss_pred HHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCCCCCCCCCCEEEcCCCccC-CCCCCCCCCCCcccc
Q 010972 313 QVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT-RHGSWRGLMSPDSKL 391 (496)
Q Consensus 313 el~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~~t~i~gL~lAGd~t~~-~~G~~~~~~~megAv 391 (496)
++++.++++|++++|++....+++..+.+|+++.+.+.||+...++...++++|||+|||++.. +.+. ||+|+
T Consensus 344 ~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~------~~~Ai 417 (434)
T PRK07233 344 ELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRS------INGSV 417 (434)
T ss_pred HHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCc------hhHHH
Confidence 9999999999999998755468888899999999988899777777777889999999995433 2234 99999
Q ss_pred ccCcChHHHHHHHHHHc
Q 010972 392 PTGWSTILEMEAFLKLF 408 (496)
Q Consensus 392 ~SG~~~~~AA~~il~~l 408 (496)
.||. +||++|++.+
T Consensus 418 ~sG~---~aA~~i~~~~ 431 (434)
T PRK07233 418 RAGR---RVAREILEDR 431 (434)
T ss_pred HHHH---HHHHHHhhhh
Confidence 9999 9999999865
No 7
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.97 E-value=5.5e-29 Score=260.99 Aligned_cols=368 Identities=13% Similarity=0.133 Sum_probs=249.9
Q ss_pred ccccCCCccHHHHHHHhCCCCCCCccc--c-eeeccCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhhHHH
Q 010972 2 QGFWYPFRNIFSLVDELGIKPFTGWMK--S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (496)
Q Consensus 2 H~~~~~y~~~~~Ll~eLGl~~~~~~~~--~-~~~~~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~~~~ 78 (496)
|.+..+++++++|+++||+++...+.. . .+|. +|+... +.....+..|.++..+++.+++++.+|++.+..+
T Consensus 61 ~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~---~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~- 135 (463)
T PRK12416 61 DSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHP---IPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDF- 135 (463)
T ss_pred HHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEE---CCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhh-
Confidence 677888999999999999987654332 2 2332 333211 1000011234444456788889999998754321
Q ss_pred HHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHH----------h--
Q 010972 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL----------A-- 146 (496)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~----------~-- 146 (496)
... .. ...+++|+.+|++++ +++++.+.+++|++.++|+.+++++|+..++..+..+.. .
T Consensus 136 --~~~---~~--~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~ 207 (463)
T PRK12416 136 --ITK---NK--EFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENK 207 (463)
T ss_pred --ccC---CC--CCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhh
Confidence 111 11 124789999999985 899999999999999999999999998765554432210 0
Q ss_pred ----ccCCcceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhH
Q 010972 147 ----HQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (496)
Q Consensus 147 ----~~~~~~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~ 221 (496)
..+...+.+++|||++ |+++|++.+.+ ++|++|++|++|+.++ +++. |++ +|+++.||+||+|+|++.+
T Consensus 208 ~~~~~~~~~~~~~~~gG~~~-l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~~-v~~~~g~~~~ad~VI~a~p~~~~ 281 (463)
T PRK12416 208 KQFQSAGNKKFVSFKGGLST-IIDRLEEVLTE--TVVKKGAVTTAVSKQG--DRYE-ISFANHESIQADYVVLAAPHDIA 281 (463)
T ss_pred hccCCCCCCceEeeCCCHHH-HHHHHHHhccc--ccEEcCCEEEEEEEcC--CEEE-EEECCCCEEEeCEEEECCCHHHH
Confidence 0112346778999998 88999988854 6899999999999887 4453 665 5778999999999999999
Q ss_pred HHhhccccccChHHHHHHhcCCCccEEEEEEEEccCCCC-CCCCceeeccC-CCC--cceEEecccccccCCCCCCcEEE
Q 010972 222 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTV-PNVSNACSGFG-DSL--AWTFFDLNKIYDEHKDDSATVIQ 297 (496)
Q Consensus 222 ~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~-~~~~~~~~g~~-~~~--~~~~~d~s~~~~~~~~~~~~ll~ 297 (496)
.+|++.+.+ ...+.++.+.++.+++++|+++.+. +.+..++...+ ... ..+.+. +...+... +++.++.
T Consensus 282 ~~ll~~~~l-----~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~-s~~~~~~~-~~~~~l~ 354 (463)
T PRK12416 282 ETLLQSNEL-----NEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWT-SRKWKHTS-GKQKLLV 354 (463)
T ss_pred HhhcCCcch-----hHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEee-cCCCCCcC-CCCeEEE
Confidence 999876432 2356777888999999999976541 21111121111 111 122232 22222222 3444443
Q ss_pred EEee-----cCCCCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCC----CCCCCCCCCEE
Q 010972 298 ADFY-----HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLF 368 (496)
Q Consensus 298 ~~~~-----~~~~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~r----p~~~t~i~gL~ 368 (496)
..+. ..+++.+++++++.+.++++|+++++... +++...+.+|+.+.|++.+|+.... +....+.+||+
T Consensus 355 ~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~--~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~ 432 (463)
T PRK12416 355 RMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKG--EPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIY 432 (463)
T ss_pred EEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCC--CceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeE
Confidence 3333 22346678999999999999999997432 6778899999999999988864321 12223468999
Q ss_pred EcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 369 MAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 369 lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
+||+|+.+. | |++||.||. +||++|++.+
T Consensus 433 ~aG~~~~g~-~-------i~~ai~sg~---~aA~~i~~~~ 461 (463)
T PRK12416 433 LAGASYYGV-G-------IGACIGNGK---NTANEIIATL 461 (463)
T ss_pred Eeccccccc-c-------HHHHHHHHH---HHHHHHHHHh
Confidence 999997641 2 799999999 9999999765
No 8
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.97 E-value=4.2e-29 Score=252.66 Aligned_cols=361 Identities=18% Similarity=0.211 Sum_probs=251.5
Q ss_pred ccccCCCccHHHHHHHhCCCCCCCccc--ceeeccCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhhHHHH
Q 010972 2 QGFWYPFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAA 79 (496)
Q Consensus 2 H~~~~~y~~~~~Ll~eLGl~~~~~~~~--~~~~~~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~~~~~ 79 (496)
|.|+...+.+++|++|||+++...|.. ..++..+|+.+ ++|.+. ++..|.+...+++..++.+..
T Consensus 56 ~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~---------p~P~~~----i~~ip~~~~~~~~~~~~~~~~ 122 (444)
T COG1232 56 HHFLARKEEILDLIKELGLEDKLLWNSTARKYIYYDGKLH---------PIPTPT----ILGIPLLLLSSEAGLARALQE 122 (444)
T ss_pred hheecchHHHHHHHHHhCcHHhhccCCcccceEeeCCcEE---------ECCccc----eeecCCccccchhHHHHHHHh
Confidence 666767799999999999999888663 34233466521 233332 234444444345554444434
Q ss_pred HhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccC----------
Q 010972 80 VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---------- 149 (496)
Q Consensus 80 ~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~---------- 149 (496)
+.+ .+.+...+++|+++|++++ ++++++++++.|++.++|+.+++++|+....+.+.........
T Consensus 123 ~~~----~~~~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~ 197 (444)
T COG1232 123 FIR----PKSWEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGL 197 (444)
T ss_pred hhc----ccCCCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccC
Confidence 332 2334556899999999996 9999999999999999999999999999665555443110000
Q ss_pred ------CcceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhHHH
Q 010972 150 ------NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (496)
Q Consensus 150 ------~~~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~~~ 223 (496)
...+++++||+++ +.+++++.++.. |++|++|++|..+.. ..+.+..+|+++.||.||+|+|++.+.+
T Consensus 198 ~~~~~~~~~~~~~~gG~~~-l~~al~~~l~~~---i~~~~~V~~i~~~~~--~~~~~~~~g~~~~~D~VI~t~p~~~l~~ 271 (444)
T COG1232 198 PKQSLKKEKFGYLRGGLQS-LIEALAEKLEAK---IRTGTEVTKIDKKGA--GKTIVDVGGEKITADGVISTAPLPELAR 271 (444)
T ss_pred cccccccccccccCccHHH-HHHHHHHHhhhc---eeecceeeEEEEcCC--ccEEEEcCCceEEcceEEEcCCHHHHHH
Confidence 1246788999998 899999988654 999999999999853 3544556788899999999999999999
Q ss_pred hhccccccChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCc-eeeccCC-C-CcceEEecccccccCCCCCCcEEEEEe
Q 010972 224 LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN-ACSGFGD-S-LAWTFFDLNKIYDEHKDDSATVIQADF 300 (496)
Q Consensus 224 Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~-~~~g~~~-~-~~~~~~d~s~~~~~~~~~~~~ll~~~~ 300 (496)
++++.. ......++.+.++++|.++++++.....+++ .+.-.+. . +..++++ |...|...+.+.+++.+.+
T Consensus 272 ll~~~~-----~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~-S~~~p~~~p~g~~ll~~~~ 345 (444)
T COG1232 272 LLGDEA-----VSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFH-SNKWPHEAPEGKTLLRVEF 345 (444)
T ss_pred HcCCcc-----hhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEe-cccCCCCCCCCcEEEEEEe
Confidence 998732 1234567778888899999988621111222 2221222 2 4455665 4444433322455666655
Q ss_pred e-c-CCCCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCC----CCCCCCCCEEEcCCCc
Q 010972 301 Y-H-ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM----RGFTSFPNLFMAGDWI 374 (496)
Q Consensus 301 ~-~-~~~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp----~~~t~i~gL~lAGd~t 374 (496)
+ + .+....++|||+++.++++|.++++... ++++..+.||+.++|+|.+|+...+. ...+..+||+.+|.|.
T Consensus 346 ~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~--~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~ 423 (444)
T COG1232 346 GGPGDESVSTMSDEELVAAVLDDLKKLGGING--DPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYG 423 (444)
T ss_pred ecCCCcchhccCHHHHHHHHHHHHHHHcCcCc--chhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCC
Confidence 4 2 2334456799999999999999998765 34488899999999999999865432 3333458999999986
Q ss_pred cCCCCCCCCCCCCccccccCcChHHHHHHHH
Q 010972 375 TTRHGSWRGLMSPDSKLPTGWSTILEMEAFL 405 (496)
Q Consensus 375 ~~~~G~~~~~~~megAv~SG~~~~~AA~~il 405 (496)
.. .| +..+|.+|. .||++++
T Consensus 424 ~g-~g-------~~d~I~~g~---~aa~~l~ 443 (444)
T COG1232 424 EG-VG-------LPDCIAAGK---EAAEQLL 443 (444)
T ss_pred CC-CC-------chHHHHHHH---HHHHHhh
Confidence 53 23 578889998 8888875
No 9
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.97 E-value=1.3e-28 Score=258.24 Aligned_cols=364 Identities=13% Similarity=0.138 Sum_probs=253.6
Q ss_pred CccccCCCccHHHHHHHhCCCCCCCccc---ceeeccCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhhHH
Q 010972 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK---SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLM 77 (496)
Q Consensus 1 ~H~~~~~y~~~~~Ll~eLGl~~~~~~~~---~~~~~~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~~~ 77 (496)
.|.|.+.++++++|+++||+++...+.. ..++..+|+. .+.|.++..++++..+++.+|++...
T Consensus 59 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~-----------~~~p~~~~~~~~~~~~~~~~~~~~~~-- 125 (462)
T TIGR00562 59 PDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKL-----------MPVPTKIAPFVKTGLFSLGGKLRAGM-- 125 (462)
T ss_pred ccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCce-----------ecCCCChHHHhcCCCCCchhhHHhhh--
Confidence 3889999999999999999987654321 1223222531 23455544566778889899888642
Q ss_pred HHHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHH----------Hhc
Q 010972 78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAH 147 (496)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~----------~~~ 147 (496)
..+.. . ....++|+++|++++ +++++.+.+++|++.++|+.+++++|+.++++.+.... ...
T Consensus 126 ~~~~~---~----~~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~ 197 (462)
T TIGR00562 126 DFIRP---A----SPGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKT 197 (462)
T ss_pred hhccC---C----CCCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhh
Confidence 11110 0 123469999999985 89999999999999999999999999998765543210 000
Q ss_pred c--------------CCcceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEE
Q 010972 148 Q--------------KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAV 212 (496)
Q Consensus 148 ~--------------~~~~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~V 212 (496)
. .+..+..++||+++ |+++|++.+. .++|++|++|++|..++ +++. |++ +|+++.||+|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~l~~~l~--~~~i~~~~~V~~I~~~~--~~~~-v~~~~g~~~~ad~V 271 (462)
T TIGR00562 198 RNLPQGSGLQLTAKKQGQDFQTLATGLET-LPEEIEKRLK--LTKVYKGTKVTKLSHRG--SNYT-LELDNGVTVETDSV 271 (462)
T ss_pred cccCccccccccccccCCceEecchhHHH-HHHHHHHHhc--cCeEEcCCeEEEEEecC--CcEE-EEECCCcEEEcCEE
Confidence 0 01124567899998 8999998874 27899999999999877 3454 666 5678999999
Q ss_pred EEcCChhhHHHhhccccccChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCc-eeecc-CC--CCcceEEecccccccC
Q 010972 213 VLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN-ACSGF-GD--SLAWTFFDLNKIYDEH 288 (496)
Q Consensus 213 V~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~-~~~g~-~~--~~~~~~~d~s~~~~~~ 288 (496)
|+|+|++.+..|+++.+ ....+.+.++.+.++.++.+.|+++.+...... .+... +. .+..++++.+. .+..
T Consensus 272 I~t~P~~~~~~ll~~~~---~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~-~p~~ 347 (462)
T TIGR00562 272 VVTAPHKAAAGLLSELS---NSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKL-FPNR 347 (462)
T ss_pred EECCCHHHHHHHhcccC---HHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccc-cCCc
Confidence 99999999999987532 344567888999999999999988754211111 11111 11 22344666333 3333
Q ss_pred CCCCCcEEEEEee--cCCCCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCCC----CCC
Q 010972 289 KDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR----GFT 362 (496)
Q Consensus 289 ~~~~~~ll~~~~~--~~~~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~----~~t 362 (496)
.+++..++.+.+. .+.++.+.+++++++.++++|+++++. .. .+.+..+++|+.+.|.+.+|+....+. ...
T Consensus 348 ~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi-~~-~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~ 425 (462)
T TIGR00562 348 APPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNI-NN-EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLES 425 (462)
T ss_pred CCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCC-CC-CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHh
Confidence 3333445544332 234566789999999999999999974 33 477889999999999999997543322 223
Q ss_pred CCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 363 SFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 363 ~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
+.+||++||||... . . ||+|+.||. .+|+++++.+
T Consensus 426 ~~~~l~l~G~~~~g-~-~------i~~~i~sg~---~~a~~~~~~~ 460 (462)
T TIGR00562 426 AYPGVFLTGNSFEG-V-G------IPDCIDQGK---AAASDVLTFL 460 (462)
T ss_pred hCCCEEEeccccCC-C-c------HHHHHHHHH---HHHHHHHHhh
Confidence 45799999999753 1 2 799999999 9999998764
No 10
>PLN02576 protoporphyrinogen oxidase
Probab=99.96 E-value=2.1e-27 Score=251.20 Aligned_cols=368 Identities=13% Similarity=0.146 Sum_probs=248.9
Q ss_pred CccccCCCccHHHHHHHhCCCCCCCccc--c-eeeccCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhhHH
Q 010972 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK--S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLM 77 (496)
Q Consensus 1 ~H~~~~~y~~~~~Ll~eLGl~~~~~~~~--~-~~~~~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~~~ 77 (496)
.|.|+..++.+..|+++ |+.+...+.. . .+...+|+. .+.|.++..+++.+++++.+|++++...
T Consensus 66 ~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~~~~~g~~-----------~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 133 (496)
T PLN02576 66 PNSFQPSDPELTSAVDS-GLRDDLVFPDPQAPRYVVWNGKL-----------RPLPSNPIDLPTFDLLSAPGKIRAGLGA 133 (496)
T ss_pred CchhccCcHHHHHHHHc-CChhheecCCCCceEEEEECCEE-----------EEcCCChHHhcCcCcCChhHHHHHhHHH
Confidence 38888899999999988 9986654322 1 111135542 1234444445677889999999865422
Q ss_pred HHHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHH-----------Hh
Q 010972 78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-----------LA 146 (496)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~-----------~~ 146 (496)
..+.+. . ...+++|+++|++++ +++++++.+++|++.++|+.+++++|+..+++.+.... ..
T Consensus 134 ~~~~~~---~---~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~ 206 (496)
T PLN02576 134 FGWKRP---P---PPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKA 206 (496)
T ss_pred hhccCC---C---CCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHh
Confidence 221111 1 124789999999985 89999999999999999999999999998776544320 00
Q ss_pred c------------------cCCcceEEecCCchhhhHHHHHHHHHhcC-CEEEcCceeeeEEecCCCCeEEEEEe---CC
Q 010972 147 H------------------QKNFDLVWCRGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GK 204 (496)
Q Consensus 147 ~------------------~~~~~~~~~~GG~~~~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~g~v~~V~~---~G 204 (496)
. ..+.....++|||++ |+++|++.+ + ++|++|++|++|+..++ +++ .|++ +|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-L~~~la~~l---~~~~i~l~~~V~~I~~~~~-~~~-~v~~~~~~g 280 (496)
T PLN02576 207 IQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQT-LPDALAKRL---GKDKVKLNWKVLSLSKNDD-GGY-SLTYDTPEG 280 (496)
T ss_pred hhhhcccccccccccccccccCCeeEeccchHHH-HHHHHHHhh---CcCcEEcCCEEEEEEECCC-CcE-EEEEecCCC
Confidence 0 012235667899997 889998766 4 68999999999998774 323 2443 34
Q ss_pred -eEEecCEEEEcCChhhHHHhhccccccChHHHHHHhcCCCccEEEEEEEEccCCCCCC-----CCceeecc----CC--
Q 010972 205 -ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-----VSNACSGF----GD-- 272 (496)
Q Consensus 205 -~~~~Ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~-----~~~~~~g~----~~-- 272 (496)
+++.||+||+|+|++.+..+++... +...+.+.++.+.++.+|+++|+++.+... +.. .++. ..
T Consensus 281 ~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~ 356 (496)
T PLN02576 281 KVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLE-GFGQLHPRKQGV 356 (496)
T ss_pred ceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCC-ceEEEccCCCCC
Confidence 3699999999999999999987532 344567788899999999999998765321 111 1111 01
Q ss_pred CCcceEEecccccccCCCCCCcEEEEEee--cCCCCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeC
Q 010972 273 SLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF 350 (496)
Q Consensus 273 ~~~~~~~d~s~~~~~~~~~~~~ll~~~~~--~~~~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~ 350 (496)
....++++ +...+...+++..++..... .++.+.+++++++++.++++|+++++......+....+++|+.+.|.+.
T Consensus 357 ~~lg~~~~-s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~ 435 (496)
T PLN02576 357 KTLGTIYS-SSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYL 435 (496)
T ss_pred ceEEEEee-cCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCC
Confidence 11223444 33333333222333332222 2356777899999999999999999742211345566889999999999
Q ss_pred CCCcCCCCCCC---CCC--CCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 351 PGSYKYMMRGF---TSF--PNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 351 pG~~~~rp~~~---t~i--~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
+|+....+..+ ... +|||+||||+.+ .| +++|+.||. ++|++|+..+.
T Consensus 436 ~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g-~~-------i~~ai~sg~---~aA~~i~~~~~ 488 (496)
T PLN02576 436 LGHLDVLEAAEKMEKDLGLPGLFLGGNYRGG-VA-------LGKCVESGY---EAADLVISYLE 488 (496)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEeccccCC-cc-------HHHHHHHHH---HHHHHHHHHHh
Confidence 99854332222 123 799999999874 22 799999999 99999998763
No 11
>PRK07208 hypothetical protein; Provisional
Probab=99.96 E-value=7.6e-27 Score=245.95 Aligned_cols=369 Identities=16% Similarity=0.131 Sum_probs=242.6
Q ss_pred CccccCCCccHHHHHHHhCCCCCCCcc-c-ceeeccCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhh-HH
Q 010972 1 MQGFWYPFRNIFSLVDELGIKPFTGWM-K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLP-LM 77 (496)
Q Consensus 1 ~H~~~~~y~~~~~Ll~eLGl~~~~~~~-~-~~~~~~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~-~~ 77 (496)
.|.|+..++++++|++|||+.+..... . ..++. +|+. .+.|++...++ ..+++.++++.+. .+
T Consensus 57 ~h~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~g~~-----------~~~p~~~~~~l--~~~~~~~~~~~~~~~~ 122 (479)
T PRK07208 57 GHRFFSKSPEVMDLWNEILPDDDFLLRPRLSRIYY-RGKF-----------FDYPLKAFDAL--KNLGLWRTAKCGASYL 122 (479)
T ss_pred CceeccCCHHHHHHHHHhcCCCccccccccceEEE-CCEE-----------ecCCcchhHHH--HhCCHhHHHHHHHHHH
Confidence 388999999999999999984432221 1 22332 4432 12344432222 2366666666433 12
Q ss_pred HHHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHH---------HHHHHhc-
Q 010972 78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGIL---------YFIILAH- 147 (496)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l---------~~~~~~~- 147 (496)
.... . ...+++|+++|++++ +++++.+.++.|++.++|+.+++++|+.+++..+ +..+...
T Consensus 123 ~~~~-----~---~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (479)
T PRK07208 123 KARL-----R---PRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSL 193 (479)
T ss_pred HHhc-----C---CCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcc
Confidence 1110 0 013689999999984 8999999999999999999999999998654322 2111110
Q ss_pred --------c-C--CcceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe---CCe--EEecCE
Q 010972 148 --------Q-K--NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGA 211 (496)
Q Consensus 148 --------~-~--~~~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G~--~~~Ad~ 211 (496)
. . ...+.+|+||+++ |+++|++.+++.|++|++|++|++|..+++ +.++.++. +|+ ++.||+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~p~gG~~~-l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~ad~ 271 (479)
T PRK07208 194 GLKRRNKEVETSLIEEFRYPKLGPGQ-LWETAAEKLEALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTADQ 271 (479)
T ss_pred cccccCCCccccceeEEeCCCCCcch-HHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEcCE
Confidence 0 0 1356788999998 899999999999999999999999999874 44444443 242 689999
Q ss_pred EEEcCChhhHHHhhccccccChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCceeeccCCCC-cceEEecccccccCCC
Q 010972 212 VVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSL-AWTFFDLNKIYDEHKD 290 (496)
Q Consensus 212 VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~~~~-~~~~~d~s~~~~~~~~ 290 (496)
||+|+|++.+.+++.+. + .+...+.+.++.+.++++++++++++...+..+ ++-.+... ...+...+...+...+
T Consensus 272 VI~a~p~~~l~~~l~~~-~-~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~~~~~p 347 (479)
T PRK07208 272 VISSMPLRELVAALDPP-P-PPEVRAAAAGLRYRDFITVGLLVKELNLFPDNW--IYIHDPDVKVGRLQNFNNWSPYLVP 347 (479)
T ss_pred EEECCCHHHHHHhcCCC-C-CHHHHHHHhCCCcceeEEEEEEecCCCCCCCce--EEecCCCCccceecccccCCcccCC
Confidence 99999999998887643 2 133445567888888899999999875432221 22112111 0101111111122222
Q ss_pred CCC-cEEEEEee--cCCCCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCCC---CCCCC
Q 010972 291 DSA-TVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR---GFTSF 364 (496)
Q Consensus 291 ~~~-~ll~~~~~--~~~~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~---~~t~i 364 (496)
++. ..+.+.+. ...+.++++++++++.++++|+++.+ +....+++.++.+|+.++|.+.+|+....+. ..++.
T Consensus 348 ~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~ 426 (479)
T PRK07208 348 DGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHF 426 (479)
T ss_pred CCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhc
Confidence 223 23332222 33445578999999999999999744 3344788899999999999999887543322 22567
Q ss_pred CCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 365 PNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 365 ~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
+||++||++....+. .||+|+.||. .||+.|++..
T Consensus 427 ~~l~laGr~~~~~~~------~~d~a~~sg~---~~a~~i~~~~ 461 (479)
T PRK07208 427 PNLHLVGRNGMHRYN------NQDHSMLTAM---LAVENIIAGE 461 (479)
T ss_pred CCceeeccccccccC------ChhHHHHHHH---HHHHHHhcCC
Confidence 899999986432222 2899999999 9999998763
No 12
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.96 E-value=5.3e-27 Score=245.36 Aligned_cols=366 Identities=16% Similarity=0.148 Sum_probs=242.9
Q ss_pred ccccCCCccHHHHHHHhCCCCCCCcc--c-ceeeccCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhhHHH
Q 010972 2 QGFWYPFRNIFSLVDELGIKPFTGWM--K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (496)
Q Consensus 2 H~~~~~y~~~~~Ll~eLGl~~~~~~~--~-~~~~~~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~~~~ 78 (496)
|.|++.++++++|+++||+++..... . ..++ .+|+.+. +..-.....|.....++..+.++..++++.....
T Consensus 56 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~-~~g~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 130 (451)
T PRK11883 56 ESFLARKPSAPALVKELGLEDELVANTTGQSYIY-VNGKLHP---IPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADL- 130 (451)
T ss_pred HHhcCCcHHHHHHHHHcCCccceecCCCCcceEE-ECCeEEE---CCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcc-
Confidence 77888999999999999998653322 1 2233 3554211 1100001223333334445777877777643211
Q ss_pred HHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHh------------
Q 010972 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA------------ 146 (496)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~------------ 146 (496)
. ...+...+++|+++|+++. ++++.++.++.|++.++|+.+++++|+..++..+..+...
T Consensus 131 --~-----~~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (451)
T PRK11883 131 --R-----PPRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKAL 202 (451)
T ss_pred --c-----CCCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhc
Confidence 0 1112345789999999984 8999999999999999999999999998765544322100
Q ss_pred --c--cCCcceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhH
Q 010972 147 --H--QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (496)
Q Consensus 147 --~--~~~~~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~ 221 (496)
. ..+....+++||+++ +.++|++.+.+. +|++|++|++|+.++ +.+. |++ +|+++.||+||+|+|++.+
T Consensus 203 ~~~~~~~~~~~~~~~~G~~~-l~~~l~~~l~~~--~i~~~~~V~~i~~~~--~~~~-v~~~~g~~~~~d~vI~a~p~~~~ 276 (451)
T PRK11883 203 PKEKKKTKGVFGTLKGGLQS-LIEALEEKLPAG--TIHKGTPVTKIDKSG--DGYE-IVLSNGGEIEADAVIVAVPHPVL 276 (451)
T ss_pred cccCCCCCCceEeeccHHHH-HHHHHHHhCcCC--eEEeCCEEEEEEEcC--CeEE-EEECCCCEEEcCEEEECCCHHHH
Confidence 0 112345678999998 888888777432 899999999999877 4454 555 6788999999999999999
Q ss_pred HHhhccccccChHHHHHHhcCCCccEEEEEEEEccCCC-CCCCCceeeccCC--CCcceEEecccccccCCCCCCcEEEE
Q 010972 222 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT-VPNVSNACSGFGD--SLAWTFFDLNKIYDEHKDDSATVIQA 298 (496)
Q Consensus 222 ~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~-~~~~~~~~~g~~~--~~~~~~~d~s~~~~~~~~~~~~ll~~ 298 (496)
.+++.++ +..+.++++.+.++.+++++|++++. .+.....++..+. .+..+.++ +...+...+++..++..
T Consensus 277 ~~l~~~~-----~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~p~g~~~~~~ 350 (451)
T PRK11883 277 PSLFVAP-----PAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWT-SKKWPHTTPEGKVLLRL 350 (451)
T ss_pred HHhccCh-----hHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeE-cCcCCCCCCCCcEEEEE
Confidence 9986643 22356778888899999999998852 1211222222122 22233344 32223233223344433
Q ss_pred Eee-c-CCCCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCC----CCCCCCCCCCEEEcCC
Q 010972 299 DFY-H-ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGD 372 (496)
Q Consensus 299 ~~~-~-~~~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~----rp~~~t~i~gL~lAGd 372 (496)
.+. + .....+++++++++.++++|+++++... .+++..+.+|..+.+.+.||+... ++.... ++|||+||+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~--~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~ 427 (451)
T PRK11883 351 YVGRPGDEAVVDATDEELVAFVLADLSKVMGITG--DPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGA 427 (451)
T ss_pred ecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCC--CceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECc
Confidence 332 2 2234567899999999999999986432 466788999999999888886432 222222 679999999
Q ss_pred CccCCCCCCCCCCCCccccccCcChHHHHHHHHH
Q 010972 373 WITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLK 406 (496)
Q Consensus 373 ~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~ 406 (496)
|+.+ +. +++|+.||. .+|++|++
T Consensus 428 ~~~g--~~------i~~av~sg~---~~a~~i~~ 450 (451)
T PRK11883 428 SFEG--VG------LPDCIAQAK---RAAARLLA 450 (451)
T ss_pred ccCC--cc------HHHHHHHHH---HHHHHHHh
Confidence 9752 23 799999999 99999975
No 13
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=1.1e-27 Score=241.03 Aligned_cols=398 Identities=22% Similarity=0.291 Sum_probs=294.0
Q ss_pred CccccCCCccHHHHHHHhCCCCCCCccc-ceeec-cCCccccccccccCCCCCCCccccc-ccccCCCChhhhhhhh-hH
Q 010972 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSL-PL 76 (496)
Q Consensus 1 ~H~~~~~y~~~~~Ll~eLGl~~~~~~~~-~~~~~-~~G~~~~~~~~~~~~~l~~P~~~~~-~l~~~~ls~~~kl~~~-~~ 76 (496)
+|+||++|+|++.||+|++.++.+.+.. ...+. .+++.-....|.. +..|.|++... +++.+.+++++|++++ ++
T Consensus 54 lh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l 132 (485)
T COG3349 54 LHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFAR-PDAPQPTNGLKAFLRLPQLPRREKIRFVLRL 132 (485)
T ss_pred eEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCccccccc-CCCCCcchhhhhhhhccccCHHHHhHHhhcc
Confidence 5999999999999999999997766654 44442 1111100011222 23567777665 8899999999999964 32
Q ss_pred HHHHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCcceEEe
Q 010972 77 MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC 156 (496)
Q Consensus 77 ~~~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~ 156 (496)
...... ..+.++++|++|++|||++.+.++..+...|.|++....+.+|+.+|++.++.++..+.....++.....+
T Consensus 133 ~~~~~g---~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~ 209 (485)
T COG3349 133 GDAPIG---ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNL 209 (485)
T ss_pred ccccch---hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhh
Confidence 222110 24567899999999999999899999999999999999999999999998888877765454456667788
Q ss_pred cCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCC--CeEEEEEeCCe---EEecCEEEEcCChhhHHHhhcccccc
Q 010972 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVCGKE---TYSAGAVVLAVGISTLQELIKNSILC 231 (496)
Q Consensus 157 ~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~--g~v~~V~~~G~---~~~Ad~VV~A~p~~~~~~Ll~~~~~~ 231 (496)
+|+..+.+..++.+.+.+.|.+++++.+|+.|..+... .+++++.+.+. ...++.|+.+...+.+..+++....
T Consensus 210 ~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~- 288 (485)
T COG3349 210 RGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWP- 288 (485)
T ss_pred cCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCccccc-
Confidence 89998889999999999999999999999999886521 34677766553 3466777778777888887777642
Q ss_pred ChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCceeeccC------CCCcceEEecccccccCCCCCC-cEEEEEeecCC
Q 010972 232 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKDDSA-TVIQADFYHAN 304 (496)
Q Consensus 232 ~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~------~~~~~~~~d~s~~~~~~~~~~~-~ll~~~~~~~~ 304 (496)
+...+..+..+...++++++++++...+.....+..++.+ .+....++++...++.+..++. ..+....++..
T Consensus 289 ~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~ 368 (485)
T COG3349 289 KWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGW 368 (485)
T ss_pred ccccccccccccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccc
Confidence 2344456777777899999999986544221111111111 2234456666555555543332 34444455777
Q ss_pred CCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCCCCCCCCCCEEEcCCCccC-CCCCCCC
Q 010972 305 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT-RHGSWRG 383 (496)
Q Consensus 305 ~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~~t~i~gL~lAGd~t~~-~~G~~~~ 383 (496)
.|...+++++...+.+++..++|...+++ .+..+.+.+.+.+..+||...+||...||++|++++|||+.. ..+.
T Consensus 369 ~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~s--- 444 (485)
T COG3349 369 PFLFESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGS--- 444 (485)
T ss_pred cccccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCc---
Confidence 88888999999999999999998876555 567778888999999999999999999999999999999985 2233
Q ss_pred CCCCccccccCcChHHHHHHHHHHcCCCCc
Q 010972 384 LMSPDSKLPTGWSTILEMEAFLKLFQWRKM 413 (496)
Q Consensus 384 ~~~megAv~SG~~~~~AA~~il~~lg~~~~ 413 (496)
||+|..||+ .||+.|+..++....
T Consensus 445 ---mE~A~~sGl---~AA~~v~~~~~~~~~ 468 (485)
T COG3349 445 ---MEGATLSGL---LAANAILDNLGHHAP 468 (485)
T ss_pred ---cchhhhhHH---HHHHHHHHhhhhcCc
Confidence 999999999 999999988875554
No 14
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.90 E-value=1e-21 Score=207.53 Aligned_cols=293 Identities=15% Similarity=0.141 Sum_probs=187.8
Q ss_pred cCCccHHHHHHHhC--CCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCcceEEecCCchhhhHHHHHH
Q 010972 93 YDSITARELFKQFG--CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMD 170 (496)
Q Consensus 93 ~d~~Sv~~~l~~~~--~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~l~~aL~~ 170 (496)
+...|+.+|+++++ .++.+ +.++...+....+.+|++.++...+.++... . .....++++||+++ |+++|++
T Consensus 167 ~~~~s~~~~l~~~~~~~~~~l-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~G~~~~~GG~~~-l~~aL~~ 240 (492)
T TIGR02733 167 LSLLTVADLLRLCGLGDDRRL-RRFLDLQLKLYSQEDADETAALYGATVLQMA--Q--APHGLWHLHGSMQT-LSDRLVE 240 (492)
T ss_pred hhhhhHHHHHHHhCCCccHHH-HHHHHHHHhhhccCChhhhhHHHHHHHhhcc--c--cCCCceeecCcHHH-HHHHHHH
Confidence 45799999999863 34544 5666654433345677788877654433321 1 11245789999998 9999999
Q ss_pred HHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CC-----eEEecCEEEEcCChhhHHHhhccccccChHHHHHHhcCCC
Q 010972 171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLAS 244 (496)
Q Consensus 171 ~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G-----~~~~Ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~ 244 (496)
.++++|++|++|++|++|..++ +++.+|++ +| +++.||+||+|+|+..+.+|++.+.++ ....+.++++++
T Consensus 241 ~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~ 317 (492)
T TIGR02733 241 ALKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLP-PGYRKRLKKLPE 317 (492)
T ss_pred HHHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCC-HHHHHHHhcCCC
Confidence 9999999999999999999987 55556655 44 578999999999999998888754332 234456677775
Q ss_pred cc-EEEEEEEEccCC-CCC-CCCceeeccCCCCcceEEecccccccCCCCCCcEEEE-EeecCCCCCC-------CCHHH
Q 010972 245 ID-VVSVKLWFDKKV-TVP-NVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQA-DFYHANELMP-------LKDDQ 313 (496)
Q Consensus 245 ~~-~~~v~l~~~~~~-~~~-~~~~~~~g~~~~~~~~~~d~s~~~~~~~~~~~~ll~~-~~~~~~~~~~-------~~~ee 313 (496)
.+ .+++++++++.. ... .++. ...++.. ...+...+...+..++++++.+.+ ++.+...|.. ..+++
T Consensus 318 s~~~~~v~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~ 395 (492)
T TIGR02733 318 PSGAFVFYLGVKRAALPVDCPPHL-QFLSDHQ-GSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQ 395 (492)
T ss_pred CCceEEEEEeecccccCCCCCcce-eeccCCC-ceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHH
Confidence 54 668999998743 111 1111 1112211 122222222223344345555433 2223223322 12566
Q ss_pred HHHHHHHHHhHhcCCCCCCeeEeEEEEe----------eCCCceeeCCCCc---CCCCCCCCCCCCEEEcCCCccCCCCC
Q 010972 314 VVAKAVSYLSKCIKDFSTATVMDHKIRR----------FPKSLTHFFPGSY---KYMMRGFTSFPNLFMAGDWITTRHGS 380 (496)
Q Consensus 314 l~~~vl~~L~~~~P~~~~~~v~~~~v~~----------~~~a~~~~~pG~~---~~rp~~~t~i~gL~lAGd~t~~~~G~ 380 (496)
+.+.+++.+++.+|++++ +++...+.. ..++.++...... ..++..+++++|||+||+++++++|.
T Consensus 396 ~~~~il~~le~~~p~l~~-~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG~Gv 474 (492)
T TIGR02733 396 YTQTIIERLGHYFDLLEE-NWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPGEGT 474 (492)
T ss_pred HHHHHHHHHHHHCCCccc-cEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCCCcH
Confidence 889999999999999975 566554421 1233343332211 12344468999999999999986564
Q ss_pred CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 381 WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 381 ~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.|++.||. .||++|++.
T Consensus 475 -------~g~~~sg~---~~a~~i~~~ 491 (492)
T TIGR02733 475 -------AGVSYSAL---MVVRQILAS 491 (492)
T ss_pred -------HHHHHHHH---HHHHHHhhc
Confidence 78889999 999999863
No 15
>PLN02268 probable polyamine oxidase
Probab=99.89 E-value=8.2e-22 Score=205.19 Aligned_cols=280 Identities=17% Similarity=0.106 Sum_probs=186.2
Q ss_pred ccCCccHHHHHHHhC----------CCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCcceEEecCCch
Q 010972 92 KYDSITARELFKQFG----------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR 161 (496)
Q Consensus 92 ~~d~~Sv~~~l~~~~----------~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~ 161 (496)
..+++|+.+|+++.. +++++.+.++.| +.+.++.+++++|+..+.. ... . . ....++++|++
T Consensus 130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~--~~~-~--~--g~~~~~~~G~~ 201 (435)
T PLN02268 130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ--EEL-L--E--GGHGLMVRGYD 201 (435)
T ss_pred cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC--ccc-c--C--CCceeecCCHH
Confidence 357899999876531 344455555566 4567888999999875311 000 0 1 11245778998
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHHHh-h-ccccccChHHHHH
Q 010972 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL-I-KNSILCNREEFLK 238 (496)
Q Consensus 162 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~L-l-~~~~~~~~~~~~~ 238 (496)
+ ++++|++ +.+|++|++|++|...++ .+. |++ +|+++.||+||+|+|+..+++. + ..+.++ ....+.
T Consensus 202 ~-l~~~l~~-----~~~i~~~~~V~~i~~~~~--~v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp-~~~~~a 271 (435)
T PLN02268 202 P-VINTLAK-----GLDIRLNHRVTKIVRRYN--GVK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELP-EWKEEA 271 (435)
T ss_pred H-HHHHHhc-----cCceeCCCeeEEEEEcCC--cEE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCC-HHHHHH
Confidence 7 7776653 568999999999998774 364 666 5778999999999999998753 2 233332 223356
Q ss_pred HhcCCCccEEEEEEEEccCCCCCCCCceeeccCCC--CcceEEecccccccCCCCCCcEEEEEee--cCCCCCCCCHHHH
Q 010972 239 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQV 314 (496)
Q Consensus 239 l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~d~s~~~~~~~~~~~~ll~~~~~--~~~~~~~~~~eel 314 (496)
++++.+.++.++.+.|++++|. .. .+++...+ .....++.. .. .++..++.+... .+..+..++++++
T Consensus 272 i~~~~~g~~~Kv~l~f~~~fw~-~~--~~~g~~~~~~~~~~~~~~~--~~---~~g~~~l~~~~~g~~a~~~~~~~~~e~ 343 (435)
T PLN02268 272 ISDLGVGIENKIALHFDSVFWP-NV--EFLGVVAPTSYGCSYFLNL--HK---ATGHPVLVYMPAGRLARDIEKLSDEAA 343 (435)
T ss_pred HHhCCccceeEEEEEeCCCCCC-CC--ceeeccCCCCCCceEEEec--cc---CCCCCEEEEEeccHHHHHHHhCCHHHH
Confidence 7888888899999999999883 22 23332111 111122211 11 123344443222 2345677899999
Q ss_pred HHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCc-----ee-eCCCCc-CCCCCCCCCCCCEEEcCCCccC-CCCCCCCCCC
Q 010972 315 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL-----TH-FFPGSY-KYMMRGFTSFPNLFMAGDWITT-RHGSWRGLMS 386 (496)
Q Consensus 315 ~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~-----~~-~~pG~~-~~rp~~~t~i~gL~lAGd~t~~-~~G~~~~~~~ 386 (496)
++.++++|++++|... .++...+++|.... |. +.||.. ...+....|+++|||||+++.. ++|.
