Query 010974
Match_columns 496
No_of_seqs 26 out of 28
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:40:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10698 phage shock protein P 95.1 1.1 2.5E-05 43.5 15.4 111 1-116 22-138 (222)
2 TIGR02977 phageshock_pspA phag 94.0 3.6 7.8E-05 39.6 16.1 110 1-115 22-137 (219)
3 PF04012 PspA_IM30: PspA/IM30 92.6 7.5 0.00016 36.8 15.5 110 1-115 21-136 (221)
4 COG2900 SlyX Uncharacterized p 92.0 0.75 1.6E-05 39.0 7.1 55 59-113 4-58 (72)
5 PF04102 SlyX: SlyX; InterPro 91.4 0.77 1.7E-05 37.4 6.5 52 60-111 1-52 (69)
6 PRK00846 hypothetical protein; 90.5 1.3 2.8E-05 37.7 7.2 56 58-113 8-63 (77)
7 PRK09039 hypothetical protein; 87.1 7.8 0.00017 40.1 11.6 80 31-114 113-199 (343)
8 PRK02793 phi X174 lysis protei 86.9 2.9 6.3E-05 34.6 6.9 53 61-113 6-58 (72)
9 PRK02119 hypothetical protein; 86.9 3 6.6E-05 34.7 7.0 52 60-111 6-57 (73)
10 PRK11637 AmiB activator; Provi 85.4 39 0.00084 35.4 15.7 38 74-111 216-253 (428)
11 PRK00295 hypothetical protein; 84.8 5.1 0.00011 32.9 7.2 51 61-111 3-53 (68)
12 PHA02562 46 endonuclease subun 84.4 40 0.00086 35.6 15.4 97 3-99 149-249 (562)
13 PF05377 FlaC_arch: Flagella a 83.8 2.7 5.8E-05 34.0 5.1 39 78-116 1-39 (55)
14 PRK04325 hypothetical protein; 83.2 6.3 0.00014 32.8 7.2 51 60-110 6-56 (74)
15 PF00261 Tropomyosin: Tropomyo 83.0 42 0.00092 32.7 13.9 45 5-50 92-136 (237)
16 COG1842 PspA Phage shock prote 82.8 53 0.0012 32.7 15.0 110 1-115 22-137 (225)
17 PRK10884 SH3 domain-containing 82.0 22 0.00047 34.8 11.5 80 23-113 89-168 (206)
18 PRK04406 hypothetical protein; 81.8 7.2 0.00016 32.7 7.1 51 60-110 8-58 (75)
19 PRK00106 hypothetical protein; 79.9 86 0.0019 35.0 16.4 112 6-118 25-159 (535)
20 PF00038 Filament: Intermediat 79.0 69 0.0015 31.6 16.8 111 6-117 170-288 (312)
21 PF08317 Spc7: Spc7 kinetochor 77.3 90 0.0019 31.9 15.4 51 64-114 217-267 (325)
22 PF00769 ERM: Ezrin/radixin/mo 75.8 59 0.0013 32.3 12.6 81 22-103 21-101 (246)
23 PRK12704 phosphodiesterase; Pr 75.5 1.1E+02 0.0024 33.8 15.6 40 79-118 105-144 (520)
24 PRK00736 hypothetical protein; 75.5 15 0.00033 30.1 7.1 49 61-109 3-51 (68)
25 PF04012 PspA_IM30: PspA/IM30 74.6 79 0.0017 30.0 16.0 105 6-111 38-146 (221)
26 PF08826 DMPK_coil: DMPK coile 73.6 35 0.00076 28.0 8.6 56 49-111 4-59 (61)
27 PF15290 Syntaphilin: Golgi-lo 72.6 15 0.00032 38.4 7.7 57 60-116 72-142 (305)
28 KOG2008 BTK-associated SH3-dom 72.5 65 0.0014 34.6 12.4 102 9-115 120-221 (426)
29 PF04859 DUF641: Plant protein 71.5 38 0.00082 31.5 9.4 30 8-37 22-57 (131)
30 TIGR03319 YmdA_YtgF conserved 71.3 1.6E+02 0.0034 32.5 15.5 26 148-173 196-221 (514)
31 KOG0728 26S proteasome regulat 71.2 11 0.00024 39.5 6.6 48 57-104 18-65 (404)
32 PHA03161 hypothetical protein; 71.1 32 0.0007 32.9 9.0 58 49-113 57-115 (150)
33 KOG0976 Rho/Rac1-interacting s 70.2 50 0.0011 39.2 11.8 91 24-114 34-150 (1265)
34 PF05701 WEMBL: Weak chloropla 69.5 1.8E+02 0.0038 32.0 15.4 90 7-100 139-234 (522)
35 KOG0161 Myosin class II heavy 69.1 45 0.00097 42.4 12.0 85 29-114 1036-1120(1930)
36 smart00787 Spc7 Spc7 kinetocho 69.1 1.5E+02 0.0032 30.8 15.7 51 63-113 211-261 (312)
37 PF14193 DUF4315: Domain of un 69.0 13 0.00028 32.1 5.5 50 63-112 8-62 (83)
38 PF09726 Macoilin: Transmembra 67.9 1.4E+02 0.0031 34.2 14.8 40 5-47 488-527 (697)
39 PRK00106 hypothetical protein; 66.8 2.2E+02 0.0048 31.9 15.9 27 147-173 216-242 (535)
40 PRK10803 tol-pal system protei 66.6 23 0.0005 35.3 7.5 54 63-116 40-93 (263)
41 TIGR03017 EpsF chain length de 65.6 1.7E+02 0.0037 30.2 15.0 22 92-113 255-276 (444)
42 PF10018 Med4: Vitamin-D-recep 65.4 48 0.001 31.4 9.1 61 50-111 3-63 (188)
43 TIGR01834 PHA_synth_III_E poly 65.1 48 0.001 34.9 9.7 83 11-102 230-314 (320)
44 PF10212 TTKRSYEDQ: Predicted 65.1 29 0.00064 38.6 8.5 64 51-114 422-485 (518)
45 PF11932 DUF3450: Protein of u 64.9 1.4E+02 0.0031 29.1 13.3 92 18-109 22-116 (251)
46 cd07651 F-BAR_PombeCdc15_like 64.8 1.4E+02 0.003 28.9 14.9 74 41-114 110-187 (236)
47 KOG2891 Surface glycoprotein [ 64.1 72 0.0016 33.9 10.7 79 22-101 347-431 (445)
48 TIGR02169 SMC_prok_A chromosom 63.0 2.8E+02 0.006 31.7 16.4 6 215-220 960-965 (1164)
49 TIGR02680 conserved hypothetic 62.6 2.3E+02 0.005 34.8 15.9 27 25-51 873-899 (1353)
50 PF06428 Sec2p: GDP/GTP exchan 62.0 5.5 0.00012 35.2 2.0 78 25-113 6-87 (100)
51 TIGR03007 pepcterm_ChnLen poly 61.8 79 0.0017 33.3 10.7 20 2-21 131-150 (498)
52 PF05278 PEARLI-4: Arabidopsis 61.2 62 0.0013 33.5 9.5 66 49-114 186-251 (269)
53 KOG0994 Extracellular matrix g 60.0 89 0.0019 38.6 11.5 36 78-113 1711-1746(1758)
54 TIGR01005 eps_transp_fam exopo 59.9 2.9E+02 0.0064 31.0 16.2 18 3-20 165-182 (754)
55 PF04102 SlyX: SlyX; InterPro 59.4 35 0.00076 27.8 6.1 40 76-115 3-42 (69)
56 PRK09039 hypothetical protein; 59.1 2.3E+02 0.005 29.6 13.6 15 95-109 169-183 (343)
57 TIGR01010 BexC_CtrB_KpsE polys 59.0 2.1E+02 0.0046 29.1 13.2 19 3-21 141-162 (362)
58 PF05615 THOC7: Tho complex su 58.6 1.3E+02 0.0028 26.9 10.1 30 80-109 84-113 (139)
59 PF04977 DivIC: Septum formati 58.5 45 0.00098 26.2 6.5 40 74-113 21-63 (80)
60 PF11559 ADIP: Afadin- and alp 58.5 1.4E+02 0.0031 26.9 12.9 55 63-117 80-134 (151)
61 KOG0161 Myosin class II heavy 58.4 2.2E+02 0.0047 36.7 15.0 35 35-70 1471-1505(1930)
62 PRK04406 hypothetical protein; 58.2 43 0.00094 28.2 6.6 41 74-114 8-48 (75)
63 TIGR02231 conserved hypothetic 58.1 1.5E+02 0.0032 32.0 12.2 36 77-112 138-173 (525)
64 PF13815 Dzip-like_N: Iguana/D 57.7 40 0.00087 29.8 6.6 34 79-112 82-115 (118)
65 COG3883 Uncharacterized protei 57.0 41 0.00088 34.6 7.4 58 58-115 33-90 (265)
66 TIGR03825 FliH_bacil flagellar 56.5 2.1E+02 0.0046 28.3 12.1 15 37-51 92-106 (255)
67 PF00170 bZIP_1: bZIP transcri 55.8 44 0.00095 26.3 6.0 38 75-112 24-61 (64)
68 TIGR02169 SMC_prok_A chromosom 55.6 3.7E+02 0.008 30.8 16.3 11 33-43 307-317 (1164)
69 PF09325 Vps5: Vps5 C terminal 55.4 90 0.0019 29.2 8.9 30 75-104 161-190 (236)
70 smart00338 BRLZ basic region l 55.1 43 0.00092 26.4 5.8 38 76-113 25-62 (65)
71 PF07106 TBPIP: Tat binding pr 54.9 57 0.0012 30.0 7.4 24 89-112 114-137 (169)
72 KOG2264 Exostosin EXT1L [Signa 54.8 74 0.0016 36.6 9.5 68 51-118 81-148 (907)
73 PRK11519 tyrosine kinase; Prov 54.8 3.4E+02 0.0074 30.8 14.7 22 2-23 237-258 (719)
74 PF10211 Ax_dynein_light: Axon 54.0 1.8E+02 0.0039 28.0 10.8 25 76-100 126-150 (189)
75 cd07596 BAR_SNX The Bin/Amphip 53.2 1.8E+02 0.0038 26.4 13.4 28 76-103 144-171 (218)
76 COG1196 Smc Chromosome segrega 53.1 4.8E+02 0.01 31.4 16.2 9 213-221 949-957 (1163)
77 PF08826 DMPK_coil: DMPK coile 52.7 33 0.00072 28.1 4.9 48 31-86 7-55 (61)
78 PF00261 Tropomyosin: Tropomyo 52.0 2.4E+02 0.0052 27.6 13.2 26 23-48 130-155 (237)
79 PRK00736 hypothetical protein; 51.1 48 0.001 27.3 5.6 37 77-113 5-41 (68)
80 PRK00295 hypothetical protein; 50.4 54 0.0012 27.0 5.8 37 77-113 5-41 (68)
81 PF10805 DUF2730: Protein of u 50.3 1.2E+02 0.0027 26.5 8.5 40 74-113 46-87 (106)
82 PRK02224 chromosome segregatio 50.1 4.3E+02 0.0094 30.0 15.7 20 28-47 531-550 (880)
83 PF09730 BicD: Microtubule-ass 49.9 2.4E+02 0.0052 32.9 12.7 57 60-116 402-458 (717)
84 PF10186 Atg14: UV radiation r 49.9 2.4E+02 0.0053 27.0 16.5 50 74-123 109-158 (302)
85 PF10475 DUF2450: Protein of u 48.9 67 0.0014 32.2 7.4 55 55-109 38-99 (291)
86 cd07647 F-BAR_PSTPIP The F-BAR 48.6 2.7E+02 0.0058 27.2 13.6 105 9-113 57-189 (239)
87 PRK09174 F0F1 ATP synthase sub 48.5 2.7E+02 0.0058 27.2 11.3 77 16-99 87-164 (204)
88 cd04766 HTH_HspR Helix-Turn-He 48.3 46 0.001 27.6 5.3 75 22-102 4-90 (91)
89 PF05911 DUF869: Plant protein 47.3 4.1E+02 0.0088 31.3 14.0 90 22-111 619-714 (769)
90 TIGR03319 YmdA_YtgF conserved 47.0 4.4E+02 0.0096 29.2 15.1 14 216-229 262-275 (514)
91 PRK04325 hypothetical protein; 46.9 59 0.0013 27.1 5.6 37 77-113 9-45 (74)
92 KOG2991 Splicing regulator [RN 46.5 1.2E+02 0.0025 32.0 8.7 41 78-118 265-305 (330)
93 PF06005 DUF904: Protein of un 46.4 60 0.0013 27.2 5.6 36 79-114 6-55 (72)
94 PF05911 DUF869: Plant protein 46.4 1.4E+02 0.003 34.9 10.2 52 50-101 57-109 (769)
95 KOG0994 Extracellular matrix g 46.3 24 0.00051 43.1 4.3 78 7-90 1290-1367(1758)
96 COG1196 Smc Chromosome segrega 45.9 6.1E+02 0.013 30.5 16.1 38 76-113 445-482 (1163)
97 PF08172 CASP_C: CASP C termin 45.6 38 0.00083 34.0 5.2 39 76-114 92-134 (248)
98 PF13815 Dzip-like_N: Iguana/D 45.5 1.8E+02 0.0039 25.7 8.8 52 50-101 67-118 (118)
99 COG4942 Membrane-bound metallo 45.1 4.6E+02 0.01 28.9 13.5 46 70-115 217-262 (420)
100 COG4942 Membrane-bound metallo 44.8 77 0.0017 34.6 7.5 58 56-114 39-96 (420)
101 PF07321 YscO: Type III secret 44.4 1E+02 0.0022 29.1 7.4 50 51-103 2-51 (152)
102 TIGR02680 conserved hypothetic 43.8 3.7E+02 0.0079 33.1 13.6 31 77-107 935-965 (1353)
103 PF02996 Prefoldin: Prefoldin 43.7 49 0.0011 28.2 4.9 36 76-111 83-118 (120)
104 PF11180 DUF2968: Protein of u 43.4 3.5E+02 0.0076 27.0 11.2 42 18-59 109-151 (192)
105 PRK11637 AmiB activator; Provi 43.4 4.2E+02 0.0091 27.9 14.5 75 40-114 168-242 (428)
106 PF06632 XRCC4: DNA double-str 43.2 4E+02 0.0087 28.3 12.3 59 35-94 145-211 (342)
107 cd08915 V_Alix_like Protein-in 43.2 3.7E+02 0.008 27.4 11.7 70 46-115 74-150 (342)
108 PRK04654 sec-independent trans 43.1 1.7E+02 0.0037 29.6 9.0 57 53-114 35-91 (214)
109 PRK14011 prefoldin subunit alp 42.9 49 0.0011 30.9 5.1 36 75-110 93-128 (144)
110 TIGR00606 rad50 rad50. This fa 42.6 6E+02 0.013 31.0 15.0 33 77-109 312-344 (1311)
111 cd07667 BAR_SNX30 The Bin/Amph 42.0 2.2E+02 0.0048 28.9 9.8 53 49-101 146-198 (240)
112 PRK14154 heat shock protein Gr 42.0 56 0.0012 32.5 5.5 39 78-116 53-91 (208)
113 PF04576 Zein-binding: Zein-bi 41.9 1.9E+02 0.0041 25.9 8.2 60 44-107 30-93 (94)
114 PRK02793 phi X174 lysis protei 41.8 92 0.002 25.9 6.0 38 76-113 7-44 (72)
115 PRK02119 hypothetical protein; 41.8 82 0.0018 26.3 5.7 37 77-113 9-45 (73)
116 PF12709 Kinetocho_Slk19: Cent 41.7 2.5E+02 0.0054 24.8 11.0 74 20-109 8-81 (87)
117 PRK00409 recombination and DNA 41.1 5.7E+02 0.012 29.8 14.0 29 80-108 566-594 (782)
118 TIGR02231 conserved hypothetic 41.1 3E+02 0.0066 29.7 11.3 33 82-114 136-168 (525)
119 PF05615 THOC7: Tho complex su 40.8 2.7E+02 0.0058 24.9 11.5 65 50-114 47-111 (139)
120 PF06476 DUF1090: Protein of u 40.4 2.3E+02 0.005 25.6 8.7 47 4-50 42-93 (115)
121 PF15136 UPF0449: Uncharacteri 40.4 68 0.0015 28.7 5.3 38 73-110 56-93 (97)
122 PRK00846 hypothetical protein; 40.3 72 0.0016 27.4 5.2 38 76-113 12-49 (77)
123 PRK14162 heat shock protein Gr 40.2 66 0.0014 31.5 5.7 40 77-116 39-78 (194)
124 TIGR01843 type_I_hlyD type I s 40.1 4E+02 0.0087 26.8 14.8 7 79-85 212-218 (423)
125 COG4026 Uncharacterized protei 39.6 1.1E+02 0.0023 31.7 7.2 35 76-110 155-189 (290)
126 PRK14140 heat shock protein Gr 39.5 57 0.0012 31.9 5.1 39 78-116 38-76 (191)
127 PF10146 zf-C4H2: Zinc finger- 39.2 4.1E+02 0.009 26.7 13.1 89 24-113 5-103 (230)
128 PF05529 Bap31: B-cell recepto 38.8 1.7E+02 0.0036 27.5 8.0 30 85-114 155-184 (192)
129 PRK02224 chromosome segregatio 38.8 5.2E+02 0.011 29.4 13.1 12 92-103 573-584 (880)
130 COG3599 DivIVA Cell division i 38.0 3.7E+02 0.0081 26.8 10.5 100 15-118 101-202 (212)
131 PF05667 DUF812: Protein of un 38.0 6.1E+02 0.013 28.9 13.3 15 208-222 486-500 (594)
132 PF11570 E2R135: Coiled-coil r 37.4 3.3E+02 0.0072 25.9 9.5 44 75-118 82-125 (136)
133 COG2900 SlyX Uncharacterized p 36.9 1E+02 0.0023 26.4 5.6 39 76-114 7-45 (72)
134 KOG0612 Rho-associated, coiled 36.8 4E+02 0.0087 33.2 12.2 93 4-101 646-738 (1317)
135 PF08614 ATG16: Autophagy prot 36.5 88 0.0019 29.6 5.8 43 68-110 107-149 (194)
136 PRK14160 heat shock protein Gr 36.0 1E+02 0.0022 30.7 6.3 44 75-118 59-102 (211)
137 PRK00888 ftsB cell division pr 35.8 69 0.0015 28.3 4.6 34 72-105 29-62 (105)
138 TIGR01062 parC_Gneg DNA topois 35.7 4.3E+02 0.0094 30.8 12.0 97 5-118 370-472 (735)
139 TIGR01000 bacteriocin_acc bact 35.7 5.6E+02 0.012 27.2 12.9 26 88-113 288-313 (457)
140 PF05852 DUF848: Gammaherpesvi 35.3 3.7E+02 0.008 25.7 9.5 52 54-112 63-114 (146)
141 cd00890 Prefoldin Prefoldin is 35.2 87 0.0019 26.8 5.1 35 76-110 93-127 (129)
142 PRK12704 phosphodiesterase; Pr 35.0 6.7E+02 0.015 27.9 16.2 26 148-173 202-227 (520)
143 PF10234 Cluap1: Clusterin-ass 34.8 5.4E+02 0.012 26.7 11.6 40 76-115 175-214 (267)
144 PF13094 CENP-Q: CENP-Q, a CEN 34.3 1E+02 0.0022 28.2 5.7 32 80-111 30-61 (160)
145 PF12128 DUF3584: Protein of u 34.2 8E+02 0.017 29.8 14.2 93 23-115 245-337 (1201)
146 PRK10884 SH3 domain-containing 34.2 1.9E+02 0.0042 28.4 7.9 38 77-114 118-155 (206)
147 KOG0977 Nuclear envelope prote 33.9 6.7E+02 0.014 28.6 12.7 37 75-111 160-196 (546)
148 PF04977 DivIC: Septum formati 33.9 95 0.0021 24.4 4.8 40 74-113 14-53 (80)
149 PF02601 Exonuc_VII_L: Exonucl 33.8 5E+02 0.011 26.0 13.1 25 13-37 136-160 (319)
150 PF13600 DUF4140: N-terminal d 33.6 88 0.0019 26.4 4.8 34 76-109 69-102 (104)
151 PF05701 WEMBL: Weak chloropla 33.5 6.9E+02 0.015 27.5 14.8 28 87-114 305-332 (522)
152 PRK05561 DNA topoisomerase IV 33.5 5.2E+02 0.011 30.0 12.2 64 46-109 419-483 (742)
153 TIGR01843 type_I_hlyD type I s 33.2 5.2E+02 0.011 26.0 16.0 23 79-101 205-227 (423)
154 KOG4673 Transcription factor T 32.6 5E+02 0.011 30.9 11.6 97 7-103 388-507 (961)
155 PF01025 GrpE: GrpE; InterPro 32.4 24 0.00053 31.8 1.3 37 78-114 12-48 (165)
156 cd00584 Prefoldin_alpha Prefol 32.3 1E+02 0.0022 26.9 5.1 44 64-110 84-127 (129)
157 PRK14158 heat shock protein Gr 32.3 1.1E+02 0.0023 30.1 5.7 41 77-117 40-80 (194)
158 TIGR03185 DNA_S_dndD DNA sulfu 32.1 4.3E+02 0.0094 29.5 11.0 30 78-107 436-465 (650)
159 TIGR03185 DNA_S_dndD DNA sulfu 32.1 3.2E+02 0.0069 30.5 10.0 23 96-118 267-289 (650)
160 PF01576 Myosin_tail_1: Myosin 32.0 15 0.00033 42.3 0.0 48 21-69 596-643 (859)
161 PRK10476 multidrug resistance 32.0 5.5E+02 0.012 25.9 14.5 16 97-112 189-204 (346)
162 TIGR02971 heterocyst_DevB ABC 31.9 3.3E+02 0.0071 27.0 9.2 35 77-111 90-124 (327)
163 PRK13182 racA polar chromosome 31.8 1.7E+02 0.0037 28.1 6.9 25 71-95 119-143 (175)
164 PRK14150 heat shock protein Gr 31.8 1.1E+02 0.0023 29.8 5.7 39 76-117 40-78 (193)
165 PF14915 CCDC144C: CCDC144C pr 31.8 6.6E+02 0.014 26.8 11.7 84 30-113 154-243 (305)
166 PF12718 Tropomyosin_1: Tropom 31.8 4.2E+02 0.0091 24.5 13.9 95 12-110 6-113 (143)
167 PF07106 TBPIP: Tat binding pr 31.6 62 0.0013 29.8 3.8 26 79-104 81-106 (169)
168 KOG0977 Nuclear envelope prote 31.5 5.7E+02 0.012 29.1 11.7 78 34-115 106-186 (546)
169 KOG0804 Cytoplasmic Zn-finger 31.3 8.1E+02 0.018 27.7 13.4 71 42-112 348-424 (493)
170 COG2178 Predicted RNA-binding 31.2 2.7E+02 0.0059 28.0 8.3 66 37-108 9-74 (204)
171 PF14257 DUF4349: Domain of un 31.1 1.4E+02 0.003 29.2 6.4 52 64-115 133-186 (262)
172 PRK14143 heat shock protein Gr 30.6 1.1E+02 0.0024 30.8 5.7 42 77-118 67-108 (238)
173 TIGR01010 BexC_CtrB_KpsE polys 30.6 6E+02 0.013 25.9 12.5 97 18-114 175-294 (362)
174 PRK13729 conjugal transfer pil 30.1 1.3E+02 0.0029 33.4 6.6 30 82-111 95-124 (475)
175 PF09969 DUF2203: Uncharacteri 30.0 2.8E+02 0.006 25.2 7.6 56 46-109 4-61 (120)
176 PF07716 bZIP_2: Basic region 29.9 1.4E+02 0.003 23.0 5.0 30 76-105 24-53 (54)
177 PRK14139 heat shock protein Gr 29.9 1.2E+02 0.0025 29.7 5.5 23 78-100 40-62 (185)
178 TIGR02499 HrpE_YscL_not type I 29.8 3.5E+02 0.0076 24.1 8.2 44 15-58 15-64 (166)
179 PRK03947 prefoldin subunit alp 29.7 1.4E+02 0.003 26.6 5.7 37 76-112 100-136 (140)
180 KOG4360 Uncharacterized coiled 29.6 4.2E+02 0.009 30.3 10.2 37 78-114 269-305 (596)
181 PRK04778 septation ring format 29.6 4.4E+02 0.0095 29.1 10.4 37 78-114 391-427 (569)
182 COG3937 Uncharacterized conser 29.6 1.7E+02 0.0037 26.9 6.1 39 46-87 40-78 (108)
183 PF03528 Rabaptin: Rabaptin; 29.6 61 0.0013 29.3 3.3 80 12-111 1-85 (106)
184 PTZ00454 26S protease regulato 29.3 1.7E+02 0.0036 31.1 7.0 38 76-113 28-65 (398)
185 COG1729 Uncharacterized protei 29.3 69 0.0015 32.9 4.1 50 67-117 46-95 (262)
186 PF12718 Tropomyosin_1: Tropom 29.3 3E+02 0.0064 25.5 7.8 21 24-44 11-31 (143)
187 TIGR00293 prefoldin, archaeal 29.2 1E+02 0.0022 26.8 4.7 35 75-109 91-125 (126)
188 PF03114 BAR: BAR domain; Int 29.2 3.8E+02 0.0082 24.0 8.3 61 53-115 4-64 (229)
189 PF15456 Uds1: Up-regulated Du 29.1 2.6E+02 0.0056 25.7 7.3 82 6-100 23-111 (124)
190 KOG2398 Predicted proline-seri 29.1 9.3E+02 0.02 27.7 13.5 30 85-114 140-169 (611)
191 PF15619 Lebercilin: Ciliary p 28.8 5.6E+02 0.012 25.0 11.9 85 27-115 82-188 (194)
