Query 010975
Match_columns 496
No_of_seqs 379 out of 3315
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738 AAA+-type ATPase [Post 100.0 2.5E-58 5.5E-63 460.6 22.6 381 99-493 103-491 (491)
2 KOG0730 AAA+-type ATPase [Post 100.0 6.1E-48 1.3E-52 408.2 12.7 270 201-489 419-692 (693)
3 KOG0739 AAA+-type ATPase [Post 100.0 2.8E-46 6.1E-51 363.0 20.9 298 194-494 111-439 (439)
4 COG1222 RPT1 ATP-dependent 26S 100.0 3.2E-47 7E-52 379.0 12.3 251 206-475 141-395 (406)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 5E-47 1.1E-51 396.1 12.7 291 197-492 492-790 (802)
6 KOG0736 Peroxisome assembly fa 100.0 7.9E-46 1.7E-50 395.2 12.5 283 208-491 664-952 (953)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 1.8E-43 3.8E-48 369.5 12.6 282 209-493 183-517 (802)
8 KOG0737 AAA+-type ATPase [Post 100.0 2.2E-42 4.8E-47 346.1 14.8 282 209-492 85-382 (386)
9 KOG0740 AAA+-type ATPase [Post 100.0 1.4E-39 3E-44 336.2 14.2 288 198-494 135-427 (428)
10 TIGR01243 CDC48 AAA family ATP 100.0 3E-39 6.5E-44 363.4 14.0 288 203-492 440-731 (733)
11 KOG0734 AAA+-type ATPase conta 100.0 4.1E-39 8.8E-44 332.4 11.1 241 211-473 299-542 (752)
12 COG1223 Predicted ATPase (AAA+ 100.0 1.4E-37 3E-42 297.8 11.5 247 209-478 114-361 (368)
13 COG0464 SpoVK ATPases of the A 100.0 5.6E-37 1.2E-41 331.0 14.5 257 205-486 231-492 (494)
14 KOG0728 26S proteasome regulat 100.0 1.3E-36 2.9E-41 289.7 10.9 253 205-477 136-393 (404)
15 KOG0735 AAA+-type ATPase [Post 100.0 1.8E-36 3.9E-41 321.1 11.9 239 202-443 652-894 (952)
16 KOG0727 26S proteasome regulat 100.0 3.2E-36 7E-41 287.3 12.2 249 208-475 147-399 (408)
17 KOG0726 26S proteasome regulat 100.0 2E-36 4.2E-41 293.7 8.6 248 207-474 176-428 (440)
18 PTZ00454 26S protease regulato 100.0 3.9E-36 8.4E-41 314.4 11.3 251 207-476 136-390 (398)
19 KOG0652 26S proteasome regulat 100.0 8.9E-36 1.9E-40 285.4 10.9 249 207-475 162-415 (424)
20 CHL00195 ycf46 Ycf46; Provisio 100.0 1.8E-35 3.8E-40 315.8 13.0 255 210-489 222-483 (489)
21 KOG0731 AAA+-type ATPase conta 100.0 8.2E-36 1.8E-40 324.5 10.1 245 209-473 304-554 (774)
22 PRK03992 proteasome-activating 100.0 2.3E-35 4.9E-40 309.0 12.2 255 206-479 121-379 (389)
23 KOG0729 26S proteasome regulat 100.0 2.9E-35 6.4E-40 282.6 7.0 265 181-473 150-419 (435)
24 PTZ00361 26 proteosome regulat 100.0 4.4E-34 9.5E-39 301.0 12.4 250 207-475 174-427 (438)
25 COG0465 HflB ATP-dependent Zn 100.0 1E-33 2.2E-38 303.5 12.0 245 208-472 142-390 (596)
26 TIGR01241 FtsH_fam ATP-depende 100.0 2.5E-33 5.4E-38 302.5 11.4 247 208-474 47-297 (495)
27 TIGR01242 26Sp45 26S proteasom 100.0 1.4E-32 3E-37 286.0 11.8 247 207-472 113-363 (364)
28 KOG0730 AAA+-type ATPase [Post 100.0 8.6E-32 1.9E-36 285.7 10.0 255 211-493 180-440 (693)
29 TIGR03689 pup_AAA proteasome A 100.0 6.1E-31 1.3E-35 280.9 14.3 272 205-492 171-500 (512)
30 CHL00176 ftsH cell division pr 100.0 2.5E-31 5.5E-36 292.0 11.0 243 210-472 177-423 (638)
31 KOG0651 26S proteasome regulat 100.0 2.4E-31 5.1E-36 260.6 8.8 250 206-474 122-375 (388)
32 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-30 2.5E-35 294.0 13.4 278 210-491 172-457 (733)
33 COG0466 Lon ATP-dependent Lon 100.0 8.2E-31 1.8E-35 280.5 7.1 297 147-476 269-588 (782)
34 KOG0741 AAA+-type ATPase [Post 100.0 9.1E-31 2E-35 270.5 5.3 266 210-479 213-497 (744)
35 KOG0732 AAA+-type ATPase conta 100.0 4.4E-30 9.6E-35 286.2 7.6 266 209-479 258-532 (1080)
36 PRK10733 hflB ATP-dependent me 100.0 2E-29 4.2E-34 279.2 12.6 245 211-475 147-395 (644)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 9E-29 1.9E-33 285.7 7.5 202 246-473 1627-1878(2281)
38 KOG2004 Mitochondrial ATP-depe 99.9 6.6E-28 1.4E-32 256.8 9.1 261 151-443 361-642 (906)
39 PLN00020 ribulose bisphosphate 99.9 1.6E-27 3.4E-32 241.7 9.4 167 246-417 145-330 (413)
40 TIGR00763 lon ATP-dependent pr 99.9 7.6E-23 1.7E-27 231.5 8.6 288 151-471 270-585 (775)
41 TIGR02881 spore_V_K stage V sp 99.9 2.5E-22 5.5E-27 199.8 7.0 177 215-402 5-196 (261)
42 CHL00181 cbbX CbbX; Provisiona 99.9 3.3E-22 7E-27 201.5 7.4 215 215-440 22-260 (287)
43 PRK10787 DNA-binding ATP-depen 99.9 4.8E-22 1E-26 223.7 7.5 289 151-473 272-583 (784)
44 KOG0742 AAA+-type ATPase [Post 99.8 3.7E-21 8.1E-26 194.6 10.8 248 172-428 303-586 (630)
45 TIGR02880 cbbX_cfxQ probable R 99.8 1.8E-21 3.8E-26 196.0 6.4 235 217-468 23-281 (284)
46 PF00004 AAA: ATPase family as 99.8 2.7E-21 5.9E-26 170.4 6.5 130 252-383 1-132 (132)
47 KOG0736 Peroxisome assembly fa 99.8 8.6E-21 1.9E-25 204.1 9.1 241 250-493 432-678 (953)
48 KOG0743 AAA+-type ATPase [Post 99.8 2E-20 4.3E-25 193.1 7.8 225 213-447 198-436 (457)
49 KOG0744 AAA+-type ATPase [Post 99.8 2.7E-20 5.9E-25 183.9 8.0 185 215-400 141-343 (423)
50 COG2256 MGS1 ATPase related to 99.8 2.8E-19 6.1E-24 181.9 12.4 232 209-490 17-256 (436)
51 TIGR02639 ClpA ATP-dependent C 99.8 3.8E-19 8.2E-24 200.5 14.1 200 199-420 165-386 (731)
52 KOG0735 AAA+-type ATPase [Post 99.8 9.8E-20 2.1E-24 194.5 7.6 252 216-491 408-671 (952)
53 PF05496 RuvB_N: Holliday junc 99.8 5.3E-20 1.2E-24 176.2 2.3 183 207-417 15-213 (233)
54 PRK11034 clpA ATP-dependent Cl 99.8 2.3E-18 5E-23 192.9 11.5 213 198-432 168-407 (758)
55 COG2255 RuvB Holliday junction 99.7 4.3E-18 9.3E-23 166.3 7.3 182 209-418 19-216 (332)
56 TIGR03345 VI_ClpV1 type VI sec 99.7 1.3E-17 2.9E-22 189.8 12.1 199 199-420 170-391 (852)
57 PRK10865 protein disaggregatio 99.7 2E-17 4.4E-22 188.7 13.3 187 198-407 160-364 (857)
58 TIGR00635 ruvB Holliday juncti 99.7 1.5E-17 3.3E-22 168.6 9.9 187 214-429 2-204 (305)
59 PRK00080 ruvB Holliday junctio 99.7 2.4E-17 5.3E-22 169.3 11.0 221 208-475 17-253 (328)
60 PRK14956 DNA polymerase III su 99.7 9.3E-17 2E-21 170.2 12.3 209 206-470 8-244 (484)
61 TIGR03346 chaperone_ClpB ATP-d 99.7 9E-17 1.9E-21 183.9 12.8 199 198-419 155-376 (852)
62 TIGR02902 spore_lonB ATP-depen 99.7 6.6E-17 1.4E-21 175.9 10.2 224 202-474 51-334 (531)
63 CHL00095 clpC Clp protease ATP 99.7 4.7E-17 1E-21 185.6 9.2 200 198-420 161-382 (821)
64 PRK14962 DNA polymerase III su 99.7 9.2E-17 2E-21 171.9 10.7 213 205-473 3-243 (472)
65 PRK12323 DNA polymerase III su 99.7 1.6E-16 3.6E-21 172.3 11.4 162 206-401 6-200 (700)
66 PRK07003 DNA polymerase III su 99.7 1.8E-16 3.8E-21 174.0 10.6 178 206-417 6-212 (830)
67 COG0542 clpA ATP-binding subun 99.7 2.1E-16 4.6E-21 174.4 10.2 192 198-410 152-359 (786)
68 PRK13342 recombination factor 99.7 3.7E-16 8E-21 165.5 11.4 211 206-473 2-220 (413)
69 PLN03025 replication factor C 99.6 5.5E-16 1.2E-20 158.7 11.3 163 206-403 3-177 (319)
70 PRK14958 DNA polymerase III su 99.6 4.6E-16 1E-20 168.1 11.2 214 206-475 6-247 (509)
71 COG0464 SpoVK ATPases of the A 99.6 4.6E-16 1E-20 168.3 10.2 238 236-491 4-246 (494)
72 KOG2028 ATPase related to the 99.6 1E-15 2.2E-20 153.7 11.1 159 205-397 127-294 (554)
73 PRK14960 DNA polymerase III su 99.6 7.8E-16 1.7E-20 167.4 11.1 163 206-402 5-195 (702)
74 PRK04195 replication factor C 99.6 9.5E-16 2.1E-20 165.4 10.0 170 205-403 3-179 (482)
75 PRK14961 DNA polymerase III su 99.6 1.5E-15 3.2E-20 158.2 10.9 162 206-401 6-195 (363)
76 KOG0989 Replication factor C, 99.6 7.9E-16 1.7E-20 151.9 7.9 182 204-417 24-222 (346)
77 PRK07994 DNA polymerase III su 99.6 2E-15 4.2E-20 165.9 11.2 162 206-401 6-195 (647)
78 PRK14949 DNA polymerase III su 99.6 1.5E-15 3.3E-20 169.5 9.9 167 206-400 6-194 (944)
79 PRK12402 replication factor C 99.6 2.1E-15 4.6E-20 154.6 10.1 169 205-402 4-202 (337)
80 PRK08691 DNA polymerase III su 99.6 3E-15 6.5E-20 164.1 11.0 163 206-402 6-196 (709)
81 PRK14964 DNA polymerase III su 99.6 3.1E-15 6.7E-20 160.0 10.9 164 206-403 3-194 (491)
82 PRK06645 DNA polymerase III su 99.6 3.4E-15 7.4E-20 160.7 11.2 164 205-402 10-205 (507)
83 PRK14959 DNA polymerase III su 99.6 5.6E-15 1.2E-19 161.2 11.7 163 205-401 5-195 (624)
84 PRK14951 DNA polymerase III su 99.6 7E-15 1.5E-19 161.2 10.6 163 206-402 6-201 (618)
85 PRK13341 recombination factor 99.6 9.2E-15 2E-19 163.4 11.4 217 206-472 18-247 (725)
86 PHA02544 44 clamp loader, smal 99.6 6.2E-15 1.3E-19 150.3 9.3 163 205-397 10-173 (316)
87 PRK14963 DNA polymerase III su 99.6 6.2E-15 1.3E-19 159.1 9.7 163 206-402 4-193 (504)
88 PRK07940 DNA polymerase III su 99.6 4.2E-15 9.1E-20 155.8 8.1 187 214-428 3-216 (394)
89 PRK05563 DNA polymerase III su 99.6 6.8E-15 1.5E-19 160.9 10.0 163 206-402 6-196 (559)
90 PRK14952 DNA polymerase III su 99.6 9.4E-15 2E-19 159.6 10.9 163 206-402 3-195 (584)
91 PRK14957 DNA polymerase III su 99.6 1E-14 2.2E-19 158.1 10.8 162 206-401 6-195 (546)
92 PRK07764 DNA polymerase III su 99.6 1.2E-14 2.6E-19 164.3 11.5 163 206-402 5-197 (824)
93 PRK14969 DNA polymerase III su 99.6 1.1E-14 2.3E-19 158.3 10.7 162 206-401 6-195 (527)
94 PRK14965 DNA polymerase III su 99.6 1.3E-14 2.7E-19 159.5 11.0 163 206-402 6-196 (576)
95 COG2204 AtoC Response regulato 99.6 3E-15 6.5E-20 157.8 5.7 241 186-452 103-377 (464)
96 COG3829 RocR Transcriptional r 99.6 9.2E-16 2E-20 161.8 1.8 232 209-471 238-497 (560)
97 PRK05896 DNA polymerase III su 99.6 1.9E-14 4E-19 156.4 11.8 163 205-401 5-195 (605)
98 PTZ00112 origin recognition co 99.5 2.8E-14 6.2E-19 157.5 12.7 225 211-475 750-1009(1164)
99 PRK05342 clpX ATP-dependent pr 99.5 1.3E-14 2.9E-19 152.8 8.3 132 217-348 72-214 (412)
100 TIGR02397 dnaX_nterm DNA polym 99.5 3.2E-14 7E-19 147.0 10.9 163 206-402 4-194 (355)
101 PRK07133 DNA polymerase III su 99.5 3E-14 6.5E-19 157.6 11.0 170 205-402 7-195 (725)
102 PRK06893 DNA replication initi 99.5 3.5E-14 7.6E-19 138.7 9.9 132 250-402 40-179 (229)
103 TIGR02928 orc1/cdc6 family rep 99.5 6.6E-14 1.4E-18 145.4 12.4 170 211-398 10-213 (365)
104 PRK06647 DNA polymerase III su 99.5 4.2E-14 9E-19 154.5 11.2 162 206-401 6-195 (563)
105 PRK00149 dnaA chromosomal repl 99.5 2.2E-14 4.8E-19 153.6 8.4 183 211-417 117-314 (450)
106 COG2812 DnaX DNA polymerase II 99.5 2.7E-14 5.9E-19 152.5 8.9 173 205-405 5-199 (515)
107 PRK00440 rfc replication facto 99.5 7.9E-14 1.7E-18 141.7 10.8 167 205-402 6-179 (319)
108 PRK05201 hslU ATP-dependent pr 99.5 2.8E-14 6E-19 148.6 7.4 245 217-472 16-432 (443)
109 PRK06305 DNA polymerase III su 99.5 1E-13 2.3E-18 148.1 11.6 162 206-401 7-197 (451)
110 TIGR00390 hslU ATP-dependent p 99.5 9.9E-14 2.1E-18 144.4 10.9 245 217-472 13-430 (441)
111 PRK08084 DNA replication initi 99.5 1.3E-13 2.9E-18 135.2 11.1 157 211-400 17-183 (235)
112 PRK14955 DNA polymerase III su 99.5 1.4E-13 3.1E-18 145.0 11.9 167 206-400 6-202 (397)
113 PF05673 DUF815: Protein of un 99.5 5.2E-14 1.1E-18 136.8 7.8 166 209-403 20-213 (249)
114 TIGR03420 DnaA_homol_Hda DnaA 99.5 7.1E-14 1.5E-18 135.3 8.6 204 213-469 12-225 (226)
115 PRK08451 DNA polymerase III su 99.5 6.9E-14 1.5E-18 150.9 9.4 163 206-402 4-194 (535)
116 PRK14970 DNA polymerase III su 99.5 1E-13 2.2E-18 144.5 10.4 168 206-402 7-185 (367)
117 PRK14953 DNA polymerase III su 99.5 1.3E-13 2.8E-18 148.4 11.4 164 205-402 5-196 (486)
118 TIGR02903 spore_lon_C ATP-depe 99.5 9.2E-14 2E-18 153.7 10.4 171 204-400 142-369 (615)
119 TIGR00362 DnaA chromosomal rep 99.5 4.9E-14 1.1E-18 148.9 7.1 155 249-417 136-302 (405)
120 PRK00411 cdc6 cell division co 99.5 1.3E-13 2.8E-18 144.7 10.1 168 212-398 26-221 (394)
121 PRK09111 DNA polymerase III su 99.5 2.2E-13 4.8E-18 149.6 11.5 171 204-402 12-209 (598)
122 PRK08903 DnaA regulatory inact 99.4 1.6E-13 3.4E-18 133.6 8.3 203 211-470 13-224 (227)
123 PRK14088 dnaA chromosomal repl 99.4 9.6E-14 2.1E-18 148.0 7.3 154 250-416 131-296 (440)
124 TIGR00382 clpX endopeptidase C 99.4 2.5E-13 5.4E-18 142.7 9.9 179 217-395 78-329 (413)
125 PRK14954 DNA polymerase III su 99.4 4.2E-13 9E-18 147.7 11.5 168 206-401 6-203 (620)
126 PRK14948 DNA polymerase III su 99.4 3.4E-13 7.3E-18 148.9 10.5 167 206-400 6-196 (620)
127 PRK08727 hypothetical protein; 99.4 4.5E-13 9.7E-18 131.3 9.5 130 250-401 42-179 (233)
128 PRK14950 DNA polymerase III su 99.4 6E-13 1.3E-17 146.7 10.8 162 206-401 6-196 (585)
129 PRK12422 chromosomal replicati 99.4 1.4E-13 3.1E-18 146.6 5.2 140 250-402 142-289 (445)
130 PRK14086 dnaA chromosomal repl 99.4 4.6E-13 1E-17 145.7 8.1 153 250-416 315-479 (617)
131 PRK11034 clpA ATP-dependent Cl 99.4 5.8E-13 1.3E-17 149.7 8.8 166 217-398 459-667 (758)
132 COG3604 FhlA Transcriptional r 99.4 2E-13 4.3E-18 142.6 2.9 208 212-447 219-454 (550)
133 TIGR02640 gas_vesic_GvpN gas v 99.4 2.1E-12 4.5E-17 128.8 10.1 133 250-397 22-198 (262)
134 PF00308 Bac_DnaA: Bacterial d 99.4 6.5E-13 1.4E-17 129.0 6.2 169 211-403 3-185 (219)
135 cd00009 AAA The AAA+ (ATPases 99.4 2.6E-12 5.6E-17 113.3 9.2 138 220-382 2-150 (151)
136 PRK14971 DNA polymerase III su 99.3 3.5E-12 7.6E-17 140.9 11.7 163 207-403 8-199 (614)
137 TIGR02639 ClpA ATP-dependent C 99.3 1.6E-12 3.5E-17 146.9 8.5 166 216-399 454-664 (731)
138 TIGR02974 phageshock_pspF psp 99.3 1.8E-12 3.9E-17 133.3 8.0 196 218-447 1-231 (329)
139 KOG0991 Replication factor C, 99.3 1.5E-12 3.1E-17 124.4 5.9 159 206-396 17-184 (333)
140 PRK13407 bchI magnesium chelat 99.3 1.4E-12 2.9E-17 134.0 6.1 162 211-397 3-216 (334)
141 TIGR01817 nifA Nif-specific re 99.3 2.1E-12 4.6E-17 141.2 6.4 216 210-466 190-439 (534)
142 PRK15424 propionate catabolism 99.3 2E-12 4.3E-17 140.3 5.4 205 213-447 216-463 (538)
143 COG1474 CDC6 Cdc6-related prot 99.3 1.3E-11 2.8E-16 128.5 11.0 226 215-477 16-270 (366)
144 COG2607 Predicted ATPase (AAA+ 99.3 1.2E-11 2.7E-16 118.7 9.9 166 209-403 53-245 (287)
145 PRK05642 DNA replication initi 99.3 9.1E-12 2E-16 122.2 9.3 129 250-400 46-182 (234)
146 PRK05022 anaerobic nitric oxid 99.3 7.9E-12 1.7E-16 135.9 9.5 200 214-447 185-418 (509)
147 PRK11608 pspF phage shock prot 99.3 6.2E-12 1.3E-16 129.3 8.2 199 215-447 5-238 (326)
148 PRK14087 dnaA chromosomal repl 99.3 1.3E-12 2.9E-17 139.5 2.9 138 250-401 142-292 (450)
149 CHL00081 chlI Mg-protoporyphyr 99.3 8.5E-12 1.8E-16 128.5 7.9 162 211-397 12-232 (350)
150 TIGR02329 propionate_PrpR prop 99.3 5E-12 1.1E-16 137.2 6.5 215 213-467 209-465 (526)
151 PRK10820 DNA-binding transcrip 99.2 9.7E-12 2.1E-16 135.4 7.6 204 210-447 198-435 (520)
152 TIGR02442 Cob-chelat-sub cobal 99.2 8.2E-12 1.8E-16 138.9 6.9 156 214-397 2-214 (633)
153 COG0542 clpA ATP-binding subun 99.2 1.3E-11 2.8E-16 136.9 8.2 168 216-399 491-707 (786)
154 COG0593 DnaA ATPase involved i 99.2 2.2E-11 4.8E-16 127.0 9.3 141 249-403 113-263 (408)
155 PF01078 Mg_chelatase: Magnesi 99.2 2.1E-12 4.5E-17 123.1 1.0 45 215-273 2-46 (206)
156 PRK06620 hypothetical protein; 99.2 3.5E-11 7.6E-16 116.5 9.2 147 210-401 10-164 (214)
157 PRK15429 formate hydrogenlyase 99.2 1.9E-11 4.1E-16 137.5 8.3 200 212-446 372-606 (686)
158 PRK05564 DNA polymerase III su 99.2 2.6E-11 5.6E-16 123.9 8.5 152 214-397 2-165 (313)
159 PRK11388 DNA-binding transcrip 99.2 1.6E-11 3.4E-16 137.2 7.4 218 211-469 320-568 (638)
160 TIGR01650 PD_CobS cobaltochela 99.2 1.6E-11 3.5E-16 124.8 6.3 142 250-398 65-234 (327)
161 PRK09112 DNA polymerase III su 99.2 3E-11 6.5E-16 125.2 8.4 159 210-396 17-212 (351)
162 PHA02244 ATPase-like protein 99.2 3.1E-11 6.7E-16 124.2 8.1 133 249-389 119-266 (383)
163 COG1221 PspF Transcriptional r 99.2 1.2E-11 2.5E-16 128.8 4.0 208 213-446 75-306 (403)
164 TIGR02030 BchI-ChlI magnesium 99.2 4.4E-11 9.6E-16 123.1 8.0 156 214-397 2-219 (337)
165 COG0470 HolB ATPase involved i 99.2 4E-11 8.6E-16 122.0 7.2 149 217-394 2-178 (325)
166 COG0714 MoxR-like ATPases [Gen 99.2 4.3E-11 9.4E-16 123.1 7.4 154 217-397 25-203 (329)
167 COG1219 ClpX ATP-dependent pro 99.2 4.3E-11 9.3E-16 119.1 6.6 131 218-348 63-203 (408)
168 TIGR03345 VI_ClpV1 type VI sec 99.2 5.6E-11 1.2E-15 135.9 8.5 165 216-399 566-782 (852)
169 KOG1969 DNA replication checkp 99.1 4E-11 8.6E-16 129.9 6.5 206 205-431 260-512 (877)
170 PRK07471 DNA polymerase III su 99.1 8.5E-11 1.8E-15 122.4 8.6 160 210-397 13-213 (365)
171 PRK11331 5-methylcytosine-spec 99.1 1.5E-10 3.2E-15 122.1 10.4 142 215-383 174-357 (459)
172 PRK09087 hypothetical protein; 99.1 7.1E-11 1.5E-15 115.3 7.5 122 250-402 45-171 (226)
173 PF07728 AAA_5: AAA domain (dy 99.1 2.2E-11 4.7E-16 109.2 3.3 111 251-375 1-139 (139)
174 CHL00095 clpC Clp protease ATP 99.1 7.4E-11 1.6E-15 135.0 8.2 166 216-399 509-734 (821)
175 TIGR02915 PEP_resp_reg putativ 99.1 4.9E-11 1.1E-15 127.3 6.2 200 214-447 137-370 (445)
176 PRK13531 regulatory ATPase Rav 99.1 1.3E-10 2.9E-15 123.4 8.1 154 216-396 20-193 (498)
177 TIGR00678 holB DNA polymerase 99.1 3.2E-10 6.9E-15 107.1 9.5 126 249-396 14-167 (188)
178 TIGR03346 chaperone_ClpB ATP-d 99.1 1.6E-10 3.4E-15 132.8 8.5 167 216-398 565-777 (852)
179 PF00158 Sigma54_activat: Sigm 99.1 1.2E-10 2.6E-15 108.5 6.1 121 218-364 1-144 (168)
180 smart00382 AAA ATPases associa 99.1 1.1E-10 2.4E-15 101.7 5.1 127 250-384 3-147 (148)
181 PRK08058 DNA polymerase III su 99.1 3.5E-10 7.7E-15 116.4 9.6 149 214-395 3-180 (329)
182 COG1224 TIP49 DNA helicase TIP 99.1 2.8E-10 6.2E-15 114.8 8.2 132 309-476 292-436 (450)
183 PRK10923 glnG nitrogen regulat 99.1 2.1E-10 4.6E-15 123.3 7.7 216 214-469 136-385 (469)
184 PRK10865 protein disaggregatio 99.1 2.8E-10 6.1E-15 130.5 8.6 163 216-399 568-781 (857)
185 PRK07399 DNA polymerase III su 99.0 3.4E-10 7.3E-15 115.7 7.8 155 214-397 2-195 (314)
186 PRK15115 response regulator Gl 99.0 5.9E-10 1.3E-14 119.0 9.9 213 217-469 135-381 (444)
187 KOG0741 AAA+-type ATPase [Post 99.0 5.9E-10 1.3E-14 117.1 9.4 144 249-395 538-684 (744)
188 PRK05707 DNA polymerase III su 99.0 6.4E-10 1.4E-14 114.3 8.5 130 248-397 21-178 (328)
189 PF07724 AAA_2: AAA domain (Cd 99.0 1.4E-10 3E-15 108.4 3.2 113 249-365 3-131 (171)
190 KOG0990 Replication factor C, 99.0 5.8E-10 1.3E-14 111.3 7.5 167 204-402 29-208 (360)
191 COG1220 HslU ATP-dependent pro 99.0 1.9E-09 4.1E-14 108.2 10.1 85 309-395 251-347 (444)
192 PRK04132 replication factor C 99.0 8.4E-10 1.8E-14 124.7 8.2 129 250-401 565-706 (846)
193 TIGR02031 BchD-ChlD magnesium 99.0 1.3E-09 2.9E-14 120.3 9.3 132 250-397 17-174 (589)
194 TIGR00368 Mg chelatase-related 99.0 6.4E-10 1.4E-14 120.1 5.7 145 213-387 189-394 (499)
195 PF05621 TniB: Bacterial TniB 98.9 3.8E-09 8.3E-14 106.0 10.6 201 215-436 36-271 (302)
196 COG1239 ChlI Mg-chelatase subu 98.9 2.6E-09 5.6E-14 110.6 8.8 161 213-399 14-234 (423)
197 TIGR00602 rad24 checkpoint pro 98.9 3.1E-09 6.7E-14 117.3 9.7 176 204-400 72-290 (637)
198 KOG2035 Replication factor C, 98.9 8.4E-09 1.8E-13 101.2 11.5 169 206-403 3-205 (351)
199 PRK11361 acetoacetate metaboli 98.9 1.7E-09 3.7E-14 115.7 7.2 199 215-447 142-374 (457)
200 PF07726 AAA_3: ATPase family 98.9 1.6E-10 3.5E-15 101.9 -0.6 109 251-375 1-129 (131)
201 smart00350 MCM minichromosome 98.9 8.3E-10 1.8E-14 120.1 4.3 166 217-398 204-401 (509)
202 KOG0745 Putative ATP-dependent 98.9 3.2E-09 6.8E-14 109.5 7.9 134 250-384 227-386 (564)
203 TIGR00764 lon_rel lon-related 98.9 1.4E-09 3E-14 120.4 5.7 53 210-276 12-64 (608)