T Consensus 344 ~~~v~~~L~~~~~~~~--~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~------ 415 (435)
T PLN02268 344 ANFAMSQLKKMLPDAT--EPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGS------ 415 (435)
T ss_pred HHHHHHHHHHHcCCCC--CccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCccccc------
Confidence 9999999999998643 56777888886332 22 345642 2233455788999999999987 6677
Q ss_pred CccccccCcChHHHHHHHHHHc
Q 010972 387 PDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 387 megAv~SG~~~~~AA~~il~~l 408 (496)
||||+.||. +||++|++.|
T Consensus 416 ~eGA~~sG~---raA~~v~~~l 434 (435)
T PLN02268 416 VHGAYSTGV---MAAEECRMRL 434 (435)
T ss_pred HHHHHHHHH---HHHHHHHHhh
Confidence 999999999 9999999764
No 16
>PLN02529 lysine-specific histone demethylase 1
Probab=99.87 E-value=2.5e-20 Score=200.48 Aligned_cols=292 Identities=14% Similarity=0.099 Sum_probs=182.2
Q ss_pred ccCCccHHHHHHHhC------CCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCcceEEecCCchhhhH
Q 010972 92 KYDSITARELFKQFG------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 165 (496)
Q Consensus 92 ~~d~~Sv~~~l~~~~------~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~l~ 165 (496)
..+++|+.+|+++.. .++.. +.++...+.......+..+|...+....... ....+.....+.||++. |+
T Consensus 285 ~~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~--~~e~~G~~~~i~GG~~~-Li 360 (738)
T PLN02529 285 FANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYWDQDD--PYEMGGDHCFLAGGNWR-LI 360 (738)
T ss_pred CccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHhhhcc--ccccCCceEEECCcHHH-HH
Confidence 357899999998643 34433 2344434333333333444433332222211 01122345668899987 87
Q ss_pred HHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhHHH--hhccccccChHHHHHHhcCC
Q 010972 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLA 243 (496)
Q Consensus 166 ~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~~~--Ll~~~~~~~~~~~~~l~~l~ 243 (496)
++|++ +..|++|++|++|..+++ .|. |+++++++.||+||+|+|+.++++ +...++++ ....+.++++.
T Consensus 361 ~aLA~-----~L~IrLnt~V~~I~~~~d--GVt-V~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~ 431 (738)
T PLN02529 361 NALCE-----GVPIFYGKTVDTIKYGND--GVE-VIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELP-RRKLAAIDRLG 431 (738)
T ss_pred HHHHh-----cCCEEcCCceeEEEEcCC--eEE-EEECCEEEEcCEEEECCCHHHHHhccccCCCCCC-HHHHHHHHcCC
Confidence 87775 346999999999999874 464 667777899999999999999984 43344442 33446789999
Q ss_pred CccEEEEEEEEccCCCCCCCCceeeccC------CCCcceEEecccccccCCCCCCcEEEEEee--cCCCCCCCCHHHHH
Q 010972 244 SIDVVSVKLWFDKKVTVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVV 315 (496)
Q Consensus 244 ~~~~~~v~l~~~~~~~~~~~~~~~~g~~------~~~~~~~~d~s~~~~~~~~~~~~ll~~~~~--~~~~~~~~~~eel~ 315 (496)
+.++.++++.|++++|... .. .+|.. .+...++++.+. .+++.++.+... .+..+..+++++++
T Consensus 432 yG~v~KV~L~F~~~FW~~~-~~-~fG~l~~~~~~~g~~~~~~~~~~------~~ggpvLvafv~G~~A~~le~lsdeeii 503 (738)
T PLN02529 432 FGLLNKVAMVFPSVFWGEE-LD-TFGCLNESSNKRGEFFLFYGYHT------VSGGPALVALVAGEAAQRFENTDPSTLL 503 (738)
T ss_pred CceeEEEEEEeCCccccCC-CC-ceEEEeccCCCCceEEEEecCCC------CCCCCEEEEEECchhhHHHhcCCHHHHH
Confidence 9999999999999998421 11 22211 111111122111 123344433222 24456678999999
Q ss_pred HHHHHHHhHhcCC--CCCCeeEeEEEEeeCCCc-----ee-eCCCCcC-CCCCCCCC-CCCEEEcCCCccC-CCCCCCCC
Q 010972 316 AKAVSYLSKCIKD--FSTATVMDHKIRRFPKSL-----TH-FFPGSYK-YMMRGFTS-FPNLFMAGDWITT-RHGSWRGL 384 (496)
Q Consensus 316 ~~vl~~L~~~~P~--~~~~~v~~~~v~~~~~a~-----~~-~~pG~~~-~rp~~~t~-i~gL~lAGd~t~~-~~G~~~~~ 384 (496)
+.+++.|+++|+. .....++...+++|.... |. ..||... .......| .++|||||++|.. ++|.
T Consensus 504 ~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgt---- 579 (738)
T PLN02529 504 HRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPAT---- 579 (738)
T ss_pred HHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeE----
Confidence 9999999999952 211246667778886432 22 2233211 11122244 4789999999997 6676
Q ss_pred CCCccccccCcChHHHHHHHHHHcCCCCc
Q 010972 385 MSPDSKLPTGWSTILEMEAFLKLFQWRKM 413 (496)
Q Consensus 385 ~~megAv~SG~~~~~AA~~il~~lg~~~~ 413 (496)
||||+.||. +||++|++.++.+..
T Consensus 580 --VeGAi~SG~---RAA~eIl~~l~~~~~ 603 (738)
T PLN02529 580 --MHGAFLSGL---REASRILHVARSQQS 603 (738)
T ss_pred --eHHHHHHHH---HHHHHHHHHHhhhhc
Confidence 999999999 999999998865543
No 17
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.86 E-value=4.2e-20 Score=195.83 Aligned_cols=293 Identities=12% Similarity=0.019 Sum_probs=187.4
Q ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCcceEEecCCchhhhHHHHHHHH
Q 010972 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 172 (496)
Q Consensus 93 ~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~l~~aL~~~l 172 (496)
.+..|+.+|++++..++.+ +.++.. ....++.+|++.++.+.+..+..+ ....+++.||++. ++++|.+.+
T Consensus 159 ~~~~s~~~~~~~~~~~~~l-~~~l~~-~~~~~g~~p~~~~~~~~l~~~~~~------~~g~~~~~gG~~~-l~~al~~~~ 229 (502)
T TIGR02734 159 LAWRSLYSKVARFFSDERL-RQAFSF-HALFLGGNPFRTPSIYALISALER------EWGVWFPRGGTGA-LVAAMAKLA 229 (502)
T ss_pred cCcCCHHHHHHhhcCCHHH-HHHhcc-cceeeccCcccchHHHHHHHHHHh------hceEEEcCCCHHH-HHHHHHHHH
Confidence 4678999999997555554 555542 333566788888876544322211 1245689999987 999999999
Q ss_pred HhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHH-HhhccccccChHHHHHHhcCC-CccEEE
Q 010972 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLA-SIDVVS 249 (496)
Q Consensus 173 ~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~-~Ll~~~~~~~~~~~~~l~~l~-~~~~~~ 249 (496)
+++|++|+++++|++|..++ +++++|++ +|+++.||.||+|+++..+. .|++....+ ....+.+++++ ..+.++
T Consensus 230 ~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s~s~~~ 306 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR-RYPAARLSRKRPSPSLFV 306 (502)
T ss_pred HHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc-cccccccccCCcCCeeeE
Confidence 99999999999999999876 56778887 46789999999999997665 566543221 11123445555 456788
Q ss_pred EEEEEc---cCCCCCCCCceeeccCC----------C----CcceEEe-cccccccCCCCCCcEEEE-EeecCC-----C
Q 010972 250 VKLWFD---KKVTVPNVSNACSGFGD----------S----LAWTFFD-LNKIYDEHKDDSATVIQA-DFYHAN-----E 305 (496)
Q Consensus 250 v~l~~~---~~~~~~~~~~~~~g~~~----------~----~~~~~~d-~s~~~~~~~~~~~~ll~~-~~~~~~-----~ 305 (496)
++++++ +++.....++.++..+. + ...++.. .+...+..++++.+.+.+ +..+.. +
T Consensus 307 ~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~ 386 (502)
T TIGR02734 307 LYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVD 386 (502)
T ss_pred EEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCC
Confidence 999998 34321112233321110 0 0011111 123333344445555433 222321 2
Q ss_pred CCCCCHHHHHHHHHHHHhHh-cCCCCCCeeEeEEEE----------eeCCCceeeCCC---CcCCCCC-CCCCCCCEEEc
Q 010972 306 LMPLKDDQVVAKAVSYLSKC-IKDFSTATVMDHKIR----------RFPKSLTHFFPG---SYKYMMR-GFTSFPNLFMA 370 (496)
Q Consensus 306 ~~~~~~eel~~~vl~~L~~~-~P~~~~~~v~~~~v~----------~~~~a~~~~~pG---~~~~rp~-~~t~i~gL~lA 370 (496)
|. ..++++.+.+++.|++. +|++++ .++...+. .+.++.++..+. ....+|. ..++++|||+|
T Consensus 387 ~~-~~k~~~~~~il~~l~~~~~p~l~~-~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~ 464 (502)
T TIGR02734 387 WS-VEGPRYRDRILAYLEERAIPGLRD-RIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLV 464 (502)
T ss_pred cH-HHHHHHHHHHHHHHHHhcCCChhH-heEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEe
Confidence 32 23677899999999998 999975 56655432 223445544322 2234554 35789999999
Q ss_pred CCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 371 GDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 371 Gd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
|++++++.| +.+|+.||. .||++|+++++
T Consensus 465 G~~~~pG~G-------v~g~~~sg~---~~a~~il~~~~ 493 (502)
T TIGR02734 465 GAGTHPGAG-------VPGVLGSAK---ATAKLMLGDLA 493 (502)
T ss_pred CCCCCCCCC-------HHHHHHHHH---HHHHHHHhhcc
Confidence 999998656 478889999 99999998653
No 18
>PLN03000 amine oxidase
Probab=99.85 E-value=6.1e-20 Score=198.14 Aligned_cols=235 Identities=14% Similarity=0.137 Sum_probs=161.7
Q ss_pred ceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhHH--Hhhcccc
Q 010972 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSI 229 (496)
Q Consensus 152 ~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~~--~Ll~~~~ 229 (496)
.....+||++. |+++|++.+ .|++|++|++|..+++ .|. |+++++++.||+||+|+|+.+++ .+...++
T Consensus 372 ~~~~v~GG~~~-LieaLa~~L-----~I~Ln~~Vt~I~~~~d--gV~-V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~Pp 442 (881)
T PLN03000 372 DHCFLPGGNGR-LVQALAENV-----PILYEKTVQTIRYGSN--GVK-VIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPE 442 (881)
T ss_pred ceEEeCCCHHH-HHHHHHhhC-----CcccCCcEEEEEECCC--eEE-EEECCcEEEeceEEEcCCHHHHhhCceeeCCC
Confidence 34567899998 888888765 4999999999999874 464 66766789999999999999998 4444444
Q ss_pred ccChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCceeeccC---C---CCcceEEecccccccCCCCCCcEEEEEee--
Q 010972 230 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---D---SLAWTFFDLNKIYDEHKDDSATVIQADFY-- 301 (496)
Q Consensus 230 ~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~---~---~~~~~~~d~s~~~~~~~~~~~~ll~~~~~-- 301 (496)
++ ....+.++++.+..+.+|.+.|++++|.. ... .+|.. . +....+++.+ + ..++.++.+...
T Consensus 443 LP-~~K~~AI~rL~~G~l~KViL~Fd~~FW~~-d~~-~FG~l~~~~~~rg~~~~f~s~s---p---~~G~pVLvafv~Gd 513 (881)
T PLN03000 443 LP-QRKLDCIKRLGFGLLNKVAMLFPYVFWST-DLD-TFGHLTEDPNYRGEFFLFYSYA---P---VAGGPLLIALVAGE 513 (881)
T ss_pred CC-HHHHHHHHcCCCcceEEEEEEeCCccccC-CCC-ceeEEecCCCCCceeEEEeCCC---C---CCCCcEEEEEecCc
Confidence 42 33346789999999999999999999842 211 23321 1 1111122211 1 013344433333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhHhcCC--CCCCeeEeEEEEeeCCC-----cee-eCCCCcC-CCCCCCCCC--CCEEEc
Q 010972 302 HANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKS-----LTH-FFPGSYK-YMMRGFTSF--PNLFMA 370 (496)
Q Consensus 302 ~~~~~~~~~~eel~~~vl~~L~~~~P~--~~~~~v~~~~v~~~~~a-----~~~-~~pG~~~-~rp~~~t~i--~gL~lA 370 (496)
.+..+..++++++++.++++|+++|+. ..-..++...+++|... .|. ..||... .......|+ ++||||
T Consensus 514 ~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFA 593 (881)
T PLN03000 514 AAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFA 593 (881)
T ss_pred hhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEe
Confidence 345677889999999999999999962 21124667778888632 222 3355422 222334564 589999
Q ss_pred CCCccC-CCCCCCCCCCCccccccCcChHHHHHHHHHHcCCCCc
Q 010972 371 GDWITT-RHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQWRKM 413 (496)
Q Consensus 371 Gd~t~~-~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg~~~~ 413 (496)
|++|+. ++|. |+||+.||. +||++|++.++.+..
T Consensus 594 GEaTs~~~~GT------VhGAieSGl---RAA~eIl~~l~~~~~ 628 (881)
T PLN03000 594 GEATTRRYPAT------MHGAFVTGL---REAANMAQSAKARGI 628 (881)
T ss_pred ehHHhCCCCee------HHHHHHHHH---HHHHHHHHHhhhccC
Confidence 999986 6677 999999999 999999999876663
No 19
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.84 E-value=9.5e-19 Score=184.80 Aligned_cols=295 Identities=14% Similarity=0.085 Sum_probs=183.8
Q ss_pred CCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCcceEEecCCchhhhHHHHHHHHH
Q 010972 94 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMR 173 (496)
Q Consensus 94 d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~l~~aL~~~l~ 173 (496)
-..|+.+|++++..++.++ .++...+......++.++++......+.. .......++.||++. ++++|.+.++
T Consensus 168 ~~~s~~~~~~~~~~~~~l~-~~l~~~~~~~~~~p~~~~p~~~~~~~~~~-----~~~~g~~~~~gG~~~-l~~~L~~~~~ 240 (493)
T TIGR02730 168 LPQNAGDIARRYIRDPGLL-KFIDIECFCWSVVPADQTPMINAGMVFSD-----RHYGGINYPKGGVGQ-IAESLVKGLE 240 (493)
T ss_pred hhccHHHHHHHhcCCHHHH-HHHHHHHHhccCCCcccchhhhHHHhhcc-----cccceEecCCChHHH-HHHHHHHHHH
Confidence 3589999999986677664 55554333222234467766555433321 112356789999987 9999999999
Q ss_pred hcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhH-HHhhccccccChHHHHHHhcCC-CccEEEE
Q 010972 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIKNSILCNREEFLKVLNLA-SIDVVSV 250 (496)
Q Consensus 174 ~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~-~~Ll~~~~~~~~~~~~~l~~l~-~~~~~~v 250 (496)
++|++|+++++|++|..++ +++.+|++ +|++++||.||+|++++.+ .+|++....+ +.....+++++ ..+.+++
T Consensus 241 ~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~s~s~~~~ 317 (493)
T TIGR02730 241 KHGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLP-KKEKNWQRNYVKSPSFLSL 317 (493)
T ss_pred HCCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccc-hhhHHHHhhccCCCceEEE
Confidence 9999999999999999876 66888888 5778999999999988765 5687654332 22223344555 3468899
Q ss_pred EEEEccCCCC--CCCCceeec-c---CCCCcceEEe-cccccccCCCCCCcEEEEEe-ecCCCCCCC-------CHHHHH
Q 010972 251 KLWFDKKVTV--PNVSNACSG-F---GDSLAWTFFD-LNKIYDEHKDDSATVIQADF-YHANELMPL-------KDDQVV 315 (496)
Q Consensus 251 ~l~~~~~~~~--~~~~~~~~g-~---~~~~~~~~~d-~s~~~~~~~~~~~~ll~~~~-~~~~~~~~~-------~~eel~ 315 (496)
+++++.+... ...+..++. . ......++.. .+...+..++++.+++.+.. .+...|.+. .++++.
T Consensus 318 ~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~ 397 (493)
T TIGR02730 318 HLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADA 397 (493)
T ss_pred EEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHH
Confidence 9999885421 111222211 0 0010111111 12233444434445543322 122233222 256688
Q ss_pred HHHHHHHhHhcCCCCCCeeEeEEEEe---------eCCCceeeCCCC---cCCC-CCCCCCCCCEEEcCCCccCCCCCCC
Q 010972 316 AKAVSYLSKCIKDFSTATVMDHKIRR---------FPKSLTHFFPGS---YKYM-MRGFTSFPNLFMAGDWITTRHGSWR 382 (496)
Q Consensus 316 ~~vl~~L~~~~P~~~~~~v~~~~v~~---------~~~a~~~~~pG~---~~~r-p~~~t~i~gL~lAGd~t~~~~G~~~ 382 (496)
+.+++.+++++|++++ .++...+.. .+++.+...+.. ...+ |..+++++|||+||++++++.|
T Consensus 398 ~~il~~l~~~~p~l~~-~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG~G--- 473 (493)
T TIGR02730 398 ERIIDRLEKIFPGLDS-AIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPGQG--- 473 (493)
T ss_pred HHHHHHHHHHCCChhh-cEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCCCC---
Confidence 9999999999999975 566544321 112222221111 1112 3456899999999999988655
Q ss_pred CCCCCccccccCcChHHHHHHHHHHcC
Q 010972 383 GLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 383 ~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
+.+|+.||. .||++|++++|
T Consensus 474 ----v~g~~~sG~---~~a~~i~~~~~ 493 (493)
T TIGR02730 474 ----LNAVAFSGF---ACAHRVAADLG 493 (493)
T ss_pred ----HHHHHHHHH---HHHHHHHhhcC
Confidence 478889999 99999998754
No 20
>PLN02676 polyamine oxidase
Probab=99.84 E-value=6.4e-20 Score=192.18 Aligned_cols=292 Identities=12% Similarity=0.077 Sum_probs=184.4
Q ss_pred ccCCccH--HHHHHHhC-CCHHHHHHHHHHHHH-hhcCCCcccccHHHHHHHHHHHHHhccCCcceEEe--cCCchhhhH
Q 010972 92 KYDSITA--RELFKQFG-CSERLYRNVIGPLVQ-VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC--RGTLREKIF 165 (496)
Q Consensus 92 ~~d~~Sv--~~~l~~~~-~~~~~~~~l~~pl~~-~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~--~GG~~~~l~ 165 (496)
..+++|+ .+++.+.. .... .....-+.. ..++.+++++|+..++.. ..+ ... +....+. +||+++ |.
T Consensus 155 ~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~~-~~~--~~~-g~~~~~~~~~~G~~~-l~ 227 (487)
T PLN02676 155 KAVDISILTAQRLFGQVPKTPL--EMVIDYYNYDYEFAEPPRVTSLKNTEPN-PTF--VDF-GEDEYFVADPRGYES-LV 227 (487)
T ss_pred CCCCccHHHHHHHHhhCCCCHH--HHHHHHHhccceeccCccccchhhcCcc-ccc--ccC-CCceEEeecCCCHHH-HH
Confidence 4577887 55666532 1111 112222221 226778899998765321 111 111 1122333 589987 88
Q ss_pred HHHHHHHHhc------CCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHHH--hhccccccChHHH
Q 010972 166 EPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSILCNREEF 236 (496)
Q Consensus 166 ~aL~~~l~~~------G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~--Ll~~~~~~~~~~~ 236 (496)
+.|++.+.+. +.+|++|++|++|..+++ .|. |++ +|+++.||+||+|+|+.++++ +...++++ ....
T Consensus 228 ~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~--gV~-V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP-~~k~ 303 (487)
T PLN02676 228 YYLAEQFLSTKSGKITDPRLKLNKVVREISYSKN--GVT-VKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP-DWKI 303 (487)
T ss_pred HHHHhhcccccccccCCCceecCCEeeEEEEcCC--cEE-EEECCCCEEEeCEEEEccChHHhccCceEEeCCCC-HHHH
Confidence 8998876432 357999999999999874 464 666 577899999999999999985 55555553 2334
Q ss_pred HHHhcCCCccEEEEEEEEccCCCCCCCCceeeccCC-C----CcceEEecccccccCCCCCCcEEEEEee--cCCCCCCC
Q 010972 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD-S----LAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPL 309 (496)
Q Consensus 237 ~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~~-~----~~~~~~d~s~~~~~~~~~~~~ll~~~~~--~~~~~~~~ 309 (496)
+.++++.+..+.++.+.|++|+|........+.... . ..|..++ . ..++..++.+.+. .+..+..+
T Consensus 304 ~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~l~~~~~g~~a~~~~~~ 376 (487)
T PLN02676 304 EAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLE-----N--EYPGSNVLFVTVTDEESRRIEQQ 376 (487)
T ss_pred HHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcc-----c--CCCCCCEEEEEechHHHHHHHhC
Confidence 567888888999999999999994211111111110 0 0111111 0 0123344433332 23456678
Q ss_pred CHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCC-----ce-eeCCCCcC-CCCCCCCCCCCEEEcCCCccC-CCCCC
Q 010972 310 KDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS-----LT-HFFPGSYK-YMMRGFTSFPNLFMAGDWITT-RHGSW 381 (496)
Q Consensus 310 ~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a-----~~-~~~pG~~~-~rp~~~t~i~gL~lAGd~t~~-~~G~~ 381 (496)
++++..+.+++.|+++||... ..++....++|... .| .+.||... ..+..+.|+++|||||++|+. ++|.
T Consensus 377 s~e~~~~~vl~~L~~~~g~~~-~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~- 454 (487)
T PLN02676 377 PDSETKAEIMEVLRKMFGPNI-PEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGY- 454 (487)
T ss_pred CHHHHHHHHHHHHHHHhCCCC-CCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccc-
Confidence 899999999999999996322 24666667777532 22 24466532 233445788999999999986 6777
Q ss_pred CCCCCCccccccCcChHHHHHHHHHHcCCC
Q 010972 382 RGLMSPDSKLPTGWSTILEMEAFLKLFQWR 411 (496)
Q Consensus 382 ~~~~~megAv~SG~~~~~AA~~il~~lg~~ 411 (496)
||||+.||. +||++|++.++..
T Consensus 455 -----~eGA~~SG~---RaA~~I~~~l~~~ 476 (487)
T PLN02676 455 -----VHGAYLAGI---DTANDLLECIKKK 476 (487)
T ss_pred -----hHHHHHHHH---HHHHHHHHHhccC
Confidence 999999999 9999999988643
No 21
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.83 E-value=7.6e-19 Score=189.89 Aligned_cols=235 Identities=15% Similarity=0.148 Sum_probs=159.0
Q ss_pred ceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhHHH--hhcccc
Q 010972 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSI 229 (496)
Q Consensus 152 ~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~~~--Ll~~~~ 229 (496)
....+.||++. |+++|++.+ .|++|++|++|...++ .|. |..+|+++.||+||+|+|+.++++ +...++
T Consensus 428 ~~~~v~GG~~~-Li~aLa~~L-----~I~ln~~V~~I~~~~d--gV~-V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~ 498 (808)
T PLN02328 428 DHCFIPGGNDT-FVRELAKDL-----PIFYERTVESIRYGVD--GVI-VYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPE 498 (808)
T ss_pred eEEEECCcHHH-HHHHHHhhC-----CcccCCeeEEEEEcCC--eEE-EEeCCeEEEcCEEEECCCHHHHhhcccccCCC
Confidence 45667899997 888888765 3999999999999874 354 555788999999999999999873 333333
Q ss_pred ccChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCceeecc---CCCC-c--ceEEecccccccCCCCCCcEEEEEee--
Q 010972 230 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF---GDSL-A--WTFFDLNKIYDEHKDDSATVIQADFY-- 301 (496)
Q Consensus 230 ~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~---~~~~-~--~~~~d~s~~~~~~~~~~~~ll~~~~~-- 301 (496)
++ ....+.++++.+..+.+|.+.|++++|.. ..+ .+|. +... + .++++.+. .+++.++.+...
T Consensus 499 LP-~~K~~AI~~l~yG~~~KV~L~F~~~FW~~-~~d-~fG~l~~d~s~rG~~~lf~s~s~------~~G~~vLvafv~G~ 569 (808)
T PLN02328 499 LP-QRKKDAIQRLGYGLLNKVALLFPYNFWGG-EID-TFGHLTEDPSMRGEFFLFYSYSS------VSGGPLLIALVAGD 569 (808)
T ss_pred CC-HHHHHHHHcCCCcceEEEEEEeCCccccC-CCC-ceEEEeecCCCCceEEEEecCCC------CCCCcEEEEEecCh
Confidence 32 33446789999999999999999999842 211 2221 1111 1 11222111 123445444333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhHhcCC--CCCCeeEeEEEEeeCCCcee------eCCCCcC-CCCCCCCCC--CCEEEc
Q 010972 302 HANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTH------FFPGSYK-YMMRGFTSF--PNLFMA 370 (496)
Q Consensus 302 ~~~~~~~~~~eel~~~vl~~L~~~~P~--~~~~~v~~~~v~~~~~a~~~------~~pG~~~-~rp~~~t~i--~gL~lA 370 (496)
.+..+..++++++++.+++.|+++|+. .....++...+++|....|. +.||... ..+....|+ ++||||
T Consensus 570 ~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FA 649 (808)
T PLN02328 570 AAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFA 649 (808)
T ss_pred hhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEE
Confidence 234566788999999999999999852 11125667788899744332 2345321 122223453 589999
Q ss_pred CCCccC-CCCCCCCCCCCccccccCcChHHHHHHHHHHcCCCCc
Q 010972 371 GDWITT-RHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQWRKM 413 (496)
Q Consensus 371 Gd~t~~-~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg~~~~ 413 (496)
|++|.. ++|. |+||+.||. +||++|++.+..+..
T Consensus 650 GEaTs~~~~Gt------VhGAi~SGl---RAA~eIl~~~~~~~~ 684 (808)
T PLN02328 650 GEATNKQYPAT------MHGAFLSGM---REAANILRVARRRSL 684 (808)
T ss_pred EhhHhCCCCeE------hHHHHHHHH---HHHHHHHHHHhhccc
Confidence 999986 6677 999999999 999999998765543
No 22
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.82 E-value=5e-19 Score=172.38 Aligned_cols=358 Identities=13% Similarity=0.146 Sum_probs=230.1
Q ss_pred cHHHHHHHhCCCCCCCccc-ce-----eec-cCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhhHHHHHhc
Q 010972 10 NIFSLVDELGIKPFTGWMK-SA-----QYS-EEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVID 82 (496)
Q Consensus 10 ~~~~Ll~eLGl~~~~~~~~-~~-----~~~-~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~~~~~~~~ 82 (496)
++++|+++||++++.+.-+ .. .+. ..|+ + .+.|..+...+.+.+-++...+. ..++..+.+
T Consensus 79 ~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~------L-----~~vP~sl~~s~~~~l~p~~k~L~-~a~l~e~fr 146 (491)
T KOG1276|consen 79 ETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGK------L-----PTVPSSLVGSLKFSLQPFGKPLL-EAFLRELFR 146 (491)
T ss_pred HHHHHHHHcCccceeeecCCCChhhhheeeccCcc------c-----ccCCcccccccccccCcccchhH-HHHHhhhcc
Confidence 6899999999997644321 11 111 1222 1 12343433322222223222222 233334333
Q ss_pred cCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhc--------------c
Q 010972 83 FDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH--------------Q 148 (496)
Q Consensus 83 ~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~--------------~ 148 (496)
...++ +..|+||.+|++|+ |++++.+++++||++|+|++|++++|+..++.-++.....+ .
T Consensus 147 ~~~~~----~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~ 221 (491)
T KOG1276|consen 147 KKVSD----PSADESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARK 221 (491)
T ss_pred ccCCC----CCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Confidence 21112 34789999999995 99999999999999999999999999998876665431100 0
Q ss_pred C---------------CcceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe---CCe-EEec
Q 010972 149 K---------------NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TYSA 209 (496)
Q Consensus 149 ~---------------~~~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G~-~~~A 209 (496)
. ....+..+||++. +++++.+.|.+.++.|.++-+|..+..... |++. +.+ ++. .+..
T Consensus 222 ~~k~~e~~~~~~~~~e~~~~~sl~gGle~-lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~-~~~~-~tl~~~~~~~~~~~ 298 (491)
T KOG1276|consen 222 RTKKAETALSAQAKKEKWTMFSLKGGLET-LPKALRKSLGEREVSISLGLKLSGNSKSRS-GNWS-LTLVDHSGTQRVVV 298 (491)
T ss_pred cCCCccchhhhhhcccccchhhhhhhHhH-hHHHHHHHhcccchhhhccccccccccccc-CCce-eEeEcCCCceeeec
Confidence 0 1123446899987 999999999888899999999999987654 4443 444 332 4566
Q ss_pred CEEEEcCChhhHHHhhccccccChHHHHHHhcCCCccEEEEEEEEccC-CCCCCC-Cceeec--c--CCCCcceEEeccc
Q 010972 210 GAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK-VTVPNV-SNACSG--F--GDSLAWTFFDLNK 283 (496)
Q Consensus 210 d~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~-~~~~~~-~~~~~g--~--~~~~~~~~~d~s~ 283 (496)
++++.++|+..+.++++... ......+.++.|.++.+|++.|..+ ...+.. ...+.. . +....+++|| |.
T Consensus 299 ~~~~~t~~~~k~a~ll~~~~---~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifd-S~ 374 (491)
T KOG1276|consen 299 SYDAATLPAVKLAKLLRGLQ---NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFD-SM 374 (491)
T ss_pred cccccccchHHhhhhccccc---hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEee-cc
Confidence 67777999999999998753 3344577899999999999999775 322211 111111 0 1123567898 44
Q ss_pred ccccCCCCCCcEEEEEee-cCC--CCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCCCC
Q 010972 284 IYDEHKDDSATVIQADFY-HAN--ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG 360 (496)
Q Consensus 284 ~~~~~~~~~~~ll~~~~~-~~~--~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~ 360 (496)
.++...+ .+.+...... ... .....+.||+++.+.++|.+.+..-. ++....++-|++++|+|..||.......
T Consensus 375 ~Fp~~~~-s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~--~P~~~~v~l~~~ciPqy~vGh~~~le~a 451 (491)
T KOG1276|consen 375 LFPDRSP-SPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISN--KPVSVNVHLWKNCIPQYTVGHDDVLEAA 451 (491)
T ss_pred cCCCCCC-CceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCC--CcccccceehhhcccceecchHHHHHHH
Confidence 5554432 2222222222 222 23345899999999999999987433 4667777899999999999986432211
Q ss_pred -----CCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHH
Q 010972 361 -----FTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFL 405 (496)
Q Consensus 361 -----~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il 405 (496)
..+-.+|++||.|..+ .+ +...|.||. .+|.+++
T Consensus 452 ~~~l~~~~g~~l~l~G~~y~G-v~-------vgdcI~sg~---~~A~~v~ 490 (491)
T KOG1276|consen 452 KSMLTDSPGLGLFLGGNHYGG-VS-------VGDCIESGR---KTAVEVI 490 (491)
T ss_pred HHHHHhCCCCceEeeccccCC-CC-------hhHHHHhhH---HHHHhhc
Confidence 1233589999999875 22 466679998 9888764
No 23
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.81 E-value=1.2e-19 Score=187.69 Aligned_cols=295 Identities=21% Similarity=0.177 Sum_probs=178.1
Q ss_pred hccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHh----ccCCcceEEecCCchhhhHH
Q 010972 91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----HQKNFDLVWCRGTLREKIFE 166 (496)
Q Consensus 91 ~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~----~~~~~~~~~~~GG~~~~l~~ 166 (496)
...+..++.+|+......+.....++.++.....+..+...++......+...... ...........|++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---- 213 (450)
T PF01593_consen 138 LEDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSL---- 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHH----
T ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhH----
Confidence 34456788888876655555544355666666555566666666333333221100 1112223334455443
Q ss_pred HHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHHHhhccccccChHHHHHHhcCCCc
Q 010972 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASI 245 (496)
Q Consensus 167 aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l~~~ 245 (496)
.+...+...|++|++|++|++|+.++ ++|. |++ +|++++||+||+|+|+..+.++...+.++ ....+.++.+.+.
T Consensus 214 ~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~-~~~~~a~~~~~~~ 289 (450)
T PF01593_consen 214 ALALAAEELGGEIRLNTPVTRIERED--GGVT-VTTEDGETIEADAVISAVPPSVLKNILLLPPLP-EDKRRAIENLPYS 289 (450)
T ss_dssp HHHHHHHHHGGGEESSEEEEEEEEES--SEEE-EEETTSSEEEESEEEE-S-HHHHHTSEEESTSH-HHHHHHHHTEEEE
T ss_pred HHHHHHhhcCceeecCCcceeccccc--cccc-cccccceEEecceeeecCchhhhhhhhhccccc-ccccccccccccC
Confidence 34444555688999999999999988 6676 555 78899999999999999999632222221 2233556788888
Q ss_pred cEEEEEEEEccCCCCCC-CCceeeccCC-CCcceEEecccccccCCCCCCcEEEEEee-c-CCCCCCCCHHHHHHHHHHH
Q 010972 246 DVVSVKLWFDKKVTVPN-VSNACSGFGD-SLAWTFFDLNKIYDEHKDDSATVIQADFY-H-ANELMPLKDDQVVAKAVSY 321 (496)
Q Consensus 246 ~~~~v~l~~~~~~~~~~-~~~~~~g~~~-~~~~~~~d~s~~~~~~~~~~~~ll~~~~~-~-~~~~~~~~~eel~~~vl~~ 321 (496)
++.++++.+++++|.+. ....+...+. ....++.+.+...+ . +++.++...+. + ...+.+.+++++.+.++++
T Consensus 290 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~ 366 (450)
T PF01593_consen 290 SVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPG-R--PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDD 366 (450)
T ss_dssp EEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTS-C--TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cceeEEEeeecccccccccccceecccCccccccccccccCcc-c--ccCCcceeeeeccccchhcccchhhhHHHHHHH
Confidence 88899999999998432 1111211122 12222333232211 1 23444433332 2 2456778999999999999
Q ss_pred HhHhcCCCCCCeeEeEEEEeeCC-Cc----ee-eCCCCc-CCCCCCCCCC-CCEEEcCCCccCCC-CCCCCCCCCccccc
Q 010972 322 LSKCIKDFSTATVMDHKIRRFPK-SL----TH-FFPGSY-KYMMRGFTSF-PNLFMAGDWITTRH-GSWRGLMSPDSKLP 392 (496)
Q Consensus 322 L~~~~P~~~~~~v~~~~v~~~~~-a~----~~-~~pG~~-~~rp~~~t~i-~gL~lAGd~t~~~~-G~~~~~~~megAv~ 392 (496)
|++++|.....++....+.+|.. .. +. +.++.. ..++...+|+ +||||||||+++.+ |. +|||+.
T Consensus 367 L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~------~~gA~~ 440 (450)
T PF01593_consen 367 LRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGG------IEGAIL 440 (450)
T ss_dssp HHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTS------HHHHHH
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCc------HHHHHH
Confidence 99999952112555666777765 22 22 222222 1234445677 69999999999743 55 999999
Q ss_pred cCcChHHHHHHHH
Q 010972 393 TGWSTILEMEAFL 405 (496)
Q Consensus 393 SG~~~~~AA~~il 405 (496)
||. +||++||
T Consensus 441 sG~---~aA~~il 450 (450)
T PF01593_consen 441 SGR---RAAEEIL 450 (450)
T ss_dssp HHH---HHHHHHH
T ss_pred HHH---HHHHHhC
Confidence 999 9999986
No 24
>PLN02568 polyamine oxidase
Probab=99.81 E-value=1.3e-18 Score=183.77 Aligned_cols=292 Identities=13% Similarity=0.083 Sum_probs=191.1
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhcc-----------C-------CcceEEe
Q 010972 95 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ-----------K-------NFDLVWC 156 (496)
Q Consensus 95 ~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~-----------~-------~~~~~~~ 156 (496)
+.|+++|++++ +++ ..+.+.+|+..+.++.++++.+...++..+..+..... . ......+
T Consensus 160 ~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i 237 (539)
T PLN02568 160 GGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI 237 (539)
T ss_pred CCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence 45999999985 554 55677788888888888888887776665554320000 0 0123457
Q ss_pred cCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHHH------hhcccc
Q 010972 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE------LIKNSI 229 (496)
Q Consensus 157 ~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~------Ll~~~~ 229 (496)
+||+++ |.++|++.+. +.+|++|++|++|..++ +.|. |++ +|+++.||+||+|+|+..+++ +...++
T Consensus 238 ~gG~~~-Li~~La~~L~--~~~I~ln~~V~~I~~~~--~~v~-V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~ 311 (539)
T PLN02568 238 AKGYLS-VIEALASVLP--PGTIQLGRKVTRIEWQD--EPVK-LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP 311 (539)
T ss_pred CCcHHH-HHHHHHhhCC--CCEEEeCCeEEEEEEeC--CeEE-EEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC
Confidence 799987 8888888773 46899999999999887 4464 666 677899999999999999985 334444
Q ss_pred ccChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCceeeccCCCCcceEEecc-----------------cccccCCCCC
Q 010972 230 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLN-----------------KIYDEHKDDS 292 (496)
Q Consensus 230 ~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~~~~~~~~~d~s-----------------~~~~~~~~~~ 292 (496)
++ ....+.++.+.+..+.++++.|++++|. .+.. +..+. ...++++.+ ...+ . ..+
T Consensus 312 LP-~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~-~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 384 (539)
T PLN02568 312 LP-DFKTDAISRLGFGVVNKLFVELSPRPDG-SPED-VAKFP--FLQMAFHRSDSEARHDKIPWWMRRTASICP-I-HKN 384 (539)
T ss_pred CC-HHHHHHHHhcCCceeeEEEEEecCCCCC-cccc-ccccc--ceeeeecccchhhhcccccchhhccccccc-c-CCC
Confidence 42 2335678899988999999999999873 2110 10000 001111100 0001 0 012
Q ss_pred CcEEEEEee--cCCCCCCCCHHHHHHHHHHHHhHhcCCCC---------------------CCeeEeEEEEeeCC-----
Q 010972 293 ATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFS---------------------TATVMDHKIRRFPK----- 344 (496)
Q Consensus 293 ~~ll~~~~~--~~~~~~~~~~eel~~~vl~~L~~~~P~~~---------------------~~~v~~~~v~~~~~----- 344 (496)
..++.+.+. .+..+..++++++++.+++.|+++|+.-. ..+++.+.+++|..
T Consensus 385 ~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~ 464 (539)
T PLN02568 385 SSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFL 464 (539)
T ss_pred CCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccC
Confidence 334444333 24556778999999999999999996321 02466677778852
Q ss_pred Cceee-CCCCcC-CCCCCCCCC-------------CCEEEcCCCccC-CCCCCCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 345 SLTHF-FPGSYK-YMMRGFTSF-------------PNLFMAGDWITT-RHGSWRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 345 a~~~~-~pG~~~-~rp~~~t~i-------------~gL~lAGd~t~~-~~G~~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
+.|.+ .||... .+..+..|+ ++|||||..|+. +.|. |+||+.||. +||++|++..
T Consensus 465 GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~T------v~GA~~SG~---RaA~~i~~~~ 535 (539)
T PLN02568 465 GSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYST------THGAYFSGL---REANRLLQHY 535 (539)
T ss_pred CccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccch------HHHHHHHHH---HHHHHHHHHh
Confidence 23333 356432 111223343 379999999987 5565 999999999 9999999876
Q ss_pred CC
Q 010972 409 QW 410 (496)
Q Consensus 409 g~ 410 (496)
++
T Consensus 536 ~~ 537 (539)
T PLN02568 536 KC 537 (539)
T ss_pred cc
Confidence 53
No 25
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.81 E-value=3.5e-19 Score=176.56 Aligned_cols=233 Identities=14% Similarity=0.100 Sum_probs=161.8
Q ss_pred EecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCC-eEEecCEEEEcCChhhHHHhhccccccCh
Q 010972 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNR 233 (496)
Q Consensus 155 ~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G-~~~~Ad~VV~A~p~~~~~~Ll~~~~~~~~ 233 (496)
.+.|||+. |++++++.+ |..|+++++|++|.++++ +|+ |+++. +++.+|.||||+|+.++.++-.++.+ ..