192 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.7 4.3E+02 0.0094 23.7 11.7 38 76-113 58-95 (132)
193 PF14817 HAUS5: HAUS augmin-li 28.6 9.3E+02 0.02 27.8 12.9 46 64-109 383-428 (632)
194 KOG2668 Flotillins [Intracellu 28.5 6E+02 0.013 28.0 10.8 90 1-90 209-330 (428)
195 PRK14148 heat shock protein Gr 28.3 1.4E+02 0.003 29.3 5.8 37 79-115 42-78 (195)
196 PF03194 LUC7: LUC7 N_terminus 28.2 6.4E+02 0.014 25.5 10.5 77 12-90 82-159 (254)
197 KOG3684 Ca2+-activated K+ chan 28.2 6.1E+02 0.013 28.6 11.0 89 18-109 358-448 (489)
198 PHA02562 46 endonuclease subun 28.1 7.6E+02 0.016 26.3 15.3 7 34-40 269-275 (562)
199 PF05266 DUF724: Protein of un 28.1 5.7E+02 0.012 24.9 11.2 19 93-111 161-179 (190)
200 PRK14155 heat shock protein Gr 27.7 1E+02 0.0023 30.4 4.9 23 78-100 21-43 (208)
201 PF04728 LPP: Lipoprotein leuc 27.7 1.8E+02 0.0038 23.9 5.3 30 78-107 4-33 (56)
202 PRK15422 septal ring assembly 27.6 1E+02 0.0022 26.9 4.2 25 80-104 7-31 (79)
203 cd07653 F-BAR_CIP4-like The F- 27.4 5.6E+02 0.012 24.6 13.1 28 9-36 62-89 (251)
204 PRK13729 conjugal transfer pil 27.3 2E+02 0.0043 32.1 7.3 39 76-114 75-120 (475)
205 TIGR02894 DNA_bind_RsfA transc 27.2 4.9E+02 0.011 25.4 9.0 13 48-60 83-95 (161)
206 KOG0243 Kinesin-like protein [ 27.2 4.6E+02 0.01 32.0 10.6 32 76-107 482-513 (1041)
207 PRK09841 cryptic autophosphory 27.1 8.3E+02 0.018 27.8 12.3 12 412-423 641-652 (726)
208 cd00187 TOP4c DNA Topoisomeras 26.9 7.4E+02 0.016 27.2 11.4 13 6-18 349-361 (445)
209 PRK10559 p-hydroxybenzoic acid 26.9 3.3E+02 0.0071 27.5 8.3 22 92-113 130-151 (310)
210 PRK09841 cryptic autophosphory 26.8 9.9E+02 0.021 27.3 15.4 17 3-19 238-254 (726)
211 PF04849 HAP1_N: HAP1 N-termin 26.8 7E+02 0.015 26.5 10.8 74 31-105 210-283 (306)
212 PRK10698 phage shock protein P 26.8 6.2E+02 0.013 24.9 15.8 106 7-113 40-149 (222)
213 PRK03918 chromosome segregatio 26.7 9.8E+02 0.021 27.1 12.9 34 82-115 250-283 (880)
214 KOG0993 Rab5 GTPase effector R 26.5 9.7E+02 0.021 27.0 12.8 147 11-158 57-251 (542)
215 PRK14145 heat shock protein Gr 26.3 1.3E+02 0.0029 29.6 5.3 36 79-114 47-82 (196)
216 PF08614 ATG16: Autophagy prot 26.2 1.4E+02 0.0029 28.4 5.2 49 64-112 117-165 (194)
217 PF12761 End3: Actin cytoskele 26.2 6.7E+02 0.014 25.1 10.2 27 84-110 167-193 (195)
218 TIGR01933 hflK HflK protein. H 26.1 6.1E+02 0.013 24.6 9.8 45 22-69 151-195 (261)
219 TIGR01069 mutS2 MutS2 family p 26.1 1.1E+03 0.024 27.5 13.3 32 78-109 559-590 (771)
220 KOG0250 DNA repair protein RAD 26.1 1.3E+03 0.029 28.5 15.1 29 212-240 478-508 (1074)
221 PTZ00121 MAEBL; Provisional 25.8 9.7E+02 0.021 31.1 12.9 103 1-110 1184-1286(2084)
222 PF08537 NBP1: Fungal Nap bind 25.7 1.3E+02 0.0029 31.9 5.4 35 72-106 177-211 (323)
223 TIGR02338 gimC_beta prefoldin, 25.6 2.2E+02 0.0049 24.7 6.0 33 77-109 74-106 (110)
224 TIGR01069 mutS2 MutS2 family p 25.6 8.2E+02 0.018 28.5 12.0 9 89-97 581-589 (771)
225 PRK14163 heat shock protein Gr 25.5 1.3E+02 0.0028 30.1 5.1 35 81-115 44-78 (214)
226 COG1579 Zn-ribbon protein, pos 25.4 7.2E+02 0.016 25.4 10.3 9 187-195 200-208 (239)
227 PF09712 PHA_synth_III_E: Poly 25.3 3.7E+02 0.008 27.6 8.4 74 16-97 218-292 (293)
228 KOG0933 Structural maintenance 25.3 1.4E+03 0.03 28.5 14.1 110 1-112 156-279 (1174)
229 TIGR00998 8a0101 efflux pump m 25.2 3.4E+02 0.0074 26.7 8.0 24 79-102 110-133 (334)
230 COG2433 Uncharacterized conser 24.4 2.2E+02 0.0048 32.8 7.2 88 13-108 380-467 (652)
231 PRK14147 heat shock protein Gr 24.4 1.6E+02 0.0035 28.2 5.3 24 77-100 25-48 (172)
232 TIGR01242 26Sp45 26S proteasom 24.4 1.4E+02 0.003 30.4 5.3 37 77-113 6-42 (364)
233 PF12777 MT: Microtubule-bindi 24.3 1.7E+02 0.0037 30.2 5.9 53 61-113 219-271 (344)
234 PF06729 CENP-R: Kinetochore c 24.1 3.8E+02 0.0082 25.7 7.5 69 45-115 55-126 (139)
235 PRK14151 heat shock protein Gr 24.0 1.5E+02 0.0031 28.6 5.0 24 77-100 27-50 (176)
236 cd00632 Prefoldin_beta Prefold 23.9 1.7E+02 0.0037 25.1 5.0 32 79-110 72-103 (105)
237 PRK14144 heat shock protein Gr 23.7 1.5E+02 0.0033 29.3 5.1 38 78-115 46-83 (199)
238 PRK14146 heat shock protein Gr 23.6 1.6E+02 0.0036 29.2 5.4 37 79-115 56-92 (215)
239 PRK14153 heat shock protein Gr 23.3 1.5E+02 0.0032 29.2 5.0 39 77-115 33-71 (194)
240 PRK10476 multidrug resistance 23.3 3.7E+02 0.008 27.1 7.9 8 228-235 214-221 (346)
241 PF01920 Prefoldin_2: Prefoldi 23.1 2.3E+02 0.005 23.3 5.5 37 79-115 64-100 (106)
242 PHA02047 phage lambda Rz1-like 23.0 2.9E+02 0.0063 25.2 6.2 46 74-119 31-76 (101)
243 cd07599 BAR_Rvs167p The Bin/Am 22.9 5.5E+02 0.012 24.5 8.6 47 72-118 144-190 (216)
244 PF07111 HCR: Alpha helical co 22.8 7.3E+02 0.016 29.3 10.8 79 36-118 498-576 (739)
245 KOG3335 Predicted coiled-coil 22.8 1.2E+02 0.0025 30.0 4.1 48 64-112 94-141 (181)
246 PF15035 Rootletin: Ciliary ro 22.7 3.7E+02 0.0079 26.1 7.4 48 68-115 65-119 (182)
247 PRK14141 heat shock protein Gr 22.7 1.4E+02 0.003 29.8 4.6 58 61-118 22-83 (209)
248 PF14131 DUF4298: Domain of un 22.6 2E+02 0.0044 24.6 5.1 33 78-110 1-33 (90)
249 PF11336 DUF3138: Protein of u 22.6 80 0.0017 35.1 3.3 28 75-102 23-50 (514)
250 KOG4593 Mitotic checkpoint pro 22.6 1.3E+03 0.029 27.3 14.7 60 54-114 239-298 (716)
251 PF04849 HAP1_N: HAP1 N-termin 22.6 8.5E+02 0.019 25.9 10.5 34 80-113 272-305 (306)
252 PRK11281 hypothetical protein; 22.5 1.2E+03 0.025 28.8 12.8 100 9-113 60-164 (1113)
253 COG0576 GrpE Molecular chapero 22.3 1.9E+02 0.004 28.1 5.4 43 72-114 38-84 (193)
254 PF14197 Cep57_CLD_2: Centroso 22.2 4.6E+02 0.01 21.8 7.2 33 79-111 35-67 (69)
255 PF10498 IFT57: Intra-flagella 22.1 9.8E+02 0.021 25.6 11.3 42 72-113 275-316 (359)
256 PF05667 DUF812: Protein of un 22.1 2.9E+02 0.0062 31.4 7.5 40 76-115 334-373 (594)
257 PF02050 FliJ: Flagellar FliJ 22.1 4.3E+02 0.0092 21.3 12.4 32 78-109 60-91 (123)
258 PRK12705 hypothetical protein; 21.7 1.2E+03 0.025 26.3 13.6 26 148-173 190-215 (508)
259 PF01923 Cob_adeno_trans: Coba 21.7 1.7E+02 0.0036 27.2 4.8 42 77-118 30-73 (163)
260 PF11221 Med21: Subunit 21 of 21.4 2.4E+02 0.0052 25.8 5.7 37 74-113 101-137 (144)
261 PF12329 TMF_DNA_bd: TATA elem 21.2 3.6E+02 0.0077 22.5 6.1 42 72-113 28-69 (74)
262 TIGR01061 parC_Gpos DNA topois 21.2 1.3E+03 0.027 27.0 12.4 42 77-118 434-475 (738)
263 PRK06569 F0F1 ATP synthase sub 21.1 6.1E+02 0.013 24.3 8.4 8 38-45 45-52 (155)
264 PF15358 TSKS: Testis-specific 21.1 4.8E+02 0.01 29.3 8.6 73 36-109 304-379 (558)
265 KOG0963 Transcription factor/C 21.1 1.4E+03 0.029 26.8 14.1 103 8-114 230-340 (629)
266 PF01025 GrpE: GrpE; InterPro 21.1 2.2E+02 0.0047 25.8 5.3 37 76-112 17-53 (165)
267 PF12072 DUF3552: Domain of un 20.9 7.5E+02 0.016 23.7 16.7 69 12-84 22-92 (201)
268 TIGR00606 rad50 rad50. This fa 20.7 1.6E+03 0.035 27.5 13.6 20 93-112 473-492 (1311)
269 PRK13979 DNA topoisomerase IV 20.7 7.3E+02 0.016 29.9 10.6 43 77-119 453-495 (957)
270 PRK00888 ftsB cell division pr 20.6 2.1E+02 0.0045 25.3 4.9 37 77-113 27-63 (105)
271 smart00338 BRLZ basic region l 20.4 2.2E+02 0.0047 22.4 4.5 31 77-107 33-63 (65)
272 PF13514 AAA_27: AAA domain 20.3 8.7E+02 0.019 29.0 11.2 88 28-115 297-384 (1111)
273 PRK09343 prefoldin subunit bet 20.2 3.2E+02 0.007 24.5 6.1 31 79-109 80-110 (121)
274 PRK11281 hypothetical protein; 20.1 5.6E+02 0.012 31.4 9.6 89 24-113 84-178 (1113)
275 PRK11166 chemotaxis regulator 20.1 6E+02 0.013 25.6 8.5 57 17-76 57-113 (214)
276 KOG4552 Vitamin-D-receptor int 20.1 9.8E+02 0.021 24.8 12.4 94 15-111 17-122 (272)
No 1
>PRK10698 phage shock protein PspA; Provisional
Probab=95.06 E-value=1.1 Score=43.53 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=65.7
Q ss_pred CCchHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHH-HHHHHHHHHHhhhhhHHHHHHHHHHH
Q 010974 1 MSDSEKLM-----ALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKE-DALRMLLRLKQMLDAKVNEAQVVSLC 74 (496)
Q Consensus 1 MadSekl~-----ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Ke-eal~~LlRLK~~~daki~EaE~~sl~ 74 (496)
|+||+|+. -|..++.+ ++.+.|++|+.+++..+-..++...-+ =-=++.+-|.+-=+.--.+|=..-..
T Consensus 22 aEDP~k~l~q~i~em~~~l~~-----~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~ 96 (222)
T PRK10698 22 AEDPQKLVRLMIQEMEDTLVE-----VRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQK 96 (222)
T ss_pred hcCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57888752 23333333 488999999887765433222211110 01122223333222222232223333
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
...+|..|++|+...+..+..|+..|++++..|++++..+..
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999999999999999888887754
No 2
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.04 E-value=3.6 Score=39.56 Aligned_cols=110 Identities=20% Similarity=0.286 Sum_probs=70.9
Q ss_pred CCchHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhhHHHH----HHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 010974 1 MSDSEKLMALKKAYADI--ILNTAKEAAARIMVSERKTIR----YQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLC 74 (496)
Q Consensus 1 MadSekl~ALkkAyadi--ilntaKEaAaRvm~aErka~~----~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~ 74 (496)
++||+++ |...+-|| -|..++.+-|++|+.+++..+ ++....--.+. +.+-|++-=|.-..+|=..-..
T Consensus 22 ~EDP~~~--l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~---A~~Al~~G~EdLAr~Al~~k~~ 96 (219)
T TIGR02977 22 AEDPEKM--IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK---AELALSKGREDLARAALIEKQK 96 (219)
T ss_pred ccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHH
Confidence 4688864 44444333 356788899999988654332 22222222222 2333444444444444445555
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
.+..+..|+.|+..++..|..|+..|++.+..|+.++....
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888999999999999999999999999988887764
No 3
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.60 E-value=7.5 Score=36.76 Aligned_cols=110 Identities=29% Similarity=0.357 Sum_probs=57.0
Q ss_pred CCchHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHH----HHHHHhhhhhHHHHHHHHHHH
Q 010974 1 MSDSEKLMALKKAYADI--ILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRM----LLRLKQMLDAKVNEAQVVSLC 74 (496)
Q Consensus 1 MadSekl~ALkkAyadi--ilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~----LlRLK~~~daki~EaE~~sl~ 74 (496)
|+||++ -|..++-|+ -+.-++.+.++||+..++.. +++..+..++-.. .+-|++-=|.--.+|=..-..
T Consensus 21 ~EDP~~--~l~q~ird~e~~l~~a~~~~a~~~a~~~~le---~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~ 95 (221)
T PF04012_consen 21 AEDPEK--MLEQAIRDMEEQLRKARQALARVMANQKRLE---RKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKAD 95 (221)
T ss_pred hcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467874 455555444 34556778888877655432 2222222222211 111222222223333333334
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
....+..|+.++..+...|..|+..|+.....|+.++....
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666554
No 4
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.96 E-value=0.75 Score=38.96 Aligned_cols=55 Identities=25% Similarity=0.381 Sum_probs=49.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 59 QMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 59 ~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
..++++|+|.|++..-|-+-|+||-.+|-|-+-+|..+|+-||.+-..|..++..
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4678999999999999999999999999999999999999999998888776554
No 5
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.35 E-value=0.77 Score=37.38 Aligned_cols=52 Identities=23% Similarity=0.400 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
||+.+|.+.|+...-+..-|++|-..+-.-+..|..|+..|+.+...|..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999888888888888888888888887765
No 6
>PRK00846 hypothetical protein; Provisional
Probab=90.52 E-value=1.3 Score=37.73 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=51.3
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 58 KQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 58 K~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.+.|+++|.+-|+...-|..-|++|-..+...+..|..|+..|+++.+.|+.+...
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 47789999999999999999999999999999999999999999999999887744
No 7
>PRK09039 hypothetical protein; Validated
Probab=87.07 E-value=7.8 Score=40.06 Aligned_cols=80 Identities=25% Similarity=0.203 Sum_probs=45.9
Q ss_pred HHhhHHHHHHHHHHHhHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHH----
Q 010974 31 VSERKTIRYQQELFAAKE---DALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREA---- 103 (496)
Q Consensus 31 ~aErka~~~~qel~~~Ke---eal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~---- 103 (496)
..|.++..++.+|...|. |+.+.+.+|++-+++= +-+.-.=+.-|+++|++..+++..|.+|+.+|+.+
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aL----r~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~ 188 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAAL----RRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQR 188 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888775 5677788887755441 11122223345555555555555555555555555
Q ss_pred HHHHHHHHHhh
Q 010974 104 QDELERATYNE 114 (496)
Q Consensus 104 ~~eLEk~r~~q 114 (496)
-.+|+..++.-
T Consensus 189 ~~~l~~~~~~~ 199 (343)
T PRK09039 189 VQELNRYRSEF 199 (343)
T ss_pred HHHHHHhHHHH
Confidence 23455555544
No 8
>PRK02793 phi X174 lysis protein; Provisional
Probab=86.94 E-value=2.9 Score=34.63 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 61 LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 61 ~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
|+++|.+-|+...-|..-|++|-..+-+-+..|..|+.+|+++...|..++.+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77899999999999999999999988888888888888888888888775543
No 9
>PRK02119 hypothetical protein; Provisional
Probab=86.88 E-value=3 Score=34.66 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
.|+.+|.+-|+...-|..-|++|-..+-+-+..|..|+.+|+++...|..+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4788999999999999999999999888888888888888888888776654
No 10
>PRK11637 AmiB activator; Provisional
Probab=85.42 E-value=39 Score=35.40 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=20.8
Q ss_pred HHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 74 CQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 74 ~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
.++..++.|+.++.+.+..+..|+.+.++....|+++.
T Consensus 216 e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 216 ERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555556555555555555443
No 11
>PRK00295 hypothetical protein; Provisional
Probab=84.76 E-value=5.1 Score=32.88 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 61 LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 61 ~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
|+++|.+-|+...-|..-|++|-..+-.-+..|..|+..|+++...|..+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788888888888888888888777777777777777777777666543
No 12
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.36 E-value=40 Score=35.63 Aligned_cols=97 Identities=8% Similarity=0.063 Sum_probs=52.3
Q ss_pred chHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 010974 3 DSEKLMALKKAY-ADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDAL---RMLLRLKQMLDAKVNEAQVVSLCQQRK 78 (496)
Q Consensus 3 dSekl~ALkkAy-adiilntaKEaAaRvm~aErka~~~~qel~~~Keeal---~~LlRLK~~~daki~EaE~~sl~~qrk 78 (496)
++++...|.+.. -++.-.+.+.+-.++-..+.+...++.++....++.= .++.+++...+..+.+.+..--.-.++
T Consensus 149 ~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~ 228 (562)
T PHA02562 149 APARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEE 228 (562)
T ss_pred hHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 2344455666666666777777777777666555433 455566655555544444444444445
Q ss_pred hHHHHHHhhhhHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRAD 99 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~E 99 (496)
...|++|+...++-+.+|+.+
T Consensus 229 ~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 229 AKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 555555555555555555443
No 13
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=83.83 E-value=2.7 Score=34.03 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=35.5
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
||+|||..|.-.+-.|..+|.|+...+..+|++-.+-..
