Query 010974
Match_columns 496
No_of_seqs 26 out of 28
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 18:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq9_A Bone marrow stromal ant 93.8 1.2 4E-05 44.3 14.4 63 35-104 405-470 (471)
2 2fxo_A Myosin heavy chain, car 81.7 25 0.00085 30.4 15.4 58 41-112 61-118 (129)
3 3hnw_A Uncharacterized protein 81.7 15 0.00051 32.6 11.0 82 27-109 50-135 (138)
4 1zxa_A CGMP-dependent protein 81.3 1.4 4.7E-05 35.6 3.9 35 74-108 22-56 (67)
5 3na7_A HP0958; flagellar bioge 78.9 10 0.00034 35.8 9.5 64 49-113 5-75 (256)
6 3nmd_A CGMP dependent protein 78.1 3.8 0.00013 33.6 5.5 51 49-103 16-66 (72)
7 2ocy_A RAB guanine nucleotide 77.8 9.9 0.00034 34.8 8.8 84 19-114 65-152 (154)
8 3vkg_A Dynein heavy chain, cyt 75.3 28 0.00097 44.2 14.4 12 215-226 2220-2231(3245)
9 3efg_A Protein SLYX homolog; x 74.8 5.9 0.0002 32.3 5.8 51 61-111 12-62 (78)
10 3vkg_A Dynein heavy chain, cyt 72.8 52 0.0018 41.9 15.8 33 68-100 2019-2051(3245)
11 3oja_B Anopheles plasmodium-re 70.9 41 0.0014 33.9 12.2 33 77-109 544-576 (597)
12 3na7_A HP0958; flagellar bioge 70.7 71 0.0024 30.0 14.8 52 60-111 101-152 (256)
13 3mq7_A Bone marrow stromal ant 70.0 42 0.0014 29.9 10.5 32 83-114 70-101 (121)
14 3oja_B Anopheles plasmodium-re 69.7 98 0.0033 31.2 16.4 60 57-116 510-576 (597)
15 1gk4_A Vimentin; intermediate 69.4 24 0.00081 28.6 8.2 46 54-109 6-51 (84)
16 2efr_A General control protein 69.1 69 0.0024 29.2 12.8 19 27-45 35-53 (155)
17 1i84_S Smooth muscle myosin he 69.0 21 0.00071 40.5 10.5 23 79-101 929-951 (1184)
18 2xdj_A Uncharacterized protein 68.4 25 0.00086 29.0 8.3 55 62-116 5-59 (83)
19 3cve_A Homer protein homolog 1 67.6 17 0.00058 29.7 6.9 47 59-105 3-49 (72)
20 3i00_A HIP-I, huntingtin-inter 67.5 31 0.0011 30.2 9.1 58 56-113 26-83 (120)
21 3tnu_A Keratin, type I cytoske 66.1 25 0.00085 30.3 8.2 27 84-110 77-103 (131)
22 2b9c_A Striated-muscle alpha t 64.0 48 0.0016 29.7 9.9 75 1-98 48-122 (147)
23 3tnu_B Keratin, type II cytosk 63.4 58 0.002 27.9 10.0 26 85-110 76-101 (129)
24 2v71_A Nuclear distribution pr 62.2 61 0.0021 30.5 10.6 39 80-118 45-83 (189)
25 1gd2_E Transcription factor PA 61.3 13 0.00046 29.9 5.2 38 76-113 28-65 (70)
26 1t2k_D Cyclic-AMP-dependent tr 57.0 29 0.00098 26.4 6.2 39 75-113 20-58 (61)
27 4dk0_A Putative MACA; alpha-ha 56.6 35 0.0012 32.3 8.1 39 76-114 114-152 (369)
28 2e7s_A RAB guanine nucleotide 54.4 4.4 0.00015 36.5 1.4 73 24-108 58-134 (135)
29 3cvf_A Homer-3, homer protein 54.2 36 0.0012 28.2 6.7 45 60-104 10-54 (79)
30 3onj_A T-snare VTI1; helix, HA 54.1 40 0.0014 27.9 7.1 56 38-103 5-60 (97)
31 3aco_A Pacsin2, protein kinase 53.9 1.6E+02 0.0053 28.3 13.1 64 48-111 153-226 (350)
32 3i00_A HIP-I, huntingtin-inter 53.0 80 0.0027 27.6 9.1 65 52-116 15-79 (120)
33 1ci6_A Transcription factor AT 52.8 32 0.0011 26.6 6.0 36 76-111 22-57 (63)
34 3ilw_A DNA gyrase subunit A; D 52.1 61 0.0021 34.2 9.7 66 45-117 397-463 (470)
35 3azd_A Short alpha-tropomyosin 51.9 6.8 0.00023 28.1 1.8 25 76-100 10-34 (37)
36 2wt7_A Proto-oncogene protein 51.6 35 0.0012 26.3 6.0 39 75-113 21-59 (63)
37 3efg_A Protein SLYX homolog; x 51.3 31 0.0011 28.0 5.9 39 77-115 14-52 (78)
38 2dgc_A Protein (GCN4); basic d 50.1 18 0.00063 28.2 4.2 33 75-107 28-60 (63)
39 3abh_A Pacsin2, protein kinase 49.7 1.7E+02 0.0057 27.4 12.1 65 47-111 152-226 (312)
40 1zvu_A Topoisomerase IV subuni 49.7 44 0.0015 37.0 8.5 101 5-119 348-451 (716)
41 2qyw_A Vesicle transport throu 49.1 43 0.0015 28.0 6.6 58 37-103 18-75 (102)
42 3m9b_A Proteasome-associated A 48.9 14 0.00049 36.2 4.2 35 77-111 61-95 (251)
43 1ic2_A Tropomyosin alpha chain 48.7 1E+02 0.0035 24.6 10.4 65 35-101 7-72 (81)
44 2xcs_B DNA gyrase subunit B, D 48.2 86 0.0029 34.6 10.4 42 77-118 644-685 (692)
45 1vcs_A Vesicle transport throu 46.7 27 0.00094 29.1 5.0 68 39-116 10-92 (102)
46 2dfs_A Myosin-5A; myosin-V, in 45.4 43 0.0015 38.2 7.8 28 84-111 977-1004(1080)
47 3nmd_A CGMP dependent protein 43.1 59 0.002 26.6 6.3 25 89-113 38-62 (72)
48 2pms_C Pneumococcal surface pr 42.5 1.3E+02 0.0046 26.8 9.0 92 26-118 12-123 (125)
49 1x8y_A Lamin A/C; structural p 42.2 58 0.002 26.5 6.2 43 58-110 12-54 (86)
50 2lw1_A ABC transporter ATP-bin 42.1 55 0.0019 26.5 6.0 33 78-110 37-75 (89)
51 3mov_A Lamin-B1; LMNB1, B-type 42.0 35 0.0012 28.6 4.9 54 47-110 10-63 (95)
52 2i1j_A Moesin; FERM, coiled-co 41.9 11 0.00037 39.9 2.3 90 25-115 354-457 (575)
53 1fxk_C Protein (prefoldin); ar 41.5 47 0.0016 28.0 5.8 37 76-112 94-130 (133)
54 3haj_A Human pacsin2 F-BAR; pa 41.3 3E+02 0.01 27.9 13.8 60 48-107 146-215 (486)
55 1jnm_A Proto-oncogene C-JUN; B 41.3 32 0.0011 26.3 4.3 38 75-112 20-57 (62)
56 4b4t_J 26S protease regulatory 41.2 23 0.0008 36.2 4.5 44 57-100 19-62 (405)
57 1wt6_A Myotonin-protein kinase 41.1 1.3E+02 0.0043 25.3 8.0 31 82-112 43-73 (81)
58 3hnw_A Uncharacterized protein 41.1 1.9E+02 0.0063 25.6 9.7 35 77-111 75-109 (138)
59 3fpp_A Macrolide-specific effl 40.8 82 0.0028 29.5 7.9 38 76-113 113-150 (341)
60 3ghg_A Fibrinogen alpha chain; 40.6 2.8E+02 0.0095 30.1 12.5 35 84-118 131-165 (562)
61 1dh3_A Transcription factor CR 40.0 40 0.0014 25.6 4.6 27 79-112 24-50 (55)
62 3m9b_A Proteasome-associated A 39.8 31 0.0011 33.8 4.9 43 76-118 53-95 (251)
63 1ykh_B RNA polymerase II holoe 38.0 56 0.0019 28.6 5.8 38 73-113 88-125 (132)
64 3m91_A Proteasome-associated A 37.1 67 0.0023 24.6 5.4 34 77-110 16-49 (51)
65 3htk_A Structural maintenance 36.9 79 0.0027 23.4 5.8 36 79-114 7-42 (60)
66 3m0d_C TNF receptor-associated 36.5 49 0.0017 25.7 4.7 32 79-110 8-39 (65)
67 4ani_A Protein GRPE; chaperone 36.3 54 0.0019 31.2 5.9 39 78-116 60-98 (213)
68 3trt_A Vimentin; cytoskeleton, 36.3 68 0.0023 24.9 5.5 36 76-111 34-76 (77)
69 1yke_B RNA polymerase II holoe 36.0 63 0.0022 29.1 6.0 46 73-121 88-133 (151)
70 2lw1_A ABC transporter ATP-bin 35.3 35 0.0012 27.6 3.8 30 71-100 16-45 (89)
71 2xnx_M M protein, M1-BC1; cell 34.3 1.5E+02 0.005 27.2 8.0 49 60-110 58-106 (146)
72 4etp_A Kinesin-like protein KA 34.2 1.1E+02 0.0036 31.1 7.9 28 79-106 19-46 (403)