T Consensus 203 ~~~GGmd~-la~Afa~ql---~~~I~~~~~V~rI~q~~~--gV~-Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l-~~ 274 (450)
T COG1231 203 QRLGGMDQ-LAEAFAKQL---GTRILLNEPVRRIDQDGD--GVT-VTADDVGQYVADYVLVTIPLAILGQIDFAPLL-PA 274 (450)
T ss_pred ccCccHHH-HHHHHHHHh---hceEEecCceeeEEEcCC--eEE-EEeCCcceEEecEEEEecCHHHHhhcccCCCC-CH
Confidence 34499997 888888665 789999999999999884 475 77765 78999999999999999988766543 24
Q ss_pred HHHHHHhcCCCccEEEEEEEEccCCCCCCC-CceeeccCCCCcceEEecccccccCCCCCCcEEEEEee---cCCCCCCC
Q 010972 234 EEFLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPL 309 (496)
Q Consensus 234 ~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~d~s~~~~~~~~~~~~ll~~~~~---~~~~~~~~ 309 (496)
+..+.+..+.|.++.++.+.|++|+|.... .++..-.|..+ +.+..-+.. .. .+..++...+. .+..|..+
T Consensus 275 ~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~-~~i~~~s~~---~~-~G~gVl~g~~~~g~~A~~~~~~ 349 (450)
T COG1231 275 EYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGL-GFISYPSAP---FA-DGPGVLLGSYAFGDDALVIDAL 349 (450)
T ss_pred HHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCc-ceEecCccc---cC-CCceEEEeeeeccccceeEecC
Confidence 445666778899999999999999995432 11111012222 222222221 11 23334433222 45678899
Q ss_pred CHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCc------eeeCCCC-cCCCCCCCCCCCCEEEcCCCccC-CCCCC
Q 010972 310 KDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL------THFFPGS-YKYMMRGFTSFPNLFMAGDWITT-RHGSW 381 (496)
Q Consensus 310 ~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~------~~~~pG~-~~~rp~~~t~i~gL~lAGd~t~~-~~G~~ 381 (496)
+++++++.++..+.++||+.....+.....++|.... ..+.||. ..+.|.+..|.++|+|||.+..+ ++|.
T Consensus 350 ~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw- 428 (450)
T COG1231 350 PEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGW- 428 (450)
T ss_pred CHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccch-
Confidence 9999999999999999995433234333556665322 2244554 23345556788999999955554 7777
Q ss_pred CCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 382 RGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 382 ~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
|||||+||+ +||.+|.+.+.
T Consensus 429 -----~eGAi~Sg~---~AA~ei~~~l~ 448 (450)
T COG1231 429 -----LEGAIRSGQ---RAAAEIHALLS 448 (450)
T ss_pred -----hHHHHHHHH---HHHHHHHHhhc
Confidence 999999999 99999998763
No 26
>PLN02976 amine oxidase
Probab=99.78 E-value=2.6e-18 Score=190.19 Aligned_cols=302 Identities=16% Similarity=0.140 Sum_probs=187.8
Q ss_pred CCCcccccHHHHHHHHHHHHHhccCCcceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecC--------CCCe
Q 010972 125 FAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--------ERCC 196 (496)
Q Consensus 125 ~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~--------~~g~ 196 (496)
+.+++++|+.++..- ..+ ... +.....++||++. |+++|++.+ .|++|++|++|.+.+ +++.
T Consensus 904 aa~L~eVSl~~~~qd-~~y--~~f-gG~~~rIkGGYqq-LIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dG 973 (1713)
T PLN02976 904 AALLKEVSLPYWNQD-DVY--GGF-GGAHCMIKGGYSN-VVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKK 973 (1713)
T ss_pred cCCHHHhhhhhhhcc-ccc--ccC-CCceEEeCCCHHH-HHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCc
Confidence 578888887643210 001 111 1234567899997 888887654 599999999999842 1133
Q ss_pred EEEEEe-CCeEEecCEEEEcCChhhHH--HhhccccccChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCceeeccCC-
Q 010972 197 ISDVVC-GKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD- 272 (496)
Q Consensus 197 v~~V~~-~G~~~~Ad~VV~A~p~~~~~--~Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~~- 272 (496)
|. |++ +|+++.||+||+|+|+.+++ .+...++++ ....+.++.+.+..+.++++.|++++|.. ..+ ++|...
T Consensus 974 Vt-VtTsDGetftADaVIVTVPLGVLKag~I~FsPPLP-e~KqaAIqrLgfG~lnKV~LeFdrpFW~~-d~d-~FG~s~e 1049 (1713)
T PLN02976 974 VK-VSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLP-DWKYSSIQRLGFGVLNKVVLEFPEVFWDD-SVD-YFGATAE 1049 (1713)
T ss_pred EE-EEECCCCEEEeceEEEeCCHHHhhhcccccCCccc-HHHHHHHHhhccccceEEEEEeCCccccC-CCC-ccccccc
Confidence 54 666 67789999999999999987 355555553 22335678899989999999999999842 212 333211
Q ss_pred --CCc---ceEEecccccccCCCCCCcEEEEEe-e-cCCCCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCC
Q 010972 273 --SLA---WTFFDLNKIYDEHKDDSATVIQADF-Y-HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS 345 (496)
Q Consensus 273 --~~~---~~~~d~s~~~~~~~~~~~~ll~~~~-~-~~~~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a 345 (496)
+.. +.+|+.. .+.+..++...+ . .+..+..++++++++.+++.|+++||......++.+.+++|...
T Consensus 1050 dtdlrG~~~~~wnlr------~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976 1050 ETDLRGQCFMFWNVK------KTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred cCCCCceEEEeccCC------CCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCC
Confidence 111 1122211 111233443333 2 23456678999999999999999998532125777788888633
Q ss_pred -----cee-eCCCCcC-CCCCCCCCCCC-EEEcCCCccC-CCCCCCCCCCCccccccCcChHHHHHHHHHHcCCCCccc-
Q 010972 346 -----LTH-FFPGSYK-YMMRGFTSFPN-LFMAGDWITT-RHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQWRKMNL- 415 (496)
Q Consensus 346 -----~~~-~~pG~~~-~rp~~~t~i~g-L~lAGd~t~~-~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg~~~~~~- 415 (496)
.|. ..||... .+..+..|+.| |||||++|+. ++|. |+||+.||+ +||++|+..++.-..-.
T Consensus 1124 PySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGT------VHGAIeSG~---RAA~eIL~~L~~G~~~~~ 1194 (1713)
T PLN02976 1124 PFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDT------VGGAMMSGL---REAVRIIDILNTGNDYTA 1194 (1713)
T ss_pred CCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcch------HHHHHHHHH---HHHHHHHHHHHccCcccc
Confidence 223 2356432 22234467766 9999999987 6676 999999999 99999999884211100
Q ss_pred ---cc----CCCCCccchhHhhc--------ccceeecccccccccchHHHHHHh
Q 010972 416 ---TL----KHCAPSTEDLMKSE--------RSFLYQITSFSEPIIEYEDFLRQY 455 (496)
Q Consensus 416 ---~~----~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 455 (496)
.. ++-+.+.-+++.+. -+-||....-..||+..|.+|+.-
T Consensus 1195 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 (1713)
T PLN02976 1195 EVEALETAQRHSESERDEVRDITKRLEAVELSNVLYKNSLDADPILTREALLQEM 1249 (1713)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhhcccccchhhhhcccccccchhHHHHHHHH
Confidence 00 11122222222221 244666666667888888887543
No 27
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.71 E-value=3.6e-15 Score=146.17 Aligned_cols=241 Identities=15% Similarity=0.127 Sum_probs=149.6
Q ss_pred CcceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhhcc
Q 010972 150 NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIKN 227 (496)
Q Consensus 150 ~~~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll~~ 227 (496)
.....||.|||++ +.+++++.+++.|++|.+++.|++|..++ |++.||++ +|+++.++.||+++.++. ..+|++.
T Consensus 253 ~g~~~Yp~GG~Ga-vs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~ 329 (561)
T KOG4254|consen 253 KGGWGYPRGGMGA-VSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPG 329 (561)
T ss_pred CCcccCCCCChhH-HHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCC
Confidence 4567899999998 99999999999999999999999999988 88999999 789999999999777765 5599998
Q ss_pred ccccChHHHHHHhcCCCc-cEE----EEEEEEccCCCCCCCCceee---cc-----------------CCCCcceEEe-c
Q 010972 228 SILCNREEFLKVLNLASI-DVV----SVKLWFDKKVTVPNVSNACS---GF-----------------GDSLAWTFFD-L 281 (496)
Q Consensus 228 ~~~~~~~~~~~l~~l~~~-~~~----~v~l~~~~~~~~~~~~~~~~---g~-----------------~~~~~~~~~d-~ 281 (496)
..++. .+ .++++.+. ++. ..++..+..-..+-++..+. .. +.....+.+. -
T Consensus 330 e~LPe--ef-~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siP 406 (561)
T KOG4254|consen 330 EALPE--EF-VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIP 406 (561)
T ss_pred ccCCc--hh-hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecc
Confidence 76632 22 34444322 222 12333221111111111110 00 0011111111 1
Q ss_pred ccccccCCCCCCcEEEEEe-ecCCCCCCC-------CHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEee---------C-
Q 010972 282 NKIYDEHKDDSATVIQADF-YHANELMPL-------KDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF---------P- 343 (496)
Q Consensus 282 s~~~~~~~~~~~~ll~~~~-~~~~~~~~~-------~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~---------~- 343 (496)
|.+.+..++|+++++.... +....|.+. -+++.+++++..+++++|++.. .++.+.+-.. +
T Consensus 407 S~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss-sv~~~dvgTP~t~qr~l~~~~ 485 (561)
T KOG4254|consen 407 SSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS-SVESYDVGTPPTHQRFLGRPG 485 (561)
T ss_pred cccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccc-eEEEEecCCCchhhHHhcCCC
Confidence 3344556667777765422 222334332 3578899999999999999986 4655443221 1
Q ss_pred CCceeeCCCCc---CCCCCC-----CCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 344 KSLTHFFPGSY---KYMMRG-----FTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 344 ~a~~~~~pG~~---~~rp~~-----~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
+.++...-+.. ..+|.. ++|++|||+||+.++++.|. | +| .|. .+|...+...+
T Consensus 486 Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV------~-a~--aG~---~~A~~a~~~~~ 547 (561)
T KOG4254|consen 486 GNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGV------M-AA--AGR---LAAHSAILDRK 547 (561)
T ss_pred CcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCCCc------c-cc--chh---HHHHHHhhhhh
Confidence 22222111221 124443 68999999999999986555 3 22 266 99988887654
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.61 E-value=4e-14 Score=134.78 Aligned_cols=233 Identities=16% Similarity=0.076 Sum_probs=149.8
Q ss_pred CccccC-CCccHHHHHHHhCCCCCCCcccceeecc-CCccccccccccCCCCCCCccccc--ccccCCCC-hhhhhhhhh
Q 010972 1 MQGFWY-PFRNIFSLVDELGIKPFTGWMKSAQYSE-EGLEVEFPIFQDLNQLPTPLGTLF--YTQFSRLP-LVDRLTSLP 75 (496)
Q Consensus 1 ~H~~~~-~y~~~~~Ll~eLGl~~~~~~~~~~~~~~-~G~~~~~~~~~~~~~l~~P~~~~~--~l~~~~ls-~~~kl~~~~ 75 (496)
||+... +|+++.+|+++||++.........+... +|.. |+. .+.+.++.... +++..... +.+++++-+
T Consensus 64 fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v~~d~gglE-----y~g-~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r 137 (447)
T COG2907 64 FIVYNERTYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLE-----YSG-LTGLAGLLAQKRNLLRPRFPCMLAEILRFYR 137 (447)
T ss_pred eEEecCCCcchHHHHHHHcCCCCcccceeEEEEecCCcee-----ecc-CCCccchhhccccccchhHHHHHHHHHHHhh
Confidence 456666 8999999999999997655444333322 2332 332 11122222211 11211111 122222211
Q ss_pred HHHHHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccC----Cc
Q 010972 76 LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK----NF 151 (496)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~----~~ 151 (496)
. +..+.+.....++|+++||+++++++.+++.++.|+..++|+++..+++..-+..+++.+ ..+.- +.
T Consensus 138 ~-------~~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~-~nhGll~l~~r 209 (447)
T COG2907 138 S-------DLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFT-DNHGLLYLPKR 209 (447)
T ss_pred h-------hccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHH-hccCceecCCC
Confidence 0 112233345678999999999999999999999999999999999999987766666543 11110 11
Q ss_pred ceE-EecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhHHHhhccccc
Q 010972 152 DLV-WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSIL 230 (496)
Q Consensus 152 ~~~-~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~~~Ll~~~~~ 230 (496)
..| ...||... ..++|...+ +++|+++++|.+|.+-.| | |.-+..+|++-.+|+||.|+.+.++..||+++.
T Consensus 210 p~wrtV~ggS~~-yvq~laa~~---~~~i~t~~~V~~l~rlPd-G-v~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s- 282 (447)
T COG2907 210 PTWRTVAGGSRA-YVQRLAADI---RGRIETRTPVCRLRRLPD-G-VVLVNADGESRRFDAVVIATHPDQALALLDEPS- 282 (447)
T ss_pred CceeEcccchHH-HHHHHhccc---cceeecCCceeeeeeCCC-c-eEEecCCCCccccceeeeecChHHHHHhcCCCC-
Confidence 122 24577765 666666444 678999999999999876 4 543444688889999999999999999998864
Q ss_pred cChHHHHHHhcCCCccEEEEEEEEccC
Q 010972 231 CNREEFLKVLNLASIDVVSVKLWFDKK 257 (496)
Q Consensus 231 ~~~~~~~~l~~l~~~~~~~v~l~~~~~ 257 (496)
+...+.+..+.|...-.| +.-|..
T Consensus 283 --p~e~qll~a~~Ys~n~aV-lhtd~~ 306 (447)
T COG2907 283 --PEERQLLGALRYSANTAV-LHTDAS 306 (447)
T ss_pred --HHHHHHHHhhhhhhceeE-Eeeccc
Confidence 455566788887765443 344443
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.61 E-value=3e-14 Score=149.69 Aligned_cols=286 Identities=13% Similarity=0.057 Sum_probs=158.2
Q ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCcceEEecCCchhhhHHHHHHHH
Q 010972 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 172 (496)
Q Consensus 93 ~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~l~~aL~~~l 172 (496)
....++.++++.. +..+.++.++.....-.. .+|.+.++ +..++... ....+..+++|||+. |+++|++.+
T Consensus 164 ~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a--~~~~~~~~----~~~~G~~~p~GG~~a-l~~aL~~~~ 234 (487)
T COG1233 164 FSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPA--LYLLLSHL----GLSGGVFYPRGGMGA-LVDALAELA 234 (487)
T ss_pred HhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhH--HHHHHHHh----cccCCeeeeeCCHHH-HHHHHHHHH
Confidence 3567889999987 654444555554332223 56777662 22222221 233467899999998 999999999
Q ss_pred HhcCCEEEcCceeeeEEecCCCCeEEEEEeC-CeEEecCEEEEcCChhhHHHhhccccccChHHHHHHhcC-CCccEEEE
Q 010972 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL-ASIDVVSV 250 (496)
Q Consensus 173 ~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~-G~~~~Ad~VV~A~p~~~~~~Ll~~~~~~~~~~~~~l~~l-~~~~~~~v 250 (496)
+++|++|+++++|++|..++ |+.+++++. |+.+++|.||++..+.....+.+.... ....... +..+.+..
T Consensus 235 ~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~al~~ 307 (487)
T COG1233 235 REHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGEARR-----PRYRGSYLKSLSALSL 307 (487)
T ss_pred HHcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhhhhh-----hccccchhhhhHHHHh
Confidence 99999999999999999988 554556664 558899999999998555555543210 0011111 12334455
Q ss_pred EEEEccCCCCCCCCceeeccCC--CC--c---------ce-EEecccccccCCCCCCcEEEEEee--cCCCCCCCCHHHH
Q 010972 251 KLWFDKKVTVPNVSNACSGFGD--SL--A---------WT-FFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQV 314 (496)
Q Consensus 251 ~l~~~~~~~~~~~~~~~~g~~~--~~--~---------~~-~~d~s~~~~~~~~~~~~ll~~~~~--~~~~~~~~~~eel 314 (496)
++.++........++.++..+. .+ . +. +...+...|..++++.+.+...+. +...+.+..++++
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~~~~~~~~ 387 (487)
T COG1233 308 YLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKESL 387 (487)
T ss_pred ccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCChHHHHHHH
Confidence 6666653111111222221111 00 0 11 112233334444434331111222 2122223345555
Q ss_pred HHHHHHHHhHhcCCCCCCeeEeEEEEee----------CCCceeeC---CCCcCCCCCC-CCCCCCEEEcCCCccCCCCC
Q 010972 315 VAKAVSYLSKCIKDFSTATVMDHKIRRF----------PKSLTHFF---PGSYKYMMRG-FTSFPNLFMAGDWITTRHGS 380 (496)
Q Consensus 315 ~~~vl~~L~~~~P~~~~~~v~~~~v~~~----------~~a~~~~~---pG~~~~rp~~-~t~i~gL~lAGd~t~~~~G~ 380 (496)
.+. ...++++.|++++ .++...+... .+.++... ......||.. .+|++|||+||++|+++.|.
T Consensus 388 ~~~-~~~~~~~~p~~~~-~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG~Gv 465 (487)
T COG1233 388 ADA-IDALEELAPGLRD-RIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPGGGV 465 (487)
T ss_pred HHH-HHHHhhcCCCccc-ceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCCCCc
Confidence 555 6678999999985 5554443211 11112111 1122345544 48999999999999985443
Q ss_pred CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 381 WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 381 ~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
.+ ++|. .+|..++...
T Consensus 466 -------~g--~~g~---~~a~~~~~~~ 481 (487)
T COG1233 466 -------PG--VPGS---AAAVALLIDL 481 (487)
T ss_pred -------ch--hhhh---HHHHHhhhcc
Confidence 11 3444 6666665543
No 30
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=3.4e-14 Score=147.77 Aligned_cols=232 Identities=19% Similarity=0.193 Sum_probs=155.8
Q ss_pred EEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHHH--hhccccc
Q 010972 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSIL 230 (496)
Q Consensus 154 ~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~--Ll~~~~~ 230 (496)
....+|+.. +...++. |.+|+++.+|.+|.+.++ +.+ .++. ++..+.+|.||+++|..++.. +...|++
T Consensus 212 ~~~~~G~~~-v~~~la~-----~l~I~~~~~v~~i~~~~~-~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L 283 (501)
T KOG0029|consen 212 LLMKGGYEP-VVNSLAE-----GLDIHLNKRVRKIKYGDD-GAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPL 283 (501)
T ss_pred hHhhCCccH-HHhhcCC-----CcceeeceeeEEEEEecC-Cce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCCC
Confidence 345678776 5555543 889999999999999876 432 2343 444599999999999999876 5555554
Q ss_pred cChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCceeeccCC---CCcc--eEEecccccccCCCCCCcEEEEEee-cCC
Q 010972 231 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD---SLAW--TFFDLNKIYDEHKDDSATVIQADFY-HAN 304 (496)
Q Consensus 231 ~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~~---~~~~--~~~d~s~~~~~~~~~~~~ll~~~~~-~~~ 304 (496)
+ ......++++....+.++.+.|++.+|.+ .. ..++... ...+ .+++..... ....++..+.. .+.
T Consensus 284 p-~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~-~~-d~fg~~~~~~~~~~~~~f~~~~~~~-----~~~~l~~~~~~~~a~ 355 (501)
T KOG0029|consen 284 P-RWKQEAIDRLGFGLVNKVILEFPRVFWDQ-DI-DFFGIVPETSVLRGLFTFYDCKPVA-----GHPVLMSVVVGEAAE 355 (501)
T ss_pred c-HHHHHHHHhcCCCceeEEEEEeccccCCC-Cc-CeEEEccccccccchhhhhhcCccC-----CCCeEEEEehhhhhH
Confidence 2 34456789999888999999999999942 22 2333221 1111 123322211 11223332222 345
Q ss_pred CCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeCCCc-----e-eeCCCCcCCC-CCCCCCCCC-EEEcCCCccC
Q 010972 305 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL-----T-HFFPGSYKYM-MRGFTSFPN-LFMAGDWITT 376 (496)
Q Consensus 305 ~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~~a~-----~-~~~pG~~~~r-p~~~t~i~g-L~lAGd~t~~ 376 (496)
.+..++++++++.++..|+++|+......++++.+.+|.... | ...++..... .....|+.| +||||.+|..
T Consensus 356 ~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~ 435 (501)
T KOG0029|consen 356 RVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSR 435 (501)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcc
Confidence 677889999999999999999994222357788888886322 2 1222221111 233567878 9999999986
Q ss_pred -CCCCCCCCCCCccccccCcChHHHHHHHHHHcCC
Q 010972 377 -RHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQW 410 (496)
Q Consensus 377 -~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg~ 410 (496)
.+|. |+||..||. +||..|+..+..
T Consensus 436 ~~~~t------m~GA~~sG~---~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 436 KYPGT------MHGAYLSGL---RAASDILDSLIE 461 (501)
T ss_pred cCCCc------hHHHHHhhH---HHHHHHHHHHHh
Confidence 5666 999999999 999999998863
No 31
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.57 E-value=3.1e-15 Score=137.90 Aligned_cols=221 Identities=13% Similarity=0.086 Sum_probs=147.2
Q ss_pred CCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CC-eEEecCEEEEcCChhhHHHhhcccccc-ChH
Q 010972 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGISTLQELIKNSILC-NRE 234 (496)
Q Consensus 158 GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G-~~~~Ad~VV~A~p~~~~~~Ll~~~~~~-~~~ 234 (496)
-||+. |++.|+. ..+|+++++|++|...+ +.+ .+.+ +| +...+|.||+|+|.+++..||...... ...
T Consensus 105 pgmsa-lak~LAt-----dL~V~~~~rVt~v~~~~--~~W-~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~ 175 (331)
T COG3380 105 PGMSA-LAKFLAT-----DLTVVLETRVTEVARTD--NDW-TLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAA 175 (331)
T ss_pred cchHH-HHHHHhc-----cchhhhhhhhhhheecC--Cee-EEEecCCCcccccceEEEecCCCcchhhcCcccccchHH
Confidence 46665 5544432 56899999999999986 434 5888 44 467999999999999999998642111 123
Q ss_pred HHHHHhcCCCccEEEEEEEEccCCCCCCCCceeeccCCCCcceEEecccccccCCCCCCcEEEEEee--cCCCCCCCCHH
Q 010972 235 EFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDD 312 (496)
Q Consensus 235 ~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~g~~~~~~~~~~d~s~~~~~~~~~~~~ll~~~~~--~~~~~~~~~~e 312 (496)
.++.+..+.|.|++++.++|..+...|.+. ++--+.++.|.--|.++ +... |.+..+.+..+ .++...+.++|
T Consensus 176 l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G--~~vdg~~laWla~d~sK--~g~~-p~~~~~vvqasp~wSr~h~~~~~e 250 (331)
T COG3380 176 LRAALADVVYAPCWSAVLGYPQPLDRPWPG--NFVDGHPLAWLARDASK--KGHV-PDGEIWVVQASPDWSREHLDHPAE 250 (331)
T ss_pred HHHhhccceehhHHHHHhcCCccCCCCCCC--cccCCCeeeeeeccccC--CCCC-CcCceEEEEeCchHHHHhhcCCHH
Confidence 456778888999999999999887754432 33223455554333232 2222 33443333333 23445566788
Q ss_pred HHHHHHHHHHhHhcC-CCCCCeeEeEEEEeeCCCceeeCCCCcCCCCCCCCCCCCEEEcCCCccCCCCCCCCCCCCcccc
Q 010972 313 QVVAKAVSYLSKCIK-DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWRGLMSPDSKL 391 (496)
Q Consensus 313 el~~~vl~~L~~~~P-~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~~t~i~gL~lAGd~t~~~~G~~~~~~~megAv 391 (496)
+.+..+......+.+ .+. .+.+...++|+.+.|....+.... ...+-.+||+||||+++ |- +|||.
T Consensus 251 ~~i~~l~aA~~~~~~~~~~--~p~~s~~H~WrYA~P~~~~~~~~L---~ad~~~~l~~cGDwc~G--gr------VEgA~ 317 (331)
T COG3380 251 QVIVALRAAAQELDGDRLP--EPDWSDAHRWRYAIPNDAVAGPPL---DADRELPLYACGDWCAG--GR------VEGAV 317 (331)
T ss_pred HHHHHHHHhhhhccCCCCC--cchHHHhhccccccccccccCCcc---ccCCCCceeeecccccC--cc------hhHHH
Confidence 888777777777775 343 577778899998887654433211 11233579999999875 44 89999
Q ss_pred ccCcChHHHHHHHHHHc
Q 010972 392 PTGWSTILEMEAFLKLF 408 (496)
Q Consensus 392 ~SG~~~~~AA~~il~~l 408 (496)
+||. .+|++|++.|
T Consensus 318 LSGl---AaA~~i~~~L 331 (331)
T COG3380 318 LSGL---AAADHILNGL 331 (331)
T ss_pred hccH---HHHHHHHhcC
Confidence 9999 9999998753
No 32
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.45 E-value=6.7e-13 Score=132.03 Aligned_cols=242 Identities=17% Similarity=0.209 Sum_probs=148.0
Q ss_pred eEEecCCchhhhHHHHHHHHHh----cC--CEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHHH--
Q 010972 153 LVWCRGTLREKIFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE-- 223 (496)
Q Consensus 153 ~~~~~GG~~~~l~~aL~~~l~~----~G--~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~-- 223 (496)
..+.+-|... +.+-|++.+.+ .| .+|++|++|.+|..+++ +.|. |++ ||+.+.||+||+|++..++++
T Consensus 215 ~~~~~kGy~~-iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~-~~v~-l~c~dg~v~~adhVIvTvsLGvLk~~h 291 (498)
T KOG0685|consen 215 LIWNKKGYKR-ILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNT-GEVK-LRCSDGEVFHADHVIVTVSLGVLKEQH 291 (498)
T ss_pred heechhHHHH-HHHHHhccCCCcchhcCchhhhcccccceeeccCCC-CcEE-EEEeCCcEEeccEEEEEeechhhhhhh
Confidence 3455566665 66667665432 23 57778899999999876 5675 777 799999999999999999886
Q ss_pred --hhccccccChHHHHHHhcCCCccEEEEEEEEccCCCCCCCCceee--ccCCC---C----cceEEecccccccCCCCC
Q 010972 224 --LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACS--GFGDS---L----AWTFFDLNKIYDEHKDDS 292 (496)
Q Consensus 224 --Ll~~~~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~~~--g~~~~---~----~~~~~d~s~~~~~~~~~~ 292 (496)
|.. |+++ ....++|+++..+.+-+++|-|++|+|. ...+.+. -.+.. + .++.-+.-...+-. ..
T Consensus 292 ~~lF~-P~LP-~~K~~AIe~lgfGtv~KiFLE~E~pfwp-~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~--~~ 366 (498)
T KOG0685|consen 292 HKLFV-PPLP-AEKQRAIERLGFGTVNKIFLEFEEPFWP-SDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVS--WA 366 (498)
T ss_pred hhhcC-CCCC-HHHHHHHHhccCCccceEEEEccCCCCC-CCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcC--cc
Confidence 433 3342 2334688999988999999999999983 3322221 11111 0 00010100000100 12
Q ss_pred CcEEEEEee--cCCCCCCCCHHHHHHHHHHHHhHhcCCCCCCeeEeEEEEeeC-----CCceeeC-CCCcC--------C
Q 010972 293 ATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFP-----KSLTHFF-PGSYK--------Y 356 (496)
Q Consensus 293 ~~ll~~~~~--~~~~~~~~~~eel~~~vl~~L~~~~P~~~~~~v~~~~v~~~~-----~a~~~~~-pG~~~--------~ 356 (496)
..++...+. .+..+..+++|++.+.+...|++++++..-.+|....-..|. ++.|.|. +|... .
T Consensus 367 ~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p 446 (498)
T KOG0685|consen 367 PNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALP 446 (498)
T ss_pred hhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhcc
Confidence 245444443 244567889999999999999999865432233322223342 3445543 33221 1
Q ss_pred CCC-CCCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcCC
Q 010972 357 MMR-GFTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQW 410 (496)
Q Consensus 357 rp~-~~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg~ 410 (496)
.|. ..++-|.+.|||.+|+..+ +.+.-||++||+ +.|+++++....
T Consensus 447 ~p~~~~~~~p~I~FAGEaThr~~-----YsTthGA~~SG~---REA~RL~~~y~~ 493 (498)
T KOG0685|consen 447 LPLTLVTGRPQILFAGEATHRTF-----YSTTHGAVLSGW---READRLLEHYES 493 (498)
T ss_pred CCccccCCCceEEEccccccccc-----eehhhhhHHhhH---HHHHHHHHHHHh
Confidence 121 1234468999999999511 112677789999 999999985543
No 33
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.44 E-value=3.7e-12 Score=131.29 Aligned_cols=196 Identities=13% Similarity=0.182 Sum_probs=132.3
Q ss_pred CccHHHHHHHhCCCCCCCccc-ceeec--cCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhhHHHHHhccC
Q 010972 8 FRNIFSLVDELGIKPFTGWMK-SAQYS--EEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD 84 (496)
Q Consensus 8 y~~~~~Ll~eLGl~~~~~~~~-~~~~~--~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~~~~~~~~~~ 84 (496)
.-.+..++.+.|+.....+.. ...|. .+|+. ...|.+....++.+++++.+|.++.+++..+.+.+
T Consensus 83 ~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~-----------~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~ 151 (443)
T PTZ00363 83 SGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKI-----------HKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYD 151 (443)
T ss_pred CChHHHHHhhcCccceeeeEEeceEEEEecCCeE-----------EECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhc
Confidence 356778888899987766653 22232 34542 12466666678999999999999988776665544
Q ss_pred C-Chhhhhc--cCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHH--HhccCCcceEEecCC
Q 010972 85 N-TDVAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGT 159 (496)
Q Consensus 85 ~-~~~~~~~--~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~--~~~~~~~~~~~~~GG 159 (496)
. +...+.. ++++|+.+|++++++++..++ ++..++......+..+.++...+..+..+. ++..+...+.||.||
T Consensus 152 ~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG 230 (443)
T PTZ00363 152 ENDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYG 230 (443)
T ss_pred cCChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCC
Confidence 2 1223333 457999999999999998764 334343333222222223333333232221 122233456889999
Q ss_pred chhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCC
Q 010972 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVG 217 (496)
Q Consensus 160 ~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p 217 (496)
+++ |++++++.++..|+++++|++|++|+.+++ |++++|++ +|+++.|+.||+...
T Consensus 231 ~g~-L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 231 LGG-LPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred HHH-HHHHHHHHHHHcCcEEEcCCeEEEEEEcCC-CeEEEEEECCCcEEECCEEEECcc
Confidence 998 999999999999999999999999998764 56778888 688999999999544
No 34
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.91 E-value=5.5e-08 Score=99.38 Aligned_cols=196 Identities=16% Similarity=0.222 Sum_probs=129.0
Q ss_pred cCCCccHHHHHHHhCCCCCCCccc-ceeec-cCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhhHHHHHhc
Q 010972 5 WYPFRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVID 82 (496)
Q Consensus 5 ~~~y~~~~~Ll~eLGl~~~~~~~~-~~~~~-~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~~~~~~~~ 82 (496)
+-+.-.+.++|-+-|+...+.|.. ...|. .+|+ +. ..|-+-...++++.+++.+|-++.+++.-...
T Consensus 81 l~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~------l~-----kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~ 149 (438)
T PF00996_consen 81 LYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGK------LH-----KVPCSREDVFKSKLLSLFEKRRLMKFLKFVAN 149 (438)
T ss_dssp EETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTE------EE-----E--SSHHHHHC-TTS-HHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHhCCcccceEEEEcceeEEEeCCE------Ee-----eCCCCHHHhhcCCCccHHHHHHHHHHHHHHhh
Confidence 345567888888888887766664 22232 3454 22 24555556889999999999999887766665
Q ss_pred cCCC-hhhhhc--cCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCc-ccccHHHHHHHHHHHH--HhccCCcceEEe
Q 010972 83 FDNT-DVAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPA-EQCSAAATLGILYFII--LAHQKNFDLVWC 156 (496)
Q Consensus 83 ~~~~-~~~~~~--~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p-~~~Sa~~~~~~l~~~~--~~~~~~~~~~~~ 156 (496)
.+.. ...++. ..+.++.++++++++++.+.+.+ ...+ +++..+. .+-++...+..++.++ ++..+.+.+.||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i-~hai-aL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP 227 (438)
T PF00996_consen 150 YEEDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFI-GHAI-ALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYP 227 (438)
T ss_dssp GCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHH-HHHT-S-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEE
T ss_pred cccCCcchhhccccccccHHHHHHhcCCCHHHHHHH-HHhh-hhccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 5432 222332 45789999999999998875433 2222 1222121 1224556666666553 234455678999
Q ss_pred cCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEc
Q 010972 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 215 (496)
Q Consensus 157 ~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A 215 (496)
.-|.++ |++++.+...-.||...||++|.+|..+++ |++.+|..+|+++.|+.||..
T Consensus 228 ~YG~GE-LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~-g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 228 LYGLGE-LPQAFCRLSAVYGGTYMLNRPIDEIVVDED-GKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp TT-TTH-HHHHHHHHHHHTT-EEESS--EEEEEEETT-TEEEEEEETTEEEEESEEEEE
T ss_pred ccCCcc-HHHHHHHHhhhcCcEEEeCCccceeeeecC-CeEEEEecCCEEEEcCEEEEC
Confidence 999998 999999888778999999999999999665 788889889999999999963
No 35
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.64 E-value=6.9e-07 Score=93.70 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=90.5
Q ss_pred hccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHH---hccCCcceEEecCCchhhhHHH
Q 010972 91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL---AHQKNFDLVWCRGTLREKIFEP 167 (496)
Q Consensus 91 ~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~---~~~~~~~~~~~~GG~~~~l~~a 167 (496)
+++|+.|+.||+++.++.. ....+|..+ | +-....||..+..+++++.. .-...+.+.+.+....+.++.+
T Consensus 158 ~~Ld~~tI~d~f~~~Ff~t-~Fw~~w~t~----F-aF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~P 231 (576)
T PRK13977 158 EKLDDKTIEDWFSPEFFET-NFWYYWRTM----F-AFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLP 231 (576)
T ss_pred HHhCCcCHHHHHhhcCchh-HHHHHHHHH----H-CCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHH
Confidence 3589999999999976644 334566555 3 34588999999999988731 1122334455555555669999
Q ss_pred HHHHHHhcCCEEEcCceeeeEEec--CCCCeEEEEEe--CCe-----EEecCEEEEcCChhhH
Q 010972 168 WMDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVC--GKE-----TYSAGAVVLAVGISTL 221 (496)
Q Consensus 168 L~~~l~~~G~~I~l~~~V~~I~~~--~~~g~v~~V~~--~G~-----~~~Ad~VV~A~p~~~~ 221 (496)
|.+.++++|++|++|++|++|..+ ++.++|++|.+ +|+ ...+|.||+|+..-.-
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 999999999999999999999985 22257888877 332 2478999999876543
No 36
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=7.9e-07 Score=87.23 Aligned_cols=198 Identities=15% Similarity=0.199 Sum_probs=134.0
Q ss_pred ccCCCccHHHHHHHhCCCCCCCccc-c-eeeccCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhhHHHHHh
Q 010972 4 FWYPFRNIFSLVDELGIKPFTGWMK-S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVI 81 (496)
Q Consensus 4 ~~~~y~~~~~Ll~eLGl~~~~~~~~-~-~~~~~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~~~~~~~ 81 (496)
|+-+...+..+|-+-|+...+.+.. . .++..+|+.+ +.|-+-...+.++++++.+|-++.+++.-..
T Consensus 80 ~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~-----------KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~ 148 (440)
T KOG1439|consen 80 FLMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIY-----------KVPATEAEALTSPLMGLFEKRRVMKFLKFVL 148 (440)
T ss_pred hhhccchHHHHHHHhchhhheEEEeecceEEEECCeEE-----------ECCCCHHHHhcCCccchhHHHHHHHHHHHHh
Confidence 4556677888888889887766664 2 2222455532 2455655678999999999999888766655
Q ss_pred ccCC-ChhhhhccCC--ccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHH--HhccCCcceEEe
Q 010972 82 DFDN-TDVAWRKYDS--ITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWC 156 (496)
Q Consensus 82 ~~~~-~~~~~~~~d~--~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~--~~~~~~~~~~~~ 156 (496)
.++. ....|+.++- .|+.+++...+..++.++ +....+......+.-+.++...+..+..+. ++..+.+...||
T Consensus 149 n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~-f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP 227 (440)
T KOG1439|consen 149 NYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTID-FIGHAIALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLYP 227 (440)
T ss_pred hhhhhccccccccccccchHHHHHHHhccccccee-eeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhcCCCcceec
Confidence 5432 3444565543 399999999888887653 333233222222334445555555444442 133444457889
Q ss_pred cCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEc
Q 010972 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 215 (496)
Q Consensus 157 ~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A 215 (496)
..|+++ |++.+++.-.-.||+..+|.++.+|....+ |.+.+|..+++...+..||+-
T Consensus 228 ~yGlgE-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~-gk~igvk~~~~v~~~k~vi~d 284 (440)
T KOG1439|consen 228 LYGLGE-LPQGFARLSAVYGGTYMLNKPIDEINETKN-GKVIGVKSGGEVAKCKKVICD 284 (440)
T ss_pred ccCcch-hhHHHHHHhhccCceeecCCceeeeeccCC-ccEEEEecCCceeecceEEec
Confidence 999999 999999876667999999999999999554 678777777777788877774
No 37
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.14 E-value=0.00041 Score=71.81 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
.+.++|.+.+++.|++|+++++|++|+.++ +++++|++++.++.||+||+|+.++.
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcch
Confidence 367788888888999999999999999876 55666777777899999999999976
No 38
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.96 E-value=0.00068 Score=67.85 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=53.2
Q ss_pred eEEecCCch--hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhHH
Q 010972 153 LVWCRGTLR--EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 222 (496)
Q Consensus 153 ~~~~~GG~~--~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~~ 222 (496)
+..+.+|.- ..+...+.+.+++.|++|+.+++|++|..++ +++++|.++++++.||.||+|+.++.-.
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE 195 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh
Confidence 344555531 2367788888889999999999999999876 6677788865589999999999998744
No 39
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.95 E-value=0.00011 Score=73.94 Aligned_cols=96 Identities=22% Similarity=0.243 Sum_probs=63.7
Q ss_pred CCcccccHHHHHHHHHHHHHhccCCcceEEecCC---chhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe
Q 010972 126 APAEQCSAAATLGILYFIILAHQKNFDLVWCRGT---LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 202 (496)
Q Consensus 126 ~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~GG---~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~ 202 (496)
.+.+.++...+...+... .......+..+.+| ... +.+.|.+.+++.|++|+.+++|++|..++ ++|.+|++
T Consensus 111 ~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~g~i~~~~-l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~ 185 (358)
T PF01266_consen 111 IPYELLSPEELRELFPFL--NPRIEGGVFFPEGGVIDPRR-LIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRT 185 (358)
T ss_dssp TTEEEEEHHHHHHHSTTS--STTTEEEEEETTEEEEEHHH-HHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEE
T ss_pred ccccccchhhhhhhhccc--ccchhhhhcccccccccccc-hhhhhHHHHHHhhhhccccccccchhhcc--cccccccc
Confidence 355666666554333211 11111233445555 444 88899999999999999999999999988 67888999
Q ss_pred CCeEEecCEEEEcCChhhHHHhhcc
Q 010972 203 GKETYSAGAVVLAVGISTLQELIKN 227 (496)
Q Consensus 203 ~G~~~~Ad~VV~A~p~~~~~~Ll~~ 227 (496)
+++++.||.||+|+.++... |+..
T Consensus 186 ~~g~i~ad~vV~a~G~~s~~-l~~~ 209 (358)
T PF01266_consen 186 SDGEIRADRVVLAAGAWSPQ-LLPL 209 (358)
T ss_dssp TTEEEEECEEEE--GGGHHH-HHHT
T ss_pred cccccccceeEeccccccee-eeec
Confidence 65569999999999987643 4443
No 40
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00029 Score=68.88 Aligned_cols=193 Identities=13% Similarity=0.161 Sum_probs=120.9
Q ss_pred ccCCCccHHHHHHHhCCCCCCCccc-c-eeeccCCccccccccccCCCCCCCcccccccccCCCChhhhhhhhhHHHHHh
Q 010972 4 FWYPFRNIFSLVDELGIKPFTGWMK-S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVI 81 (496)
Q Consensus 4 ~~~~y~~~~~Ll~eLGl~~~~~~~~-~-~~~~~~G~~~~~~~~~~~~~l~~P~~~~~~l~~~~ls~~~kl~~~~~~~~~~ 81 (496)
||-+...++.+|-+-|+...+.+.+ . .++..+|+. .+.|-+-..++.+++||+.+|-++.+++.-..
T Consensus 81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~-----------~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~ 149 (434)
T COG5044 81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKI-----------YKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVS 149 (434)
T ss_pred hhcccchHHHHHHHhChHhheeeeeccccEEecCCcE-----------EECCccHHhhhcCCCcchhhHHHHHHHHHHHH
Confidence 4556777888888999987766654 2 222244542 23466666688999999999999877653322
Q ss_pred ccCCChhhhhccC-CccHHHHHHH-hCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHH--hccCCcceEEec
Q 010972 82 DFDNTDVAWRKYD-SITARELFKQ-FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCR 157 (496)
Q Consensus 82 ~~~~~~~~~~~~d-~~Sv~~~l~~-~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~--~~~~~~~~~~~~ 157 (496)
........++++. +.++-+++.. ++.+....+.+...++... + -+..+...+..+..++. +..+.+...||+
T Consensus 150 n~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l---d-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~ 225 (434)
T COG5044 150 NYAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL---D-LDIPAREALERILRYMRSFGDYGKSPYLYPR 225 (434)
T ss_pred hHHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc---c-ccCCchHHHHHHHHHHHhhcccCCCcceeec
Confidence 2211222344433 2445555554 4455444333333333221 2 44556656555554431 233445578899
Q ss_pred CCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEc
Q 010972 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 215 (496)
Q Consensus 158 GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A 215 (496)
-|.++ |++.+++.-.-.||+..+|+++.+|...++ |.+|..++.+..|..||+.