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998877543
No 14
>PRK04325 hypothetical protein; Provisional
Probab=83.18 E-value=6.3 Score=32.83 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
.|..+|.+-|+...-|..-|++|-..+-+-+..|..|+..|+.+...|..+
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788888888888888888888877777777777777777777666554
No 15
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=83.02 E-value=42 Score=32.68 Aligned_cols=45 Identities=31% Similarity=0.313 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 010974 5 EKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDA 50 (496)
Q Consensus 5 ekl~ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keea 50 (496)
+++..|.....++ -..+.+|-.|.--++||-..++++|..+.+-|
T Consensus 92 eri~~lE~~l~ea-~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~ 136 (237)
T PF00261_consen 92 ERIEELEQQLKEA-KRRAEEAERKYEEVERKLKVLEQELERAEERA 136 (237)
T ss_dssp HHHHHCHHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333332 23455555566666666666666666554433
No 16
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=82.84 E-value=53 Score=32.65 Aligned_cols=110 Identities=25% Similarity=0.261 Sum_probs=62.4
Q ss_pred CCchHHHHHHHHHHH--HHHHhhHHHHHHHHHHH----hhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 010974 1 MSDSEKLMALKKAYA--DIILNTAKEAAARIMVS----ERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLC 74 (496)
Q Consensus 1 MadSekl~ALkkAya--diilntaKEaAaRvm~a----Erka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~ 74 (496)
|+||+++. ..++- +-=|.-++.+.|.||+. ||+....+....--...|..+|-.=..-+-.+..+ +++++.
T Consensus 22 ~EDp~~~l--~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~-~~~~le 98 (225)
T COG1842 22 AEDPEKML--EQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALE-EKQSLE 98 (225)
T ss_pred hcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHH
Confidence 57888652 22222 22344566777777764 55555555555555555554443322222112222 234443
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
..+..+++++..+.+.+..|+..+.++...+.+++....
T Consensus 99 --~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 99 --DLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888887777777766554
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.04 E-value=22 Score=34.82 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 010974 23 KEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLRE 102 (496)
Q Consensus 23 KEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~ 102 (496)
..+..|+=..|+.-+.++++|..+.++ .+....|-.-..-.-...|.+|+++...+..-+..++.|++.
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNT-----------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665544 222222211111112223555666655555555555555555
Q ss_pred HHHHHHHHHHh
Q 010974 103 AQDELERATYN 113 (496)
Q Consensus 103 ~~~eLEk~r~~ 113 (496)
+..+++..+.+
T Consensus 158 l~~~~~~~~~~ 168 (206)
T PRK10884 158 ANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 18
>PRK04406 hypothetical protein; Provisional
Probab=81.78 E-value=7.2 Score=32.72 Aligned_cols=51 Identities=14% Similarity=0.354 Sum_probs=37.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
.|+.+|.+-|+...-|..-|++|-..+-+-+--|..|+.+|+++.+.|..+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788888888777888888888877777777777777777776666543
No 19
>PRK00106 hypothetical protein; Provisional
Probab=79.85 E-value=86 Score=35.01 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH-HHhhHHHHHHH-HHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------
Q 010974 6 KLMALKKAYADIILNTAKEAAARIM-VSERKTIRYQQ-ELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQ------- 76 (496)
Q Consensus 6 kl~ALkkAyadiilntaKEaAaRvm-~aErka~~~~q-el~~~Keeal~~LlRLK~~~daki~EaE~~sl~~q------- 76 (496)
||..-|.|.-=++|. |+..|..++ -|+++|..+.. -...|+++...+.+..++-+..+-.|.|..--.++
T Consensus 25 ~~~~~~~~~~~~~~~-A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE 103 (535)
T PRK00106 25 KMKSAKEAAELTLLN-AEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIE 103 (535)
T ss_pred HHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333444 444444444 45666654432 23345556666666665555544444432211111
Q ss_pred --------------hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 77 --------------RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 77 --------------rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
+.++..+.+|..-+..+...+.+|.....+++.....+.+.|
T Consensus 104 ~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~L 159 (535)
T PRK00106 104 SRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAEL 159 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223333334444455555566666666666555555444
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.01 E-value=69 Score=31.57 Aligned_cols=111 Identities=22% Similarity=0.351 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhhHHHH----HHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHH
Q 010974 6 KLMALKKAYADIILNTAKEA----AARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDE 81 (496)
Q Consensus 6 kl~ALkkAyadiilntaKEa----AaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~E 81 (496)
.|.-++.-|..++-..-.++ ..+|-.....+......+..+|+|...+-..+ +.+.+++...+...-.=.+.|.+
T Consensus 170 ~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~-~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 170 ALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQI-QSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhh-hHhhhhhhccccchhhhhhhHHH
Confidence 34556667766654433332 23444455555666777777777753332222 33333333322222222334444
Q ss_pred HHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010974 82 LEAQL----GEAEDIVKDLRADLREAQDELERATYNEKQL 117 (496)
Q Consensus 82 LeaqL----~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~ 117 (496)
|+.++ ...+..|..|..||..++.++..........
T Consensus 249 le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 249 LEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 44333 3356677777777777777776554443333
No 21
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.29 E-value=90 Score=31.92 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 64 KVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 64 ki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
.+.+....--..++++.+|++||...+..|.++..+......++..+.+-.
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455667888888888888888888888877777776665443
No 22
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.77 E-value=59 Score=32.34 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHH
Q 010974 22 AKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLR 101 (496)
Q Consensus 22 aKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr 101 (496)
++.|-..+.-++++|..|+..+--+.++|..+=-+ .+-....+...+.....++.--..|++++.+++-.|..|..+-.
T Consensus 21 ~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k-~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~ 99 (246)
T PF00769_consen 21 MRRAQEALEESEETAEELEEKLKQAEEEAEELEQK-RQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESE 99 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888888888888887777432211 11112222222222222233333455566666656555555444
Q ss_pred HH
Q 010974 102 EA 103 (496)
Q Consensus 102 ~~ 103 (496)
+.
T Consensus 100 ~k 101 (246)
T PF00769_consen 100 RK 101 (246)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 23
>PRK12704 phosphodiesterase; Provisional
Probab=75.51 E-value=1.1e+02 Score=33.80 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=22.6
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
++..+.+|..-+..+..+..+|.....+++++...+.+.|
T Consensus 105 Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l 144 (520)
T PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555666666666666666665555444
No 24
>PRK00736 hypothetical protein; Provisional
Probab=75.48 E-value=15 Score=30.14 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 61 LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 61 ~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
++.+|.+.|+...-|..-|++|-..+-.-+..|..|+..|+.+...|..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776666666677777776666666666666666666655544
No 25
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.59 E-value=79 Score=29.97 Aligned_cols=105 Identities=20% Similarity=0.273 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHh----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHH
Q 010974 6 KLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAA----KEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDE 81 (496)
Q Consensus 6 kl~ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~----Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~E 81 (496)
.+..+++++|.+|-+ .+....++--.++.+..++.....| .|+.-+..|.=|+-++.++...+-.--.....++.
T Consensus 38 ~l~~a~~~~a~~~a~-~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~ 116 (221)
T PF04012_consen 38 QLRKARQALARVMAN-QKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEK 116 (221)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788877654 4455566666666666666554433 56666677777888888888887777777778888
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 82 LEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 82 LeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
|..+|..++..+.+++.+...+..-..-++
T Consensus 117 l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 117 LKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887776665554433
No 26
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.60 E-value=35 Score=28.04 Aligned_cols=56 Identities=25% Similarity=0.404 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 49 DALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 49 eal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
.||-.=+|=||.+--.+.-.-...+.- +.+|++|+.-..+|..|+..+..++|.+|
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~-------e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAF-------ESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466666777887776666555455544 44555555566666666666666666655
No 27
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.60 E-value=15 Score=38.37 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=45.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHhh--------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 60 MLDAKVNEAQVVSLCQQRKIDELEAQLG--------------EAEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 60 ~~daki~EaE~~sl~~qrki~ELeaqL~--------------eaed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
++-+|++|.|-+.-..-..|+||-.||. |||=.+++-|.|++.++.-.|.||++++.
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 4567888888776666678888888885 67778888999999999999999998763
No 28
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=72.53 E-value=65 Score=34.58 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhh
Q 010974 9 ALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGE 88 (496)
Q Consensus 9 ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~e 88 (496)
..-+||-|||-+ +--|||-+|.--.+-+-=++.+--.-|+++.||+||.. +..-|=..|.---.+-.++--||..
T Consensus 120 ~~~~~~~evlnh----~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~ek-~n~~AIkKSrpYfE~k~~~t~~le~ 194 (426)
T KOG2008|consen 120 QFDSAWQEVLNH----ATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLEK-KNKRAIKKSRPYFELKAKYTVQLEQ 194 (426)
T ss_pred hhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHhhcchHHHHHHHHHHHHHH
Confidence 345788888765 44699999876555555555555566778888888753 2222222222222223344444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 89 AEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 89 aed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
--.+|-+|.+|++..+++.-..-.++.
T Consensus 195 qk~tv~~Leaev~~~K~~Y~~slrnLE 221 (426)
T KOG2008|consen 195 QKKTVDDLEAEVTLAKGEYKMSLRNLE 221 (426)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 455777777777777766544433333
No 29
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=71.46 E-value=38 Score=31.50 Aligned_cols=30 Identities=37% Similarity=0.411 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHH------hhHHHHHHHHHHHhhHHH
Q 010974 8 MALKKAYADIIL------NTAKEAAARIMVSERKTI 37 (496)
Q Consensus 8 ~ALkkAyadiil------ntaKEaAaRvm~aErka~ 37 (496)
.+||-||+..=. +-+--||-..+|+|=+..
T Consensus 22 SalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~L 57 (131)
T PF04859_consen 22 SALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRL 57 (131)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 789999987532 223467888888885443
No 30
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=71.32 E-value=1.6e+02 Score=32.54 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=15.5
Q ss_pred CCCCCCCCceeecccCCCcccccccc
Q 010974 148 CLPDVQPDSVMASDVGNSTLNGTYEN 173 (496)
Q Consensus 148 ~~~~~~~~sv~~~~~k~~~l~~~~~~ 173 (496)
..+.....+|++...-+.-|-++--+
T Consensus 196 a~~~~~e~~~~~v~lp~d~~kgriig 221 (514)
T TIGR03319 196 AGDHVAETTVSVVNLPNDEMKGRIIG 221 (514)
T ss_pred cchhhhhheeeeEEcCChhhhccccC
Confidence 34455566666666666666666554
No 31
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.17 E-value=11 Score=39.52 Aligned_cols=48 Identities=31% Similarity=0.339 Sum_probs=44.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 010974 57 LKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQ 104 (496)
Q Consensus 57 LK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~ 104 (496)
|++.+..+|.|+|.+-.....-..-||||-.+.-..|+-||.||+.++
T Consensus 18 ~~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lq 65 (404)
T KOG0728|consen 18 LRQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQ 65 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999999999999999998765
No 32
>PHA03161 hypothetical protein; Provisional
Probab=71.05 E-value=32 Score=32.87 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=40.9
Q ss_pred HHHHHHHH-HHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 49 DALRMLLR-LKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 49 eal~~LlR-LK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
..+.++|. |-..|..|-+|.++-+--..+|++.+|+ .+|.|.+|+.||.- |||-+...
T Consensus 57 ~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~----L~drv~eLkeel~~---ELe~l~~~ 115 (150)
T PHA03161 57 KSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAED----LQDKILELKEDIHF---EIEALNHG 115 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHhcC
Confidence 34555544 4555666777777777778889998887 78899999998864 56555544
No 33
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=70.24 E-value=50 Score=39.16 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHH-----HHh---------------------hhhhHHHHHHHHHHHHHh
Q 010974 24 EAAARIMVSERKTIRYQQELFAAKEDALRMLLR-----LKQ---------------------MLDAKVNEAQVVSLCQQR 77 (496)
Q Consensus 24 EaAaRvm~aErka~~~~qel~~~Keeal~~LlR-----LK~---------------------~~daki~EaE~~sl~~qr 77 (496)
|++--.|..+=.|.-|-|+|.+-|+++-.-||- .-+ ..+-..++.+.+-..-|.
T Consensus 34 es~edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn 113 (1265)
T KOG0976|consen 34 ESHEDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQN 113 (1265)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445556666777777778888777766554432 111 123355666666666777
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
+..+||-|++..||+|..++..|++...|||..+.-.
T Consensus 114 ~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srl 150 (1265)
T KOG0976|consen 114 KCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRL 150 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 8888999999999999999999999999999988764
No 34
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.52 E-value=1.8e+02 Score=31.97 Aligned_cols=90 Identities=26% Similarity=0.398 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHH------HhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhH
Q 010974 7 LMALKKAYADII------LNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKID 80 (496)
Q Consensus 7 l~ALkkAyadii------lntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ 80 (496)
|..|++=|+..+ +.-|.+|..-.-+.++++-.+..||..+|+.-... ++.+ +++.-...++ .+.....+.
T Consensus 139 L~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~--~~a~-~eAeee~~~~-~~~~~~~~~ 214 (522)
T PF05701_consen 139 LEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA--KLAH-IEAEEERIEI-AAEREQDAE 214 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHH-HHHHHHHHH
Confidence 345566666554 55666777777788889999999999888765443 3332 2222111111 112223344
Q ss_pred HHHHHhhhhHHHHHHHHHHH
Q 010974 81 ELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 81 ELeaqL~eaed~v~~Lr~EL 100 (496)
.++..|.+++..|..|+.++
T Consensus 215 ~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 215 EWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444
No 35
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=69.14 E-value=45 Score=42.37 Aligned_cols=85 Identities=21% Similarity=0.329 Sum_probs=69.2
Q ss_pred HHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 010974 29 IMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELE 108 (496)
Q Consensus 29 vm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLE 108 (496)
-|--|+.-..|+.+| .+-.+.+.-+-..++-++.+..-.|.....-+.+++++.+.+..++-.|.+|+..++.+..+||
T Consensus 1036 r~e~Ek~~rkle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le 1114 (1930)
T KOG0161|consen 1036 RMELEKAKRKLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELE 1114 (1930)
T ss_pred HHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677778889999 6666777778899999999999999888888999999999888888888888888777777777
Q ss_pred HHHHhh
Q 010974 109 RATYNE 114 (496)
Q Consensus 109 k~r~~q 114 (496)
.-|+..
T Consensus 1115 ~er~~r 1120 (1930)
T KOG0161|consen 1115 AERASR 1120 (1930)
T ss_pred HHHHHH
Confidence 665543
No 36
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.07 E-value=1.5e+02 Score=30.81 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 63 AKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 63 aki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.+|.+....-...++++++++.||.+..+.|.++..+..+.+.++-.+++.
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556778888888888888888888888888888777777664
No 37
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=68.95 E-value=13 Score=32.07 Aligned_cols=50 Identities=26% Similarity=0.295 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 010974 63 AKVNEAQVVSLCQQRKIDELEAQLGEAED-----IVKDLRADLREAQDELERATY 112 (496)
Q Consensus 63 aki~EaE~~sl~~qrki~ELeaqL~eaed-----~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+.|.-++-.-...|.|+.+||+|..++|+ +|+.++....++...|..+++
T Consensus 8 ~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 8 AEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 33444444455678899999999999996 688899999999999998886
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=67.90 E-value=1.4e+02 Score=34.25 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhH
Q 010974 5 EKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAK 47 (496)
Q Consensus 5 ekl~ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~K 47 (496)
+-|.+|.|=++|-. .++-++-.=+.+|||+..-+++ .+++
T Consensus 488 q~l~~LEkrL~eE~--~~R~~lEkQL~eErk~r~~ee~-~aar 527 (697)
T PF09726_consen 488 QSLQQLEKRLAEER--RQRASLEKQLQEERKARKEEEE-KAAR 527 (697)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHH-hhhh
Confidence 33566666666532 3344444457788888776665 4444
No 39
>PRK00106 hypothetical protein; Provisional
Probab=66.83 E-value=2.2e+02 Score=31.94 Aligned_cols=27 Identities=7% Similarity=0.110 Sum_probs=17.1
Q ss_pred CCCCCCCCCceeecccCCCcccccccc
Q 010974 147 PCLPDVQPDSVMASDVGNSTLNGTYEN 173 (496)
Q Consensus 147 ~~~~~~~~~sv~~~~~k~~~l~~~~~~ 173 (496)
+..+.....+|++...-+.-|-++--+
T Consensus 216 ~a~~~~~e~tvs~v~lp~demkGriIG 242 (535)
T PRK00106 216 LAGEYVTEQTITTVHLPDDNMKGRIIG 242 (535)
T ss_pred hcchhhhhheeeeEEcCChHhhcceeC
Confidence 344555666777777776666666655
No 40
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=66.57 E-value=23 Score=35.33 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 63 AKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 63 aki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
.++.-.|..+-.+.+-.-+|..||...+.-|.+||-.+.+.+.+|+++...|.+
T Consensus 40 ~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 40 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444445566888888888889999999999999999999988864
No 41
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.61 E-value=1.7e+02 Score=30.23 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010974 92 IVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 92 ~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.|..|+.+|...+.+|..++..
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~~ 276 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQR 276 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888877777776544
No 42
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=65.38 E-value=48 Score=31.40 Aligned_cols=61 Identities=25% Similarity=0.374 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 50 ALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 50 al~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
++..|+-.-.-+-.-+.+++. -...+.+|+.|+++..+....|+++-.+|..++.+|..+-
T Consensus 3 ~~~~L~~~d~~L~~~L~~l~~-hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 3 LAEDLIEADDELSSALEELQE-HQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555542 3344788999999999999999999999999999999887
No 43
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=65.13 E-value=48 Score=34.90 Aligned_cols=83 Identities=27% Similarity=0.310 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH--HHHhhhHHHHHHhhh
Q 010974 11 KKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSL--CQQRKIDELEAQLGE 88 (496)
Q Consensus 11 kkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl--~~qrki~ELeaqL~e 88 (496)
-+++-|+-++++-++...+|.+|--++.+- +-+.++++||+-++-.+ |.=+.+| --++.|+|+-+-|++
T Consensus 230 ~re~~d~W~~~ae~~~~e~~~S~efak~~G--------~lvna~m~lr~~~qe~~-e~~L~~LnlPTRsElDe~~krL~E 300 (320)
T TIGR01834 230 AKALYDLWVIAAEEAYAEVFASEENAKVHG--------KFINALMRLRIQQQEIV-EALLKMLNLPTRSELDEAHQRIQQ 300 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHH--------HHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHHHHH
Confidence 357778999999999999999987766553 33456677777666433 3223333 356777777776655
Q ss_pred hHHHHHHHHHHHHH
Q 010974 89 AEDIVKDLRADLRE 102 (496)
Q Consensus 89 aed~v~~Lr~ELr~ 102 (496)
.+.-|++|+.+|+.
T Consensus 301 LrR~vr~L~k~l~~ 314 (320)
T TIGR01834 301 LRREVKSLKKRLGD 314 (320)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 44
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=65.06 E-value=29 Score=38.60 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 51 LRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 51 l~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
+.=|++.+|++|+|..--...+..=+++.+..|..+.-..+-+..+...++++++||+-.|.+-
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4457777777777777666666666666776666666666667777777777777777776653
No 45
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=64.95 E-value=1.4e+02 Score=29.13 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=53.8
Q ss_pred HHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHH
Q 010974 18 ILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRML---LRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVK 94 (496)
Q Consensus 18 ilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~L---lRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~ 94 (496)
-++.+.........++.....-..++..-+++-++-+ .+=...+...+...+...-.++.+|++|+.|+.+.+.+-.
T Consensus 22 ~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444544444443333 2223344556666666666777777777777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 010974 95 DLRADLREAQDELER 109 (496)
Q Consensus 95 ~Lr~ELr~~~~eLEk 109 (496)
.|.--|.+.-+.|+.
T Consensus 102 ~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 102 ELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776666666666665
No 46
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=64.81 E-value=1.4e+02 Score=28.86 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=57.1
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 41 QELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQ----QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 41 qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~----qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
..+...+...+..|-+.|.-++..-.+.|...+.. .+.++-+++.|..|+..|...+.+.+..-.+|...+..-
T Consensus 110 ~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~ 187 (236)
T cd07651 110 EKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIW 187 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888888888777766443322 167899999999999999999999988888888876653
No 47
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.07 E-value=72 Score=33.91 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhHHHHHHH-HHHHhHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHhhhHHHHHHhhhhHHHHHH
Q 010974 22 AKEAAARIMVSERKTIRYQQ-ELFAAKEDALRMLLRLKQMLDAK-----VNEAQVVSLCQQRKIDELEAQLGEAEDIVKD 95 (496)
Q Consensus 22 aKEaAaRvm~aErka~~~~q-el~~~Keeal~~LlRLK~~~dak-----i~EaE~~sl~~qrki~ELeaqL~eaed~v~~ 95 (496)
-+||--|--+-||+-...++ +-+.-+++|+++|-++-.-+.++ -+|.|+ .-.+-+||.|||+|.-+-||.+.-
T Consensus 347 ~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqkeeek-lk~e~qkikeleek~~eeedal~~ 425 (445)
T KOG2891|consen 347 EEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEEK-LKAEEQKIKELEEKIKEEEDALLL 425 (445)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655544 34556789999988887666653 344442 345667899999999988887654
Q ss_pred HHHHHH
Q 010974 96 LRADLR 101 (496)
Q Consensus 96 Lr~ELr 101 (496)
-..-|+
T Consensus 426 all~~q 431 (445)
T KOG2891|consen 426 ALLNLQ 431 (445)
T ss_pred HHHhhH
Confidence 444443
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=62.96 E-value=2.8e+02 Score=31.75 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.2
Q ss_pred hhhhhh
Q 010974 215 IHAFER 220 (496)
Q Consensus 215 IrAle~ 220 (496)
|..++.
T Consensus 960 l~~l~~ 965 (1164)
T TIGR02169 960 LQRVEE 965 (1164)
T ss_pred HHHHHH
Confidence 333333
No 49
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=62.61 E-value=2.3e+02 Score=34.78 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=12.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHH
Q 010974 25 AAARIMVSERKTIRYQQELFAAKEDAL 51 (496)
Q Consensus 25 aAaRvm~aErka~~~~qel~~~Keeal 51 (496)
|+.+.-.+.+....+++++..+.+++.