73 1gd2_E Transcription factor PA 33.5 58 0.002 26.2 4.8 31 79-109 38-68 (70)
74 3mq9_A Bone marrow stromal ant 33.2 3.6E+02 0.012 26.5 15.0 26 84-109 443-468 (471)
75 3m91_A Proteasome-associated A 32.8 81 0.0028 24.1 5.2 37 77-113 9-45 (51)
76 2jee_A YIIU; FTSZ, septum, coi 31.7 73 0.0025 26.5 5.2 23 80-102 9-31 (81)
77 1ci6_A Transcription factor AT 31.7 64 0.0022 25.0 4.6 32 78-109 31-62 (63)
78 1zxa_A CGMP-dependent protein 31.2 54 0.0018 26.5 4.2 36 80-115 14-49 (67)
79 2v4h_A NF-kappa-B essential mo 30.9 87 0.003 27.5 5.8 31 79-109 26-56 (110)
80 2zdi_C Prefoldin subunit alpha 30.3 68 0.0023 27.9 5.1 38 76-113 104-141 (151)
81 3tnu_B Keratin, type II cytosk 30.2 2E+02 0.0067 24.6 7.9 38 56-93 57-98 (129)
82 1c1g_A Tropomyosin; contractIl 29.6 2.6E+02 0.0089 23.8 16.7 9 6-14 7-15 (284)
83 1m1j_C Fibrinogen gamma chain; 29.6 2.3E+02 0.008 29.2 9.6 73 41-113 48-127 (409)
84 2no2_A HIP-I, huntingtin-inter 29.4 2.6E+02 0.009 23.7 9.5 63 52-114 4-77 (107)
85 2inr_A DNA topoisomerase 4 sub 29.1 2E+02 0.0067 30.8 9.2 42 77-118 461-502 (514)
86 3kin_B Kinesin heavy chain; mo 29.1 64 0.0022 27.6 4.6 33 80-112 85-117 (117)
87 1lwu_C Fibrinogen gamma chain; 28.6 1.1E+02 0.0036 30.8 6.7 33 66-98 15-47 (323)
88 2x3v_A Syndapin I, protein kin 28.4 3.8E+02 0.013 25.2 15.3 66 45-110 141-216 (337)
89 2b5u_A Colicin E3; high resolu 27.6 2.4E+02 0.0082 30.5 9.4 19 188-206 419-437 (551)
90 2xkj_E Topoisomerase IV; type 27.5 3E+02 0.01 30.8 10.6 100 5-118 642-744 (767)
91 1zme_C Proline utilization tra 26.5 43 0.0015 24.8 2.8 23 78-100 45-67 (70)
92 3u06_A Protein claret segregat 26.5 1.6E+02 0.0053 30.1 7.7 39 76-114 16-54 (412)
93 2v71_A Nuclear distribution pr 26.0 2.9E+02 0.01 25.9 8.8 25 58-82 44-68 (189)
94 2er8_A Regulatory protein Leu3 26.0 27 0.00092 26.3 1.5 23 76-98 48-70 (72)
95 1dkg_A Nucleotide exchange fac 25.7 93 0.0032 28.9 5.4 38 78-118 43-80 (197)
96 1t2k_D Cyclic-AMP-dependent tr 25.3 1.1E+02 0.0037 23.1 4.8 30 78-107 30-59 (61)
97 3u59_A Tropomyosin beta chain; 25.0 2.9E+02 0.0099 22.7 11.6 76 34-110 9-84 (101)
98 1wt6_A Myotonin-protein kinase 25.0 95 0.0033 26.0 4.7 57 50-106 18-74 (81)
99 1l8d_A DNA double-strand break 24.7 1.4E+02 0.0048 24.2 5.8 37 77-113 64-100 (112)
100 2wg5_A General control protein 24.6 62 0.0021 27.3 3.7 28 78-112 8-35 (109)
101 4etp_A Kinesin-like protein KA 24.2 1.6E+02 0.0055 29.8 7.2 50 64-113 11-60 (403)
102 2yy0_A C-MYC-binding protein; 24.1 80 0.0027 24.0 3.8 28 81-108 23-50 (53)
103 1tu3_F RAB GTPase binding effe 24.0 1.1E+02 0.0038 25.5 4.9 47 68-114 10-56 (79)
104 2z5i_A TM, general control pro 23.3 98 0.0034 23.4 4.2 39 65-103 7-45 (52)
105 3gpv_A Transcriptional regulat 23.2 2.4E+02 0.0082 24.3 7.3 90 20-109 17-127 (148)
106 3a7p_A Autophagy protein 16; c 22.7 3.6E+02 0.012 24.7 8.5 46 64-109 69-114 (152)
107 2f1m_A Acriflavine resistance 22.6 3.1E+02 0.01 24.8 8.2 32 77-108 98-129 (277)
108 1go4_E MAD1 (mitotic arrest de 22.5 2.8E+02 0.0096 23.8 7.3 50 64-113 20-90 (100)
109 2j69_A Bacterial dynamin-like 22.4 7E+02 0.024 26.6 12.0 60 46-112 335-394 (695)
110 3he5_B Synzip2; heterodimeric 22.0 1.1E+02 0.0039 23.3 4.2 26 82-107 22-47 (52)
111 4fm3_A Uncharacterized hypothe 21.6 1.5E+02 0.0051 25.4 5.4 38 58-102 59-96 (98)
112 1ic2_A Tropomyosin alpha chain 21.3 3.1E+02 0.011 21.7 8.5 33 79-111 29-61 (81)
113 3gp4_A Transcriptional regulat 21.2 3.9E+02 0.013 22.9 8.7 30 78-107 89-118 (142)
114 3m0a_A TNF receptor-associated 21.1 1.5E+02 0.0051 22.5 4.9 32 79-110 7-38 (66)
115 2xv5_A Lamin-A/C; structural p 21.0 1.4E+02 0.005 24.0 5.0 22 75-96 10-31 (74)
116 3s9g_A Protein hexim1; cyclin 20.2 4.3E+02 0.015 23.0 8.5 69 46-118 31-99 (104)
117 3mud_A DNA repair protein XRCC 20.0 2.6E+02 0.0089 26.1 7.1 42 66-107 131-172 (175)
No 1
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=93.77 E-value=1.2 Score=44.34 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhHHHH---HHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 010974 35 KTIRYQQELFAAKEDA---LRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQ 104 (496)
Q Consensus 35 ka~~~~qel~~~Keea---l~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~ 104 (496)
+-.++|..+..++-+| =+..|-|-..+|+++..++ +||+|||+|+.+.+..+.++++|++|.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 405 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ-------KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333444443 3677888888888776554 5999999987777777777777766643
No 2
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=81.72 E-value=25 Score=30.35 Aligned_cols=58 Identities=29% Similarity=0.388 Sum_probs=30.4
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 41 QELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 41 qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+++.+-.++-+..|..-|+-++.+|.+.+ +.|.+-++....|..+-+.+.+++..+.+
T Consensus 61 ~~~l~e~EE~~~~L~~~k~eLe~~l~el~--------------~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 61 QDNLADAEERCDQLIKNKIQLEAKVKEMN--------------KRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666665555554 44444444555555555544444444443
No 3
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.70 E-value=15 Score=32.64 Aligned_cols=82 Identities=18% Similarity=0.273 Sum_probs=49.7
Q ss_pred HHHHHHhhHH----HHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 010974 27 ARIMVSERKT----IRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLRE 102 (496)
Q Consensus 27 aRvm~aErka----~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~ 102 (496)
.+++-.+|-| .-+..||+-++++.-.+.-.|+.. +..+-..--.....|-++++++.++.+++.-+..|+.++.+
T Consensus 50 ~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~-~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 50 YRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENK-DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544 446788888888865444333332 22222222233445667777777777777777777777777
Q ss_pred HHHHHHH
Q 010974 103 AQDELER 109 (496)
Q Consensus 103 ~~~eLEk 109 (496)
+.++|+.