T Consensus 226 YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk~---v~~v~~~~~~~ka~KiI~~ 279 (434)
T COG5044 226 YGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETKD---VETVDKGSLTQKAGKIISS 279 (434)
T ss_pred cCchh-hhHHHHHhhhccCceeecCcchhhhccccc---eeeeecCcceeecCcccCC
Confidence 88898 999999887777999999999999987662 4455556677888888864
No 41
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.67 E-value=0.0077 Score=62.15 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+...|++.+++.|++++.+++|++|+..++ +++.+|++++.++.|+.||+++..+.
T Consensus 185 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~g~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 185 VAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTRGFIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCCceEECCEEEECCChhh
Confidence 555677778889999999999999986533 45667887655799999999988875
No 42
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.63 E-value=0.01 Score=60.49 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+++.|++++.+++|++|+.++ +.+. |+++++++.||.||+|+..+.
T Consensus 147 ~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~-v~~~~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 147 ALRALQELAEAHGATVRDGTKVVEIEPTE--LLVT-VKTTKGSYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEE-EEeCCCEEEeCEEEEecCcch
Confidence 56777777888899999999999998866 4554 777655799999999999864
No 43
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.58 E-value=0.00021 Score=72.04 Aligned_cols=117 Identities=21% Similarity=0.199 Sum_probs=81.3
Q ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCCcceEEecCCchhhhHHHHHHHH
Q 010972 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 172 (496)
Q Consensus 93 ~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~l~~aL~~~l 172 (496)
+-..|..+||++.++++.+++.++.+.++..|+.+ .++++...+--+. + ...+.+..+||-.. |++.|.
T Consensus 67 ~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla-----~-a~~gl~sV~GGN~q-I~~~ll--- 135 (368)
T PF07156_consen 67 LTKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLA-----G-ATGGLWSVEGGNWQ-IFEGLL--- 135 (368)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeee-----e-ccCCceEecCCHHH-HHHHHH---
Confidence 34679999999999999999999999999999886 3455543332111 1 12356778888765 777665
Q ss_pred HhcCCEEEcCceeeeE-EecCCCCeEEEEEeC---C-eEEecCEEEEcCChhhH
Q 010972 173 RTRGCEFLDGRRVTDF-IYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTL 221 (496)
Q Consensus 173 ~~~G~~I~l~~~V~~I-~~~~~~g~v~~V~~~---G-~~~~Ad~VV~A~p~~~~ 221 (496)
++.|.+| +|++|++| ...+++.....|... + ..-.+|.||+|+|....
T Consensus 136 ~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 136 EASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred HHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 4568999 99999999 444432222334442 2 23357999999999643
No 44
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.34 E-value=0.0038 Score=65.64 Aligned_cols=55 Identities=16% Similarity=0.025 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhH
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~ 221 (496)
.+.+.|++.+++.|++|+.+++|++|+. + +.+ .|+++++++.||+||+|+..+..
T Consensus 184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~~-~v~t~~g~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEE-G--QPA-VVRTPDGQVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEee-C--Cce-EEEeCCcEEECCEEEEccccccc
Confidence 3678888888889999999999999975 3 223 47776557999999999988753
No 45
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.11 E-value=0.015 Score=59.45 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=48.7
Q ss_pred eEEecCCch--hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC-CeEEecCEEEEcCChhhH
Q 010972 153 LVWCRGTLR--EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 221 (496)
Q Consensus 153 ~~~~~GG~~--~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~-G~~~~Ad~VV~A~p~~~~ 221 (496)
+.++.+|.- ..+..+|.+.+++ |++|+.+++|++|+.++ +++ .|+++ |..+.||.||+|+.++..
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~-~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGW-QLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeE-EEEeCCCCEEEcCEEEEcCCcccc
Confidence 445555531 2367778877777 99999999999999876 445 47764 556899999999998863
No 46
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.07 E-value=0.11 Score=52.68 Aligned_cols=55 Identities=24% Similarity=0.264 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhH
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~ 221 (496)
+...+.+.+.+.|++|+++++|++|+.++ +.+ .|++++.++.||.||+|+.++..
T Consensus 151 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 151 AIKAHLRLAREAGAELLFNEPVTAIEADG--DGV-TVTTADGTYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeE-EEEeCCCEEEeeEEEEecCcchh
Confidence 45556666777899999999999999876 445 47776557999999999998753
No 47
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.01 E-value=0.063 Score=55.45 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--CC----eEEecCEEEEcCChhhH
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK----ETYSAGAVVLAVGISTL 221 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G----~~~~Ad~VV~A~p~~~~ 221 (496)
+...|.+.+++.|++|+.+++|++|+.++ +.++ +.+ ++ .++.||.||+|+.++..
T Consensus 199 ~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 199 FTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEE-EEEEcCCCCccceEecCEEEECCCcChH
Confidence 56777888888999999999999998766 4454 433 22 36899999999999863
No 48
>PRK10015 oxidoreductase; Provisional
Probab=96.90 E-value=0.068 Score=55.62 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+-..|.+.+++.|++|+.+++|+.|..++ +++.+|.+++.++.||.||.|.....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcch
Confidence 44457777778899999999999998776 56776777777899999999988754
No 49
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.017 Score=57.42 Aligned_cols=159 Identities=11% Similarity=0.088 Sum_probs=106.9
Q ss_pred CCcccccccccCCCChhhhhhhhhHHHHHhcc--CCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcc
Q 010972 52 TPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDF--DNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAE 129 (496)
Q Consensus 52 ~P~~~~~~l~~~~ls~~~kl~~~~~~~~~~~~--~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~ 129 (496)
.|=+-..+++++-|++.+|-.+.+++...... ++......+..+.++.+||...+.++.+. .++- .++--.+.+
T Consensus 177 VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~~~~e~~F~EyL~~~rltp~lq-s~vl---~aIaM~~~~ 252 (547)
T KOG4405|consen 177 VPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYVEFRERPFSEYLKTMRLTPKLQ-SIVL---HAIAMLSES 252 (547)
T ss_pred cCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHHHhhcCcHHHHHHhcCCChhhH-HHHH---HHHHhcCcc
Confidence 34344447888899999998776655444333 33444566678899999999999999874 4432 222223555
Q ss_pred cccHHHHHHHHHHHH--HhccCCcceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEE-EEEeCCeE
Q 010972 130 QCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCGKET 206 (496)
Q Consensus 130 ~~Sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~-~V~~~G~~ 206 (496)
+.++..-+.....++ +++.+...+.||-=|.++ |++.+.+...-.|+---++.+|+.|..+.....+. ++...|.+
T Consensus 253 ~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGE-LpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~r 331 (547)
T KOG4405|consen 253 QLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGE-LPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQR 331 (547)
T ss_pred cccHHHHHHHHHHHHHHhhccCCCcceeeccCCCc-chHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcch
Confidence 566554443333332 234455568889888898 99999988877899899999999999987422222 11224888
Q ss_pred EecCEEEEc
Q 010972 207 YSAGAVVLA 215 (496)
Q Consensus 207 ~~Ad~VV~A 215 (496)
+.+.++|+.
T Consensus 332 i~~k~~v~s 340 (547)
T KOG4405|consen 332 INAKNFVVS 340 (547)
T ss_pred hcceeeeec
Confidence 899988875
No 50
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.60 E-value=0.071 Score=58.78 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=48.8
Q ss_pred eEEecCCch--hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC-CeEEecCEEEEcCChhhH
Q 010972 153 LVWCRGTLR--EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 221 (496)
Q Consensus 153 ~~~~~GG~~--~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~-G~~~~Ad~VV~A~p~~~~ 221 (496)
+.++.+|.- ..+.++|.+.+++ |++|+.+++|++|..++ +++. |.++ |..+.||.||+|+..+..
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~-v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQ-LDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEE-EEECCCcEEECCEEEECCCCCcc
Confidence 455556532 2367778888877 99999999999999876 5565 7675 555789999999998753
No 51
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.57 E-value=0.0084 Score=61.64 Aligned_cols=65 Identities=22% Similarity=0.276 Sum_probs=45.8
Q ss_pred eEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 153 ~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
-.||.-.....+.+.|.+.++++|++|+++++|++|+.++ +.+..|.+ +++++.||.||+|+...
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEETTTEEEEESEEEE----S
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeeccCcccccCCEEEEecCCC
Confidence 4567643334488999999999999999999999999987 45667888 78899999999998753
No 52
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.55 E-value=0.037 Score=57.14 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=87.2
Q ss_pred CCChhhhhhhhhHHHHHhccCCChhhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHH
Q 010972 64 RLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI 143 (496)
Q Consensus 64 ~ls~~~kl~~~~~~~~~~~~~~~~~~~~~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~ 143 (496)
.|+..+++.+.+++.. ++ +.+++.++.||+....+...+. .+| +.+|+-.|- -||..+-.+++++
T Consensus 121 ~Ls~k~r~eL~kL~l~------~E---~~L~~~~I~d~F~~~FF~SnFW-~~W----~T~FAFqpW-hSa~E~rRyl~Rf 185 (500)
T PF06100_consen 121 GLSEKDRMELIKLLLT------PE---EDLGDKRIEDWFSESFFESNFW-YMW----STMFAFQPW-HSAVEFRRYLHRF 185 (500)
T ss_pred CCCHHHHHHHHHHhcC------CH---HHhCcccHHHhcchhhhcCchh-HhH----HHhhccCcc-hhHHHHHHHHHHH
Confidence 3566777766664432 22 2478999999999865554443 233 334554544 4888888888877
Q ss_pred HHhccCC----cceEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCC--eEEEEEe--CCe--EE---ecC
Q 010972 144 ILAHQKN----FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC--CISDVVC--GKE--TY---SAG 210 (496)
Q Consensus 144 ~~~~~~~----~~~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g--~v~~V~~--~G~--~~---~Ad 210 (496)
. ..-.+ ..+...+=...+.++.+|.+.|+++|+++++|+.|+.|..+.+++ .++.+.+ +|+ ++ .-|
T Consensus 186 ~-h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~D 264 (500)
T PF06100_consen 186 I-HEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDD 264 (500)
T ss_pred H-HhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCC
Confidence 4 22221 112222222334588999999999999999999999999863322 3444444 343 23 467
Q ss_pred EEEEcCChh
Q 010972 211 AVVLAVGIS 219 (496)
Q Consensus 211 ~VV~A~p~~ 219 (496)
.|+++...-
T Consensus 265 lV~vT~GS~ 273 (500)
T PF06100_consen 265 LVFVTNGSM 273 (500)
T ss_pred EEEEECCcc
Confidence 888876543
No 53
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=96.48 E-value=0.25 Score=48.33 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHHHhhc
Q 010972 165 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIK 226 (496)
Q Consensus 165 ~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~Ll~ 226 (496)
..++...++++|+.++-|..|+.+...++.+....|+| +|..+.|+.+|+|+.+|..+ +|+
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~ 217 (399)
T KOG2820|consen 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLP 217 (399)
T ss_pred HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcC
Confidence 45677778899999999999999985433244445666 78789999999999999866 454
No 54
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.40 E-value=0.0052 Score=62.40 Aligned_cols=115 Identities=13% Similarity=0.079 Sum_probs=77.2
Q ss_pred ccHHHHH---HHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccC----CcceEEecCCchhhhHHHH
Q 010972 96 ITARELF---KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK----NFDLVWCRGTLREKIFEPW 168 (496)
Q Consensus 96 ~Sv~~~l---~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~----~~~~~~~~GG~~~~l~~aL 168 (496)
.++.+|. .+. +++.+.+.|+.|.....|+.+|+++++.++..+=..+ ...+ ..-.++|++|... +.+.|
T Consensus 129 ~~~~e~~d~~~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~--~~d~~yf~d~~q~~P~~Gyt~-~~~~m 204 (377)
T TIGR00031 129 EELQEIADPDIQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVL--SEDSSYFPDRYQGLPKGGYTK-LFEKM 204 (377)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHhccccCceeeCCChHHCCHHHeEecceEe--cCCCCcccccccccccccHHH-HHHHH
Confidence 3444554 764 8999999999999999999999999998764211111 0011 1235789999655 66655
Q ss_pred HHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhHHH
Q 010972 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (496)
Q Consensus 169 ~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~~~ 223 (496)
. ...+.+|++|+.+..+..++ +++ ..+++.+. +.||.|.|++.+-+
T Consensus 205 l---~~~~i~v~l~~~~~~~~~~~--~~~---~~~~~~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 205 L---DHPLIDVKLNCHINLLKDKD--SQL---HFANKAIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred H---hcCCCEEEeCCccceeeccc--cce---eecccccc-CcEEEecCchHHHh
Confidence 4 34478999999888887644 333 23333333 88999988876543
No 55
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.36 E-value=0.012 Score=60.17 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=53.1
Q ss_pred hhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC-C--eEEecCEEEEcCChhhHHHhhc
Q 010972 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGISTLQELIK 226 (496)
Q Consensus 161 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~-G--~~~~Ad~VV~A~p~~~~~~Ll~ 226 (496)
+.++.++|.+.++++|+++..+++|.++..++ +++++|.++ + .++.||+||+|+..+....|+.
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHh
Confidence 34588999999999999999999999999887 668877764 3 4899999999999986666643
No 56
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.35 E-value=0.15 Score=54.35 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEcCChhhH
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL 221 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G--~~~~Ad~VV~A~p~~~~ 221 (496)
.++.++++.+.++|++|+.+++|++|+.++ +++++|++ +| .++.|+.||.|+.++.-
T Consensus 129 ~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 129 RLVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 467778888889999999999999999876 66777765 24 36899999999999863
No 57
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.33 E-value=0.37 Score=49.52 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+-|++..++.|++++.+++|+.+..+++ +.+.++..++.++.|+.||.|..+..
T Consensus 97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 97 FDKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred hhHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEEcCCEEEEcCEEEECCCcch
Confidence 445577788889999999999999999885 44443333457899999999998764
No 58
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.32 E-value=0.011 Score=59.03 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=49.4
Q ss_pred EEec-CCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC-CeEEecCEEEEcCC
Q 010972 154 VWCR-GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVG 217 (496)
Q Consensus 154 ~~~~-GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~-G~~~~Ad~VV~A~p 217 (496)
.+|+ ...+. |.++|..++++.|++|+++++|.+|+.+++ .. .+.++ |+++.||.+|+|+.
T Consensus 103 ~Fp~sdkA~~-Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--~f-~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 103 MFPDSDKASP-IVDALLKELEALGVTIRTRSRVSSVEKDDS--GF-RLDTSSGETVKCDSLILATG 164 (408)
T ss_pred ecCCccchHH-HHHHHHHHHHHcCcEEEecceEEeEEecCc--eE-EEEcCCCCEEEccEEEEecC
Confidence 4566 44555 899999999999999999999999999873 33 46674 66899999999997
No 59
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=96.18 E-value=0.57 Score=47.68 Aligned_cols=66 Identities=21% Similarity=0.124 Sum_probs=48.5
Q ss_pred EEecCCchh--hhHHHHHHHHHhcC-CEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhHH
Q 010972 154 VWCRGTLRE--KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 222 (496)
Q Consensus 154 ~~~~GG~~~--~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~~ 222 (496)
..+.+|.-. .+..++++.++++| ..+..+++|..+..++ +++.|.+++.++.||+||+|+.++.-.
T Consensus 146 ~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~v~t~~g~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 146 FDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG---RVVGVETDGGTIEADKVVLAAGAWAGE 214 (387)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC---cEEEEEeCCccEEeCEEEEcCchHHHH
Confidence 344444321 36778888898999 5777799999998751 255688865559999999999988643
No 60
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.14 E-value=0.45 Score=51.98 Aligned_cols=57 Identities=21% Similarity=0.126 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecC-CCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~-~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
.+..++++.+++.|++|+.+++|++|..++ + |++++|++ +|+ ++.||.||.|+.++.
T Consensus 233 rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 233 RLNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 467778888889999999999999998763 2 56776664 344 579999999999985
No 61
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.01 E-value=0.48 Score=49.98 Aligned_cols=68 Identities=21% Similarity=0.187 Sum_probs=51.6
Q ss_pred ceEEecCCch-hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC----Ce--EEecCEEEEcCChhhHH
Q 010972 152 DLVWCRGTLR-EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQ 222 (496)
Q Consensus 152 ~~~~~~GG~~-~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~----G~--~~~Ad~VV~A~p~~~~~ 222 (496)
.+.|+.+-.. .+|.-..+..+.++|++|++.++|+++..++ | +++|.+. |+ ++.|+.||-|+.||.-.
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 4566654332 2455566666788999999999999999987 6 8899872 43 57999999999999743
No 62
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.01 E-value=0.34 Score=47.04 Aligned_cols=54 Identities=24% Similarity=0.259 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+++.|++++++++|+++..++ +++. +.. ++++++||.||.|.....
T Consensus 93 l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~-~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 93 FDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVV-VIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEE-EEEcCccEEEEeCEEEECCCcch
Confidence 55667777788899999999999998876 4443 333 356899999999999864
No 63
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=95.95 E-value=0.02 Score=57.97 Aligned_cols=55 Identities=24% Similarity=0.194 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+-+.+.|+++|++|++++.|..|+..+ +.+.+|.+ +|+++.+|+||+|+.-..
T Consensus 175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 175 VVKNIREYLESLGGEIRFNTEVEDIEIED--NEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHhcCcEEEeeeEEEEEEecC--CceEEEEccCCcEEecCEEEEccCcch
Confidence 56678888999999999999999999988 55666777 578999999999987643
No 64
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.52 E-value=0.053 Score=56.49 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=49.8
Q ss_pred EecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC--CeEEecCEEEEcCChh
Q 010972 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIS 219 (496)
Q Consensus 155 ~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~--G~~~~Ad~VV~A~p~~ 219 (496)
++.++... +.+.|.+.+++.|++|+++++|++|..+++++++.+|... +.++.|+.||+|+...
T Consensus 117 ~~~~~g~~-l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 117 FLRGGGKA-LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eecCCHHH-HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 34444444 8889999999999999999999999876311678777663 3578999999999853
No 65
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.41 E-value=0.049 Score=57.53 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=46.1
Q ss_pred hHHHHHHHHHh----cC--CEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhH
Q 010972 164 IFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (496)
Q Consensus 164 l~~aL~~~l~~----~G--~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~ 221 (496)
+++++.+.+++ .| ++|+++++|+.|+.++ +.++.|.++.+++.||.||+|+.++..
T Consensus 213 L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~~~V~T~~G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 213 LSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSLYKIHTNRGEIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCeEEEEECCCEEEeCEEEECcChhHH
Confidence 77888888888 77 6799999999999875 335567786557999999999999864
No 66
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=95.33 E-value=0.055 Score=55.54 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeE-EecCEEEEcCChhhH
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKET-YSAGAVVLAVGISTL 221 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~-~~Ad~VV~A~p~~~~ 221 (496)
++.++++.+.++|++|++|++|+.|+..+| | ++.+.+ +|++ ++|+.||.+.+....
T Consensus 155 ~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g-~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 155 LTRALAEEAQANGVELRLNTEVTGIEKQSD-G-VFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHcCCEEEecCeeeEEEEeCC-c-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence 678899999999999999999999999886 3 443455 4655 999999999988653
No 67
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.33 E-value=0.18 Score=51.11 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=48.2
Q ss_pred eEEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC--CeEEecCEEEEcCChhh
Q 010972 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST 220 (496)
Q Consensus 153 ~~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~--G~~~~Ad~VV~A~p~~~ 220 (496)
-.||.-...+-+.++|...+++.|++|+++++|++| ++ +.. .|.+. ++.+.||+||+|+.-..
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~-~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTL-RFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcE-EEEECCCceEEecCEEEEcCCCcc
Confidence 456754444449999999999999999999999999 33 233 46653 35799999999998744
No 68
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.09 E-value=0.08 Score=54.38 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=50.0
Q ss_pred eEEecCCc--hhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 153 LVWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 153 ~~~~~GG~--~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+.++.+|. ...+.++|.+.+++.|++|+++++|++|..++ +++ .|.++++++.||.||+|++.+.
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEECCCEEEeCEEEECCCcch
Confidence 34455553 12377888888888999999999999998766 445 4777655799999999999875
No 69
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.01 E-value=0.087 Score=55.46 Aligned_cols=60 Identities=27% Similarity=0.227 Sum_probs=47.9
Q ss_pred cCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC---C--eEEecCEEEEcCChh
Q 010972 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 157 ~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~---G--~~~~Ad~VV~A~p~~ 219 (496)
.++... +.+.|.+.+++.|++|+++++|++|..++ ++|++|++. | ..+.|+.||+|+...
T Consensus 127 ~g~g~~-l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 127 WGGGKA-LVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred cCCHHH-HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 344333 78889999999999999999999999865 678888762 2 368999999999754
No 70
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.79 E-value=0.094 Score=54.24 Aligned_cols=58 Identities=28% Similarity=0.320 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC----Ce--EEecCEEEEcCChhhH
Q 010972 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL 221 (496)
Q Consensus 162 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~----G~--~~~Ad~VV~A~p~~~~ 221 (496)
..+.+.|.+.++++|++|+++++|++|..++ ++|++|... |+ ++.|+.||+|+.-...
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3478899999999999999999999999986 789998762 54 5789999999987654
No 71
>PLN02697 lycopene epsilon cyclase
Probab=94.58 E-value=3.4 Score=44.13 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+.+.|+++ +++.|++|..+++ .+..+++ +|+++.||.||.|..++.
T Consensus 194 L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~--~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 194 LHEELLRRCVESGVSY-LSSKVDRITEASD--GLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHhcCCEE-EeeEEEEEEEcCC--cEEEEEEcCCcEEECCEEEECCCcCh
Confidence 5567777777789988 7889999987663 3433444 678899999999999977
No 72
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=94.57 E-value=0.13 Score=55.28 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G--~~~~Ad~VV~A~p~~~ 220 (496)
.+..+++..++++|++|+.+++|++|..++ +++++|++ +| .++.||.||.|+.++.
T Consensus 150 rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 150 RLTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 356667777888999999999999999876 66777765 23 4789999999999986
No 73
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.54 E-value=0.083 Score=48.52 Aligned_cols=52 Identities=25% Similarity=0.212 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC-CeEEecCEEEEcCCh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 218 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~-G~~~~Ad~VV~A~p~ 218 (496)
+.+-+.+.+++.+.+|+++++|++|..+++ ++ .|++. ++++.||+||+|+..
T Consensus 84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~w-~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 84 VLDYLQEYAERFGLEIRFNTRVESVRRDGD--GW-TVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHTTGGEETS--EEEEEEETT--TE-EEEETTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHhhcCcccccCCEEEEEEEecc--EE-EEEEEecceeeeeeEEEeeec
Confidence 556666667778889999999999999874 44 47775 568999999999985
No 74
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.27 E-value=0.19 Score=54.24 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=50.3
Q ss_pred EecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 155 ~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+..++.+..+.++|.+.+++.|++|..+++|+++..++ |+|.||.. +|+ .+.|+.||+|+.-..
T Consensus 112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 33333444488889988888899999999999999865 78999875 354 579999999998754
No 75
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.24 E-value=0.14 Score=55.20 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=47.8
Q ss_pred ecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEec-CEEEEcCChhh
Q 010972 156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 220 (496)
Q Consensus 156 ~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~A-d~VV~A~p~~~ 220 (496)
..+| .. |..+|.+.+++.|++|+++++|++|..++ |+|++|.. +|+ .+.| +.||+|+.-..
T Consensus 213 ~~~G-~~-l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 213 AAGG-QA-LAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred cCCh-HH-HHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 3455 44 88899999999999999999999998754 78999866 343 3556 58999997754
No 76
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.19 E-value=0.19 Score=51.72 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=49.0
Q ss_pred EecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 155 ~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+|.......+.+.+.+.+++.|++|+++++|++|..++ +.+ .|+++++++.||.||+|++...
T Consensus 98 ~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~-~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 98 FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGF-GVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeE-EEEECCcEEEcCEEEECCCCcc
Confidence 44433333488889999999999999999999998765 434 4777777899999999999744
No 77
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=94.00 E-value=0.19 Score=52.22 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+-+.|.+.+++.|++|+.+++|++|+.++ +++.+|+++|+++.||.||.|.....
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 44556777778899999999999998776 56766666778899999999998754
No 78
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=93.92 E-value=0.18 Score=54.72 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEec-CEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~A-d~VV~A~p~~~ 220 (496)
.+.++|.+.+++.|++|+++++|++|..++ |+|++|.. +++ ++.| +.||+|+....
T Consensus 218 ~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 218 ALVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 377889999999999999999999998865 67888765 333 5788 99999998875
No 79
>PRK06185 hypothetical protein; Provisional
Probab=93.89 E-value=2.2 Score=43.91 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe---CCe-EEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G~-~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+.+.|.+.+.+. |++|+.++.|+++..++ +++.+|++ +|+ +++||.||.|...+. +.+.+
T Consensus 110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred HHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 556677766554 78999999999999876 55655554 353 799999999998875 44444
No 80
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.88 E-value=0.2 Score=53.98 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEecC-EEEEcCChhh
Q 010972 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 220 (496)
Q Consensus 162 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~Ad-~VV~A~p~~~ 220 (496)
..+...|.+.+++.|++|+++++|++|..++ |+|++|.. +|+ ++.|+ .||+|+.-..
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 3478889999999999999999999999876 78999877 454 47785 7999987754
No 81
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=93.77 E-value=0.67 Score=47.87 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=50.4
Q ss_pred ceEEecCCchhhhHHHHHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEEe--C-C--eEEecCEEEEcCCh
Q 010972 152 DLVWCRGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--G-K--ETYSAGAVVLAVGI 218 (496)
Q Consensus 152 ~~~~~~GG~~~~l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~-G--~~~~Ad~VV~A~p~ 218 (496)
+.....|..+..+.++|.+.+++ .+.+|+-++.+.+|..+++ ..+.||.+ + + .++.|+.||+|+.-
T Consensus 123 RIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~-~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 123 RILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG-IGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred eEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC-ceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 34445566666788899998876 5889999999999998873 24557777 2 3 46899999999875
No 82
>PRK07121 hypothetical protein; Validated
Probab=93.74 E-value=0.22 Score=52.85 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEec-CEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~A-d~VV~A~p~~~ 220 (496)
.+.+.|.+.+++.|++|+++++|++|..+++ |+|++|+. +++ .+.| +.||+|+....
T Consensus 178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 4788899999999999999999999998754 67888876 333 5788 99999998754
No 83
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=93.65 E-value=6.3 Score=40.11 Aligned_cols=54 Identities=26% Similarity=0.150 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhH
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~ 221 (496)
+-+.+.+.+. .++.+++++.|++|+.++ +.+. |++ +|++++|+.||-|.++...
T Consensus 89 f~~~l~~~~~-~~~~~~~~~~V~~i~~~~--~~~~-v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 89 FYEFLLERAA-AGGVIRLNARVTSIEETG--DGVL-VVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHHHHhh-hCCeEEEccEEEEEEecC--ceEE-EEECCCCEEEeeEEEECCCcccc
Confidence 5556666666 567899999999999877 3233 455 6789999999999886443
No 84
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.60 E-value=0.31 Score=52.70 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=51.0
Q ss_pred EEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 154 ~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
.+..++.+..|..+|.+.+.+.|++|..+++|+++..+++ |+|.||.. +|+ .+.|++||+|+.-..
T Consensus 118 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 118 CAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred EecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 3333334445888898888888999999999999998644 78999875 354 578999999998754
No 85
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.56 E-value=0.23 Score=53.86 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEecC-EEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~Ad-~VV~A~p~~~ 220 (496)
+...|.+.+++.|++|+++++|++|..+++ |+|++|.. +|+ ++.|+ .||+|+....
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 677788888888999999999999998755 78999876 343 47887 6999997754
No 86
>PRK06175 L-aspartate oxidase; Provisional
Probab=93.43 E-value=0.35 Score=50.42 Aligned_cols=62 Identities=11% Similarity=0.257 Sum_probs=46.3
Q ss_pred ecCCchhhhHHHHHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEecCEEEEcCChh
Q 010972 156 CRGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 219 (496)
Q Consensus 156 ~~GG~~~~l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~Ad~VV~A~p~~ 219 (496)
+.+..+..+.+.|.+.+++ .|++|+++++|++|..++ +++.+|.. +|+ ++.|+.||+|+...
T Consensus 122 ~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 122 FKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred cCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 3333333477888877765 489999999999998765 67878653 444 58999999999873
No 87
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.43 E-value=5.6 Score=40.64 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhcC-CEEEcCceeeeEEecCCCCeEEEEEe--CCeEEecCEEEEcCChhh-HHHhhc
Q 010972 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST-LQELIK 226 (496)
Q Consensus 164 l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~~~~Ad~VV~A~p~~~-~~~Ll~ 226 (496)
+.+.|.+.+.+.+ .+++.++.|+.++.+++ .+. |++ +|+++.||.||-|-..+. +++.+.
T Consensus 106 l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~--~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 106 LLNALLEAARALPNVTLRFGAEVEAVEQDGD--GVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHhhCCCcEEEcCceEEEEEEcCC--ceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 6778888888777 79999999999999874 465 444 678899999999999876 455555
No 88
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.40 E-value=4.6 Score=42.98 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CC----eEEecCEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK----ETYSAGAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G----~~~~Ad~VV~A~p~~~ 220 (496)
.+...++..++++|++|+.+++|++|..++ +.+ +|++ ++ .++.|+.||.|+.++.
T Consensus 156 rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~-~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 156 RLVVLNALDAAERGATILTRTRCVSARREG--GLW-RVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEE-EEEEEeCCCCEEEEEecEEEECCCccH
Confidence 355667777888999999999999999865 433 4655 32 3589999999999986
No 89
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=93.29 E-value=0.29 Score=51.72 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=48.0
Q ss_pred eEEecCCch--hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEcCChhh
Q 010972 153 LVWCRGTLR--EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (496)
Q Consensus 153 ~~~~~GG~~--~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G--~~~~Ad~VV~A~p~~~ 220 (496)
++.+.+|.- ..++++|.+.+++.|++|+++++|++|+.+++ +.+. |++ +| .++.||+||+|+..+.
T Consensus 167 l~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 167 NWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred EEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEE-EEEeeccCCceEEEECCEEEECCCcch
Confidence 444555521 23788888888889999999999999998653 3343 432 23 3689999999999876
No 90
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=93.29 E-value=0.32 Score=50.35 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CC--eEEecCEEEEcCChh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G--~~~~Ad~VV~A~p~~ 219 (496)
.+.+.|.+.+++.|++|++++.|++++.++ +++..+.. +| .++.||.||+|+...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 388889999999999999999999999876 55665544 34 358999999998863
No 91
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=93.19 E-value=0.27 Score=51.32 Aligned_cols=56 Identities=30% Similarity=0.362 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe---CCe--EEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G~--~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+++.|++|+++++|++|..+++ |++++|++ +++ .+.+|.||+|+....
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 778888889999999999999999998654 57877766 233 468999999998754
No 92
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=93.17 E-value=0.27 Score=53.20 Aligned_cols=56 Identities=27% Similarity=0.329 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEec-CEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~A-d~VV~A~p~~~ 220 (496)
.+.++|.+.++++|++|+++++|++|..++ ++|.+|.. +|+ ++.| +.||+|+....
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 478889999999999999999999998765 78888876 343 4676 68999998764
No 93
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.04 E-value=0.41 Score=52.08 Aligned_cols=60 Identities=23% Similarity=0.233 Sum_probs=48.2
Q ss_pred chhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 160 ~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
.+..+.+.|.+.+++.|++|.++++|++|..+++ |+|.||.. +|+ .+.|+.||+|+.-..
T Consensus 147 tG~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 147 TGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred CHHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 3444788898888888999999999999998654 67888874 343 679999999998754
No 94
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.00 E-value=0.42 Score=51.82 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=50.0
Q ss_pred EecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 155 ~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+..++.+..|...|.+.+.+.|++|++++.|+++..+++ |+|.||.. +|+ .+.|+.||+|+....
T Consensus 136 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 136 AAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred ecCCCCHHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 333334445888888888788999999999999998644 78989875 353 578999999998754
No 95
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=92.95 E-value=0.32 Score=46.82 Aligned_cols=56 Identities=27% Similarity=0.276 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC------------CeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~------------G~~~~Ad~VV~A~p~~~ 220 (496)
+...|.+.+.+.|++|++++.|..|..+++ +++.+|+++ ..++.|+.||.|+..+.
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 777888888889999999999999988664 477777652 14689999999998654
No 96
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=92.68 E-value=0.37 Score=51.98 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEecC-EEEEcCChhh
Q 010972 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 220 (496)
Q Consensus 162 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~Ad-~VV~A~p~~~ 220 (496)
..+...|.+.+++.|++|+++++|++|..++ ++|.+|.. +|+ .+.|+ .||+|+.-..
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 3477888888888999999999999999865 67888876 443 57886 6999887644
No 97
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=92.66 E-value=0.34 Score=51.56 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe---CC--eEEecCEEEEcCChh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G--~~~~Ad~VV~A~p~~ 219 (496)
.+.+.|.+.+++.|++|+++++|++|..++ |+|++|.. +| .++.||.||+|+...
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 377889888999999999999999998765 67888766 23 268999999999753
No 98
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=92.45 E-value=0.41 Score=50.74 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcC-CEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhhH
Q 010972 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 221 (496)
Q Consensus 164 l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~~ 221 (496)
+.++|.+.+++.| ++|+++++|++|+.+++ +.+. |++ .|+ ++.||+||+|+..+..
T Consensus 185 l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 185 LTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEE-EEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 7888888888887 69999999999998654 4343 433 243 6899999999999863
No 99
>PRK08401 L-aspartate oxidase; Provisional
Probab=92.38 E-value=0.58 Score=49.26 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 162 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
..+.+.|.+.+++.|+++..+ .|+.+..++ |++.+|.++|+.+.|+.||+|+....
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCc
Confidence 348888999898899999876 788887755 67888888888899999999998865
No 100
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=92.19 E-value=0.65 Score=50.21 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=47.3
Q ss_pred chhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 160 ~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
.+..+...|.+.+++.|++|+.++.|++|..++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 127 ~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 127 TGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred CHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 333477888888888899999999999999875 78888764 353 589999999998754
No 101
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.16 E-value=0.68 Score=50.00 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 162 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
..+.++|.+.+.+.|++|+.++.|+++..++ |+|+||.. +|+ .+.|+.||+|+....
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 3477888888878899999999999999875 78999876 233 578999999998754
No 102
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.12 E-value=0.68 Score=50.13 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=49.4
Q ss_pred EecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 155 ~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
++..+.+..+.+.|.+.+++.|++|..++.|++|..++ |+|.||.. +|+ .+.|+.||+|+....
T Consensus 128 ~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 128 YAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred ecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 34333334488889988888899999999999998765 67887753 343 589999999998854
No 103
>PRK06847 hypothetical protein; Provisional
Probab=91.80 E-value=0.52 Score=47.83 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+++.|++|+++++|++|+.++ +.+. |.+ +|+++.||.||.|...+.
T Consensus 109 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 109 LARILADAARAAGADVRLGTTVTAIEQDD--DGVT-VTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEE-EEEcCCCEEEcCEEEECcCCCc
Confidence 56677777777899999999999998766 4454 555 678899999999999865
No 104
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=91.78 E-value=0.56 Score=50.77 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--C-Ce-EEecC-EEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-KE-TYSAG-AVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~-G~-~~~Ad-~VV~A~p~~~ 220 (496)
+.++|.+.+++.|++|+++++|++|..++ ++|++|++ + ++ ++.++ .||+|+....
T Consensus 216 l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 216 LAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 77888888889999999999999999876 78888876 2 33 46786 7999998754
No 105
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.77 E-value=0.73 Score=50.54 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 166 ~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+.|.+.+++.|++|++++.|++|..++ |+|.||.+ +|+ .+.|+.||+|+.-..
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 556667778899999999999999875 78888876 243 579999999998754
No 106
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=91.68 E-value=0.75 Score=50.08 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=43.4
Q ss_pred hhhhHHHHHHHHHhc----CCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChh
Q 010972 161 REKIFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 219 (496)
Q Consensus 161 ~~~l~~aL~~~l~~~----G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~ 219 (496)
+..+..+|.+.+++. |++|+++++|++|..+++ |+|+||.. +|+ .+.|+.||+|+.-.
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 333666676665443 799999999999998654 68888875 243 57899999999764
No 107
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=91.45 E-value=0.75 Score=44.16 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC-------C-----eEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~-------G-----~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+.+.|++|+.++.|+.|..++++.++.+|+++ | .++.|+.||.|++...
T Consensus 102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 6677888888899999999999999987631268888763 1 3689999999998653
No 108
>PRK12839 hypothetical protein; Provisional
Probab=91.38 E-value=0.69 Score=50.01 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe---CCe-EE-ecCEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TY-SAGAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G~-~~-~Ad~VV~A~p~~~ 220 (496)
.+...|.+.+++.|++|+++++|++|..+++ |+|++|.. +|+ ++ .++.||+|+....
T Consensus 215 ~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 215 ALTGRLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 3778888888889999999999999987644 68889875 343 33 4589999997754
No 109
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.36 E-value=0.95 Score=49.19 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=47.9
Q ss_pred CchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 159 G~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+.+..+.+.|.+.+.+.|++|+.++.|+++..+++ |+|.||.. +|+ .+.|+.||+|+.-..
T Consensus 145 ~tG~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 145 RTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred CChHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 34444788888888888999999999999998644 67888865 243 578999999997754
No 110
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=91.34 E-value=0.74 Score=46.83 Aligned_cols=52 Identities=27% Similarity=0.345 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCCh
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~ 218 (496)
+...+.+.+++. +.+|. ...|+.|..++ ++|.+|.+ +|+++.||.||+|+.+
T Consensus 97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTII-QGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEEE-ES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEEE-EcccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence 445566667764 45664 78999999988 78999999 5889999999999998
No 111
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=91.19 E-value=0.86 Score=46.90 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=48.5
Q ss_pred CchhhhHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe----C--CeEEecCEEEEcCChhhHH
Q 010972 159 TLREKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----G--KETYSAGAVVLAVGISTLQ 222 (496)
Q Consensus 159 G~~~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~----~--G~~~~Ad~VV~A~p~~~~~ 222 (496)
..+. |++.|.+.+.+. |.+|++|+.|+.|.+.+| |++ .|.+ . ..++.|+.|++......+.
T Consensus 179 nFG~-LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 179 NFGA-LTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GRW-EVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred cHHH-HHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CCE-EEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 3555 888999998877 899999999999999887 544 3554 1 3479999999988887665
No 112
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=90.99 E-value=0.96 Score=49.74 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
.+...|.+.+.+.|++|+.+++|++|..++ |+|.||.. +|+ .+.|+.||+|+....
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 366778888888899999999999999866 78888765 354 468999999998754
No 113
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=90.87 E-value=1 Score=49.25 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChh
Q 010972 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 219 (496)
Q Consensus 162 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~ 219 (496)
..+...|.+.+++.|++|+.+++|+++..+++ |+|.||.. +|+ .+.|+.||+|+...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 34778898888889999999999999988433 78888865 353 57899999999664
No 114
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=90.78 E-value=0.91 Score=48.12 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEEeC--C--eEEecCEEEEcCChhh
Q 010972 162 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGIST 220 (496)
Q Consensus 162 ~~l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~~~--G--~~~~Ad~VV~A~p~~~ 220 (496)
..+.+.|.+.+++ .|++|+.++.|++|..++ |++.+|.+. + ..+.|+.||+|+....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 3477888888887 689999999999998765 678777662 3 3689999999998865
No 115
>PRK07512 L-aspartate oxidase; Provisional
Probab=90.73 E-value=0.69 Score=49.32 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=46.0
Q ss_pred hhhhHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEecCEEEEcCChhh
Q 010972 161 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 161 ~~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~Ad~VV~A~p~~~ 220 (496)
+..+.++|.+.+++. |++|+.+++|++|..++ |+|.+|.+ +++ .+.|+.||+|+....
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 334788888888765 89999999999998765 77888776 333 589999999998753
No 116
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=90.64 E-value=0.75 Score=48.62 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=42.2
Q ss_pred hHHHHHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEE---eC-Ce--EEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV---CG-KE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~---~~-G~--~~~Ad~VV~A~p~~~ 220 (496)
+.++|.+.+.+ .|++|+++++|+.|..+++ +.+. |+ ++ |+ ++.||.||+|+..+.
T Consensus 186 L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 186 LTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGWE-VTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCEE-EEEEecCCCceEEEEcCEEEECCCcch
Confidence 67788888754 4899999999999988733 4443 43 33 42 689999999999987
No 117
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=90.56 E-value=1.1 Score=49.09 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 161 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+..+.++|.+.+.+.|++|+.++.|+++..+++ |+|.||.. +|+ .+.|+.||+|+....