T Consensus 873 A~~~~~~a~~~le~ae~~l~~~~~e~~ 899 (1353)
T TIGR02680 873 AATRAAEQRARAARAESDAREAAEDAA 899 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 50
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=61.98 E-value=5.5 Score=35.19 Aligned_cols=78 Identities=27% Similarity=0.322 Sum_probs=55.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHh----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHH
Q 010974 25 AAARIMVSERKTIRYQQELFAA----KEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 25 aAaRvm~aErka~~~~qel~~~----Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~EL 100 (496)
..++...+|+.-..+++||..- =+||=.| +..|......=+.|...|+.||.+++.+|..|+.+|
T Consensus 6 e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~M-----------Va~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL 74 (100)
T PF06428_consen 6 ERERREEAEQEKEQIESELEELTASLFEEANKM-----------VADARRERAALEEKNEQLEKQLKEKEALLESLQAQL 74 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888877432 2555444 455666666667888999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 010974 101 REAQDELERATYN 113 (496)
Q Consensus 101 r~~~~eLEk~r~~ 113 (496)
+.+..-++.+...
T Consensus 75 ~~LK~v~~~~~~~ 87 (100)
T PF06428_consen 75 KELKTVMESMESE 87 (100)
T ss_dssp SHHHHCTTT----
T ss_pred HHHHHHHHHcccc
Confidence 9998888776554
No 51
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=61.78 E-value=79 Score=33.30 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=13.5
Q ss_pred CchHHHHHHHHHHHHHHHhh
Q 010974 2 SDSEKLMALKKAYADIILNT 21 (496)
Q Consensus 2 adSekl~ALkkAyadiilnt 21 (496)
.||+.-..+=.|++++.++.
T Consensus 131 ~dP~~Aa~i~n~l~~~yi~~ 150 (498)
T TIGR03007 131 KDPELAKDVVQTLLTIFVEE 150 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 36777777777777766554
No 52
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.16 E-value=62 Score=33.46 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 49 DALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 49 eal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
++-+|...-|+.++.++...+...-..+-+..+.|+.+.++.+.|.+.+..|.++..+.-++.++.
T Consensus 186 ~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~ 251 (269)
T PF05278_consen 186 DQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTI 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888777777677888889999999999999999999988888877776653
No 53
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=60.00 E-value=89 Score=38.58 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=21.6
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
++++||-....-|-.+-++.+||-.++.+|+.+...
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345555555555566666666666666666666544
No 54
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=59.86 E-value=2.9e+02 Score=31.00 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHHHHHHh
Q 010974 3 DSEKLMALKKAYADIILN 20 (496)
Q Consensus 3 dSekl~ALkkAyadiiln 20 (496)
||++-..+-.++|+..+.
T Consensus 165 dP~~Aa~iaN~la~~Y~~ 182 (754)
T TIGR01005 165 DPKLAAAIPDAIAAAYIA 182 (754)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 566655555555555543
No 55
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.40 E-value=35 Score=27.83 Aligned_cols=40 Identities=28% Similarity=0.472 Sum_probs=32.9
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
..+|.+||.+|--.+++|..|-..+-+-+.+++.++....
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999988888888888887776544
No 56
>PRK09039 hypothetical protein; Validated
Probab=59.15 E-value=2.3e+02 Score=29.57 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 010974 95 DLRADLREAQDELER 109 (496)
Q Consensus 95 ~Lr~ELr~~~~eLEk 109 (496)
+.+..+...+.+|+.
T Consensus 169 ~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 169 ESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 57
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=59.01 E-value=2.1e+02 Score=29.12 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=10.1
Q ss_pred chHHHHHHHHHH---HHHHHhh
Q 010974 3 DSEKLMALKKAY---ADIILNT 21 (496)
Q Consensus 3 dSekl~ALkkAy---adiilnt 21 (496)
||+.-..+-.++ ++-.+|.
T Consensus 141 dP~~A~~ian~l~~~~~~~i~~ 162 (362)
T TIGR01010 141 DAEEAQKINQRLLKEGERLINR 162 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 566655555666 4444443
No 58
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=58.60 E-value=1.3e+02 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=17.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 80 DELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 80 ~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
.++++....+.+-|.+|+.+|..++..+..
T Consensus 84 ~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~ 113 (139)
T PF05615_consen 84 EEIEQEIEQAKKEIEELKEELEEAKRVRQN 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666655543
No 59
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=58.52 E-value=45 Score=26.23 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=28.5
Q ss_pred HHHhhhHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHh
Q 010974 74 CQQRKIDELEAQLGEAEDIVKDLRADLREA---QDELERATYN 113 (496)
Q Consensus 74 ~~qrki~ELeaqL~eaed~v~~Lr~ELr~~---~~eLEk~r~~ 113 (496)
..++.|.+|+.++...+.-..+|+.|+.++ .+.+|+....
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~ 63 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVARE 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344567788888888888888888888877 4566665543
No 60
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=58.52 E-value=1.4e+02 Score=26.90 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010974 63 AKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQL 117 (496)
Q Consensus 63 aki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~ 117 (496)
.++.++|...-..+.+...|+.++..++..+..++.|+++.+.-+...+......
T Consensus 80 ~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e 134 (151)
T PF11559_consen 80 EQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHE 134 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566555566666667777777777777777777777776666666555443
No 61
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=58.45 E-value=2.2e+02 Score=36.73 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHH
Q 010974 35 KTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQV 70 (496)
Q Consensus 35 ka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~ 70 (496)
++..+...|.-+++ .+..|-|....+-..|.+++.
T Consensus 1471 el~kl~~~lee~~e-~~e~l~renk~l~~ei~dl~~ 1505 (1930)
T KOG0161|consen 1471 ELQKLKNALEELLE-QLEELRRENKNLSQEIEDLEE 1505 (1930)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444 455555555555555544443
No 62
>PRK04406 hypothetical protein; Provisional
Probab=58.17 E-value=43 Score=28.16 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=33.3
Q ss_pred HHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 74 CQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 74 ~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
.-..||.+||.+|--.||+|.+|-..+-+-+.+++.++...
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34469999999999999999999888888887777776543
No 63
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.14 E-value=1.5e+02 Score=31.97 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=24.1
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
.++.+|.+++.+++..+++|+.+|.+++.+|..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345566666667777777777777777777766654
No 64
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=57.65 E-value=40 Score=29.79 Aligned_cols=34 Identities=21% Similarity=0.515 Sum_probs=26.7
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+..|++++..++..+..|+..+++...++..++.
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888888888877754
No 65
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.01 E-value=41 Score=34.62 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=46.9
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 58 KQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 58 K~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
.+--|+++.+.+..--.-|.+|+-|.+|+.+.+..+.+++.|..+.+.+++++.+.-.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888888888888888888888888888888888888877766544
No 66
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=56.50 E-value=2.1e+02 Score=28.27 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=7.2
Q ss_pred HHHHHHHHHhHHHHH
Q 010974 37 IRYQQELFAAKEDAL 51 (496)
Q Consensus 37 ~~~~qel~~~Keeal 51 (496)
..|++++...+++|.
T Consensus 92 eGy~eG~~~G~~e~~ 106 (255)
T TIGR03825 92 EGYEAGFQAGESEAL 106 (255)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555554443
No 67
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=55.77 E-value=44 Score=26.32 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=30.0
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
....|++||.++...+.-...|+.++..+..++..+..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567888888888888888888888888888777664
No 68
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=55.57 E-value=3.7e+02 Score=30.81 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=4.5
Q ss_pred hhHHHHHHHHH
Q 010974 33 ERKTIRYQQEL 43 (496)
Q Consensus 33 Erka~~~~qel 43 (496)
+++...+++++
T Consensus 307 ~~~~~~~~~~l 317 (1164)
T TIGR02169 307 ERSIAEKEREL 317 (1164)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 69
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=55.35 E-value=90 Score=29.23 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=21.8
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQ 104 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~ 104 (496)
...|++.++.++.+++..+..++.++....
T Consensus 161 ~~~k~~~~~~ei~~~~~~~~~~~~~~~~is 190 (236)
T PF09325_consen 161 RQDKVEQAENEIEEAERRVEQAKDEFEEIS 190 (236)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888877777776665543
No 70
>smart00338 BRLZ basic region leucin zipper.
Probab=55.10 E-value=43 Score=26.40 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=29.8
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
+..|++||.+++..+.-..+|+.++..+..++..++..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888888887777654
No 71
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.90 E-value=57 Score=30.02 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 89 AEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 89 aed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+.+.|..|+.|+......|+.++.
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555554
No 72
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=54.81 E-value=74 Score=36.60 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 51 LRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 51 l~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
|+-+.|++...--.+.|.|..--.-+..|+++--+..|.+..|-.-+.||-++..+.|+++-.+....
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 66677888777777777776655555667777666666666666667777777777777666655443
No 73
>PRK11519 tyrosine kinase; Provisional
Probab=54.78 E-value=3.4e+02 Score=30.77 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=13.6
Q ss_pred CchHHHHHHHHHHHHHHHhhHH
Q 010974 2 SDSEKLMALKKAYADIILNTAK 23 (496)
Q Consensus 2 adSekl~ALkkAyadiilntaK 23 (496)
.|+++-..+-.|+|+..++..-
T Consensus 237 ~dP~~Aa~iaN~l~~~Yi~~~~ 258 (719)
T PRK11519 237 EDREQIRDILNSITRNYLEQNI 258 (719)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4677766666666666655443
No 74
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=54.00 E-value=1.8e+02 Score=27.97 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=11.7
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~EL 100 (496)
..+|.+|+.++.+.+..+.+|+..+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~ 150 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKC 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554444444444444433
No 75
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.24 E-value=1.8e+02 Score=26.41 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=17.2
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREA 103 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~ 103 (496)
..||++|+.++.+++.-+..++.++...
T Consensus 144 ~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 144 PAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777766666555544443
No 76
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=53.10 E-value=4.8e+02 Score=31.38 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=4.9
Q ss_pred hhhhhhhhh
Q 010974 213 QRIHAFERN 221 (496)
Q Consensus 213 QRIrAle~n 221 (496)
.+|+.++..
T Consensus 949 ~~i~~le~~ 957 (1163)
T COG1196 949 REIERLEEE 957 (1163)
T ss_pred HHHHHHHHH
Confidence 455555554
No 77
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=52.69 E-value=33 Score=28.15 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=27.9
Q ss_pred HHhhHHH-HHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHh
Q 010974 31 VSERKTI-RYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQL 86 (496)
Q Consensus 31 ~aErka~-~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL 86 (496)
-||=+|. .++.||-.+|..-+. +..++.|+|.....-..+|+.|+.++
T Consensus 7 ~~EirakQ~~~eEL~kvk~~n~~--------~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 7 EAEIRAKQAIQEELTKVKSANLA--------FESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455553 467777777766554 46677788865544444444444443
No 78
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=51.96 E-value=2.4e+02 Score=27.57 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhHH
Q 010974 23 KEAAARIMVSERKTIRYQQELFAAKE 48 (496)
Q Consensus 23 KEaAaRvm~aErka~~~~qel~~~Ke 48 (496)
..|=.|+-.+|.|...++.+|..+..
T Consensus 130 e~aEeR~e~~E~ki~eLE~el~~~~~ 155 (237)
T PF00261_consen 130 ERAEERAEAAESKIKELEEELKSVGN 155 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 33445666677777777777766543
No 79
>PRK00736 hypothetical protein; Provisional
Probab=51.12 E-value=48 Score=27.28 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=31.7
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.+|.+||.+|--.|++|.+|-..+-+-+.++..++..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~q 41 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKK 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999998888888777777654
No 80
>PRK00295 hypothetical protein; Provisional
Probab=50.44 E-value=54 Score=26.97 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=30.0
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.+|.+||.+|--.||+|.+|-..+-+-+.++..++..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999888877777666666644
No 81
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=50.34 E-value=1.2e+02 Score=26.53 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=27.4
Q ss_pred HHHhhhHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 74 CQQRKIDELEAQLGEA--EDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 74 ~~qrki~ELeaqL~ea--ed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.+.+|++.+|.++... .+-|.+|+.++-+++.++..+.-.
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4567777777777776 667777777777777666665543
No 82
>PRK02224 chromosome segregation protein; Provisional
Probab=50.14 E-value=4.3e+02 Score=30.02 Aligned_cols=20 Identities=5% Similarity=0.034 Sum_probs=10.9
Q ss_pred HHHHHhhHHHHHHHHHHHhH
Q 010974 28 RIMVSERKTIRYQQELFAAK 47 (496)
Q Consensus 28 Rvm~aErka~~~~qel~~~K 47 (496)
++-..++++..++.++...+
T Consensus 531 ~le~~~~~~~~l~~e~~~l~ 550 (880)
T PRK02224 531 TIEEKRERAEELRERAAELE 550 (880)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 34445555666666655553
No 83
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=49.93 E-value=2.4e+02 Score=32.87 Aligned_cols=57 Identities=28% Similarity=0.282 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
.+..++.-.|..+-..+.+|.+||+.|+.+.+...+-+..|.-+++||--+-....+
T Consensus 402 ~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAq 458 (717)
T PF09730_consen 402 NLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQ 458 (717)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555677999999999999999999888888888888777766654
No 84
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.87 E-value=2.4e+02 Score=27.04 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=39.9
Q ss_pred HHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Q 010974 74 CQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDEQNS 123 (496)
Q Consensus 74 ~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l~~~~~ 123 (496)
......+....++.+.++.+..++..|..+...|...|....+.+...-|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifp 158 (302)
T PF10186_consen 109 ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFP 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455677778888888999999999999999999999988887755443
No 85
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.94 E-value=67 Score=32.16 Aligned_cols=55 Identities=29% Similarity=0.439 Sum_probs=39.9
Q ss_pred HHHHhhhhh-------HHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 55 LRLKQMLDA-------KVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 55 lRLK~~~da-------ki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
-+|++.+|. .|.+.--.-......++||+.+|..|-.+|..+|..|+.+...+-.
T Consensus 38 ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~ 99 (291)
T PF10475_consen 38 EKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTK 99 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455555553 2233333335566789999999999999999999999999877533
No 86
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=48.57 E-value=2.7e+02 Score=27.15 Aligned_cols=105 Identities=14% Similarity=0.233 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhHHH------HHHHH--------------HHHhHHHHHHHHHHHHhhhhhHHHHH
Q 010974 9 ALKKAYADIILNTAKEAAARIMVSERKTI------RYQQE--------------LFAAKEDALRMLLRLKQMLDAKVNEA 68 (496)
Q Consensus 9 ALkkAyadiilntaKEaAaRvm~aErka~------~~~qe--------------l~~~Keeal~~LlRLK~~~daki~Ea 68 (496)
.|+.||-.|+..|...|..+..++++=-. .|..+ +...+...+..|.+.|.-++..-.|+
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777888888888888777777664222 12111 12223344566667777777777777
Q ss_pred HHHH--------HHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 69 QVVS--------LCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 69 E~~s--------l~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
|.+. ...++.++-++.+|..++..+..-+.+.+..-..|+.++..
T Consensus 137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~ 189 (239)
T cd07647 137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVE 189 (239)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7532 12345678888888888888877777777777777776644
No 87
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=48.53 E-value=2.7e+02 Score=27.16 Aligned_cols=77 Identities=25% Similarity=0.272 Sum_probs=46.6
Q ss_pred HHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-hHHHHHHhhhhHHHHH
Q 010974 16 DIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRK-IDELEAQLGEAEDIVK 94 (496)
Q Consensus 16 diilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrk-i~ELeaqL~eaed~v~ 94 (496)
+.|...-.+|...---++..-..|++.|..+|.+|-.++-.-+.-.+.. .-..+.+ .+|++..+.+|+.-|.
T Consensus 87 ~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~-------~e~~~~~a~~ea~~~l~~Ae~~I~ 159 (204)
T PRK09174 87 DRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAK-------AEAERAAIEASLEKKLKEAEARIA 159 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777888888999999999999988776554332221 1111111 1345555566665555
Q ss_pred HHHHH
Q 010974 95 DLRAD 99 (496)
Q Consensus 95 ~Lr~E 99 (496)
..|..
T Consensus 160 ~ek~~ 164 (204)
T PRK09174 160 AIKAK 164 (204)
T ss_pred HHHHH
Confidence 55443
No 88
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=48.29 E-value=46 Score=27.64 Aligned_cols=75 Identities=29% Similarity=0.380 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhHHHHHHH-HHHHh-H---------HHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhhHHHHHHhhhh
Q 010974 22 AKEAAARIMVSERKTIRYQQ-ELFAA-K---------EDALRMLLRLKQMLD-AKVNEAQVVSLCQQRKIDELEAQLGEA 89 (496)
Q Consensus 22 aKEaAaRvm~aErka~~~~q-el~~~-K---------eeal~~LlRLK~~~d-aki~EaE~~sl~~qrki~ELeaqL~ea 89 (496)
..|+|...=++.+-...|+. +|... + ++.|..|-.++.+.+ .-+.-+++ +.+=.|..|++.+
T Consensus 4 i~e~A~~~gvs~~tLr~ye~~Gli~p~r~~~g~R~y~~~dv~~l~~i~~L~~d~g~~l~~i------~~~l~l~~~~~~l 77 (91)
T cd04766 4 ISVAAELSGMHPQTLRLYERLGLLSPSRTDGGTRRYSERDIERLRRIQRLTQELGVNLAGV------KRILELEEELAEL 77 (91)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCcCCCcCCCCCeeECHHHHHHHHHHHHHHHHcCCCHHHH------HHHHHHHHHHHHH
Confidence 34555555555555555542 22222 2 234555555555444 44333333 3444477888777
Q ss_pred HHHHHHHHHHHHH
Q 010974 90 EDIVKDLRADLRE 102 (496)
Q Consensus 90 ed~v~~Lr~ELr~ 102 (496)
+.-+..||..|++
T Consensus 78 ~~~l~~l~~~~~~ 90 (91)
T cd04766 78 RAELDELRARLRR 90 (91)
T ss_pred HHHHHHHHHHhcc
Confidence 7788888877764
No 89
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=47.32 E-value=4.1e+02 Score=31.31 Aligned_cols=90 Identities=30% Similarity=0.361 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHH
Q 010974 22 AKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM------LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKD 95 (496)
Q Consensus 22 aKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~------~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~ 95 (496)
.+..-.++--+|.+...++-+|..+++=.=.+=..|+.| ++.++.++|..--.-+.||.-||.+|+.----=.+
T Consensus 619 lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e 698 (769)
T PF05911_consen 619 LESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEE 698 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 355667888889999999999998886554444445444 56665544333334566777777776654333333
Q ss_pred HHHHHHHHHHHHHHHH
Q 010974 96 LRADLREAQDELERAT 111 (496)
Q Consensus 96 Lr~ELr~~~~eLEk~r 111 (496)
+-+.-+.++.+|+.+.
T Consensus 699 ~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 699 LEAKCRELEEELERMK 714 (769)
T ss_pred hhhHHHHHHHHHHhhh
Confidence 3334444555555543
No 90
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.97 E-value=4.4e+02 Score=29.20 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=10.0
Q ss_pred hhhhhhhccCCCCC
Q 010974 216 HAFERNILEGNLSL 229 (496)
Q Consensus 216 rAle~nl~~g~ls~ 229 (496)
.|||.-+.+|..-|
T Consensus 262 ~~l~~li~dgrihp 275 (514)
T TIGR03319 262 MALEKLIQDGRIHP 275 (514)
T ss_pred HHHHHHHHcCCCCH
Confidence 37888788888554
No 91
>PRK04325 hypothetical protein; Provisional
Probab=46.85 E-value=59 Score=27.14 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=30.3
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.+|.+||.+|--.|++|.+|-..+-+-+.++..++..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~q 45 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQ 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999988888777777666644
No 92
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=46.55 E-value=1.2e+02 Score=31.98 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=36.6
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
-++||..-+.+.+.+|-=|+.+|++.+++++.+.+.+.+-.
T Consensus 265 fm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 265 FMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVS 305 (330)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999999999999987655
No 93
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.39 E-value=60 Score=27.23 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHH--------------HHHHHHHhh
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQD--------------ELERATYNE 114 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~--------------eLEk~r~~q 114 (496)
.+.||++.+.|=|+|+-|+.|+.+.+. +.++++..+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 94
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=46.37 E-value=1.4e+02 Score=34.92 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhH-HHHHHhhhhHHHHHHHHHHHH
Q 010974 50 ALRMLLRLKQMLDAKVNEAQVVSLCQQRKID-ELEAQLGEAEDIVKDLRADLR 101 (496)
Q Consensus 50 al~~LlRLK~~~daki~EaE~~sl~~qrki~-ELeaqL~eaed~v~~Lr~ELr 101 (496)
.++-|...+.=-+-+|.||=.....+..|+. |||++|.++...+..+.+|-.
T Consensus 57 c~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~ 109 (769)
T PF05911_consen 57 CMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENS 109 (769)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3333444455556688888888888888888 999998888887777776643
No 95
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=46.26 E-value=24 Score=43.06 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHh
Q 010974 7 LMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQL 86 (496)
Q Consensus 7 l~ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL 86 (496)
+.-||.+--.=-+|+..+|+.++.-|||++-.--.+|.++.+.+ |.-..|+.+-.+.+. ...+++.+.||++.|
T Consensus 1290 ~~~ik~sdi~GA~~~~r~a~~~s~ea~~r~~~s~~~l~s~~~~s-----R~e~l~~k~k~~f~~-~~~n~~~L~el~~~l 1363 (1758)
T KOG0994|consen 1290 LEKIKESDILGAFNSTRHAYEQSAEAERRVDASSRELASLVDQS-----RVEELLVKQKGDFGG-LAENSRLLVELRAEL 1363 (1758)
T ss_pred HHHhhccCchhHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhh-----HHHHHHHHhhhcccc-cccccHHHHHHHHHh
Confidence 34444443333578999999999999999999999999999998 777777777777776 667778888888766
Q ss_pred hhhH
Q 010974 87 GEAE 90 (496)
Q Consensus 87 ~eae 90 (496)
+...
T Consensus 1364 ~sL~ 1367 (1758)
T KOG0994|consen 1364 SSLP 1367 (1758)
T ss_pred cCCC
Confidence 6544
No 96
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=45.86 E-value=6.1e+02 Score=30.52 Aligned_cols=38 Identities=39% Similarity=0.587 Sum_probs=19.8
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
...|..|++++.++.+.+.++..++.+++..+..+...