204 TIGR01818 ntrC nitrogen regula 98.9 9.3E-10 2E-14 118.0 4.2 215 215-469 133-381 (463)
205 PF13177 DNA_pol3_delta2: DNA 98.9 3.2E-09 7E-14 98.3 6.2 133 220-383 1-160 (162)
206 COG0606 Predicted ATPase with 98.9 1E-09 2.3E-14 115.0 3.2 47 213-273 176-222 (490)
207 TIGR03015 pepcterm_ATPase puta 98.9 9.1E-09 2E-13 102.2 9.7 191 250-473 44-267 (269)
208 PRK06871 DNA polymerase III su 98.9 9.8E-09 2.1E-13 105.2 10.0 127 249-396 24-178 (325)
209 smart00763 AAA_PrkA PrkA AAA d 98.8 1.4E-08 3E-13 104.7 10.0 62 215-282 49-118 (361)
210 COG3283 TyrR Transcriptional r 98.8 2.4E-09 5.1E-14 108.2 3.5 207 209-449 197-432 (511)
211 PRK07993 DNA polymerase III su 98.8 1.3E-08 2.9E-13 104.9 9.2 128 248-395 23-178 (334)
212 PRK06964 DNA polymerase III su 98.8 7.7E-09 1.7E-13 106.7 7.3 132 248-396 20-203 (342)
213 PRK10365 transcriptional regul 98.8 2.2E-09 4.7E-14 114.3 3.4 213 217-469 140-386 (441)
214 PRK08769 DNA polymerase III su 98.8 2E-08 4.2E-13 102.8 9.1 144 221-395 9-183 (319)
215 PRK08181 transposase; Validate 98.8 5E-09 1.1E-13 104.8 4.6 126 249-390 106-248 (269)
216 PRK12377 putative replication 98.8 4.7E-09 1E-13 103.8 4.2 111 250-375 102-222 (248)
217 PRK06090 DNA polymerase III su 98.8 3.1E-08 6.6E-13 101.3 9.8 144 221-395 8-178 (319)
218 PRK08116 hypothetical protein; 98.7 5.9E-09 1.3E-13 104.3 4.2 123 249-386 114-251 (268)
219 PRK09862 putative ATP-dependen 98.7 9.2E-09 2E-13 110.9 5.6 144 214-387 189-391 (506)
220 PTZ00111 DNA replication licen 98.7 1E-08 2.2E-13 115.8 5.8 165 217-398 451-658 (915)
221 KOG2227 Pre-initiation complex 98.7 9.2E-08 2E-12 99.9 12.2 235 216-477 150-420 (529)
222 PF14532 Sigma54_activ_2: Sigm 98.7 7.3E-09 1.6E-13 93.1 3.6 126 220-385 2-137 (138)
223 KOG1514 Origin recognition com 98.7 3.2E-08 6.9E-13 107.5 8.8 230 216-478 396-661 (767)
224 KOG1051 Chaperone HSP104 and r 98.7 3.6E-08 7.9E-13 111.2 8.9 178 206-406 176-372 (898)
225 PRK07952 DNA replication prote 98.6 2.6E-08 5.5E-13 98.3 5.0 69 250-320 100-174 (244)
226 PRK08699 DNA polymerase III su 98.6 6.4E-08 1.4E-12 99.5 8.0 130 248-395 20-183 (325)
227 PRK06835 DNA replication prote 98.6 2.6E-08 5.7E-13 102.4 4.3 112 250-376 184-306 (329)
228 PRK06526 transposase; Provisio 98.6 2.6E-08 5.7E-13 98.9 3.3 71 248-320 97-171 (254)
229 PRK13765 ATP-dependent proteas 98.6 5.1E-08 1.1E-12 108.0 5.0 52 209-274 24-75 (637)
230 PF01695 IstB_IS21: IstB-like 98.5 2.2E-08 4.8E-13 94.2 1.1 69 248-318 46-118 (178)
231 KOG1051 Chaperone HSP104 and r 98.5 1.9E-07 4.1E-12 105.5 8.5 129 217-364 563-711 (898)
232 PF13173 AAA_14: AAA domain 98.5 6.7E-08 1.4E-12 85.7 3.9 69 250-320 3-73 (128)
233 PRK06921 hypothetical protein; 98.5 9.8E-08 2.1E-12 95.5 4.2 68 249-319 117-188 (266)
234 PF13401 AAA_22: AAA domain; P 98.4 6.7E-07 1.5E-11 78.6 7.9 72 250-321 5-100 (131)
235 COG1484 DnaC DNA replication p 98.4 1.3E-07 2.8E-12 94.0 3.6 68 248-320 104-179 (254)
236 COG3284 AcoR Transcriptional a 98.4 1.9E-07 4E-12 101.1 4.8 181 250-451 337-542 (606)
237 PF01637 Arch_ATPase: Archaeal 98.4 4.1E-08 9E-13 94.2 -0.2 178 219-418 2-227 (234)
238 PF03215 Rad17: Rad17 cell cyc 98.4 2.5E-07 5.3E-12 100.5 5.4 70 204-280 7-76 (519)
239 PF12775 AAA_7: P-loop contain 98.4 1.6E-07 3.4E-12 94.3 3.5 143 249-399 33-195 (272)
240 PRK09183 transposase/IS protei 98.4 1.2E-07 2.6E-12 94.5 2.5 72 248-320 101-176 (259)
241 KOG0478 DNA replication licens 98.3 5.7E-07 1.2E-11 97.5 6.2 176 217-397 430-626 (804)
242 PRK13406 bchD magnesium chelat 98.3 4.4E-07 9.6E-12 99.8 5.2 124 250-389 26-174 (584)
243 KOG0482 DNA replication licens 98.3 5.7E-07 1.2E-11 94.5 5.1 208 217-433 343-588 (721)
244 KOG0480 DNA replication licens 98.3 4.2E-07 9.1E-12 97.8 4.0 197 215-431 344-571 (764)
245 PF05729 NACHT: NACHT domain 98.3 3E-06 6.4E-11 77.0 8.4 140 251-399 2-165 (166)
246 PF00493 MCM: MCM2/3/5 family 98.3 7.4E-08 1.6E-12 99.3 -3.0 168 217-401 25-225 (331)
247 KOG2228 Origin recognition com 98.2 2.2E-06 4.8E-11 86.6 6.4 162 216-397 24-219 (408)
248 PRK05917 DNA polymerase III su 98.2 2.3E-06 5.1E-11 86.2 6.5 119 249-384 19-154 (290)
249 KOG2680 DNA helicase TIP49, TB 98.2 4.2E-06 9E-11 83.3 7.9 95 364-477 339-434 (454)
250 PF06068 TIP49: TIP49 C-termin 98.2 2.1E-06 4.5E-11 88.3 6.0 81 215-303 23-105 (398)
251 COG1241 MCM2 Predicted ATPase 98.1 7.9E-07 1.7E-11 98.4 1.8 169 216-401 286-487 (682)
252 PRK08939 primosomal protein Dn 98.1 1.8E-06 3.9E-11 88.1 4.1 69 249-319 156-228 (306)
253 KOG1970 Checkpoint RAD17-RFC c 98.1 1E-05 2.2E-10 86.3 9.7 72 204-281 70-142 (634)
254 PRK05818 DNA polymerase III su 98.1 7.3E-06 1.6E-10 81.2 7.8 121 247-384 5-147 (261)
255 cd01120 RecA-like_NTPases RecA 98.0 1.3E-05 2.8E-10 72.2 7.4 72 252-323 2-100 (165)
256 PRK07276 DNA polymerase III su 98.0 1.8E-05 3.8E-10 80.0 8.5 143 221-394 7-172 (290)
257 PF12774 AAA_6: Hydrolytic ATP 98.0 7.5E-06 1.6E-10 80.3 5.0 132 250-392 33-175 (231)
258 PF00910 RNA_helicase: RNA hel 98.0 4.5E-06 9.7E-11 71.8 3.0 26 252-277 1-26 (107)
259 TIGR01618 phage_P_loop phage n 98.0 6.7E-06 1.4E-10 79.9 4.2 111 249-361 12-142 (220)
260 PRK07132 DNA polymerase III su 98.0 2.9E-05 6.3E-10 78.9 9.0 124 250-395 19-160 (299)
261 PF00931 NB-ARC: NB-ARC domain 97.9 1.1E-05 2.4E-10 80.7 5.3 166 222-418 2-195 (287)
262 COG5271 MDN1 AAA ATPase contai 97.9 1.8E-05 3.8E-10 92.4 7.0 146 249-399 1543-1705(4600)
263 PF03969 AFG1_ATPase: AFG1-lik 97.9 8.3E-06 1.8E-10 85.1 4.1 101 247-364 60-168 (362)
264 PHA00729 NTP-binding motif con 97.9 1.8E-05 3.9E-10 77.0 5.8 27 250-276 18-44 (226)
265 COG1618 Predicted nucleotide k 97.9 2.7E-05 5.8E-10 71.4 6.4 24 250-273 6-29 (179)
266 PLN03210 Resistant to P. syrin 97.9 4.2E-05 9.1E-10 91.3 9.4 57 210-276 178-234 (1153)
267 KOG0477 DNA replication licens 97.9 1.4E-05 3E-10 86.1 4.6 157 217-383 450-631 (854)
268 PRK15455 PrkA family serine pr 97.8 2E-05 4.2E-10 85.7 4.8 62 215-282 75-137 (644)
269 COG4650 RtcR Sigma54-dependent 97.8 2.1E-05 4.5E-10 78.2 3.9 74 250-323 209-297 (531)
270 TIGR02237 recomb_radB DNA repa 97.7 6.2E-05 1.3E-09 72.1 6.6 80 244-323 7-112 (209)
271 PF13207 AAA_17: AAA domain; P 97.7 2.3E-05 5E-10 68.0 3.3 31 252-282 2-32 (121)
272 PHA02624 large T antigen; Prov 97.6 3.4E-05 7.4E-10 84.1 3.8 39 246-284 428-466 (647)
273 PRK12723 flagellar biosynthesi 97.6 0.00027 5.8E-09 74.4 10.0 113 249-375 174-309 (388)
274 PRK14722 flhF flagellar biosyn 97.6 0.0002 4.4E-09 74.8 8.9 115 247-376 135-270 (374)
275 PF06309 Torsin: Torsin; Inte 97.6 0.00014 3E-09 64.3 6.2 53 216-273 25-77 (127)
276 PRK08118 topology modulation p 97.6 0.00011 2.3E-09 68.5 5.7 32 251-282 3-34 (167)
277 cd01124 KaiC KaiC is a circadi 97.6 0.00011 2.5E-09 68.5 5.9 31 252-282 2-35 (187)
278 KOG2170 ATPase of the AAA+ sup 97.6 0.00013 2.9E-09 72.9 6.5 98 217-322 83-192 (344)
279 KOG1942 DNA helicase, TBP-inte 97.6 8.2E-05 1.8E-09 74.1 4.9 74 215-295 37-112 (456)
280 KOG1968 Replication factor C, 97.6 2.1E-05 4.6E-10 89.7 0.8 206 205-429 309-531 (871)
281 PRK07261 topology modulation p 97.6 0.00013 2.9E-09 68.1 5.9 35 251-285 2-36 (171)
282 PRK11823 DNA repair protein Ra 97.5 0.00019 4.1E-09 77.1 7.8 78 246-323 77-171 (446)
283 PRK14974 cell division protein 97.5 0.00048 1E-08 71.2 10.2 34 249-282 140-176 (336)
284 PRK09361 radB DNA repair and r 97.5 0.00016 3.4E-09 70.2 6.3 39 245-283 19-60 (225)
285 PF13191 AAA_16: AAA ATPase do 97.5 0.0001 2.2E-09 68.3 4.8 59 218-285 2-63 (185)
286 PRK00131 aroK shikimate kinase 97.5 7.9E-05 1.7E-09 68.6 3.8 34 248-281 3-36 (175)
287 cd01121 Sms Sms (bacterial rad 97.5 0.00025 5.5E-09 74.3 8.0 78 246-323 79-173 (372)
288 COG3854 SpoIIIAA ncharacterize 97.4 0.00023 5.1E-09 68.8 5.5 72 249-320 137-230 (308)
289 COG1485 Predicted ATPase [Gene 97.4 0.00051 1.1E-08 70.3 8.2 102 246-364 62-171 (367)
290 KOG0479 DNA replication licens 97.4 0.00013 2.9E-09 78.3 4.1 241 131-381 210-481 (818)
291 PF09336 Vps4_C: Vps4 C termin 97.4 5E-05 1.1E-09 58.9 0.5 33 459-491 29-62 (62)
292 PRK13947 shikimate kinase; Pro 97.3 0.00015 3.3E-09 66.9 3.5 31 251-281 3-33 (171)
293 PRK06067 flagellar accessory p 97.3 0.00055 1.2E-08 66.9 7.4 77 245-321 21-133 (234)
294 PRK03839 putative kinase; Prov 97.3 0.00017 3.6E-09 67.5 3.3 31 251-281 2-32 (180)
295 cd01394 radB RadB. The archaea 97.3 0.00051 1.1E-08 66.2 6.5 39 245-283 15-56 (218)
296 PF13671 AAA_33: AAA domain; P 97.3 0.00017 3.7E-09 64.3 2.8 27 252-278 2-28 (143)
297 PF13604 AAA_30: AAA domain; P 97.3 0.0003 6.5E-09 67.2 4.4 34 250-283 19-55 (196)
298 PRK09376 rho transcription ter 97.2 0.00061 1.3E-08 71.3 7.0 74 251-324 171-272 (416)
299 PF05707 Zot: Zonular occluden 97.2 0.00017 3.7E-09 68.6 2.7 122 252-383 3-145 (193)
300 PRK00625 shikimate kinase; Pro 97.2 0.00022 4.8E-09 66.8 3.4 31 251-281 2-32 (173)
301 PF00437 T2SE: Type II/IV secr 97.2 0.00025 5.3E-09 70.8 3.9 95 213-317 101-206 (270)
302 cd01131 PilT Pilus retraction 97.2 0.00039 8.3E-09 66.5 4.9 67 251-317 3-83 (198)
303 PRK06762 hypothetical protein; 97.2 0.00053 1.1E-08 63.1 5.7 37 250-286 3-39 (166)
304 cd00464 SK Shikimate kinase (S 97.2 0.00027 5.8E-09 63.8 3.3 31 251-281 1-31 (154)
305 KOG3347 Predicted nucleotide k 97.2 0.00025 5.5E-09 64.2 2.8 32 250-281 8-39 (176)
306 TIGR02012 tigrfam_recA protein 97.2 0.001 2.3E-08 68.2 7.6 79 245-323 51-148 (321)
307 COG3267 ExeA Type II secretory 97.2 0.00086 1.9E-08 65.9 6.6 173 251-435 53-254 (269)
308 cd01129 PulE-GspE PulE/GspE Th 97.2 0.00067 1.4E-08 67.9 6.0 92 214-318 58-159 (264)
309 cd03283 ABC_MutS-like MutS-lik 97.2 0.00096 2.1E-08 63.9 6.8 68 250-317 26-114 (199)
310 PRK13949 shikimate kinase; Pro 97.2 0.00031 6.6E-09 65.5 3.3 32 250-281 2-33 (169)
311 KOG0481 DNA replication licens 97.1 0.00066 1.4E-08 72.1 6.0 173 217-397 332-528 (729)
312 PRK08533 flagellar accessory p 97.1 0.00055 1.2E-08 67.1 5.2 76 246-321 21-130 (230)
313 PRK00771 signal recognition pa 97.1 0.0034 7.4E-08 67.2 11.5 36 248-283 94-132 (437)
314 PRK14532 adenylate kinase; Pro 97.1 0.00035 7.6E-09 65.8 3.6 34 251-286 2-35 (188)
315 PF00448 SRP54: SRP54-type pro 97.1 0.0013 2.8E-08 63.0 7.5 25 249-273 1-25 (196)
316 cd01393 recA_like RecA is a b 97.1 0.00088 1.9E-08 64.8 6.4 40 245-284 15-63 (226)
317 TIGR02688 conserved hypothetic 97.1 0.00041 9E-09 73.1 4.3 62 248-321 208-273 (449)
318 COG0703 AroK Shikimate kinase 97.1 0.00029 6.3E-09 65.7 2.8 32 250-281 3-34 (172)
319 PHA02774 E1; Provisional 97.1 0.00056 1.2E-08 74.6 5.4 35 248-282 433-468 (613)
320 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00036 7.8E-09 65.2 3.5 33 252-286 2-34 (183)
321 COG5271 MDN1 AAA ATPase contai 97.1 0.0011 2.4E-08 78.2 7.9 132 251-398 890-1048(4600)
322 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.001 2.2E-08 64.8 6.7 40 245-284 15-63 (235)
323 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0023 4.9E-08 62.9 9.2 39 244-282 16-57 (237)
324 cd01128 rho_factor Transcripti 97.1 0.0013 2.7E-08 65.4 7.4 27 249-275 16-42 (249)
325 PRK04296 thymidine kinase; Pro 97.1 0.0013 2.9E-08 62.4 7.1 31 251-281 4-37 (190)
326 PF14516 AAA_35: AAA-like doma 97.1 0.00087 1.9E-08 69.3 6.0 161 249-419 31-233 (331)
327 cd00983 recA RecA is a bacter 97.1 0.0015 3.3E-08 67.1 7.7 78 245-322 51-147 (325)
328 PRK05800 cobU adenosylcobinami 97.1 0.0017 3.8E-08 60.6 7.4 70 251-324 3-92 (170)
329 PRK06217 hypothetical protein; 97.1 0.00044 9.5E-09 65.1 3.4 31 251-281 3-33 (183)
330 cd02021 GntK Gluconate kinase 97.1 0.00046 1E-08 62.4 3.5 28 252-279 2-29 (150)
331 cd00544 CobU Adenosylcobinamid 97.0 0.0017 3.6E-08 60.7 7.2 72 252-325 2-90 (169)
332 TIGR02782 TrbB_P P-type conjug 97.0 0.00053 1.2E-08 69.9 4.2 68 250-317 133-213 (299)
333 PRK13948 shikimate kinase; Pro 97.0 0.00053 1.1E-08 64.8 3.9 35 247-281 8-42 (182)
334 PRK05703 flhF flagellar biosyn 97.0 0.0028 6E-08 67.7 9.7 36 249-284 221-261 (424)
335 TIGR03499 FlhF flagellar biosy 97.0 0.0024 5.2E-08 64.5 8.7 37 248-284 193-234 (282)
336 TIGR02858 spore_III_AA stage I 97.0 0.0005 1.1E-08 69.0 3.8 68 250-317 112-203 (270)
337 PRK11889 flhF flagellar biosyn 97.0 0.0046 9.9E-08 65.0 10.9 58 222-282 217-277 (436)
338 cd01428 ADK Adenylate kinase ( 97.0 0.00052 1.1E-08 64.5 3.5 29 252-280 2-30 (194)
339 cd01130 VirB11-like_ATPase Typ 97.0 0.00068 1.5E-08 64.0 4.3 69 249-317 25-109 (186)
340 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.002 4.4E-08 62.3 7.6 22 250-271 30-51 (213)
341 cd00227 CPT Chloramphenicol (C 97.0 0.00048 1E-08 64.3 3.1 34 250-283 3-36 (175)
342 PRK06581 DNA polymerase III su 97.0 0.0024 5.1E-08 62.7 7.9 135 250-401 16-165 (263)
343 TIGR01313 therm_gnt_kin carboh 97.0 0.00055 1.2E-08 62.8 3.4 28 252-279 1-28 (163)
344 cd02020 CMPK Cytidine monophos 97.0 0.00054 1.2E-08 61.2 3.2 30 252-281 2-31 (147)
345 PRK14530 adenylate kinase; Pro 97.0 0.00062 1.3E-08 65.7 3.8 31 250-280 4-34 (215)
346 PRK14531 adenylate kinase; Pro 97.0 0.00064 1.4E-08 64.0 3.7 30 250-279 3-32 (183)
347 KOG2543 Origin recognition com 97.0 0.0027 5.9E-08 65.6 8.3 60 217-285 7-66 (438)
348 PF06745 KaiC: KaiC; InterPro 97.0 0.0024 5.2E-08 61.9 7.7 77 244-320 14-127 (226)
349 TIGR00064 ftsY signal recognit 97.0 0.0043 9.3E-08 62.4 9.8 36 248-283 71-109 (272)
350 cd03243 ABC_MutS_homologs The 97.0 0.0021 4.5E-08 61.4 7.2 22 250-271 30-51 (202)
351 cd00046 DEXDc DEAD-like helica 97.0 0.00097 2.1E-08 57.5 4.4 24 250-273 1-24 (144)
352 COG0563 Adk Adenylate kinase a 96.9 0.00094 2E-08 62.9 4.3 34 251-286 2-35 (178)
353 COG1373 Predicted ATPase (AAA+ 96.9 0.0013 2.8E-08 69.7 5.8 120 251-391 39-161 (398)
354 PRK13695 putative NTPase; Prov 96.9 0.0018 3.9E-08 60.3 6.0 23 251-273 2-24 (174)
355 PRK13946 shikimate kinase; Pro 96.9 0.00072 1.6E-08 63.7 3.4 32 250-281 11-42 (184)
356 PRK05057 aroK shikimate kinase 96.9 0.00084 1.8E-08 62.7 3.6 33 250-282 5-37 (172)
357 TIGR01420 pilT_fam pilus retra 96.9 0.0012 2.6E-08 68.6 5.1 68 250-317 123-204 (343)
358 PRK03731 aroL shikimate kinase 96.9 0.00084 1.8E-08 62.1 3.6 32 250-281 3-34 (171)
359 PRK12726 flagellar biosynthesi 96.9 0.0064 1.4E-07 63.6 10.3 60 221-282 180-242 (407)
360 TIGR00416 sms DNA repair prote 96.9 0.002 4.4E-08 69.3 6.9 77 246-322 91-184 (454)
361 cd01122 GP4d_helicase GP4d_hel 96.9 0.0059 1.3E-07 60.8 9.7 37 246-282 27-67 (271)
362 PTZ00088 adenylate kinase 1; P 96.8 0.001 2.2E-08 65.3 3.9 31 250-280 7-37 (229)
363 PRK13764 ATPase; Provisional 96.8 0.002 4.3E-08 71.3 6.4 68 249-317 257-333 (602)
364 COG1102 Cmk Cytidylate kinase 96.8 0.00088 1.9E-08 61.6 3.0 28 252-279 3-30 (179)
365 PRK13900 type IV secretion sys 96.8 0.002 4.3E-08 66.7 5.9 69 249-317 160-244 (332)
366 PRK13833 conjugal transfer pro 96.8 0.0011 2.5E-08 68.0 4.1 68 250-317 145-224 (323)
367 COG4088 Predicted nucleotide k 96.8 0.0036 7.8E-08 59.9 7.0 24 251-274 3-26 (261)
368 PRK06547 hypothetical protein; 96.8 0.0011 2.3E-08 62.1 3.6 33 249-281 15-47 (172)
369 PRK04841 transcriptional regul 96.8 0.0049 1.1E-07 71.6 9.7 52 215-282 13-64 (903)
370 PRK12724 flagellar biosynthesi 96.8 0.0075 1.6E-07 64.0 10.0 35 249-283 223-261 (432)
371 PRK14528 adenylate kinase; Pro 96.8 0.0011 2.4E-08 62.7 3.5 31 250-280 2-32 (186)
372 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0011 2.4E-08 61.9 3.3 29 250-278 4-32 (188)
373 PF13238 AAA_18: AAA domain; P 96.8 0.00087 1.9E-08 58.1 2.5 22 252-273 1-22 (129)
374 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0025 5.5E-08 59.9 5.8 72 247-318 23-99 (177)
375 smart00534 MUTSac ATPase domai 96.7 0.0049 1.1E-07 58.2 7.6 20 252-271 2-21 (185)
376 PF13245 AAA_19: Part of AAA d 96.7 0.0018 3.9E-08 52.3 4.0 23 251-273 12-35 (76)
377 TIGR02525 plasmid_TraJ plasmid 96.7 0.0014 3E-08 68.8 4.2 68 250-317 150-234 (372)
378 COG1936 Predicted nucleotide k 96.7 0.001 2.2E-08 61.8 2.7 30 251-281 2-31 (180)
379 PF08298 AAA_PrkA: PrkA AAA do 96.7 0.0029 6.2E-08 65.3 6.2 59 216-280 61-120 (358)
380 PRK02496 adk adenylate kinase; 96.7 0.0012 2.5E-08 62.1 3.1 30 251-280 3-32 (184)
381 PRK04328 hypothetical protein; 96.7 0.0071 1.5E-07 59.9 8.9 37 245-281 19-58 (249)
382 TIGR03574 selen_PSTK L-seryl-t 96.7 0.0023 4.9E-08 63.2 5.3 34 252-285 2-38 (249)
383 PRK13894 conjugal transfer ATP 96.7 0.0016 3.5E-08 66.9 4.3 69 249-317 148-228 (319)
384 TIGR01351 adk adenylate kinase 96.7 0.0012 2.7E-08 63.4 3.2 33 252-286 2-34 (210)
385 PRK10416 signal recognition pa 96.7 0.01 2.3E-07 61.0 10.1 35 248-282 113-150 (318)
386 PF04665 Pox_A32: Poxvirus A32 96.7 0.0032 7E-08 62.0 6.0 133 247-397 11-170 (241)
387 PLN02674 adenylate kinase 96.7 0.0017 3.7E-08 64.2 4.1 36 250-287 32-67 (244)
388 PRK08154 anaerobic benzoate ca 96.7 0.0017 3.7E-08 66.4 4.3 36 246-281 130-165 (309)
389 cd03115 SRP The signal recogni 96.6 0.0042 9.2E-08 57.5 6.5 32 252-283 3-37 (173)
390 PLN02200 adenylate kinase fami 96.6 0.0017 3.7E-08 63.8 4.0 37 249-287 43-79 (234)
391 TIGR00767 rho transcription te 96.6 0.0044 9.6E-08 65.2 7.2 27 248-274 167-193 (415)
392 PRK00279 adk adenylate kinase; 96.6 0.0015 3.2E-08 63.1 3.4 34 251-286 2-35 (215)
393 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.0059 1.3E-07 58.3 7.5 21 250-270 29-49 (200)
394 COG2804 PulE Type II secretory 96.6 0.0028 6E-08 67.9 5.7 89 213-319 235-338 (500)
395 TIGR02533 type_II_gspE general 96.6 0.0027 5.9E-08 69.0 5.8 94 211-318 217-321 (486)
396 COG5245 DYN1 Dynein, heavy cha 96.6 0.0018 3.9E-08 76.0 4.4 145 247-398 1492-1659(3164)
397 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.0054 1.2E-07 61.2 7.4 38 245-282 32-72 (259)
398 TIGR02788 VirB11 P-type DNA tr 96.6 0.0025 5.4E-08 65.2 5.0 71 248-318 143-228 (308)
399 PRK14527 adenylate kinase; Pro 96.6 0.0015 3.2E-08 61.9 3.1 31 249-279 6-36 (191)
400 cd02019 NK Nucleoside/nucleoti 96.6 0.0023 4.9E-08 50.5 3.7 22 252-273 2-23 (69)
401 PRK09354 recA recombinase A; P 96.6 0.006 1.3E-07 63.3 7.8 78 245-322 56-152 (349)
402 PRK04040 adenylate kinase; Pro 96.6 0.0018 4E-08 61.4 3.7 29 250-278 3-33 (188)
403 cd03216 ABC_Carb_Monos_I This 96.6 0.0029 6.3E-08 58.4 4.9 73 246-318 23-110 (163)
404 COG1855 ATPase (PilT family) [ 96.5 0.002 4.3E-08 67.8 3.7 44 213-273 244-287 (604)
405 KOG2383 Predicted ATPase [Gene 96.5 0.016 3.6E-07 60.3 10.3 28 246-273 111-138 (467)
406 PF13521 AAA_28: AAA domain; P 96.5 0.0019 4.1E-08 59.3 3.3 26 252-278 2-27 (163)
407 PF00406 ADK: Adenylate kinase 96.5 0.0017 3.6E-08 59.0 2.8 32 254-287 1-32 (151)
408 PF13086 AAA_11: AAA domain; P 96.5 0.0026 5.7E-08 60.7 4.2 22 252-273 20-41 (236)
409 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.0057 1.2E-07 55.3 6.2 72 246-319 23-99 (144)
410 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0058 1.3E-07 58.3 6.5 41 248-288 14-55 (199)
411 TIGR01448 recD_rel helicase, p 96.5 0.005 1.1E-07 70.1 6.9 71 250-320 339-428 (720)
412 COG2805 PilT Tfp pilus assembl 96.5 0.0021 4.5E-08 64.7 3.4 72 248-319 123-209 (353)