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 334778888888888999999999999887643 68888865 353 579999999998754
No 118
>PRK07395 L-aspartate oxidase; Provisional
Probab=90.54 E-value=0.91 Score=48.87 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEecCEEEEcCChh
Q 010972 162 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 219 (496)
Q Consensus 162 ~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~Ad~VV~A~p~~ 219 (496)
..+.++|.+.+++. |++|++++.|+++..++++|+|.||.. +|+ .+.|+.||+|+...
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 34788888888654 899999999999988632267888866 454 47899999999874
No 119
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.29 E-value=1.1 Score=48.11 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 162 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
..+.+.|.+.+++.|++|++++.|+++..+++ ++|.+|.. +|+ .+.|+.||+|+....
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 34778888888888999999999999988763 45888753 343 589999999998754
No 120
>PRK06116 glutathione reductase; Validated
Probab=90.25 E-value=0.91 Score=47.51 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCCh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~ 218 (496)
+.+.+.+.+++.|.+|++++.|++|+.+++ +.+. |.+ +|+++.+|.||+++..
T Consensus 210 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~-v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 210 IRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSLT-LTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceEE-EEEcCCcEEEeCEEEEeeCC
Confidence 667788888899999999999999987653 4343 555 6778999999999865
No 121
>PRK07190 hypothetical protein; Provisional
Probab=90.21 E-value=1.1 Score=47.42 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhH-HHhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~-~~Ll 225 (496)
+-+.|.+.+++.|++|+++++|++|+.+++ .+. +++ +|+++.|+.||.|...... .+.+
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~v~-v~~~~g~~v~a~~vVgADG~~S~vR~~l 171 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQA--GCL-TTLSNGERIQSRYVIGADGSRSFVRNHF 171 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--eeE-EEECCCcEEEeCEEEECCCCCHHHHHHc
Confidence 555666778888999999999999998774 354 344 5778999999999998763 4444
No 122
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=90.21 E-value=0.92 Score=46.55 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+.+.|++|+.+++|++|+.++ +.+. |++ +|+++.||.||.|...+.
T Consensus 113 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 113 LINALRKRAEALGIDLREATSVTDFETRD--EGVT-VTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEE-EEECCCCEEEeCEEEEcCCCCh
Confidence 67778888888899999999999998776 4454 555 677899999999998764
No 123
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=90.19 E-value=0.69 Score=46.80 Aligned_cols=51 Identities=18% Similarity=0.127 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhH
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~ 221 (496)
+...|.+.+.+. |++|+.+++|++|+. + .|+++++++.||+||+|+.++..
T Consensus 147 ~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~---~v~t~~g~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 147 AIPALAAYLAEQHGVEFHWNTAVTSVET----G---TVRTSRGDVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHhcCCCEEEeCCeEEEEec----C---eEEeCCCcEEeCEEEECCCCChh
Confidence 567777777665 999999999999952 2 35665446789999999998753
No 124
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=90.18 E-value=0.87 Score=49.02 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=42.1
Q ss_pred hHHHHHHHHHh---c-CCEEEcCceeeeEEecCCCCeEEEEEe---C---------------C-eEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRT---R-GCEFLDGRRVTDFIYDEERCCISDVVC---G---------------K-ETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~---~-G~~I~l~~~V~~I~~~~~~g~v~~V~~---~---------------G-~~~~Ad~VV~A~p~~~ 220 (496)
+.++|.+.+++ . |++|+++++|+++..++ |+|+||.. . + ..+.|+.||+|+.-..
T Consensus 150 ~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~ 227 (549)
T PRK12834 150 VVEPFERRVREAAARGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG 227 (549)
T ss_pred HHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence 66777766542 3 58999999999999865 78999974 1 1 2578999999997754
No 125
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=90.16 E-value=0.95 Score=39.85 Aligned_cols=41 Identities=32% Similarity=0.333 Sum_probs=30.2
Q ss_pred cCCEEE-cCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCCh
Q 010972 175 RGCEFL-DGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (496)
Q Consensus 175 ~G~~I~-l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~ 218 (496)
.|.+|. ...+|+.|...++ ... |++ +|..+.||+||+|+..
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~--~~~-v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDD--GYR-VVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCC--cEE-EEECCCCEEEeCEEEECCCC
Confidence 354443 5779999999874 343 444 7888999999999864
No 126
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=89.97 E-value=1.1 Score=47.90 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEecC-EEEEcCChhh
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~Ad-~VV~A~p~~~ 220 (496)
+..++.+.+.+. |++|+++++|++|..++ |+|.+|.. +|+ ++.|+ .||+|+....
T Consensus 175 l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 175 LIGRFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 667777776654 89999999999998875 78988876 343 57886 7999997753
No 127
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.85 E-value=1 Score=34.48 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe
Q 010972 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 202 (496)
Q Consensus 161 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~ 202 (496)
..-+.+.+.+.+++.|.+|++|+.|++|+.+++ + +. |++
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~ 77 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTL 77 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEE
Confidence 333667778889999999999999999999885 4 66 666
No 128
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=89.62 E-value=0.84 Score=46.65 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCe-EEecCEEEEcCChh
Q 010972 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGIS 219 (496)
Q Consensus 162 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~-~~~Ad~VV~A~p~~ 219 (496)
..+.+...+.++++|++|++|++|++|+.++ |+ ..+|+ ++.++.||.|+...
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~--~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VT--LKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EE--EccCCeeEecCEEEEcCCCc
Confidence 4467777788999999999999999997532 42 22455 59999999998764
No 129
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=89.55 E-value=0.8 Score=44.80 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=42.5
Q ss_pred HHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe---CCe----EEecCEEEEcCChhhHHHhhcc
Q 010972 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE----TYSAGAVVLAVGISTLQELIKN 227 (496)
Q Consensus 168 L~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G~----~~~Ad~VV~A~p~~~~~~Ll~~ 227 (496)
|...++..+.+|++++.|++|..+++++++++|+. ++. .+.++.||+|..+-...+||-.
T Consensus 199 L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~ 265 (296)
T PF00732_consen 199 LPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLR 265 (296)
T ss_dssp HHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHH
T ss_pred cchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcc
Confidence 33333334889999999999977633378999987 232 4678999999988776666543
No 130
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.52 E-value=1.2 Score=46.52 Aligned_cols=53 Identities=26% Similarity=0.259 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+++++++|++|..++ +.+. +..+|+++.+|.||+|+...
T Consensus 200 ~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v~-v~~~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 200 VAALAKQYMEEDGITFLLNAHTTEVKNDG--DQVL-VVTEDETYRFDALLYATGRK 252 (438)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEEE-EEECCeEEEcCEEEEeeCCC
Confidence 55566677888999999999999998754 4453 55577889999999987653
No 131
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.52 E-value=1.5 Score=47.67 Aligned_cols=60 Identities=28% Similarity=0.352 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHHHhcCCEEEcCceeeeEEecCC--CCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 161 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~--~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+..+.+.|.+.+++.|++|..++.|++|..+++ +|+|.||.. +|+ .+.|+.||+|+....
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 344788898888888999999999999987642 146888865 344 578999999998754
No 132
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.51 E-value=1.1 Score=46.06 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhhc
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll~ 226 (496)
+.+.|.+.+++.|++|+.+++|++|+.++ +.+. |++ +|+++.||.||.|...+. +.+++.
T Consensus 114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 114 VQDALLERLHDSDIGLLANARLEQMRRSG--DDWL-LTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 56677777878899999999999999876 3454 555 577899999999999875 455553
No 133
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=89.40 E-value=1.1 Score=45.83 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+++.|++|+.+++|++|+.++ +.+. |++ +|+++.||.||.|...+.
T Consensus 115 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 115 LVDRLWAALHAAGVQLHCPARVVALEQDA--DRVR-LRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 67778888888899999999999999876 4454 665 577899999999998865
No 134
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=89.35 E-value=1.2 Score=47.38 Aligned_cols=55 Identities=24% Similarity=0.167 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
.+...+++.+++.|++|+.+++|++|..++ +.+ +|++ +|+ ++.|+.||.|+.++.
T Consensus 156 rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 156 RLVVLNARDAAERGAEILTRTRVVSARREN--GLW-HVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEE-EEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 356667777888899999999999998765 444 4554 243 689999999999976
No 135
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=89.32 E-value=1.2 Score=46.59 Aligned_cols=54 Identities=26% Similarity=0.373 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.+.+.+++.|.+|+++++|++|..+ +++..+.++++++.+|.||++++...
T Consensus 193 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~~~~~i~~d~vi~a~G~~p 246 (444)
T PRK09564 193 ITDVMEEELRENGVELHLNEFVKSLIGE---DKVEGVVTDKGEYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEecC---CcEEEEEeCCCEEEcCEEEECcCCCc
Confidence 6667778888999999999999999643 34555667777899999999988643
No 136
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=89.32 E-value=0.8 Score=47.02 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHHHh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL 224 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~L 224 (496)
+.+.+...+++.|+++++++.|.+++-+.+ |++..|.+ +|.++.||.||+.+...-...+
T Consensus 257 i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~ 317 (478)
T KOG1336|consen 257 IGQFYEDYYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPNTSF 317 (478)
T ss_pred HHHHHHHHHHhcCeEEEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeecccccccc
Confidence 566677788999999999999999998776 78888887 6899999999998877544433
No 137
>PRK14694 putative mercuric reductase; Provisional
Probab=88.95 E-value=1.3 Score=46.68 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++++.|++|+.++ +.+ .+.++++++.+|.||+++...
T Consensus 220 ~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~ 272 (468)
T PRK14694 220 VGEAIEAAFRREGIEVLKQTQASEVDYNG--REF-ILETNAGTLRAEQLLVATGRT 272 (468)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEECCCEEEeCEEEEccCCC
Confidence 66778888889999999999999998765 434 355666679999999998654
No 138
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.83 E-value=1.2 Score=46.35 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++++.|++|..++ +.+. +.++++++.+|.||+++...
T Consensus 201 ~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v~-v~~~~g~i~~D~vl~a~G~~ 253 (441)
T PRK08010 201 IADNIATILRDQGVDIILNAHVERISHHE--NQVQ-VHSEHAQLAVDALLIASGRQ 253 (441)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEE-EEEcCCeEEeCEEEEeecCC
Confidence 66777888889999999999999998765 4453 55554568999999997653
No 139
>PRK14727 putative mercuric reductase; Provisional
Probab=88.61 E-value=1.4 Score=46.66 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.+.+.+++.|++|+++++|++|+.++ +.+. |.++++++.+|.||++++...
T Consensus 230 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~~-v~~~~g~i~aD~VlvA~G~~p 283 (479)
T PRK14727 230 LGETLTACFEKEGIEVLNNTQASLVEHDD--NGFV-LTTGHGELRAEKLLISTGRHA 283 (479)
T ss_pred HHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEEE-EEEcCCeEEeCEEEEccCCCC
Confidence 56677788888999999999999998765 3343 555555789999999998754
No 140
>PRK08275 putative oxidoreductase; Provisional
Probab=88.59 E-value=1.5 Score=47.18 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+++.|++|+.++.|++|..+++ |++.||.. +|+ .+.|+.||+|+....
T Consensus 139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 139 IKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 778888888888999999999999998633 67888764 354 578999999998753
No 141
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=88.51 E-value=1.3 Score=45.05 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=45.8
Q ss_pred hHHHHHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+.+.|.+.+.+ .|++++++++|++|+.++ +.++ |++ +|+++.||.||.|.+.+. +.+.+
T Consensus 107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 107 LGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVR-VTLDNGQQLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred HHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEeeEEEEecCCChHHHHHc
Confidence 66778887777 499999999999998776 4454 555 577899999999999875 34444
No 142
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=88.28 E-value=0.78 Score=48.95 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=64.5
Q ss_pred hcCCCcccccHHHHHHHHHHHHHhccCCcceEEecCC-ch-hhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEE
Q 010972 123 GLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGT-LR-EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDV 200 (496)
Q Consensus 123 ~~~~~p~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~GG-~~-~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V 200 (496)
.++...+-+|...+...+-.+-.... -..++.|..| |. ..++++|+..+++.|+.|.-|++|++|....| .+.+|
T Consensus 147 a~g~e~~lLsPee~~~~~pLLn~d~v-~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~--~~~gV 223 (856)
T KOG2844|consen 147 AHGVESELLSPEETQELFPLLNVDDV-YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD--KFGGV 223 (856)
T ss_pred hccceeeecCHHHHHHhCcccchhHh-eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC--Cccce
Confidence 35556666676655443332100100 1223445433 22 23788999999999999999999999999874 35589
Q ss_pred EeCCeEEecCEEEEcCChhh
Q 010972 201 VCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 201 ~~~G~~~~Ad~VV~A~p~~~ 220 (496)
.+.-+.+++.+||-|+..|.
T Consensus 224 eT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 224 ETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred eccCcceecceEEechhHHH
Confidence 88655689999999999987
No 143
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.25 E-value=1.6 Score=45.81 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CC---eEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G---~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++|++|++|+.++ +.+. +.+ +| +++.+|.||++++..
T Consensus 215 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~-v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 215 ISKLAERALKKRGIKIKTGAKAKKVEQTD--DGVT-VTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEEeCCeeEEEEeCEEEEeeCCc
Confidence 66677788889999999999999998765 3453 444 44 579999999998764
No 144
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=87.63 E-value=1.6 Score=45.74 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|++|++++.|++|+.++ +.+. +++ +|+++++|.||+|+...
T Consensus 218 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~-v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 218 ISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGVI-VHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeEE-EEECCCCEEEeCEEEEeecCC
Confidence 66778888889999999999999998765 3343 445 57789999999998764
No 145
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=87.62 E-value=1.8 Score=44.08 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.+.+.+++.|.+|+++++|++|..++ +.+ .|.+ +|+++.+|.||+|+....
T Consensus 185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 185 VSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGI-RATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEccC--CEE-EEEEcCCcEEECCEEEECcCCCc
Confidence 45567777888999999999999998765 334 3555 678899999999987643
No 146
>PRK09897 hypothetical protein; Provisional
Probab=87.39 E-value=1.9 Score=46.13 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcC--CEEEcCceeeeEEecCCCCeEEEEEe-C-CeEEecCEEEEcCCh
Q 010972 165 FEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGI 218 (496)
Q Consensus 165 ~~aL~~~l~~~G--~~I~l~~~V~~I~~~~~~g~v~~V~~-~-G~~~~Ad~VV~A~p~ 218 (496)
.+.+.+.+++.| ++|+.+++|+.|+.++ +.+. |++ + |+.+.||.||+|+..
T Consensus 110 f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~-V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 110 FLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVM-LATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEE-EEECCCCeEEEcCEEEECCCC
Confidence 344555566666 6888999999998876 4454 665 4 467899999999985
No 147
>PRK07804 L-aspartate oxidase; Provisional
Probab=87.24 E-value=1.7 Score=46.76 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-------C-C-eEEecCEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------G-K-ETYSAGAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-------~-G-~~~~Ad~VV~A~p~~~ 220 (496)
.+.+.|.+.+++.|++|+.++.|++|..+++ |+|.+|.+ + + ..+.|+.||+|+....
T Consensus 145 ~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 145 EVQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 4778898888888999999999999988654 57877754 1 2 3689999999998754
No 148
>PLN02507 glutathione reductase
Probab=87.23 E-value=1.9 Score=45.91 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++++.|++|+.++ +.+. |.+ +|+++.+|.||++++..
T Consensus 246 ~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 246 MRAVVARNLEGRGINLHPRTNLTQLTKTE--GGIK-VITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeEE-EEECCCcEEEcCEEEEeecCC
Confidence 56667778888999999999999998755 3343 555 57789999999998754
No 149
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.21 E-value=2.7 Score=45.99 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhc--------C-----CEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChh
Q 010972 163 KIFEPWMDSMRTR--------G-----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 219 (496)
Q Consensus 163 ~l~~aL~~~l~~~--------G-----~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~ 219 (496)
.+.++|.+.+++. | ++|..++.|++|..++ |++.||.. +|+ .+.|+.||+|+...
T Consensus 139 ~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 212 (626)
T PRK07803 139 ELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAPAVVLATGGI 212 (626)
T ss_pred HHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcCeEEECCCcc
Confidence 3778888877766 7 8999999999999765 77888754 353 57999999999873
No 150
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=87.18 E-value=2.2 Score=44.76 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CC--eEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G--~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++++.|++|+.++ +++. +.+ +| .++.+|.||++++..
T Consensus 213 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 213 VSKVVAKALKKKGVKILTNTKVTAVEKND--DQVV-YENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEeCCcEEEEEeCEEEEecCCc
Confidence 56677788888999999999999998765 4454 554 45 479999999998754
No 151
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.12 E-value=2.7 Score=45.61 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 161 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 161 ~~~l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+..+.+.|.+.+.+ .|++|+.++.|++|..++ |++.||.. +|+ .+.|+.||+|+....
T Consensus 136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 136 GFYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 33477888887765 589999999999998876 67888754 354 579999999998863
No 152
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=87.12 E-value=1.9 Score=48.88 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
..+.+.+.++++|++|++++.|++|..+++ +.+..|.. +|+++.+|.||++++..-
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCccc
Confidence 445677888899999999999999976432 23344555 688999999999997643
No 153
>PRK06834 hypothetical protein; Provisional
Probab=86.69 E-value=2 Score=45.52 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+-+.|.+.+++.|++|+.+++|++|+.++ +.+. |++ +|++++||.||.|...+. +.+.+
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~-v~~~~g~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDD--TGVD-VELSDGRTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence 55667777888899999999999999877 3454 555 567899999999998865 34443
No 154
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=86.67 E-value=2.1 Score=43.42 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcC-CEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+.+.| ++|+.+++|++|+.++ +.+. |++ +|+++.+|.||.|...+.
T Consensus 108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 108 LQQALWERLQEYPNVTLLCPARVVELPRHS--DHVE-LTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeE-EEECCCCEEEeeEEEEeCCCCC
Confidence 6677888887777 8999999999998876 4464 655 677899999999988764
No 155
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=86.63 E-value=2.1 Score=45.28 Aligned_cols=55 Identities=13% Similarity=0.259 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
.+.+.+.+.+++.|.+|++++.|++|..+++ +.+ .|++ +|+++++|.||+++...
T Consensus 232 ~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 232 TLRKELTKQLRANGINIMTNENPAKVTLNAD-GSK-HVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceE-EEEEcCCCEEEcCEEEEeeCCC
Confidence 3677888889999999999999999987653 323 3555 57789999999988753
No 156
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=86.56 E-value=2.3 Score=46.36 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcC-CEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+++.| ++|+.++.|.+|..++ ++|.+|.. +|+ .+.|+.||+|+....
T Consensus 134 ~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 134 YKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 6677777777766 8999999999998766 67888753 343 689999999999754
No 157
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=86.52 E-value=2.1 Score=45.01 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++++.|++|+.++ +.+. |.+ +|+++.+|.||+++...
T Consensus 220 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 220 AAEVLEEVFARRGMTVLKRSRAESVERTG--DGVV-VTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred HHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEEE-EEECCCcEEEecEEEEeecCC
Confidence 56667788888999999999999998665 3454 554 67789999999987653
No 158
>PRK06184 hypothetical protein; Provisional
Probab=86.42 E-value=2.5 Score=44.94 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCeEEecCEEEEcCChhhH-HHhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGISTL-QELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~~~~Ad~VV~A~p~~~~-~~Ll 225 (496)
+-+.|.+.+.+.|++|+++++|++|+.+++ .|+ +++ ++++++||.||.|...+.. .+.+
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~l 174 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDAD--GVT-ARVAGPAGEETVRARYLVGADGGRSFVRKAL 174 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--cEE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhC
Confidence 555677778788999999999999998764 354 333 3568999999999998763 4444
No 159
>PRK08071 L-aspartate oxidase; Provisional
Probab=86.39 E-value=1.4 Score=47.02 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe---CCe--EEecCEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G~--~~~Ad~VV~A~p~~~ 220 (496)
.+.++|.+.++ .|++|+.++.|++|..++ |++.+|.+ +|+ .+.|+.||+|+....
T Consensus 131 ~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 131 NLLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 36777877765 589999999999998765 67888876 233 679999999997754
No 160
>PRK07045 putative monooxygenase; Reviewed
Probab=86.36 E-value=2.7 Score=42.95 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=45.1
Q ss_pred hHHHHHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHh
Q 010972 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQEL 224 (496)
Q Consensus 164 l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~L 224 (496)
|.+.|.+.+.+ .|++|+++++|+.|+.+++ +.++.|++ +|+++.+|.||.|..... +++.
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence 55566666654 4789999999999998765 44445666 577899999999999875 4553
No 161
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=86.30 E-value=2.5 Score=43.35 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.+.+.+++.|.+|+++++|++|.. + +.+. |.+ +|+++.+|.||+++....
T Consensus 188 ~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~-v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 188 VQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKVE-LTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEEE-EEECCCCEEECCEEEECCCCCh
Confidence 445567777889999999999999975 3 3343 555 678899999999987643
No 162
>PRK13748 putative mercuric reductase; Provisional
Probab=86.27 E-value=2.2 Score=46.07 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++++.|++|+.++ +.+. +.++++++.+|.||+|+...
T Consensus 312 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~~-v~~~~~~i~~D~vi~a~G~~ 364 (561)
T PRK13748 312 IGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEFV-LTTGHGELRADKLLVATGRA 364 (561)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEE-EEecCCeEEeCEEEEccCCC
Confidence 56677788888999999999999998765 4443 55555579999999998764
No 163
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=86.01 E-value=3.7 Score=44.54 Aligned_cols=64 Identities=23% Similarity=0.199 Sum_probs=47.9
Q ss_pred EecCCchhhhHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEcCChhh
Q 010972 155 WCRGTLREKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (496)
Q Consensus 155 ~~~GG~~~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G--~~~~Ad~VV~A~p~~~ 220 (496)
+..++.+..|.++|.+.+.+. |+++..++.|++|..++ |+|.||.. +| ..+.|+.||+|+....
T Consensus 125 ~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 125 FAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred ecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 333333444888888877664 78999999999999876 78888764 35 3679999999998754
No 164
>PLN02815 L-aspartate oxidase
Probab=85.94 E-value=3 Score=45.28 Aligned_cols=58 Identities=12% Similarity=0.221 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhc-CCEEEcCceeeeEEecCCCC--eEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 163 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC--CISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 163 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g--~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
.+.++|.+.+++. |++|+.+++|++|..+++++ +|.||.. +|+ .+.|+.||+|+.-..
T Consensus 156 ~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 156 EIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 3778888887665 88999999999999864423 3778765 343 568999999998653
No 165
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=85.87 E-value=2.5 Score=44.24 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|+++++++.|++|..+++ .+. |.+ +|+++.+|.||+|++..
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~~-v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 209 MRALLARNMEGRGIRIHPQTSLTSITKTDD--GLK-VTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--eEE-EEEcCCcEeecCEEEEeeCCC
Confidence 556677788889999999999999987553 343 444 67789999999998753
No 166
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=85.32 E-value=2.4 Score=45.38 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=38.2
Q ss_pred CCEEEcCceeeeEEecCCC-CeEEEEEe----CCe--EEecCEEEEcCChhhHHHhh
Q 010972 176 GCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGISTLQELI 225 (496)
Q Consensus 176 G~~I~l~~~V~~I~~~~~~-g~v~~V~~----~G~--~~~Ad~VV~A~p~~~~~~Ll 225 (496)
..+|++|+.|++|+.++++ ++|++|.. +|+ ++.|+.||+|+..=...+||
T Consensus 228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 3799999999999987643 46777754 243 58999999999876666654
No 167
>PRK08163 salicylate hydroxylase; Provisional
Probab=85.22 E-value=2.8 Score=42.81 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhcC-CEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhH
Q 010972 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (496)
Q Consensus 164 l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~ 221 (496)
+.+.|.+.+.+.| ++|++++.|++|+.++ +.+. |++ +|+++.||.||.|...+..
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVT-VFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceE-EEEcCCCEEecCEEEECCCcChH
Confidence 5566777776665 7999999999998766 4454 555 6778999999999988754
No 168
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=85.12 E-value=3.3 Score=43.52 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe---CC--eEEecCEEEEcCCh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGI 218 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G--~~~~Ad~VV~A~p~ 218 (496)
+.+.+.+.+++.|.+|++|++|++|..++ +.+. +++ +| +++++|.||+++..
T Consensus 215 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~-v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 215 VSKEIAKQYKKLGVKILTGTKVESIDDNG--SKVT-VTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeEE-EEEEecCCCeEEEEeCEEEECcCc
Confidence 66778888889999999999999998654 3343 332 45 37999999999865
No 169
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=85.07 E-value=4 Score=44.28 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 161 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 161 ~~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+..|.+.|.+.+.+. +++|+.++.|++|..++ |+|.||.. +|+ .+.|+.||+|+....
T Consensus 132 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 132 GFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 334777787777664 78999999999999876 67887754 353 689999999998744
No 170
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=85.03 E-value=3.1 Score=43.60 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCC--eEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G--~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++++.|++|+.++ +.+. +..+| .++.+|.||+|+...
T Consensus 213 ~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v~-~~~~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 213 IAHILREKLENDGVKIFTGAALKGLNSYK--KQAL-FEYEGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEEE-EEECCceEEEEeCEEEEecCCc
Confidence 66677788888999999999999998654 3342 44455 368999999998753
No 171
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=84.94 E-value=3.2 Score=43.47 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CC-eEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G-~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.++++|+.|++|..+++ +.+ .|.+ +| +++.+|.||++++..
T Consensus 209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKLSKPVKVEKTVE-GKL-VIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceE-EEEECCCcEEEEcCEEEEeeCCC
Confidence 566777888889999999999999987543 333 3555 56 579999999998764
No 172
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=84.70 E-value=3.1 Score=42.50 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+.+.|.+.+++. |++|+.++.|++|+.++ +.+. |++ +|++++||.||.|...+. +++.+
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S~vR~~~ 175 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDD--DGWE-LTLADGEEIQAKLVIGADGANSQVRQMA 175 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEE-EEECCCCEEEeCEEEEeCCCCchhHHHc
Confidence 556677777666 89999999999998776 3343 555 567899999999999875 34444
No 173
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=84.67 E-value=3.7 Score=43.00 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+-|.+.+++.|++++.++ |..+..+++ |.+.+|++ +|++++||.||=|+....
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccc
Confidence 55567777788899999885 778887765 77888888 688999999999998754
No 174
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=83.93 E-value=3.7 Score=43.28 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-C--C--eEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~--G--~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|+++++|++|+.++ +.+. |.. + | +++++|.||++++..
T Consensus 226 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 226 VAKEAAKAFTKQGLDIHLGVKIGEIKTGG--KGVS-VAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHcCcEEEeCcEEEEEEEcC--CEEE-EEEEeCCCceeEEEcCEEEEccCCc
Confidence 66777788888999999999999998765 3443 443 3 3 468999999998753
No 175
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=83.26 E-value=3.3 Score=44.69 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+...+.+.+++. |.+++ ...|+.+..+++ +++.+|.+ +|..+.||.||+|+.++.
T Consensus 98 y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 98 YRKAMRNALENQPNLSLF-QGEVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHcCCCcEEE-EeEEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCccc
Confidence 455666777776 55665 557888876533 56888888 467899999999999985
No 176
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=83.22 E-value=3.1 Score=46.85 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
..+.+.+.++++|.+|++++.|++|..++ ++.+|++ +|+++.+|.||++++..
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~---~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVGAT---KADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEcCC---ceEEEEECCCCEEEcCEEEECCCCC
Confidence 34556777888999999999999997543 3555666 68899999999998764
No 177
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=83.18 E-value=5.2 Score=40.02 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=58.9
Q ss_pred ccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCC----cceEEecCCchhhhHHH
Q 010972 92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKN----FDLVWCRGTLREKIFEP 167 (496)
Q Consensus 92 ~~d~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~----~~~~~~~GG~~~~l~~a 167 (496)
.+|+.|+.||+....+...+. .+|..++. -.. =-|+..+..++-++. .+-++ +.+-+-+=...+.++.+
T Consensus 160 ~L~~~tI~d~Fse~FF~sNFW-~yW~tmFA----Fek-WhSa~EmRRY~mRfi-hhi~gl~dfs~lkftkyNQYeSlvlP 232 (587)
T COG4716 160 KLDDLTIEDWFSEDFFKSNFW-YYWQTMFA----FEK-WHSAFEMRRYMMRFI-HHISGLPDFSALKFTKYNQYESLVLP 232 (587)
T ss_pred hcCCccHHHhhhHhhhhhhHH-HHHHHHHh----hhH-HHHHHHHHHHHHHHH-HHhcCCCcchhhcccccchHHHHHHH
Confidence 589999999999876655543 33433322 121 135555554444443 11111 11222222233348899
Q ss_pred HHHHHHhcCCEEEcCceeeeEEecCC
Q 010972 168 WMDSMRTRGCEFLDGRRVTDFIYDEE 193 (496)
Q Consensus 168 L~~~l~~~G~~I~l~~~V~~I~~~~~ 193 (496)
|...|+.+|+++.+++.|+.|..+..
T Consensus 233 li~yL~~H~Vdf~~~~~Vedi~v~~t 258 (587)
T COG4716 233 LITYLKSHGVDFTYDQKVEDIDVDDT 258 (587)
T ss_pred HHHHHHHcCCceEeccEEeeeeeccC
Confidence 99999999999999999999998764
No 178
>PRK06370 mercuric reductase; Validated
Probab=82.88 E-value=4.4 Score=42.54 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-C-CeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~-G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|+++++|.+|+.+++ +....+.. + +.++.+|.||+|+...
T Consensus 214 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 214 VAAAVREILEREGIDVRLNAECIRVERDGD-GIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 556777888889999999999999987652 22111222 2 4579999999998753
No 179
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=82.82 E-value=2.2 Score=45.69 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=38.8
Q ss_pred hcCCEEEcCceeeeEEecCCCCeEEEEEe--CCe---EEecCEEEEcCChhhHHHhh
Q 010972 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE---TYSAGAVVLAVGISTLQELI 225 (496)
Q Consensus 174 ~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~---~~~Ad~VV~A~p~~~~~~Ll 225 (496)
+.+.+|++++.|++|..++ +++++|++ +|+ .+.++.||++..+-...+||
T Consensus 206 r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred CCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 4468999999999999976 78999987 332 35789999999885555554
No 180
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=82.69 E-value=3.1 Score=43.13 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCCh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~ 218 (496)
.+.+.+.+.++++|++|+++++|++|.. +.+. ..+|+++.+|.||++++.
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~----~~v~--~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD----KEVV--LKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC----CEEE--ECCCCEEEccEEEEccCC
Confidence 3667778889999999999999999863 2232 236889999999998764
No 181
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=82.65 E-value=1.6 Score=44.12 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=51.0
Q ss_pred cCCchhhhHHHHHH----HHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHHHhhcc
Q 010972 157 RGTLREKIFEPWMD----SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKN 227 (496)
Q Consensus 157 ~GG~~~~l~~aL~~----~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~Ll~~ 227 (496)
++.|+..|++-|.+ .+++.|++|+-|+.|+++.... +.+. +.+ ||.++..|.||+|+.-.--.+|...
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~-lkL~dG~~l~tD~vVvavG~ePN~ela~~ 456 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLV-LKLSDGSELRTDLVVVAVGEEPNSELAEA 456 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc--cceE-EEecCCCeeeeeeEEEEecCCCchhhccc
Confidence 47788877777764 4777899999999999998876 4454 455 7889999999999876544444433
No 182
>PRK09077 L-aspartate oxidase; Provisional
Probab=82.53 E-value=5.5 Score=42.74 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=47.3
Q ss_pred EecCCchhhhHHHHHHHHHhc-CCEEEcCceeeeEEecC----CCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 155 WCRGTLREKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDE----ERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 155 ~~~GG~~~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~----~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+..+..+..+...|.+.+.+. |++|+.++.|.++..++ ++|+|.+|.. +|+ .+.|+.||+|+....
T Consensus 131 ~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 131 HAADATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 333334444777888877665 79999999999998753 1157888865 243 579999999998754
No 183
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=82.49 E-value=4.1 Score=40.46 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe---CCe--EEecCEEEEcCChhh-HHHhhc
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST-LQELIK 226 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G~--~~~Ad~VV~A~p~~~-~~~Ll~ 226 (496)
+-+.|.+.+++.|++|+++++|..++.+++ .++.+.. +|+ +++||.||-|-..+. +++.+.
T Consensus 113 l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 113 LDRALREEAEERGVDIRFGTRVVSIEQDDD--GVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHhhhhhhhhhhhhheeeeeccccccccc--ccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 566778888888999999999999998774 4543333 243 689999999998876 444443
No 184
>PRK07588 hypothetical protein; Provisional
Probab=82.39 E-value=3.5 Score=42.16 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQEL 224 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~L 224 (496)
|.+.|.+.+. .|++|+++++|++|+.++ +.|. |++ +|+++.+|.||.|...+. +++.
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~ 163 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHR--DGVR-VTFERGTPRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEE-EEECCCCEEEeCEEEECCCCCccchhh
Confidence 4445555443 378999999999999876 4464 555 677889999999998865 3443
No 185
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=82.31 E-value=4.4 Score=39.37 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.++++ +.|++|..++ +.+. |.+ +|.++.+|.||+|+...
T Consensus 59 ~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~~~-v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 59 LMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RPFK-VKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHcCCeEEE-EEEEEEEecC--CeeE-EEeCCCCEEEeCEEEECCCCC
Confidence 666777778888999999 8999998865 3343 555 46789999999999874
No 186
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=82.23 E-value=4.5 Score=41.16 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhcC-CEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+.+.|.+.+++.| ++++ ++.|++|+.++ +.+. |++ +|+++.||.||.|...+. +++.+
T Consensus 113 l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 113 IERALWAALRFQPNLTWF-PARAQGLEVDP--DAAT-LTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEE-EEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 6677888888887 8888 99999998766 3454 666 566899999999998864 34443
No 187
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=82.13 E-value=3.8 Score=42.49 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.+.+.+++.|.++++++.|++|..++ .+ .+..+|+++.+|.||++++...
T Consensus 181 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~---~~-v~~~~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 181 MNQIVEEELKKHEINLRLNEEVDSIEGEE---RV-KVFTSGGVYQADMVILATGIKP 233 (427)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEecCC---CE-EEEcCCCEEEeCEEEECCCccC
Confidence 55667777888999999999999997543 33 1334678899999999988753
No 188
>PTZ00052 thioredoxin reductase; Provisional
Probab=82.04 E-value=4.3 Score=43.13 Aligned_cols=54 Identities=22% Similarity=0.200 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.+.+.+++.|.++++++.|++|+..+ +.+. |.+ +|+++.+|.||+++....
T Consensus 224 ~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 224 CSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKIK-VLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred HHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEcCEEEEeeCCCC
Confidence 56778888889999999999999998755 3343 554 577899999999987643
No 189
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.95 E-value=4.4 Score=43.24 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+++++++|++|..++ +.+ .|.+ +|+++.+|.+|+|+...
T Consensus 269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~-~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 269 LAANLEEHIKQYPIDLMENQRAKKIETED--GLI-VVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHhCCeEEcCCEEEEEEecC--CeE-EEEECCCCEEEeCEEEECCCCC
Confidence 56677777888899999999999998765 334 3555 56789999999999875
No 190
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=81.82 E-value=5.5 Score=43.30 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=44.3
Q ss_pred hhhhHHHHHHHHHhcC----CEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 161 REKIFEPWMDSMRTRG----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 161 ~~~l~~aL~~~l~~~G----~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+..+...|.+.+++.+ .+|..++.|+++..+++ |+|.||.. +|+ .+.|+.||+|+.-..
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 3347777877766543 67999999999998644 78999876 233 478999999998754
No 191
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=81.75 E-value=3.6 Score=48.50 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=43.2
Q ss_pred hHHHHHHHHHh---cCCEEEcCceeeeEEecCC----C---CeEEEEEe------CCe--EEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRT---RGCEFLDGRRVTDFIYDEE----R---CCISDVVC------GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~---~G~~I~l~~~V~~I~~~~~----~---g~v~~V~~------~G~--~~~Ad~VV~A~p~~~ 220 (496)
+...|.+.+++ .|++|+++++|+++..+++ | ++|+||.. +|+ .+.|+.||+|+.-..
T Consensus 546 i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~ 620 (1167)
T PTZ00306 546 IMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFS 620 (1167)
T ss_pred HHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcc
Confidence 56677777765 3899999999999998642 1 27888875 243 579999999998754
No 192
>PTZ00058 glutathione reductase; Provisional
Probab=81.12 E-value=5.2 Score=43.16 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-C-CeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~-G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++++.|++|+.+++ +.+. +.. + ++++.+|.||+++...
T Consensus 280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~-v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 280 IINELENDMKKNNINIITHANVEEIEKVKE-KNLT-IYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEE-EEECCCCEEEECCEEEECcCCC
Confidence 567778888889999999999999986543 3343 333 4 3579999999998753
No 193
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=81.09 E-value=5.7 Score=41.84 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CC--eEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G--~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++++.|++|...++ +++..+.+ +| +++.+|.||+|+...
T Consensus 223 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 223 LSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 566777888889999999999999986211 23443433 55 368999999998774
No 194
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.08 E-value=5.1 Score=42.78 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+++++++|++|...+ +.+ .|.+ +|+++.||.||+|+...
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~-~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAA--GLI-EVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeE-EEEECCCCEEEcCEEEECCCCC
Confidence 66778888888899999999999998865 334 3556 56789999999999984
No 195
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=81.03 E-value=5.4 Score=41.88 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--C--CeEEecCEEEEcCCh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KETYSAGAVVLAVGI 218 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~--G~~~~Ad~VV~A~p~ 218 (496)
+.+.+.+.+++.|.+|++++.|++|+.++ +.+ .+.+ + ++++.+|.||+|+..
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~~-~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 209 ISAAVEEALAEEGIEVVTSAQVKAVSVRG--GGK-IITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CEE-EEEEEeCCCceEEEeCEEEEeECC
Confidence 55667777888999999999999998765 323 2433 2 357999999999865
No 196
>PRK09126 hypothetical protein; Provisional
Probab=80.27 E-value=5.6 Score=40.54 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=42.7
Q ss_pred hHHHHHHHHH-hcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~-~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+.+.|.+.+. ..|++|+.+++|++++.++ +.+. |++ +|+++.||.||.|..... +.+.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQ-VTLANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEE-EEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence 4455555553 4689999999999998766 4453 555 577899999999998864 34444
No 197
>PLN02463 lycopene beta cyclase
Probab=80.22 E-value=5.4 Score=41.68 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+.+.|++++ ++.|++|+.++ +++ .|++ +|+++.||.||.|+....
T Consensus 116 L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~-~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 116 LKSKMLERCIANGVQFH-QAKVKKVVHEE--SKS-LVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeE-EEEECCCCEEEcCEEEECcCCCc
Confidence 55667777777899986 67999999876 444 4666 567899999999998753
No 198
>PRK08244 hypothetical protein; Provisional
Probab=79.95 E-value=6.9 Score=41.44 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe---CC-eEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G-~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+-+.|.+.+++.|++|+.+++|++|+.+++ .++ |++ +| ++++||.||.|...+. +.+.+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGD--GVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCC--eEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 455566777778999999999999988773 453 433 35 4799999999998865 44444
No 199
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=79.87 E-value=5.6 Score=40.57 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhH-HHhh
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~-~~Ll 225 (496)
+-..|.+.+++. |.+|+.+++|++++.+++ .+. |++ +|.+++||.||.|...+.. ++.+
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~~~-v~~~~g~~~~~~lvIgADG~~S~vR~~~ 173 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAE--GNR-VTLESGAEIEAKWVIGADGANSQVRQLA 173 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCC--eEE-EEECCCCEEEeeEEEEecCCCchhHHhc
Confidence 444555655543 689999999999998773 354 566 6779999999999998754 4443
No 200
>PRK10262 thioredoxin reductase; Provisional
Probab=79.81 E-value=4.1 Score=40.35 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-C----C--eEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G----K--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~----G--~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.++++++.|++|..++ +++.+|++ + + +++.+|.||+++...
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 45667777888899999999999998654 34555554 1 1 368999999988753
No 201
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=79.70 E-value=6.1 Score=40.16 Aligned_cols=59 Identities=5% Similarity=0.142 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcC-CEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
|.+.|.+.+++.+ .++++++.|++|+.++ +.+. |.+++++++||.||.|-..+. +++.+
T Consensus 106 L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~~~~~adlvIgADG~~S~vR~~l 166 (374)
T PRK06617 106 FKKILLSKITNNPLITLIDNNQYQEVISHN--DYSI-IKFDDKQIKCNLLIICDGANSKVRSHY 166 (374)
T ss_pred HHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEE-EEEcCCEEeeCEEEEeCCCCchhHHhc
Confidence 6667777777765 7899999999998876 3454 666555899999999999875 44444
No 202
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=79.49 E-value=5.4 Score=43.16 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+...+.+.+.+. |.+| +.+.|++|..++ +++.+|.+ +|..+.|+.||+|+....
T Consensus 102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 102 YRAAMREILENQPNLDL-FQGEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHcCCCcEE-EEeEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcch
Confidence 445566666655 6777 577899998876 67888888 577899999999999654
No 203
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=79.13 E-value=6.1 Score=40.25 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+.+.|++++ ++.|..+..+++ + .+.|++ +|++++||.||.|++...