T Consensus 445 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1163)
T COG1196 445 NEELEELEEQLEELRDRLKELERELAELQEELQRLEKE 482 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555444443
No 97
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.62 E-value=38 Score=34.03 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=32.5
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHhh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDE----LERATYNE 114 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~e----LEk~r~~q 114 (496)
+.|..|||++|...+..|..||.|+..++.. -||+|.-|
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999888765 46666653
No 98
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=45.47 E-value=1.8e+02 Score=25.75 Aligned_cols=52 Identities=17% Similarity=0.356 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHH
Q 010974 50 ALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLR 101 (496)
Q Consensus 50 al~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr 101 (496)
++..||=....+...+...+-..-..+..++.|+..+.+..+.+..|+.|+|
T Consensus 67 ~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 67 SIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444455555566666666666666666677777766666666666666653
No 99
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=45.06 E-value=4.6e+02 Score=28.90 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=29.0
Q ss_pred HHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 70 VVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 70 ~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
.....+|++++||-++=..+.+.|+++..+.-+++..-+..+.-..
T Consensus 217 ~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~~ 262 (420)
T COG4942 217 SELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAA 262 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777666665555554444433
No 100
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.75 E-value=77 Score=34.60 Aligned_cols=58 Identities=28% Similarity=0.306 Sum_probs=36.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 56 RLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 56 RLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
||+| ++..|.+.+..--.++.+...||.+|...+.-|.++..+|.+..+.|.+.+...
T Consensus 39 ~l~q-~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 39 QLKQ-IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 4444 355565556555556666666777777777777777777776666666665544
No 101
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=44.43 E-value=1e+02 Score=29.12 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 010974 51 LRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREA 103 (496)
Q Consensus 51 l~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~ 103 (496)
+.-|++||++ +.-.||.....++++..+.-+++..|+..+.+.|....+-
T Consensus 2 i~~Ll~IK~~---R~drAe~a~~~q~~~l~~a~~~~~~a~~~l~dyr~wr~~e 51 (152)
T PF07321_consen 2 ISRLLRIKHL---REDRAERALRRQERRLQEARAALQQAEQELADYRQWRQRE 51 (152)
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888875 7788999999999999999999999999999999876653
No 102
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.79 E-value=3.7e+02 Score=33.14 Aligned_cols=31 Identities=6% Similarity=0.050 Sum_probs=16.8
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
++++++..++..+..-+.+++.++.++..++
T Consensus 935 ~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 935 AALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544
No 103
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=43.75 E-value=49 Score=28.19 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=29.0
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
.+||+.|++++...+..+..++..+..+...|++..
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888888888888888888888888777653
No 104
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=43.42 E-value=3.5e+02 Score=27.01 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=25.6
Q ss_pred HHhhHHHHHHHHH-HHhhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 010974 18 ILNTAKEAAARIM-VSERKTIRYQQELFAAKEDALRMLLRLKQ 59 (496)
Q Consensus 18 ilntaKEaAaRvm-~aErka~~~~qel~~~Keeal~~LlRLK~ 59 (496)
-|..-|+.+.|++ ++|-+|.+++.+|..+..+--.+--|-++
T Consensus 109 ~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q 151 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQ 151 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666654 46777888888887776665444444433
No 105
>PRK11637 AmiB activator; Provisional
Probab=43.36 E-value=4.2e+02 Score=27.92 Aligned_cols=75 Identities=24% Similarity=0.275 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 40 QQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 40 ~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
.+++...=.++..-|...++-++.+..+.+...-.++.+-.+|+++..+.+..+..|+.+++....+|.++...+
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~ 242 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANE 242 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555566666666666666666666666777777777777777777777777666666665544
No 106
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=43.25 E-value=4e+02 Score=28.29 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH-------HH-HHhhhHHHHHHhhhhHHHHH
Q 010974 35 KTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVS-------LC-QQRKIDELEAQLGEAEDIVK 94 (496)
Q Consensus 35 ka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~s-------l~-~qrki~ELeaqL~eaed~v~ 94 (496)
+...++++-...++++-.++-+|+..+++|. +.|... |+ ...||.+|+.+|..|+....
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K~-~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAKE-EHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Confidence 3345555666667777788888888887764 223222 22 23456666665555544333
No 107
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=43.19 E-value=3.7e+02 Score=27.39 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 46 AKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGE-------AEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 46 ~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~e-------aed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
.=++++..|-.|.+.....+.+++...-.+.+..+.+-++.+. .......||.++.+.+.-|+++.+.-.
T Consensus 74 ~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~ 150 (342)
T cd08915 74 NIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDN 150 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4456777777888888888887777777777777778888776 667788999999999999999887653
No 108
>PRK04654 sec-independent translocase; Provisional
Probab=43.09 E-value=1.7e+02 Score=29.57 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=38.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 53 MLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 53 ~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
++-++|.++..-..|.+ +.-+++||...|++.++-|.+++.+|+....+|++.....
T Consensus 35 ~irk~R~~~~~vk~El~-----~El~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~ 91 (214)
T PRK04654 35 WVRRARMQWDSVKQELE-----RELEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARAL 91 (214)
T ss_pred HHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555544333322 2234578888888888889999999999999999766653
No 109
>PRK14011 prefoldin subunit alpha; Provisional
Probab=42.89 E-value=49 Score=30.92 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=31.2
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
=.+||++|++.+...+..+.+++.++++++.+|++-
T Consensus 93 ~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k 128 (144)
T PRK14011 93 FKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKR 128 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999888765
No 110
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.65 E-value=6e+02 Score=30.96 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=16.0
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
.++.++++++.+.+..+.++..+++..+.+...
T Consensus 312 ~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~ 344 (1311)
T TIGR00606 312 RTVREKERELVDCQRELEKLNKERRLLNQEKTE 344 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444444433
No 111
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.04 E-value=2.2e+02 Score=28.93 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHH
Q 010974 49 DALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLR 101 (496)
Q Consensus 49 eal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr 101 (496)
++|+.+||++.-.-...-++.=.....+.++..|++++.++++.|...-.+++
T Consensus 146 ~slk~vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~ve~f~~~~~ 198 (240)
T cd07667 146 ESMKNVLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRVECFNADLK 198 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999876544433222222234677899999999999998855444443
No 112
>PRK14154 heat shock protein GrpE; Provisional
Probab=42.04 E-value=56 Score=32.45 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=25.3
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
.|++|+++|.+++..+.+|+..+.|+.++.|..|+--.+
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666667777777777777766665443
No 113
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=41.90 E-value=1.9e+02 Score=25.88 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHH----HHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 44 FAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDEL----EAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 44 ~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~EL----eaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
+.|=+||++|++||..= -...+|..+.-||=++|- ++-+...+|+|...-.|...+..+|
T Consensus 30 AsAA~EAMaMI~RLQ~E----KAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~l~~rE~e~~~Le~el 93 (94)
T PF04576_consen 30 ASAASEAMAMILRLQEE----KAAVEMEARQYQRMAEEKAEYDQEAIESLKDILYKREKEIQSLEAEL 93 (94)
T ss_pred HHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35678999999999642 233344444444433332 2234444555555555555444443
No 114
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.78 E-value=92 Score=25.90 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=30.7
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
..||.+||.+|--.||+|.+|-..+-+-+.++..++..
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~ 44 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDH 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999888877777666666544
No 115
>PRK02119 hypothetical protein; Provisional
Probab=41.77 E-value=82 Score=26.30 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=30.2
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.||.+||.+|--.||+|.+|-..+-+-+.++..++..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~q 45 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQ 45 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999988888777777666666644
No 116
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=41.68 E-value=2.5e+02 Score=24.85 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHH
Q 010974 20 NTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRAD 99 (496)
Q Consensus 20 ntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~E 99 (496)
.+.+|.-.|| ||=|.-++..--+=-+.=+.|| |..++++ =+.+|++|+.|+..+.+-|..|+.+
T Consensus 8 ~~~~ev~~~v---e~vA~eLh~~YssKHE~KV~~L---KksYe~r----------wek~v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 8 ESQKEVEKAV---EKVARELHALYSSKHETKVKAL---KKSYEAR----------WEKKVDELENENKALKRENEQLKKK 71 (87)
T ss_pred hhHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHH---HhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444 4444444443333334445554 6555554 4578889999888888888888887
Q ss_pred HHHHHHHHHH
Q 010974 100 LREAQDELER 109 (496)
Q Consensus 100 Lr~~~~eLEk 109 (496)
|...+.|=.+
T Consensus 72 l~~e~~Ek~~ 81 (87)
T PF12709_consen 72 LDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHH
Confidence 7666655433
No 117
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.14 E-value=5.7e+02 Score=29.77 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=12.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 010974 80 DELEAQLGEAEDIVKDLRADLREAQDELE 108 (496)
Q Consensus 80 ~ELeaqL~eaed~v~~Lr~ELr~~~~eLE 108 (496)
+.++.-..+|+.++...+.|.++.-.+|.
T Consensus 566 ~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 566 KLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555544444433333
No 118
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.13 E-value=3e+02 Score=29.69 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=18.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 82 LEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 82 LeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
+.+|+.++...+.+|..+|+..+.+|++++...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555544
No 119
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=40.85 E-value=2.7e+02 Score=24.93 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 50 ALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 50 al~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
+..-|+.....+++.+....+..-...+..+..++.-.+.++-|...+.+...++.+|+.++...
T Consensus 47 ~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r 111 (139)
T PF05615_consen 47 LYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVR 111 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777777777777778888888888888888888888888888776654
No 120
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=40.45 E-value=2.3e+02 Score=25.63 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 010974 4 SEKLMALKKAYADIILN-----TAKEAAARIMVSERKTIRYQQELFAAKEDA 50 (496)
Q Consensus 4 Sekl~ALkkAyadiiln-----taKEaAaRvm~aErka~~~~qel~~~Keea 50 (496)
..+...|.+|...|--| +-++.-..|.-.+++...+++||..|+..|
T Consensus 42 ~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G 93 (115)
T PF06476_consen 42 QHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKG 93 (115)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45667788888877654 446667777778888888888887777663
No 121
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=40.41 E-value=68 Score=28.75 Aligned_cols=38 Identities=34% Similarity=0.450 Sum_probs=33.1
Q ss_pred HHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 73 LCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 73 l~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
-.|-+.-=++-.+|++|.+.+...+.+|+.++.+||+-
T Consensus 56 Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~ 93 (97)
T PF15136_consen 56 YQQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERD 93 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677899999999999999999999999999973
No 122
>PRK00846 hypothetical protein; Provisional
Probab=40.35 E-value=72 Score=27.38 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=32.1
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
..+|.+||.+|--.+|+|..|-..+-+-+..+++++-.
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~q 49 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAEL 49 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999988888877777777655
No 123
>PRK14162 heat shock protein GrpE; Provisional
Probab=40.17 E-value=66 Score=31.50 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=22.2
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
..+++|++++.+++..+.+|+..+.|+++++|..|+.-.+
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555666666666666665555443
No 124
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=40.06 E-value=4e+02 Score=26.77 Aligned_cols=7 Identities=43% Similarity=0.714 Sum_probs=2.5
Q ss_pred hHHHHHH
Q 010974 79 IDELEAQ 85 (496)
Q Consensus 79 i~ELeaq 85 (496)
+.+++++
T Consensus 212 l~~~~~~ 218 (423)
T TIGR01843 212 LGRLEAE 218 (423)
T ss_pred HHHHHHH
Confidence 3333333
No 125
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.59 E-value=1.1e+02 Score=31.70 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=25.7
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
....+|||+.+.+.++-+.+|+.|+-++...+.++
T Consensus 155 ~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 155 LKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888888888877766555443
No 126
>PRK14140 heat shock protein GrpE; Provisional
Probab=39.54 E-value=57 Score=31.87 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=22.7
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
-|++|++++.+++.-+.+|+..+.|+.++++..|+--..
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~r 76 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQK 76 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555556666666666666666666655443
No 127
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.24 E-value=4.1e+02 Score=26.67 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHH--HHHHH-Hhh-------hHHHHHHhhhhHHHH
Q 010974 24 EAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQV--VSLCQ-QRK-------IDELEAQLGEAEDIV 93 (496)
Q Consensus 24 EaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~--~sl~~-qrk-------i~ELeaqL~eaed~v 93 (496)
++=..+.--|+.+..+.+++...+++. ..|--++..|+.=..|--. ..|.+ ..- |..++.+....++.|
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666778888888888888877 5566666666553332110 01111 112 334445556667778
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010974 94 KDLRADLREAQDELERATYN 113 (496)
Q Consensus 94 ~~Lr~ELr~~~~eLEk~r~~ 113 (496)
..|..|+..+.++...+|..
T Consensus 84 ~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 84 QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887
No 128
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.80 E-value=1.7e+02 Score=27.48 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=20.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 85 QLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 85 qL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
.....+.-|..|+.||..+..+++.++++-
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667778888888888888777653
No 129
>PRK02224 chromosome segregation protein; Provisional
Probab=38.78 E-value=5.2e+02 Score=29.41 Aligned_cols=12 Identities=33% Similarity=0.410 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 010974 92 IVKDLRADLREA 103 (496)
Q Consensus 92 ~v~~Lr~ELr~~ 103 (496)
-|.+|+.++..+
T Consensus 573 ~~~~~~~~~~~l 584 (880)
T PRK02224 573 EVAELNSKLAEL 584 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 130
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=38.05 E-value=3.7e+02 Score=26.80 Aligned_cols=100 Identities=25% Similarity=0.243 Sum_probs=62.3
Q ss_pred HHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hhhHHHHHHhhhhHHH
Q 010974 15 ADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQ--RKIDELEAQLGEAEDI 92 (496)
Q Consensus 15 adiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~q--rki~ELeaqL~eaed~ 92 (496)
|+=|++-|+.-|-|++... ..++|+...|.++-.-.-||+-.+.++..-+.-....++ .-.++.++++.+++..
T Consensus 101 a~~v~~~a~~~a~~~~~~a----~~~~e~e~~~~q~~~~~~rl~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (212)
T COG3599 101 AQRVFGKAQYKADRYLEDA----KIAQELEDLKRQAQVERQRLRSDIEAQLASAKQEDWDEILRSTVDEVEAANEEAERL 176 (212)
T ss_pred HHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhhhhHHHHHHHHHHhhc
Confidence 3344444555555544443 456677777777777777777666655433322222222 3467788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 93 VKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 93 v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
+..++++-.++.++.-..-+++.-.+
T Consensus 177 ~~~~~~~~e~~~~e~~~~~~~~l~e~ 202 (212)
T COG3599 177 ADAAQADADRLRDECDIYVDTKLAEL 202 (212)
T ss_pred ccccccchhhhhhhhHHHHHHHHHHH
Confidence 88888888888887777666655433
No 131
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=37.98 E-value=6.1e+02 Score=28.88 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=9.7
Q ss_pred ccCcchhhhhhhhhh
Q 010974 208 RNGCTQRIHAFERNI 222 (496)
Q Consensus 208 RNGcTQRIrAle~nl 222 (496)
|...|+||.-+=+|+
T Consensus 486 Rs~Yt~RIlEIv~NI 500 (594)
T PF05667_consen 486 RSAYTRRILEIVKNI 500 (594)
T ss_pred HHHHHHHHHHHHHhH
Confidence 556677777766654
No 132
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=37.38 E-value=3.3e+02 Score=25.93 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=30.8
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
-++-|++-+++|--|++-..++..||-+.++-|++++..-.+--
T Consensus 82 a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~e 125 (136)
T PF11570_consen 82 AQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKE 125 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 35678899999999999999999999999999999887765533
No 133
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.86 E-value=1e+02 Score=26.44 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=32.7
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
..||.|||-++-.-|++|..|-.-|-+-+-.+++++...
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~ql 45 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999888888888888888877654
No 134
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=36.80 E-value=4e+02 Score=33.18 Aligned_cols=93 Identities=27% Similarity=0.269 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHH
Q 010974 4 SEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELE 83 (496)
Q Consensus 4 Sekl~ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELe 83 (496)
-.|+.-|+++-++++-+.+|| |.-+ --||+-..+++++.-...|-=+. ||-+- .+++.|.+.-...+.---..+|
T Consensus 646 l~k~~el~r~~~e~~~~~ek~-~~e~-~~e~~lk~~q~~~eq~~~E~~~~--~L~~~-e~~~~e~~~~lseek~ar~k~e 720 (1317)
T KOG0612|consen 646 LLKVEELKRENQERISDSEKE-ALEI-KLERKLKMLQNELEQENAEHHRL--RLQDK-EAQMKEIESKLSEEKSAREKAE 720 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHhhH-HHHHHHHHHHhcccccHHHHHH
Confidence 345666999999999999998 3333 34788888888887666554443 55443 4555555533333333333444
Q ss_pred HHhhhhHHHHHHHHHHHH
Q 010974 84 AQLGEAEDIVKDLRADLR 101 (496)
Q Consensus 84 aqL~eaed~v~~Lr~ELr 101 (496)
+-+.+.+..+.-|+.-+.
T Consensus 721 ~~~~~i~~e~e~L~~d~~ 738 (1317)
T KOG0612|consen 721 NLLLEIEAELEYLSNDYK 738 (1317)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 444444444444444333
No 135
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=36.50 E-value=88 Score=29.62 Aligned_cols=43 Identities=30% Similarity=0.416 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 68 AQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 68 aE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
.+.......++|.+|++.+...+.-|.+|..+|+....-++.+
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555555555444444433
No 136
>PRK14160 heat shock protein GrpE; Provisional
Probab=36.01 E-value=1e+02 Score=30.75 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=32.7
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
.+..++.|++++..++.-+.+|+..+.|++++.+..|+.-.+..
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~ 102 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEK 102 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888888888888888888877655443
No 137
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=35.79 E-value=69 Score=28.26 Aligned_cols=34 Identities=6% Similarity=0.051 Sum_probs=26.3
Q ss_pred HHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 010974 72 SLCQQRKIDELEAQLGEAEDIVKDLRADLREAQD 105 (496)
Q Consensus 72 sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~ 105 (496)
-...+++++++++++...+....+|+.|+.+.++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455677888888888888888888888888765
No 138
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=35.67 E-value=4.3e+02 Score=30.80 Aligned_cols=97 Identities=22% Similarity=0.249 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHH-----HHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHhh
Q 010974 5 EKLMALKKAYADI-----ILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRML-LRLKQMLDAKVNEAQVVSLCQQRK 78 (496)
Q Consensus 5 ekl~ALkkAyadi-----ilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~L-lRLK~~~daki~EaE~~sl~~qrk 78 (496)
+.|.+|..||..| |.....+|.+.+| ....-+..||=+.| |||.|..- +.+-+ -+..
T Consensus 370 ~il~Gl~ia~~~iDevI~iIR~s~~~k~~L~----------~~f~ls~~QaeaIL~mrL~~L~~--le~~~-----i~~E 432 (735)
T TIGR01062 370 HILEGLRIAFLNIDEVIEIIREEDEPKTILM----------ERFKLSAIQAEAILNLRLRHLAK--LEEHA-----IIDE 432 (735)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcChhhHHHHH----------HhcCCCHHHHHHHHHhHHHHhhh--hHHHH-----HHHH
Confidence 5678899998765 2222233322222 12223445555544 56766532 11111 1234
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
.+||+++..+.+.++++-..=.+....||+..++.-..++
T Consensus 433 ~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~~~g~~R 472 (735)
T TIGR01062 433 QSELEKERAILEKILKSERELNQLVKKEIQADATKYGLAR 472 (735)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5677777777777888777777777888888877766554
No 139
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=35.67 E-value=5.6e+02 Score=27.18 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 88 EAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 88 eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.++.-+.+++.+|..++..|+.++..
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 140
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=35.32 E-value=3.7e+02 Score=25.74 Aligned_cols=52 Identities=27% Similarity=0.401 Sum_probs=36.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 54 LLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 54 LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+.-++..+..+-.|-+.-+-.+.+|++.+|+ ..|-|.+|+.||. .||+-+..
T Consensus 63 v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~----L~d~v~eLkeel~---~el~~l~~ 114 (146)
T PF05852_consen 63 VSSLETEISEKKKELSHLKKFDRKKVEDLEK----LTDRVEELKEELE---FELERLQS 114 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----HHHHHHHHHHHHH---HHHHHHhc
Confidence 3345556666777777766678888988887 7788888888875 45555443
No 141
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.16 E-value=87 Score=26.77 Aligned_cols=35 Identities=26% Similarity=0.534 Sum_probs=26.4
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
.+|++.|+.++...++.+..++.++..+...|+.+
T Consensus 93 ~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 93 KKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888877777777777777777777777654
No 142
>PRK12704 phosphodiesterase; Provisional
Probab=35.02 E-value=6.7e+02 Score=27.87 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=14.4
Q ss_pred CCCCCCCCceeecccCCCcccccccc
Q 010974 148 CLPDVQPDSVMASDVGNSTLNGTYEN 173 (496)
Q Consensus 148 ~~~~~~~~sv~~~~~k~~~l~~~~~~ 173 (496)
..+.....+|++...-+.-|-++--+
T Consensus 202 a~~~~~e~~~~~v~lp~d~mkgriig 227 (520)
T PRK12704 202 AADHVAETTVSVVNLPNDEMKGRIIG 227 (520)
T ss_pred cchhhhhhceeeeecCCchhhcceeC
Confidence 34444556666666665556555544
No 143
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=34.84 E-value=5.4e+02 Score=26.69 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=25.3
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
+..++.++.+|.+.+.-.+.|-.-+++.+.|||..++-+.
T Consensus 175 ~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 175 QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666777777776665543
No 144
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=34.26 E-value=1e+02 Score=28.17 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=17.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 80 DELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 80 ~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
..||.||..+.+-|..|+.|+++....||+..
T Consensus 30 ~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~ 61 (160)
T PF13094_consen 30 RALERQLAANLHQLELLQEEIEKEEAALERDY 61 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555443
No 145
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.20 E-value=8e+02 Score=29.79 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 010974 23 KEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLRE 102 (496)
Q Consensus 23 KEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~ 102 (496)
+..+.++...-+.-..++++|...+-+.....-++.+-...--.+.+-.--...+..++.+++..+..+-...++.+|..
T Consensus 245 r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~ 324 (1201)
T PF12128_consen 245 RPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLAR 324 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666555555555555544443222222222222333344444444555566666667777
Q ss_pred HHHHHHHHHHhhh
Q 010974 103 AQDELERATYNEK 115 (496)
Q Consensus 103 ~~~eLEk~r~~q~ 115 (496)
.+.+|+++.....
