Query 010974
Match_columns 496
No_of_seqs 26 out of 28
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 18:10:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010974.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010974hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcsa1 a.47.2.1 (A:8-96) Vesi 60.1 20 0.0014 27.7 8.1 69 39-117 3-86 (89)
2 d1qvra2 c.37.1.20 (A:149-535) 41.2 35 0.0026 31.9 8.1 20 91-110 313-332 (387)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 40.7 20 0.0015 28.1 5.4 37 76-112 94-130 (133)
4 d2efka1 a.238.1.4 (A:10-288) C 30.7 1.3E+02 0.0096 24.5 14.5 25 47-71 118-142 (279)
5 d1ykhb1 a.252.1.1 (B:2-130) RN 30.2 39 0.0029 27.6 5.7 36 74-112 88-123 (129)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 28.4 35 0.0026 25.4 4.7 35 76-110 51-85 (88)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 21.2 48 0.0035 24.1 4.1 30 78-107 48-77 (79)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 16.3 1E+02 0.0076 23.7 5.4 33 79-111 3-35 (133)
9 d2e50a1 d.305.1.1 (A:1-222) Pr 16.3 1.5E+02 0.011 25.4 7.0 46 69-118 22-67 (222)
10 d1nkpb_ a.38.1.1 (B:) Max prot 15.7 58 0.0043 23.8 3.5 33 79-111 49-81 (83)
No 1
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=60.12 E-value=20 Score=27.69 Aligned_cols=69 Identities=16% Similarity=0.324 Sum_probs=45.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHH---------------HHHH
Q 010974 39 YQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRAD---------------LREA 103 (496)
Q Consensus 39 ~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~E---------------Lr~~ 103 (496)
|+++.+..-.+.-+.|-++...- . -.....|.+.|.+|.||+++|..+..| ||..
T Consensus 3 YE~~y~~l~a~i~~kl~~i~~~~-g---------eerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Y 72 (89)
T d1vcsa1 3 YEQDFAVLTAEITSKIARVPRLP-P---------DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSY 72 (89)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSC-T---------TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-c---------hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56777777777666665554321 1 112356778888888998888876665 5666
Q ss_pred HHHHHHHHHhhhhh
Q 010974 104 QDELERATYNEKQL 117 (496)
Q Consensus 104 ~~eLEk~r~~q~q~ 117 (496)
+.+|.+++....+.
T Consensus 73 k~dl~~lk~elk~a 86 (89)
T d1vcsa1 73 KQEMGKLETDFKRS 86 (89)
T ss_dssp HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777665543
No 2
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=41.22 E-value=35 Score=31.94 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010974 91 DIVKDLRADLREAQDELERA 110 (496)
Q Consensus 91 d~v~~Lr~ELr~~~~eLEk~ 110 (496)
+.+.+|+.+|..++.+++.+
T Consensus 313 ~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 313 RKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555565555555544
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=40.70 E-value=20 Score=28.14 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=27.5
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
.+||++|+.++...+.-+..++..+.....+++++..
T Consensus 94 ~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~ 130 (133)
T d1fxkc_ 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888887777777777777777777776543
No 4
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.75 E-value=1.3e+02 Score=24.46 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH
Q 010974 47 KEDALRMLLRLKQMLDAKVNEAQVV 71 (496)
Q Consensus 47 Keeal~~LlRLK~~~daki~EaE~~ 71 (496)
..++...+.+.|..++....++|..
T Consensus 118 l~~~~~~~~k~k~~y~~~~~e~e~~ 142 (279)
T d2efka1 118 LENGFKQLENSKRKFERDCREAEKA 142 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777666666643
No 5
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.23 E-value=39 Score=27.55 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=23.9
Q ss_pred HHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974 74 CQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY 112 (496)
Q Consensus 74 ~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~ 112 (496)
.|.++|.+||+++++++. .|..-+++....|+++..
T Consensus 88 ~Q~~~i~~Le~E~~~~~~---el~~~v~e~e~ll~~i~~ 123 (129)
T d1ykhb1 88 EQLRKIDMLQKKLVEVED---EKIEAIKKKEKLMRHVDS 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 577899999999888764 344445555555555543
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.43 E-value=35 Score=25.35 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=20.8
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974 76 QRKIDELEAQLGEAEDIVKDLRADLREAQDELERA 110 (496)
Q Consensus 76 qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (496)
..-|..|++++..++.-+..|+.+...+..+|.++
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466666666666666666666665555555543
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.25 E-value=48 Score=24.09 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=14.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 010974 78 KIDELEAQLGEAEDIVKDLRADLREAQDEL 107 (496)
Q Consensus 78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eL 107 (496)
=|..|+.++...+.-+..|+.+.+..+..|
T Consensus 48 yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.30 E-value=1e+02 Score=23.69 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=20.5
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
++||.+|+...+.-+..|+.++...+..+....
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~ 35 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELE 35 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667766666666666666666655444443
No 9
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.29 E-value=1.5e+02 Score=25.41 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010974 69 QVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL 118 (496)
Q Consensus 69 E~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q~l 118 (496)
|.....+|+.|++|++ .|.-+..|..|..+...+||+--..+.+|+
T Consensus 22 ~~~~~~~~~~i~~L~~----iQ~e~~~l~~e~~~e~~~le~k~~~~~~pl 67 (222)
T d2e50a1 22 ETSEKEQQEAIEHIDE----VQNEIDRLNEQASEEILKVEQKYNKLRQPF 67 (222)
T ss_dssp TTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4444555666666554 344444555555555555555444444444
No 10
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.71 E-value=58 Score=23.80 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974 79 IDELEAQLGEAEDIVKDLRADLREAQDELERAT 111 (496)
Q Consensus 79 i~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r 111 (496)
|..|+.+++..+..+..|+.+...+..+++.++
T Consensus 49 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 81 (83)
T d1nkpb_ 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Done!