T Consensus 129 le~~~~~ 135 (138)
T 3hnw_A 129 LETELND 135 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777764
No 4
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=81.32 E-value=1.4 Score=35.65 Aligned_cols=35 Identities=31% Similarity=0.551 Sum_probs=27.9
Q ss_pred HHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 010974 74 CQQRKIDELEAQLGEAEDIVKDLRADLREAQDELE 108 (496)
Q Consensus 74 ~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLE 108 (496)
.+.-+|.|||+.|.++.+.|+.||.+|.+.++-|.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44568999999999999999999999999988876
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.92 E-value=10 Score=35.76 Aligned_cols=64 Identities=11% Similarity=0.253 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 010974 49 DALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIV-------KDLRADLREAQDELERATYN 113 (496)
Q Consensus 49 eal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v-------~~Lr~ELr~~~~eLEk~r~~ 113 (496)
+-|..|+.| |-+|.+|.+.+..--.-...+++|++++.++++-+ .+++.++++...+++.++..
T Consensus 5 ~~L~~L~~L-Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~r 75 (256)
T 3na7_A 5 THLKQLIEI-SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAK 75 (256)
T ss_dssp HHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777 44566655444333333445555555444444443 34444444444444444433
No 6
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=78.06 E-value=3.8 Score=33.58 Aligned_cols=51 Identities=25% Similarity=0.381 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 010974 49 DALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREA 103 (496)
Q Consensus 49 eal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~ 103 (496)
++.-.+-.|+..+.-++.| ...+...|++||.+|.+-++.|+.||.||...
T Consensus 16 ~~mgti~eLq~~L~~K~eE----Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 16 EGRGSLRDLQYALQEKIEE----LRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp ---CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455555555444332 33455569999998888888888888777543
No 7
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.75 E-value=9.9 Score=34.83 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=58.1
Q ss_pred HhhHHHHHHHHHHHhhHHHHHHHHHH----HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHH
Q 010974 19 LNTAKEAAARIMVSERKTIRYQQELF----AAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVK 94 (496)
Q Consensus 19 lntaKEaAaRvm~aErka~~~~qel~----~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~ 94 (496)
--.+.|.+.|. .+|+.-..+++||. +-=+||=.| +.+|-+..-.-.+|.+.|++||.+++.++.
T Consensus 65 ~~l~~E~~~R~-~aE~~~~~ie~ElEeLTasLFeEAN~M-----------Va~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 65 EDIAKENELRT-KAEEEADKLNKEVEDLTASLFDEANNM-----------VADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554 45666667777774 234455443 445666666667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 010974 95 DLRADLREAQDELERATYNE 114 (496)
Q Consensus 95 ~Lr~ELr~~~~eLEk~r~~q 114 (496)
.|+..|..++.-+++|.+.+
T Consensus 133 ~lq~ql~~LK~v~~~m~~e~ 152 (154)
T 2ocy_A 133 TLTLQLKNLKKVMHSLDNES 152 (154)
T ss_dssp HHHHHHHHHHHTTSCCC---
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 99999999988777665543
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.30 E-value=28 Score=44.18 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=6.0
Q ss_pred hhhhhhhhccCC
Q 010974 215 IHAFERNILEGN 226 (496)
Q Consensus 215 IrAle~nl~~g~ 226 (496)
++.||..+.-|.
T Consensus 2220 ~~~LE~ai~fG~ 2231 (3245)
T 3vkg_A 2220 MKNLESALRFGC 2231 (3245)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 445555554444
No 9
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=74.83 E-value=5.9 Score=32.31 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 61 LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 61 ~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
++.+|.+.|+...-|..-|++|-..+-.-+..|..|+..|+.+...|..+.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777666666666777766666666666666666665555554433
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.81 E-value=52 Score=41.94 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHH
Q 010974 68 AQVVSLCQQRKIDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 68 aE~~sl~~qrki~ELeaqL~eaed~v~~Lr~EL 100 (496)
||......+.+.++++++|.+.|+.|+.|+.++
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~ 2051 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEY 2051 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444433
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.92 E-value=41 Score=33.94 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=16.0
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
+++++||.++.+.++.+..|+.|+.....+|.+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554444444443
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=70.67 E-value=71 Score=29.98 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=35.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
....++...|..-+..-.+|+++++.+.+++..+..++.+|.....+++...
T Consensus 101 ~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 152 (256)
T 3na7_A 101 IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEV 152 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666677777777777777777777777766666665443
No 13
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.01 E-value=42 Score=29.91 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=25.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 83 EAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 83 eaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
++|+.+.++-|.+|-.+|+.+-.|+|.+|..-
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566666789999999999999999998764
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.75 E-value=98 Score=31.24 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=27.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 57 LKQMLDAKVNEAQVVSLCQQRKIDELEAQLGE-------AEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 57 LK~~~daki~EaE~~sl~~qrki~ELeaqL~e-------aed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
..+-+..+..+.|..-...++.++++.+++.. .|..+..-+..+.+.+.|++.++....+
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444445555555555554 4444444444445555555555544444
No 15
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=69.36 E-value=24 Score=28.59 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=25.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 54 LLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 54 LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
|...+..++..+.|+|-.- +.++..++.+|..|..+|.+++.+++.
T Consensus 6 l~~~~~sLE~~l~e~e~~~----------~~~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 6 LKGTNESLERQMREMEENF----------AVEAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777432 233444455555555555555555544
No 16
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=69.07 E-value=69 Score=29.21 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=11.0
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 010974 27 ARIMVSERKTIRYQQELFA 45 (496)
Q Consensus 27 aRvm~aErka~~~~qel~~ 45 (496)
-|+-++|.|...++.+|.+
T Consensus 35 ERae~aE~k~~eLEeeL~~ 53 (155)
T 2efr_A 35 ERAELSEGKSAELEEELKT 53 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665554
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=69.05 E-value=21 Score=40.49 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=5.3
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLR 101 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr 101 (496)
+++|+.+|.+.++.+.+|..+++
T Consensus 929 l~ele~elee~ee~l~el~~e~~ 951 (1184)
T 1i84_S 929 LHEMEARIEEEEERSQQLQAEKK 951 (1184)
T ss_dssp HHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 18
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=68.39 E-value=25 Score=29.01 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 62 DAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 62 daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
+.++.-.|...-...+-.-+|.-||...+.=|+.||-.+.+...+|+++...+..