T Consensus 325 ~~~~L~~i~~~~~ 337 (1201)
T PF12128_consen 325 IKSELDEIEQQKK 337 (1201)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766665543
No 146
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.17 E-value=1.9e+02 Score=28.40 Aligned_cols=38 Identities=11% Similarity=0.351 Sum_probs=31.2
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
.+..||+..+..+++.+.+|+.|.++++.+|+.+++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888899999999999999998877664
No 147
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=33.95 E-value=6.7e+02 Score=28.61 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=20.0
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
-.++|.-||..+...-.=+..|+.+|.+++.+|++.+
T Consensus 160 ~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 160 LKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555544
No 148
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.91 E-value=95 Score=24.39 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=33.4
Q ss_pred HHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 74 CQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 74 ~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.....+..+.+|+...+.-+..|+.|...++.+++.++++
T Consensus 14 ~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~ 53 (80)
T PF04977_consen 14 SGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKND 53 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566788889999999999999999999999999988443
No 149
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=33.83 E-value=5e+02 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=12.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhHHH
Q 010974 13 AYADIILNTAKEAAARIMVSERKTI 37 (496)
Q Consensus 13 AyadiilntaKEaAaRvm~aErka~ 37 (496)
|.|+++.+...|...++--.+.+-.
T Consensus 136 aaAe~~~~~~~~~~~~l~~~~~~l~ 160 (319)
T PF02601_consen 136 AAAELIVPDRRELLQRLDELRQRLN 160 (319)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3455555555555555544444433
No 150
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=33.61 E-value=88 Score=26.41 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=24.9
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
..++.+|+++|..+++.++.++.++..+...++-
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467788888888888888888777777766653
No 151
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=33.54 E-value=6.9e+02 Score=27.55 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 87 GEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 87 ~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
...++.|..||.||.+.+.+|..++...
T Consensus 305 ~~L~~~vesL~~ELe~~K~el~~lke~e 332 (522)
T PF05701_consen 305 SSLRASVESLRSELEKEKEELERLKERE 332 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777666554
No 152
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=33.48 E-value=5.2e+02 Score=30.02 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=30.9
Q ss_pred hHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 46 AKEDALRML-LRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 46 ~Keeal~~L-lRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
+..+|=+.| |||.++.--.+.+.+..--..+.+|++|+.-|..-+.+..-+..||++.+...-.
T Consensus 419 ~~~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kfg~ 483 (742)
T PRK05561 419 SEIQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFGD 483 (742)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 344443333 5677665544444443333444455555555544444444445555444444433
No 153
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=33.17 E-value=5.2e+02 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=8.7
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLR 101 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr 101 (496)
+.++++++..++.-+..++.++.
T Consensus 205 ~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 205 RAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 154
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=32.58 E-value=5e+02 Score=30.92 Aligned_cols=97 Identities=23% Similarity=0.305 Sum_probs=53.7
Q ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHhhHHHHHHHHHHH-------hHHHHHHHHHH-H----HhhhhhHHHHHHHHH-
Q 010974 7 LMALKKAYAD-IILNTAKEAAARIMVSERKTIRYQQELFA-------AKEDALRMLLR-L----KQMLDAKVNEAQVVS- 72 (496)
Q Consensus 7 l~ALkkAyad-iilntaKEaAaRvm~aErka~~~~qel~~-------~Keeal~~LlR-L----K~~~daki~EaE~~s- 72 (496)
+.+++.+-+. -|...+-|+--||-..|||...+-.|--+ .|++--..|++ + -.||-.-..|-|..|
T Consensus 388 ~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK 467 (961)
T KOG4673|consen 388 TEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSK 467 (961)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444443332 35566778888999999998765544433 34554555666 2 234444444555443
Q ss_pred --HHHHhhhHHHHHHhhhhHH-------HHHHHHHHHHHH
Q 010974 73 --LCQQRKIDELEAQLGEAED-------IVKDLRADLREA 103 (496)
Q Consensus 73 --l~~qrki~ELeaqL~eaed-------~v~~Lr~ELr~~ 103 (496)
|.|-.-|.-|-||..+++. .|..|+.|+.++
T Consensus 468 ~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~l 507 (961)
T KOG4673|consen 468 KQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKL 507 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHH
Confidence 3444556666666666663 344445554443
No 155
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=32.39 E-value=24 Score=31.82 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=17.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
.+++++++|..++..+.+|+..+.+...+++.++...
T Consensus 12 ~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~ 48 (165)
T PF01025_consen 12 EIEELEEELEELEKEIEELKERLLRLQAEFENYRKRL 48 (165)
T ss_dssp HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444445555555444443
No 156
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.31 E-value=1e+02 Score=26.95 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 64 KVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 64 ki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
.+.||.. -=.+||+.|+.++.+.++.+..|+.++..+...|...
T Consensus 84 ~~~eA~~---~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 84 DLEEAIE---FLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred cHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445542 2357888999988888888888888888887777653
No 157
>PRK14158 heat shock protein GrpE; Provisional
Probab=32.25 E-value=1.1e+02 Score=30.14 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=25.9
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQL 117 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~ 117 (496)
..+.+|+++|.+++.-+.+|+..+.|++.+.|..|+.-.+.
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE 80 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKE 80 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666777777777666655433
No 158
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.12 E-value=4.3e+02 Score=29.48 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=11.4
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
+|.+++++++..+..+..|..++.....++
T Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 436 ELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 159
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.10 E-value=3.2e+02 Score=30.48 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 010974 96 LRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 96 Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
|..++..+..+++..+....+..
T Consensus 267 Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 267 LERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444443333
No 160
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=32.02 E-value=15 Score=42.34 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHH
Q 010974 21 TAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQ 69 (496)
Q Consensus 21 taKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE 69 (496)
.-.++...+.++||++..++.||.-+. .++.++.|.+...++...|+.
T Consensus 596 ~~~~~~~~~~~~e~r~~~l~~elee~~-~~~~~a~r~rk~aE~el~e~~ 643 (859)
T PF01576_consen 596 AREELREQLAVSERRLRALQAELEELR-EALEQAERARKQAESELDELQ 643 (859)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999999987 678999999999988877765
No 161
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=32.00 E-value=5.5e+02 Score=25.92 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 010974 97 RADLREAQDELERATY 112 (496)
Q Consensus 97 r~ELr~~~~eLEk~r~ 112 (496)
+..+..++.+|+.++.
T Consensus 189 ~a~~~~~~a~l~~a~~ 204 (346)
T PRK10476 189 VAQRAAREAALAIAEL 204 (346)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555555443
No 162
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=31.92 E-value=3.3e+02 Score=26.97 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=17.3
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
+.|..+++++..++..+..++.+|..++.+++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~ 124 (327)
T TIGR02971 90 RAAAKLFKDVAAQQATLNRLEAELETAQREVDRYR 124 (327)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555544443
No 163
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=31.84 E-value=1.7e+02 Score=28.12 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=17.6
Q ss_pred HHHHHHhhhHHHHHHhhhhHHHHHH
Q 010974 71 VSLCQQRKIDELEAQLGEAEDIVKD 95 (496)
Q Consensus 71 ~sl~~qrki~ELeaqL~eaed~v~~ 95 (496)
+.|.|+|.|+|+=++|+-.|.-|+.
T Consensus 119 qll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777666654
No 164
>PRK14150 heat shock protein GrpE; Provisional
Probab=31.82 E-value=1.1e+02 Score=29.79 Aligned_cols=39 Identities=36% Similarity=0.429 Sum_probs=27.4
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQL 117 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~ 117 (496)
+.+|++|+++|.+++. +|+..+.|++.+.|..|+.-.+.
T Consensus 40 ~~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE 78 (193)
T PRK14150 40 DARIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQD 78 (193)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888887765 66777777777777777665443
No 165
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=31.77 E-value=6.6e+02 Score=26.79 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=64.7
Q ss_pred HHHhhHHHHHHHHHHHhHHH------HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 010974 30 MVSERKTIRYQQELFAAKED------ALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREA 103 (496)
Q Consensus 30 m~aErka~~~~qel~~~Kee------al~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~ 103 (496)
--||+|+-.++-+|.-+++. +|-.+=|=..-.-.+++|.|-....++.|+..--++-.-.|.-+..|+.|=-++
T Consensus 154 skaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LL 233 (305)
T PF14915_consen 154 SKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLL 233 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999988764 233333444445678888888888888888888777777788888888888888
Q ss_pred HHHHHHHHHh
Q 010974 104 QDELERATYN 113 (496)
Q Consensus 104 ~~eLEk~r~~ 113 (496)
+-.|+-+.+.
T Consensus 234 rQQLddA~~K 243 (305)
T PF14915_consen 234 RQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 166
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.76 E-value=4.2e+02 Score=24.52 Aligned_cols=95 Identities=29% Similarity=0.323 Sum_probs=59.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhH-------H---HHHHHHHHHHhhhhh---HHHHHHHHHHHHHhh
Q 010974 12 KAYADIILNTAKEAAARIMVSERKTIRYQQELFAAK-------E---DALRMLLRLKQMLDA---KVNEAQVVSLCQQRK 78 (496)
Q Consensus 12 kAyadiilntaKEaAaRvm~aErka~~~~qel~~~K-------e---eal~~LlRLK~~~da---ki~EaE~~sl~~qrk 78 (496)
++=+|-....+-++-+.|=..|-+...+++++.+.. + .+-.-|-.+|+.++. ....+| .-+||
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l~rr 81 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QLNRR 81 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HHHhh
Confidence 455676777777777777777776666666655432 1 111122222322222 122233 56799
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
|+-||.+|..|+..+.....-|+.+.-..+.+
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~ 113 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHF 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999888888766555544
No 167
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.58 E-value=62 Score=29.78 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=16.1
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQ 104 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~ 104 (496)
|.+|.+||.+.+.-+..|+.||+.+.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666665544
No 168
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=31.47 E-value=5.7e+02 Score=29.12 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 34 RKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNE---AQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 34 rka~~~~qel~~~Keeal~~LlRLK~~~daki~E---aE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
|.-+.|+.++-..++|- =-||++++.+.++ ++..-.....++.+|||+++-+.--++.|..|+.+++.|...+
T Consensus 106 ~~ra~~e~ei~kl~~e~----~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 106 RERAKLEIEITKLREEL----KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45566677776666652 2344555544333 2333344566788888888887766666666666666665555
Q ss_pred HHhhh
Q 010974 111 TYNEK 115 (496)
Q Consensus 111 r~~q~ 115 (496)
+....
T Consensus 182 ~~~l~ 186 (546)
T KOG0977|consen 182 REELA 186 (546)
T ss_pred HHHHH
Confidence 55543
No 169
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=31.32 E-value=8.1e+02 Score=27.68 Aligned_cols=71 Identities=15% Similarity=0.060 Sum_probs=40.5
Q ss_pred HHHHhHHHHHHHHHHHHh-hhhhHHHHH-----HHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 42 ELFAAKEDALRMLLRLKQ-MLDAKVNEA-----QVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 42 el~~~Keeal~~LlRLK~-~~daki~Ea-----E~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+|.+.|+..--.+.-.++ --+..+.|+ |......|.|+++++.||.+-+++=.-|+..+.--.+.|+++.-
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e 424 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEE 424 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666665555555554 233333333 33344456677777777777777666666666655555555433
No 170
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.20 E-value=2.7e+02 Score=28.01 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=50.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 010974 37 IRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELE 108 (496)
Q Consensus 37 ~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLE 108 (496)
..+=++...+|||||+..--+- +--.+...+.|+...+|.+..|.+|.+.|..|+..|....+-+=
T Consensus 9 ~~~L~e~d~~REE~l~lsRei~------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ 74 (204)
T COG2178 9 REVLQEKDKAREEALKLSREIV------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYF 74 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3455788999999997654332 12245577889999999999999999999999988877665544
No 171
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.14 E-value=1.4e+02 Score=29.20 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 64 KVNEAQVVSLCQQRKIDELEAQLGEAE--DIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 64 ki~EaE~~sl~~qrki~ELeaqL~eae--d~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
+..+.|...-..+...+.|.+-|..|. +-+-.+..||.+++++||.++..+.
T Consensus 133 ~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~ 186 (262)
T PF14257_consen 133 QYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLK 186 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444444555555666555554 1244788999999999999887654
No 172
>PRK14143 heat shock protein GrpE; Provisional
Probab=30.62 E-value=1.1e+02 Score=30.80 Aligned_cols=42 Identities=10% Similarity=0.215 Sum_probs=27.0
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
..+.+|+++|.+++..+.+|+..+.|++.+.|..|+...+..
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~ 108 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQ 108 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666777777777777777766654433
No 173
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.58 E-value=6e+02 Score=25.94 Aligned_cols=97 Identities=21% Similarity=0.199 Sum_probs=48.8
Q ss_pred HHhhHHHHHHHHHHHhhHHHHHHHHHHHhH-HHHHHHHHHHHhhhhhHHHHHHHHHH--------------HHHhhhHHH
Q 010974 18 ILNTAKEAAARIMVSERKTIRYQQELFAAK-EDALRMLLRLKQMLDAKVNEAQVVSL--------------CQQRKIDEL 82 (496)
Q Consensus 18 ilntaKEaAaRvm~aErka~~~~qel~~~K-eeal~~LlRLK~~~daki~EaE~~sl--------------~~qrki~EL 82 (496)
+-.-..++-.++..+|++-..|+.+.-..- ++...++..+=.-+..++.++|.+.- ..+.+|+.|
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l 254 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSL 254 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH
Confidence 334445556666666666666666432211 11122333334444455555443321 124567777
Q ss_pred HHHhhhhHHH--------HHHHHHHHHHHHHHHHHHHHhh
Q 010974 83 EAQLGEAEDI--------VKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 83 eaqL~eaed~--------v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
++||...... +.++..|+.++.-+++-++...
T Consensus 255 ~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y 294 (362)
T TIGR01010 255 RKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQL 294 (362)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777654432 2445556666666665555443
No 174
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.15 E-value=1.3e+02 Score=33.37 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=17.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 82 LEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 82 LeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
+.+++.+.|..|.+|..|+++++..++-+.
T Consensus 95 ~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 95 LNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 335555566666666666666666664333
No 175
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=29.99 E-value=2.8e+02 Score=25.20 Aligned_cols=56 Identities=32% Similarity=0.430 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHH
Q 010974 46 AKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDI--VKDLRADLREAQDELER 109 (496)
Q Consensus 46 ~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~--v~~Lr~ELr~~~~eLEk 109 (496)
|-+||=++|-.|+.+++.- ...++.+.++++.|+++.+. +..++.+++....++..
T Consensus 4 Tl~EA~~lLP~l~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (120)
T PF09969_consen 4 TLEEANALLPLLRPILEEI--------RELKAELEELEERLQELEDSLEVNGLEAELEELEARLRE 61 (120)
T ss_pred CHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 4578888888888877532 34556777777777776664 34555555555554444
No 176
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.93 E-value=1.4e+02 Score=22.98 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=19.6
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQD 105 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~ 105 (496)
+..+++|+.++...+.-...|+.++..+..
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677777777777677777666665543
No 177
>PRK14139 heat shock protein GrpE; Provisional
Probab=29.85 E-value=1.2e+02 Score=29.68 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=14.6
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~EL 100 (496)
+|++|++++.+.+|....+++|.
T Consensus 40 ~l~~le~e~~elkd~~lR~~Aef 62 (185)
T PRK14139 40 ELAEAEAKAAELQDSFLRAKAET 62 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667776666666666666555
No 178
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=29.76 E-value=3.5e+02 Score=24.10 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=28.1
Q ss_pred HHHHHhhHHHHHHHHHHH-h-----hHHHHHHHHHHHhHHHHHHHHHHHH
Q 010974 15 ADIILNTAKEAAARIMVS-E-----RKTIRYQQELFAAKEDALRMLLRLK 58 (496)
Q Consensus 15 adiilntaKEaAaRvm~a-E-----rka~~~~qel~~~Keeal~~LlRLK 58 (496)
|+-||..|++-|.+++.. + .++..|++++....+++...+..+.
T Consensus 15 A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~ 64 (166)
T TIGR02499 15 AQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQ 64 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665542 1 2456788888888888877776543
No 179
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.71 E-value=1.4e+02 Score=26.58 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=23.6
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
.++|+.|+.++...+..+..++.++...+..|+.+..
T Consensus 100 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 100 DKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667776666666666666666666666665543
No 180
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=29.61 E-value=4.2e+02 Score=30.34 Aligned_cols=37 Identities=30% Similarity=0.298 Sum_probs=32.1
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
.-++|+|.++|.||.-+++-.+|-+++.||.++|+.-
T Consensus 269 a~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~ 305 (596)
T KOG4360|consen 269 AQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCD 305 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3467889999999999999999999999999998764
No 181
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=29.57 E-value=4.4e+02 Score=29.13 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=21.8
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
++++++++..+..+.|..||.+-.+++..|++++...
T Consensus 391 ~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 391 QLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666666666666666553
No 182
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=29.57 E-value=1.7e+02 Score=26.88 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhh
Q 010974 46 AKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLG 87 (496)
Q Consensus 46 ~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~ 87 (496)
+.|||=+.+=-|.+-..-.-.+.|-. .+|+|+++...+.
T Consensus 40 n~eEak~~vddl~~q~k~~~~e~e~K---~~r~i~~ml~~~~ 78 (108)
T COG3937 40 NAEEAKRFVDDLLRQAKEAQGELEEK---IPRKIEEMLSDLE 78 (108)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhHHHh---hhHHHHHHHhhcc
Confidence 45566555444433333333333322 5556665555544
No 183
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=29.56 E-value=61 Score=29.34 Aligned_cols=80 Identities=29% Similarity=0.331 Sum_probs=16.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh---hHHHHHHhhh
Q 010974 12 KAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRK---IDELEAQLGE 88 (496)
Q Consensus 12 kAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrk---i~ELeaqL~e 88 (496)
||.|-|+++|-+||++-|+--+ +.|.++ +.--||+.+-.- |.++..| +|-+ ++..|+ .
T Consensus 1 k~~a~vse~tkQE~v~~~~r~~------qEEvAS-------Lq~i~k~tv~~y--e~~~~~L-eqEr~Q~~q~~e~---~ 61 (106)
T PF03528_consen 1 KMVATVSETTKQEAVIEVQRQW------QEEVAS-------LQAILKETVSEY--ETQWSLL-EQERLQWQQYRES---E 61 (106)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcchHHHHhhhHHHHHHHHhHH------HHHHHH-------HHHHHhhhhhhH--HHHHHHH-HHHHHHHHHHHHH---H
Confidence 6789999999999998776322 222221 111144444111 5555552 3322 233333 2
Q ss_pred hHHHHHHHHHHHHHHH--HHHHHHH
Q 010974 89 AEDIVKDLRADLREAQ--DELERAT 111 (496)
Q Consensus 89 aed~v~~Lr~ELr~~~--~eLEk~r 111 (496)
..+ |++|+.-|++.+ +.||+.-
T Consensus 62 ~Re-v~~L~~~L~~~~~~e~LE~~M 85 (106)
T PF03528_consen 62 ERE-VAKLQRRLREGQELENLEKSM 85 (106)
T ss_dssp HHH-HHHHHHHHHHHH--HHHHHHH
T ss_pred HHH-HHHhcccccccchHHHHHHHH
Confidence 223 889999999999 7777643
No 184
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=29.30 E-value=1.7e+02 Score=31.14 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=31.8
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
+++++.|+.|....++....++.|+++.+.||++++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35678888888888888899999999999999988544
No 185
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.29 E-value=69 Score=32.86 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010974 67 EAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQL 117 (496)
Q Consensus 67 EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~ 117 (496)
+-|...-.+...|.+||.||...++.|.+|+- +.+.+...+++...|.+.
T Consensus 46 ~~~~~~~~~~~~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~ 95 (262)
T COG1729 46 PLERVQNAHSYRLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEEN 95 (262)
T ss_pred ccccccchhhhccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 33556667778999999999999999999997 777776666666666543
No 186
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.29 E-value=3e+02 Score=25.50 Aligned_cols=21 Identities=29% Similarity=0.120 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 010974 24 EAAARIMVSERKTIRYQQELF 44 (496)
Q Consensus 24 EaAaRvm~aErka~~~~qel~ 44 (496)
.|-+|+-.+|-+...+++++.
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~ 31 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENE 31 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555655555555544
No 187
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=29.24 E-value=1e+02 Score=26.79 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=28.2
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
=.++|+.|+.++...+..+..|+.++......|++
T Consensus 91 l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 91 LKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35788888888888888888888888888877764
No 188
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=29.16 E-value=3.8e+02 Score=24.01 Aligned_cols=61 Identities=21% Similarity=0.389 Sum_probs=51.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 53 MLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 53 ~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
.+.|.+|++--++.=+|.+. .-...++++.++...+..+..|...++..-+-...+...+.
T Consensus 4 ~~~R~~q~~~~k~g~~~~t~--~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 64 (229)
T PF03114_consen 4 KINRAKQRVKQKLGKSEKTE--IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQK 64 (229)
T ss_dssp HHHHHHHHHHHHHTSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 36799999999998888776 33458999999999999999999999998888888877765
No 189
>PF15456 Uds1: Up-regulated During Septation
Probab=29.12 E-value=2.6e+02 Score=25.69 Aligned_cols=82 Identities=27% Similarity=0.266 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHhh
Q 010974 6 KLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLD-------AKVNEAQVVSLCQQRK 78 (496)
Q Consensus 6 kl~ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~d-------aki~EaE~~sl~~qrk 78 (496)
....|||-+.- |..=-+++-|=++.|+|- -+|...|.||--.-- .-+.++|-....-.+|
T Consensus 23 EVe~LKkEl~~--L~~R~~~lr~kl~le~k~-----------RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk 89 (124)
T PF15456_consen 23 EVEELKKELRS--LDSRLEYLRRKLALESKI-----------RDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRK 89 (124)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhh
Confidence 34667765542 333334444444444443 245566666632221 2355566666667789
Q ss_pred hHHHHHHhhhhHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~EL 100 (496)
|+|+..+|-.+|+-..++|.-|
T Consensus 90 ~ee~~~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 90 CEELAQELWKLENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888877776544
No 190
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.07 E-value=9.3e+02 Score=27.68 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=25.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 85 QLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 85 qL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
.+.-++..|.++++++++..+.|+++|+.-
T Consensus 140 ~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w 169 (611)
T KOG2398|consen 140 ELAKAELKIKEAREEYRSLVAKLEKVRKDW 169 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678899999999999999999998764
No 191
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=28.84 E-value=5.6e+02 Score=25.02 Aligned_cols=85 Identities=25% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhh-----------HHHHHHHHHHHHHhhhHHHHHHhhhhHH----
Q 010974 27 ARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDA-----------KVNEAQVVSLCQQRKIDELEAQLGEAED---- 91 (496)
Q Consensus 27 aRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~da-----------ki~EaE~~sl~~qrki~ELeaqL~eaed---- 91 (496)
.++...||+-.-...+|..++++-=+ |+++.+. ++..++..--..-++|.+|+.||.-+.+
T Consensus 82 ~~~r~~~~klk~~~~el~k~~~~l~~----L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r 157 (194)
T PF15619_consen 82 EQERELERKLKDKDEELLKTKDELKH----LKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR 157 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 92 -------IVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 92 -------~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
.+.+++.++..+..|++.++....