413 PRK04182 cytidylate kinase; Pr 96.5 0.0022 4.8E-08 59.3 3.2 29 251-279 2-30 (180)
414 PRK01184 hypothetical protein; 96.4 0.0022 4.7E-08 60.1 3.1 29 251-280 3-31 (184)
415 PF09848 DUF2075: Uncharacteri 96.4 0.0027 5.9E-08 66.1 4.1 23 251-273 3-25 (352)
416 COG1116 TauB ABC-type nitrate/ 96.4 0.0025 5.5E-08 62.5 3.5 26 248-273 28-53 (248)
417 TIGR02655 circ_KaiC circadian 96.4 0.0062 1.3E-07 66.2 6.9 78 245-322 259-367 (484)
418 PF13479 AAA_24: AAA domain 96.4 0.0067 1.4E-07 58.6 6.3 68 250-320 4-80 (213)
419 TIGR03880 KaiC_arch_3 KaiC dom 96.4 0.012 2.6E-07 57.0 8.1 38 245-282 12-52 (224)
420 PRK10436 hypothetical protein; 96.4 0.0036 7.7E-08 67.5 4.8 93 212-317 194-296 (462)
421 PRK08233 hypothetical protein; 96.4 0.0029 6.2E-08 58.8 3.6 31 251-281 5-36 (182)
422 cd03238 ABC_UvrA The excision 96.4 0.0066 1.4E-07 57.1 6.0 26 246-271 18-43 (176)
423 COG1066 Sms Predicted ATP-depe 96.4 0.0063 1.4E-07 63.6 6.2 98 246-343 90-204 (456)
424 PRK06696 uridine kinase; Valid 96.4 0.0031 6.7E-08 61.3 3.8 37 250-286 23-62 (223)
425 PF01583 APS_kinase: Adenylyls 96.4 0.0033 7.1E-08 57.9 3.7 39 250-288 3-44 (156)
426 TIGR00174 miaA tRNA isopenteny 96.4 0.0017 3.6E-08 65.7 1.9 36 252-287 2-37 (287)
427 PF05272 VirE: Virulence-assoc 96.3 0.0064 1.4E-07 58.3 5.8 111 250-383 53-169 (198)
428 TIGR02173 cyt_kin_arch cytidyl 96.3 0.0028 6E-08 58.2 3.2 29 252-280 3-31 (171)
429 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0025 5.3E-08 57.2 2.7 29 248-276 21-49 (133)
430 PRK13851 type IV secretion sys 96.3 0.0031 6.8E-08 65.5 3.9 70 248-317 161-245 (344)
431 smart00487 DEXDc DEAD-like hel 96.3 0.011 2.4E-07 54.1 7.2 24 250-273 25-49 (201)
432 PRK14529 adenylate kinase; Pro 96.3 0.0046 1E-07 60.3 4.7 36 251-288 2-37 (223)
433 PLN02840 tRNA dimethylallyltra 96.3 0.0017 3.7E-08 68.8 1.8 37 250-286 22-58 (421)
434 PHA02530 pseT polynucleotide k 96.3 0.0032 6.9E-08 63.7 3.7 30 250-279 3-33 (300)
435 PLN02165 adenylate isopentenyl 96.3 0.0019 4.1E-08 66.5 2.0 34 250-283 44-77 (334)
436 PRK14737 gmk guanylate kinase; 96.3 0.0045 9.7E-08 58.7 4.4 25 249-273 4-28 (186)
437 cd02027 APSK Adenosine 5'-phos 96.3 0.0033 7.2E-08 57.2 3.4 32 252-283 2-36 (149)
438 cd00984 DnaB_C DnaB helicase C 96.3 0.0096 2.1E-07 58.1 6.8 37 246-282 10-50 (242)
439 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.015 3.3E-07 53.8 7.6 22 252-273 5-26 (159)
440 PRK10078 ribose 1,5-bisphospho 96.3 0.0037 8.1E-08 58.9 3.7 29 250-278 3-31 (186)
441 PRK05541 adenylylsulfate kinas 96.3 0.004 8.6E-08 58.0 3.8 27 248-274 6-32 (176)
442 PRK04301 radA DNA repair and r 96.3 0.0085 1.8E-07 61.5 6.5 40 245-284 98-146 (317)
443 PF13481 AAA_25: AAA domain; P 96.3 0.0076 1.6E-07 56.6 5.7 26 248-273 31-56 (193)
444 PRK00091 miaA tRNA delta(2)-is 96.2 0.0022 4.8E-08 65.5 2.1 36 250-285 5-40 (307)
445 TIGR02238 recomb_DMC1 meiotic 96.2 0.0089 1.9E-07 61.3 6.5 40 245-284 92-140 (313)
446 TIGR02538 type_IV_pilB type IV 96.2 0.0047 1E-07 68.4 4.7 94 212-318 292-395 (564)
447 KOG0058 Peptide exporter, ABC 96.2 0.0089 1.9E-07 66.4 6.8 28 246-273 491-518 (716)
448 PRK14526 adenylate kinase; Pro 96.2 0.0038 8.1E-08 60.4 3.5 34 251-286 2-35 (211)
449 TIGR01526 nadR_NMN_Atrans nico 96.2 0.005 1.1E-07 63.5 4.6 34 250-283 163-196 (325)
450 PF03266 NTPase_1: NTPase; In 96.2 0.0036 7.7E-08 58.4 3.2 23 251-273 1-23 (168)
451 PLN03187 meiotic recombination 96.2 0.01 2.2E-07 61.6 6.7 39 245-283 122-169 (344)
452 TIGR02236 recomb_radA DNA repa 96.2 0.011 2.4E-07 60.3 7.0 40 245-284 91-139 (310)
453 PF08433 KTI12: Chromatin asso 96.2 0.0047 1E-07 62.0 4.2 70 252-322 4-84 (270)
454 PRK12727 flagellar biosynthesi 96.2 0.03 6.5E-07 61.0 10.4 27 247-273 348-374 (559)
455 PF08303 tRNA_lig_kinase: tRNA 96.1 0.031 6.7E-07 51.7 8.9 133 255-401 5-147 (168)
456 PRK10867 signal recognition pa 96.1 0.018 3.8E-07 61.7 8.3 70 248-317 99-192 (433)
457 PRK00889 adenylylsulfate kinas 96.1 0.0058 1.3E-07 56.8 4.2 35 249-283 4-41 (175)
458 TIGR01425 SRP54_euk signal rec 96.1 0.044 9.6E-07 58.5 11.3 35 248-282 99-136 (429)
459 cd03282 ABC_MSH4_euk MutS4 hom 96.1 0.013 2.7E-07 56.5 6.6 22 250-271 30-51 (204)
460 cd00267 ABC_ATPase ABC (ATP-bi 96.1 0.012 2.6E-07 53.7 6.1 27 247-273 23-49 (157)
461 TIGR00959 ffh signal recogniti 96.1 0.043 9.3E-07 58.7 11.1 36 248-283 98-137 (428)
462 cd03227 ABC_Class2 ABC-type Cl 96.1 0.016 3.4E-07 53.4 6.7 24 250-273 22-45 (162)
463 PLN02199 shikimate kinase 96.1 0.0048 1E-07 62.4 3.5 32 250-281 103-134 (303)
464 PLN02748 tRNA dimethylallyltra 96.1 0.0027 5.8E-08 68.3 1.7 37 250-286 23-59 (468)
465 PF12780 AAA_8: P-loop contain 96.0 0.009 1.9E-07 60.0 5.3 86 217-314 9-95 (268)
466 cd01125 repA Hexameric Replica 96.0 0.024 5.2E-07 55.6 8.2 21 252-272 4-24 (239)
467 COG0324 MiaA tRNA delta(2)-iso 96.0 0.003 6.6E-08 64.2 1.7 39 250-288 4-42 (308)
468 TIGR01613 primase_Cterm phage/ 96.0 0.0053 1.1E-07 62.6 3.5 55 221-281 54-108 (304)
469 PRK08099 bifunctional DNA-bind 96.0 0.0074 1.6E-07 64.0 4.7 29 250-278 220-248 (399)
470 PRK12608 transcription termina 96.0 0.011 2.5E-07 61.7 5.9 24 250-273 134-157 (380)
471 PF01745 IPT: Isopentenyl tran 96.0 0.0081 1.8E-07 57.9 4.4 38 251-288 3-40 (233)
472 COG0467 RAD55 RecA-superfamily 96.0 0.0071 1.5E-07 60.1 4.3 41 245-285 19-62 (260)
473 PRK12339 2-phosphoglycerate ki 96.0 0.0065 1.4E-07 58.2 3.8 28 250-277 4-31 (197)
474 TIGR02322 phosphon_PhnN phosph 96.0 0.0048 1E-07 57.5 2.8 24 251-274 3-26 (179)
475 TIGR02655 circ_KaiC circadian 96.0 0.018 3.8E-07 62.7 7.5 39 244-282 16-58 (484)
476 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.022 4.9E-07 55.5 7.4 23 249-271 31-53 (222)
477 PTZ00035 Rad51 protein; Provis 95.9 0.018 3.9E-07 59.7 7.0 39 245-283 114-161 (337)
478 PRK06995 flhF flagellar biosyn 95.9 0.033 7.1E-07 60.3 9.1 25 249-273 256-280 (484)
479 PRK04132 replication factor C 95.9 0.0047 1E-07 70.8 2.8 49 205-265 8-56 (846)
480 cd03228 ABCC_MRP_Like The MRP 95.9 0.01 2.2E-07 55.1 4.5 28 246-273 25-52 (171)
481 PRK14723 flhF flagellar biosyn 95.9 0.035 7.6E-07 63.0 9.4 25 249-273 185-209 (767)
482 TIGR02239 recomb_RAD51 DNA rep 95.9 0.015 3.3E-07 59.7 6.1 40 245-284 92-140 (316)
483 COG0529 CysC Adenylylsulfate k 95.9 0.0087 1.9E-07 55.9 3.9 38 249-286 23-63 (197)
484 PRK14721 flhF flagellar biosyn 95.8 0.046 1E-06 58.2 9.8 26 248-273 190-215 (420)
485 TIGR02768 TraA_Ti Ti-type conj 95.8 0.0075 1.6E-07 68.9 4.1 71 250-320 369-451 (744)
486 PRK05480 uridine/cytidine kina 95.8 0.01 2.2E-07 56.9 4.3 34 250-283 7-41 (209)
487 PRK12338 hypothetical protein; 95.8 0.0083 1.8E-07 61.5 3.8 30 249-278 4-33 (319)
488 PLN02459 probable adenylate ki 95.8 0.0084 1.8E-07 59.8 3.6 34 251-286 31-64 (261)
489 COG2874 FlaH Predicted ATPases 95.7 0.026 5.7E-07 54.4 6.7 118 246-376 25-179 (235)
490 COG0194 Gmk Guanylate kinase [ 95.7 0.014 3.1E-07 55.0 4.8 24 250-273 5-28 (191)
491 COG5192 BMS1 GTP-binding prote 95.7 0.015 3.2E-07 62.7 5.4 69 246-315 66-142 (1077)
492 PRK09302 circadian clock prote 95.7 0.03 6.5E-07 61.2 8.1 113 240-359 22-174 (509)
493 PRK10875 recD exonuclease V su 95.7 0.025 5.4E-07 63.2 7.4 24 250-273 168-191 (615)
494 PRK13975 thymidylate kinase; P 95.7 0.0084 1.8E-07 56.6 3.2 28 250-277 3-30 (196)
495 PLN03186 DNA repair protein RA 95.7 0.022 4.8E-07 59.2 6.5 39 246-284 120-167 (342)
496 cd02028 UMPK_like Uridine mono 95.7 0.0095 2.1E-07 56.0 3.5 35 252-286 2-39 (179)
497 cd02024 NRK1 Nicotinamide ribo 95.7 0.009 2E-07 56.7 3.3 30 252-281 2-32 (187)
498 PRK10263 DNA translocase FtsK; 95.7 0.041 8.8E-07 65.2 9.2 75 310-395 1142-1218(1355)
499 PF01443 Viral_helicase1: Vira 95.6 0.0048 1E-07 59.7 1.4 22 252-273 1-22 (234)
500 PRK10536 hypothetical protein; 95.6 0.032 7E-07 55.5 7.2 73 215-301 54-135 (262)
No 1
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-58 Score=460.56 Aligned_cols=381 Identities=47% Similarity=0.751 Sum_probs=314.9
Q ss_pred CCCCccccccchhhhhhhhcccccccCCCCCCCCCCcCCCC---CCCCCCCCcccCCchhHHHHHhhcCCCceecCCccc
Q 010975 99 EPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDG---SSLNSNGHVQNTSDMAVYEQYRTQGSGSTCLNGVLA 175 (496)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (496)
.|.-.+|.....+.+|+..||+++...+..+ -...++..+ +..+..+......+... ...|....
T Consensus 103 ~p~~~r~~~~~~kt~~~~~~~~~~~~~~~~~-~~~r~~~~s~t~~~s~~~~~~~~~~~~~~----~~~~~~~~------- 170 (491)
T KOG0738|consen 103 KPVERRPAPASRKTRPSSPFGKKKAPTTAAS-PAGRPIGKSSTQNLSTDRADSSTARETNG----ESKGLGNS------- 170 (491)
T ss_pred CccccCCCccccccccccccCCCCCCCCCCC-CCCCCCCCccccCCCCCcccccccccccc----cccccccc-------
Confidence 3445679999999999999999984221111 112223222 11112222111111100 00111111
Q ss_pred cccccccCCCCCCCCCcHHHH-HHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeee
Q 010975 176 NVINERLQKPLLPNFDSAETR-ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILL 254 (496)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL 254 (496)
+.....-.++..+.|++.... .+++.+.+++....|+++|+||.|++++|+.|+|.+..|+..|++|.++..||++||+
T Consensus 171 ~~~~~~~~~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm 250 (491)
T KOG0738|consen 171 NEQPHASLKGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLM 250 (491)
T ss_pred cCCcccccccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeee
Confidence 111111223445666666555 8899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHh
Q 010975 255 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS 334 (496)
Q Consensus 255 ~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~ 334 (496)
+||||||||+||+|+|.+++..|+.|+.+.+.++|.|++++.++-+|+.|+.+.|++|||||||+|+..|+.. .+|+.+
T Consensus 251 ~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaS 329 (491)
T KOG0738|consen 251 VGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEAS 329 (491)
T ss_pred eCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997765 789999
Q ss_pred hhhhhhhhhhccCccccCcE---EEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCccee
Q 010975 335 RRLKTELLIQMDGLTQSDEL---VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLL 411 (496)
Q Consensus 335 ~~i~~~Ll~~ld~~~~~~~~---viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~l 411 (496)
+++.++||.+|||+...... |+|+|+||.||+||++++|||++.|++|+|+.+.|..+++..++......+++++.+
T Consensus 330 RRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~l 409 (491)
T KOG0738|consen 330 RRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDL 409 (491)
T ss_pred HHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHH
Confidence 99999999999999766555 999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc-chhhhhhhhcccc
Q 010975 412 VERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADY 490 (496)
Q Consensus 412 a~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~-~~~~~~~~~~~~~ 490 (496)
++.++||||+||..+|++|++.++||.+..+..+.......+.++ .|++++||+.|+++++||++ .++.+|++|...|
T Consensus 410 ae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~ef 488 (491)
T KOG0738|consen 410 AERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEF 488 (491)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887776655444444444 68999999999999999999 6799999999999
Q ss_pred ccc
Q 010975 491 GSE 493 (496)
Q Consensus 491 g~~ 493 (496)
||.
T Consensus 489 GS~ 491 (491)
T KOG0738|consen 489 GSC 491 (491)
T ss_pred cCC
Confidence 984
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-48 Score=408.16 Aligned_cols=270 Identities=43% Similarity=0.665 Sum_probs=252.2
Q ss_pred HHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 201 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 201 ~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
+..|+...+.|+++|+||+|++++|+.|++.+.+|.++|+.|.+. +.+++|||||||||||||++||++|++.+.+|+.
T Consensus 419 sa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 419 SALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred hhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence 345666777899999999999999999999999999999999987 6999999999999999999999999999999999
Q ss_pred eecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEe
Q 010975 280 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 359 (496)
Q Consensus 280 v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 359 (496)
+.+.++.++|+|++|+.++.+|++|+...|+|||+||||.++..|++.. +++.++++++||..|||+... .+|+|||
T Consensus 499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~--~~v~~RVlsqLLtEmDG~e~~-k~V~ViA 575 (693)
T KOG0730|consen 499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS--SGVTDRVLSQLLTEMDGLEAL-KNVLVIA 575 (693)
T ss_pred ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc--cchHHHHHHHHHHHccccccc-CcEEEEe
Confidence 9999999999999999999999999999999999999999999987433 388899999999999999765 4599999
Q ss_pred ccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHH
Q 010975 360 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437 (496)
Q Consensus 360 tTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR 437 (496)
+||+|+.||++++| ||++.|++|+|+.+.|.+|++.++++++...+++++.||+.|+||||+||..+|++|+..++++
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRE 655 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccc
Q 010975 438 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNAD 489 (496)
Q Consensus 438 ~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~ 489 (496)
.++ ...|+++||++|++.++|+.+. .++.|++|.+.
T Consensus 656 ~i~----------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 656 SIE----------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred hcc----------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 654 1238999999999999999997 57999998765
No 3
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-46 Score=363.03 Aligned_cols=298 Identities=49% Similarity=0.841 Sum_probs=265.3
Q ss_pred HHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 194 ETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+..++...+...++.+.|+++|+|+.|++.+|+.|+|.+..|.+.|.+|.....|++++||||||||||+.||+++|.+.
T Consensus 111 e~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 111 EKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 34556666777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975 274 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 353 (496)
Q Consensus 274 ~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 353 (496)
+..|+.|+.++++++|.|++++.++++|+.|+.++|+||||||||.+++.|.+. +++.++++..+||.+|+|+-....
T Consensus 191 nSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 191 NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred CCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhccccCCC
Confidence 999999999999999999999999999999999999999999999999887654 677889999999999999988888
Q ss_pred EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhc
Q 010975 354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAM 432 (496)
Q Consensus 354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~ 432 (496)
.|+|+++||-||.||.+++|||++.|++|+|+...|..+++.++...+.. .+.++.+|+++|+||+|+||.-+++.|.+
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 99999999999999999999999999999999999999999999877665 46678999999999999999999999999
Q ss_pred cHHHHHHHHhh-----cc------ccC----CCC--------------CCCCCCCCCCchhHHHHhhcCCCCccc-hhhh
Q 010975 433 QPLRRLMVLLE-----GR------QEV----APD--------------DELPQIGPIRPEDVEIALKNTRPSAHL-HAHR 482 (496)
Q Consensus 433 ~a~rR~~~~le-----~~------~~i----~~~--------------~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~ 482 (496)
..+|+.....- +- ... .+. +.+ -..+||+.||.+++..++|.... ++.+
T Consensus 349 ePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl-~eP~vt~~D~~k~l~~tkPTvn~~Dl~k 427 (439)
T KOG0739|consen 349 EPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKL-LEPPVTMRDFLKSLSRTKPTVNEDDLLK 427 (439)
T ss_pred hhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhc-cCCCccHHHHHHHHhhcCCCCCHHHHHH
Confidence 99998754221 10 000 000 111 12369999999999999999986 6999
Q ss_pred hhhhcccccccc
Q 010975 483 YEKFNADYGSEI 494 (496)
Q Consensus 483 ~~~~~~~~g~~~ 494 (496)
.++|.++||.+.
T Consensus 428 ~~~Ft~dFGqEg 439 (439)
T KOG0739|consen 428 HEKFTEDFGQEG 439 (439)
T ss_pred HHHHHHhhccCC
Confidence 999999999863
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-47 Score=378.97 Aligned_cols=251 Identities=39% Similarity=0.639 Sum_probs=230.8
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 284 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~ 284 (496)
...+.|.++++||+|+++.+++|+|.+..|+++|++|... +.||+|||||||||||||+||||+|++.+..|+.+.+++
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 4567899999999999999999999999999999999987 999999999999999999999999999999999999999
Q ss_pred ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975 285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 363 (496)
Q Consensus 285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~ 363 (496)
++.+|+|+..+.++.+|..|+..+||||||||||+++++|.+... .....++..-+||.+|||+..++ +|-||++||+
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~-nvKVI~ATNR 299 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG-NVKVIMATNR 299 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC-CeEEEEecCC
Confidence 999999999999999999999999999999999999998864432 22334566778999999998755 4889999999
Q ss_pred cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975 364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 441 (496)
Q Consensus 364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~ 441 (496)
++.|||||+| ||++.|+||+|+.+.|.+|++.+.+++....+++++.+++.++|+||+||+++|.+|++.|+|+..
T Consensus 300 ~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R-- 377 (406)
T COG1222 300 PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR-- 377 (406)
T ss_pred ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc--
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999621
Q ss_pred hhccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975 442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 475 (496)
Q Consensus 442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps 475 (496)
..+|++||.+|.+++...
T Consensus 378 ----------------~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 378 ----------------DEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred ----------------CeecHHHHHHHHHHHHhc
Confidence 238999999999887543
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-47 Score=396.08 Aligned_cols=291 Identities=33% Similarity=0.573 Sum_probs=260.3
Q ss_pred HHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975 197 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKT 275 (496)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~ 275 (496)
.+..+..|+.....|+++|+||+|+++++.+|..++.+|.++|+.|..+ +..|.|||||||||||||.||+|+|++.|.