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444443334445566788888888889999999999999999999887764
No 19
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=67.56 E-value=17 Score=29.69 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=31.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 010974 59 QMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQD 105 (496)
Q Consensus 59 ~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~ 105 (496)
|.+..|+.++|...-.=..++..||.+|..++.-=..++.||+.+..
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888776666666777777777766666666666666543
No 20
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=67.52 E-value=31 Score=30.20 Aligned_cols=58 Identities=28% Similarity=0.316 Sum_probs=32.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 56 RLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 56 RLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
+||+-++.-..|+-..-..=..+|-+||++|.+....+...++|...++.+|+.++..
T Consensus 26 ~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 26 GLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445566666666666655556666666666666655433
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.15 E-value=25 Score=30.34 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=16.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 84 AQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 84 aqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
.++..++.+|..|..+|++++.+++..
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777666666553
No 22
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=63.99 E-value=48 Score=29.68 Aligned_cols=75 Identities=24% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhH
Q 010974 1 MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKID 80 (496)
Q Consensus 1 MadSekl~ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ 80 (496)
|.|.+++.-|....-+.. .+|++|--..--+.||...++.+|..+.+-|-.. ..+|.
T Consensus 48 ~~deEr~~~lE~qLkeak-~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~a----------------------E~k~~ 104 (147)
T 2b9c_A 48 QKDEEKMEIQEIQLKEAK-HIAEDADRKYEEVARKLVIIESDLERAEERAELS----------------------EGKCA 104 (147)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHH
T ss_pred cccHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHH
Q ss_pred HHHHHhhhhHHHHHHHHH
Q 010974 81 ELEAQLGEAEDIVKDLRA 98 (496)
Q Consensus 81 ELeaqL~eaed~v~~Lr~ 98 (496)
+||.+|...-+.+.+|.+
T Consensus 105 eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 105 ELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHH
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.40 E-value=58 Score=27.90 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=18.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 85 QLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 85 qL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
++..++.+|..|..+|++++.+++..
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45556677777777777777777654
No 24
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=62.23 E-value=61 Score=30.50 Aligned_cols=39 Identities=36% Similarity=0.348 Sum_probs=31.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 80 DELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 80 ~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
.|||++|..++...++|+..+.++..|++..+....+..
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888888888888888887765544
No 25
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=61.31 E-value=13 Score=29.87 Aligned_cols=38 Identities=8% Similarity=0.178 Sum_probs=25.4
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
...|.+||.++.+.+....+|..|-..++..++.++..
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777666666666666665543
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.99 E-value=29 Score=26.42 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=31.7
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
....+++||.+....+..-.+|+.++..++.|+..++.-
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344688888888888888899999998888888887654
No 27
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=56.57 E-value=35 Score=32.35 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=29.9
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
+...++.++++..|+.-+..++.+|+.++.+|+.++...
T Consensus 114 ~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 114 LDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNL 152 (369)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777888888888888888888888888877664
No 28
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.39 E-value=4.4 Score=36.55 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH----hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHH
Q 010974 24 EAAARIMVSERKTIRYQQELFA----AKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRAD 99 (496)
Q Consensus 24 EaAaRvm~aErka~~~~qel~~----~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~E 99 (496)
|.+.| ..+|..-..+++||.. -=+||=.| +.+|-+..-.-.+|.+.|++||.+++.++..|+..
T Consensus 58 E~~~R-~~aE~~~~~ie~ElE~LTasLFeEAN~M-----------Va~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~Q 125 (135)
T 2e7s_A 58 ENELR-TKAEEEADKLNKEVEDLTASLFDEANNL-----------VADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQ 125 (135)
T ss_dssp TTSHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHH-----------HHHTTHHHHHHHHHHHHHHHTTTHHHHCC------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334 3456666667777642 33444433 45555555566789999999999999999999999
Q ss_pred HHHHHHHHH
Q 010974 100 LREAQDELE 108 (496)
Q Consensus 100 Lr~~~~eLE 108 (496)
|+.++.-++
T Consensus 126 L~~LK~v~~ 134 (135)
T 2e7s_A 126 LKNLKKVMH 134 (135)
T ss_dssp ---------
T ss_pred HHHHHHHhc
Confidence 998876554
No 29
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=54.15 E-value=36 Score=28.19 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 010974 60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQ 104 (496)
Q Consensus 60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~ 104 (496)
-+..|+.++|...-.=..++..||.+|.+++.-=..++.||+++.
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777776666566666666666666655556666666554
No 30
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=54.11 E-value=40 Score=27.87 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=40.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 010974 38 RYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREA 103 (496)
Q Consensus 38 ~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~ 103 (496)
.|+++...+-++.-+.|-+|...- .| .....|.+.|..|.||+++|..+..|++.+
T Consensus 5 ~YE~df~~~~~~i~~~l~~~~~~~------ge----~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 5 SYESDFKTTLEQAKASLAEAPSQP------LS----QRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSC------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC------hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 478888888888777776664111 11 223357888999999999999999988887
No 31
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=53.87 E-value=1.6e+02 Score=28.27 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH----------HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 48 EDALRMLLRLKQMLDAKVNEAQVVSLCQ----------QRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 48 eeal~~LlRLK~~~daki~EaE~~sl~~----------qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
...+..|-+.|..++..-.|+|...... ++.++-+++++..+...+...+.+.+..-..+..++
T Consensus 153 ~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~ 226 (350)
T 3aco_A 153 AKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGT 226 (350)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777776554422 344555666666666666555555554444444443
No 32
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.95 E-value=80 Score=27.61 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=54.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 52 RMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 52 ~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
.++-+||.-++.-..|-|..-...|+-|..|+.|+.+.|.-+..=|.+.+.+..|.+.+|.....
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999988888888888888888888888888866543
No 33
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.83 E-value=32 Score=26.64 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=23.3
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
..++++|+.++.+.+....+|+.++..+..|+..++
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666777666666666666666666666554
No 34
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=52.09 E-value=61 Score=34.22 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=42.7
Q ss_pred HhHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010974 45 AAKEDALRML-LRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQL 117 (496)
Q Consensus 45 ~~Keeal~~L-lRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~ 117 (496)
-+..+|=+.| |||.+...-.+.+. +..+++|++++.+.++++++-..-.+-..+||+.+++.-..+
T Consensus 397 lse~Qa~aIl~mrL~rLt~le~~kl-------~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~ 463 (470)
T 3ilw_A 397 IDEIQAQAILDMQLRRLAALERQRI-------IDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDD 463 (470)
T ss_dssp CCHHHHHHHHTCBGGGGSHHHHHHH-------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHhHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4566666655 67766654333222 234567777777777788887777777888888887775544
No 35
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=51.93 E-value=6.8 Score=28.07 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.6
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~EL 100 (496)
++||+.|+-|+..||+-+..|+.+|
T Consensus 10 KkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 10 RRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999888766
No 36
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=51.62 E-value=35 Score=26.27 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=30.9
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.+..|++|+.+....+..-..|+.|+..+..|+..+..-
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688888888888888888888888888888777654
No 37
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=51.34 E-value=31 Score=28.03 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=34.2
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
.||.+||.+|--.+++|.+|-..+-+-+.++++++....