T Consensus 158 ql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 158 QLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 192
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.66 E-value=4.3e+02 Score=23.69 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=27.5
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
...|..|.+++..++..|..|+.++..++..|+.....
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEAS 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677778888888888888887777777765544
No 193
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=28.60 E-value=9.3e+02 Score=27.81 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 64 KVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 64 ki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
.-.|++...-.++++|.++...+.+-|++|+.|=..=--+...|++
T Consensus 383 ~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q 428 (632)
T PF14817_consen 383 ERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQ 428 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 3456666677889999999999999999999875544444444443
No 194
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=28.49 E-value=6e+02 Score=28.02 Aligned_cols=90 Identities=27% Similarity=0.302 Sum_probs=55.6
Q ss_pred CCchHHHHHHHHHHHHHHHhhHHHHH-------------------HHHHHHhhH-HHHHHHHHHHhHHHHHHHHHHHHh-
Q 010974 1 MSDSEKLMALKKAYADIILNTAKEAA-------------------ARIMVSERK-TIRYQQELFAAKEDALRMLLRLKQ- 59 (496)
Q Consensus 1 MadSekl~ALkkAyadiilntaKEaA-------------------aRvm~aErk-a~~~~qel~~~Keeal~~LlRLK~- 59 (496)
|++.++.-.|+||.-|+=.|+.+--| .+|-+-||+ +..++..-...|++-|-+++|.-.
T Consensus 209 I~~~qR~~el~Ka~~dveV~~~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~pae 288 (428)
T KOG2668|consen 209 IASAQRTKELIKAATDVEVNTNKAEADLAYELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAE 288 (428)
T ss_pred HHHhhhhHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhH
Confidence 45677778899998888888754211 245566664 444444445678888888888753
Q ss_pred ---hhhhHHHHHHHHHHHHH--------hhhHHHHHHhhhhH
Q 010974 60 ---MLDAKVNEAQVVSLCQQ--------RKIDELEAQLGEAE 90 (496)
Q Consensus 60 ---~~daki~EaE~~sl~~q--------rki~ELeaqL~eae 90 (496)
...-++.||+......| ||+.|.||+--+|-
T Consensus 289 Ae~~r~~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~ 330 (428)
T KOG2668|consen 289 AEVERETKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEAD 330 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 22336777776655544 45555565544443
No 195
>PRK14148 heat shock protein GrpE; Provisional
Probab=28.32 E-value=1.4e+02 Score=29.35 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=21.7
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
+++|++++.+++.-+.+|+..+.|++++.|..|+.-.
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555556666666666666666665543
No 196
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=28.24 E-value=6.4e+02 Score=25.49 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=43.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhH
Q 010974 12 KAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKED-ALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAE 90 (496)
Q Consensus 12 kAyadiilntaKEaAaRvm~aErka~~~~qel~~~Kee-al~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eae 90 (496)
.-|.++|-.+..+.--||-.+.+|...-+.+.....+. ...-|--|-.-|...+.+|| .|-.+-+|+|.++.+.+++
T Consensus 82 ~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE--~LGeeG~VdeA~~~~~~~e 159 (254)
T PF03194_consen 82 REFLRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAE--ELGEEGDVDEAQKLMEEVE 159 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHH
Confidence 44566666666676677776666666555544333222 23344444555555555555 5666667777666555443
No 197
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=28.18 E-value=6.1e+02 Score=28.59 Aligned_cols=89 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHH
Q 010974 18 ILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLR--LKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKD 95 (496)
Q Consensus 18 ilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlR--LK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~ 95 (496)
+-|-.|+|||+|+--=-----+.+.+----...||.--| |.++..++-.--|..-|.+| ..==-++..++.++-|
T Consensus 358 LTk~~KnAAA~VLqeTW~i~K~trl~~k~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~---~nsl~d~aK~~~~myd 434 (489)
T KOG3684|consen 358 LTKEHKNAAANVLQETWLIYKHTKLVSKGDQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQ---ANSLVDLAKTQNDMYD 434 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 010974 96 LRADLREAQDELER 109 (496)
Q Consensus 96 Lr~ELr~~~~eLEk 109 (496)
+-.+|...+++||+
T Consensus 435 ~~~~l~~~q~~le~ 448 (489)
T KOG3684|consen 435 LLQELHSRQEELEK 448 (489)
T ss_pred HHHHHHHHHHHHHH
No 198
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.12 E-value=7.6e+02 Score=26.32 Aligned_cols=7 Identities=29% Similarity=0.430 Sum_probs=2.5
Q ss_pred hHHHHHH
Q 010974 34 RKTIRYQ 40 (496)
Q Consensus 34 rka~~~~ 40 (496)
.....++
T Consensus 269 ~~l~~~~ 275 (562)
T PHA02562 269 SKIEQFQ 275 (562)
T ss_pred HHHHHHH
Confidence 3333333
No 199
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.08 E-value=5.7e+02 Score=24.91 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010974 93 VKDLRADLREAQDELERAT 111 (496)
Q Consensus 93 v~~Lr~ELr~~~~eLEk~r 111 (496)
|..|+.+....+.+++.++
T Consensus 161 i~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 161 ISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 200
>PRK14155 heat shock protein GrpE; Provisional
Probab=27.66 E-value=1e+02 Score=30.44 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=12.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~EL 100 (496)
+|++|++++.+.+|....+++|+
T Consensus 21 ~l~~le~e~~elkd~~lR~~Aef 43 (208)
T PRK14155 21 EIEALKAEVAALKDQALRYAAEA 43 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554444444
No 201
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.66 E-value=1.8e+02 Score=23.93 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=15.8
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
||++|..+++.....|..|..+..-++.+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555655555555555555544444444444
No 202
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.59 E-value=1e+02 Score=26.89 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=17.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Q 010974 80 DELEAQLGEAEDIVKDLRADLREAQ 104 (496)
Q Consensus 80 ~ELeaqL~eaed~v~~Lr~ELr~~~ 104 (496)
+.||++++.|=|+|.-||.|+.+.+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777788888887776654443
No 203
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=27.35 E-value=5.6e+02 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhHH
Q 010974 9 ALKKAYADIILNTAKEAAARIMVSERKT 36 (496)
Q Consensus 9 ALkkAyadiilntaKEaAaRvm~aErka 36 (496)
.+..||..|+-.|...|..+..+|+.=.
T Consensus 62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~ 89 (251)
T cd07653 62 SSVKAFRSILNEVNDIAGQHELIAENLN 89 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777666666666666665433
No 204
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.33 E-value=2e+02 Score=32.05 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=24.3
Q ss_pred HhhhHHHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 76 QRKIDELEAQLGEAE-------DIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 76 qrki~ELeaqL~eae-------d~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
|.|.+|||+||...+ -...+++..|+...+|+..++..+
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 336666666664433 455566666777777777776665
No 205
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.24 E-value=4.9e+02 Score=25.40 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhh
Q 010974 48 EDALRMLLRLKQM 60 (496)
Q Consensus 48 eeal~~LlRLK~~ 60 (496)
++.++.|-.|+..
T Consensus 83 ~~vI~fLq~l~~~ 95 (161)
T TIGR02894 83 QDVISFLQNLKTT 95 (161)
T ss_pred HHHHHHHHHHHhc
Confidence 5567777777654
No 206
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.22 E-value=4.6e+02 Score=32.05 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=21.6
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
..+.+.|+.+|+.-.--+.++..|++.++..|
T Consensus 482 ~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 482 KEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777776666777777777776664
No 207
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.14 E-value=8.3e+02 Score=27.84 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=8.3
Q ss_pred ccccccccCCCC
Q 010974 412 TDLEAVNLSPLN 423 (496)
Q Consensus 412 ~d~e~~n~~~~~ 423 (496)
-|+=++|.||+-
T Consensus 641 yD~IIIDtPP~~ 652 (726)
T PRK09841 641 YDLVIVDTPPML 652 (726)
T ss_pred CCEEEEeCCCcc
Confidence 467777877763
No 208
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=26.91 E-value=7.4e+02 Score=27.18 Aligned_cols=13 Identities=38% Similarity=0.217 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 010974 6 KLMALKKAYADII 18 (496)
Q Consensus 6 kl~ALkkAyadii 18 (496)
.+.++.+|+..|+
T Consensus 349 il~g~~~~i~~id 361 (445)
T cd00187 349 ILEGLLKAILNID 361 (445)
T ss_pred HHHhHHHHHHHHH
Confidence 3455555555443
No 209
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=26.87 E-value=3.3e+02 Score=27.55 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010974 92 IVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 92 ~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
-+..++.+|+.++.+|+.++..
T Consensus 130 ~~~~a~a~l~~a~a~l~~a~~~ 151 (310)
T PRK10559 130 VLQTVLHQLAKAQATRDLAKLD 151 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555443
No 210
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=26.85 E-value=9.9e+02 Score=27.25 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=9.2
Q ss_pred chHHHHHHHHHHHHHHH
Q 010974 3 DSEKLMALKKAYADIIL 19 (496)
Q Consensus 3 dSekl~ALkkAyadiil 19 (496)
|+++-+.+-.++|+.-+
T Consensus 238 dP~~Aa~ilN~la~~Yi 254 (726)
T PRK09841 238 DPQLITRILNSIANNYL 254 (726)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 56666555555555444
No 211
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.83 E-value=7e+02 Score=26.47 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=32.7
Q ss_pred HHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 010974 31 VSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQD 105 (496)
Q Consensus 31 ~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~ 105 (496)
.|=.+.+.+..||+.=.++..+.==-+-+ +=++|.+.+...-.---.-+||..+|+.+.++=..|.+||+..++
T Consensus 210 ~An~qia~LseELa~k~Ee~~rQQEEIt~-LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqd 283 (306)
T PF04849_consen 210 EANQQIASLSEELARKTEENRRQQEEITS-LLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQD 283 (306)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777776666553111111 012222222222222222344555555555555555555444443
No 212
>PRK10698 phage shock protein PspA; Provisional
Probab=26.82 E-value=6.2e+02 Score=24.92 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHH----HHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHH
Q 010974 7 LMALKKAYADIILNTAKEAAARIMVSERKTIRYQQE----LFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDEL 82 (496)
Q Consensus 7 l~ALkkAyadiilntaKEaAaRvm~aErka~~~~qe----l~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~EL 82 (496)
+..++++.|.+|-. .|....++--.+..+..++.- |..-.|+=-+--|.-|+-...++...+-..-.++.-++.|
T Consensus 40 l~~~r~alA~~~A~-~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L 118 (222)
T PRK10698 40 LVEVRSTSARALAE-KKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARM 118 (222)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888754 233333333333333333322 2222333333446678888899998888888888889999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 83 EAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 83 eaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
+.++...+..|.+++.....+-....-++..
T Consensus 119 ~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 119 KKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888776665555555444
No 213
>PRK03918 chromosome segregation protein; Provisional
Probab=26.65 E-value=9.8e+02 Score=27.13 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=17.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 82 LEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 82 LeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
++.++...+.-+..++.+|.....+|++++....
T Consensus 250 l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~ 283 (880)
T PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555665555443
No 214
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.46 E-value=9.7e+02 Score=27.04 Aligned_cols=147 Identities=24% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhh-----------------HHHHHH---------HHHHHhHHHHHHHHHHHHhh----
Q 010974 11 KKAYADIILNTAKEAAARIMVSER-----------------KTIRYQ---------QELFAAKEDALRMLLRLKQM---- 60 (496)
Q Consensus 11 kkAyadiilntaKEaAaRvm~aEr-----------------ka~~~~---------qel~~~Keeal~~LlRLK~~---- 60 (496)
.||.|.|-.||..||-+-|.-.++ -+.+.+ |+-.--++.-|..|++|---
T Consensus 57 ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~ 136 (542)
T KOG0993|consen 57 IKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQ 136 (542)
T ss_pred HHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q ss_pred ------hhhHHHHHHH---HHHHHHhhhHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhhcccCCC
Q 010974 61 ------LDAKVNEAQV---VSLCQQRKIDELEAQLGEAEDIVKDLR-------ADLREAQDELERATYNEKQLLDEQNST 124 (496)
Q Consensus 61 ------~daki~EaE~---~sl~~qrki~ELeaqL~eaed~v~~Lr-------~ELr~~~~eLEk~r~~q~q~l~~~~~~ 124 (496)
||-.-.++|+ ..+.--+.|.||-+.|-.||+.|..|. .+|-..-+.|+-+|..-.+..--+--.
T Consensus 137 ~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h~a~slh~~t~lL~L~RD~s~~l~~leel~ 216 (542)
T KOG0993|consen 137 LDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHHKAESLHVFTDLLNLARDKSEQLRQLEELD 216 (542)
T ss_pred hhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHhcCCchhhhHHHHhc
Q ss_pred CCccccccCccccccCcCCCCCCCCCC--CCCCcee
Q 010974 125 GDVATVMTPSLENRLNTSEAAMPCLPD--VQPDSVM 158 (496)
Q Consensus 125 ~~~~~~~~~s~en~~~~s~~~~~~~~~--~~~~sv~ 158 (496)
++.+|.--.+-.|. ++|.++..-.-+ .+.+|||
T Consensus 217 gd~gps~d~Fa~s~-d~s~slqs~tLGggvga~s~m 251 (542)
T KOG0993|consen 217 GDAGPSGDDFAQST-DTSGSLQSKTLGGGVGADSVM 251 (542)
T ss_pred cCCCCCcchhhhcc-ccccchhhhcccCCccccccC
No 215
>PRK14145 heat shock protein GrpE; Provisional
Probab=26.33 E-value=1.3e+02 Score=29.58 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=17.9
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
++.|+++|.+++.-+.+|+.-+.|+.++.|..|+--
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~ 82 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRT 82 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555443
No 216
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.25 E-value=1.4e+02 Score=28.39 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 64 KVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 64 ki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
.|.+.+..--.-+.+|..|+..|.+-+..+..|+.|+.-.+-++..+..
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~ 165 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEE 165 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445667777777777777777777766666665544433
No 217
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.24 E-value=6.7e+02 Score=25.08 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=13.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 84 AQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 84 aqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
+-|...+.-|.-|..=|+..+.||+++
T Consensus 167 ~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 167 EDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444555555555666554
No 218
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=26.11 E-value=6.1e+02 Score=24.58 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHH
Q 010974 22 AKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQ 69 (496)
Q Consensus 22 aKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE 69 (496)
.++|-.+++.|++.+..+..+ +..+|-..+-+-+.--+.++.+||
T Consensus 151 v~~a~~~~~~a~q~~~~~~~~---ae~~~~~~~~~a~~~a~~~~~~Ae 195 (261)
T TIGR01933 151 VKEAFDDVIIAREDEERYINE---AEAYANEVVPKARGDAQRIIEEAR 195 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777666544322 233444444444444444444554
No 219
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.09 E-value=1.1e+03 Score=27.53 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=17.5
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
|.+.++.-..+|++++..+|.|++..-.+|.+
T Consensus 559 ~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 559 ERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555666666666666655555543
No 220
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=26.07 E-value=1.3e+03 Score=28.50 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=22.0
Q ss_pred chhhhhhhhhhccCCCCCCchhhhh--hhcC
Q 010974 212 TQRIHAFERNILEGNLSLPGQVEQQ--IKNG 240 (496)
Q Consensus 212 TQRIrAle~nl~~g~ls~sg~~d~~--ikne 240 (496)
.|-+||++++-..+.-+|-|-.+.| ++++
T Consensus 478 ~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~ 508 (1074)
T KOG0250|consen 478 PQLLRAIERRKRRFQTPPKGPLGKYVTLKEP 508 (1074)
T ss_pred HHHHHHHHHHHhcCCCCCCCCccceeEecCc
Confidence 3567888888888888888888887 4444
No 221
>PTZ00121 MAEBL; Provisional
Probab=25.80 E-value=9.7e+02 Score=31.15 Aligned_cols=103 Identities=23% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhH
Q 010974 1 MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKID 80 (496)
Q Consensus 1 MadSekl~ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ 80 (496)
+++..+++++++| .--.+..++|.+--.|++..-.+.....|.|.++.+=-.++-++..-..-|-+.+.+.|+.+
T Consensus 1184 aEE~Rr~EElRra-----EEaRkaEEaRRlEE~RraEEARraEEErR~EE~RraEEaRK~aEEAkraEEeR~~EE~Rk~E 1258 (2084)
T PTZ00121 1184 AEEVRKAEELRKA-----EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE 1258 (2084)
T ss_pred HHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 81 ELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 81 ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
||+|.++-.--+..+.|..|.-.+|.++
T Consensus 1259 --ear~a~~A~r~aa~k~Ee~RrAee~~k~ 1286 (2084)
T PTZ00121 1259 --EARMAHFARRQAAIKAEEARKADELKKA 1286 (2084)
T ss_pred --HHHHHHHHHHhHhhhhHHHHHHHHHHHH
No 222
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=25.73 E-value=1.3e+02 Score=31.91 Aligned_cols=35 Identities=37% Similarity=0.503 Sum_probs=27.3
Q ss_pred HHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 010974 72 SLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDE 106 (496)
Q Consensus 72 sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~e 106 (496)
....|+||++|+++|++++.-+.-++..|+-++..
T Consensus 177 v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqek 211 (323)
T PF08537_consen 177 VILLQKKIDELEERLNDLEKELEITKKDLKFAQEK 211 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999998888877777777665543
No 223
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=25.60 E-value=2.2e+02 Score=24.73 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=15.7
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
.+|+.+|+.+...+.....|+..+...+..|..
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444444444444444444443
No 224
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.56 E-value=8.2e+02 Score=28.54 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 010974 89 AEDIVKDLR 97 (496)
Q Consensus 89 aed~v~~Lr 97 (496)
++.++++|+
T Consensus 581 ~~~~i~~lk 589 (771)
T TIGR01069 581 VESIIRELK 589 (771)
T ss_pred HHHHHHHHH
Confidence 334444444
No 225
>PRK14163 heat shock protein GrpE; Provisional
Probab=25.51 E-value=1.3e+02 Score=30.10 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=16.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 81 ELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 81 ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
+|+++|.+++..+.+|+..|.|++.+.|..|+--.
T Consensus 44 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~ 78 (214)
T PRK14163 44 GLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVE 78 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555554433
No 226
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.45 E-value=7.2e+02 Score=25.42 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=3.8
Q ss_pred ccccCCChh
Q 010974 187 CYFCNSSFA 195 (496)
Q Consensus 187 ~~~~~~dla 195 (496)
|++|+--|+
T Consensus 200 C~GC~m~l~ 208 (239)
T COG1579 200 CGGCHMKLP 208 (239)
T ss_pred ccCCeeeec
Confidence 344444443
No 227
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=25.30 E-value=3.7e+02 Score=27.64 Aligned_cols=74 Identities=27% Similarity=0.380 Sum_probs=38.6
Q ss_pred HHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHhhhHHHHHHhhhhHHHHH
Q 010974 16 DIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEA-QVVSLCQQRKIDELEAQLGEAEDIVK 94 (496)
Q Consensus 16 diilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~Ea-E~~sl~~qrki~ELeaqL~eaed~v~ 94 (496)
|+-+..+-|+-..++.+|-=+..+ -+.+.++++||+.++--+-+. +..-+--+..|++|-.+|++.+.-|+
T Consensus 218 d~Wi~~ae~~~~~~~~S~ef~~~~--------g~~~~a~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r 289 (293)
T PF09712_consen 218 DIWIDAAEEAYEELFRSEEFAQAY--------GQLVNALMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRREVR 289 (293)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333322 345566777777776433321 22233456777777776666655555
Q ss_pred HHH
Q 010974 95 DLR 97 (496)
Q Consensus 95 ~Lr 97 (496)
.|+
T Consensus 290 ~Lk 292 (293)
T PF09712_consen 290 ALK 292 (293)
T ss_pred Hhc
Confidence 543
No 228
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.29 E-value=1.4e+03 Score=28.47 Aligned_cols=110 Identities=23% Similarity=0.295 Sum_probs=70.9
Q ss_pred CCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHH----hhhhhHHHHHHHHHHH--
Q 010974 1 MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLK----QMLDAKVNEAQVVSLC-- 74 (496)
Q Consensus 1 MadSekl~ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK----~~~daki~EaE~~sl~-- 74 (496)
|--||.|.-+..|..=-|...-||||-|-| |||-+-++.=-.--.++-+-.|..|+ ++++.+-+-+++.-+.
T Consensus 156 MKp~EILsMvEEAAGTrmye~kKe~A~kti--ekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~ 233 (1174)
T KOG0933|consen 156 MKPSEILSMVEEAAGTRMYENKKEAAEKTI--EKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRI 233 (1174)
T ss_pred CCcHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777777788887766 56665555444444555555555554 4666654433333222
Q ss_pred --------HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 75 --------QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 75 --------~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
.-.+.+.+..++++.++.|+.|.+++.....|++-+-+
T Consensus 234 ~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~ 279 (1174)
T KOG0933|consen 234 CIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEK 279 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 22455678888999999999998888777776665443
No 229
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=25.24 E-value=3.4e+02 Score=26.73 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=9.2
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLRE 102 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~ 102 (496)
|+.+++++..|+.-+...+.+++|
T Consensus 110 i~~~~~~~~~a~~~l~~a~~~~~r 133 (334)
T TIGR00998 110 VESLKIKLEQAREKLLQAELDLRR 133 (334)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333444444443333333333333
No 230
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.42 E-value=2.2e+02 Score=32.82 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHH
Q 010974 13 AYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDI 92 (496)
Q Consensus 13 AyadiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~ 92 (496)
++|.||--..-.+|-+....|++ ...+..+.+-.=+---..+-.+..-+.+--..+..+.+|++.|.+.+++
T Consensus 380 ika~VIrG~~l~eal~~~~e~~~--------p~e~~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~e 451 (652)
T COG2433 380 IKALVIRGYPLAEALSKVKEEER--------PREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKRE 451 (652)
T ss_pred HHHHeecCCcHHHHHHHHHhhhc--------cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 010974 93 VKDLRADLREAQDELE 108 (496)
Q Consensus 93 v~~Lr~ELr~~~~eLE 108 (496)
|-.|+.+|.+.+.+.+
T Consensus 452 ie~L~~~l~~~~r~~~ 467 (652)
T COG2433 452 IEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHH
No 231
>PRK14147 heat shock protein GrpE; Provisional
Probab=24.38 E-value=1.6e+02 Score=28.20 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=14.7
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~EL 100 (496)
.+|++|++++.+.+|.+..+++|+
T Consensus 25 ~~l~~l~~e~~elkd~~lR~~Ad~ 48 (172)
T PRK14147 25 AEVESLRSEIALVKADALRERADL 48 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667776666666655555555
No 232
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=24.36 E-value=1.4e+02 Score=30.42 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=29.6
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.+++.|++|+.+.+.-...++.|+...+.+|++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4788888888888888888888888888888766544
No 233
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=24.29 E-value=1.7e+02 Score=30.16 Aligned_cols=53 Identities=25% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 61 LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 61 ~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
+..++.+++-..-..+.++++.+++|.+.++.+..|+.++.....+.+.+...