T Consensus 492 ~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 492 KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC
Confidence 3344567888888999999999999999999999999999999999987 888999999999999999999999999999
Q ss_pred eeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEE
Q 010975 276 TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 355 (496)
Q Consensus 276 ~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~v 355 (496)
+|+.|.+.+|.++|+|++++.++.+|..|+...|||||+||+|.|.+.|+... ...+.+++++||..|||+..+.+ |
T Consensus 572 NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~g-V 648 (802)
T KOG0733|consen 572 NFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRG-V 648 (802)
T ss_pred ceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccc-e
Confidence 99999999999999999999999999999999999999999999999987654 56678999999999999987665 8
Q ss_pred EEEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCC--CCCCCCCCCcceeeeccc--CCcCCchhhcchh
Q 010975 356 FVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP--SQTGEESLPYDLLVERTE--GYSGSDIRLVSKE 429 (496)
Q Consensus 356 iVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~--~~~~~~~~~l~~la~~t~--g~s~~dI~~l~~~ 429 (496)
.||++||+|+.+|+|++| ||++.+++++|+.++|..|++.+.+ +.+...+++++++|+.+. ||||+||..||++
T Consensus 649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 899999999999999999 9999999999999999999999998 677788999999998877 9999999999999
Q ss_pred hhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccc
Q 010975 430 AAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 492 (496)
Q Consensus 430 A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~ 492 (496)
|++.++++.+...+....-.... .....+|..||++|+++++||.++ +-..|+..++.||.
T Consensus 729 Asi~AL~~~~~~~~~~~~~~~~~--~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 729 ASILALRESLFEIDSSEDDVTVR--SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSL 790 (802)
T ss_pred HHHHHHHHHHhhccccCccccee--eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcc
Confidence 99999998876443332211111 012347889999999999999996 57999999999884
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-46 Score=395.24 Aligned_cols=283 Identities=32% Similarity=0.552 Sum_probs=260.0
Q ss_pred hCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
.+.|+++|+||+|++++|..|.+.+..|+++|++|..++.+..|||||||||||||.+|||+|.+++..|+.|.+.++..
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc-cCcEEEEEeccCCccc
Q 010975 288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAATNLPWE 366 (496)
Q Consensus 288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~viVIatTn~p~~ 366 (496)
.|+|++|+++|++|++|+..+|||||+||+|+++++|+..+....+.++++++||..||++.. ....|+||++||+|+.
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 999999999999999999999999999999999999998888889999999999999999986 6677999999999999
Q ss_pred ccHHHHH--HhhhhhcccCC-CHHHHHHHHHhhCCCCCCCCCCCcceeeeccc-CCcCCchhhcchhhhccHHHHHHHHh
Q 010975 367 LDAAMLR--RLEKRILVPLP-DTEARRAMFESLLPSQTGEESLPYDLLVERTE-GYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 367 Ld~aL~r--Rf~~~I~~~~P-~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~-g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
||++|+| ||++.++++++ |.+.+..+++...++...+.++++.++|+.+. .|||+|+..+|..|++.|++|.++.+
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~i 903 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDI 903 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999887 67778889999999999999999999999874 79999999999999999999999888
Q ss_pred hccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccccc
Q 010975 443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 491 (496)
Q Consensus 443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g 491 (496)
+....-. .+..+....|++|||.+++++.+||.++ ++.+|+...+.|.
T Consensus 904 e~g~~~~-~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 904 ESGTISE-EEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred hhccccc-cccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 7664322 2222344569999999999999999996 6899988877763
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-43 Score=369.54 Aligned_cols=282 Identities=35% Similarity=0.532 Sum_probs=249.4
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
..++++|+|++|+++...+|.+++.. +++|+.|..+ +.|++|||||||||||||+||+++|.+++.||+.+++.++++
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 34588999999999999999999887 8999988876 899999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc---CcEEEEEeccCCc
Q 010975 288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS---DELVFVLAATNLP 364 (496)
Q Consensus 288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~---~~~viVIatTn~p 364 (496)
.+.|+++++++.+|+.|..+.|||+||||||.+.++|... ..+..++++.+|+..||++... +..|+||++||+|
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 9999999999999999999999999999999999998874 4556699999999999998654 5679999999999
Q ss_pred ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975 365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
+.||++|+| ||++.|.+..|+..+|.+||+.+++......+.++..+|+.|.||.|+|+.+||.+|+..+++|.++..
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~ 419 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQS 419 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999988744
Q ss_pred hccccCCC----------------------------------------CC----CCCCCCCCCchhHHHHhhcCCCCccc
Q 010975 443 EGRQEVAP----------------------------------------DD----ELPQIGPIRPEDVEIALKNTRPSAHL 478 (496)
Q Consensus 443 e~~~~i~~----------------------------------------~~----~~~~~~~It~eDf~~Al~~~~Ps~~~ 478 (496)
+.-....+ .+ +......|+++||+.|+..+|||+.+
T Consensus 420 ~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakR 499 (802)
T KOG0733|consen 420 SSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKR 499 (802)
T ss_pred cCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhc
Confidence 41000000 00 11123358999999999999999998
Q ss_pred h---hhhhhhhccccccc
Q 010975 479 H---AHRYEKFNADYGSE 493 (496)
Q Consensus 479 ~---~~~~~~~~~~~g~~ 493 (496)
+ ...-..|.+..|.+
T Consensus 500 EGF~tVPdVtW~dIGaL~ 517 (802)
T KOG0733|consen 500 EGFATVPDVTWDDIGALE 517 (802)
T ss_pred ccceecCCCChhhcccHH
Confidence 6 37788888877654
No 8
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-42 Score=346.10 Aligned_cols=282 Identities=40% Similarity=0.691 Sum_probs=252.1
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
..-.++|+||.|++.+++.+++.+..|+++|++|..+ ..+++|+||+||||||||++|+++|++.+.+|+.|+.+.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 3446789999999999999999999999999999654 78899999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc-EEEEEeccCCcc
Q 010975 287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE-LVFVLAATNLPW 365 (496)
Q Consensus 287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~-~viVIatTn~p~ 365 (496)
++|.|+.++.++.+|..|.+.+|+||||||+|.+.+.| ...+|++.+.+.++|....||+....+ +|+|+++||+|.
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R--~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR--RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc--ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999999998 357899999999999999999976554 899999999999
Q ss_pred cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh--
Q 010975 366 ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE-- 443 (496)
Q Consensus 366 ~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le-- 443 (496)
++|.++.||+...++++.|+.++|..|++-+++......++|+.++|..|+||||+||..+|+.|+..++|+.+..-.
T Consensus 243 DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 243 DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887530
Q ss_pred -ccc-cCCCCCCCC------CCCCCCchhHHHHhhcCCCCccc---hhhhhhhhcccccc
Q 010975 444 -GRQ-EVAPDDELP------QIGPIRPEDVEIALKNTRPSAHL---HAHRYEKFNADYGS 492 (496)
Q Consensus 444 -~~~-~i~~~~~~~------~~~~It~eDf~~Al~~~~Ps~~~---~~~~~~~~~~~~g~ 492 (496)
... .+.+....+ ..++++++||.+|...+-++... .....+.|++.||-
T Consensus 323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 011 111111111 15889999999999999988653 36889999998874
No 9
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=336.20 Aligned_cols=288 Identities=52% Similarity=0.819 Sum_probs=258.6
Q ss_pred HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 277 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~ 277 (496)
....+..++....+++.|+|+.|++.+|+.+.+++.+|..+++.|.....+.+++||.||||+|||+|+++||.+++..|
T Consensus 135 ~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atf 214 (428)
T KOG0740|consen 135 LIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATF 214 (428)
T ss_pred hhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceE
Confidence 34456678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc-CcEEE
Q 010975 278 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-DELVF 356 (496)
Q Consensus 278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~-~~~vi 356 (496)
+.++++++.++|+|+.++.++.+|..|+..+|+|+||||+|+++..| .+.+++.++++..+++..+++.... ..+|+
T Consensus 215 f~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R--s~~e~e~srr~ktefLiq~~~~~s~~~drvl 292 (428)
T KOG0740|consen 215 FNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR--SDNEHESSRRLKTEFLLQFDGKNSAPDDRVL 292 (428)
T ss_pred eeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc--CCcccccchhhhhHHHhhhccccCCCCCeEE
Confidence 99999999999999999999999999999999999999999999998 3457778889999999998887544 45899
Q ss_pred EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975 357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 435 (496)
Q Consensus 357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~ 435 (496)
||+|||.||.+|++++|||..++++|.|+.+.|..+|+.++.+.+.. .+.+++.+++.|+||+++||.++|++|++...
T Consensus 293 vigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~ 372 (428)
T KOG0740|consen 293 VIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPL 372 (428)
T ss_pred EEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCch
Confidence 99999999999999999999999999999999999999999888443 45678899999999999999999999999998
Q ss_pred HHHHHH--hhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccccc
Q 010975 436 RRLMVL--LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 494 (496)
Q Consensus 436 rR~~~~--le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~~ 494 (496)
+..... ++ .+.. ...++++..||+.|++.++|+.+. .+.+|.+|+..||+.-
T Consensus 373 r~~~~~~~~~---~~~~----~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 373 RELGGTTDLE---FIDA----DKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSSE 427 (428)
T ss_pred hhcccchhhh---hcch----hccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcccc
Confidence 876552 22 1111 234679999999999999999997 5899999999999863
No 10
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3e-39 Score=363.41 Aligned_cols=288 Identities=41% Similarity=0.651 Sum_probs=250.4
Q ss_pred hhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 203 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 203 ~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.++.....|.++|+|++|++.+|+.|.+.+.+++.+++.+... ..+++++||+||||||||++|+++|++++.+|+.++
T Consensus 440 ~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~ 519 (733)
T TIGR01243 440 IREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR 519 (733)
T ss_pred cchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 3455556789999999999999999999999999999988875 778899999999999999999999999999999999
Q ss_pred cccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975 282 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 361 (496)
Q Consensus 282 ~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT 361 (496)
++++.++|+|++++.++.+|..|+...|+||||||+|.+++.++... .....++++++|+..||++... ..++||+||
T Consensus 520 ~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~-~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aT 597 (733)
T TIGR01243 520 GPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF-DTSVTDRIVNQLLTEMDGIQEL-SNVVVIAAT 597 (733)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC-CccHHHHHHHHHHHHhhcccCC-CCEEEEEeC
Confidence 99999999999999999999999999999999999999998875432 3445678899999999998654 458899999
Q ss_pred CCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975 362 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 439 (496)
Q Consensus 362 n~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~ 439 (496)
|+|+.+|++++| ||++.+++++|+.++|.+||+.+..+.....+.+++.+|+.++||+|+||..+|++|++.++++..
T Consensus 598 n~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~ 677 (733)
T TIGR01243 598 NRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESI 677 (733)
T ss_pred CChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 999999999999999999999999888888888999999999999999999999999999999876
Q ss_pred HHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccc
Q 010975 440 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 492 (496)
Q Consensus 440 ~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~ 492 (496)
...................+|+++||..|+++++||.++ ++..|++|.+.||.
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 678 GSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred hhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 533211110000111123469999999999999999997 58999999999974
No 11
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-39 Score=332.40 Aligned_cols=241 Identities=35% Similarity=0.568 Sum_probs=218.6
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 289 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~ 289 (496)
.+++|+|+-|.|++|++|.|++.. ++.|.-|.++ ...|+||||+||||||||+||||+|.+.+.||+..+++++-..|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 478899999999999999997754 6677777776 77889999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH
Q 010975 290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 369 (496)
Q Consensus 290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~ 369 (496)
+|...++++.+|..|+...||||||||||.++++|..... ...++.+++||..|||+.... .|+||++||.|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--~y~kqTlNQLLvEmDGF~qNe-GiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--HYAKQTLNQLLVEMDGFKQNE-GIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH--HHHHHHHHHHHHHhcCcCcCC-ceEEEeccCChhhhhH
Confidence 9999999999999999999999999999999998765433 377999999999999997654 5889999999999999
Q ss_pred HHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975 370 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 370 aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
+|.| ||+++|.+|.||..-|.+|++.|+.+.....++|..-+|+-|.||+|+|+.++++.|+..|... +.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------ga-- 526 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------GA-- 526 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc------Cc--
Confidence 9999 9999999999999999999999999999999999999999999999999999999999887552 11
Q ss_pred CCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975 448 VAPDDELPQIGPIRPEDVEIALKNTR 473 (496)
Q Consensus 448 i~~~~~~~~~~~It~eDf~~Al~~~~ 473 (496)
..+||.|++.|-.++-
T Consensus 527 ----------~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 527 ----------EMVTMKHLEFAKDRIL 542 (752)
T ss_pred ----------ccccHHHHhhhhhhee
Confidence 2389999999887774
No 12
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=297.81 Aligned_cols=247 Identities=33% Similarity=0.483 Sum_probs=210.6
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 288 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~ 288 (496)
..++.+++|++|++++|+.-.-+ ...+.+|+.|..+. |++||+|||||||||++|+++|++.+.|++.+.+.++.++
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli-~~yLenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLI-MEYLENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHH-HHHhhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 45778899999999999875433 33456677776663 5899999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975 289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 368 (496)
Q Consensus 289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld 368 (496)
++|...+.++++++.|+...|||+||||+|.++-+|+-.....+ ...++++||..|||+.. +..|+.||+||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGD-VsEiVNALLTelDgi~e-neGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGD-VSEIVNALLTELDGIKE-NEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhccc-HHHHHHHHHHhccCccc-CCceEEEeecCChhhcC
Confidence 99999999999999999999999999999999988754333222 35678999999999984 45588999999999999
Q ss_pred HHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhh-cchhhhccHHHHHHHHhhcccc
Q 010975 369 AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL-VSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 369 ~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~-l~~~A~~~a~rR~~~~le~~~~ 447 (496)
+++++||+..|+|.+|+.+||.+|++.+++..+...+.+++.+++.+.|+||+||.. +++.|..+|+.+ ++
T Consensus 269 ~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e------d~-- 340 (368)
T COG1223 269 PAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE------DR-- 340 (368)
T ss_pred HHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh------ch--
Confidence 999999999999999999999999999999999999999999999999999999976 445555555442 11
Q ss_pred CCCCCCCCCCCCCCchhHHHHhhcCCCCccc
Q 010975 448 VAPDDELPQIGPIRPEDVEIALKNTRPSAHL 478 (496)
Q Consensus 448 i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~ 478 (496)
..|+.+|++.|+++.++....
T Consensus 341 ----------e~v~~edie~al~k~r~~r~~ 361 (368)
T COG1223 341 ----------EKVEREDIEKALKKERKRRAP 361 (368)
T ss_pred ----------hhhhHHHHHHHHHhhccccCC
Confidence 238999999999987766543
No 13
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-37 Score=330.99 Aligned_cols=257 Identities=46% Similarity=0.725 Sum_probs=233.6
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCcccccc-ccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 283 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~-~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s 283 (496)
+.....+.++|+|++|++.+|+.+.+.+..++.+++.+.. ++.+++++||+||||||||++|+++|.+++.+|+.+..+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 3445678999999999999999999999999999998877 478888999999999999999999999999999999999
Q ss_pred cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975 284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 363 (496)
Q Consensus 284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~ 363 (496)
++.++|+|+++++++.+|..|+..+||||||||+|++.+.++..... ...+++++++..++++....+ |+||++||.
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~--~~~r~~~~lL~~~d~~e~~~~-v~vi~aTN~ 387 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG--SGRRVVGQLLTELDGIEKAEG-VLVIAATNR 387 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch--HHHHHHHHHHHHhcCCCccCc-eEEEecCCC
Confidence 99999999999999999999999999999999999999987654332 226899999999999876554 889999999
Q ss_pred cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCC--CCCCCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975 364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 439 (496)
Q Consensus 364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~--~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~ 439 (496)
|+.+|++++| ||+..+++++|+.++|.+|++.++..... ..+.++..+++.++||+++||..+|++|++.++++..
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999986554 4678899999999999999999999999999998754
Q ss_pred HHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchhhhhhhh
Q 010975 440 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF 486 (496)
Q Consensus 440 ~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~~~~~~~ 486 (496)
..++|++||..|+++++|+.. |++|
T Consensus 468 -----------------~~~~~~~~~~~a~~~~~p~~~-----~~~~ 492 (494)
T COG0464 468 -----------------RREVTLDDFLDALKKIKPSVT-----YEEW 492 (494)
T ss_pred -----------------cCCccHHHHHHHHHhcCCCCC-----hhhc
Confidence 135899999999999999987 8888
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=289.66 Aligned_cols=253 Identities=37% Similarity=0.586 Sum_probs=228.4
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 283 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s 283 (496)
.+.++.|+.+++=++|++..++.++|.+..|.++|++|..+ +..|+|+|||||||||||.||+++|+...+.|++++++
T Consensus 136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgs 215 (404)
T KOG0728|consen 136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 215 (404)
T ss_pred HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH
Confidence 35667899999999999999999999999999999999987 88899999999999999999999999999999999999
Q ss_pred cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc--chhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975 284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 361 (496)
Q Consensus 284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT 361 (496)
+++.+|+|+..+.++.+|-.|+...|+|||.||||++++.|.++. ++++. ++..-+|++++||+.... ++-||++|
T Consensus 216 elvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsev-qrtmlellnqldgfeatk-nikvimat 293 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEV-QRTMLELLNQLDGFEATK-NIKVIMAT 293 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHH-HHHHHHHHHhcccccccc-ceEEEEec
Confidence 999999999999999999999999999999999999998875433 33333 455567899999997654 47789999
Q ss_pred CCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975 362 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 439 (496)
Q Consensus 362 n~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~ 439 (496)
|+.+-+|++|+| |+++.|+||+|+.+.|.+|++.+-+++.....+++..+|+...|.+|+++..+|.+|.+.++|+..
T Consensus 294 nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr 373 (404)
T KOG0728|consen 294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR 373 (404)
T ss_pred cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999998521
Q ss_pred HHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975 440 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 477 (496)
Q Consensus 440 ~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~ 477 (496)
..+|+|||+-|..++-...+
T Consensus 374 ------------------vhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 374 ------------------VHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred ------------------ccccHHHHHHHHHHHHhccc
Confidence 35899999999988754443
No 15
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=321.14 Aligned_cols=239 Identities=34% Similarity=0.615 Sum_probs=220.6
Q ss_pred Hhhhhhh-CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 202 LCRDIIR-GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 202 ~~~~~~~-~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
.+|.+.. +.....|+|++|+.++|+.|.+.+.+|.+||.+|... ++.+.|+|||||||||||.||.++|..++.+|+.
T Consensus 652 aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis 731 (952)
T KOG0735|consen 652 ALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS 731 (952)
T ss_pred HhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE
Confidence 4455443 3445899999999999999999999999999999886 7788899999999999999999999999999999
Q ss_pred eecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEe
Q 010975 280 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 359 (496)
Q Consensus 280 v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 359 (496)
+.+.++.++|+|++++.+|.+|.+|+..+|||||+||+|+++++|+.+ ..++.++++++||.+|||... -..|.|+|
T Consensus 732 vKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD--sTGVTDRVVNQlLTelDG~Eg-l~GV~i~a 808 (952)
T KOG0735|consen 732 VKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD--STGVTDRVVNQLLTELDGAEG-LDGVYILA 808 (952)
T ss_pred ecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC--CCCchHHHHHHHHHhhccccc-cceEEEEE
Confidence 999999999999999999999999999999999999999999998754 456789999999999999987 45589999
Q ss_pred ccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHH
Q 010975 360 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437 (496)
Q Consensus 360 tTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR 437 (496)
+|.+|+.+||||+| |+++.++.+.|+..+|.+|++.+........+++++.+|..|+||+|+|+..++-.|.+.++.+
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999888999999999999999999999999999999999998
Q ss_pred HHHHhh
Q 010975 438 LMVLLE 443 (496)
Q Consensus 438 ~~~~le 443 (496)
.+....
T Consensus 889 ~l~~~~ 894 (952)
T KOG0735|consen 889 ILKRED 894 (952)
T ss_pred HHHhcC
Confidence 876443
No 16
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-36 Score=287.34 Aligned_cols=249 Identities=38% Similarity=0.627 Sum_probs=225.5
Q ss_pred hCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
.+.|.+++.|++|++-.|++++|.+..|+.+.+++.+. +.||+|||+|||||||||+||+++|+.....|+++.+++++
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 35688999999999999999999999999999999886 89999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975 287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~ 365 (496)
.+|.|+..+.++.+|..|+.+.|+||||||+|.++.+|-+.+. ......+++-+|+++|||+.... +|-||++||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~-nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT-NVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc-ceEEEEecCccc
Confidence 9999999999999999999999999999999999998754332 23345677888999999997544 588999999999
Q ss_pred cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975 366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443 (496)
Q Consensus 366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le 443 (496)
.+||+|+| |+++.|+||+|+..+++-++..+..++....+++++.+..+-+..+++||..+|++|.+.++|+.
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n----- 380 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN----- 380 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999852
Q ss_pred ccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975 444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 475 (496)
Q Consensus 444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps 475 (496)
+ -.+...||+++-+.....
T Consensus 381 -r------------yvvl~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 381 -R------------YVVLQKDFEKAYKTVVKK 399 (408)
T ss_pred -c------------eeeeHHHHHHHHHhhcCC
Confidence 1 237889999988766443
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=293.71 Aligned_cols=248 Identities=36% Similarity=0.611 Sum_probs=224.7
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
.++.|..++.|++|++..+++|+|.+..|+.+|+++... +.||+||+|||+||||||.||+|+|++....|+++.++++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 456788899999999999999999999999999999876 8999999999999999999999999999999999999999
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc--chhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 363 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~ 363 (496)
..+|.|+..+.++++|..|..++|+|+||||||.+..+|-+.. ++.+ .++..-+||+++||+..++. |-||++||+
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerE-iQrtmLELLNQldGFdsrgD-vKvimATnr 333 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGERE-IQRTMLELLNQLDGFDSRGD-VKVIMATNR 333 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHH-HHHHHHHHHHhccCccccCC-eEEEEeccc
Confidence 9999999999999999999999999999999999998875432 3333 34444578999999988665 789999999
Q ss_pred cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975 364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 441 (496)
Q Consensus 364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~ 441 (496)
.+.|||+|.| |+++.|.|+.|+...++.|+..+..++....+++++.+...-+.+||+||.++|.+|.+.|+|...
T Consensus 334 ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR-- 411 (440)
T KOG0726|consen 334 IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR-- 411 (440)
T ss_pred ccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH--
Confidence 9999999999 999999999999999999999999999999999999999888999999999999999999998532
Q ss_pred hhccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975 442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 474 (496)
Q Consensus 442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P 474 (496)
..+|++||.+|.+++--
T Consensus 412 ----------------m~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 412 ----------------MKVTMEDFKKAKEKVLY 428 (440)
T ss_pred ----------------hhccHHHHHHHHHHHHH
Confidence 13899999999887643
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.9e-36 Score=314.40 Aligned_cols=251 Identities=39% Similarity=0.640 Sum_probs=222.6
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
..+.|+++|+||+|++.+|++|.+.+..|+.+++.+... +.+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 346799999999999999999999999999999998875 7889999999999999999999999999999999999999
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
..+|.|+.+..++.+|..++...|+||||||+|.++..+.+... ......+++.+++..++++.... .+.||++||++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~-~v~VI~aTN~~ 294 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIMATNRA 294 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC-CEEEEEecCCc
Confidence 99999999999999999999999999999999999877643221 12234566788889998876544 47789999999
Q ss_pred ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975 365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
+.+|++++| ||+..|+++.|+.++|..|++.++.+.....++++..++..++||+|+||..+|++|++.++++-
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~---- 370 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN---- 370 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999998888888999999999999999999999999999998751
Q ss_pred hccccCCCCCCCCCCCCCCchhHHHHhhcCCCCc
Q 010975 443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 476 (496)
Q Consensus 443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~ 476 (496)
...|+++||.+|++++....
T Consensus 371 --------------~~~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 371 --------------RYVILPKDFEKGYKTVVRKT 390 (398)
T ss_pred --------------CCccCHHHHHHHHHHHHhcc
Confidence 12489999999999986653
No 19
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-36 Score=285.45 Aligned_cols=249 Identities=34% Similarity=0.578 Sum_probs=225.2
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
..+.|...++|++|+++.+++|.|.+..|+.+++.|..+ +.||+|+|+|||||||||.+||+.|.+.+..|..+.+..+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 356688889999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc--chhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 363 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~ 363 (496)
+..|+|...+.++..|..|+...|+||||||+|.++.+|.+.. ++.+ .++..-+|++++||+... ..|-||++||+
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE-VQRTMLELLNQLDGFss~-~~vKviAATNR 319 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE-VQRTMLELLNQLDGFSSD-DRVKVIAATNR 319 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH-HHHHHHHHHHhhcCCCCc-cceEEEeeccc
Confidence 9999999999999999999999999999999999998875332 2333 344556788999999765 45889999999
Q ss_pred cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975 364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 441 (496)
Q Consensus 364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~ 441 (496)
.+-+||+|+| |+++.|+||.|+.+.|.+|++.+.+++....+++++++++.|++|.|+...++|-+|.+.++||-.
T Consensus 320 vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a-- 397 (424)
T KOG0652|consen 320 VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA-- 397 (424)
T ss_pred ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc--
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999721
Q ss_pred hhccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975 442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 475 (496)
Q Consensus 442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps 475 (496)
..++.+||...+.+++..
T Consensus 398 ----------------tev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 398 ----------------TEVTHEDFMEGILEVQAK 415 (424)
T ss_pred ----------------ccccHHHHHHHHHHHHHh
Confidence 238999999998887644
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.8e-35 Score=315.79 Aligned_cols=255 Identities=24% Similarity=0.351 Sum_probs=216.6
Q ss_pred CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 289 (496)
Q Consensus 210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~ 289 (496)
.++.+|+||+|++.+|+.+.+....... .....++.+++|+||+||||||||++|+++|++++.+++.++++.+.++|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~~--~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSFSK--QASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHhhH--HHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 3578899999999999999875432211 11122467789999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH
Q 010975 290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 369 (496)
Q Consensus 290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~ 369 (496)
+|+++.+++.+|..++..+||||||||||.+...++. ..+.....+++..++..|++ ....|+||+|||+++.+|+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~-~~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES-KGDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC-CCCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCH
Confidence 9999999999999999999999999999999875432 23345667888899988874 3456899999999999999
Q ss_pred HHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCC--CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975 370 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE--ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445 (496)
Q Consensus 370 aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~--~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~ 445 (496)
+++| ||+..++++.|+.++|.+|++.++.+.... .+.+++.+++.|+||||+||+.+|.+|+..+..+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~-------- 447 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE-------- 447 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc--------
Confidence 9998 999999999999999999999999876533 4677889999999999999999999998776542
Q ss_pred ccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc---chhhhhhhhccc
Q 010975 446 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH---LHAHRYEKFNAD 489 (496)
Q Consensus 446 ~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~---~~~~~~~~~~~~ 489 (496)
..++|.+||..|++++.|++. +++..+++|...