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999998888888886543
No 38
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.14 E-value=18 Score=28.18 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=19.5
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
.+..+++||.++...+..-..|+.|+..++.+|
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777766666655555555555555444
No 39
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=49.75 E-value=1.7e+02 Score=27.39 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH----------HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 47 KEDALRMLLRLKQMLDAKVNEAQVVSLCQ----------QRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 47 Keeal~~LlRLK~~~daki~EaE~~sl~~----------qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
....+..|-+.|..++..-.|+|...... ++.++-+++++..+...+...+.+.+..-..+..++
T Consensus 152 ~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~ 226 (312)
T 3abh_A 152 WAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGT 226 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44556667788888888888877654321 234455555666666666555555554444444443
No 40
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=49.74 E-value=44 Score=36.99 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=56.0
Q ss_pred HHHHHHHHHHH--HHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHhhhHH
Q 010974 5 EKLMALKKAYA--DIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRML-LRLKQMLDAKVNEAQVVSLCQQRKIDE 81 (496)
Q Consensus 5 ekl~ALkkAya--diilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~L-lRLK~~~daki~EaE~~sl~~qrki~E 81 (496)
+.|++|.+||. |-+..+-..+.- .| ..+...+.-+..||=+.| |||.+..--.+.+. +...+|
T Consensus 348 hiLegl~ia~~~iDeVI~iIR~s~~------~k-~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl-------~~E~~e 413 (716)
T 1zvu_A 348 HILEGLLVAFLNIDEVIEIIRNEDE------PK-PALMSRFGLTETQAEAILELKLRHLAKLEEMKI-------RGEQSE 413 (716)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHSSS------HH-HHHHHSTTCCTTHHHHHHTCCGGGGSHHHHHHH-------HHHHHH
T ss_pred HHHHhHHHHHhhHHHHHHHHHhcCc------hH-HHHHHhcCCCHHHHHHHHhhHHHHhhhhHHHHH-------HHHHHH
Confidence 45677788875 323333332211 11 122222223344554444 56666543332222 234566
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 010974 82 LEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLD 119 (496)
Q Consensus 82 LeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l~ 119 (496)
|++++.+.++|+++-..=++-...||..+++.-..++.
T Consensus 414 L~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd~RR 451 (716)
T 1zvu_A 414 LEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 451 (716)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 77777777778887777777788888888888766653
No 41
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=49.12 E-value=43 Score=28.01 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=39.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 010974 37 IRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREA 103 (496)
Q Consensus 37 ~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~ 103 (496)
..|+++....-.+.-+.|-+|...... -.....|.+.|..|.||+++|..+..|++.+
T Consensus 18 e~YE~df~~l~~~i~~kl~~i~~~~~~---------e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 18 EKLHEIFRGLLEDLQGVPERLLGTAGT---------EEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457788877777776666665322110 1123458899999999999999988887754
No 42
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=48.93 E-value=14 Score=36.15 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=18.5
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
+.++.|++|..-..+.+..||.||.+++.||++++
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444545444445555555555555555555544
No 43
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=48.69 E-value=1e+02 Score=24.59 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHH
Q 010974 35 KTIRYQQELFAAKEDALRMLLRLKQMLDA-KVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLR 101 (496)
Q Consensus 35 ka~~~~qel~~~Keeal~~LlRLK~~~da-ki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr 101 (496)
|-..+..++-.+.+.|-.+--.|+..-.. .-.|.|+.+| ++||.-||.+|..+++-+.+....|.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L--~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVAL--QKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666655555555443322 2334555544 67888888888777776555554443
No 44
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=48.22 E-value=86 Score=34.62 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=27.5
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
..++||++++.+.++++++-..=.+-..+||+.+++.-..++
T Consensus 644 ~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~R 685 (692)
T 2xcs_B 644 AEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDR 685 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 445666677777777777755555667777777777655443
No 45
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=46.69 E-value=27 Score=29.11 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=43.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHH---------------HH
Q 010974 39 YQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLR---------------EA 103 (496)
Q Consensus 39 ~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr---------------~~ 103 (496)
|+++....-.+.-+.|-+|... .--.....|.+.|..|.||+++|..+..|++ ..
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~----------~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Y 79 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRL----------PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSY 79 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGS----------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHH
Confidence 6777777777777666665431 0111234588889999999999988777754 44
Q ss_pred HHHHHHHHHhhhh
Q 010974 104 QDELERATYNEKQ 116 (496)
Q Consensus 104 ~~eLEk~r~~q~q 116 (496)
+.+|.+++....+
T Consensus 80 k~dL~~lk~elk~ 92 (102)
T 1vcs_A 80 KQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666665554433
No 46
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.42 E-value=43 Score=38.16 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=13.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 84 AQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 84 aqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
.++++++..|..|..|+...+.+++++.
T Consensus 977 ~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 977 EEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554444
No 47
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.13 E-value=59 Score=26.62 Aligned_cols=25 Identities=8% Similarity=0.318 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 89 AEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 89 aed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
-+.+|.+|..+|.+...++..+++.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444444443
No 48
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=42.51 E-value=1.3e+02 Score=26.77 Aligned_cols=92 Identities=26% Similarity=0.327 Sum_probs=44.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHhHHHHHHHHHH-----HHhhhhhHHHHHHHHHHHH-HhhhHHHHHHhhhhHHHH------
Q 010974 26 AARIMVSERKTIRYQQELFAAKEDALRMLLR-----LKQMLDAKVNEAQVVSLCQ-QRKIDELEAQLGEAEDIV------ 93 (496)
Q Consensus 26 AaRvm~aErka~~~~qel~~~Keeal~~LlR-----LK~~~daki~EaE~~sl~~-qrki~ELeaqL~eaed~v------ 93 (496)
.+.|--.|.+.+.++..|...+++..+-... +.| .+-..++||+.-|.. +.+|+||+.++-+++.-|
T Consensus 12 ~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~q-sele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~~e~~ 90 (125)
T 2pms_C 12 QAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQ-SKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEEN 90 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC------------CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455567788888888877776655321000 111 233355555544433 335555554444333332
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 94 --------KDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 94 --------~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
.-|..-|...+.||++.+.-+...+
T Consensus 91 ~~~~~~~~e~le~~la~KkAEleKtqa~Ld~al 123 (125)
T 2pms_C 91 NNVEDYFKEGLEKTIAAKKAELEKTEADLKKAV 123 (125)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2334445556666766665544443
No 49
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=42.20 E-value=58 Score=26.53 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=23.3
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 58 KQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 58 K~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
+..++..+.|+|-. ++.++..++.+|..|..||.+++.+++..
T Consensus 12 ~~~Le~~l~e~E~~----------~~~~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 12 LAAKEAKLRDLEDS----------LARERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp CTTHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666642 23344555556666666666665555543
No 50
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.12 E-value=55 Score=26.47 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=19.7
Q ss_pred hhHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEA------EDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 78 ki~ELeaqL~ea------ed~v~~Lr~ELr~~~~eLEk~ 110 (496)
+|.+|+++|... -+.+..|..+|..+..+|+.+
T Consensus 37 ~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 37 KLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666542 134666666666666666654
No 51
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=41.96 E-value=35 Score=28.64 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 47 KEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 47 Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
++--+.-|-..+..++..+.|.|- .+..++...+.+|..|..||++++.+++.-
T Consensus 10 ~~~~~~~Lq~~~~~LE~~l~e~E~----------~~~~e~~~~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 10 RENLYFQGQKESRACLERIQELED----------LLAKEKDNSRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp --------CCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344455555555553 223345556666666666666666666553
No 52
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=41.88 E-value=11 Score=39.90 Aligned_cols=90 Identities=11% Similarity=0.195 Sum_probs=14.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHH--------
Q 010974 25 AAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDL-------- 96 (496)
Q Consensus 25 aAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~L-------- 96 (496)
|-.-+.-+|++|..|+.++.-+.++|..+- +-.+-........+.....+...-+.|++++.+++-.|..|
T Consensus 354 ~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~-~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 432 (575)
T 2i1j_A 354 SQANLLEAQDMILRLEEQLRQLQAAKEELE-QRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKD 432 (575)
T ss_dssp HHHHHHHHHHC---------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456678888888888777777765321 11111111111112222222222334555555665555554
Q ss_pred ------HHHHHHHHHHHHHHHHhhh
Q 010974 97 ------RADLREAQDELERATYNEK 115 (496)
Q Consensus 97 ------r~ELr~~~~eLEk~r~~q~ 115 (496)
+.||..++..++++...+.