T Consensus 87 l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~-~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 87 LHEELLQKCPEGGVLWL-ERKAIHAEADGV-A-LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHhcCcEEE-ccEEEEEEecCC-c-eeEEEeCCCCEEEeCEEEECCCCch
Confidence 66777777777888886 668888887632 3 334666 466899999999999875
No 204
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=78.66 E-value=6.7 Score=41.52 Aligned_cols=53 Identities=17% Similarity=0.094 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CC---eEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G---~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++++.|++|...+ +.+. |+. +| +++++|.||+++...
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKVK-VTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeEE-EEEecCCcceEEEeCEEEEEecCC
Confidence 56677788889999999999999998765 3343 444 43 479999999998753
No 205
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=78.34 E-value=7.6 Score=40.83 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEE-EEEe--C--CeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVC--G--KETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~-~V~~--~--G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+|++++.|++|+.+++ .+. .+.. + ++++.+|.||+++...
T Consensus 217 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 217 TAKTLQKALTKQGMKFKLGSKVTGATAGAD--GVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHhcCCEEEECcEEEEEEEcCC--eEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 667788888899999999999999987542 332 1221 2 3479999999998754
No 206
>PRK08013 oxidoreductase; Provisional
Probab=78.25 E-value=6.8 Score=40.23 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+-+.|.+.+++. |++|++++.|++|+.+++ .+. |++ +|++++||.||-|-..+. +++.+
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~v~-v~~~~g~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGEN--EAF-LTLKDGSMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--eEE-EEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence 556677777665 789999999999988764 353 555 678899999999999875 44544
No 207
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=77.99 E-value=8.8 Score=41.87 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCC-CeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~-g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+...+...+.+.+++|+.++.|+++..++++ |+|.||.. +|+ .+.|+.||+|+....
T Consensus 128 ~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 128 YKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred HHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 4455666666667899999999999986421 57888875 343 578999999998864
No 208
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=77.84 E-value=6.5 Score=40.05 Aligned_cols=54 Identities=19% Similarity=-0.006 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+.+.|+.++++++|++|+.++ +.+. |++ +|++++||.||.|...+.
T Consensus 113 l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 113 LNRALEARVAELPNITRFGDEAESVRPRE--DEVT-VTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEE-EEECCCCEEEEeEEEEecCCCc
Confidence 66777777777766569999999998876 4454 665 567899999999998864
No 209
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=77.74 E-value=7.1 Score=39.78 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=40.8
Q ss_pred hHHHHHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+.+ .|++|+.+++|++|..++ +.+. |++ +|.++.+|.||.|...+.
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVR-VTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCh
Confidence 44556666655 478999999999998766 4454 666 566899999999998875
No 210
>PLN02546 glutathione reductase
Probab=77.36 E-value=9.1 Score=41.28 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeE-EecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET-YSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~-~~Ad~VV~A~p~~~ 220 (496)
+.+.+.+.+++.|++|++++.|++|...++ +.+ .+.+++++ ..+|.||++++...
T Consensus 295 ~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v-~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 295 VRDFVAEQMSLRGIEFHTEESPQAIIKSAD-GSL-SLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred HHHHHHHHHHHCCcEEEeCCEEEEEEEcCC-CEE-EEEECCeEEEecCEEEEeecccc
Confidence 556677788889999999999999986543 444 35555444 45899999987643
No 211
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=76.63 E-value=8.3 Score=40.30 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=43.7
Q ss_pred CchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCe--EEecCEEEEcCCh
Q 010972 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE--TYSAGAVVLAVGI 218 (496)
Q Consensus 159 G~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~--~~~Ad~VV~A~p~ 218 (496)
+...-+.+.+.+.+++.|.+++++++|++++..++ .+. +++ +|+ +++||.|++|+.-
T Consensus 211 ~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~--~v~-v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 211 GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDD--GVL-VTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCC--eEE-EEEecCCCCEEEeeEEEEccCC
Confidence 33344778888888887889999999999998763 343 555 444 7889999999865
No 212
>PLN02661 Putative thiazole synthesis
Probab=76.60 E-value=9.8 Score=38.28 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=40.3
Q ss_pred hHHHHHHHHH-hcCCEEEcCceeeeEEecCCCCeEEEEEe-------C--C------eEEecCEEEEcCC
Q 010972 164 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC-------G--K------ETYSAGAVVLAVG 217 (496)
Q Consensus 164 l~~aL~~~l~-~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-------~--G------~~~~Ad~VV~A~p 217 (496)
+...|.+.+. ..|.+|+.++.|..+..++ +++.||.+ + + ..+.|++||+|+.
T Consensus 174 ~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 174 FTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 4556776554 4688999999999999876 67888874 1 1 2589999999998
No 213
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=76.52 E-value=8 Score=40.62 Aligned_cols=53 Identities=17% Similarity=-0.070 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCCE--EEcCceeeeEEecCCCCeEEEEEeC--C-e--EEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVCG--K-E--TYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~--I~l~~~V~~I~~~~~~g~v~~V~~~--G-~--~~~Ad~VV~A~p~~ 219 (496)
+.+-|.+.++..|.+ |++|++|++|...+ +++. |++. + . +..+|+||+|+...
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~-V~~~~~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWR-VQSKNSGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEE-EEEEcCCCceEEEEcCEEEEeccCC
Confidence 666777777777876 99999999999876 4553 6552 2 2 45799999999964
No 214
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=76.04 E-value=9.7 Score=40.87 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe---CC--eEEecCEEEEcCChhhH-HHhh
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGISTL-QELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G--~~~~Ad~VV~A~p~~~~-~~Ll 225 (496)
+-+.|.+.+.+. |++|+++++|++|+.+++ .|+ |++ +| ++++||.||-|...+.. ++.+
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDD--GVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTL 180 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--eEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence 444566666554 899999999999998774 354 444 35 47899999999998764 4555
No 215
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=76.02 E-value=8 Score=40.47 Aligned_cols=49 Identities=24% Similarity=0.250 Sum_probs=35.6
Q ss_pred HHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC----------C-----------eEEecCEEEEcCCh
Q 010972 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----------K-----------ETYSAGAVVLAVGI 218 (496)
Q Consensus 169 ~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~----------G-----------~~~~Ad~VV~A~p~ 218 (496)
.+.+++.|++|++++.+++|..+++ |++++|++. | .++.+|.||+|+..
T Consensus 316 ~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 316 IAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred HHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 3557788999999999999976543 567666431 2 25788888888765
No 216
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=75.92 E-value=6.4 Score=40.04 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=36.0
Q ss_pred HHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 170 ~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
+.+++.|.+++++++|++|..++ .. |.++|+++.+|++|+|+...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~~--~~---v~~~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAEA--QV---VKSQGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECCC--CE---EEECCeEEeCCEEEECCCCC
Confidence 33466799999999999998765 32 45678889999999999874
No 217
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=75.71 E-value=8.5 Score=39.52 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+.+.|.+.+.+. |++|+++++|++|+.++ +.+. |++ +|++++||.||.|...+. +++.+
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~lvIgADG~~S~vR~~~ 174 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAW-LTLDNGQALTAKLVVGADGANSWLRRQM 174 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEE-EEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence 445566666554 68999999999998876 3353 665 678899999999999865 44544
No 218
>PRK06996 hypothetical protein; Provisional
Probab=75.46 E-value=8.8 Score=39.36 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-C--C-eEEecCEEEEcCCh--hhHHHhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K-ETYSAGAVVLAVGI--STLQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~--G-~~~~Ad~VV~A~p~--~~~~~Ll 225 (496)
+.+.|.+.+++.|+++++++.|++++.+++ .|. |+. + | ++++||.||-|... ....+.+
T Consensus 117 l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~--~v~-v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 117 LVAALARAVRGTPVRWLTSTTAHAPAQDAD--GVT-LALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHhCCCEEEcCCeeeeeeecCC--eEE-EEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 667788888888999999999999987763 354 554 2 2 58999999999874 3444544
No 219
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=75.07 E-value=7.8 Score=39.83 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe--CC--eEEecCEEEEcCChhhH
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGISTL 221 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G--~~~~Ad~VV~A~p~~~~ 221 (496)
+.+.|.+.+.+. |++|+++++|++|+.+++ .+. |++ ++ .+++||.||.|...+..
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~--~~~-v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQD--AAT-VTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--eeE-EEEccCCcceEEeeeEEEEeCCCCch
Confidence 566677777664 689999999999987763 343 554 23 36999999999988653
No 220
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=74.84 E-value=5.4 Score=37.06 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=46.3
Q ss_pred EEecCCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 154 ~~~~GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
++|.|=.+.-|.+.+.+..++.|.+|.+. .|.++..+. .-. .|.++.+.+.||+||+|+.+..
T Consensus 62 GFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF-~l~td~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 62 GFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS--KPF-KLWTDARPVTADAVILATGASA 124 (322)
T ss_pred CCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC--CCe-EEEecCCceeeeeEEEecccce
Confidence 45655444447888888888889888765 477887765 333 4677877899999999998854
No 221
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=74.51 E-value=9.1 Score=40.12 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=33.6
Q ss_pred HHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--------------------CCeEEecCEEEEcCCh
Q 010972 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--------------------GKETYSAGAVVLAVGI 218 (496)
Q Consensus 168 L~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--------------------~G~~~~Ad~VV~A~p~ 218 (496)
..+.+++.|++|++++.|.+|..++ +++.+|++ ++.++.+|.||+++..
T Consensus 317 ~~~~~~~~GV~i~~~~~v~~i~~~~--~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 317 EVEHAKEEGVEFEWLAAPVEILGDE--GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred HHHHHHHCCCEEEecCCcEEEEecC--CceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 3456778899999999999998655 33334432 1235778888877654
No 222
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=74.29 E-value=1 Score=46.89 Aligned_cols=56 Identities=29% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC---C-eEEecCEEEEcCChhhHHHhhc
Q 010972 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTLQELIK 226 (496)
Q Consensus 169 ~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~---G-~~~~Ad~VV~A~p~~~~~~Ll~ 226 (496)
.+.+++.|++|++++.|..+..++ +++++|++. | .++.||.||=|+.-..+..+..
T Consensus 97 ~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG 156 (428)
T PF12831_consen 97 DEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAG 156 (428)
T ss_dssp --------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 334466799999999999999987 789888873 3 4789999999998665555543
No 223
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=74.25 E-value=6.8 Score=39.52 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.++++|+++++++.|++|. + +. |++ +|+++.+|.||++++..
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~--~--~~---v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGP--D--GA---LILADGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEc--C--Ce---EEeCCCCEEecCEEEEccCCC
Confidence 55667777889999999999999884 3 32 344 67889999999998854
No 224
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=73.91 E-value=8 Score=39.86 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhH-HHhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~-~~Ll 225 (496)
|.+.|.+.+. +..|+++++|++|+.+++ .+. |+. +|.++.||.||.|...+.. ++.+
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~--~~~-v~~~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQAE--EVQ-VLFTDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecCC--cEE-EEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence 4455554442 457999999999998763 354 554 6778999999999998864 4444
No 225
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=73.86 E-value=9.2 Score=40.28 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC------C---------eEEecCEEEEcCC
Q 010972 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------K---------ETYSAGAVVLAVG 217 (496)
Q Consensus 169 ~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~------G---------~~~~Ad~VV~A~p 217 (496)
.+.+++.|+++++++.+++|..++ |++++|+.. | .++.+|.||+|+.
T Consensus 336 ~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G 397 (471)
T PRK12810 336 VSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG 397 (471)
T ss_pred HHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC
Confidence 345667899999999999997544 677766531 1 3567777777765
No 226
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=73.61 E-value=12 Score=37.60 Aligned_cols=60 Identities=17% Similarity=0.341 Sum_probs=46.3
Q ss_pred CCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-C---C--eEEecCEEEEcCChh
Q 010972 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 158 GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~---G--~~~~Ad~VV~A~p~~ 219 (496)
++|..-+..+..+.|...|.++++++.|+.+..++| |.|. |.+ + | +++++|.+.+++.-.
T Consensus 248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d-g~v~-i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD-GPVE-IEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC-CceE-EEEEecCCCceeEEEeeEEEEEccCc
Confidence 445544778888888889999999999999999887 4554 444 2 3 478999998887653
No 227
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=73.60 E-value=11 Score=38.50 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEe-cCCCCeEEEEEe--CCe--EEecCEEEEcCChhh-HHHhhc
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIY-DEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELIK 226 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~-~~~~g~v~~V~~--~G~--~~~Ad~VV~A~p~~~-~~~Ll~ 226 (496)
+.+.|.+.+.+.|++|+++++|++|+. +++ .+ .|+. +|+ +++||.||-|-..+. +++.++
T Consensus 105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~--~~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~ 170 (392)
T PRK08243 105 VTRDLMAARLAAGGPIRFEASDVALHDFDSD--RP-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIP 170 (392)
T ss_pred HHHHHHHHHHhCCCeEEEeeeEEEEEecCCC--ce-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence 556677766778999999999999986 332 23 2444 564 689999999998875 445543
No 228
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=73.30 E-value=6.2 Score=38.72 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhc------CCEEEcCceeeeEEecCCCCeEEEEEe---CCe--EEecCEEEEcCChhhH
Q 010972 164 IFEPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL 221 (496)
Q Consensus 164 l~~aL~~~l~~~------G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G~--~~~Ad~VV~A~p~~~~ 221 (496)
|..+|..++++. -.+|.+|++|..|..++ |+|.+|+. +|+ .+.+|.||+|+.-...
T Consensus 141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 555666555432 25899999999999766 78999987 354 5789999999987655
No 229
>PRK07846 mycothione reductase; Reviewed
Probab=72.56 E-value=11 Score=39.50 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.+.+. .+.|.+++++++|++|+.++ +.+. |.+ +|+++.+|.||+|++...
T Consensus 209 ~~~~l~~l-~~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 209 ISERFTEL-ASKRWDVRLGRNVVGVSQDG--SGVT-LRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred HHHHHHHH-HhcCeEEEeCCEEEEEEEcC--CEEE-EEECCCcEeecCEEEEEECCcc
Confidence 44444433 35689999999999998665 4443 555 577899999999987643
No 230
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=71.61 E-value=7.9 Score=43.65 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=36.5
Q ss_pred HHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 169 ~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
.+.+++.|.+++++++|++|..++ .. |++ +|+++.+|++|+|+...
T Consensus 61 ~~~~~~~gv~~~~g~~V~~Id~~~--k~---V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 61 KDWYEKHGITLYTGETVIQIDTDQ--KQ---VITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred HHHHHHCCCEEEcCCeEEEEECCC--CE---EEECCCcEeeCCEEEECCCCC
Confidence 345677899999999999998765 33 344 67789999999999874
No 231
>PRK02106 choline dehydrogenase; Validated
Probab=71.45 E-value=6.4 Score=42.47 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=39.0
Q ss_pred hcCCEEEcCceeeeEEecCCCCeEEEEEe--CCe---EEecCEEEEcCChhhHHHhh
Q 010972 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE---TYSAGAVVLAVGISTLQELI 225 (496)
Q Consensus 174 ~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~---~~~Ad~VV~A~p~~~~~~Ll 225 (496)
+.+.+|++++.|++|..++ +++++|++ .++ .+.++.||+|...-...+||
T Consensus 213 ~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LL 267 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLL 267 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHH
Confidence 3468999999999999975 68889887 222 45799999999876665554
No 232
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=71.42 E-value=7.4 Score=38.36 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC-C--eEEecCEEEEcCChhhHHHhh
Q 010972 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGISTLQELI 225 (496)
Q Consensus 163 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~-G--~~~~Ad~VV~A~p~~~~~~Ll 225 (496)
++-++|.+.+++.||.+..+-+|.+....+ |+|+.|-+. + ..++||.+|+|+..-.-+.|.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGLv 322 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLV 322 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccch
Confidence 578899999999999999999999999988 788887773 3 357899999998775544443
No 233
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=71.13 E-value=14 Score=34.37 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC-------C-----eEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~-------G-----~~~~Ad~VV~A~p~~~ 220 (496)
++..|+.+.-+.|.+|..++.|+.|...++ .+|.||.++ + -+++|+.||.||....
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda 178 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA 178 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence 455666666678999999999999999884 278888763 2 2578888888887754
No 234
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=70.97 E-value=9.6 Score=39.73 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.+.+.+++.|.+++++++|++|+ + .. |++ +|+++.+|.||++++...
T Consensus 191 ~~~~l~~~l~~~gI~i~~~~~v~~i~--~--~~---v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 191 MNQPILDELDKREIPYRLNEEIDAIN--G--NE---VTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHHHHHhcCCEEEECCeEEEEe--C--CE---EEECCCCEEEeCEEEECcCCCc
Confidence 56677788889999999999999995 2 22 333 577899999999988643
No 235
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=70.97 E-value=13 Score=38.58 Aligned_cols=61 Identities=8% Similarity=0.135 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhcC---CEEEcCceeeeEEec-----CCCCeEEEEEe-CCeEEecCEEEEcCChhhH-HHhh
Q 010972 164 IFEPWMDSMRTRG---CEFLDGRRVTDFIYD-----EERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G---~~I~l~~~V~~I~~~-----~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~-~~Ll 225 (496)
+.+.|.+.+++.+ ++|+++++|++|+.+ +++..+. |++ +|++++||.||-|-..+.. ++.+
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~-v~~~~g~~i~a~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH-ITLSDGQVLYTKLLIGADGSNSNVRKAA 189 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE-EEEcCCCEEEeeEEEEecCCCChhHHHc
Confidence 5566777777665 799999999999853 1112343 555 6789999999999988764 4444
No 236
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=70.80 E-value=9.1 Score=39.23 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=34.8
Q ss_pred HHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 172 l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.++++++.|+.|..++ .. |.+ +|+++.+|++|+|+....
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~--~~---v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDT--RE---LVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCC--CE---EEECCCCEEEcCEEEEccCCCC
Confidence 456799999999999998765 33 334 677899999999998753
No 237
>PRK12831 putative oxidoreductase; Provisional
Probab=70.50 E-value=12 Score=39.26 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=32.6
Q ss_pred HHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-------------------CCe--EEecCEEEEcCCh
Q 010972 171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------GKE--TYSAGAVVLAVGI 218 (496)
Q Consensus 171 ~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-------------------~G~--~~~Ad~VV~A~p~ 218 (496)
.+++.|++|++++.+.+|..+++ |++.+|.+ +|+ ++.+|.||+|+..
T Consensus 327 ~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~ 394 (464)
T PRK12831 327 HAKEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394 (464)
T ss_pred HHHHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCC
Confidence 35667999999999999986543 66766543 111 4677777777654
No 238
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=70.18 E-value=15 Score=38.63 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=23.6
Q ss_pred HHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe
Q 010972 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 202 (496)
Q Consensus 170 ~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~ 202 (496)
+.+++.|+++++++.+++|..+++ |++.+|++
T Consensus 328 ~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~ 359 (467)
T TIGR01318 328 ANAREEGVEFLFNVQPVYIECDED-GRVTGVGL 359 (467)
T ss_pred HHHHhcCCEEEecCCcEEEEECCC-CeEEEEEE
Confidence 445678999999999999976543 56765543
No 239
>PRK07236 hypothetical protein; Provisional
Probab=70.04 E-value=13 Score=37.81 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=34.1
Q ss_pred CCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 176 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 176 G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+|++++.|++|+.++ +.|. |+. +|+++.||.||.|-..+.
T Consensus 112 ~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 112 AERYHLGETLVGFEQDG--DRVT-ARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred CcEEEcCCEEEEEEecC--CeEE-EEECCCCEEEeCEEEECCCCCc
Confidence 46899999999999876 4464 555 678899999999988765
No 240
>PRK06126 hypothetical protein; Provisional
Probab=69.86 E-value=16 Score=39.29 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+-+.|.+.+++. |++|++++.|++|+.++ +.|+ +++ +|+ ++.||.||.|...+. +++.+
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~l 194 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSL 194 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhc
Confidence 444566666554 78999999999999876 3454 332 253 689999999999876 34444
No 241
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=69.27 E-value=12 Score=38.00 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEE---EEeCCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD---VVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~---V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.+.+.+++.|.++++++.|.+|+..+ +.+.. +..++..+.+|.++++++..-
T Consensus 180 ~~~~~~~~l~~~gi~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 180 VAEELAELLEKYGVELLLGTKVVGVEGKG--NTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHHHHHCCcEEEeCCceEEEEccc--CcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 77788888999999999999999999876 33332 334678899999999886643
No 242
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=68.48 E-value=15 Score=40.49 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=25.5
Q ss_pred HHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe
Q 010972 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 202 (496)
Q Consensus 168 L~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~ 202 (496)
..+.+++.|+++++++.+++|..+++ |++.+|++
T Consensus 512 e~~~~~~~Gv~~~~~~~~~~i~~~~~-g~v~~v~~ 545 (654)
T PRK12769 512 EVKNAREEGANFEFNVQPVALELNEQ-GHVCGIRF 545 (654)
T ss_pred HHHHHHHcCCeEEeccCcEEEEECCC-CeEEEEEE
Confidence 34557778999999999999976544 66766654
No 243
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=68.42 E-value=17 Score=38.11 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+ +.+.|.++++++.|++|+.++ +.+. |.+ +|+++++|.||++++..
T Consensus 212 ~~~~l~~-~~~~gI~i~~~~~V~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 212 ISDRFTE-IAKKKWDIRLGRNVTAVEQDG--DGVT-LTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred HHHHHHH-HHhcCCEEEeCCEEEEEEEcC--CeEE-EEEcCCCEEEcCEEEEeeccC
Confidence 4444444 334689999999999998765 3453 555 57789999999998754
No 244
>PLN02985 squalene monooxygenase
Probab=68.23 E-value=1.7e+02 Score=31.20 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe---CCe--EEecCEEEEcCChhh-HHHhhc
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST-LQELIK 226 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G~--~~~Ad~VV~A~p~~~-~~~Ll~ 226 (496)
+.+.|.+.+++. +++++.+ .|+++..++ +.+.+|++ +|+ ++.||.||.|..... +++.+.
T Consensus 149 l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~ 215 (514)
T PLN02985 149 FVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLN 215 (514)
T ss_pred HHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhc
Confidence 566777777665 5788765 576776555 55666765 454 467999999998875 444443
No 245
>PRK05868 hypothetical protein; Validated
Probab=67.75 E-value=16 Score=37.17 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=38.7
Q ss_pred hcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhhc
Q 010972 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (496)
Q Consensus 174 ~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll~ 226 (496)
..|.+|+++++|++|+.++ +.|. |+. +|++++||.||-|-..+. +++.+.
T Consensus 116 ~~~v~i~~~~~v~~i~~~~--~~v~-v~~~dg~~~~adlvIgADG~~S~vR~~~~ 167 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDG--DSVR-VTFERAAAREFDLVIGADGLHSNVRRLVF 167 (372)
T ss_pred cCCcEEEeCCEEEEEEecC--CeEE-EEECCCCeEEeCEEEECCCCCchHHHHhc
Confidence 3578999999999998765 4464 555 678899999999999875 455553
No 246
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=67.59 E-value=5.6 Score=43.31 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 167 aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
.|.+.+++.|.++++++.+++|..+ +++.+|+. +|..+.||-||.|+...
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g~---~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVGE---DKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhcC---cceeeEeecCCCcccceeEEEecccc
Confidence 3666678899999999999999873 45778887 68899999999998763
No 247
>PRK06475 salicylate hydroxylase; Provisional
Probab=67.20 E-value=19 Score=36.82 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=43.0
Q ss_pred hHHHHHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEEe---C-CeEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~-G~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
|.+.|.+.+.+ .|++|+++++|++++.++ +.+. |+. + ++++.||.||-|-..+. +++.+
T Consensus 109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~ 173 (400)
T PRK06475 109 LQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKA 173 (400)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhc
Confidence 55667776655 378999999999998766 3453 333 3 35789999999999876 45554
No 248
>PRK06753 hypothetical protein; Provisional
Probab=67.18 E-value=14 Score=37.27 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+.+.|.+.+. +.+|+++++|++|+.++ +++. |++ +|+++.+|.||-|...+. +++.+
T Consensus 100 l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~~~vigadG~~S~vR~~~ 158 (373)
T PRK06753 100 LIDIIKSYVK--EDAIFTGKEVTKIENET--DKVT-IHFADGESEAFDLCIGADGIHSKVRQSV 158 (373)
T ss_pred HHHHHHHhCC--CceEEECCEEEEEEecC--CcEE-EEECCCCEEecCEEEECCCcchHHHHHh
Confidence 3344444432 46899999999998766 4464 555 677899999999999875 44544
No 249
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=66.65 E-value=16 Score=39.02 Aligned_cols=50 Identities=12% Similarity=0.294 Sum_probs=37.0
Q ss_pred HHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEEe-C---C--eEEecCEEEEcCChh
Q 010972 168 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 168 L~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~---G--~~~~Ad~VV~A~p~~ 219 (496)
+.+.+++ .|++|++++.|++|..++ +++.+|++ + | +++.+|.||+++...
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 449 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence 4555665 599999999999998654 55666654 2 2 468999999988754
No 250
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=66.50 E-value=24 Score=32.88 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC-------C-----eEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~-------G-----~~~~Ad~VV~A~p~~~ 220 (496)
++..|....-+.|++|...+.|+.+...++ +||.||+++ | -+++|+.||-||..+.
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 455566666568999999999999998875 689999873 2 2789999999996653
No 251
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=66.09 E-value=64 Score=34.28 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=46.3
Q ss_pred ceEEecCCchh-hhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 152 DLVWCRGTLRE-KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 152 ~~~~~~GG~~~-~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
.+.|..|.... ++.-.++--+.++|..+.-..+|.++..+++ |++.|+.+ .|+ ++.|+.||-|+.|-.
T Consensus 213 a~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs 287 (680)
T KOG0042|consen 213 AMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAKVVVNATGPFS 287 (680)
T ss_pred EEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEEEEEeCCCCcc
Confidence 34566665443 3433344334567999988889999999887 57777766 255 568889999998753
No 252
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=65.71 E-value=21 Score=38.35 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe---CCe-EEecCEEEEcCChhh-HHHhhc
Q 010972 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TYSAGAVVLAVGIST-LQELIK 226 (496)
Q Consensus 164 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~---~G~-~~~Ad~VV~A~p~~~-~~~Ll~ 226 (496)
+-+.|.+.+++. |++|+++++|++++.+++ .+. ++. +|+ ++.||.||.|...+. +.+.+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~v~-v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDD--GVT-LTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC--EEE-EEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 444566666665 689999999999998763 343 333 343 689999999998875 455553
No 253
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=65.43 E-value=16 Score=37.91 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=35.8
Q ss_pred HHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe--CCeEEe--cCEEEEcCChh
Q 010972 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYS--AGAVVLAVGIS 219 (496)
Q Consensus 169 ~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~~~~--Ad~VV~A~p~~ 219 (496)
.+.+++.|.++++++.|++|..++ ..+. +.. +|+++. +|++|+|+...
T Consensus 63 ~~~~~~~gv~~~~~~~V~~id~~~--~~v~-~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 63 PEEFIKSGIDVKTEHEVVKVDAKN--KTIT-VKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HHHHHHCCCeEEecCEEEEEECCC--CEEE-EEECCCCCEEEecCCEEEECCCCC
Confidence 344667799999999999998766 4443 443 255666 99999999874
No 254
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=63.73 E-value=21 Score=35.17 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=41.7
Q ss_pred CchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 159 G~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
-.+..|.+.+.+..+..|.++.. ..|.+++..+ . ...|.++.++++|++||+|+....
T Consensus 58 ~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~-~F~v~t~~~~~~ak~vIiAtG~~~ 115 (305)
T COG0492 58 ILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG--G-PFKVKTDKGTYEAKAVIIATGAGA 115 (305)
T ss_pred CchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC--c-eEEEEECCCeEEEeEEEECcCCcc
Confidence 34444777777777777888877 7787777654 2 334777644599999999998854
No 255
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=62.68 E-value=12 Score=33.75 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=35.2
Q ss_pred HHHHHHhcCCEEEcCceeeeEEecCCCCeE----EEE---Ee-CCeEEecCEEEEcCCh
Q 010972 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCI----SDV---VC-GKETYSAGAVVLAVGI 218 (496)
Q Consensus 168 L~~~l~~~G~~I~l~~~V~~I~~~~~~g~v----~~V---~~-~G~~~~Ad~VV~A~p~ 218 (496)
+.+.+...+.++++++.|.+|.... +.+ ..+ .. ++.++.+|+||+|+..
T Consensus 64 ~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 64 LVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp HHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred cccccccceEEEeeccccccccccc--cccccCcccceeeccCCceEecCCeeeecCcc
Confidence 4444556789999999999998876 432 112 12 3568999999999985
No 256
>PRK11445 putative oxidoreductase; Provisional
Probab=62.43 E-value=28 Score=34.97 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=36.4
Q ss_pred hcCCEEEcCceeeeEEecCCCCeEEEEEe--CCe--EEecCEEEEcCChhh-HHHhh
Q 010972 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 174 ~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~G~--~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+.|+++++++.|++|+.+++ .+. |+. +|+ +++||.||.|..... +++.+
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~--~~~-v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l 163 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDD--GYH-VIFRADGWEQHITARYLVGADGANSMVRRHL 163 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCC--EEE-EEEecCCcEEEEEeCEEEECCCCCcHHhHHh
Confidence 46899999999999988763 343 543 453 689999999999875 34443
No 257
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=62.13 E-value=19 Score=37.28 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=34.1
Q ss_pred HHhcCCEEEcCceeeeEEecCCCCeEEEEEeC--CeEEe--cCEEEEcCChh
Q 010972 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYS--AGAVVLAVGIS 219 (496)
Q Consensus 172 l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~--G~~~~--Ad~VV~A~p~~ 219 (496)
+.+.|.++++++.|++|..++ +.+. +..+ ++++. +|+||+|+...
T Consensus 54 ~~~~gv~~~~~~~V~~id~~~--~~v~-~~~~~~~~~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDER--QTVV-VRNNKTNETYEESYDYLILSPGAS 102 (427)
T ss_pred HHhcCCeEEecCEEEEEECCC--CEEE-EEECCCCCEEecCCCEEEECCCCC
Confidence 367799999999999998765 4453 4433 45677 99999999873
No 258
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=62.02 E-value=15 Score=37.00 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=27.4
Q ss_pred CEEEcCceeeeEEecCCCCeEEEEEe-C---C--eEEecCEEEEcCCh
Q 010972 177 CEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGI 218 (496)
Q Consensus 177 ~~I~l~~~V~~I~~~~~~g~v~~V~~-~---G--~~~~Ad~VV~A~p~ 218 (496)
.+|+.++.|++++..++ |++. +++ + | .++.+|.||+||.-
T Consensus 294 ~~l~~~~~v~~~~~~~~-~~~~-l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGD-GGVR-LTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SEEETTEEEEEEEEES--SSEE-EEEEETTT--EEEEEESEEEE---E
T ss_pred eEEeCCCEEEEEEECCC-CEEE-EEEEECCCCCeEEEecCEEEEcCCc
Confidence 68999999999999875 3454 554 1 2 47899999999863
No 259
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=61.41 E-value=12 Score=37.80 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 167 aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
.+.+.+++.|++++.+ .|++|..++ .. |.+ +|+++.+|++|+|+....
T Consensus 59 ~~~~~~~~~gv~~~~~-~v~~id~~~--~~---V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 59 DLRRLARQAGARFVIA-EATGIDPDR--RK---VLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred cHHHHHHhcCCEEEEE-EEEEEeccc--CE---EEECCCCcccccEEEEccCCCC
Confidence 3445566679998875 799998765 33 445 577899999999998654
No 260
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=61.24 E-value=26 Score=36.63 Aligned_cols=55 Identities=25% Similarity=0.164 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCC--EEEcCceeeeEEecCCCCeEEEEEeC-CeE--EecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KET--YSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~--~I~l~~~V~~I~~~~~~g~v~~V~~~-G~~--~~Ad~VV~A~p~~ 219 (496)
+.+-+.+.+++.+. +|+.+++|+.+..+++ +..+.|+++ |.+ +.||.||+|+...
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~w~V~~~~~~~~~~~a~~vV~ATG~~ 143 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKRWTVTTSDGGTGELTADFVVVATGHL 143 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCeEEEEEcCCCeeeEecCEEEEeecCC
Confidence 44556677776664 7999999999888776 335557774 433 5699999999883
No 261
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=60.53 E-value=26 Score=33.79 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=37.6
Q ss_pred HHHHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEcCChh
Q 010972 165 FEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 165 ~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G--~~~~Ad~VV~A~p~~ 219 (496)
...+.+.+++. |.++++++.|++|..++ ++..++. +| .++.+|.||++++..
T Consensus 179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 179 EKILLDRLRKNPNIEFLWNSTVKEIVGDN---KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred CHHHHHHHHhCCCeEEEeccEEEEEEccC---cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 34456677777 99999999999998543 3444443 13 578999999998854
No 262
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=59.52 E-value=15 Score=36.80 Aligned_cols=43 Identities=33% Similarity=0.295 Sum_probs=28.9
Q ss_pred CCEEEcCceeeeEEecCCCC-eEEEEEe-----CCeEEecCEEEEcCCh
Q 010972 176 GCEFLDGRRVTDFIYDEERC-CISDVVC-----GKETYSAGAVVLAVGI 218 (496)
Q Consensus 176 G~~I~l~~~V~~I~~~~~~g-~v~~V~~-----~G~~~~Ad~VV~A~p~ 218 (496)
+..++++++|++|...++++ ..+.|.+ +++++.|++||+++..
T Consensus 109 ~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 109 DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 44599999999999876421 2445776 2468999999999874
No 263
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=58.35 E-value=32 Score=36.86 Aligned_cols=42 Identities=21% Similarity=0.098 Sum_probs=30.0
Q ss_pred EEEcCceeeeEEecCCC---CeEEEEEe--CCe--EEecCEEEEcCChhh
Q 010972 178 EFLDGRRVTDFIYDEER---CCISDVVC--GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 178 ~I~l~~~V~~I~~~~~~---g~v~~V~~--~G~--~~~Ad~VV~A~p~~~ 220 (496)
.|++||.|++|+..+|. |++ .|++ +|+ +..+|+||+|+....
T Consensus 102 ~I~fnt~V~~v~~~~d~~~~~~W-~V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 102 HIRFNTEVVSVERDPDFSATGKW-EVTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp GEETSEEEEEEEEETTTT-ETEE-EEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred eEEEccEEeEeeeccccCCCceE-EEEeecCCeEEEEEeCeEEEcCCCcC
Confidence 69999999999986531 344 4766 343 457899999998754
No 264
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=58.25 E-value=18 Score=35.60 Aligned_cols=112 Identities=9% Similarity=-0.011 Sum_probs=69.9
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHhccCC--cceEEecCCchhhhHHHHHHHH
Q 010972 95 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKN--FDLVWCRGTLREKIFEPWMDSM 172 (496)
Q Consensus 95 ~~Sv~~~l~~~~~~~~~~~~l~~pl~~~~~~~~p~~~Sa~~~~~~l~~~~~~~~~~--~~~~~~~GG~~~~l~~aL~~~l 172 (496)
-.++++-.-+. .++.+++.|+.+.....|+.+|+++++.....+=-++...+..- .--+.|++|.-. +.+.| +
T Consensus 131 ~q~~ee~ais~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~-~~~kM---l 205 (374)
T COG0562 131 PQNLEEQAISL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTA-MFEKM---L 205 (374)
T ss_pred hhhhhhHHHHH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHHH-HHHHH---h
Confidence 34555555553 67889999999999999999999999876543221110000000 012568888654 43333 3
Q ss_pred HhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhHHH
Q 010972 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (496)
Q Consensus 173 ~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~~~ 223 (496)
.....+|++||.-..|....+ + +.+..||-+-|....-.
T Consensus 206 ~hp~I~V~Lntd~~~~~~~~~----------~--~~~~~VvytG~iD~~Fd 244 (374)
T COG0562 206 DHPNIDVRLNTDFFDVKDQLR----------A--IPFAPVVYTGPIDAYFD 244 (374)
T ss_pred cCCCceEEecCcHHHHhhhhc----------c--cCCCceEEecchHhhhc
Confidence 445679999998877654331 1 34558888888766543
No 265
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=57.71 E-value=21 Score=40.67 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=35.2
Q ss_pred HHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 170 ~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
+.+++.|.+++++++|++|..+. . + |.+ +|+++.+|++|+|+...
T Consensus 67 ~~~~~~gI~~~~g~~V~~Id~~~--~-~--V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 67 GFYEKHGIKVLVGERAITINRQE--K-V--IHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred HHHHhCCCEEEcCCEEEEEeCCC--c-E--EEECCCcEEECCEEEECCCCC
Confidence 34566799999999999998754 2 2 344 57789999999999864
No 266
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=57.30 E-value=6.4 Score=42.34 Aligned_cols=46 Identities=22% Similarity=0.157 Sum_probs=32.6
Q ss_pred CCCCCCCEEEcCCCccCCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 360 GFTSFPNLFMAGDWITTRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
.+++|||||-||+-+...||+ ..+-.++-.|+.+|+ .|++.+.+..
T Consensus 357 ~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr---~Ag~~aa~~~ 403 (543)
T PRK06263 357 CETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGA---IAGKSAAKNA 403 (543)
T ss_pred CcccCCCeEeccccccCCCCCCccchhhhhhhHHHHH---HHHHHHHHHh
Confidence 348899999999976555665 222223556788888 9999887654
No 267
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=57.26 E-value=28 Score=38.28 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=22.3
Q ss_pred HHhcCCEEEcCceeeeEEecCCCCeEEEEE
Q 010972 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVV 201 (496)
Q Consensus 172 l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~ 201 (496)
+++.|+++++++.+++|..+++ |++.+|.
T Consensus 499 a~~eGv~~~~~~~~~~i~~~~~-g~v~~v~ 527 (639)
T PRK12809 499 AREEGVEFQFNVQPQYIACDED-GRLTAVG 527 (639)
T ss_pred HHHcCCeEEeccCCEEEEECCC-CeEEEEE
Confidence 4567999999999999986544 6676654
No 268
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=56.74 E-value=37 Score=35.78 Aligned_cols=52 Identities=25% Similarity=0.282 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-C--C--eEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~--G--~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++. .+|++++.|++|+.++ +.+. +++ + | +++++|.||+++...
T Consensus 217 ~~~~~~~~l~~~-v~i~~~~~v~~i~~~~--~~~~-v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 217 IVKVFTKRIKKQ-FNIMLETKVTAVEAKE--DGIY-VTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred HHHHHHHHHhhc-eEEEcCCEEEEEEEcC--CEEE-EEEEeCCCcceEEEeCEEEEeeccc
Confidence 566677778777 9999999999998765 3343 443 2 2 369999999998764
No 269
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=56.66 E-value=14 Score=39.10 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=37.4
Q ss_pred HHHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhhHHHh
Q 010972 167 PWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL 224 (496)
Q Consensus 167 aL~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~L 224 (496)
.+.+.++.. +..|+ ...|+.|..+++ .+|++|++ +|..+.|++||+|+....-..+
T Consensus 105 ~mk~~le~~~NL~l~-q~~v~dli~e~~-~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 105 AMKNELENQPNLHLL-QGEVEDLIVEEG-QRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred HHHHHHhcCCCceeh-HhhhHHHhhcCC-CeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 344444433 34443 445677777662 36889988 5889999999999988665444
No 270
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=56.66 E-value=38 Score=38.96 Aligned_cols=55 Identities=18% Similarity=0.145 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhc----CCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~----G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+.+.|.+.+.+. +.++..++.+.++..++ |++.||.. +|+ .+.|+.||+||....
T Consensus 141 i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 141 VKKALYRVLRQRSMRERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGAKAVILATGPCG 205 (897)
T ss_pred HHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence 666777776654 45666666666877665 78888875 354 579999999998753
No 271
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.38 E-value=29 Score=34.65 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=45.6
Q ss_pred CCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 158 GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
-|..+.+.+-+.+.++..|.++|.++.|+++...++ |....++..|....+|.++.|+.-.
T Consensus 226 R~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~-g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 226 RGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD-GLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred cchhHHHHHHHHHHhhhcceeecccccceeeeecCC-CceEEEEeccccccccEEEEEecCC
Confidence 455555677777888888999999999999999876 3333244456656699999998653
No 272
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=56.37 E-value=31 Score=35.15 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-C------C--eEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G------K--ETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~------G--~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+-+.|.+.+.+.|++|+.+ .|++|..++ +.+. |++ + | .+++||.||.|...+. +.+.+
T Consensus 94 fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~~-v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~l 161 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHG-LFLKLERDR--DGVT-LTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKEL 161 (388)
T ss_pred HHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeEE-EEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHc
Confidence 5556777777789999765 699998766 4443 443 1 2 3789999999999764 34433
No 273
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=56.22 E-value=8.5 Score=35.82 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=29.3
Q ss_pred CCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 363 SFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 363 ~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
-.||||.||-.+...+|.-.+-=.+-|=++||. .||+.|+++|.