T Consensus 448 -----------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 448 -----------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred -----------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 135899999999999999864 358999999874
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-36 Score=324.51 Aligned_cols=245 Identities=38% Similarity=0.604 Sum_probs=218.8
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
..+.++|.|+.|.+++|++|.|++.. +++|+.|..+ ...|+|+||+||||||||.||+|+|.+.|.||+.+++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34568999999999999999998765 5677766665 899999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC--CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975 288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~--~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~ 365 (496)
.++|....+++.+|..|+.+.|||+||||||.++..|++ ....+......+++|+..|||.... ..|+|+++||+++
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPD 461 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCcc
Confidence 999999999999999999999999999999999998852 2234455577889999999999876 6699999999999
Q ss_pred cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975 366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
.+|++|+| ||++.+.++.|+...|.+|++.+++..... .+.++..+|.+|.||+|+||.++|++|+..++|+-.
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~--- 538 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL--- 538 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc---
Confidence 99999999 999999999999999999999999988885 667787899999999999999999999999998622
Q ss_pred hccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975 443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTR 473 (496)
Q Consensus 443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~ 473 (496)
..|+.+||+.|++.+.
T Consensus 539 ---------------~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 539 ---------------REIGTKDLEYAIERVI 554 (774)
T ss_pred ---------------CccchhhHHHHHHHHh
Confidence 3489999999999443
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.3e-35 Score=309.04 Aligned_cols=255 Identities=40% Similarity=0.605 Sum_probs=224.3
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 284 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~ 284 (496)
.....|.++|+||+|++++++.|.+.+..++.+++.+... +.+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 3456789999999999999999999999999999988776 788899999999999999999999999999999999999
Q ss_pred ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch-hHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975 285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNL 363 (496)
Q Consensus 285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~ 363 (496)
+...|.|+.+..++.+|..++...|+||||||+|.++..+...... .....+.+..++..+++..... .+.||+|||.
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~-~v~VI~aTn~ 279 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG-NVKIIAATNR 279 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC-CEEEEEecCC
Confidence 9999999999999999999999999999999999998776543221 1223445567777888765443 5889999999
Q ss_pred cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975 364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 441 (496)
Q Consensus 364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~ 441 (496)
++.+|++++| ||+..|.+++|+.++|.+|++.++.......+.++..++..|+||+++||+.+|++|++.++++.
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~--- 356 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD--- 356 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999998 99999999999999999999999998888778899999999999999999999999999988751
Q ss_pred hhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccch
Q 010975 442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 479 (496)
Q Consensus 442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~ 479 (496)
...|+.+||.+|++.++++...+
T Consensus 357 ---------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ---------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ---------------CCCcCHHHHHHHHHHHhcccccc
Confidence 12489999999999999987654
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-35 Score=282.60 Aligned_cols=265 Identities=35% Similarity=0.568 Sum_probs=231.6
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCC
Q 010975 181 RLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 259 (496)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpG 259 (496)
.++.|+.+..++. +.-..+++.|.+++.|++|..+.++.|+|.+..|+.+|+.|..+ +.||+|+|+|||||
T Consensus 150 qi~lplppkidps--------vtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppg 221 (435)
T KOG0729|consen 150 QIQLPLPPKIDPS--------VTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPG 221 (435)
T ss_pred eEeccCCCCCCCc--------eeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCC
Confidence 3555555555433 22234567899999999999999999999999999999998877 89999999999999
Q ss_pred ChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC--cchhHHhhhh
Q 010975 260 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA--RSEHEASRRL 337 (496)
Q Consensus 260 tGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~--~~~~~~~~~i 337 (496)
||||.+||++|+..+..|+.+-+++++.+|+|+..+.++.+|+.|+..+.||||+||||.+.+.|-+. +++.++ ++.
T Consensus 222 tgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnev-qrt 300 (435)
T KOG0729|consen 222 TGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEV-QRT 300 (435)
T ss_pred CchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHH-HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887543 333443 445
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecc
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERT 415 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t 415 (496)
.-+|+.++||+..+++ +-|+++||+|+.|||+|+| |+++.++|.+|+.+.|..|++.+.+.+....++.++-+++.+
T Consensus 301 mleli~qldgfdprgn-ikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlc 379 (435)
T KOG0729|consen 301 MLELINQLDGFDPRGN-IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLC 379 (435)
T ss_pred HHHHHHhccCCCCCCC-eEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhC
Confidence 5678899999987765 7788999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975 416 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 473 (496)
Q Consensus 416 ~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~ 473 (496)
..-+|++|+.+|.+|.+.++|-.. ...|..||..|+.++.
T Consensus 380 pnstgaeirsvcteagmfairarr------------------k~atekdfl~av~kvv 419 (435)
T KOG0729|consen 380 PNSTGAEIRSVCTEAGMFAIRARR------------------KVATEKDFLDAVNKVV 419 (435)
T ss_pred CCCcchHHHHHHHHhhHHHHHHHh------------------hhhhHHHHHHHHHHHH
Confidence 999999999999999999987321 1268889999988764
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.4e-34 Score=301.04 Aligned_cols=250 Identities=36% Similarity=0.581 Sum_probs=219.6
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
..+.|..+|+||+|+++.++.|.+.+..++.+++++... +.+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 457789999999999999999999999999999988876 7888999999999999999999999999999999999999
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
...|.|+.+..++.+|..+....|+||||||||.+...+..... ......+.+..++..++++.... .+.||++||++
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~-~V~VI~ATNr~ 332 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG-DVKVIMATNRI 332 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC-CeEEEEecCCh
Confidence 99999999999999999999999999999999999887643221 11223445567888888775443 47889999999
Q ss_pred ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975 365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
+.+|++++| ||+..|.|+.|+.++|.+|++.++.+.....+++++.++..++|++++||..+|++|++.|+++-
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~---- 408 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER---- 408 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 999999987 99999999999999999999999998888888899999999999999999999999999998852
Q ss_pred hccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975 443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 475 (496)
Q Consensus 443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps 475 (496)
+ ..||.+||.+|++++...
T Consensus 409 --r------------~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 409 --R------------MKVTQADFRKAKEKVLYR 427 (438)
T ss_pred --C------------CccCHHHHHHHHHHHHhh
Confidence 1 238999999999997543
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=303.48 Aligned_cols=245 Identities=38% Similarity=0.572 Sum_probs=220.1
Q ss_pred hCCCCCccchhhcchHHHHHHhhhhcccccCcccccc-ccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~-~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
+....++|.|+.|.+++|+++.|.+.. ++.|..|.. +...|+|++|+||||||||+||+++|.+.+.||+.++.++++
T Consensus 142 ~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV 220 (596)
T COG0465 142 EDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 220 (596)
T ss_pred ccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh
Confidence 336778999999999999999998755 455555544 478889999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC-cchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975 287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~ 365 (496)
..++|....++|.+|.+|++++|||+||||||.+...|+.+ ++.++.-.+.+++||..|||.. .+..|+|+++||+|+
T Consensus 221 emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-~~~gviviaaTNRpd 299 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-GNEGVIVIAATNRPD 299 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC-CCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999888533 3455666789999999999998 445688999999999
Q ss_pred cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975 366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443 (496)
Q Consensus 366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le 443 (496)
-+|++|+| ||++.|.++.||...|.+|++.+++......++++..+|+.|.|++++|+..++++|+..+.|+-.
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~---- 375 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK---- 375 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC----
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999998621
Q ss_pred ccccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975 444 GRQEVAPDDELPQIGPIRPEDVEIALKNT 472 (496)
Q Consensus 444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~ 472 (496)
..|++.||.+|..++
T Consensus 376 --------------~~i~~~~i~ea~drv 390 (596)
T COG0465 376 --------------KEITMRDIEEAIDRV 390 (596)
T ss_pred --------------eeEeccchHHHHHHH
Confidence 348899999998877
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.5e-33 Score=302.53 Aligned_cols=247 Identities=37% Similarity=0.575 Sum_probs=213.9
Q ss_pred hCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
...|.++|+|++|++++|+++.+++.. +++++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 446788999999999999999998765 5666665543 67789999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975 287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~ 365 (496)
+.+.|..++.++.+|+.++...|+||||||+|.+...++... ..+.....++++|+..||++.... .++||+|||+|+
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~-~v~vI~aTn~~~ 204 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT-GVIVIAATNRPD 204 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC-CeEEEEecCChh
Confidence 999999999999999999999999999999999998765432 223344577889999999886544 488999999999
Q ss_pred cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975 366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443 (496)
Q Consensus 366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le 443 (496)
.+|++++| ||++.+.++.|+.++|.+|++.++.......+.++..++..+.||+++||+.++++|+..+.++.
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~----- 279 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN----- 279 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999988776667788899999999999999999999988766531
Q ss_pred ccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975 444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 474 (496)
Q Consensus 444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P 474 (496)
..+|+.+||+.|+..+..
T Consensus 280 -------------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 280 -------------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred -------------CCCCCHHHHHHHHHHHhc
Confidence 134899999999998754
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.98 E-value=1.4e-32 Score=285.99 Aligned_cols=247 Identities=39% Similarity=0.638 Sum_probs=214.0
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
....|.+.|+||+|+++++++|.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 346789999999999999999999999999999888765 7788999999999999999999999999999999999999
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch-hHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
...+.|+....++.+|..++...|+||||||+|.+...+...... .....+.+..++..+++.... ..+.||+|||.+
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~ 271 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRP 271 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCCh
Confidence 999999999999999999999999999999999998765432211 112234456677777766443 358899999999
Q ss_pred ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975 365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
+.+|+++++ ||+..+.++.|+.++|.+|++.++.......+.++..+++.++||+++||..++++|++.++++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~---- 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE---- 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999997 99999999999999999999999988777777889999999999999999999999999998751
Q ss_pred hccccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975 443 EGRQEVAPDDELPQIGPIRPEDVEIALKNT 472 (496)
Q Consensus 443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~ 472 (496)
...||.+||.+|++++
T Consensus 348 --------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------CCccCHHHHHHHHHHh
Confidence 1248999999999875
No 28
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.6e-32 Score=285.69 Aligned_cols=255 Identities=34% Similarity=0.560 Sum_probs=232.8
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 289 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~ 289 (496)
+++. .+++|.......+.+.+..++.++..+... ..+++++|+|||||||||.+++++|++.+..++.+++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 799999999999999999999999998776 88999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhhhcC-CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975 290 RGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 368 (496)
Q Consensus 290 ~G~~e~~l~~lf~~a~~~~-p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld 368 (496)
.|++++.++..|+++...+ |++|||||+|.+++++..... ..+++..+++..+|+.... ..++|+++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~~-~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKPD-AKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcCc-CcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998765433 6788999999999988744 4588999999999999
Q ss_pred HHHHH-HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975 369 AAMLR-RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 369 ~aL~r-Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
++++| ||+..+.+..|+..+|.+|++.+.+.+....+.++..++..+.||+|+|+..+|++|+..+.|+
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999998887889999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCCCchhHHHHhhcCCCCccch---hhhhhhhccccccc
Q 010975 448 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSE 493 (496)
Q Consensus 448 i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~---~~~~~~~~~~~g~~ 493 (496)
+++||..|+..++||+..+ -..-..|.+..|.+
T Consensus 405 -------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE 440 (693)
T KOG0730|consen 405 -------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLE 440 (693)
T ss_pred -------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHH
Confidence 6778999999999998864 25667788777765
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=6.1e-31 Score=280.90 Aligned_cols=272 Identities=28% Similarity=0.465 Sum_probs=217.8
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcce-------
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTT------- 276 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~------- 276 (496)
.+.+..|+++|+||+|+++.++++++.+..+..+++++... +.+++++|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 34567899999999999999999999999999999998775 7888999999999999999999999998654
Q ss_pred ---eeeeecccccccccCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc
Q 010975 277 ---FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 349 (496)
Q Consensus 277 ---~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 349 (496)
|+.+..+++.++|.|+.++.++.+|+.++.. .|+||||||+|.++..++... .++..+.++++|+..||++.
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhcccc
Confidence 6677778888999999999999999988763 689999999999998765432 23345678899999999987
Q ss_pred ccCcEEEEEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCC-CCCC---------CCC----------
Q 010975 350 QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ-TGEE---------SLP---------- 407 (496)
Q Consensus 350 ~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~-~~~~---------~~~---------- 407 (496)
.. ..++||+|||+++.||++++| ||+..|+|+.|+.++|.+|++.++... +... ..+
T Consensus 330 ~~-~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 330 SL-DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred cC-CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence 54 458899999999999999999 999999999999999999999988642 1100 000
Q ss_pred -------------------cceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHH
Q 010975 408 -------------------YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 468 (496)
Q Consensus 408 -------------------l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~A 468 (496)
-.+....++.+||++|+.+|.+|...++++.+... ...|+++|+..|
T Consensus 409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~--------------~~~~~~~~l~~a 474 (512)
T TIGR03689 409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG--------------QVGLRIEHLLAA 474 (512)
T ss_pred HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC--------------CcCcCHHHHHHH
Confidence 01133457778899999999999999988866311 134899999999
Q ss_pred hhcCCCCccc--hhhhhhhhcccccc
Q 010975 469 LKNTRPSAHL--HAHRYEKFNADYGS 492 (496)
Q Consensus 469 l~~~~Ps~~~--~~~~~~~~~~~~g~ 492 (496)
+..-.....+ --..-++|....|-
T Consensus 475 ~~~e~~~~~~~~~~~~~~~w~~~~~~ 500 (512)
T TIGR03689 475 VLDEFRESEDLPNTTNPDDWARISGK 500 (512)
T ss_pred HHHhhcccccCCCCCCHHHHhhhhCC
Confidence 9876544322 23556678776554
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=2.5e-31 Score=291.97 Aligned_cols=243 Identities=36% Similarity=0.581 Sum_probs=209.7
Q ss_pred CCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 288 (496)
Q Consensus 210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~ 288 (496)
.+.++|+|++|++++|+.+.+.+.. ++.++.+... ...++++||+||||||||++|+++|.+++.+++.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 4567899999999999999998755 5566665544 6778899999999999999999999999999999999999888
Q ss_pred ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC-cchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975 289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 367 (496)
Q Consensus 289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L 367 (496)
+.|.....++.+|..++...|+||||||+|.+...++.. ...+.....++++|+..+|++... ..++||++||+++.+
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~L 334 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDIL 334 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHhh
Confidence 888888899999999999999999999999998776432 223344567788899999987654 458899999999999
Q ss_pred cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975 368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445 (496)
Q Consensus 368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~ 445 (496)
|++++| ||++.+.++.|+.++|.+|++.+++......+.++..++..+.||+++||+.++++|+..+.++-
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~------- 407 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK------- 407 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 999998 99999999999999999999999988777777888999999999999999999999988876541
Q ss_pred ccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975 446 QEVAPDDELPQIGPIRPEDVEIALKNT 472 (496)
Q Consensus 446 ~~i~~~~~~~~~~~It~eDf~~Al~~~ 472 (496)
...||++||+.|+..+
T Consensus 408 -----------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -----------KATITMKEIDTAIDRV 423 (638)
T ss_pred -----------CCCcCHHHHHHHHHHH
Confidence 1248999999999876
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-31 Score=260.63 Aligned_cols=250 Identities=34% Similarity=0.550 Sum_probs=218.0
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 284 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~ 284 (496)
..+...+++|+.+.|.-.....+.+.+..|+..|+++... +.+|++++||||||+|||.+|+++|..++.+++.+..++
T Consensus 122 ~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~ 201 (388)
T KOG0651|consen 122 SHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSA 201 (388)
T ss_pred hhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhh
Confidence 3445567899999999999999999999999999999994 999999999999999999999999999999999999999
Q ss_pred ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975 285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 363 (496)
Q Consensus 285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~ 363 (496)
+.++|.|++.+.+++.|..|+...|||||+||||.+++.+.... ......++.+-.|+++|++... ..+|-+|+|||+
T Consensus 202 lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~-l~rVk~ImatNr 280 (388)
T KOG0651|consen 202 LVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT-LHRVKTIMATNR 280 (388)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh-cccccEEEecCC
Confidence 99999999999999999999999999999999999988764322 2222334445567777887754 445889999999
Q ss_pred cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975 364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 441 (496)
Q Consensus 364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~ 441 (496)
|+.|+++|+| |+++.+++|.|+...|..|++.+..........+.+.+.+.++|+.++|++..|++|.+.+++...
T Consensus 281 pdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~-- 358 (388)
T KOG0651|consen 281 PDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER-- 358 (388)
T ss_pred ccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh--
Confidence 9999999999 999999999999999999999988888777888889999999999999999999999988877421
Q ss_pred hhccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975 442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 474 (496)
Q Consensus 442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P 474 (496)
..+-+|||.++++++.-
T Consensus 359 ----------------~~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 359 ----------------DEVLHEDFMKLVRKQAD 375 (388)
T ss_pred ----------------HHHhHHHHHHHHHHHHH
Confidence 13678899888877643
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=1.1e-30 Score=293.98 Aligned_cols=278 Identities=38% Similarity=0.589 Sum_probs=232.1
Q ss_pred CCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 288 (496)
Q Consensus 210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~ 288 (496)
.++++|+||+|++++++.+.+.+..++.+++.+..+ +.+++++||+||||||||++|+++|++++.+++.+++.++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 477899999999999999999999999999988776 7888999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975 289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 368 (496)
Q Consensus 289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld 368 (496)
+.|..+..++.+|+.+....|+||||||+|.+.+.+.... .+..++++.+|+..++++... ..++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~--~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT--GEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc--chHHHHHHHHHHHHhhccccC-CCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999988765432 233467788999999987654 4578899999999999
Q ss_pred HHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhc--
Q 010975 369 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG-- 444 (496)
Q Consensus 369 ~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~-- 444 (496)
+++++ ||+..+.++.|+.++|.+|++.+........+.+++.+++.+.||+++|+..++++|++.+++|....-..
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 99999999999999999999998888777778889999999999999999999999999999987652110
Q ss_pred cccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchh---hhhhhhccccc
Q 010975 445 RQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYG 491 (496)
Q Consensus 445 ~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~---~~~~~~~~~~g 491 (496)
.....+.+ ......++++||..|++.++|+...+. ..-..|.+..|
T Consensus 409 ~~~~i~~~-~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g 457 (733)
T TIGR01243 409 EAEEIPAE-VLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGG 457 (733)
T ss_pred ccccccch-hcccccccHHHHHHHHhhccccccchhhccccccchhhccc
Confidence 01111111 112245899999999999999975432 22345554444
No 33
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.2e-31 Score=280.50 Aligned_cols=297 Identities=21% Similarity=0.187 Sum_probs=235.8
Q ss_pred CcccCCchhHHHHHhhcCCCceecCCccccccccccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHH
Q 010975 147 HVQNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKR 226 (496)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~ 226 (496)
+.+..+++.++++|++++++++ +++||++|.++.||.+......+...++.++ -.|++|++++|+
T Consensus 269 k~k~~~El~kL~~m~~~SaE~~----ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iL-----------d~dHYGLekVKe 333 (782)
T COG0466 269 KEKAEKELKKLETMSPMSAEAT----VIRNYLDWLLDLPWGKRSKDKLDLKKAEKIL-----------DKDHYGLEKVKE 333 (782)
T ss_pred HHHHHHHHHHHhcCCCCCchHH----HHHHHHHHHHhCCCccccchhhhHHHHHHHh-----------cccccCchhHHH
Confidence 3456788899999999998888 9999999999999999999988888888887 679999999999
Q ss_pred HHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc---------ccCChHHHH
Q 010975 227 LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK---------WRGDSEKLI 297 (496)
Q Consensus 227 ~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~---------~~G~~e~~l 297 (496)
++.|+++.....++. ...-+||+||||+|||+|+++||+.+|+.|++++.+.+.++ |+|++++++
T Consensus 334 RIlEyLAV~~l~~~~------kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrI 407 (782)
T COG0466 334 RILEYLAVQKLTKKL------KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKI 407 (782)
T ss_pred HHHHHHHHHHHhccC------CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHH
Confidence 999999887765543 11348999999999999999999999999999998777653 899999999
Q ss_pred HHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc------------CccccCcEEEEEeccCCcc
Q 010975 298 KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD------------GLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 298 ~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld------------~~~~~~~~viVIatTn~p~ 365 (496)
-+-+.++...+| +++|||||++..+.++++. ++||+.+| ++...-+.|++|||+|..+
T Consensus 408 iQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa---------SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 408 IQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA---------SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred HHHHHHhCCcCC-eEEeechhhccCCCCCChH---------HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence 999999999998 9999999999888666554 33444444 3445567899999999999
Q ss_pred cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975 366 ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445 (496)
Q Consensus 366 ~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~ 445 (496)
.++.+|++|++. |.++.++.+|+.+|.+.++-......+.--..-...++...-.-|+.++++|..++++|.+..+.+.
T Consensus 478 tIP~PLlDRMEi-I~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK 556 (782)
T COG0466 478 TIPAPLLDRMEV-IRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRK 556 (782)
T ss_pred cCChHHhcceee-eeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHH
Confidence 999999999965 9999999999999999998665544222111223444544556778899999999999988876554
Q ss_pred cc--CCCCCCCCCCCCCCchhHHHHhhcCCCCc
Q 010975 446 QE--VAPDDELPQIGPIRPEDVEIALKNTRPSA 476 (496)
Q Consensus 446 ~~--i~~~~~~~~~~~It~eDf~~Al~~~~Ps~ 476 (496)
.. +..... .....++..++.+-|..-+-..
T Consensus 557 ~~~~i~~~~~-k~~~~i~~~~l~~yLG~~~f~~ 588 (782)
T COG0466 557 AAKKILLKKE-KSIVKIDEKNLKKYLGVPVFRY 588 (782)
T ss_pred HHHHHHhcCc-ccceeeCHHHHHHHhCCcccCc
Confidence 32 111111 1113578888888887665443
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.1e-31 Score=270.54 Aligned_cols=266 Identities=29% Similarity=0.425 Sum_probs=221.4
Q ss_pred CCCCccch--hhcchHHHHH-HhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcc-eeeeeeccc
Q 010975 210 SPDVKWES--IKGLENAKRL-LKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASS 284 (496)
Q Consensus 210 ~~~~~l~d--liG~e~vk~~-L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~-~~i~v~~s~ 284 (496)
.|+-+|++ |+|++..-.. .++.++...-.|+...++ ...-+|+|||||||||||.+||.|...++. +=-.|++.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46666776 7888775544 455666666666766665 667789999999999999999999999964 345678999
Q ss_pred ccccccCChHHHHHHHHHHhhhc--------CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975 285 VVSKWRGDSEKLIKVLFELARHH--------APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 356 (496)
Q Consensus 285 l~~~~~G~~e~~l~~lf~~a~~~--------~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 356 (496)
+.++|+|++|.++|.+|..|... .-.||++||||.++..|++..+...+.+.++++||..|||+.. ..+++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq-LNNIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ-LNNIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh-hhcEE
Confidence 99999999999999999988641 2249999999999999998888888999999999999999975 45589
Q ss_pred EEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCC----CCCCCCcceeeecccCCcCCchhhcchhh
Q 010975 357 VLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQT----GEESLPYDLLVERTEGYSGSDIRLVSKEA 430 (496)
Q Consensus 357 VIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~----~~~~~~l~~la~~t~g~s~~dI~~l~~~A 430 (496)
||+-||+.+.+|+||+| ||+..+++.+||+..|.+|++.+.+++. ...++|+.++|..|..|||++|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 9999999999999999999998876654 34688999999999999999999999999
Q ss_pred hccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccch
Q 010975 431 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 479 (496)
Q Consensus 431 ~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~ 479 (496)
...|+.|.+..- ....+.+.+. +...||++||..||.+++|++-..
T Consensus 452 ~S~A~nR~vk~~-~~~~~~~~~~--e~lkV~r~DFl~aL~dVkPAFG~s 497 (744)
T KOG0741|consen 452 QSFAMNRHVKAG-GKVEVDPVAI--ENLKVTRGDFLNALEDVKPAFGIS 497 (744)
T ss_pred HHHHHHhhhccC-cceecCchhh--hheeecHHHHHHHHHhcCcccCCC
Confidence 999999877643 2233333322 234699999999999999997743
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.4e-30 Score=286.21 Aligned_cols=266 Identities=34% Similarity=0.589 Sum_probs=227.0
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeec
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 282 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~ 282 (496)
....+.|++++|++.++..|+|.+..|+.||+.|... +.|++|+|++||||||||..|+++|..+ +..|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 3456789999999999999999999999999999987 8999999999999999999999999988 455777778
Q ss_pred ccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccC
Q 010975 283 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 362 (496)
Q Consensus 283 s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn 362 (496)
.+..++|+|+.++.++.+|++|+..+|+|+|+||||-|++.|...+. .....++..||..|||+..++. |+||++||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgq-VvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQ-VVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCc-eEEEcccC
Confidence 89999999999999999999999999999999999999998765433 2335688999999999987765 88999999
Q ss_pred CcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975 363 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 439 (496)
Q Consensus 363 ~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~ 439 (496)
+|+.+|++++| ||++.++|++|+.+.|..|+..+-.+-..... .-++.+|+.+.||.|+||+.+|.+|++.+++|..
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999 99999999999999999999998766553322 2256699999999999999999999999999876
Q ss_pred HHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccch
Q 010975 440 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 479 (496)
Q Consensus 440 ~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~ 479 (496)
..+.........+. +...++.+||..|+....|+.++.
T Consensus 495 Pq~y~s~~kl~~d~--~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDV--ALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred Ceeecccccccccc--hhhhhhhHhhhhhhhccCCCCCcc
Confidence 65554433222221 122389999999999999987763
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=2e-29 Score=279.24 Aligned_cols=245 Identities=33% Similarity=0.511 Sum_probs=210.6
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 289 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~ 289 (496)
....|+|+.|.+..++++.+.+... ..++.+... ...+++++|+||||||||+++++++.+++.+|+.++++++...+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 4567999999999999999988664 334433332 55678999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC-cchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975 290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 368 (496)
Q Consensus 290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld 368 (496)
.|.....++.+|..++...|+||||||+|.++..++.. ...+....+++++++..||++... ..++||+|||+|+.+|
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~lD 304 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLD 304 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhcC
Confidence 99999999999999999999999999999998876542 223344567889999999988654 4588999999999999
Q ss_pred HHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccc
Q 010975 369 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 446 (496)
Q Consensus 369 ~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~ 446 (496)
++++| ||++.+.++.|+.++|.+|++.++.+.+...+.++..+++.+.||+++||..+|++|+..+.++-
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~-------- 376 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-------- 376 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 99998 99999999999999999999999999888888888899999999999999999999999887640
Q ss_pred cCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975 447 EVAPDDELPQIGPIRPEDVEIALKNTRPS 475 (496)
Q Consensus 447 ~i~~~~~~~~~~~It~eDf~~Al~~~~Ps 475 (496)
...|+++||+.|+..+.+.