T Consensus 433 ~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 433 SETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp ---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444433
No 53
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=41.55 E-value=47 Score=28.02 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=32.1
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
.+|++.|+.++...+..+..++..+..+...|+++..
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999988887653
No 54
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=41.32 E-value=3e+02 Score=27.93 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH----------HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 48 EDALRMLLRLKQMLDAKVNEAQVVSLCQ----------QRKIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 48 eeal~~LlRLK~~~daki~EaE~~sl~~----------qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
.+.+..|.+.|..++..-.|+|.+.... ++.++-+++++..+...+...+.+.+..-..+
T Consensus 146 ~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~ 215 (486)
T 3haj_A 146 AKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 215 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777666553221 23344445555555444444444444333333
No 55
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=41.27 E-value=32 Score=26.29 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=27.8
Q ss_pred HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
....|++||.++...+..-..|+.++..+..|+..++.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888888877777766543
No 56
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.17 E-value=23 Score=36.23 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=24.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHH
Q 010974 57 LKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 57 LK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~EL 100 (496)
|++.+..+|.|.|..-...+..+..|++|.....+-+..|+.|+
T Consensus 19 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~ 62 (405)
T 4b4t_J 19 IKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDEL 62 (405)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777666666667777776665544444444333
No 57
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=41.14 E-value=1.3e+02 Score=25.30 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=21.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 82 LEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 82 LeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
++.+|.+|+-.-.+|..|++.++.+++.++.
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456666666777777888888777777653
No 58
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.13 E-value=1.9e+02 Score=25.59 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=16.9
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
+++++|++++.+.+.-+-+|+.||..++-++|.++
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544455555555444444444444
No 59
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=40.83 E-value=82 Score=29.50 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=24.1
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
+...++.++++..++.-+..++.+|+.++..|+.++..
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~ 150 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN 150 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666667777777666666655443
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.56 E-value=2.8e+02 Score=30.15 Aligned_cols=35 Identities=6% Similarity=0.074 Sum_probs=23.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 84 AQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 84 aqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
.+|.-+|.+|++++.+++++.--..-..-.|.-++
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsC 165 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSC 165 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45555666999999999987655554444444444
No 61
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=40.04 E-value=40 Score=25.63 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=17.3
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+++||.+ |..|..|-..+..+++.++.
T Consensus 24 ~~~LE~~-------v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENR-------VAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 7777775 55666666666666666554
No 62
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=39.81 E-value=31 Score=33.84 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=38.2
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
-.++.+|+.|+..++-....|..+|++++.||++++....+..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3478899999999999999999999999999999998876544
No 63
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=38.01 E-value=56 Score=28.63 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=27.3
Q ss_pred HHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 73 LCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 73 l~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
-.|.++|.+|++++++++. .|+..+++....|++++.-
T Consensus 88 e~Q~~ri~~L~~E~~~~~~---el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 88 EEQLRKIDMLQKKLVEVED---EKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4688999999998888764 5566666666666666554
No 64
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.10 E-value=67 Score=24.55 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=17.5
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
+.+.-|-++-+...+...+-|.+|..++.+|+++
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444555555555555555555554
No 65
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=36.87 E-value=79 Score=23.41 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=20.3
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
+..|+..+.+..+.+..++.++..+...|.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l 42 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKL 42 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666666665555555555444
No 66
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=36.49 E-value=49 Score=25.73 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=26.2
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
|-+||+.+...|.||..+..|+.+...+||..
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~ 39 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATS 39 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45678888888888888888888888888865
No 67
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=36.34 E-value=54 Score=31.17 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=24.1
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ 116 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q 116 (496)
.++.|+++|.+++.-+.+|+..+.|++++.+..|+--.+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666665543
No 68
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=36.29 E-value=68 Score=24.95 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=0.0
Q ss_pred HhhhHHHHHH-------hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQ-------LGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 76 qrki~ELeaq-------L~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
+.|++||..+ |+.+..-|.+||-.++.++.||+-++
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 69
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=36.01 E-value=63 Score=29.09 Aligned_cols=46 Identities=26% Similarity=0.280 Sum_probs=32.2
Q ss_pred HHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 010974 73 LCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDEQ 121 (496)
Q Consensus 73 l~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l~~~ 121 (496)
-.|.++|.+|++++.+++. .|+..+++....|++++.-....-++.
T Consensus 88 eeQ~~ri~~Le~E~~~~~~---el~~~v~eae~ll~~v~~~l~~ia~~~ 133 (151)
T 1yke_B 88 EEQLRKIDMLQKKLVEVED---EKIEAIKKKEKLLRHVDSLIEDFVDGI 133 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999998888764 566666777777777766655444333
No 70
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.29 E-value=35 Score=27.64 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=21.7
Q ss_pred HHHHHHhhhHHHHHHhhhhHHHHHHHHHHH
Q 010974 71 VSLCQQRKIDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 71 ~sl~~qrki~ELeaqL~eaed~v~~Lr~EL 100 (496)
.|-.+||.++.|++++..+|.-|..|..+|
T Consensus 16 LSykeqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 16 LSYKLQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777777666
No 71
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=34.33 E-value=1.5e+02 Score=27.21 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
.|.+.|.|+++.++ .|.++...+-+.+++.-++.|+.++..+..++.++
T Consensus 58 ~~~~~~le~~~~~l--~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKL 106 (146)
T 2xnx_M 58 YNRANVLEKELEAI--TREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKL 106 (146)
T ss_dssp TTTHHHHTTTTTTH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhhHHHH--HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 44567778877777 35566666767777777777777777777776665
No 72
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.22 E-value=1.1e+02 Score=31.10 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=12.5
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDE 106 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~e 106 (496)
+.+|+..++.++.-+.+|...|+....+
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 46 (403)
T 4etp_A 19 IAALKEKIKDTELGMKELNEILIKEETV 46 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 73
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=33.54 E-value=58 Score=26.16 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=17.6
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
+.+|+.....+..-...||.++..+..||+.
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445556666666666666654
No 74
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.16 E-value=3.6e+02 Score=26.51 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=12.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 84 AQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 84 aqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
+.++|.|.-|..|-.+|+....+.|.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 75
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.76 E-value=81 Score=24.12 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=27.7
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.+..+|.+|+..+..--..|-..|++++++|++++..
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777777777788888888888887654
No 76
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.75 E-value=73 Score=26.54 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=12.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Q 010974 80 DELEAQLGEAEDIVKDLRADLRE 102 (496)
Q Consensus 80 ~ELeaqL~eaed~v~~Lr~ELr~ 102 (496)
+.||++++.|=|+|.-||.|+.+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieE 31 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEE 31 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655555433
No 77
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.69 E-value=64 Score=24.96 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=23.7
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
+.++|+.+-.+.+..|..|+.|+.++...|..
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666667777888888888888877653
No 78
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.17 E-value=54 Score=26.45 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=20.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974 80 DELEAQLGEAEDIVKDLRADLREAQDELERATYNEK 115 (496)
Q Consensus 80 ~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~ 115 (496)
+++.+.|..=+..|.+|..+|+...+++..+|+.+-
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555667777777777777766666543
No 79
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=30.88 E-value=87 Score=27.50 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=14.6
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
|++|-++|..||..++.-+.+..+.+.++++
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444444444444444444
No 80
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=30.27 E-value=68 Score=27.88 Aligned_cols=38 Identities=8% Similarity=0.309 Sum_probs=33.3
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
.+||+.|+.++...+..+..++..+..+...|+++...