T Consensus 217 V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGk---kaAe~i~e~L~ 260 (262)
T COG1635 217 VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGK---KAAEEILEKLK 260 (262)
T ss_pred ccCCeEeehhhHHhhcCCcccCchhhhhhhchH---HHHHHHHHHhh
Confidence 469999999877644444111111223368999 99999999874
No 274
>PRK07538 hypothetical protein; Provisional
Probab=55.93 E-value=38 Score=34.83 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=40.5
Q ss_pred hHHHHHHHHHh-cCC-EEEcCceeeeEEecCCCCeEEEEEe--CC--eEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRT-RGC-EFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~-~G~-~I~l~~~V~~I~~~~~~g~v~~V~~--~G--~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
|.+.|.+.+.+ .|. +|+++++|++++.+++ +.+..+.. +| +++.||.||-|-..+. +++.+
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD-VTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 44556666544 464 6999999999987764 32322222 12 4789999999999876 34444
No 275
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=55.84 E-value=22 Score=36.74 Aligned_cols=40 Identities=23% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 360 GFTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
..+.++|||.+||...- .|. +-+|..+|. .+|+.|+.+++
T Consensus 445 ~~t~i~gLy~aGdGAG~-arg------I~~Aaa~Gi---~~A~~i~~k~~ 484 (486)
T COG2509 445 LSTSIKGLYPAGDGAGL-ARG------IVSAAADGI---KAAEGIARKYG 484 (486)
T ss_pred ceeeecceEEccccccc-cch------hHHHhhhhH---HHHHHHHHHhc
Confidence 45779999999996542 222 577888999 99999998765
No 276
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=55.02 E-value=32 Score=38.66 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=23.9
Q ss_pred HHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe
Q 010972 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 202 (496)
Q Consensus 170 ~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~ 202 (496)
+.+++.|.+|++++.+.+|..+++ |++++|++
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~-g~v~~v~~ 647 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEK-GWVKQVVL 647 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCC-CEEEEEEE
Confidence 346778999999999999976543 66766654
No 277
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.45 E-value=6.1 Score=42.95 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=33.0
Q ss_pred CCCCCCCEEEcCCCccCCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 360 GFTSFPNLFMAGDWITTRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
..+++||||-||+-+.+.||+ ..+-.++-.|++.|+ .|++.+.+.
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr---~Ag~~aa~~ 409 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGM---VAGPNAVEY 409 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHH---HHHHHHHHH
Confidence 457899999999976567777 233344667788888 888887654
No 278
>PRK10262 thioredoxin reductase; Provisional
Probab=54.41 E-value=43 Score=32.99 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.+.+.+...+.+++.+ .|+.|...+ +.+. +..+.+++.+|+||+|+....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~-v~~~~~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 65 LMERMHEHATKFETEIIFD-HINKVDLQN--RPFR-LTGDSGEYTCDALIIATGASA 117 (321)
T ss_pred HHHHHHHHHHHCCCEEEee-EEEEEEecC--CeEE-EEecCCEEEECEEEECCCCCC
Confidence 4555566666677788776 577887765 4443 554445789999999998753
No 279
>PRK13984 putative oxidoreductase; Provisional
Probab=53.37 E-value=32 Score=37.51 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=20.8
Q ss_pred HhcCCEEEcCceeeeEEecCCCCeEEEEEe
Q 010972 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC 202 (496)
Q Consensus 173 ~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~ 202 (496)
.+.|++|++++.+.+|..++ |++.+|++
T Consensus 473 ~~~GV~i~~~~~~~~i~~~~--g~v~~v~~ 500 (604)
T PRK13984 473 LEEGVVIYPGWGPMEVVIEN--DKVKGVKF 500 (604)
T ss_pred HHcCCEEEeCCCCEEEEccC--CEEEEEEE
Confidence 35799999999998887654 56766643
No 280
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=52.96 E-value=36 Score=35.56 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-C--CeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--KETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~--G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++. .+|+++++|++|+.+++ .++. ++. + ++++.+|.||+++...
T Consensus 212 ~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~-~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 212 VSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKVE-ELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred HHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceEE-EEEcCCceEEEEeCEEEEccCCc
Confidence 556667778888 99999999999986542 2343 322 3 3579999999997653
No 281
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=52.94 E-value=8.4 Score=40.79 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=32.7
Q ss_pred CCCCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 360 GFTSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.++++||||-||+.+. ..||+ ..+-.++-.|+++|+ +|++.+.+.
T Consensus 342 ~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~---~Ag~~aa~~ 388 (488)
T TIGR00551 342 GRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGW---SAAEDISRR 388 (488)
T ss_pred CcccCCCEEECccccccccCcccccchhHHHHHHHHHH---HHHHHHHhh
Confidence 4578999999999764 46766 222334667788888 999988764
No 282
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=52.59 E-value=41 Score=36.31 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+++.|.+++ ++.|++|..++ . ...|.++++.+.+|+||+|+...
T Consensus 62 l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~-~~~V~~~~g~~~a~~lVlATGa~ 113 (555)
T TIGR03143 62 LMQEMRQQAQDFGVKFL-QAEVLDVDFDG--D-IKTIKTARGDYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHcCCEEe-ccEEEEEEecC--C-EEEEEecCCEEEEeEEEECCCCc
Confidence 56667777777899985 78899998754 2 33466655568999999999874
No 283
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=52.27 E-value=47 Score=33.90 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEe-cCCCCeEEEEEe--CCe--EEecCEEEEcCChhh-HHHhhc
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIY-DEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELIK 226 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~-~~~~g~v~~V~~--~G~--~~~Ad~VV~A~p~~~-~~~Ll~ 226 (496)
+.+.|.+.+.+.|+++++++.+.++.. +++ .+ .|+. +|+ +++||.||-|-..+. +++.++
T Consensus 105 l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~--~~-~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~ 170 (390)
T TIGR02360 105 VTRDLMEAREAAGLTTVYDADDVRLHDLAGD--RP-YVTFERDGERHRLDCDFIAGCDGFHGVSRASIP 170 (390)
T ss_pred HHHHHHHHHHhcCCeEEEeeeeEEEEecCCC--cc-EEEEEECCeEEEEEeCEEEECCCCchhhHHhcC
Confidence 556677777777999999999888865 332 22 2433 564 689999999998875 455543
No 284
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=51.89 E-value=36 Score=35.40 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=33.2
Q ss_pred HhcCCEEEcCceeeeEEecCCCCeEEEEEeC--Ce--EEecCEEEEcCChhh
Q 010972 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 173 ~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~--G~--~~~Ad~VV~A~p~~~ 220 (496)
+..|.+++++++|++|..++ ..|. +..+ ++ ++.+|++|+|+....
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~--~~v~-~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDER--QTVT-VLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECCC--CEEE-EEECCCCcEEeeecCEEEECCCCCC
Confidence 45689999999999998776 4443 4432 22 468999999998753
No 285
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=51.43 E-value=15 Score=37.49 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHhHhcCCCCCCeeEeEEE-EeeCCCceeeCCCCcCCCCCCCC-CCCCEEEcCCCccCCCCCCCCCCCCccccccCcCh
Q 010972 320 SYLSKCIKDFSTATVMDHKI-RRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWST 397 (496)
Q Consensus 320 ~~L~~~~P~~~~~~v~~~~v-~~~~~a~~~~~pG~~~~rp~~~t-~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~ 397 (496)
.++-+..|++..++++..-+ ++.. +...|.. .+..++ .++|||+||+-+.+ .|+ +-|+.+|.
T Consensus 315 ~~~~r~IpGLe~a~~~r~Gy~~ey~---~v~~~~l---~~~l~~k~~~~lf~AGqi~G~-~Gy-------~eaaa~G~-- 378 (392)
T PF01134_consen 315 KRIFRSIPGLENAEILRPGYAHEYD---FVDPPQL---LNTLETKKIPGLFFAGQINGT-EGY-------EEAAAQGL-- 378 (392)
T ss_dssp HHHHTTSTTTTT--EEE--EEEEEE---EE-GGGB---BTTSBBSSSBTEEE-GGGGTB--SH-------HHHHHHHH--
T ss_pred HHHhhcCCChhcChhhheEEeeeee---EEehhhc---ccceEECCCCCceECCCCcch-hHH-------HHHHHHHH--
Confidence 34556689998655443211 1111 1111111 123344 48999999997765 566 55556787
Q ss_pred HHHHHHHHHHc
Q 010972 398 ILEMEAFLKLF 408 (496)
Q Consensus 398 ~~AA~~il~~l 408 (496)
.|+.-+...+
T Consensus 379 -~ag~na~~~~ 388 (392)
T PF01134_consen 379 -IAGINAARRL 388 (392)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 7776665543
No 286
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=50.48 E-value=9.5 Score=41.40 Aligned_cols=46 Identities=22% Similarity=0.146 Sum_probs=32.9
Q ss_pred CCCCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 360 GFTSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
.++++||||-||+-+. +.||+ ..+-.++-.|+++|+ +|++.+.+..
T Consensus 367 ~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr---~Ag~~aa~~~ 414 (582)
T PRK09231 367 CETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGR---VAGEQAAERA 414 (582)
T ss_pred CccccCCEEecccccccccCCCCCcchhHHHHHHHHHH---HHHHHHHHhh
Confidence 3488999999999654 46676 222334667888888 8888887653
No 287
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=49.86 E-value=51 Score=38.34 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-----CCeEEecCEEEEcCChhhHHHh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----GKETYSAGAVVLAVGISTLQEL 224 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-----~G~~~~Ad~VV~A~p~~~~~~L 224 (496)
+...+.+.+++.|++|++++.|++|.-++ ++.+|+. +++++.+|.|+++....--..|
T Consensus 353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g~~---~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L 415 (985)
T TIGR01372 353 VSPEARAEARELGIEVLTGHVVAATEGGK---RVSGVAVARNGGAGQRLEADALAVSGGWTPVVHL 415 (985)
T ss_pred hhHHHHHHHHHcCCEEEcCCeEEEEecCC---cEEEEEEEecCCceEEEECCEEEEcCCcCchhHH
Confidence 34456677888999999999999997533 3444543 2457999999998876443333
No 288
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=49.79 E-value=38 Score=36.15 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=37.0
Q ss_pred HHHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEcCChh
Q 010972 167 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 167 aL~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G--~~~~Ad~VV~A~p~~ 219 (496)
.+.+.+.+ .|.+|++++.|++|..++ +++.+|.+ +| +++.+|.|++++...
T Consensus 391 ~l~~~l~~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 391 VLQDKLRSLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred HHHHHHhcCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 34455654 589999999999998664 56666654 23 358999999987664
No 289
>PRK06175 L-aspartate oxidase; Provisional
Probab=49.71 E-value=12 Score=39.00 Aligned_cols=45 Identities=22% Similarity=0.053 Sum_probs=31.8
Q ss_pred CCCCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 360 GFTSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.++++||||-||.-+. ..||. ..+-.++-.+++.|+ +|++.+...
T Consensus 340 ~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr---~Ag~~a~~~ 386 (433)
T PRK06175 340 SKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSK---RGAEKINSE 386 (433)
T ss_pred ccccCCCeEecccccccCCCccccchhHHHHHHHHHHH---HHHHHHHHh
Confidence 3478999999999764 46665 222234666778888 999887653
No 290
>PLN02661 Putative thiazole synthesis
Probab=49.27 E-value=13 Score=37.51 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=31.4
Q ss_pred CCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcCCCC
Q 010972 363 SFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQWRK 412 (496)
Q Consensus 363 ~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg~~~ 412 (496)
-+||||.||-.+...+|.-.+--.+-|=++||. .||+.|++.|+.+.
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~---k~a~~~~~~l~~~~ 331 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQ---KAAHLALKALGLPN 331 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhH---HHHHHHHHHHccch
Confidence 379999999877644443111111222368999 99999999998544
No 291
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=48.72 E-value=49 Score=33.19 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-------------------C--CeEEecCEEEEcCCh
Q 010972 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------G--KETYSAGAVVLAVGI 218 (496)
Q Consensus 167 aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-------------------~--G~~~~Ad~VV~A~p~ 218 (496)
.+.+.++++|.+|++++.|.+|+.++ ++..|.. + +.++.+|.||+++..
T Consensus 215 ~~~~~l~~~gi~i~~~~~v~~i~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 215 YEIERLIARGVEFLELVTPVRIIGEG---RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred HHHHHHHHcCCEEeeccCceeeecCC---cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 44566888999999999999987443 2433331 1 246888888887765
No 292
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=48.66 E-value=11 Score=36.18 Aligned_cols=43 Identities=28% Similarity=0.239 Sum_probs=28.2
Q ss_pred CCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 363 SFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 363 ~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
-+||||.||=.+...+|.-.+--.+-|=++||. +||+.|+++|
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~---~~a~~~~~~~ 253 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGK---HVAEQILEKL 253 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhH---HHHHHHHHHh
Confidence 379999999877644443110001222257999 9999999886
No 293
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=48.00 E-value=10 Score=41.00 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
++|||||-||+-+. ..||+ ..+-.++-.|+++|+ +|++.+.+.+
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr---~Ag~~aa~~~ 405 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGR---AAGLHLEKAL 405 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHH---HHHHHHHHHH
Confidence 47999999999765 46775 222344667889898 9998887653
No 294
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=47.95 E-value=11 Score=36.14 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=28.3
Q ss_pred CCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 364 FPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 364 i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
+||||.||=.....+|.-.+--.+-|=++||. +||+.|+++|.
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~---~~a~~~~~~~~ 255 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGK---KVAELILEKLK 255 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHH---HHHHHHHHHhh
Confidence 69999999876643443110001222257999 99999999885
No 295
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=47.90 E-value=74 Score=34.98 Aligned_cols=62 Identities=29% Similarity=0.306 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhcCC--EEEcCceeeeEEecCCC-CeEEEEEe-------CC--eEEecCEEEEcCChhh-HHHhhc
Q 010972 164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEER-CCISDVVC-------GK--ETYSAGAVVLAVGIST-LQELIK 226 (496)
Q Consensus 164 l~~aL~~~l~~~G~--~I~l~~~V~~I~~~~~~-g~v~~V~~-------~G--~~~~Ad~VV~A~p~~~-~~~Ll~ 226 (496)
+-+.|.+.+++.|+ +++.+++|++++.++++ ..|+ |++ +| ++++||.||-|-..+. +++.+.
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT-VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE-EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 55567777777765 78999999999876431 2243 444 24 5799999999999875 455553
No 296
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=47.67 E-value=47 Score=36.62 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=36.1
Q ss_pred cCC-EEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh-HHHhh
Q 010972 175 RGC-EFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 175 ~G~-~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
.+. .|+++++|++|+.++ +.|+ |++ +|+++.+|.||.|-..+. +.+.+
T Consensus 204 lg~~~i~~g~~V~~I~~~~--d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~~l 254 (668)
T PLN02927 204 VGEDVIRNESNVVDFEDSG--DKVT-VVLENGQRYEGDLLVGADGIWSKVRNNL 254 (668)
T ss_pred CCCCEEEcCCEEEEEEEeC--CEEE-EEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence 344 478999999998876 4575 555 677899999999999876 34433
No 297
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=46.33 E-value=16 Score=39.54 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=30.1
Q ss_pred CCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 361 FTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 361 ~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
.+.++|+|.+||-+.+ +.. .-.|+..|. .||+.|.+.+.
T Consensus 406 ~ts~~~Vfa~GD~~~g-~~~------v~~Av~~G~---~aA~~i~~~L~ 444 (564)
T PRK12771 406 MTGRPGVFAGGDMVPG-PRT------VTTAIGHGK---KAARNIDAFLG 444 (564)
T ss_pred cCCCCCEEeccCcCCC-chH------HHHHHHHHH---HHHHHHHHHHc
Confidence 4668999999997642 222 567888888 99999988885
No 298
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=46.16 E-value=66 Score=35.50 Aligned_cols=55 Identities=4% Similarity=-0.019 Sum_probs=37.1
Q ss_pred hHHHHHHHH-HhcCCEEEcCceeeeEEecCCCCeEEEEEe-C---C------------eEEecCEEEEcCChh
Q 010972 164 IFEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---K------------ETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l-~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~---G------------~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+ ++.|.+|++++.|++|..++++..+. +.+ + + +++++|.||+|+...
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~-v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVI-IGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEE-EEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 445555544 56899999999999998654311232 332 1 1 269999999998764
No 299
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.04 E-value=9.8 Score=41.35 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
++|||||-||+-+. ..||+ ..+-.++-.|++.|+ .|++.+.+..
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr---~Ag~~aa~~~ 423 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGR---AAGLHLQESL 423 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHH---HHHHHHHHHh
Confidence 67999999999765 46775 222234667889898 8888877653
No 300
>PRK07121 hypothetical protein; Validated
Probab=45.94 E-value=17 Score=38.57 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=29.3
Q ss_pred CCCCCEEEcCCCccCCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 362 TSFPNLFMAGDWITTRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.||+|||-||.-+...+|. ..+-.++-.|+.+|+ .|++.+.+.
T Consensus 447 ~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~Gr---iAg~~aa~~ 490 (492)
T PRK07121 447 APIPGLYAAGRCASGIASNGYVSGLSLADCSFFGR---RAGRHAAAR 490 (492)
T ss_pred CCcCceEecccccccCCCCCCCCccccchhHHHHH---HHHHHHHhh
Confidence 5899999999865543332 111223566778888 999988764
No 301
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=45.64 E-value=11 Score=40.92 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=32.1
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
+++||||-||+-+. ..||+ ..+-.++-.|+++|+ +|++.+.+..
T Consensus 368 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~---~Ag~~aa~~~ 413 (575)
T PRK05945 368 GLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGR---RTGAAIAEYV 413 (575)
T ss_pred CccCCeEeeeccccccccccccccchhHHHHHHHHH---HHHHHHHHHh
Confidence 57999999999765 46776 233344667888888 8888877643
No 302
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=45.47 E-value=12 Score=40.76 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=32.4
Q ss_pred CCCCCCCEEEcCCCccCCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 360 GFTSFPNLFMAGDWITTRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.+|.++|||.||+...+.||+ -.+-.++-.+++.|. +|++.+.+.
T Consensus 379 ~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~---~Ag~~aa~~ 424 (603)
T TIGR01811 379 QMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGY---FALPFTIPN 424 (603)
T ss_pred CcccCCCEEECcccccCcCCCccchhHHHHHHHHHHH---HHHHHHHHH
Confidence 357899999999965557776 222234567788888 888887764
No 303
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=45.28 E-value=8.9 Score=41.48 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=31.7
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
++|||||-||+-+. ..||+ ..+-.++-.|+++|+ +|++.+.+..
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr---~Ag~~aa~~~ 396 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGR---AAGLSAAEYA 396 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHH---HHHHHHHHhh
Confidence 68999999999765 46775 222223667788888 9998887653
No 304
>PRK09077 L-aspartate oxidase; Provisional
Probab=45.14 E-value=14 Score=39.77 Aligned_cols=46 Identities=24% Similarity=0.176 Sum_probs=33.1
Q ss_pred CCCCCCCEEEcCCCcc-CCCCCC-CCCCCCccccccCcChHHHHHHHHHHc
Q 010972 360 GFTSFPNLFMAGDWIT-TRHGSW-RGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~-~~~G~~-~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
.++++||||-||+-+. ..||+. .+-.++-.|++.|+ +|++.+.+..
T Consensus 362 ~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~---~Ag~~aa~~~ 409 (536)
T PRK09077 362 GRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGR---SAAEDILSRL 409 (536)
T ss_pred CccccCCEEecccccccccCCCccchhhhHHHHHHHHH---HHHHHHHHhh
Confidence 3478999999999764 467762 22334667788888 9999887653
No 305
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.88 E-value=11 Score=41.27 Aligned_cols=44 Identities=27% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCCCCCEEEcCCCccCCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 361 FTSFPNLFMAGDWITTRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 361 ~t~i~gL~lAGd~t~~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.++++|||.||+-+...||+ -.+-.++-.|++.|+ +|++.+.+.
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr---~Ag~~aa~~ 446 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGR---RAGLGAADY 446 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHH---HHHHHHHHH
Confidence 36899999999976566776 222334667788888 888887664
No 306
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=44.74 E-value=57 Score=38.01 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=36.4
Q ss_pred HHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC----------C----------eEEecCEEEEcCChh
Q 010972 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----------K----------ETYSAGAVVLAVGIS 219 (496)
Q Consensus 170 ~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~----------G----------~~~~Ad~VV~A~p~~ 219 (496)
+.+++.|++|++++.+.+|..+++ |++.+|.+. | .++++|.||+|+...
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~ 685 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK 685 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence 345677999999999999986544 677766431 2 258999999999754
No 307
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=44.51 E-value=10 Score=40.96 Aligned_cols=44 Identities=27% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
|+|||||-||+-+. ..||+ ..+-.++-.|+.+|+ +|++.+.+..
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~---~Ag~~aa~~~ 402 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGR---IAGEAAAEYA 402 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHH---HHHHHHHHHH
Confidence 78999999999664 35665 222234667788888 9998887654
No 308
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.51 E-value=12 Score=40.86 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=32.2
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
++|||||-||+-+. ..||+ ..+-.++-.|++.|+ +|++.+.+..
T Consensus 383 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~---~Ag~~aa~~~ 428 (598)
T PRK09078 383 AVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGR---AAALRAAEVI 428 (598)
T ss_pred CccCceeecccccccCCcCcccccchhHHHHHHHHH---HHHHHHHHhh
Confidence 57999999999765 46776 223334667888898 9998887654
No 309
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=44.35 E-value=49 Score=34.52 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.++..|+++..+ +|+.+. . ..+. |..+|+++.+|+||+|+...
T Consensus 92 ~~~~~~~~l~~~gV~~~~g-~~~~v~--~--~~v~-v~~~g~~~~~d~lIiATGs~ 141 (446)
T TIGR01424 92 LSGLYKRLLANAGVELLEG-RARLVG--P--NTVE-VLQDGTTYTAKKILIAVGGR 141 (446)
T ss_pred HHHHHHHHHHhCCcEEEEE-EEEEec--C--CEEE-EecCCeEEEcCEEEEecCCc
Confidence 3344555567789999876 565553 2 2343 44467789999999999864
No 310
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=43.75 E-value=86 Score=32.13 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe---C-----C--eEEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-----K--ETYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~---~-----G--~~~~Ad~VV~A~p~~~ 220 (496)
+-+.|.+.+.+.|++|+.++ |..++...+.+..++|+. + | .+++||.||.|.....
T Consensus 95 ~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 95 LDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred HHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 44557777778899998886 777754211022233442 1 3 3789999999998865
No 311
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.73 E-value=9.3 Score=41.42 Aligned_cols=44 Identities=23% Similarity=0.183 Sum_probs=31.0
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
+||+|||-||+-+. ..||+ ..+-.++-.|+++|+ +|++.+.+..
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr---~Ag~~aa~~~ 414 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGR---IAGEQAAEYA 414 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHH---HHHHHHHHHh
Confidence 45999999999765 36765 222234566788888 8888876643
No 312
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=43.11 E-value=44 Score=35.94 Aligned_cols=51 Identities=27% Similarity=0.359 Sum_probs=36.8
Q ss_pred HhcCCEEEcCceeeeEEecCCCCeEEEEEe--C-C---e-EEecCEEEEcCChhhHHHhh
Q 010972 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-K---E-TYSAGAVVLAVGISTLQELI 225 (496)
Q Consensus 173 ~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~--~-G---~-~~~Ad~VV~A~p~~~~~~Ll 225 (496)
+..+.+|++++.|++|..++ +++++|.. + + + .+.++.||++...-...+||
T Consensus 214 ~~~nl~v~t~a~v~ri~~~~--~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL 271 (542)
T COG2303 214 KRPNLTLLTGARVRRILLEG--DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL 271 (542)
T ss_pred cCCceEEecCCEEEEEEEEC--CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence 33458999999999999998 66777765 3 2 2 25778899987776555543
No 313
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=42.84 E-value=16 Score=39.54 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=32.4
Q ss_pred CCCCCEEEcCCCccCCCCC--CCCCCCCccccccCcChHHHHHHHHHHcCCCC
Q 010972 362 TSFPNLFMAGDWITTRHGS--WRGLMSPDSKLPTGWSTILEMEAFLKLFQWRK 412 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~--~~~~~~megAv~SG~~~~~AA~~il~~lg~~~ 412 (496)
+||||||-||.-+....|. ...-.++-.|+.+|+ .|++.+.+..+-++
T Consensus 522 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGr---iAg~~aa~~~~~~~ 571 (574)
T PRK12842 522 TPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGY---ITGRHLAGVAGGRK 571 (574)
T ss_pred CCcCCceecccccccCccCCCCCCcccHHHHHHHHH---HHHHHHHhhhcccc
Confidence 5899999999866543222 110112556778888 99999988775554
No 314
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.36 E-value=13 Score=40.32 Aligned_cols=44 Identities=25% Similarity=0.166 Sum_probs=31.6
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
+++||||-||+-+. ..||+ ..+-.++-.|++.|+ +|++.+.+..
T Consensus 373 t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~---~Ag~~aa~~~ 418 (583)
T PRK08205 373 TVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGR---RAGIAAAEYA 418 (583)
T ss_pred CCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHH---HHHHHHHHHh
Confidence 68999999999765 46775 222234667788888 8888877643
No 315
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=41.56 E-value=40 Score=37.10 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=37.5
Q ss_pred HHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChhh
Q 010972 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (496)
Q Consensus 169 ~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~~ 220 (496)
-+..+++|++++++.+|..|...+ . . |++ .|.++..|..|+|+....
T Consensus 66 ~dwy~~~~i~L~~~~~v~~idr~~--k-~--V~t~~g~~~~YDkLilATGS~p 113 (793)
T COG1251 66 NDWYEENGITLYTGEKVIQIDRAN--K-V--VTTDAGRTVSYDKLIIATGSYP 113 (793)
T ss_pred hhhHHHcCcEEEcCCeeEEeccCc--c-e--EEccCCcEeecceeEEecCccc
Confidence 355688999999999999998876 3 2 455 588999999999987654
No 316
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=41.19 E-value=16 Score=39.65 Aligned_cols=46 Identities=24% Similarity=0.143 Sum_probs=32.7
Q ss_pred CCCCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 360 GFTSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
.+|++||||-||+-.. +.||+ -.+-.++-.|++.|+ +|++.+.+..
T Consensus 366 ~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~---~ag~~aa~~~ 413 (580)
T TIGR01176 366 CETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGR---RAGEAAAERA 413 (580)
T ss_pred cccccCCeEeeecccccCcCCCccccchhHHHHHHHHH---HHHHHHHHhh
Confidence 4578999999999754 35776 222234667788898 9998887643
No 317
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=41.09 E-value=17 Score=39.25 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=32.8
Q ss_pred CCC-CCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 361 FTS-FPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 361 ~t~-i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
+++ +||||-||+-+. ..||+ ..+-.++-.|++.|+ +|++.+.+..
T Consensus 356 ~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~---~Ag~~aa~~~ 403 (566)
T PRK06452 356 RNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQ---VTGRTVVQFL 403 (566)
T ss_pred CcCCcCCeEecccccccCCCCcccccchHHHHHHHHHH---HHHHHHHHHH
Confidence 465 999999999765 46776 233334667889888 8888887654
No 318
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=40.82 E-value=77 Score=34.21 Aligned_cols=46 Identities=28% Similarity=0.216 Sum_probs=32.8
Q ss_pred HHhcCCEEEcCceeeeEEecCCCCeEEEEEe-----------------CC--eEEecCEEEEcCChh
Q 010972 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----------------GK--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 172 l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-----------------~G--~~~~Ad~VV~A~p~~ 219 (496)
+.+.|++|++++.+.+|..+++ +.+ +|++ .| .++++|.||+|+...
T Consensus 315 a~~~GVki~~~~~~~~i~~~~~-~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~ 379 (564)
T PRK12771 315 ALREGVEINWLRTPVEIEGDEN-GAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD 379 (564)
T ss_pred HHHcCCEEEecCCcEEEEcCCC-CEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence 4457999999999999986653 433 3321 12 368999999998754
No 319
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=40.62 E-value=21 Score=37.50 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=28.9
Q ss_pred CCCCCEEEcCCCccC-CCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 362 TSFPNLFMAGDWITT-RHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 362 t~i~gL~lAGd~t~~-~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
+||||||-||.-+.. .+|. ..+-.++-.|+.+|+ .|++.+.+.
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~---iag~~aa~~ 460 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGR---IAGEEAARH 460 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHH---HHHHHHHHH
Confidence 589999999986554 4443 111123455678888 999988764
No 320
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=40.22 E-value=15 Score=40.38 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=32.4
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
++|||||-||+-+. ..||+ ..+-.++-.|++.|+ +|++.+.+..
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr---~Ag~~aa~~~ 466 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGR---ACANRVAEIA 466 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHH---HHHHHHHHhh
Confidence 67999999999764 46776 222234677889898 9999887653
No 321
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=39.52 E-value=18 Score=35.77 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=37.3
Q ss_pred HHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCCCCCCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHH
Q 010972 321 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILE 400 (496)
Q Consensus 321 ~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~A 400 (496)
++-++.|++..++++.+-+ ..+..|.-.|.....--.. ..-+||+|||.-|.. .|+ +|+| .||+ .|
T Consensus 294 rVf~mIPgLeNAefvRyGv--mHRNtfinSP~lL~~tl~l-k~~p~l~fAGQitG~-EGY------veSa-A~Gl---la 359 (439)
T COG1206 294 RVFRMIPGLENAEFVRYGV--MHRNTFINSPKLLDPTLQL-KKRPNLFFAGQITGV-EGY------VESA-ASGL---LA 359 (439)
T ss_pred hhhhhcCCcchhhhhhccc--eecccccCChhhhhHHhhc-ccCCCcEEeeeeecc-hhh------hHHh-hhhH---HH
Confidence 3456789988655543322 2233343334322110011 234899999997754 677 6666 4555 44
Q ss_pred HHHHH
Q 010972 401 MEAFL 405 (496)
Q Consensus 401 A~~il 405 (496)
..-..
T Consensus 360 g~naa 364 (439)
T COG1206 360 GINAA 364 (439)
T ss_pred hhHHH
Confidence 44433
No 322
>PRK08401 L-aspartate oxidase; Provisional
Probab=39.24 E-value=16 Score=38.36 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=31.0
Q ss_pred CCCCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 360 GFTSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.++++||||-||+-+. +.||+ ..+-.++-.+++.|+ .|++.+.+.
T Consensus 319 ~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~---~ag~~aa~~ 365 (466)
T PRK08401 319 YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGL---EVARTISRE 365 (466)
T ss_pred CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHH---HHHHHHhhh
Confidence 3478999999999764 46676 222223445678888 888888653
No 323
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=38.64 E-value=29 Score=36.85 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=38.0
Q ss_pred HHHHHhHhcCCCCCCeeEeEEEEeeCCCc-eeeCCCCcCCCCCCCC-CCCCEEEcCCCccCCCCCCCCCCCCccccccCc
Q 010972 318 AVSYLSKCIKDFSTATVMDHKIRRFPKSL-THFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGW 395 (496)
Q Consensus 318 vl~~L~~~~P~~~~~~v~~~~v~~~~~a~-~~~~pG~~~~rp~~~t-~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~ 395 (496)
|..++-+-.|++..+++ .|+..|+ |.+.+. ....|.+++ .++|||+||.--.+ .|+ |-|...|.
T Consensus 317 VQ~~~irsipGlEna~i-----~rpgYAIEYD~v~p-~qL~~tLEtK~I~GLf~AGQINGT-tGY-------EEAAaQGl 382 (621)
T COG0445 317 VQEQIIRSIPGLENAEI-----LRPGYAIEYDYVDP-RQLKPTLETKKIKGLFFAGQINGT-TGY-------EEAAAQGL 382 (621)
T ss_pred HHHHHHHhCccccccee-----eccceeeeecccCh-hhcccchhhceecceEEcccccCC-chh-------HHHHhhhH
Confidence 34455666888875433 3443332 222221 123455555 48999999984433 344 44444443
Q ss_pred -ChHHHHHHHH
Q 010972 396 -STILEMEAFL 405 (496)
Q Consensus 396 -~~~~AA~~il 405 (496)
-|+.||..+.
T Consensus 383 iAGiNAal~~~ 393 (621)
T COG0445 383 IAGINAALKVQ 393 (621)
T ss_pred HHHHHHHHHhc
Confidence 1116665544
No 324
>PLN02815 L-aspartate oxidase
Probab=38.61 E-value=18 Score=39.30 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=32.5
Q ss_pred CCCCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 360 GFTSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.++++||||-||+-+. ..||+ ..+-.++-.+++.|+ +|++.+.+.
T Consensus 386 ~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr---~Ag~~aa~~ 432 (594)
T PLN02815 386 GETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFAR---RAVQPSIDH 432 (594)
T ss_pred CceecCCEEecccccccCCCCCCcchhhHHHHHHHHHH---HHHHHHHHH
Confidence 4578999999999764 46776 223334667778888 888887654
No 325
>PRK08071 L-aspartate oxidase; Provisional
Probab=38.03 E-value=15 Score=39.05 Aligned_cols=45 Identities=29% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCCCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 360 GFTSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.++++||||-||+-+. ..||+ ..+-.++-.+++.|+ +|++.+...
T Consensus 341 ~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~---~Ag~~aa~~ 387 (510)
T PRK08071 341 GETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGK---RAAEHILTK 387 (510)
T ss_pred CcccCCCeEEcccccccccCCCcccchHHHHHHHHHHH---HHHHHHHhh
Confidence 3478999999999764 36665 222234666778888 888887643
No 326
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=37.73 E-value=30 Score=38.12 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=29.9
Q ss_pred CCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcCC
Q 010972 361 FTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQW 410 (496)
Q Consensus 361 ~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg~ 410 (496)
.|..+|+|.+||-+.. +.. .-.|+..|. .||+.|.+.|.-
T Consensus 463 ~Ts~pgVfA~GDv~~g-~~~------v~~Ai~~G~---~AA~~I~~~L~g 502 (652)
T PRK12814 463 QTSVAGVFAGGDCVTG-ADI------AINAVEQGK---RAAHAIDLFLNG 502 (652)
T ss_pred cCCCCCEEEcCCcCCC-chH------HHHHHHHHH---HHHHHHHHHHcC
Confidence 4678999999997643 222 456778888 999999988853
No 327
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.65 E-value=14 Score=40.19 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=31.5
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
+++||||-||+-+. ..||+ ..+-.++-.|++.|+ +|++.+.+.
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr---~Ag~~aa~~ 425 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGR---AAGNHIVDH 425 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHH---HHHHHHHHH
Confidence 47999999999765 46776 222334667889898 999888764
No 328
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=37.39 E-value=69 Score=32.91 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeC----------------CeEEecCEEEEcCCh--hhHHHhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----------------KETYSAGAVVLAVGI--STLQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~----------------G~~~~Ad~VV~A~p~--~~~~~Ll 225 (496)
++.-|.+.+++.|++|.-+..+.+|..++| |.|.||-++ |-++.|+.-|.|-.- ....+++
T Consensus 185 ~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~ 263 (621)
T KOG2415|consen 185 LVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQII 263 (621)
T ss_pred HHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHH
Confidence 566677888899999999999999999887 788888762 335788888887554 3455665
Q ss_pred cc
Q 010972 226 KN 227 (496)
Q Consensus 226 ~~ 227 (496)
..
T Consensus 264 kk 265 (621)
T KOG2415|consen 264 KK 265 (621)
T ss_pred HH
Confidence 44
No 329
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=37.26 E-value=96 Score=35.87 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=33.9
Q ss_pred HHhcCCEEEcCceeeeEEecCCCCeEEEEEe------------------CC--eEEecCEEEEcCChh
Q 010972 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC------------------GK--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 172 l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~------------------~G--~~~~Ad~VV~A~p~~ 219 (496)
+.+.|+++++++.+++|..+++++++.++.+ .| .++.||.||+|+...
T Consensus 494 a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 494 ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence 3456999999999999976533245655432 12 358999999998753
No 330
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=37.15 E-value=16 Score=39.92 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
++|+|||-||+-+. ..||+ ..+-.++-.|++.|+ +|++.+.+..
T Consensus 400 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr---~Ag~~aa~~~ 445 (617)
T PTZ00139 400 KIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGR---AAANTVMEIL 445 (617)
T ss_pred CccCCceecccccccCcCCCcccchhhHHHHHHHHH---HHHHHHHHhh
Confidence 57999999999764 36775 222234667788888 9998887653
No 331
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.99 E-value=57 Score=33.35 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=32.4
Q ss_pred CCEEEcCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEcCChh
Q 010972 176 GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 176 G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G--~~~~Ad~VV~A~p~~ 219 (496)
..+++.++.|++++.+++ |++ .+.+ .| ++++.|+||+||.-.
T Consensus 292 ~v~l~~~~ev~~~~~~G~-g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGD-GRY-RLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CeeeccccceeeeecCCC-ceE-EEEEeeccCCCceEEEeeEEEEecccc
Confidence 358899999999998886 554 3544 13 478999999999876
No 332
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=36.82 E-value=60 Score=32.94 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=28.8
Q ss_pred CCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 176 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 176 G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
+..|++++.|+++ ++ +.|+ + .+|+++.||.||-|.+..
T Consensus 100 ~~~i~~~~~V~~v--~~--~~v~-l-~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 100 PEGVILGRKAVGL--DA--DGVD-L-APGTRINARSVIDCRGFK 137 (370)
T ss_pred cccEEecCEEEEE--eC--CEEE-E-CCCCEEEeeEEEECCCCC
Confidence 3348889999988 33 2343 3 578899999999999876
No 333
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=36.71 E-value=31 Score=35.78 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=35.3
Q ss_pred HHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCCCCCC-CCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHH
Q 010972 321 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTIL 399 (496)
Q Consensus 321 ~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~~t-~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~ 399 (496)
++-+..|++..++++.+-+..- ..|...|-.. .+..++ .++||||||+-+.+ .|+ . -|+.+|. .
T Consensus 289 ~~~r~ipgle~a~~~r~g~~~~--~~~i~~p~~L--~~~l~~k~~~~lf~AGQi~G~-~GY------~-Eaaa~Gl---~ 353 (433)
T TIGR00137 289 RVFRLIPGLENAEFVRMGVMHR--NTFINSPQLL--TASLHFKDRQTLFFAGQLTGV-EGY------V-ASTAGGW---L 353 (433)
T ss_pred HHHhcCcCccceEEeecceEEe--eeeeCCHHHh--hHHhccCCCCCEEECcccccc-hHH------H-HHHHHHH---H
Confidence 3445789998655543221100 0111112211 223333 47999999997654 566 4 4446666 5
Q ss_pred HHHHHH
Q 010972 400 EMEAFL 405 (496)
Q Consensus 400 AA~~il 405 (496)
|+--+.
T Consensus 354 agina~ 359 (433)
T TIGR00137 354 AGINAA 359 (433)
T ss_pred HHHHHH
Confidence 444333
No 334
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=36.42 E-value=21 Score=39.22 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=29.8
Q ss_pred CCCCCCCEEEcCCCccCCCCC-CCCCCCCccccccCcChHHHHHH
Q 010972 360 GFTSFPNLFMAGDWITTRHGS-WRGLMSPDSKLPTGWSTILEMEA 403 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~~~~G~-~~~~~~megAv~SG~~~~~AA~~ 403 (496)
.+|.++|||.||+-..+.||+ -.+-.++-.|++.|+ +|++.
T Consensus 415 ~~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~---~ag~~ 456 (640)
T PRK07573 415 LMSTIPGLFVIGEANFSDHGANRLGASALMQGLADGY---FVLPY 456 (640)
T ss_pred CccccCCEEECccccccCCCcccccchhHHHHHHHHH---HHhHH
Confidence 357899999999976568888 233344667788888 77655
No 335
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=36.25 E-value=19 Score=39.67 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcCC
Q 010972 361 FTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQW 410 (496)
Q Consensus 361 ~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg~ 410 (496)
+|.++|+|.+||-+.+ +.. +-.|+..|. .||+.|.+.|+.
T Consensus 614 ~Ts~~gVfAaGD~~~g-~~~------vv~Ai~~Gr---~AA~~I~~~L~~ 653 (654)
T PRK12769 614 QTSNPKIFAGGDAVRG-ADL------VVTAMAEGR---HAAQGIIDWLGV 653 (654)
T ss_pred ccCCCCEEEcCCcCCC-CcH------HHHHHHHHH---HHHHHHHHHhCc
Confidence 4678999999997643 222 456788888 999999988763
No 336
>PLN02785 Protein HOTHEAD
Probab=34.82 E-value=91 Score=33.90 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=36.6
Q ss_pred HHhcCCEEEcCceeeeEEecCCC--CeEEEEEe---CCeEE-------ecCEEEEcCChhhHHHhh
Q 010972 172 MRTRGCEFLDGRRVTDFIYDEER--CCISDVVC---GKETY-------SAGAVVLAVGISTLQELI 225 (496)
Q Consensus 172 l~~~G~~I~l~~~V~~I~~~~~~--g~v~~V~~---~G~~~-------~Ad~VV~A~p~~~~~~Ll 225 (496)
....+.+|.+++.|++|..++++ ++++||+. +|.+. .++.||++...-...+||
T Consensus 230 ~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL 295 (587)
T PLN02785 230 GNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQML 295 (587)
T ss_pred cCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHH
Confidence 33456899999999999987531 27889986 35432 235788887765544443
No 337
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=34.53 E-value=1.6e+02 Score=30.91 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCC-CCeEEEEEe--C------C--eEEecCEEEEcCChhh-HHHhh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RCCISDVVC--G------K--ETYSAGAVVLAVGIST-LQELI 225 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~-~g~v~~V~~--~------G--~~~~Ad~VV~A~p~~~-~~~Ll 225 (496)
+-+.|.+.+++.|++++.+ .|++|...++ ++.+ .|++ . | .+++||.||-|..... +++.+
T Consensus 134 ~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~-~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~l 205 (450)
T PLN00093 134 LDSFLRERAQSNGATLING-LFTRIDVPKDPNGPY-VIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDI 205 (450)
T ss_pred HHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcE-EEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHh
Confidence 4455777777889999876 4878875321 1223 2443 1 3 4789999999998765 34433
No 338
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=34.37 E-value=18 Score=38.43 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=29.4
Q ss_pred CCCCCEEEcCCCccCCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 362 TSFPNLFMAGDWITTRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
+||||||-||.-+...+|. ..+-.++-.|+.+|+ .|++.+.+.