T Consensus 377 ----------~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 377 ----------KRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred ----------CCcccHHHHHHHHHHHhcc
Confidence 1248999999999877654
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=9e-29 Score=285.70 Aligned_cols=202 Identities=22% Similarity=0.280 Sum_probs=163.6
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc----------cC------------------------
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW----------RG------------------------ 291 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~----------~G------------------------ 291 (496)
+.+++||||+||||||||+||+++|.+++.||+.++++++.+.+ .|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 68889999999999999999999999999999999999988643 11
Q ss_pred -------ChHH--HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--ccCcEEEEEec
Q 010975 292 -------DSEK--LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDELVFVLAA 360 (496)
Q Consensus 292 -------~~e~--~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~~~~viVIat 360 (496)
..++ .++.+|+.|+.++||||||||||.++.+.. ....+.+|+..|++.. .....|+||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 1222 378899999999999999999999975411 1223678889998763 23456999999
Q ss_pred cCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCC--CCCCCC-CCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975 361 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP--SQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 435 (496)
Q Consensus 361 Tn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~--~~~~~~-~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~ 435 (496)
||+|+.|||||+| ||++.|.++.|+..+|.+++..++. ...... ..+++.+|+.|.||+|+||+++|++|+..++
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999998876543 223332 2468889999999999999999999999998
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975 436 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 473 (496)
Q Consensus 436 rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~ 473 (496)
++-. ..|+.+|++.|+..+.
T Consensus 1859 rq~k------------------s~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1859 TQKK------------------SIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HcCC------------------CccCHHHHHHHHHHHH
Confidence 8621 1267777777776554
No 38
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.6e-28 Score=256.82 Aligned_cols=261 Identities=20% Similarity=0.203 Sum_probs=207.8
Q ss_pred CCchhHHHHHhhcCCCceecCCccccccccccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhh
Q 010975 151 TSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKE 230 (496)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e 230 (496)
..|+.+++.+.++.+++. +.+||++|....||.+..........++.++ -+|++|++++|+++.|
T Consensus 361 ~eEl~kL~~le~~~sEfn----vtrNYLdwlt~LPWgk~S~En~dl~~Ak~iL-----------deDHYgm~dVKeRILE 425 (906)
T KOG2004|consen 361 DEELTKLKLLEPSSSEFN----VTRNYLDWLTSLPWGKSSTENLDLARAKEIL-----------DEDHYGMEDVKERILE 425 (906)
T ss_pred HHHHHHHhccCccccchh----HHHHHHHHHHhCCCCCCChhhhhHHHHHHhh-----------cccccchHHHHHHHHH
Confidence 456777777778777777 9999999999999999998887777777776 6799999999999999
Q ss_pred hhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc---------cccCChHHHHHHHH
Q 010975 231 AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLF 301 (496)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~---------~~~G~~e~~l~~lf 301 (496)
+++........ .++-++|+||||+|||+++++||..+|+.|++++.+.+.+ .|+|.+.+++-+.+
T Consensus 426 fiAV~kLrgs~------qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~L 499 (906)
T KOG2004|consen 426 FIAVGKLRGSV------QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCL 499 (906)
T ss_pred HHHHHhhcccC------CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHH
Confidence 99876654432 2345899999999999999999999999999999876543 39999999999999
Q ss_pred HHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc------------CccccCcEEEEEeccCCcccccH
Q 010975 302 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD------------GLTQSDELVFVLAATNLPWELDA 369 (496)
Q Consensus 302 ~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld------------~~~~~~~~viVIatTn~p~~Ld~ 369 (496)
+.+...+| +++|||||+++...++++. ++||+.+| ++...-+.|++|||+|..+.|++
T Consensus 500 K~v~t~NP-liLiDEvDKlG~g~qGDPa---------sALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~ 569 (906)
T KOG2004|consen 500 KKVKTENP-LILIDEVDKLGSGHQGDPA---------SALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP 569 (906)
T ss_pred HhhCCCCc-eEEeehhhhhCCCCCCChH---------HHHHHhcChhhccchhhhccccccchhheEEEEeccccccCCh
Confidence 99999998 9999999999854444433 33444444 33445577999999999999999
Q ss_pred HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975 370 AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443 (496)
Q Consensus 370 aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le 443 (496)
+|++|++. |.++-+..+|+..|.+.||-........--.+-++..+...-+-|+.+|++|..+++.|.+..+.
T Consensus 570 pLlDRMEv-IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004|consen 570 PLLDRMEV-IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred hhhhhhhe-eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999966 99999999999999999996655432221222333344444467888999999999887665443
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.94 E-value=1.6e-27 Score=241.72 Aligned_cols=167 Identities=21% Similarity=0.225 Sum_probs=138.5
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhh-----cCCcceehhhHHHH
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAI 320 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~-----~~p~ILfIDEID~L 320 (496)
+.+|++++||||||||||++|+++|+++|.+++.++++++.++|+|++++.++++|..|.. .+||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 6788999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred HhhhcCCcchhHHhhhh-hhhhhhhccCcc-----------ccCcEEEEEeccCCcccccHHHHH--HhhhhhcccCCCH
Q 010975 321 ISQRGEARSEHEASRRL-KTELLIQMDGLT-----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 386 (496)
Q Consensus 321 ~~~r~~~~~~~~~~~~i-~~~Ll~~ld~~~-----------~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~ 386 (496)
++.++.. .....+++ ..+|+..+|+.. .....|+||+|||+|+.||++|+| ||++.+ ..|+.
T Consensus 225 ~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~ 300 (413)
T PLN00020 225 AGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR 300 (413)
T ss_pred CCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence 9987633 23333444 478998888631 235569999999999999999999 999854 58999
Q ss_pred HHHHHHHHhhCCCCCCCCCCCcceeeecccC
Q 010975 387 EARRAMFESLLPSQTGEESLPYDLLVERTEG 417 (496)
Q Consensus 387 eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g 417 (496)
++|.+|++.+++..... ..++..+++.+.|
T Consensus 301 e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 301 EDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred HHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 99999999999876544 3344444444433
No 40
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.87 E-value=7.6e-23 Score=231.51 Aligned_cols=288 Identities=21% Similarity=0.196 Sum_probs=188.9
Q ss_pred CCchhHHHHHhhcCCCceecCCccccccccccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhh
Q 010975 151 TSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKE 230 (496)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e 230 (496)
..++.++++|++.+.++. +.++|+++....||.+..........++..+ -++++|++++|+++.+
T Consensus 270 ~~e~~~~~~~~~~~~~~~----~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l-----------~~~~~G~~~~k~~i~~ 334 (775)
T TIGR00763 270 EKELTKLSLLEPSSSEFT----VTRNYLDWLTDLPWGKYSKENLDLKRAKEIL-----------DEDHYGLKKVKERILE 334 (775)
T ss_pred HHHHHHHHcCCCCCchHH----HHHHHHHHHHCCCCcccccchhhHHHHHHHh-----------hhhcCChHHHHHHHHH
Confidence 345566666666666555 9999999999999988766543333333332 3569999999999999
Q ss_pred hhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc---------ccccCChHHHHHHHH
Q 010975 231 AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---------SKWRGDSEKLIKVLF 301 (496)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~---------~~~~G~~e~~l~~lf 301 (496)
++........ ....++||+||||||||++|+++|+.++.+++.++++.+. ..|.|...+.+.+.+
T Consensus 335 ~~~~~~~~~~------~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l 408 (775)
T TIGR00763 335 YLAVQKLRGK------MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGL 408 (775)
T ss_pred HHHHHHhhcC------CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHH
Confidence 8876543322 1224799999999999999999999999999999875442 247788788888888
Q ss_pred HHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC------------ccccCcEEEEEeccCCcccccH
Q 010975 302 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------------LTQSDELVFVLAATNLPWELDA 369 (496)
Q Consensus 302 ~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~------------~~~~~~~viVIatTn~p~~Ld~ 369 (496)
..+...+| ||||||||++.+..++.. .+.|+..+|. .....+++++|+|||.++.+++
T Consensus 409 ~~~~~~~~-villDEidk~~~~~~~~~---------~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~ 478 (775)
T TIGR00763 409 KKAKTKNP-LFLLDEIDKIGSSFRGDP---------ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPR 478 (775)
T ss_pred HHhCcCCC-EEEEechhhcCCccCCCH---------HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCH
Confidence 88876666 899999999975432211 1334444431 1122346889999999999999
Q ss_pred HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc-
Q 010975 370 AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE- 447 (496)
Q Consensus 370 aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~- 447 (496)
+|++||. ++.++.|+.+++.+|++.++...... ....-.. ...++..-...++.+++++..+.++|.+..+-....
T Consensus 479 ~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~-~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~ 556 (775)
T TIGR00763 479 PLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDE-LKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAV 556 (775)
T ss_pred HHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcce-EEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHH
Confidence 9999996 58999999999999998877322111 0110000 111111111223345556666666665543322111
Q ss_pred -CC-CCCCC---CCCCCCCchhHHHHhhc
Q 010975 448 -VA-PDDEL---PQIGPIRPEDVEIALKN 471 (496)
Q Consensus 448 -i~-~~~~~---~~~~~It~eDf~~Al~~ 471 (496)
+. ..... .-...|+.++++..+..
T Consensus 557 ~~~~~~~~~~~~~~~v~i~~~~~~~~lg~ 585 (775)
T TIGR00763 557 KLVEQGEKKKSEAESVVITPDNLKKYLGK 585 (775)
T ss_pred HHHhccCcccCCcccccCCHHHHHHhcCc
Confidence 01 01100 11245888888888763
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2.5e-22 Score=199.75 Aligned_cols=177 Identities=19% Similarity=0.237 Sum_probs=134.8
Q ss_pred cchhhcchHHHHHHhhhhcccccCcccccccc---CccceeeeeCCCCChhHHHHHHHHhhh-------cceeeeeeccc
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLL---SPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 284 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~---~~~~~vLL~GPpGtGKT~LAralA~~l-------~~~~i~v~~s~ 284 (496)
+++++|++++|++|.+++.+..........+. +...+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 67899999999999999877755433223332 234579999999999999999999875 34788899999
Q ss_pred ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
+.+.++|+....++.+|+.+.. +||||||+|.|.... +.......++.|+..|+.. ...+++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARGG-----EKDFGKEAIDTLVKGMEDN---RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhccC---CEEEEechhhhccCC-----ccchHHHHHHHHHHHHhcc---CCCEEEEecCCcc
Confidence 9999999999999999988753 799999999996321 1122345567788888743 2234444444322
Q ss_pred -----ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 365 -----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 365 -----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
..+++++++||...+.++.++.+++.+|++.++.....
T Consensus 154 ~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~ 196 (261)
T TIGR02881 154 EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREY 196 (261)
T ss_pred hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 23788999999888999999999999999999876544
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=3.3e-22 Score=201.48 Aligned_cols=215 Identities=19% Similarity=0.237 Sum_probs=155.1
Q ss_pred cchhhcchHHHHHHhhhhcccccCcccccc-cc---CccceeeeeCCCCChhHHHHHHHHhhh-------cceeeeeecc
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTG-LL---SPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 283 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~-~~---~~~~~vLL~GPpGtGKT~LAralA~~l-------~~~~i~v~~s 283 (496)
+++++|++++|++|.+++.+.. .++.... +. .++.+++|+||||||||++|+++|+.+ +.+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 4589999999999999886633 2232222 22 234469999999999999999999976 2368999999
Q ss_pred cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975 284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 363 (496)
Q Consensus 284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~ 363 (496)
++.+.|.|+++.....+++++.. +||||||+|.+...+. .......++..|+..|+.. ...++||++++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQ---RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC----ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCc
Confidence 99999999888888888887754 8999999999864322 1223466778888888743 233556666653
Q ss_pred cc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC-cceeeec------ccCCc-CCchhhcchhh
Q 010975 364 PW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVER------TEGYS-GSDIRLVSKEA 430 (496)
Q Consensus 364 p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~-l~~la~~------t~g~s-~~dI~~l~~~A 430 (496)
.. .++|++++||+.++.|++|+.+++.+|++.++.+.......+ ...+... .+.+. +++++.++..+
T Consensus 171 ~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 171 DRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 21 346999999999999999999999999999997655432221 1112221 12333 57888888888
Q ss_pred hccHHHHHHH
Q 010975 431 AMQPLRRLMV 440 (496)
Q Consensus 431 ~~~a~rR~~~ 440 (496)
..+...|+..
T Consensus 251 ~~~~~~r~~~ 260 (287)
T CHL00181 251 RMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHc
Confidence 8887777665
No 43
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.85 E-value=4.8e-22 Score=223.74 Aligned_cols=289 Identities=19% Similarity=0.188 Sum_probs=194.2
Q ss_pred CCchhHHHHHhhcCCCceecCCccccccccccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhh
Q 010975 151 TSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKE 230 (496)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e 230 (496)
..++.++++|++.++++. +.++|++|.+..||.+...+......++.++ -++++|++++|+++.+
T Consensus 272 ~~e~~~~~~~~~~~~e~~----~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l-----------~~~~~g~~~vK~~i~~ 336 (784)
T PRK10787 272 EAELQKLKMMSPMSAEAT----VVRGYIDWMVQVPWNARSKVKKDLRQAQEIL-----------DTDHYGLERVKDRILE 336 (784)
T ss_pred HHHHHHHHhCCCCCchHH----HHHHHHHHHHhCCCCCCCcccccHHHHHHHh-----------hhhccCHHHHHHHHHH
Confidence 355666666666666666 9999999999999999988777777676665 5679999999999999
Q ss_pred hhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc---------cccCChHHHHHHHH
Q 010975 231 AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLF 301 (496)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~---------~~~G~~e~~l~~lf 301 (496)
++........ .....++|+||||+|||++++.+|..++.+++.++.+...+ .|.|...+.+.+.+
T Consensus 337 ~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l 410 (784)
T PRK10787 337 YLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKM 410 (784)
T ss_pred HHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHH
Confidence 9876543221 12246999999999999999999999999999998765432 36777777777777
Q ss_pred HHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC------------ccccCcEEEEEeccCCcccccH
Q 010975 302 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------------LTQSDELVFVLAATNLPWELDA 369 (496)
Q Consensus 302 ~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~------------~~~~~~~viVIatTn~p~~Ld~ 369 (496)
..+...+| ||+|||+|++..+.++. ..+.|+..+|. +....+.+++|+|+|.. .+++
T Consensus 411 ~~~~~~~~-villDEidk~~~~~~g~---------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~ 479 (784)
T PRK10787 411 AKVGVKNP-LFLLDEIDKMSSDMRGD---------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPA 479 (784)
T ss_pred HhcCCCCC-EEEEEChhhcccccCCC---------HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCH
Confidence 77665565 89999999997653321 12445555542 12234678999999987 5999
Q ss_pred HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc--
Q 010975 370 AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE-- 447 (496)
Q Consensus 370 aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~-- 447 (496)
+|++||. ++.+..++.++..+|++.++..+..........-...++.....-++.+.+++..+.++|.+..+-....
T Consensus 480 aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~ 558 (784)
T PRK10787 480 PLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQ 558 (784)
T ss_pred HHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHH
Confidence 9999996 5999999999999999999853221100000000111111111111233445666666665554322111
Q ss_pred CCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975 448 VAPDDELPQIGPIRPEDVEIALKNTR 473 (496)
Q Consensus 448 i~~~~~~~~~~~It~eDf~~Al~~~~ 473 (496)
+..... .....|+.+++.+.|..-+
T Consensus 559 ~~~~~~-~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 559 LLLDKS-LKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred HHhcCC-CceeeecHHHHHHHhCCCc
Confidence 000111 1224589999999887543
No 44
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.7e-21 Score=194.57 Aligned_cols=248 Identities=24% Similarity=0.343 Sum_probs=176.5
Q ss_pred CccccccccccCCCCCCCCCc------HHHHHHHHHHh--hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccc
Q 010975 172 GVLANVINERLQKPLLPNFDS------AETRALAESLC--RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT 243 (496)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~ 243 (496)
.|.+.|++.++.+|.+-.-.+ .........-. .......++..|++||-....+++|..+...-. +.+.
T Consensus 303 ~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTa-NTK~-- 379 (630)
T KOG0742|consen 303 LVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATA-NTKK-- 379 (630)
T ss_pred hhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhc-cccc--
Confidence 367777777777774322111 11111111111 112223455568999988888888887553322 1111
Q ss_pred cccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCc-ceehhhHHHHHh
Q 010975 244 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPS-TIFLDEIDAIIS 322 (496)
Q Consensus 244 ~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~-ILfIDEID~L~~ 322 (496)
...+-++||+|||||||||++|+.||...|..+..++++++..-.. +.-..++.+|+.++..+.+ +|||||+|.+..
T Consensus 380 -h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~-qaVTkiH~lFDWakkS~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 380 -HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGA-QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLC 457 (630)
T ss_pred -ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccch-HHHHHHHHHHHHHhhcccceEEEehhhHHHHH
Confidence 1235579999999999999999999999999999999888754322 3456789999999876544 889999999998
Q ss_pred hhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 323 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 323 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
.|... ..++..+..+++||..-. .....++++.+||+|.++|.++-+|++..++||+|..+||..++..|+.++..
T Consensus 458 eRnkt-ymSEaqRsaLNAlLfRTG---dqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 458 ERNKT-YMSEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred Hhchh-hhcHHHHHHHHHHHHHhc---ccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 86543 445666778888887665 23445667779999999999999999999999999999999999998866543
Q ss_pred CCCC---------------------------CcceeeecccCCcCCchhhcch
Q 010975 403 EESL---------------------------PYDLLVERTEGYSGSDIRLVSK 428 (496)
Q Consensus 403 ~~~~---------------------------~l~~la~~t~g~s~~dI~~l~~ 428 (496)
..+. .+.+.|+.|+||||++|..|+.
T Consensus 534 ~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva 586 (630)
T KOG0742|consen 534 KPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVA 586 (630)
T ss_pred CcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 2110 1234678899999999988775
No 45
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.84 E-value=1.8e-21 Score=196.02 Aligned_cols=235 Identities=19% Similarity=0.226 Sum_probs=159.3
Q ss_pred hhhcchHHHHHHhhhhcccccCcccccc-cc---CccceeeeeCCCCChhHHHHHHHHhhhc-------ceeeeeecccc
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTG-LL---SPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNISASSV 285 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~-~~---~~~~~vLL~GPpGtGKT~LAralA~~l~-------~~~i~v~~s~l 285 (496)
+++|++++|++|.+++.+. ..++.... ++ .+..+++|+||||||||++|+++|+.+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~-~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALL-LVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHHH-HHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 6999999999999988763 33333322 22 2445899999999999999999998772 37999999999
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP- 364 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p- 364 (496)
.+.+.|+++..++.+|+++.. +||||||+|.+...+.. ......+++.|+..|+.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQ---RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHH
Confidence 999999988888888888754 89999999998643221 223355667788888732 2345566666543
Q ss_pred -c---cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC-cceeeecc------cC-CcCCchhhcchhhhc
Q 010975 365 -W---ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT------EG-YSGSDIRLVSKEAAM 432 (496)
Q Consensus 365 -~---~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~-l~~la~~t------~g-~s~~dI~~l~~~A~~ 432 (496)
+ .+++++.+||...+.||.++.+++..|++.++.+.....+.+ ...+.... +. -..+++++++..+..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 258999999999999999999999999999998754332211 11122210 11 124566666666666
Q ss_pred cHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHH
Q 010975 433 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 468 (496)
Q Consensus 433 ~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~A 468 (496)
+...|+..... ...+. .+...||.+|+..+
T Consensus 252 ~~~~r~~~~~~---~~~~~---~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLD---RVLDK---SDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcC---CCCCH---HHHhCCCHHHHhhc
Confidence 65555543211 11111 12245777887554
No 46
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.84 E-value=2.7e-21 Score=170.40 Aligned_cols=130 Identities=41% Similarity=0.662 Sum_probs=115.7
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcC-CcceehhhHHHHHhhhcCCcch
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSE 330 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~-p~ILfIDEID~L~~~r~~~~~~ 330 (496)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.+.....+..+|.++.... |+||+|||+|.+.+.. ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--QPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--STSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--cccc
Confidence 689999999999999999999999999999999998899999999999999998887 9999999999998886 2234
Q ss_pred hHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHH-HHhhhhhcccC
Q 010975 331 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAML-RRLEKRILVPL 383 (496)
Q Consensus 331 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~-rRf~~~I~~~~ 383 (496)
......+...|+..++........++||+|||.++.++++++ +||+..+++++
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 455677888999999988777677999999999999999999 99999888763
No 47
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.6e-21 Score=204.15 Aligned_cols=241 Identities=22% Similarity=0.268 Sum_probs=194.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~ 329 (496)
..+||+|+||||||++++++|+++|.+++.++|.++.+...+..+.++..+|.+|+...|+|||+-++|.+..++.+ +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999855433 12
Q ss_pred hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcc
Q 010975 330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYD 409 (496)
Q Consensus 330 ~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~ 409 (496)
+..... ....++. .|....+...++||++|+..+.+++.+++-|-.+|.++.|+.++|.+|++.++.......++...
T Consensus 511 d~rl~~-~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLK-VIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHH-HHHHHHh-cccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 111111 2222222 44445566779999999999999999999999999999999999999999999999988888899
Q ss_pred eeeecccCCcCCchhhcchhhhccHHHHHHHHhh--ccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchh----hhh
Q 010975 410 LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE--GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA----HRY 483 (496)
Q Consensus 410 ~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le--~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~----~~~ 483 (496)
.++.++.||+.+++..++......+..|..+..- .-++........+...++++||.+|+.+.|...+..+ ..-
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPn 668 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPN 668 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCc
Confidence 9999999999999999999885555555544321 1112223333444567999999999999988877653 567
Q ss_pred hhhccccccc
Q 010975 484 EKFNADYGSE 493 (496)
Q Consensus 484 ~~~~~~~g~~ 493 (496)
..|.+..|.+
T Consensus 669 V~WdDVGGLe 678 (953)
T KOG0736|consen 669 VSWDDVGGLE 678 (953)
T ss_pred cchhcccCHH
Confidence 8888888865
No 48
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2e-20 Score=193.06 Aligned_cols=225 Identities=23% Similarity=0.337 Sum_probs=172.8
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCcc-ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccC
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 291 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~-~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G 291 (496)
.+|+.++=..+.|++|.+-+....+.++++.+...++ +|.|||||||||||+++.|+|+.++..++.+..+++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc---
Confidence 6688889899999999999999999999999887776 689999999999999999999999999999998877432
Q ss_pred ChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc----hh-HHhhhhhhhhhhhccCccccC-cEEEEEeccCCcc
Q 010975 292 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS----EH-EASRRLKTELLIQMDGLTQSD-ELVFVLAATNLPW 365 (496)
Q Consensus 292 ~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~----~~-~~~~~i~~~Ll~~ld~~~~~~-~~viVIatTn~p~ 365 (496)
.-++.++...... +||+|+|||.-..-+..... .. ..++..++.||+.+||+...- .-.+||.|||..+
T Consensus 275 ---~dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 275 ---SDLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred ---HHHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2277777655543 79999999987543221111 11 134567889999999996654 3456788999999
Q ss_pred cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccC--CcCCchhh-cch-h-hhccHHHHH
Q 010975 366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG--YSGSDIRL-VSK-E-AAMQPLRRL 438 (496)
Q Consensus 366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g--~s~~dI~~-l~~-~-A~~~a~rR~ 438 (496)
.|||||+| |++.+|+++..+.+.-+.++..++.-.. .+.-++++.+..++ .||+++.. +.. . .+..+++++
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~L 427 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGL 427 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHH
Confidence 99999999 9999999999999999999999997643 12223334334333 58888875 332 2 577778888
Q ss_pred HHHhhcccc
Q 010975 439 MVLLEGRQE 447 (496)
Q Consensus 439 ~~~le~~~~ 447 (496)
.+.++....
T Consensus 428 v~~l~~~~~ 436 (457)
T KOG0743|consen 428 VEALESKKE 436 (457)
T ss_pred HHHHHhhhh
Confidence 877765543
No 49
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.7e-20 Score=183.91 Aligned_cols=185 Identities=31% Similarity=0.446 Sum_probs=151.2
Q ss_pred cchhhcchHHHHHHhhhhcccccCcccc--ccccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecc
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS 283 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~--~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s 283 (496)
|+.++--..+|++|..+....++..+.. ..++.-.+-+||+||||||||+|++++|+.+ ...++++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 8899999999999999886655444322 2224444569999999999999999999988 3457899999
Q ss_pred cccccccCChHHHHHHHHHHhhhc-----CCcceehhhHHHHHhhhcC--CcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975 284 SVVSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVF 356 (496)
Q Consensus 284 ~l~~~~~G~~e~~l~~lf~~a~~~-----~p~ILfIDEID~L~~~r~~--~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 356 (496)
.++++|.+++.+.+..+|++.... .-..++|||+++++..|.. ...+....-++++++|.++|.+... .+|+
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-~Nvl 299 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-PNVL 299 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-CCEE
Confidence 999999999999999999887642 1235678999999988743 2334445568889999999988654 4588
Q ss_pred EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975 357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
+++|+|-.+.+|.|+.+|-+...++++|+.+.+.+|++.++.+.