T Consensus 104 ~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 104 EKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999998887654
No 81
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.24 E-value=2e+02 Score=24.57 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=19.4
Q ss_pred HHHhhhhhHHHHHHHHHHH----HHhhhHHHHHHhhhhHHHH
Q 010974 56 RLKQMLDAKVNEAQVVSLC----QQRKIDELEAQLGEAEDIV 93 (496)
Q Consensus 56 RLK~~~daki~EaE~~sl~----~qrki~ELeaqL~eaed~v 93 (496)
..+..++..|.|+|-.--. -|.+|.+||++|..+..-+
T Consensus 57 ~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 57 KQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3456666666666543222 2445555555555544333
No 82
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=29.64 E-value=2.6e+02 Score=23.75 Aligned_cols=9 Identities=33% Similarity=0.261 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 010974 6 KLMALKKAY 14 (496)
Q Consensus 6 kl~ALkkAy 14 (496)
|+.+|+.-|
T Consensus 7 ~~~~l~~~~ 15 (284)
T 1c1g_A 7 KMQMLKLDK 15 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 334444433
No 83
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.58 E-value=2.3e+02 Score=29.17 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 41 QELFAAKEDALRMLLRLKQMLDAK-------VNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 41 qel~~~Keeal~~LlRLK~~~dak-------i~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
++|.+.+.++-.++--|+-+.--. +..+-..|-.-..+|..||+.+...+..|..|+.-|...+..|+.+...
T Consensus 48 ~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~ 127 (409)
T 1m1j_C 48 QQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQK 127 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 466667776665555444442110 1111112223344555556655555556666665555555555555443
No 84
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=29.37 E-value=2.6e+02 Score=23.73 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhH-----------HHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 52 RMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAE-----------DIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 52 ~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eae-----------d~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
+.|||=..=+.-++.=+...-..--+-+++|+.++.+++ +.|..|+-||....+||..+..+.
T Consensus 4 i~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l 77 (107)
T 2no2_A 4 ADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSL 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 85
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=29.09 E-value=2e+02 Score=30.76 Aligned_cols=42 Identities=24% Similarity=0.203 Sum_probs=27.1
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
..+++|++++.+.++++++-..=.+-..+||+.+.+.-..++
T Consensus 461 ~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~R 502 (514)
T 2inr_A 461 GEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSER 502 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345566666666666766655555667778888777755544
No 86
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=29.06 E-value=64 Score=27.60 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=21.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 80 DELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 80 ~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
++|..++......+..|+..+.....||+..|+
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455555555566667777777777777777663
No 87
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.59 E-value=1.1e+02 Score=30.78 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHH
Q 010974 66 NEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRA 98 (496)
Q Consensus 66 ~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ 98 (496)
..-|..-+.+...|..|+++|...+..|..|..
T Consensus 15 ~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 15 RILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566666655554444444433
No 88
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=28.43 E-value=3.8e+02 Score=25.24 Aligned_cols=66 Identities=8% Similarity=0.138 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHH----------HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 45 AAKEDALRMLLRLKQMLDAKVNEAQVVSLC----------QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 45 ~~Keeal~~LlRLK~~~daki~EaE~~sl~----------~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
....+.+..|-+.|..++..-.|+|.+... ..+.++-+++++..++..+...+.+.+..-..+...
T Consensus 141 k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~ 216 (337)
T 2x3v_A 141 KPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKT 216 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777888888888888887754321 123455566666666666665555555444444444
No 89
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=27.55 E-value=2.4e+02 Score=30.49 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=14.6
Q ss_pred cccCCChhhHHhhcCCccc
Q 010974 188 YFCNSSFASIVMRRKEPKL 206 (496)
Q Consensus 188 ~~~~~dlaSi~~r~KepEL 206 (496)
...+.+|.+.|.++|.+|+
T Consensus 419 s~~~~~ls~~me~Rkq~e~ 437 (551)
T 2b5u_A 419 SDADAALSSAMESRKKKED 437 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhcccchhh
Confidence 3455689999999998883
No 90
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=27.47 E-value=3e+02 Score=30.76 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=55.8
Q ss_pred HHHHHHHHHHH--HHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHhhhHH
Q 010974 5 EKLMALKKAYA--DIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRML-LRLKQMLDAKVNEAQVVSLCQQRKIDE 81 (496)
Q Consensus 5 ekl~ALkkAya--diilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~L-lRLK~~~daki~EaE~~sl~~qrki~E 81 (496)
+.|++|..||. |-+..+-..+.. .|+ .+...+.-+..+|-+.| |||.++.--.+.+.+ ..++|
T Consensus 642 hiLegl~ia~~~iD~vI~iIr~s~~------~k~-~L~~~f~lse~qa~aIl~mrL~rLt~le~~kl~-------~E~~~ 707 (767)
T 2xkj_E 642 HILAGLLIAYLDIDTVIRIIREEDQ------PKP-VLMEHFNIDEIQAEAILELKLRHLAKLEEMEIR-------HEQDE 707 (767)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHCSS------HHH-HHHHHHTCCHHHHHHHHHSCHHHHHHCCHHHHH-------HHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHhccc------hHH-HHHHhcCCCHHHHHHHHHhHHHHhhhhHHHHHH-------HHHHH
Confidence 45677777773 333333322211 122 12233344556666655 477776554333322 34566
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 82 LEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 82 LeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
|++++.+.++|+++...=..-...||..+.+.-..++
T Consensus 708 l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~~yg~~R 744 (767)
T 2xkj_E 708 LSAKAAIIREQLENPESLKNLIISELKEDAKKFGDER 744 (767)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6666666677777776667777788888877766554
No 91
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.50 E-value=43 Score=24.80 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=15.7
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADL 100 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~EL 100 (496)
.|++|+.++...|..|..|+..|
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777776654
No 92
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.48 E-value=1.6e+02 Score=30.11 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=20.2
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
+.++++|+++....+..+..+..+|.....+..++-|..
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~ 54 (412)
T 3u06_A 16 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTV 54 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444444444443
No 93
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.04 E-value=2.9e+02 Score=25.90 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=10.1
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhHHH
Q 010974 58 KQMLDAKVNEAQVVSLCQQRKIDEL 82 (496)
Q Consensus 58 K~~~daki~EaE~~sl~~qrki~EL 82 (496)
-+.|+..+..+|.....-+.++..|
T Consensus 44 E~ELE~eL~~~Ek~~~~L~~~~~~L 68 (189)
T 2v71_A 44 EAELEAQLVQAEQRNRDLQADNQRL 68 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333
No 94
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=26.01 E-value=27 Score=26.26 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=14.6
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRA 98 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ 98 (496)
..+|++||+++.+.+..|..|+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777777777776666543
No 95
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=25.74 E-value=93 Score=28.88 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=25.7
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
+|++|+++|.++++ +++..+.|++++.+..|+-..+..
T Consensus 43 ~~~~l~~~l~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~ 80 (197)
T 1dkg_A 43 KVANLEAQLAEAQT---RERDGILRVKAEMENLRRRTELDI 80 (197)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888777765 355667777777777776654433
No 96
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.31 E-value=1.1e+02 Score=23.15 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=19.8
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
+.++|+.+-.+.+..|..|+.|+.++...|
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666667777777777766544
No 97
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=25.02 E-value=2.9e+02 Score=22.72 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 34 RKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 34 rka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
+|-..+..+.-++-+.|-.+=-.+|+. ..+...+|-.--.-++||.-||.+|..+++-+.+++..|......+..+
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~-e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A 84 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQA-EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 98
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.02 E-value=95 Score=26.01 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 010974 50 ALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDE 106 (496)
Q Consensus 50 al~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~e 106 (496)
||-.=+|=||.+--.+.-.--....-+.|..|.|++-.+.+.-|..|+.++++.+++
T Consensus 18 ALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 18 ALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344445556666555544444555566677777777777777778888888776543
No 99
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.67 E-value=1.4e+02 Score=24.24 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=21.6
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
..|++.++++.+.+.-+.+|+.++..+..+++.++..