T Consensus 459 ~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~Gr---iAg~~aa~~ 502 (506)
T PRK06481 459 SPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGR---QAGTQSAEF 502 (506)
T ss_pred CEeCCeeeceeccccCCCCCCCchhhHHHHHHHHH---HHHHHHHHh
Confidence 6899999999976654543 111123556678888 888888654
No 339
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=34.05 E-value=96 Score=30.90 Aligned_cols=52 Identities=29% Similarity=0.493 Sum_probs=38.9
Q ss_pred hHHHHHHHHHh---cC-CEEEcCceeeeEEecCCCCeEEEEEeC------------------Ce-EEecCEEEEcCC
Q 010972 164 IFEPWMDSMRT---RG-CEFLDGRRVTDFIYDEERCCISDVVCG------------------KE-TYSAGAVVLAVG 217 (496)
Q Consensus 164 l~~aL~~~l~~---~G-~~I~l~~~V~~I~~~~~~g~v~~V~~~------------------G~-~~~Ad~VV~A~p 217 (496)
+.+++++++++ .| .++++.++|.++...+ |+|++|.-+ |. ++.|.+||++..
T Consensus 151 vl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~--grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SG 225 (552)
T COG3573 151 VLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTG--GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASG 225 (552)
T ss_pred hhhHHHHHHHHHHhCCceEEEeeeeccceEeeC--CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecC
Confidence 56777777765 34 6899999999999988 789887521 22 568888999764
No 340
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=33.87 E-value=88 Score=32.67 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 166 ~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
+.+...+++.|+++++++.+. .++ +. |.++|+++.+|+||+|+...
T Consensus 95 ~~~~~~l~~~gv~~~~g~~~~---~~~--~~---v~v~~~~~~~d~vIiAtGs~ 140 (450)
T TIGR01421 95 GIYQKNLEKNKVDVIFGHARF---TKD--GT---VEVNGRDYTAPHILIATGGK 140 (450)
T ss_pred HHHHHHHHhCCCEEEEEEEEE---ccC--CE---EEECCEEEEeCEEEEecCCC
Confidence 334455677899999998652 222 33 34577789999999999864
No 341
>PRK12839 hypothetical protein; Provisional
Probab=33.78 E-value=26 Score=37.98 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=30.7
Q ss_pred CCCCCEEEcCCCccCCCCC-C-CCCCCCccccccCcChHHHHHHHHHHcCC
Q 010972 362 TSFPNLFMAGDWITTRHGS-W-RGLMSPDSKLPTGWSTILEMEAFLKLFQW 410 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~-~-~~~~~megAv~SG~~~~~AA~~il~~lg~ 410 (496)
+||+|||-||.-+....|. . .+-.++-.|+.+|+ .|++.+.+.-|.
T Consensus 523 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGr---iAg~~aA~~~~~ 570 (572)
T PRK12839 523 TPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGY---IAGRELAGSTGV 570 (572)
T ss_pred CCcCCceeccccccccccCCCCCcccchhHHHHHHH---HHHHHHHhcccc
Confidence 5899999999866542221 0 01113566778888 999999876553
No 342
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=33.24 E-value=27 Score=38.52 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=32.7
Q ss_pred CCC-CCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 360 GFT-SFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 360 ~~t-~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
.++ +++|||-||+-+. ..||+ ..+-.++-.|++.|+ .|++.+.+..
T Consensus 381 ~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~---iAg~~aa~~~ 429 (657)
T PRK08626 381 GESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGM---IVGKYVADFC 429 (657)
T ss_pred CCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHH---HHHHHHHHHh
Confidence 345 5999999999765 36776 233334677888888 8888877653
No 343
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=32.09 E-value=65 Score=33.45 Aligned_cols=73 Identities=18% Similarity=0.104 Sum_probs=39.3
Q ss_pred HHhHhcCCCCCCeeEeEEEEeeCCCceeeCCCCcCCCCCCCC-CCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHH
Q 010972 321 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTIL 399 (496)
Q Consensus 321 ~L~~~~P~~~~~~v~~~~v~~~~~a~~~~~pG~~~~rp~~~t-~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~ 399 (496)
.+-+..|++..+++...-+..- ..|...|.... +..++ .++||||||+-+.. .|+ +-|+.+|. .
T Consensus 290 ~~~r~Ipgle~a~~~r~G~~~~--~~~i~~p~~l~--~~l~~k~~~~l~~AGqi~g~-~Gy-------~ea~a~G~---~ 354 (436)
T PRK05335 290 RVFRMIPGLENAEFVRYGVMHR--NTFINSPKLLD--PTLQLKKRPNLFFAGQITGV-EGY-------VESAASGL---L 354 (436)
T ss_pred HHHhcccchhceEEEeceEEee--ccccCChhhCc--hhccccCCCCEEeeeeecCc-hHH-------HHHHHHHH---H
Confidence 3445789987655543222111 11111222211 22233 47999999997643 565 45557787 7
Q ss_pred HHHHHHHHc
Q 010972 400 EMEAFLKLF 408 (496)
Q Consensus 400 AA~~il~~l 408 (496)
|+..+...+
T Consensus 355 Ag~n~~~~~ 363 (436)
T PRK05335 355 AGINAARLA 363 (436)
T ss_pred HHHHHHHHh
Confidence 777666554
No 344
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=31.76 E-value=50 Score=35.92 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=22.8
Q ss_pred CCCCC-CCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHH
Q 010972 359 RGFTS-FPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAF 404 (496)
Q Consensus 359 ~~~t~-i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~i 404 (496)
..++. ++|||+||+-.. ..|+ +.|..+|. .|+-.+
T Consensus 351 ~le~k~~~gLf~AGqi~G-t~Gy-------~eAaa~Gl---~Ag~na 386 (617)
T TIGR00136 351 TLETKLIQGLFFAGQING-TTGY-------EEAAAQGL---MAGINA 386 (617)
T ss_pred hheeCCCCCeEEccccCC-cchH-------HHHHHHHH---HHHHHH
Confidence 34444 899999999554 3454 56667777 555433
No 345
>PRK12831 putative oxidoreductase; Provisional
Probab=31.70 E-value=24 Score=37.17 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=30.0
Q ss_pred CCCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 360 GFTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
.+|.++|+|.+||-+.+ +.. +-.|+..|. .||+.|.+.|+
T Consensus 422 ~~Ts~pgVfAaGD~~~g-~~~------v~~Ai~~G~---~AA~~I~~~L~ 461 (464)
T PRK12831 422 GLTSKEGVFAGGDAVTG-AAT------VILAMGAGK---KAAKAIDEYLS 461 (464)
T ss_pred CccCCCCEEEeCCCCCC-chH------HHHHHHHHH---HHHHHHHHHhc
Confidence 34678999999997643 222 456778888 99999988773
No 346
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=31.52 E-value=31 Score=40.14 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcCC
Q 010972 360 GFTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQW 410 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg~ 410 (496)
.+|.++|+|.+||-+.+ +.. +-.|+..|+ .||..|.+.|.-
T Consensus 716 ~~Ts~pgVFAaGDv~~G-~~~------vv~Ai~~Gr---~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVTG-GAT------VILAMGAGR---RAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEecCcCCC-ccH------HHHHHHHHH---HHHHHHHHHHhc
Confidence 34778999999997643 222 457778888 999999998853
No 347
>PRK07512 L-aspartate oxidase; Provisional
Probab=31.26 E-value=19 Score=38.50 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=31.0
Q ss_pred CCCCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 360 GFTSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.+++++|||-||+-+. ..||+ ..+-.++-.|++.|+ .|++.+.+.
T Consensus 350 ~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~---~ag~~aa~~ 396 (513)
T PRK07512 350 GRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAA---RAAEDIAGT 396 (513)
T ss_pred CccccCCEEecccccccCCCcccchHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3478999999999753 45665 222223556678888 888888765
No 348
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=31.23 E-value=83 Score=32.78 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=38.1
Q ss_pred HHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCCh
Q 010972 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (496)
Q Consensus 168 L~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~ 218 (496)
.-+..++.|.++++++.|+++...+ .. |.+ +|+++..+..|+||..
T Consensus 133 ~~e~Yke~gIe~~~~t~v~~~D~~~--K~---l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 133 TPEFYKEKGIELILGTSVVKADLAS--KT---LVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred ChhhHhhcCceEEEcceeEEeeccc--cE---EEeCCCceeecceEEEeecC
Confidence 3456788999999999999999876 33 445 6899999999999987
No 349
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=31.19 E-value=28 Score=37.82 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=30.1
Q ss_pred CCCCCEEEcCCCccCCCCC--CCCCCCCccccccCcChHHHHHHHHHHcCCC
Q 010972 362 TSFPNLFMAGDWITTRHGS--WRGLMSPDSKLPTGWSTILEMEAFLKLFQWR 411 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~--~~~~~~megAv~SG~~~~~AA~~il~~lg~~ 411 (496)
+||||||-||.-+....|. ..+-.++-.|+.+|+ .|++.+.+.+...
T Consensus 526 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGr---iAg~~aa~~~~~~ 574 (581)
T PRK06134 526 QPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGY---IAGRHIAGASGYE 574 (581)
T ss_pred CCcCcceeccccccccccCCcCCcchhHHHHHHHHH---HHHHHHhhcCCcc
Confidence 5899999999755432221 001112556778888 9999998765433
No 350
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=30.77 E-value=30 Score=36.44 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=29.1
Q ss_pred CCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 361 FTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 361 ~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
+|..+|+|.+||-+.+ +.. +..|+..|. .||+.|.+.|+
T Consensus 428 ~T~~~gVfa~GD~~~~-~~~------~~~Ai~~G~---~aA~~i~~~L~ 466 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRG-ADL------VVTAVAEGR---QAAQGILDWLG 466 (467)
T ss_pred cCCCCCEEEECCcCCC-ccH------HHHHHHHHH---HHHHHHHHHhc
Confidence 4568999999997643 122 346778888 99999998775
No 351
>PRK06444 prephenate dehydrogenase; Provisional
Probab=30.46 E-value=90 Score=28.60 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.9
Q ss_pred ecCEEEEcCChhhHHHhhcc
Q 010972 208 SAGAVVLAVGISTLQELIKN 227 (496)
Q Consensus 208 ~Ad~VV~A~p~~~~~~Ll~~ 227 (496)
.||.||+|+|+..+.+++..
T Consensus 31 ~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 31 KADHAFLSVPIDAALNYIES 50 (197)
T ss_pred CCCEEEEeCCHHHHHHHHHH
Confidence 48999999999998877654
No 352
>PRK07804 L-aspartate oxidase; Provisional
Probab=30.38 E-value=21 Score=38.41 Aligned_cols=45 Identities=29% Similarity=0.178 Sum_probs=30.8
Q ss_pred CCCCCCCEEEcCCCcc-CCCCCC-CCCCCCccccccCcChHHHHHHHHHH
Q 010972 360 GFTSFPNLFMAGDWIT-TRHGSW-RGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~-~~~G~~-~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.+|++||||-||+-+. ..||+. .+-.++-.++..|. .|++.+.+.
T Consensus 366 ~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~---~ag~~aa~~ 412 (541)
T PRK07804 366 GRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGE---RAGAAAAAH 412 (541)
T ss_pred CcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHH---HHHHHHHHh
Confidence 3478999999999764 467762 22223555667787 888887654
No 353
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=30.06 E-value=66 Score=35.03 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=32.1
Q ss_pred HHhHhcCCCCCCeeEeEEEEeeCCCc-eeeCCCCcCCCCCCCC-CCCCEEEcCCCccCCCCCCCCCCCCccccccCc
Q 010972 321 YLSKCIKDFSTATVMDHKIRRFPKSL-THFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGW 395 (496)
Q Consensus 321 ~L~~~~P~~~~~~v~~~~v~~~~~a~-~~~~pG~~~~rp~~~t-~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~ 395 (496)
++-+..|++..++++ |...+. |.+.. .....+.+++ .++|||+||+-..+ .|+ |-|+.+|.
T Consensus 320 ~~~r~ipGle~a~i~-----r~gy~ieyd~i~-p~~L~~~Le~k~~~~lf~AGQinGt-~GY-------eEaaaqGl 382 (618)
T PRK05192 320 EMLRSIPGLENAEIL-----RPGYAIEYDYVD-PRQLKPTLETKKIKGLFFAGQINGT-TGY-------EEAAAQGL 382 (618)
T ss_pred HHHhcCcCccceeEe-----ecccceeecccC-hhhcchhheecCCCCeEECcccCCC-hHH-------HHHHHHHH
Confidence 445668988754442 322221 12211 1112344444 47999999996554 465 45545555
No 354
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=29.83 E-value=38 Score=36.51 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 361 FTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 361 ~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
++.++|+|.+||-+...... +..|+..|. .||..+.+.+
T Consensus 270 ~Ts~p~IyAaGDv~~~~~~~------v~~A~~~G~---~Aa~~i~~~l 308 (555)
T TIGR03143 270 ETNVPGVYAAGDLRPKELRQ------VVTAVADGA---IAATSAERYV 308 (555)
T ss_pred ccCCCCEEEceeccCCCcch------heeHHhhHH---HHHHHHHHHH
Confidence 35689999999965321122 356778888 8888876555
No 355
>PLN02852 ferredoxin-NADP+ reductase
Probab=29.67 E-value=36 Score=36.05 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=30.2
Q ss_pred CCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 361 FTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 361 ~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
.|+++|+|.|||-..+..|. +-.++..+. .+|+.|++++.
T Consensus 383 ~T~ipGvyAaGDi~~Gp~gv------I~t~~~dA~---~ta~~i~~d~~ 422 (491)
T PLN02852 383 ADTEPGLYVVGWLKRGPTGI------IGTNLTCAE---ETVASIAEDLE 422 (491)
T ss_pred ccCCCCEEEeeeEecCCCCe------eeecHhhHH---HHHHHHHHHHH
Confidence 36789999999977653344 555567667 99999999873
No 356
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=29.53 E-value=27 Score=36.49 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=28.1
Q ss_pred CCCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 360 GFTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
.+|.++|+|.+||-+.. +.. +-.|+..|. .||+.|.+.|
T Consensus 411 ~~Ts~~~VfA~GD~~~g-~~~------v~~Ai~~G~---~AA~~I~~~L 449 (449)
T TIGR01316 411 QRTSIPGVFAGGDIILG-AAT------VIRAMGQGK---RAAKSINEYL 449 (449)
T ss_pred CccCCCCEEEecCCCCC-cHH------HHHHHHHHH---HHHHHHHhhC
Confidence 34678999999997642 222 456778888 9999987653
No 357
>PRK06116 glutathione reductase; Validated
Probab=29.39 E-value=97 Score=32.24 Aligned_cols=46 Identities=17% Similarity=0.393 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 166 ~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+.+.+.|++++.++ |+.+ +. ..+ +++|+++.+|+||+|+...
T Consensus 97 ~~~~~~l~~~gv~~~~g~-~~~v--~~--~~v---~~~g~~~~~d~lViATGs~ 142 (450)
T PRK06116 97 GSYRNGLENNGVDLIEGF-ARFV--DA--HTV---EVNGERYTADHILIATGGR 142 (450)
T ss_pred HHHHHHHHhCCCEEEEEE-EEEc--cC--CEE---EECCEEEEeCEEEEecCCC
Confidence 334445566799998885 4444 22 333 3477889999999999864
No 358
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=29.28 E-value=1.1e+02 Score=31.60 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEE---------eCCeEEecCEEEEcCChhh
Q 010972 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV---------CGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 167 aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~---------~~G~~~~Ad~VV~A~p~~~ 220 (496)
++...++..|.++ ...+|++|..++ ..|. +. .+|.++.+|++|+|+....
T Consensus 67 ~~~~~~~~~~~~~-i~~~V~~Id~~~--~~v~-~~~~~~~~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 67 PVRPALAKLPNRY-LRAVVYDVDFEE--KRVK-CGVVSKSNNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred HHHHHhccCCeEE-EEEEEEEEEcCC--CEEE-EecccccccccCCceEecCCEEEECCCccc
Confidence 3444455556665 456899998776 4443 31 1356899999999998753
No 359
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=29.01 E-value=1.3e+02 Score=31.86 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=16.5
Q ss_pred cCCE-EEcCceeeeEEecCCCCeEEEEE
Q 010972 175 RGCE-FLDGRRVTDFIYDEERCCISDVV 201 (496)
Q Consensus 175 ~G~~-I~l~~~V~~I~~~~~~g~v~~V~ 201 (496)
.|.+ +++++.+.+|..+++ |++.+|+
T Consensus 349 ~gv~~~~~~~~~~~i~~~~~-g~v~~v~ 375 (485)
T TIGR01317 349 YGRDPREYSILTKEFIGDDE-GKVTALR 375 (485)
T ss_pred cCccceEEecCcEEEEEcCC-CeEEEEE
Confidence 4544 457888888876543 5676665
No 360
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=28.67 E-value=1.4e+02 Score=31.38 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCEEEcCceeeeEE--ecCCCCeEEEEEe-CCe--EEecCEEEEcCChh
Q 010972 167 PWMDSMRTRGCEFLDGRRVTDFI--YDEERCCISDVVC-GKE--TYSAGAVVLAVGIS 219 (496)
Q Consensus 167 aL~~~l~~~G~~I~l~~~V~~I~--~~~~~g~v~~V~~-~G~--~~~Ad~VV~A~p~~ 219 (496)
.+.+.++..|++++.++.+ .+. .++ .++. |.+ +|+ ++.+|+||+|+...
T Consensus 97 ~~~~~l~~~gV~~~~g~~~-~~~~~~~~--~~v~-V~~~~g~~~~~~~d~lViATGs~ 150 (466)
T PRK07845 97 DIRARLEREGVRVIAGRGR-LIDPGLGP--HRVK-VTTADGGEETLDADVVLIATGAS 150 (466)
T ss_pred HHHHHHHHCCCEEEEEEEE-EeecccCC--CEEE-EEeCCCceEEEecCEEEEcCCCC
Confidence 3445566779999887643 333 333 3453 555 454 68999999999874
No 361
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=28.62 E-value=32 Score=36.21 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=29.8
Q ss_pred CCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 361 FTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 361 ~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
+|..+|+|.+||-+.+ +.. ...|+..|. .||..|.+.|+
T Consensus 427 ~Ts~~gVfa~GD~~~g-~~~------~~~Av~~G~---~AA~~i~~~L~ 465 (471)
T PRK12810 427 QTSNPKVFAAGDMRRG-QSL------VVWAIAEGR---QAARAIDAYLM 465 (471)
T ss_pred cCCCCCEEEccccCCC-chh------HHHHHHHHH---HHHHHHHHHHh
Confidence 4678999999997653 222 456788888 99999998874
No 362
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=27.21 E-value=29 Score=34.35 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=26.3
Q ss_pred CCCCCEEEcCCCccCCCCCCCCCCCCc-----cccccCcChHHHHHHHH
Q 010972 362 TSFPNLFMAGDWITTRHGSWRGLMSPD-----SKLPTGWSTILEMEAFL 405 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~~~~~~~me-----gAv~SG~~~~~AA~~il 405 (496)
+|+||||-||.-...+.|..-+++++| |.+-||+ .|-+.+.
T Consensus 504 qPvpgLyAaGEvAGFGGGG~HGY~ALEGTFLGgCiFSGR---aAGRaaa 549 (552)
T COG3573 504 QPVPGLYAAGEVAGFGGGGVHGYRALEGTFLGGCIFSGR---AAGRAAA 549 (552)
T ss_pred CCCcchhhcchhcccCCCcccchhhhccceecceeecch---hhhhhhc
Confidence 689999999986553333345555555 4567776 5555543
No 363
>PRK07395 L-aspartate oxidase; Provisional
Probab=27.15 E-value=31 Score=37.21 Aligned_cols=44 Identities=23% Similarity=0.113 Sum_probs=30.0
Q ss_pred CCCCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHH
Q 010972 360 GFTSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLK 406 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~ 406 (496)
.+|+++|||.||+-+. +.||+ ..+-.++-.+++.|. +|++.+.+
T Consensus 356 ~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~---~a~~~~~~ 401 (553)
T PRK07395 356 NQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAA---QLAQLELP 401 (553)
T ss_pred CcccCCCEEECccccccCCCcccchHHHHHHHHHHHHH---HHHHHHHh
Confidence 3478999999999764 46777 222233455667787 88887753
No 364
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=27.06 E-value=63 Score=29.92 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=31.2
Q ss_pred CCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcCCCCc
Q 010972 362 TSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQWRKM 413 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg~~~~ 413 (496)
.-+||.+++|-.+....|+-.+--++-+-+.||. .||+++|+.++.+..
T Consensus 274 evvpgMiv~GMEvaE~DGanRMGPTFGaMm~SG~---kAaq~aLk~f~~~~a 322 (328)
T KOG2960|consen 274 EVVPGMIVAGMEVAELDGANRMGPTFGAMMLSGV---KAAQQALKHFAAPNA 322 (328)
T ss_pred hccCceEEeeeeeeeccCCcccCcchhhhhhcch---hHHHHHHHHhcCccc
Confidence 4578888888776632333100001222258999 999999999987763
No 365
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=26.66 E-value=37 Score=36.61 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=27.7
Q ss_pred CCCCCEEEcCCCccCCCCC-CCC-CCCCccccccCcChHHHHHHHHH
Q 010972 362 TSFPNLFMAGDWITTRHGS-WRG-LMSPDSKLPTGWSTILEMEAFLK 406 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~-~~~-~~~megAv~SG~~~~~AA~~il~ 406 (496)
.||||||-||.-+...+|. ..+ -.++-.|+.+|+ .|++++.+
T Consensus 512 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~Gr---iAg~~aa~ 555 (557)
T PRK07843 512 SVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGY---LAALDIAA 555 (557)
T ss_pred CCcCCceeccccccccccCCcCccccchhhHHHHHH---HHHHHHhh
Confidence 5899999999976543322 111 112456678888 99998865
No 366
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=26.44 E-value=46 Score=35.95 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=29.4
Q ss_pred CCCCCEEEcCCCccCCCCC-CCC-CCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWITTRHGS-WRG-LMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~-~~~-~~~megAv~SG~~~~~AA~~il~~l 408 (496)
.||+|||.||.-+...+|. ..+ -.++-.|+.+|+ .|++.+.+..
T Consensus 505 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~Gr---iAg~~aa~~~ 550 (557)
T PRK12844 505 SVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGY---IAALHAAGAR 550 (557)
T ss_pred CCccceeeccccccccccCCCCcCccchHHHHHHHH---HHHHHHHhcc
Confidence 5899999999866543221 111 113566778888 9999987653
No 367
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=25.73 E-value=31 Score=37.28 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCCCCEEEcCCCccCCCCC-CCC-CCCCccccccCcChHHHHHHHHH
Q 010972 362 TSFPNLFMAGDWITTRHGS-WRG-LMSPDSKLPTGWSTILEMEAFLK 406 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~-~~~-~~~megAv~SG~~~~~AA~~il~ 406 (496)
.||+|||-||.-+...+|. ..+ -.++-.|+.+|+ .|++.+.+
T Consensus 520 ~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGr---iAg~~aa~ 563 (564)
T PRK12845 520 SVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGY---IAAQDAAA 563 (564)
T ss_pred CCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHH---HHHHHHhc
Confidence 5899999999876543322 111 113556778888 99988753
No 368
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=25.53 E-value=50 Score=25.48 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=17.7
Q ss_pred cccceeecccccccccchHHHHHHhh
Q 010972 431 ERSFLYQITSFSEPIIEYEDFLRQYQ 456 (496)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (496)
..+|-++|++.+|||--|.+|+..|.
T Consensus 53 g~~~~~~i~~L~epiDVY~~wiD~~~ 78 (81)
T PF05129_consen 53 GESFQTKINPLSEPIDVYSEWIDACE 78 (81)
T ss_dssp --EEEEE--SS--TTHHHHHHHHHHH
T ss_pred CCeEEEccCccCcccchhHHHHHHHH
Confidence 46788999999999999999998764
No 369
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=25.21 E-value=44 Score=36.22 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=28.7
Q ss_pred CCCCCEEEcCCCccCCCCC-CCC-CCCCccccccCcChHHHHHHHHHHc
Q 010972 362 TSFPNLFMAGDWITTRHGS-WRG-LMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~-~~~-~~~megAv~SG~~~~~AA~~il~~l 408 (496)
+||||||-||.-+...+|. ..+ -.++-.|+.+|+ .|++.+.+..
T Consensus 527 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGr---iAg~~aa~~~ 572 (578)
T PRK12843 527 QPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAY---LAARHAAKRT 572 (578)
T ss_pred CCcCCceeccccccccccCCCCCcccchHHHHHHHH---HHHHHHHHhh
Confidence 5899999999766542222 100 112445778888 9999887764
No 370
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=25.00 E-value=40 Score=33.81 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=28.5
Q ss_pred CCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 361 FTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 361 ~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
++..+|+|.+||-+.. ++. +..|+..|. .||+.|.+.|
T Consensus 312 ~t~~~~vyaiGD~~~~-~~~------~~~A~~~g~---~aa~~i~~~l 349 (352)
T PRK12770 312 MTSREGVFAAGDVVTG-PSK------IGKAIKSGL---RAAQSIHEWL 349 (352)
T ss_pred ccCCCCEEEEcccccC-cch------HHHHHHHHH---HHHHHHHHHH
Confidence 3567999999997642 333 567778888 9999998776
No 371
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=24.83 E-value=43 Score=34.75 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=27.2
Q ss_pred CCCCCEEEcCCCcc-CCCCC-CCCCCCCccccccCcChHHHHHHHHHH
Q 010972 362 TSFPNLFMAGDWIT-TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKL 407 (496)
Q Consensus 362 t~i~gL~lAGd~t~-~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~ 407 (496)
.||||||-||.-+. ..+|. ..+-.++-.|+.+|+ .|++.+.+.
T Consensus 385 ~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~Gr---iAg~~aa~~ 429 (432)
T TIGR02485 385 VAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGR---IAGRAAARL 429 (432)
T ss_pred CCCCCeeecccccccccccCCCccchhhHHHHHHHH---HHHHHHHHh
Confidence 58999999998643 23332 111112455678888 998887654
No 372
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=24.34 E-value=35 Score=37.49 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=28.9
Q ss_pred CCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 361 FTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 361 ~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
+|.++|+|.+||-+.+ +.. +-.|+..|+ .||+.|++.|
T Consensus 597 ~Ts~~gVfA~GD~~~g-~~~------vv~Ai~~Gr---~AA~~i~~~l 634 (639)
T PRK12809 597 QTHLKKVFAGGDAVHG-ADL------VVTAMAAGR---QAARDMLTLF 634 (639)
T ss_pred ccCCCCEEEcCCCCCC-chH------HHHHHHHHH---HHHHHHHHHH
Confidence 4678999999997643 222 456788888 9999999876
No 373
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=23.85 E-value=38 Score=40.14 Aligned_cols=47 Identities=21% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCCCCEEEcCCCccCCCCC-CCCCCCCccccccCcChHHHHHHHHHHcCCC
Q 010972 362 TSFPNLFMAGDWITTRHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLFQWR 411 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~-~~~~~~megAv~SG~~~~~AA~~il~~lg~~ 411 (496)
.||+|||-||.-+...+|. ..+-.++-.|+.+|+ .|++.+.+.+.-.
T Consensus 858 ~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGr---iAG~~aa~~~~~~ 905 (1167)
T PTZ00306 858 RPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGK---IAGDRAATILQKK 905 (1167)
T ss_pred ceeCceEecceeccccccCCCCchhhHHHHHHHHH---HHHHHHHHHHhcc
Confidence 5899999999976543332 111112445678888 9999888776433
No 374
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=23.42 E-value=34 Score=36.45 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=27.9
Q ss_pred CCCCCEEEcCCCccCCCCC--CCCCCCCccccccCcChHHHHHHHHH
Q 010972 362 TSFPNLFMAGDWITTRHGS--WRGLMSPDSKLPTGWSTILEMEAFLK 406 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~--~~~~~~megAv~SG~~~~~AA~~il~ 406 (496)
.||||||-||.-+...+|. ..+-.++-.|+.+|+ .|++.+.+
T Consensus 467 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGr---iAg~~aa~ 510 (513)
T PRK12837 467 RPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSH---LAALDMAG 510 (513)
T ss_pred CEeCCceecccccccccccCCCCCccchHHHHHHHH---HHHHHHhc
Confidence 5899999999976543321 111123566778888 99998754
No 375
>PRK06370 mercuric reductase; Validated
Probab=23.31 E-value=1.6e+02 Score=30.83 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=30.8
Q ss_pred HHHHHHhc-CCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChh
Q 010972 168 WMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (496)
Q Consensus 168 L~~~l~~~-G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~ 219 (496)
+.+.+++. |+++++++.+. .++ .+ |+++|+++.+|+||+|+...
T Consensus 100 ~~~~~~~~~gv~v~~g~~~~---~~~--~~---v~v~~~~~~~d~lViATGs~ 144 (463)
T PRK06370 100 SEQWLRGLEGVDVFRGHARF---ESP--NT---VRVGGETLRAKRIFINTGAR 144 (463)
T ss_pred HHHHHhcCCCcEEEEEEEEE---ccC--CE---EEECcEEEEeCEEEEcCCCC
Confidence 34445666 89999998762 222 33 34467789999999999864
No 376
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=23.30 E-value=46 Score=36.17 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCCCCEEEcCCCccCCCCC-CCC-CCCCccccccCcChHHHHHHHHHHcC
Q 010972 362 TSFPNLFMAGDWITTRHGS-WRG-LMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 362 t~i~gL~lAGd~t~~~~G~-~~~-~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
+||+|||-||.-+....|. ..+ -.++-.|+.+|+ .|++.+.+...
T Consensus 525 ~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGr---iAG~~aa~~~~ 571 (584)
T PRK12835 525 SVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGY---VAARHAAAVVA 571 (584)
T ss_pred CCccceeeeeecccccccCCCCcCccchHHHHHHHH---HHHHHHHHhhh
Confidence 6899999999865542322 111 112456678888 99999887653
No 377
>PLN02546 glutathione reductase
Probab=23.21 E-value=1.6e+02 Score=31.75 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhh
Q 010972 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (496)
Q Consensus 166 ~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~ 220 (496)
+.+.+.++..|++++.+.. +.+. . .. |.++|+++.+|+||+|+....
T Consensus 182 ~~~~~~l~~~gV~~i~G~a-~~vd--~--~~---V~v~G~~~~~D~LVIATGs~p 228 (558)
T PLN02546 182 GIYKNILKNAGVTLIEGRG-KIVD--P--HT---VDVDGKLYTARNILIAVGGRP 228 (558)
T ss_pred HHHHHHHHhCCcEEEEeEE-EEcc--C--CE---EEECCEEEECCEEEEeCCCCC
Confidence 3344446667888887633 2332 2 22 345788899999999998643
No 378
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.05 E-value=1.2e+02 Score=30.38 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEcCChh
Q 010972 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (496)
Q Consensus 164 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~-~G~~~~Ad~VV~A~p~~ 219 (496)
+..+|.+..++-.++|...+++++++..+..|....|++ +|..+.++.||+++.+.
T Consensus 268 l~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 268 LAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred HHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 778888888888999999999999998432233456777 68899999999999874
No 379
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=22.78 E-value=25 Score=35.77 Aligned_cols=41 Identities=22% Similarity=0.523 Sum_probs=26.7
Q ss_pred CCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 363 SFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 363 ~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
.+|||||||.-+.- .| |.|-..+-.|-.||+ .|++.+.+.+
T Consensus 367 ~vPGLyf~GEvlDv-~g-~tGGYN~q~A~asG~---~Ag~~~~~~~ 407 (408)
T COG2081 367 KVPGLYFAGEVLDV-TG-WTGGYNFQWAWASGW---AAGQGAAAWL 407 (408)
T ss_pred cCCCcEEEEEEEEe-cc-CCCcHHHHHHHHHHH---HHHHhhhhhc
Confidence 58999999974442 22 222223566778888 8888877654
No 380
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=22.68 E-value=40 Score=35.32 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=29.4
Q ss_pred CCCCCCCEEEcCCCccCCCCCCCCCCCCccccccCcChHHHHHHHHHHcC
Q 010972 360 GFTSFPNLFMAGDWITTRHGSWRGLMSPDSKLPTGWSTILEMEAFLKLFQ 409 (496)
Q Consensus 360 ~~t~i~gL~lAGd~t~~~~G~~~~~~~megAv~SG~~~~~AA~~il~~lg 409 (496)
.+|.++|+|.+||-+.+ +.. ...|+..|. .||+.|.+.++
T Consensus 413 ~~Ts~~~VfA~GD~~~~-~~~------~~~A~~~G~---~aA~~I~~~l~ 452 (457)
T PRK11749 413 GRTSLPGVFAGGDIVTG-AAT------VVWAVGDGK---DAAEAIHEYLE 452 (457)
T ss_pred CccCCCCEEEeCCcCCC-chH------HHHHHHHHH---HHHHHHHHHHh
Confidence 34668999999997642 222 456778888 99999988773
No 381
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=22.61 E-value=54 Score=35.39 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=41.1
Q ss_pred hHHHHHHHHHh-cCCEEEcCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEcCChhh
Q 010972 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (496)
Q Consensus 164 l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~g~v~~V~~----~G~--~~~Ad~VV~A~p~~~ 220 (496)
+...|.+.+.+ .+.+|..+..|.++..+++ +.+.+|.. +|+ .+.+++||+|+....
T Consensus 140 ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 140 LLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 55667777655 5668999999999998764 33666654 244 568899999997765
No 382
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=22.19 E-value=77 Score=33.15 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCEEEcCceeeeEEecCCC-C--eEEEEEe-CCeEEecCEEEEcCChhhHHH
Q 010972 176 GCEFLDGRRVTDFIYDEER-C--CISDVVC-GKETYSAGAVVLAVGISTLQE 223 (496)
Q Consensus 176 G~~I~l~~~V~~I~~~~~~-g--~v~~V~~-~G~~~~Ad~VV~A~p~~~~~~ 223 (496)
..+|+-+ .|..|...+.+ | ++.||++ +|..+.|+.||+++..-.-..
T Consensus 139 nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL~~~ 189 (679)
T KOG2311|consen 139 NLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLRGQ 189 (679)
T ss_pred cchhhhh-hhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccceeeE
Confidence 3456544 45555554321 1 3777877 788999999999998755443
No 383
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=21.53 E-value=2.3e+02 Score=29.65 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=31.0
Q ss_pred HHHHHhcCCEEEcCceeeeEEec---CCCCeEEEEEe-CC--eEEecCEEEEcCChh
Q 010972 169 MDSMRTRGCEFLDGRRVTDFIYD---EERCCISDVVC-GK--ETYSAGAVVLAVGIS 219 (496)
Q Consensus 169 ~~~l~~~G~~I~l~~~V~~I~~~---~~~g~v~~V~~-~G--~~~~Ad~VV~A~p~~ 219 (496)
.+.+++.|+++..+. ++.|..+ ++.+.+. |.+ +| +++.+|+||+|+...
T Consensus 99 ~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~-v~~~~g~~~~~~~d~lViATGs~ 153 (472)
T PRK05976 99 AALLKKGKIDVFHGI-GRILGPSIFSPMPGTVS-VETETGENEMIIPENLLIATGSR 153 (472)
T ss_pred HHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEE-EEeCCCceEEEEcCEEEEeCCCC
Confidence 344566789999875 4445433 1112443 555 45 479999999999874
No 384
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=21.35 E-value=1.3e+02 Score=32.50 Aligned_cols=45 Identities=29% Similarity=0.243 Sum_probs=33.2
Q ss_pred CCCCCCEEEcCCCccC-CCCC-CCCCCCCccccccCcChHHHHHHHHHHc
Q 010972 361 FTSFPNLFMAGDWITT-RHGS-WRGLMSPDSKLPTGWSTILEMEAFLKLF 408 (496)
Q Consensus 361 ~t~i~gL~lAGd~t~~-~~G~-~~~~~~megAv~SG~~~~~AA~~il~~l 408 (496)
.+.++|||.||+.+.. .||+ -.+-.++-+++++|+ .|++...+.+
T Consensus 366 ~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~---~Ag~~aa~y~ 412 (562)
T COG1053 366 ETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGR---IAGEAAAEYA 412 (562)
T ss_pred ccCCCCeEECceecccccCCcccCCccccHHHHHHHH---HHHHHHHHHH
Confidence 3568999999998875 4576 344466888899998 7776666554
No 385
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=20.97 E-value=47 Score=35.73 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=26.2
Q ss_pred CCCCCEEEcCCCcc----CCCCC-CCCCCCCccccccCcChHHHHHHHHH
Q 010972 362 TSFPNLFMAGDWIT----TRHGS-WRGLMSPDSKLPTGWSTILEMEAFLK 406 (496)
Q Consensus 362 t~i~gL~lAGd~t~----~~~G~-~~~~~~megAv~SG~~~~~AA~~il~ 406 (496)
+||||||-||.-+. ..+|. ..+-.++-.|+.+|+ .|++.+.+
T Consensus 502 ~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~Gr---iAg~~aa~ 548 (549)
T PRK12834 502 TPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGR---AAGRAAAR 548 (549)
T ss_pred CEeCCeeeceecccccCCCcCCccccccchHHHHHHHHH---HHHHHHhh
Confidence 58999999999763 11221 000112455678888 88887754
No 386
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=20.74 E-value=47 Score=34.15 Aligned_cols=36 Identities=33% Similarity=0.491 Sum_probs=29.6
Q ss_pred ccccccchHHHHHHhhhhccceeeeehhhcccccccc
Q 010972 441 FSEPIIEYEDFLRQYQYTYQSSVFIATTLLNCCIDIK 477 (496)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (496)
|..+...|.|+.+-||..||-.|||.-+-++|+ .||
T Consensus 272 fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~-rir 307 (402)
T PF02487_consen 272 FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF-RIR 307 (402)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee-ehh
Confidence 555577899999999999999999998888764 443
No 387
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=20.64 E-value=2.3e+02 Score=25.01 Aligned_cols=81 Identities=19% Similarity=0.128 Sum_probs=44.4
Q ss_pred CCchhhhHHHHHHHHHhcCCEEEcCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEcCChhhH--HHhhccccccChHH
Q 010972 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL--QELIKNSILCNREE 235 (496)
Q Consensus 158 GG~~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~g~v~~V~~~G~~~~Ad~VV~A~p~~~~--~~Ll~~~~~~~~~~ 235 (496)
|..++ +++.++..|++.|.++- |.... .+. ..+ --.+|+||++.|...- .+-+.+- + ...
T Consensus 12 GqT~k-IA~~iA~~L~e~g~qvd-------i~dl~---~~~--~~~--l~~ydavVIgAsI~~~h~~~~~~~F-v--~k~ 73 (175)
T COG4635 12 GQTRK-IAEYIASHLRESGIQVD-------IQDLH---AVE--EPA--LEDYDAVVIGASIRYGHFHEAVQSF-V--KKH 73 (175)
T ss_pred CcHHH-HHHHHHHHhhhcCCeee-------eeehh---hhh--ccC--hhhCceEEEecchhhhhhHHHHHHH-H--HHH
Confidence 44555 88889988988887552 22111 111 011 1148999999998653 2322221 1 122
Q ss_pred HHHHhcCCCccEEEEEEEEccC
Q 010972 236 FLKVLNLASIDVVSVKLWFDKK 257 (496)
Q Consensus 236 ~~~l~~l~~~~~~~v~l~~~~~ 257 (496)
.+.|...+ ...++|.+.++.+
T Consensus 74 ~e~L~~kP-~A~f~vnl~a~k~ 94 (175)
T COG4635 74 AEALSTKP-SAFFSVNLTARKE 94 (175)
T ss_pred HHHHhcCC-ceEEEeehhhccc
Confidence 23444443 4567888877766
No 388
>PRK09891 cold shock gene; Provisional
Probab=20.04 E-value=35 Score=24.18 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=18.8
Q ss_pred Hhhhhccceeeeehhhcccccccc
Q 010972 454 QYQYTYQSSVFIATTLLNCCIDIK 477 (496)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~ 477 (496)
.|...|-..|--.+|||.||.-.+
T Consensus 45 aynisyltrvpgtntllacccllr 68 (76)
T PRK09891 45 AYNISYLTRVPGTNTLLACCCLLR 68 (76)
T ss_pred hhhhheeeecCCcccHHHHHHhcC
Confidence 477778888888899999996543
Done!