T Consensus 300 iL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEEL 343 (423)
T ss_pred EEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887543
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.80 E-value=2.8e-19 Score=181.90 Aligned_cols=232 Identities=22% Similarity=0.270 Sum_probs=160.2
Q ss_pred CCCCCccchhhcchHHHH---HHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 209 GSPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~---~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
..++.+++|++|+++..- -|.+.+.. ....+++|||||||||||+|+.||+.++.+|..+++..-
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~ 84 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS 84 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc
Confidence 345778999999998763 23333322 122689999999999999999999999999999987542
Q ss_pred cccccCChHHHHHHHHHHhhhcC----CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975 286 VSKWRGDSEKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 361 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~----p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT 361 (496)
.-+.++.+++.++... ..||||||||++... .++.||-.++ .+..++|.+||
T Consensus 85 -------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-------------QQD~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 85 -------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-------------QQDALLPHVE----NGTIILIGATT 140 (436)
T ss_pred -------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-------------hhhhhhhhhc----CCeEEEEeccC
Confidence 4567888898885432 369999999998433 3355777665 45556666777
Q ss_pred CCc-ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHH
Q 010975 362 NLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 440 (496)
Q Consensus 362 n~p-~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~ 440 (496)
.+| ..++++|++|+.. +.+.+.+.++...++++.+.......... .. ....+...++...+.+..|+.++
T Consensus 141 ENPsF~ln~ALlSR~~v-f~lk~L~~~di~~~l~ra~~~~~rgl~~~---~~-----~i~~~a~~~l~~~s~GD~R~aLN 211 (436)
T COG2256 141 ENPSFELNPALLSRARV-FELKPLSSEDIKKLLKRALLDEERGLGGQ---II-----VLDEEALDYLVRLSNGDARRALN 211 (436)
T ss_pred CCCCeeecHHHhhhhhe-eeeecCCHHHHHHHHHHHHhhhhcCCCcc---cc-----cCCHHHHHHHHHhcCchHHHHHH
Confidence 666 6899999999954 88899999999999888443222111100 00 01134555556666777888888
Q ss_pred HhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchhhhhhhhcccc
Q 010975 441 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADY 490 (496)
Q Consensus 441 ~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~~~~~~~~~~~ 490 (496)
.+|-.......+. .++.+++++.+.+..+....+-..+.+....|
T Consensus 212 ~LE~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~ 256 (436)
T COG2256 212 LLELAALSAEPDE-----VLILELLEEILQRRSARFDKDGDAHYDLISAL 256 (436)
T ss_pred HHHHHHHhcCCCc-----ccCHHHHHHHHhhhhhccCCCcchHHHHHHHH
Confidence 8876655443333 35689999999988887666554444444443
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=3.8e-19 Score=200.46 Aligned_cols=200 Identities=23% Similarity=0.335 Sum_probs=149.1
Q ss_pred HHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----
Q 010975 199 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----- 273 (496)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----- 273 (496)
.++...++.+...+.++++++|+++..+++.+.+.... .++++|+||||||||++|+++|+.+
T Consensus 165 l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~------------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~ 232 (731)
T TIGR02639 165 LEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRK------------KNNPLLVGEPGVGKTAIAEGLALRIAEGKV 232 (731)
T ss_pred HHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCC------------CCceEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 34455667777778889999999999999888775432 2689999999999999999999987
Q ss_pred -----cceeeeeeccccc--ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975 274 -----KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 346 (496)
Q Consensus 274 -----~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 346 (496)
+.+++.++++.+. .+|.|+.+..++.+++.+....++||||||+|.+.+......+..+..+ .|...+.
T Consensus 233 p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~----~L~~~l~ 308 (731)
T TIGR02639 233 PENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN----LLKPALS 308 (731)
T ss_pred chhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH----HHHHHHh
Confidence 7889999998887 4789999999999999998777899999999999876432222222222 2322232
Q ss_pred CccccCcEEEEEeccCCc-----ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC-----cceeeeccc
Q 010975 347 GLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-----YDLLVERTE 416 (496)
Q Consensus 347 ~~~~~~~~viVIatTn~p-----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~-----l~~la~~t~ 416 (496)
++ .+.+|++||.. ...|+++.|||+. +.++.|+.+++.+|++.....+...+++. +..++..+.
T Consensus 309 ----~g-~i~~IgaTt~~e~~~~~~~d~al~rRf~~-i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ 382 (731)
T TIGR02639 309 ----SG-KLRCIGSTTYEEYKNHFEKDRALSRRFQK-IDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSA 382 (731)
T ss_pred ----CC-CeEEEEecCHHHHHHHhhhhHHHHHhCce-EEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhh
Confidence 33 46677777753 3589999999974 99999999999999998776543333322 333455555
Q ss_pred CCcC
Q 010975 417 GYSG 420 (496)
Q Consensus 417 g~s~ 420 (496)
.|.+
T Consensus 383 ryi~ 386 (731)
T TIGR02639 383 RYIN 386 (731)
T ss_pred cccc
Confidence 5543
No 52
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.8e-20 Score=194.47 Aligned_cols=252 Identities=21% Similarity=0.246 Sum_probs=192.7
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecccccccccC
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRG 291 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~~~~G 291 (496)
.|++-...+|+...+....| +..+.++||+||+|+|||.|++++++++ -.++..++|+.+.+....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 35555666666655544333 2334689999999999999999999988 466789999999887777
Q ss_pred ChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHH
Q 010975 292 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 370 (496)
Q Consensus 292 ~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~a 370 (496)
...+.+..+|..+.+++|+||++|++|.+++......+ ......++...+.+.+..+..++..+.||++.+....+++.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 78888999999999999999999999999984332222 23334444444445555556677778999999999999998
Q ss_pred HHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975 371 MLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 371 L~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
|.+ +|+.++.++.|+..+|.+|++..+.+.... ...+++-++..|+||...|+..++.+|...+..+.+.
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris------- 630 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS------- 630 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc-------
Confidence 887 899999999999999999999999876632 3345566999999999999999999999888744332
Q ss_pred CCCCCCCCCCCCCCchhHHHHhhcCCCCccchhhh----hhhhccccc
Q 010975 448 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHR----YEKFNADYG 491 (496)
Q Consensus 448 i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~~~----~~~~~~~~g 491 (496)
... .-+|.++|.++|+.+.|.+.+.++. --.|.+..|
T Consensus 631 --~~~-----klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg 671 (952)
T KOG0735|consen 631 --NGP-----KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGG 671 (952)
T ss_pred --cCc-----ccchHHHHHHHHHhcChHHhhhccccccCCCCceeccc
Confidence 111 1389999999999999998875422 235555554
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.78 E-value=5.3e-20 Score=176.22 Aligned_cols=183 Identities=19% Similarity=0.207 Sum_probs=115.7
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
....++.+|+|++|+++++..+.-++....... .+..|+|||||||+||||||+.||++++.++..+++..+.
T Consensus 15 ~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 15 AERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 344567789999999999999887765543322 1235899999999999999999999999999988875442
Q ss_pred ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------c-------c
Q 010975 287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q-------S 351 (496)
Q Consensus 287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~-------~ 351 (496)
. ...+..++.... ...||||||||++... +++.|+..|++.. . .
T Consensus 88 k------~~dl~~il~~l~--~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 88 K------AGDLAAILTNLK--EGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred h------HHHHHHHHHhcC--CCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccccceeecc
Confidence 1 233444444433 2469999999998644 3344555554321 1 1
Q ss_pred CcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccC
Q 010975 352 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 417 (496)
Q Consensus 352 ~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g 417 (496)
..+.-+|++|++...++++|++||..+..+..++.++...|++.........-+ ....++|+++.|
T Consensus 147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG 213 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG 213 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT
T ss_pred CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC
Confidence 134667888888899999999999988899999999999999987765554422 223446666665
No 54
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.76 E-value=2.3e-18 Score=192.88 Aligned_cols=213 Identities=23% Similarity=0.287 Sum_probs=157.6
Q ss_pred HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----
Q 010975 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 273 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---- 273 (496)
..++..+++.+.....+++.++|.++..+++.+++.... .+++||+||||||||++|+++|...
T Consensus 168 ~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~------------~~n~LLvGppGvGKT~lae~la~~i~~~~ 235 (758)
T PRK11034 168 RMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRR------------KNNPLLVGESGVGKTAIAEGLAWRIVQGD 235 (758)
T ss_pred HHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccC------------CCCeEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 455666778777788889999999999999999876531 2678999999999999999999875
Q ss_pred ------cceeeeeeccccc--ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975 274 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 345 (496)
Q Consensus 274 ------~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l 345 (496)
+..++.++.+.+. .+|.|+.+.+++.++..+....++||||||||.+.+.........+..+. |...+
T Consensus 236 vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nl----Lkp~L 311 (758)
T PRK11034 236 VPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANL----IKPLL 311 (758)
T ss_pred CCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHH----HHHHH
Confidence 5667777766665 36789999999999999888788999999999998765432222222221 21122
Q ss_pred cCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceee-----ecc
Q 010975 346 DGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLV-----ERT 415 (496)
Q Consensus 346 d~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la-----~~t 415 (496)
.++ .+.+|++|+.++ ..|++|.|||+ .|.++.|+.+++..|++.+...+...+++.+.+.| ..+
T Consensus 312 ----~~g-~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls 385 (758)
T PRK11034 312 ----SSG-KIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELA 385 (758)
T ss_pred ----hCC-CeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHh
Confidence 233 467888888764 57999999997 49999999999999999988877777777665432 222
Q ss_pred cC-----CcCCchhhcchhhhc
Q 010975 416 EG-----YSGSDIRLVSKEAAM 432 (496)
Q Consensus 416 ~g-----~s~~dI~~l~~~A~~ 432 (496)
.. +.|+..-.++.+|+.
T Consensus 386 ~ryi~~r~lPdKaidlldea~a 407 (758)
T PRK11034 386 VKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred hccccCccChHHHHHHHHHHHH
Confidence 33 334445556666653
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=4.3e-18 Score=166.30 Aligned_cols=182 Identities=19% Similarity=0.185 Sum_probs=136.1
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 288 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~ 288 (496)
.-++..|+|.+|++++|+.|.-++...+.+.+. .-|+||+||||.||||||+.+|+++|..+-..++..+.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~-------lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-- 89 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEA-------LDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-- 89 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcCCC-------cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--
Confidence 345677999999999999999998777665543 35899999999999999999999999998888776652
Q ss_pred ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc---------------cCc
Q 010975 289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---------------SDE 353 (496)
Q Consensus 289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---------------~~~ 353 (496)
-...+..++..... ..||||||||.+.+. +.+-|+..|+++.- .-.
T Consensus 90 ----K~gDlaaiLt~Le~--~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 90 ----KPGDLAAILTNLEE--GDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ----ChhhHHHHHhcCCc--CCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 23444555554443 369999999998644 22334444543211 123
Q ss_pred EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC-CcceeeecccCC
Q 010975 354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY 418 (496)
Q Consensus 354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~-~l~~la~~t~g~ 418 (496)
+.-+|++|.+...+..+|++||.....+..++.++..+|+.+........-+. ...++|+++.|.
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence 45678888889999999999999999999999999999999887665554322 245577777764
No 56
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.73 E-value=1.3e-17 Score=189.82 Aligned_cols=199 Identities=21% Similarity=0.329 Sum_probs=146.4
Q ss_pred HHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----
Q 010975 199 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----- 273 (496)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----- 273 (496)
.++..+++.....+.++++++|+++..+++.+.+.... .++++|+||||||||++|+.+|+.+
T Consensus 170 l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~------------~~n~lLvG~pGvGKTal~~~La~~i~~~~v 237 (852)
T TIGR03345 170 LDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRR------------QNNPILTGEAGVGKTAVVEGLALRIAAGDV 237 (852)
T ss_pred HHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCC------------cCceeEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 44556777777788899999999999999888775432 2689999999999999999999986
Q ss_pred -----cceeeeeecccccc--cccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975 274 -----KTTFFNISASSVVS--KWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 345 (496)
Q Consensus 274 -----~~~~i~v~~s~l~~--~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l 345 (496)
+.+++.++.+.+.+ .+.|+++..++.+++.+.. ..+.||||||+|.+.+.+.... ..+..+ .|...+
T Consensus 238 ~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d~~n----~Lkp~l 312 (852)
T TIGR03345 238 PPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGDAAN----LLKPAL 312 (852)
T ss_pred CccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-cccHHH----HhhHHh
Confidence 35678888887763 6889999999999998864 3568999999999987643211 111211 122222
Q ss_pred cCccccCcEEEEEeccCCc-----ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC-----cceeeecc
Q 010975 346 DGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-----YDLLVERT 415 (496)
Q Consensus 346 d~~~~~~~~viVIatTn~p-----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~-----l~~la~~t 415 (496)
.++. +.+|++|+.. ..+|++|.|||. .|.++.|+.+++..|++.+...+...+++. +..++..+
T Consensus 313 ----~~G~-l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 313 ----ARGE-LRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELS 386 (852)
T ss_pred ----hCCC-eEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHc
Confidence 2444 5566666653 358999999996 599999999999999887776554443333 34456666
Q ss_pred cCCcC
Q 010975 416 EGYSG 420 (496)
Q Consensus 416 ~g~s~ 420 (496)
.+|.+
T Consensus 387 ~ryi~ 391 (852)
T TIGR03345 387 HRYIP 391 (852)
T ss_pred ccccc
Confidence 66654
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.72 E-value=2e-17 Score=188.70 Aligned_cols=187 Identities=21% Similarity=0.332 Sum_probs=144.1
Q ss_pred HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----
Q 010975 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 273 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---- 273 (496)
..++..+++.+...+.++++++|.++..+++.+++.... .++++|+||||||||++|+++|..+
T Consensus 160 ~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~------------~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 227 (857)
T PRK10865 160 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIINGE 227 (857)
T ss_pred HHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCC------------cCceEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 445566777788888899999999999999999886532 2589999999999999999999988
Q ss_pred ------cceeeeeeccccc--ccccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhh
Q 010975 274 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 344 (496)
Q Consensus 274 ------~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ 344 (496)
+.+++.++.+.+. .+|.|+.+..++.+++.+.. ..++||||||+|.+.+..... +..+..+.+.. .
T Consensus 228 vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~~d~~~~lkp----~ 302 (857)
T PRK10865 228 VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDAGNMLKP----A 302 (857)
T ss_pred CchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cchhHHHHhcc----h
Confidence 7889999888876 46889999999999988654 467899999999998764322 22333333222 2
Q ss_pred ccCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC
Q 010975 345 MDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP 407 (496)
Q Consensus 345 ld~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~ 407 (496)
+ .++. +.+|++|+..+ .+|+++.|||+. |.++.|+.+++..|++.+...+...+++.
T Consensus 303 l----~~g~-l~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~eP~~~~~~~iL~~l~~~~e~~~~v~ 364 (857)
T PRK10865 303 L----ARGE-LHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAILRGLKERYELHHHVQ 364 (857)
T ss_pred h----hcCC-CeEEEcCCCHHHHHHhhhcHHHHhhCCE-EEeCCCCHHHHHHHHHHHhhhhccCCCCC
Confidence 2 2444 56677776654 489999999975 88999999999999998877665555443
No 58
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.72 E-value=1.5e-17 Score=168.65 Aligned_cols=187 Identities=17% Similarity=0.163 Sum_probs=125.7
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCCh
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 293 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~ 293 (496)
+|++++|++++++.|..++......+ ..+.+++|+||||||||++|+++|++++.++..+.+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ-------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 58999999999999998885433221 23467999999999999999999999988876665443211
Q ss_pred HHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc---------------ccCcEEEEE
Q 010975 294 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELVFVL 358 (496)
Q Consensus 294 e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~viVI 358 (496)
...+...+... ..+.+|||||+|.+..... +.|+..+++.. .....+.+|
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~-------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE-------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH-------------HHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 12222333322 2357999999999864321 11222222110 111236688
Q ss_pred eccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCC-CCCcceeeecccCCcCCchhhcchh
Q 010975 359 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKE 429 (496)
Q Consensus 359 atTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~-~~~l~~la~~t~g~s~~dI~~l~~~ 429 (496)
++||.+..+++++++||...+.++.|+.++..++++..+....... +..++.+++.+.|+. +.+..++..
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~ 204 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRR 204 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHH
Confidence 8889999999999999988889999999999999998876543332 222455677666644 344444443
No 59
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=2.4e-17 Score=169.28 Aligned_cols=221 Identities=18% Similarity=0.135 Sum_probs=144.9
Q ss_pred hCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
.+..+.+|++++|+++.++.+...+...... ..++.+++|+||||||||++|+++|++++..+..++...+.
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~- 88 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE- 88 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-
Confidence 3455678999999999999999887543221 12456899999999999999999999999888776654331
Q ss_pred cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc----------c-----ccC
Q 010975 288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----------T-----QSD 352 (496)
Q Consensus 288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~----------~-----~~~ 352 (496)
....+..++.... .++||||||||.+..... +.+...+++. . ...
T Consensus 89 -----~~~~l~~~l~~l~--~~~vl~IDEi~~l~~~~~-------------e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 89 -----KPGDLAAILTNLE--EGDVLFIDEIHRLSPVVE-------------EILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred -----ChHHHHHHHHhcc--cCCEEEEecHhhcchHHH-------------HHHHHHHHhcceeeeeccCccccceeecC
Confidence 1233444444332 357999999999854311 1111222111 0 011
Q ss_pred cEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccCCcCCchhhcchhhh
Q 010975 353 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 431 (496)
Q Consensus 353 ~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~A~ 431 (496)
..+.+|++|+.+..+++++++||...+.++.|+.+++.+|++..+.......+ ..++.+++.+.|.. +.+..+++.+.
T Consensus 149 ~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~ 227 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVR 227 (328)
T ss_pred CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence 23667888999999999999999888999999999999999988776544322 22455666666643 33333433322
Q ss_pred ccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975 432 MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 475 (496)
Q Consensus 432 ~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps 475 (496)
..+..+ ....|+.+++..++..+...
T Consensus 228 ~~a~~~------------------~~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 228 DFAQVK------------------GDGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHHHc------------------CCCCCCHHHHHHHHHHhCCC
Confidence 111110 01237888888888776544
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=9.3e-17 Score=170.18 Aligned_cols=209 Identities=15% Similarity=0.192 Sum_probs=141.7
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|+|++|++++++.|...+.... .++.+||+||||||||++|+.+|+.++..
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~r-----------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSGK-----------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 5667889999999999999999998875422 22458999999999999999999998653
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
++.+++..- ..-..++.+.+.+. .....|++|||+|.|.. ..
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-------------~A 137 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-------------QS 137 (484)
T ss_pred CCcHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-------------HH
Confidence 223322110 11233454444433 23346999999999842 24
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG 417 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g 417 (496)
.++|+..++ .....+++|.+|+.++.+.+++++||.. +.|..++.++....++..+......
T Consensus 138 ~NALLKtLE---EPp~~viFILaTte~~kI~~TI~SRCq~-~~f~~ls~~~i~~~L~~i~~~Egi~-------------- 199 (484)
T PRK14956 138 FNALLKTLE---EPPAHIVFILATTEFHKIPETILSRCQD-FIFKKVPLSVLQDYSEKLCKIENVQ-------------- 199 (484)
T ss_pred HHHHHHHhh---cCCCceEEEeecCChhhccHHHHhhhhe-eeecCCCHHHHHHHHHHHHHHcCCC--------------
Confidence 577888886 3445677778888899999999999965 8999999888888888877654322
Q ss_pred CcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975 418 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 470 (496)
Q Consensus 418 ~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~ 470 (496)
+.... -.++.+++.+.+|++++.++...... . ..||.+++.+.+.
T Consensus 200 ~e~eA-L~~Ia~~S~Gd~RdAL~lLeq~i~~~--~-----~~it~~~V~~~lg 244 (484)
T PRK14956 200 YDQEG-LFWIAKKGDGSVRDMLSFMEQAIVFT--D-----SKLTGVKIRKMIG 244 (484)
T ss_pred CCHHH-HHHHHHHcCChHHHHHHHHHHHHHhC--C-----CCcCHHHHHHHhC
Confidence 12222 23344555566777777766433211 0 1267777766663
No 61
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.69 E-value=9e-17 Score=183.85 Aligned_cols=199 Identities=20% Similarity=0.326 Sum_probs=147.3
Q ss_pred HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----
Q 010975 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 273 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---- 273 (496)
..++..+++.....+.++++++|.++..+++.+++.... .++++|+||||||||++++++|..+
T Consensus 155 ~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~------------~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 222 (852)
T TIGR03346 155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIVNGD 222 (852)
T ss_pred HHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCC------------CCceEEEcCCCCCHHHHHHHHHHHHhccC
Confidence 344556777777788889999999999999998875532 2679999999999999999999986
Q ss_pred ------cceeeeeeccccc--ccccCChHHHHHHHHHHhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhh
Q 010975 274 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 344 (496)
Q Consensus 274 ------~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ 344 (496)
+.+++.++.+.+. .+|.|+.+..++.+++.+... .+.||||||+|.+.+..... +..+.. +.|...
T Consensus 223 ~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-~~~d~~----~~Lk~~ 297 (852)
T TIGR03346 223 VPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-GAMDAG----NMLKPA 297 (852)
T ss_pred CchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-chhHHH----HHhchh
Confidence 6788888888775 468899999999999988653 57899999999998643221 112222 222222
Q ss_pred ccCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCc-----ceeeec
Q 010975 345 MDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY-----DLLVER 414 (496)
Q Consensus 345 ld~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l-----~~la~~ 414 (496)
+ .++. +.+|++|+..+ .+|+++.|||.. +.++.|+.+++..|++.+...+...+++.+ ...+..
T Consensus 298 l----~~g~-i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~l 371 (852)
T TIGR03346 298 L----ARGE-LHCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATL 371 (852)
T ss_pred h----hcCc-eEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHh
Confidence 2 2344 56666666552 479999999976 899999999999999998777666655433 234444
Q ss_pred ccCCc
Q 010975 415 TEGYS 419 (496)
Q Consensus 415 t~g~s 419 (496)
+.+|.
T Consensus 372 s~~yi 376 (852)
T TIGR03346 372 SHRYI 376 (852)
T ss_pred ccccc
Confidence 55544
No 62
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.69 E-value=6.6e-17 Score=175.91 Aligned_cols=224 Identities=21% Similarity=0.260 Sum_probs=139.5
Q ss_pred HhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh--------
Q 010975 202 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 273 (496)
Q Consensus 202 ~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-------- 273 (496)
+...+.+++++.+|++++|++..++.+...+..+ .+.++||+||||||||++|+++++.+
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~ 118 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGP------------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF 118 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence 4556778889999999999999999998654221 23689999999999999999998743
Q ss_pred --cceeeeeeccccc-------ccccCChHH----------------HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc
Q 010975 274 --KTTFFNISASSVV-------SKWRGDSEK----------------LIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 328 (496)
Q Consensus 274 --~~~~i~v~~s~l~-------~~~~G~~e~----------------~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~ 328 (496)
+.+|+.++|.... ....|.... .....+..+ ..++|||||||.|....+
T Consensus 119 ~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~q--- 192 (531)
T TIGR02902 119 KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQM--- 192 (531)
T ss_pred CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHHH---
Confidence 3678999986421 111110000 000122222 237999999999865422
Q ss_pred chhHHhhhhhhhhhhhccCc--------------------------cccCcEEEEEeccCCcccccHHHHHHhhhhhccc
Q 010975 329 SEHEASRRLKTELLIQMDGL--------------------------TQSDELVFVLAATNLPWELDAAMLRRLEKRILVP 382 (496)
Q Consensus 329 ~~~~~~~~i~~~Ll~~ld~~--------------------------~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~ 382 (496)
+.|+..++.- ....+..+|++||+.|+.+++++++|+.. +.++
T Consensus 193 ----------~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~-I~f~ 261 (531)
T TIGR02902 193 ----------NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVE-IFFR 261 (531)
T ss_pred ----------HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhe-eeCC
Confidence 2233322210 01123355667788899999999999965 8899
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCC
Q 010975 383 LPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR 461 (496)
Q Consensus 383 ~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It 461 (496)
.++.+++.+|++..+++.....+ ..++.++..+. +++++.++++.|+..+.. +. ...||
T Consensus 262 pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~---------------~~---~~~It 321 (531)
T TIGR02902 262 PLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALG---------------EG---RKRIL 321 (531)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhh---------------CC---CcEEc
Confidence 99999999999998876543211 11222222211 233444444433322211 10 13499
Q ss_pred chhHHHHhhcCCC
Q 010975 462 PEDVEIALKNTRP 474 (496)
Q Consensus 462 ~eDf~~Al~~~~P 474 (496)
.+|++.++..-+-
T Consensus 322 ~~dI~~vl~~~~~ 334 (531)
T TIGR02902 322 AEDIEWVAENGNY 334 (531)
T ss_pred HHHHHHHhCCccc
Confidence 9999999985443
No 63
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.68 E-value=4.7e-17 Score=185.57 Aligned_cols=200 Identities=20% Similarity=0.308 Sum_probs=146.7
Q ss_pred HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----
Q 010975 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 273 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---- 273 (496)
..++..+++.....+.++++++|.++.++++.+++... ..++++|+||||||||++|+.+|..+
T Consensus 161 ~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~ 228 (821)
T CHL00095 161 TLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRR------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRD 228 (821)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHccc------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 34455677777777788999999999999999988653 23689999999999999999999987
Q ss_pred ------cceeeeeeccccc--ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975 274 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 345 (496)
Q Consensus 274 ------~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l 345 (496)
+.+++.++++.+. .+|.|+++.+++.+++.+....+.||||||+|.+.+..... +.....+.+. ..+
T Consensus 229 vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~~~~a~lLk----p~l 303 (821)
T CHL00095 229 VPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GAIDAANILK----PAL 303 (821)
T ss_pred CChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-CcccHHHHhH----HHH
Confidence 4789999998876 47899999999999999988778999999999998764322 1122222222 222
Q ss_pred cCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCC-----CCCcceeeecc
Q 010975 346 DGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-----SLPYDLLVERT 415 (496)
Q Consensus 346 d~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~-----~~~l~~la~~t 415 (496)
.++. +.+|++|+..+ ..|+++.+||.. +.++.|+.++...|++.....+...+ +..+..++..+
T Consensus 304 ----~rg~-l~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls 377 (821)
T CHL00095 304 ----ARGE-LQCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS 377 (821)
T ss_pred ----hCCC-cEEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 2344 55666666552 478999999976 89999999999999887653322111 12234455666
Q ss_pred cCCcC
Q 010975 416 EGYSG 420 (496)
Q Consensus 416 ~g~s~ 420 (496)
.+|.+
T Consensus 378 ~~yi~ 382 (821)
T CHL00095 378 DQYIA 382 (821)
T ss_pred hccCc
Confidence 66654
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=9.2e-17 Score=171.91 Aligned_cols=213 Identities=19% Similarity=0.218 Sum_probs=139.1
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc---------
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------- 275 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~--------- 275 (496)
.+.+++++.+|+|++|++++++.|...+.... .++++||+|||||||||+|+++|+.++.
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~-----------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc 71 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNS-----------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC 71 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC
Confidence 45667889999999999999999988775432 2356899999999999999999998864
Q ss_pred ---------------eeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975 276 ---------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR 336 (496)
Q Consensus 276 ---------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~ 336 (496)
.++.++++.- ..-..++.+.+.+.. ....||+|||+|.+...