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666555544
No 100
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=24.64 E-value=62 Score=27.33 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=14.6
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+...|++++. +|+.++++.+.||+.++.
T Consensus 8 ~~~~l~~~~~-------~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVE-------ELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHH-------HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHhC
Confidence 4455666544 445555555555555544
No 101
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.23 E-value=1.6e+02 Score=29.78 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 64 KVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 64 ki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
++.+.+.....-+++|+++++.+.+.+........+-|++..+|..++.+
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444444444455555555555555555555555555555555554433
No 102
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.08 E-value=80 Score=24.01 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=14.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 010974 81 ELEAQLGEAEDIVKDLRADLREAQDELE 108 (496)
Q Consensus 81 ELeaqL~eaed~v~~Lr~ELr~~~~eLE 108 (496)
-|.+.+.+.+..|..|+.++.+.+..|+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555555555555554
No 103
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=23.97 E-value=1.1e+02 Score=25.53 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010974 68 AQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE 114 (496)
Q Consensus 68 aE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q 114 (496)
.|...+..+.|+.-|+++|...|-+=+|...==+-.+-.||++|...
T Consensus 10 Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqad 56 (79)
T 1tu3_F 10 VEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQAD 56 (79)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566777889999999999999888887666677778888888653
No 104
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.31 E-value=98 Score=23.43 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 010974 65 VNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREA 103 (496)
Q Consensus 65 i~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~ 103 (496)
-..||..--.=|+.|+.||..|-........++.+|...
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344565555556777777777766666666666665543
No 105
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=23.21 E-value=2.4e+02 Score=24.33 Aligned_cols=90 Identities=14% Similarity=0.270 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHhhHHHHHHH-HHHH--hH---------HHHHHHHHHHHhhhhhHHHHHHHHHHHH---------Hhh
Q 010974 20 NTAKEAAARIMVSERKTIRYQQ-ELFA--AK---------EDALRMLLRLKQMLDAKVNEAQVVSLCQ---------QRK 78 (496)
Q Consensus 20 ntaKEaAaRvm~aErka~~~~q-el~~--~K---------eeal~~LlRLK~~~daki~EaE~~sl~~---------qrk 78 (496)
=+..|.|.+.=++-+--..|+. +|.. .+ ++.|..|..++..-+.-+.=.|+..+.. ...
T Consensus 17 ~~I~evA~~~gvs~~tLR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~ 96 (148)
T 3gpv_A 17 YTIGQVAKMQHLTISQIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDWSMEGDSTILHR 96 (148)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCGGGHHHH
T ss_pred eeHHHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcCCCCHHHH
Confidence 3566777777676665555554 2331 12 4455555555444333222222222222 122
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
.+-|++|+.+.+..|..|+.-+..+...++.
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544444444443
No 106
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.72 E-value=3.6e+02 Score=24.74 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010974 64 KVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELER 109 (496)
Q Consensus 64 ki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk 109 (496)
.|...+...-.-+++|..|+.-|.+=...+..|+.|+.-++.++..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~ 114 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNV 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445666666655555555555555555544444433
No 107
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=22.60 E-value=3.1e+02 Score=24.83 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=18.1
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 010974 77 RKIDELEAQLGEAEDIVKDLRADLREAQDELE 108 (496)
Q Consensus 77 rki~ELeaqL~eaed~v~~Lr~ELr~~~~eLE 108 (496)
..+++.++++..|+.-+..++.+|+.++..|+
T Consensus 98 ~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 98 QEYDQALADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666666555555566555554443
No 108
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.46 E-value=2.8e+02 Score=23.76 Aligned_cols=50 Identities=30% Similarity=0.189 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhh---------------------hHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974 64 KVNEAQVVSLCQQRKIDELEAQLGE---------------------AEDIVKDLRADLREAQDELERATYN 113 (496)
Q Consensus 64 ki~EaE~~sl~~qrki~ELeaqL~e---------------------aed~v~~Lr~ELr~~~~eLEk~r~~ 113 (496)
+|.+.|+..-.=.+++++||.+|.- |-......+.++..++.|.|++|-.
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556788889998876 1223345667777777777777654
No 109
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.40 E-value=7e+02 Score=26.59 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 46 AKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 46 ~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
+...+-..+-++..+++..+..++. .+++++++|...+..+..|+......+.+|.+...
T Consensus 335 ~~~~~~~~~~~l~~~i~~~l~~l~~-------~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~ 394 (695)
T 2j69_A 335 VRTLARLACNHTREAVARRIPLLEQ-------DVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRD 394 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS-------CSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555554443333 34444455555555555555444444444444443
No 110
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.00 E-value=1.1e+02 Score=23.26 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=19.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 82 LEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 82 LeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
||..-+..|.||+.||.|+-++..|.
T Consensus 22 lerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 22 LERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444567779999999998877653
No 111
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=21.64 E-value=1.5e+02 Score=25.39 Aligned_cols=38 Identities=32% Similarity=0.505 Sum_probs=28.2
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 010974 58 KQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLRE 102 (496)
Q Consensus 58 K~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~ 102 (496)
+...|+++.||.......+..+++|+. -|..||.||-+
T Consensus 59 qAe~DArLAeAka~~~Ka~~~~~el~~-------~I~~LrqEl~~ 96 (98)
T 4fm3_A 59 QAELDARLAESKVLTQKSKDQLGELDK-------SLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHC-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcC
Confidence 556799999998887777777776665 67778877743
No 112
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.26 E-value=3.1e+02 Score=21.72 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=15.5
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
.++.+..+..++.-|.+|+--++.+.++|+++-
T Consensus 29 l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 29 KKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555555443
No 113
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.23 E-value=3.9e+02 Score=22.92 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=14.1
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
++++|++|+.+.+.+...|..-+.+....+
T Consensus 89 ~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444444444444333
No 114
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=21.08 E-value=1.5e+02 Score=22.50 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.3
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
+..||+.+..+|.||..+..++.+...+++..
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~ 38 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERVAMTAEAC 38 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44567888888889998888888888888765
No 115
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.02 E-value=1.4e+02 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=11.9
Q ss_pred HHhhhHHHHHHhhhhHHHHHHH
Q 010974 75 QQRKIDELEAQLGEAEDIVKDL 96 (496)
Q Consensus 75 ~qrki~ELeaqL~eaed~v~~L 96 (496)
.|..|.+||++|..+..-+...
T Consensus 10 ~~~~i~~lE~eL~~~r~e~~~q 31 (74)
T 2xv5_A 10 SRRLLAEKEREMAEMRARMQQQ 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666665554444433
No 116
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.18 E-value=4.3e+02 Score=22.98 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 46 AKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 46 ~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
+|+|-+.-.|-|-. ++.-+|-..-..|....+..+++.+.++-|..|+.|=+++..|=+.-+.....||
T Consensus 31 SKqELIqEYl~LE~----~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~~~~~~ 99 (104)
T 3s9g_A 31 SKQELIKEYLELEK----SLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQERAPL 99 (104)
T ss_dssp CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred cHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCch
Confidence 34444444443332 2333333333334435566777888888999999999998888777766554444
No 117
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.05 E-value=2.6e+02 Score=26.13 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 66 NEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 66 ~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
-.||..--.-|+.|+.||..|..+...-..++.||...-.+|
T Consensus 131 ~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL 172 (175)
T 3mud_A 131 CYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666666677777777766555555555555554444333
Done!