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 234
>PF06729 CENP-R: Kinetochore component, CENP-R; InterPro: IPR009601 This family consists of mammalian nuclear receptor co-activator NRIF3 proteins. NRIF3 exhibits a distinct receptor specificity in interacting with and potentiating the activity of only TRs and RXRs but not other examined nuclear receptors. NRIF3 as a coregulator that possesses both transactivation and transrepression domains and/or functions. Collectively, the NRIF3 family of coregulators may play dual roles in mediating both positive and negative regulatory effects on gene expression [].
Probab=24.09 E-value=3.8e+02 Score=25.66 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHH-HHhhhhhHHHHH--HHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 45 AAKEDALRMLLR-LKQMLDAKVNEA--QVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 45 ~~Keeal~~LlR-LK~~~daki~Ea--E~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
.+++|++++|+- +.+..+ +|.|+ .+.|+.-+.=-.||| +|-+-.+.=.+|+.||+..+.-.-||.+.+.
T Consensus 55 ~t~dD~fm~L~SkvekS~e-eime~~qnL~slQALeGsreLE-nLiGvs~sSc~Lk~ElqKTkeLmtkv~k~kL 126 (139)
T PF06729_consen 55 QTEDDEFMVLLSKVEKSLE-EIMEIRQNLSSLQALEGSRELE-NLIGVSCSSCDLKRELQKTKELMTKVEKQKL 126 (139)
T ss_pred CcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccHHHH-HHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888763 333332 22222 222222222222332 2333444446899999999999888888554
No 235
>PRK14151 heat shock protein GrpE; Provisional
Probab=24.00 E-value=1.5e+02 Score=28.64 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=15.5
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~EL 100 (496)
.+|++|++++.+.+|....+++|.
T Consensus 27 ~~i~~le~e~~el~d~~lR~~Ae~ 50 (176)
T PRK14151 27 ARVQELEEQLAAAKDQSLRAAADL 50 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777776666666666655
No 236
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.86 E-value=1.7e+02 Score=25.13 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=15.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
++.+++.+...+.-+.+|..++...+.+|.++
T Consensus 72 ~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 72 LETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 237
>PRK14144 heat shock protein GrpE; Provisional
Probab=23.67 E-value=1.5e+02 Score=29.33 Aligned_cols=38 Identities=26% Similarity=0.176 Sum_probs=20.8
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
.+.+|++.+..++.-+.+|+..+.|+.+++|..|+--.
T Consensus 46 ~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~ 83 (199)
T PRK14144 46 SYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRME 83 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555566666665555443
No 238
>PRK14146 heat shock protein GrpE; Provisional
Probab=23.58 E-value=1.6e+02 Score=29.19 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=19.8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
+..|+++|.+++.-+.+|+..+.|++++++..|+--.
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~ 92 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSA 92 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555566665555443
No 239
>PRK14153 heat shock protein GrpE; Provisional
Probab=23.34 E-value=1.5e+02 Score=29.21 Aligned_cols=39 Identities=8% Similarity=0.147 Sum_probs=19.7
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
.++..++.++.+++.-+.+|+..+.|+..+.|..|+.-.
T Consensus 33 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 33 PEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555555555555443
No 240
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=23.33 E-value=3.7e+02 Score=27.11 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=3.8
Q ss_pred CCCchhhh
Q 010974 228 SLPGQVEQ 235 (496)
Q Consensus 228 s~sg~~d~ 235 (496)
|.+|.+..
T Consensus 214 P~dG~V~~ 221 (346)
T PRK10476 214 PFDGRVVG 221 (346)
T ss_pred CCCcEEEe
Confidence 45554444
No 241
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.11 E-value=2.3e+02 Score=23.32 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=24.6
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
+++|+.+...++..|..|...+.....+|+.+.....
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666777777777777777776665543
No 242
>PHA02047 phage lambda Rz1-like protein
Probab=23.01 E-value=2.9e+02 Score=25.19 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=35.6
Q ss_pred HHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 010974 74 CQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLD 119 (496)
Q Consensus 74 ~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l~ 119 (496)
..++.++.|.+||..|+--+..++.-...+++.-|+.++.....|+
T Consensus 31 ~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 31 IAHEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788899999999988888888888777777776666666663
No 243
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=22.94 E-value=5.5e+02 Score=24.46 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=32.0
Q ss_pred HHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 72 SLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 72 sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
+..++.++..+|++|..|++.-..|..+|+.-=-.|=.++..-.+|+
T Consensus 144 ~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~ 190 (216)
T cd07599 144 SLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPL 190 (216)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56677788888888888888888888777654444444444444443
No 244
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=22.82 E-value=7.3e+02 Score=29.35 Aligned_cols=79 Identities=22% Similarity=0.172 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 36 TIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 36 a~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
|..|+|+...|+|++=+=+-+|-. .....|-.....+.-+.+++.||..|+.-......+--.++.||...+....
T Consensus 498 a~liqqeV~~ArEqgeaE~~~Lse----~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~ 573 (739)
T PF07111_consen 498 ARLIQQEVGRAREQGEAERQQLSE----VAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYE 573 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444333321 1112222223334555566666666666555555555555555555554444
Q ss_pred hhh
Q 010974 116 QLL 118 (496)
Q Consensus 116 q~l 118 (496)
+.+
T Consensus 574 ~al 576 (739)
T PF07111_consen 574 RAL 576 (739)
T ss_pred HHH
Confidence 444
No 245
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.79 E-value=1.2e+02 Score=30.02 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 64 KVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 64 ki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+..|+++ --.+++-|.||+-++++.+..|++++..+..+...|.+.+.
T Consensus 94 ~~~e~~k-ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~ 141 (181)
T KOG3335|consen 94 ARKERKK-EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPES 141 (181)
T ss_pred hhcchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 4455554 33567788999999999999998888888888877766653
No 246
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=22.72 E-value=3.7e+02 Score=26.05 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhHH-------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 68 AQVVSLCQQRKIDE-------LEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 68 aE~~sl~~qrki~E-------LeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
+=...-.+|+|-++ |-.||..|.-.-..|+.||.++..+++.++....
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456778888 8899999999999999999998888888766543
No 247
>PRK14141 heat shock protein GrpE; Provisional
Probab=22.67 E-value=1.4e+02 Score=29.75 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHhhhhhh
Q 010974 61 LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADL----REAQDELERATYNEKQLL 118 (496)
Q Consensus 61 ~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~EL----r~~~~eLEk~r~~q~q~l 118 (496)
.|-...+-+..+-....+|++|++++.+.+|....+++|+ +|..-|.+.++..-.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~ 83 (209)
T PRK14141 22 VDREAKPYEMEDDPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGF 83 (209)
T ss_pred cccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 248
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=22.64 E-value=2e+02 Score=24.64 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=21.1
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
||+++|+-+.+...++..|..=|.+.+.-.+.+
T Consensus 1 rI~eme~~y~~~~~~l~~le~~l~~~~~~~~~~ 33 (90)
T PF14131_consen 1 RIQEMEKIYNEWCELLEELEEALEKWQEAQPDY 33 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888877777777766666555544444443
No 249
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.61 E-value=80 Score=35.06 Aligned_cols=28 Identities=39% Similarity=0.531 Sum_probs=22.7
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLRE 102 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~ 102 (496)
+-.+|+.|++||...|+-|.+||.+|.-
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456889999999999999988888753
No 250
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.60 E-value=1.3e+03 Score=27.27 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=41.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 54 LLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 54 LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
|=-++.||+.+|.|.|..-.+.-..++|+ +.|-+-.+.|..|+.|+..++.+|-.++.=+
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee~-~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~ 298 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREEL-ATLRENRETVGLLQEELEGLQSKLGRLEKLQ 298 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777766666665566665 4577888999999999988887765554433
No 251
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=22.55 E-value=8.5e+02 Score=25.85 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=27.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 80 DELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 80 ~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
..|.++|++.+|.-++...-|.+++.||.+.|+.
T Consensus 272 ~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 272 RQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3577888888888888888888888888888764
No 252
>PRK11281 hypothetical protein; Provisional
Probab=22.45 E-value=1.2e+03 Score=28.82 Aligned_cols=100 Identities=20% Similarity=0.195 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHH---HHHHHHHHHhhhhhHH-HHHHHHHHH-HHhhhHHHH
Q 010974 9 ALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKED---ALRMLLRLKQMLDAKV-NEAQVVSLC-QQRKIDELE 83 (496)
Q Consensus 9 ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Kee---al~~LlRLK~~~daki-~EaE~~sl~-~qrki~ELe 83 (496)
++.+.|-+.+-... .+...+.++..|++.+..+-++ |-+-|-+||+-.+... ......|+. -.+++.+++
T Consensus 60 ~~~~~l~~tL~~L~-----qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~ 134 (1113)
T PRK11281 60 LVQQDLEQTLALLD-----KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTL 134 (1113)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHH
Confidence 34445544443332 2334445555555555554433 2233556666333321 111222222 233445666
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 84 AQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 84 aqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
++|+++|...+++...|-..++..|.+++.
T Consensus 135 ~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 135 DQLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 666666666666655555555555555544
No 253
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.29 E-value=1.9e+02 Score=28.10 Aligned_cols=43 Identities=33% Similarity=0.313 Sum_probs=28.1
Q ss_pred HHHHHhhhHHHHHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHhh
Q 010974 72 SLCQQRKIDELEAQLGEAEDIVKDLRADLRE----AQDELERATYNE 114 (496)
Q Consensus 72 sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~----~~~eLEk~r~~q 114 (496)
.-..+.+|++|++|+.+..|..-.+++|+.- +..+.|++++.-
T Consensus 38 ~~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a 84 (193)
T COG0576 38 LEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYA 84 (193)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344488999999999877777777777643 334444444433
No 254
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.24 E-value=4.6e+02 Score=21.82 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=25.9
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
=+....||+.|=.-+.+|+.|+..++.||+-.+
T Consensus 35 Rd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 35 RDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355667888888888888888888888887655
No 255
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.09 E-value=9.8e+02 Score=25.55 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=37.1
Q ss_pred HHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 72 SLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 72 sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
-...|++..+++.+..++..-|..+..||.+..++||++...
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQE 316 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999999999999998654
No 256
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.07 E-value=2.9e+02 Score=31.37 Aligned_cols=40 Identities=35% Similarity=0.561 Sum_probs=30.1
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
|..+++|.+++.+.++-+..|+.+++.+..+++.......
T Consensus 334 ~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~ 373 (594)
T PF05667_consen 334 QEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENE 373 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888877776665543
No 257
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=22.06 E-value=4.3e+02 Score=21.33 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=15.5
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
.|.+++.++..++..|..+|.+|..+.-+++.
T Consensus 60 ~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 60 AIQQQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555544444433
No 258
>PRK12705 hypothetical protein; Provisional
Probab=21.70 E-value=1.2e+03 Score=26.30 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=14.4
Q ss_pred CCCCCCCCceeecccCCCcccccccc
Q 010974 148 CLPDVQPDSVMASDVGNSTLNGTYEN 173 (496)
Q Consensus 148 ~~~~~~~~sv~~~~~k~~~l~~~~~~ 173 (496)
..+.....+|++...-+.-|-++--+
T Consensus 190 a~~~~~e~tvs~v~lp~demkGriIG 215 (508)
T PRK12705 190 ASETASDLSVSVVPIPSDAMKGRIIG 215 (508)
T ss_pred ccchhhhheeeeeecCChHhhccccC
Confidence 34445556666666655555555544
No 259
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=21.67 E-value=1.7e+02 Score=27.23 Aligned_cols=42 Identities=29% Similarity=0.275 Sum_probs=33.8
Q ss_pred hhhHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 77 RKIDELEAQLGEAEDIV--KDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 77 rki~ELeaqL~eaed~v--~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
=.+|||.|.++-|...+ ..++..|.+++..|-.+......+.
T Consensus 30 G~lDEl~a~igla~~~~~~~~~~~~L~~iq~~L~~l~~~la~~~ 73 (163)
T PF01923_consen 30 GTLDELNAFIGLARSEIKEEELREILERIQNELFDLGAELATPE 73 (163)
T ss_dssp HHHHHHHHHHHHHHTHCTTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eeHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 36889999999888888 7888888888888888877766543
No 260
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=21.38 E-value=2.4e+02 Score=25.85 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=24.3
Q ss_pred HHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 74 CQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 74 ~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.|.++|.+|++++++++. .|+..+++....|++++.-
T Consensus 101 ~Q~~~i~~L~~E~~~~~~---el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 101 EQLKRIKELEEENEEAEE---ELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 577899999998887764 4455555555555555443
No 261
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.23 E-value=3.6e+02 Score=22.54 Aligned_cols=42 Identities=31% Similarity=0.424 Sum_probs=31.8
Q ss_pred HHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 72 SLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 72 sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
-+.+..-|.-|-++..+.+..+..|+..+..+..+++.++..
T Consensus 28 el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 28 ELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888888888888888888877777776654
No 262
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=21.19 E-value=1.3e+03 Score=27.03 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=26.6
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
+.+++|++.+.+.+.++.+-..=++-..+||+..++.-..++
T Consensus 434 ~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~kfg~~R 475 (738)
T TIGR01061 434 EEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFAQQR 475 (738)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345566666666666666655556666777777777766555
No 263
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=21.13 E-value=6.1e+02 Score=24.30 Aligned_cols=8 Identities=13% Similarity=0.189 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 010974 38 RYQQELFA 45 (496)
Q Consensus 38 ~~~qel~~ 45 (496)
..+.+|..
T Consensus 45 ~I~~~L~~ 52 (155)
T PRK06569 45 NIQDNITQ 52 (155)
T ss_pred HHHhHHHH
Confidence 34444443
No 264
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=21.09 E-value=4.8e+02 Score=29.27 Aligned_cols=73 Identities=27% Similarity=0.311 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh---hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 36 TIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRK---IDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 36 a~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrk---i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
+++++||- .+-+|||+||--|---+|--+-+-|.+...|-+- ++||-....+.=-+|..--+-+-.++.|||-
T Consensus 304 tarw~qEe-ga~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar~lqeLR~~~delct~versavs~asLrseLeg 379 (558)
T PF15358_consen 304 TARWHQEE-GAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTARGLQELRGRADELCTMVERSAVSVASLRSELEG 379 (558)
T ss_pred hhHHHHHH-hHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhHHHHHHHHhhc
Confidence 45677764 4567899999988888888888888766555443 4555555444444444444444444444443
No 265
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=21.07 E-value=1.4e+03 Score=26.80 Aligned_cols=103 Identities=24% Similarity=0.347 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHHhhhHHHH
Q 010974 8 MALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRM----LLRLKQMLDAKVNEAQVVSLCQQRKIDELE 83 (496)
Q Consensus 8 ~ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~----LlRLK~~~daki~EaE~~sl~~qrki~ELe 83 (496)
++.|.|---+|+-----|=.||..+||....+.+.|..+....=.. +=.+...+++ +|-|+..|.. -|+-++
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~--kd~~i~~L~~--di~~~~ 305 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQ--KDSEIAQLSN--DIERLE 305 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhH--HHHHHHHHHH--HHHHHH
Confidence 4555554444444444577899999999999999998877643222 1111111122 3333333321 222233
Q ss_pred HHhhhh----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 84 AQLGEA----EDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 84 aqL~ea----ed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
+-|.++ -..|.+|-.+|.....+||++.+..
T Consensus 306 ~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 306 ASLVEEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222 2246667777777777777776653
No 266
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=21.06 E-value=2.2e+02 Score=25.78 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=22.7
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+.+|++|++++.+.++.+..+.+|+...+..+++-..
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~ 53 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKE 53 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666665555555443
No 267
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=20.93 E-value=7.5e+02 Score=23.75 Aligned_cols=69 Identities=25% Similarity=0.334 Sum_probs=32.5
Q ss_pred HHHHHHHHhhHHHHHHHHH-HHhhHHHHHHHH-HHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHH
Q 010974 12 KAYADIILNTAKEAAARIM-VSERKTIRYQQE-LFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEA 84 (496)
Q Consensus 12 kAyadiilntaKEaAaRvm-~aErka~~~~qe-l~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELea 84 (496)
+.....-+..|+..|..|+ -|++.|..+..+ +..+|+++ +++++-++..+.+.........+++..-|.
T Consensus 22 ~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~----~~~r~~~E~E~~~~~~el~~~E~rl~~rE~ 92 (201)
T PF12072_consen 22 KKINRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEA----QKLRQELERELKERRKELQRLEKRLQQREE 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443 345555544333 33455544 456666666555544444444444444443
No 268
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.72 E-value=1.6e+03 Score=27.51 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010974 93 VKDLRADLREAQDELERATY 112 (496)
Q Consensus 93 v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+..|+.++..+..+|+.+.+
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~ 492 (1311)
T TIGR00606 473 ILELDQELRKAERELSKAEK 492 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444443
No 269
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=20.65 E-value=7.3e+02 Score=29.95 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=30.7
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLD 119 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l~ 119 (496)
...+||+++..+.++|+.+-..=++-..+||..+.+.-..|+.
T Consensus 453 ~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik~kygd~RR 495 (957)
T PRK13979 453 KEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKEKYGDERR 495 (957)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3456666777777777777777777778888887777766653
No 270
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.65 E-value=2.1e+02 Score=25.31 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=27.5
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.+..++++|+.+++.-+..|+.+-..+..+++.++++
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4667777777777777777777777777777777764
No 271
>smart00338 BRLZ basic region leucin zipper.
Probab=20.36 E-value=2.2e+02 Score=22.45 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=18.8
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
.+++.|+++-.+....|..|+.|+..+..+|
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555566666666666666666554
No 272
>PF13514 AAA_27: AAA domain
Probab=20.25 E-value=8.7e+02 Score=29.04 Aligned_cols=88 Identities=24% Similarity=0.232 Sum_probs=62.4
Q ss_pred HHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 28 RIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 28 Rvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
.+.-+++--..+++++...+.+.-.++-+|-.-.+---.++-..++....+|.+|..+....+..+..++.+|.+...+|
T Consensus 297 ~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~ 376 (1111)
T PF13514_consen 297 EYRKARQDLPRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAEREL 376 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566777777777776666666652223333344456778888999999888888888889999999988888
Q ss_pred HHHHHhhh
Q 010974 108 ERATYNEK 115 (496)
Q Consensus 108 Ek~r~~q~ 115 (496)
+.++....
T Consensus 377 ~~~~~~~~ 384 (1111)
T PF13514_consen 377 EQLQAELA 384 (1111)
T ss_pred HHHHHHHh
Confidence 88877643
No 273
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.18 E-value=3.2e+02 Score=24.49 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=12.3
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
++-++..+...+.....|+..|...+..|..
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444433
No 274
>PRK11281 hypothetical protein; Provisional
Probab=20.13 E-value=5.6e+02 Score=31.41 Aligned_cols=89 Identities=20% Similarity=0.184 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHHH------HHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHH
Q 010974 24 EAAARIMVSERKTIRYQQELFAAKEDALR------MLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLR 97 (496)
Q Consensus 24 EaAaRvm~aErka~~~~qel~~~Keeal~------~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr 97 (496)
+-..++--+.++....+++|...|++... .-+-+.+ +++++.+.|-..-..|....++++||-+++.--..-|
T Consensus 84 ~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~q-LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ 162 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQ 162 (1113)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 34456666777777777777766653222 1122333 5555555554444445555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHh
Q 010974 98 ADLREAQDELERATYN 113 (496)
Q Consensus 98 ~ELr~~~~eLEk~r~~ 113 (496)
..+-+.+..+...++.
T Consensus 163 ~~lsea~~RlqeI~~~ 178 (1113)
T PRK11281 163 AALYANSQRLQQIRNL 178 (1113)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555543
No 275
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=20.09 E-value=6e+02 Score=25.55 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=44.0
Q ss_pred HHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 010974 17 IILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQ 76 (496)
Q Consensus 17 iilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~q 76 (496)
.|..+..+||-|||-+=-+|.-++.+|.. +|-.+.=|+.+.|...+.-.|...|..+
T Consensus 57 YVi~~TEqAA~rtLnaVE~a~p~~d~l~~---~a~~L~~~w~~l~~~~~~~~e~~~L~~~ 113 (214)
T PRK11166 57 YVAQMTEQAAERVLNAVEAAQPHQDQLEK---EAKALDARWDEWFANPIELADARELVTD 113 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 47889999999999988888888887753 6666667777777777766677767655
No 276
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=20.07 E-value=9.8e+02 Score=24.78 Aligned_cols=94 Identities=21% Similarity=0.305 Sum_probs=56.6
Q ss_pred HHHHHhhHHHHHHHHHHHhhHHHHHHH-------HHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----HHhhhHHH
Q 010974 15 ADIILNTAKEAAARIMVSERKTIRYQQ-------ELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLC-----QQRKIDEL 82 (496)
Q Consensus 15 adiilntaKEaAaRvm~aErka~~~~q-------el~~~Keeal~~LlRLK~~~daki~EaE~~sl~-----~qrki~EL 82 (496)
+|=|.+.+||----. +--|+-..++. +|.-+|++-++.||.|- .+.+-.|.+|..|. .-+-|+.|
T Consensus 17 ~dDlE~i~kelie~l-~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla--~eq~k~e~~m~~Lea~VEkrD~~IQqL 93 (272)
T KOG4552|consen 17 ADDLEHIVKELIETL-INRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLA--PEQQKREQLMRTLEAHVEKRDEVIQQL 93 (272)
T ss_pred hhHHHHHHHHHHHHH-HhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455666666644322 22345555554 57889999999998763 33334444444332 34568889
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 83 EAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 83 eaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
+.+|.+||-|++.-=..-+..-.-.++++
T Consensus 94 qk~LK~aE~iLtta~fqA~qKLksi~~A~ 122 (272)
T KOG4552|consen 94 QKNLKSAEVILTTACFQANQKLKSIKEAE 122 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988765544443333333433
Done!