T Consensus 72 ~~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~------------- 132 (472)
T PRK14962 72 NECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE------------- 132 (472)
T ss_pred cccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-------------
Confidence 2444443211 112344555544432 23469999999998532
Q ss_pred hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeeccc
Q 010975 337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTE 416 (496)
Q Consensus 337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~ 416 (496)
.++.|+..++. .+..+++|++|+.+..+++++++|+. .+.+..++.++...+++..+......
T Consensus 133 a~~~LLk~LE~---p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~------------- 195 (472)
T PRK14962 133 AFNALLKTLEE---PPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIE------------- 195 (472)
T ss_pred HHHHHHHHHHh---CCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCC-------------
Confidence 23557777763 33345566666678889999999996 59999999999999998887654332
Q ss_pred CCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975 417 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 473 (496)
Q Consensus 417 g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~ 473 (496)
++...+..+++ .+.+.+|++++.++...... . ..||.+|+.+++....
T Consensus 196 -i~~eal~~Ia~-~s~GdlR~aln~Le~l~~~~-~------~~It~e~V~~~l~~~~ 243 (472)
T PRK14962 196 -IDREALSFIAK-RASGGLRDALTMLEQVWKFS-E------GKITLETVHEALGLIP 243 (472)
T ss_pred -CCHHHHHHHHH-HhCCCHHHHHHHHHHHHHhc-C------CCCCHHHHHHHHcCCC
Confidence 11122222222 22234444555444322111 0 1278888888886654
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.6e-16 Score=172.28 Aligned_cols=162 Identities=18% Similarity=0.241 Sum_probs=120.5
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc----------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 275 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---------- 275 (496)
+.+++++.+|+||+|++++++.|...+.... .++.+||+||+|+|||++|+.+|+.+++
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~gR-----------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQR-----------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhCC-----------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 4567889999999999999999999885432 2356899999999999999999999865
Q ss_pred -------------------eeeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhH
Q 010975 276 -------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE 332 (496)
Q Consensus 276 -------------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~ 332 (496)
.+++++..+ ...-..++.+.+.+. ..+..|++|||+|.|..
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------- 138 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------- 138 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH----------
Confidence 122222221 012234555555443 23346999999999842
Q ss_pred HhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 333 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 333 ~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
...+.||+.|+ .....+.+|.+||+++.|.+.+++||.. +.|..++.++..+.++.++....
T Consensus 139 ---~AaNALLKTLE---EPP~~v~FILaTtep~kLlpTIrSRCq~-f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 139 ---HAFNAMLKTLE---EPPEHVKFILATTDPQKIPVTVLSRCLQ-FNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred ---HHHHHHHHhhc---cCCCCceEEEEeCChHhhhhHHHHHHHh-cccCCCChHHHHHHHHHHHHHcC
Confidence 23467888887 3445577888889999999999999955 99999999999998888776543
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.8e-16 Score=174.00 Aligned_cols=178 Identities=19% Similarity=0.217 Sum_probs=126.0
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|++|+|++++++.|...+... ..++.+||+||+|||||++++.+|+.+++.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 456788999999999999999999887532 123567999999999999999999988642
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
+++++..+ ...-..++.+++.+.. ....|+||||+|.|.. ..
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------~A 135 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------HA 135 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-------------HH
Confidence 23333221 1122345555555432 2346999999999842 23
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCC-CCCcceeeeccc
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 416 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~-~~~l~~la~~t~ 416 (496)
.+.||+.|+. ....+.||.+||+++.|.+.+++||.. +.|..++.++....++.++....... +..+..+++.++
T Consensus 136 ~NALLKtLEE---PP~~v~FILaTtd~~KIp~TIrSRCq~-f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~ 211 (830)
T PRK07003 136 FNAMLKTLEE---PPPHVKFILATTDPQKIPVTVLSRCLQ-FNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQ 211 (830)
T ss_pred HHHHHHHHHh---cCCCeEEEEEECChhhccchhhhheEE-EecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4668887763 344577888889999999999999955 99999999999999998886654432 122333444444
Q ss_pred C
Q 010975 417 G 417 (496)
Q Consensus 417 g 417 (496)
|
T Consensus 212 G 212 (830)
T PRK07003 212 G 212 (830)
T ss_pred C
Confidence 4
No 67
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.1e-16 Score=174.44 Aligned_cols=192 Identities=25% Similarity=0.368 Sum_probs=155.6
Q ss_pred HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----
Q 010975 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 273 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---- 273 (496)
..++..+++.......+++.++|.++.++++.+++....+ ++.+|.|+||+|||.++..+|...
T Consensus 152 ~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~K------------NNPvLiGEpGVGKTAIvEGLA~rIv~g~ 219 (786)
T COG0542 152 ALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTK------------NNPVLVGEPGVGKTAIVEGLAQRIVNGD 219 (786)
T ss_pred hHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCC------------CCCeEecCCCCCHHHHHHHHHHHHhcCC
Confidence 4455667888888889999999999999999999977543 689999999999999999999987
Q ss_pred ------cceeeeeecccccc--cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975 274 ------KTTFFNISASSVVS--KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 345 (496)
Q Consensus 274 ------~~~~i~v~~s~l~~--~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l 345 (496)
+..++.++.+.+.. +|.|+++.+++.++++.....+.||||||||.+.+.....+...++++-++..|
T Consensus 220 VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL---- 295 (786)
T COG0542 220 VPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL---- 295 (786)
T ss_pred CCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----
Confidence 67889999988875 799999999999999999888899999999999877433221244455554444
Q ss_pred cCccccCcEEEEEeccCCcc----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcce
Q 010975 346 DGLTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL 410 (496)
Q Consensus 346 d~~~~~~~~viVIatTn~p~----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~ 410 (496)
.++.--+|.|||-..+ +-|+||-|||+. |.+..|+.++-..|++.+...+..++++.+.+
T Consensus 296 ----ARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D 359 (786)
T COG0542 296 ----ARGELRCIGATTLDEYRKYIEKDAALERRFQK-VLVDEPSVEDTIAILRGLKERYEAHHGVRITD 359 (786)
T ss_pred ----hcCCeEEEEeccHHHHHHHhhhchHHHhcCce-eeCCCCCHHHHHHHHHHHHHHHHHccCceecH
Confidence 3566555666664432 478999999987 99999999999999999988888777765443
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=3.7e-16 Score=165.47 Aligned_cols=211 Identities=23% Similarity=0.316 Sum_probs=139.7
Q ss_pred hhhCCCCCccchhhcchHHHHH---HhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 206 IIRGSPDVKWESIKGLENAKRL---LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~---L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
+.+++++.+++|++|++++... |.+.+... ...+++|+||||||||++|+++|+.++.+++.+++
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAG------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcC------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 3456678889999999999766 77776432 12589999999999999999999999999999987
Q ss_pred ccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEE
Q 010975 283 SSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 358 (496)
Q Consensus 283 s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI 358 (496)
... ....++.+++.+. .....||||||+|.+... ..+.|+..++. ...+++.
T Consensus 70 ~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~----~~iilI~ 125 (413)
T PRK13342 70 VTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVED----GTITLIG 125 (413)
T ss_pred ccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhc----CcEEEEE
Confidence 542 1234455555443 224579999999988432 22445655542 3334444
Q ss_pred eccCCc-ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHH
Q 010975 359 AATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 437 (496)
Q Consensus 359 atTn~p-~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR 437 (496)
+||..+ ..+++++++|| ..+.++.++.++...+++..+...... . -.++...+..+++.+ .+.+|+
T Consensus 126 att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~--~---------i~i~~~al~~l~~~s-~Gd~R~ 192 (413)
T PRK13342 126 ATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERG--L---------VELDDEALDALARLA-NGDARR 192 (413)
T ss_pred eCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcC--C---------CCCCHHHHHHHHHhC-CCCHHH
Confidence 444444 57999999999 559999999999999999877543111 0 012222233333332 455666
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975 438 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 473 (496)
Q Consensus 438 ~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~ 473 (496)
+++.++..... ...|+.+++..++....
T Consensus 193 aln~Le~~~~~--------~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 193 ALNLLELAALG--------VDSITLELLEEALQKRA 220 (413)
T ss_pred HHHHHHHHHHc--------cCCCCHHHHHHHHhhhh
Confidence 66655543322 12489999998887653
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=99.65 E-value=5.5e-16 Score=158.73 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=116.2
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-----ceeeee
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 280 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-----~~~i~v 280 (496)
|.+++++.+++|++|++++++.|..++... ...++||+||||||||++|+++|+++. ..++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 677889999999999999999998876432 124799999999999999999999973 235666
Q ss_pred ecccccccccCChHHHHHHHHHHh---h----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975 281 SASSVVSKWRGDSEKLIKVLFELA---R----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 353 (496)
Q Consensus 281 ~~s~l~~~~~G~~e~~l~~lf~~a---~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 353 (496)
+.++..+. ..++..+... . ...+.|++|||+|.+... .++.|+..++.. ..
T Consensus 71 n~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~---~~ 128 (319)
T PLN03025 71 NASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-------------AQQALRRTMEIY---SN 128 (319)
T ss_pred cccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-------------HHHHHHHHHhcc---cC
Confidence 66554221 1233322211 1 123469999999998533 124455666532 22
Q ss_pred EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975 354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 403 (496)
Q Consensus 354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~ 403 (496)
...+|.+||.+..+.+++++|+. .+.|+.|+.++....++..+...+..
T Consensus 129 ~t~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CceEEEEeCCccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 23456678888889999999995 59999999999999999887665443
No 70
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.6e-16 Score=168.11 Aligned_cols=214 Identities=19% Similarity=0.207 Sum_probs=140.8
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|+|++|++++++.|...+.... .++.+||+||||||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~~-----------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQY-----------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhCC-----------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 5677889999999999999999999885421 23568999999999999999999998643
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
++++++++- ..-..++.+.+.+.. .+..|++|||+|.|... .
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a 135 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------S 135 (509)
T ss_pred CCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------H
Confidence 344443211 122345555554432 23469999999998432 3
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG 417 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g 417 (496)
.+.|+..++. .+..+.+|.+|+++..+.+.+++|+.. +.+..++.++....++..+.......
T Consensus 136 ~naLLk~LEe---pp~~~~fIlattd~~kl~~tI~SRc~~-~~f~~l~~~~i~~~l~~il~~egi~~------------- 198 (509)
T PRK14958 136 FNALLKTLEE---PPSHVKFILATTDHHKLPVTVLSRCLQ-FHLAQLPPLQIAAHCQHLLKEENVEF------------- 198 (509)
T ss_pred HHHHHHHHhc---cCCCeEEEEEECChHhchHHHHHHhhh-hhcCCCCHHHHHHHHHHHHHHcCCCC-------------
Confidence 4678888873 334466667778888899999999955 89999998888888887776554331
Q ss_pred CcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975 418 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 475 (496)
Q Consensus 418 ~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps 475 (496)
....+..++ +++.+.+|++++.++..... . ...||.+|+...+....+.
T Consensus 199 -~~~al~~ia-~~s~GslR~al~lLdq~ia~--~-----~~~It~~~V~~~lg~~~~~ 247 (509)
T PRK14958 199 -ENAALDLLA-RAANGSVRDALSLLDQSIAY--G-----NGKVLIADVKTMLGTIEPL 247 (509)
T ss_pred -CHHHHHHHH-HHcCCcHHHHHHHHHHHHhc--C-----CCCcCHHHHHHHHCCCCHH
Confidence 112222222 22234455555544432211 1 1237777777776655443
No 71
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.6e-16 Score=168.33 Aligned_cols=238 Identities=39% Similarity=0.558 Sum_probs=199.7
Q ss_pred ccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceeh
Q 010975 236 IKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFL 314 (496)
Q Consensus 236 ~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfI 314 (496)
+.+++.+... ..++++++++||||+|||+++++++.. +..+..++..+...++.|..+...+.++..+....|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 3444444443 677899999999999999999999999 76668888889999999999999999999999999999999
Q ss_pred hhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHH
Q 010975 315 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAM 392 (496)
Q Consensus 315 DEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~I 392 (496)
||+|.+.+.+.. ......+.+..+++..+++.. +.. +++++.+|.+..+++++++ ||+..+.+..|+...+.++
T Consensus 83 d~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS--DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc--cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999988766 344566788899999999998 777 8899999999999999988 9999999999999999999
Q ss_pred HHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975 393 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 472 (496)
Q Consensus 393 l~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~ 472 (496)
+...........+.+...++..+.|++++++..+++++...+++|.. ........++.+|+.++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------------~~~~~~~~~~~~~~~~~l~~~ 226 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------------DLVGEYIGVTEDDFEEALKKV 226 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------------ccCcccccccHHHHHHHHHhc
Confidence 99988877777778888999999999999999999999999988864 111122348999999999999
Q ss_pred CCCccc--hhhhhhhhccccc
Q 010975 473 RPSAHL--HAHRYEKFNADYG 491 (496)
Q Consensus 473 ~Ps~~~--~~~~~~~~~~~~g 491 (496)
.|+ .. ....-..|.+..|
T Consensus 227 ~~~-~~~~~~~~~v~~~digg 246 (494)
T COG0464 227 LPS-RGVLFEDEDVTLDDIGG 246 (494)
T ss_pred Ccc-cccccCCCCcceehhhc
Confidence 997 22 2344455655554
No 72
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.63 E-value=1e-15 Score=153.71 Aligned_cols=159 Identities=22% Similarity=0.373 Sum_probs=110.6
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---eeeee
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNIS 281 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---~i~v~ 281 (496)
.+.+..++.+++|.+|+++..-+ .-.+...+... .-.+++||||||||||+||+.|+.....+ |++++
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q-~gllrs~ieq~--------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN--------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCc-chHHHHHHHcC--------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 44556678889999999887654 22221111111 12579999999999999999999988655 77776
Q ss_pred cccccccccCChHHHHHHHHHHhhhc-----CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975 282 ASSVVSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 356 (496)
Q Consensus 282 ~s~l~~~~~G~~e~~l~~lf~~a~~~-----~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 356 (496)
+..- ....++.+|+.++.. +..|||||||+++... .++.||-.++ .+..++
T Consensus 198 At~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks-------------QQD~fLP~VE----~G~I~l 253 (554)
T KOG2028|consen 198 ATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS-------------QQDTFLPHVE----NGDITL 253 (554)
T ss_pred cccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh-------------hhhcccceec----cCceEE
Confidence 6442 346678888887652 3469999999998533 2344555443 455566
Q ss_pred EEeccCCc-ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975 357 VLAATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLL 397 (496)
Q Consensus 357 VIatTn~p-~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l 397 (496)
|.|||.+| ..++.+|++||.. +.+...+.++...|+.+-.
T Consensus 254 IGATTENPSFqln~aLlSRC~V-fvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLSRCRV-FVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred EecccCCCccchhHHHHhccce-eEeccCCHHHHHHHHHHHH
Confidence 66777666 6799999999955 6667777777888877743
No 73
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=7.8e-16 Score=167.44 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=119.5
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc----------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 275 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---------- 275 (496)
+.+++++.+|++++|++.+++.|...+... ..++.+||+||||+|||++|+++|+.+++
T Consensus 5 LarKyRPktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 5 LARKYRPRNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 456788899999999999999999988532 12367899999999999999999999865
Q ss_pred --------------eeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 276 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 276 --------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
.++.+++++- ..-..++.+...+.. .+..|++|||+|.|... .
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A 134 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------S 134 (702)
T ss_pred cCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------H
Confidence 2333333211 122345555554432 23469999999988422 3
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
.+.|+..++. ....+.+|.+|+.+..+.+.+++|+.. +.|..++.++....++..+.....
T Consensus 135 ~NALLKtLEE---PP~~v~FILaTtd~~kIp~TIlSRCq~-feFkpLs~eEI~k~L~~Il~kEgI 195 (702)
T PRK14960 135 FNALLKTLEE---PPEHVKFLFATTDPQKLPITVISRCLQ-FTLRPLAVDEITKHLGAILEKEQI 195 (702)
T ss_pred HHHHHHHHhc---CCCCcEEEEEECChHhhhHHHHHhhhe-eeccCCCHHHHHHHHHHHHHHcCC
Confidence 4567777773 334456677778888899999999965 999999999999999888866544
No 74
>PRK04195 replication factor C large subunit; Provisional
Probab=99.62 E-value=9.5e-16 Score=165.40 Aligned_cols=170 Identities=23% Similarity=0.270 Sum_probs=123.8
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 284 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~ 284 (496)
.|.+++.+.++++++|++++++.|.+++..... ..+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 477889999999999999999999998854331 123578999999999999999999999999999999887
Q ss_pred ccccccCChHHHHHHHHHHhhh------cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEE
Q 010975 285 VVSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 358 (496)
Q Consensus 285 l~~~~~G~~e~~l~~lf~~a~~------~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI 358 (496)
... ...+..+...+.. ..+.||+|||+|.+..... ......|+..++. .. ..+|
T Consensus 75 ~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~---~~--~~iI 134 (482)
T PRK04195 75 QRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKK---AK--QPII 134 (482)
T ss_pred ccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHc---CC--CCEE
Confidence 542 2233333333322 2457999999999854211 1122445555541 11 2356
Q ss_pred eccCCcccccH-HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975 359 AATNLPWELDA-AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 403 (496)
Q Consensus 359 atTn~p~~Ld~-aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~ 403 (496)
+++|.++.+.. .+++|+. .+.|+.|+.++...+++.++......
T Consensus 135 li~n~~~~~~~k~Lrsr~~-~I~f~~~~~~~i~~~L~~i~~~egi~ 179 (482)
T PRK04195 135 LTANDPYDPSLRELRNACL-MIEFKRLSTRSIVPVLKRICRKEGIE 179 (482)
T ss_pred EeccCccccchhhHhccce-EEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 67888888877 6777774 49999999999999999988665443
No 75
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.5e-15 Score=158.23 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=115.5
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|++++|++++++.+...+.... .++.+||+||||+|||++|+++|+.++..
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~-----------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLGR-----------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHcCC-----------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 5567888999999999999999998775421 23568999999999999999999988642
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
++.++++. ...-..++.+.+.+.. ....|++|||+|.+.. ..
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-------------~a 135 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-------------HS 135 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-------------HH
Confidence 11111110 0122345555555432 2235999999998842 22
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
.+.|+..++. .+..+.+|.+|+.++.+.+++++|+.. +.+++|+.++...+++..+...+
T Consensus 136 ~naLLk~lEe---~~~~~~fIl~t~~~~~l~~tI~SRc~~-~~~~~l~~~el~~~L~~~~~~~g 195 (363)
T PRK14961 136 FNALLKTLEE---PPQHIKFILATTDVEKIPKTILSRCLQ-FKLKIISEEKIFNFLKYILIKES 195 (363)
T ss_pred HHHHHHHHhc---CCCCeEEEEEcCChHhhhHHHHhhceE-EeCCCCCHHHHHHHHHHHHHHcC
Confidence 3557777763 333455666777788899999999954 99999999999999998776544
No 76
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.61 E-value=7.9e-16 Score=151.94 Aligned_cols=182 Identities=21% Similarity=0.236 Sum_probs=130.1
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc------ee
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------TF 277 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~------~~ 277 (496)
+.|.+++.+.+++++.|++.+++.|...+.. .. ..++|||||||||||+.|+++|++++. .+
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~-~~-----------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR-RI-----------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh-cC-----------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 5678888999999999999999999998865 21 148999999999999999999999965 35
Q ss_pred eeeecccccccccCChHHHHHHHHHHhhh---------cC-CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC
Q 010975 278 FNISASSVVSKWRGDSEKLIKVLFELARH---------HA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 347 (496)
Q Consensus 278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~---------~~-p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 347 (496)
...+.++-.+..++ ..++. -|++... .+ +.|++|||.|.|..+ ...+|...|+.
T Consensus 92 l~lnaSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~ 155 (346)
T KOG0989|consen 92 LELNASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTMED 155 (346)
T ss_pred hhhcccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHhc
Confidence 56666665554321 11111 1222211 11 259999999999754 33567777774
Q ss_pred ccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC-CcceeeecccC
Q 010975 348 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 417 (496)
Q Consensus 348 ~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~-~l~~la~~t~g 417 (496)
. ...+.+|..||.++.+...+.+|+.+ +.|+....+.....|+.+....+..-+. .++.++..++|
T Consensus 156 ~---s~~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 156 F---SRTTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred c---ccceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 3 33466777899999999999999988 8888888888888888888776665332 24445554443
No 77
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2e-15 Score=165.93 Aligned_cols=162 Identities=22% Similarity=0.264 Sum_probs=118.1
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|+|++|++.+++.|...+.... .++.+||+||+|+|||++|+.+|+.+++.
T Consensus 6 La~KyRP~~f~divGQe~vv~~L~~~l~~~r-----------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALDLGR-----------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 4566788999999999999999998885422 23457999999999999999999999663
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
++.++..+ ...-..++.+.+.+.. ....|++|||+|.|.. ..
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------~a 135 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------HS 135 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-------------HH
Confidence 22222211 0112335555544332 2346999999998842 34
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
.+.||+.|+ ..+..+.+|.+|+++..+.+.+++|+ ..+.|..++.++....++..+....
T Consensus 136 ~NALLKtLE---EPp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 136 FNALLKTLE---EPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred HHHHHHHHH---cCCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 577888887 34445667777888889999999998 4599999999999998888875543
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.5e-15 Score=169.47 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=116.5
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceee-e-eecc
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF-N-ISAS 283 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i-~-v~~s 283 (496)
+.+++++.+|++|+|++++++.|...+.... .++.+||+||||||||++|+++|+.+++.-. . ..|.
T Consensus 6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~~r-----------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALTQQR-----------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhCC-----------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 4567888999999999999999998875421 2345799999999999999999999965411 0 0000
Q ss_pred ------cccc-------cccC---ChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhh
Q 010975 284 ------SVVS-------KWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 343 (496)
Q Consensus 284 ------~l~~-------~~~G---~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~ 343 (496)
.+.. .+.+ ..-..++.+.+.+.. ....|++|||+|.|. ....+.|++
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-------------~eAqNALLK 141 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-------------RSSFNALLK 141 (944)
T ss_pred CchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------HHHHHHHHH
Confidence 0000 0001 112334555544432 234699999999984 334577888
Q ss_pred hccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975 344 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 344 ~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
.|+. .+..+.+|.+|+.+..|.+.+++|+.. +.|..++.++....+++.+...
T Consensus 142 tLEE---PP~~vrFILaTTe~~kLl~TIlSRCq~-f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 142 TLEE---PPEHVKFLLATTDPQKLPVTVLSRCLQ-FNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred HHhc---cCCCeEEEEECCCchhchHHHHHhheE-EeCCCCCHHHHHHHHHHHHHHc
Confidence 8873 344455666788888899999999955 9999999999999888877654
No 79
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.60 E-value=2.1e-15 Score=154.56 Aligned_cols=169 Identities=21% Similarity=0.254 Sum_probs=114.7
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-----ceeee
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN 279 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-----~~~i~ 279 (496)
-|.+++.+.+|++++|++.+++.|...+.... ..+++|+||||||||++|+++++++. .+++.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~------------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~ 71 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPN------------LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTE 71 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence 46778889999999999999999999875321 13799999999999999999999883 35678
Q ss_pred eeccccccccc-------------CC-------hHHHHHHHHHHhhh-----cCCcceehhhHHHHHhhhcCCcchhHHh
Q 010975 280 ISASSVVSKWR-------------GD-------SEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEAS 334 (496)
Q Consensus 280 v~~s~l~~~~~-------------G~-------~e~~l~~lf~~a~~-----~~p~ILfIDEID~L~~~r~~~~~~~~~~ 334 (496)
++++++..... +. ....++.+...... ..+.+|+|||+|.+...
T Consensus 72 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~----------- 140 (337)
T PRK12402 72 FNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED----------- 140 (337)
T ss_pred echhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------
Confidence 88766532210 00 11223333333222 22469999999987322
Q ss_pred hhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 335 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 335 ~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
....|...++.... . ..+|.+++.+..+.+++.+|+. .+.+.+|+.++...+++..+.....
T Consensus 141 --~~~~L~~~le~~~~--~-~~~Il~~~~~~~~~~~L~sr~~-~v~~~~~~~~~~~~~l~~~~~~~~~ 202 (337)
T PRK12402 141 --AQQALRRIMEQYSR--T-CRFIIATRQPSKLIPPIRSRCL-PLFFRAPTDDELVDVLESIAEAEGV 202 (337)
T ss_pred --HHHHHHHHHHhccC--C-CeEEEEeCChhhCchhhcCCce-EEEecCCCHHHHHHHHHHHHHHcCC
Confidence 12334455543222 2 2344456666677788999985 4899999999999999988765543
No 80
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3e-15 Score=164.14 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=119.6
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee--------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF-------- 277 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~-------- 277 (496)
+.+++++.+|+||+|++++++.|...+... ..++++||+||+|+|||++|+++|+.++++-
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 456788999999999999999999987642 2346799999999999999999999885431
Q ss_pred ----------------eeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 278 ----------------FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 278 ----------------i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
+.++... ......++.+++.+.. ....|++|||+|.|.. ..
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-------------~A 135 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-------------SA 135 (709)
T ss_pred ccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-------------HH
Confidence 1222111 1223456666665432 2346999999987632 23
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
.+.|++.|+. ....+.+|.+|+.+..+...+++||.. +.|+.++.++....++..+.....
T Consensus 136 ~NALLKtLEE---Pp~~v~fILaTtd~~kL~~TIrSRC~~-f~f~~Ls~eeI~~~L~~Il~kEgi 196 (709)
T PRK08691 136 FNAMLKTLEE---PPEHVKFILATTDPHKVPVTVLSRCLQ-FVLRNMTAQQVADHLAHVLDSEKI 196 (709)
T ss_pred HHHHHHHHHh---CCCCcEEEEEeCCccccchHHHHHHhh-hhcCCCCHHHHHHHHHHHHHHcCC
Confidence 4568888773 334466777788898999999999954 999999999999999988876543
No 81
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3.1e-15 Score=159.98 Aligned_cols=164 Identities=19% Similarity=0.211 Sum_probs=121.0
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc----------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 275 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---------- 275 (496)
+.+++++.+|+|++|++.+++.|...+... ..++++||+||||+|||++|+.+|+.+++
T Consensus 3 la~KyRP~~f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hhHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 346788899999999999999998877542 23468999999999999999999997642
Q ss_pred --------------eeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 276 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 276 --------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
.++++++++- ..-..++.+.+.+.. ....|++|||+|.|.. ..
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------~A 132 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------SA 132 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-------------HH
Confidence 2344444321 123456666666543 2346999999988732 23
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 403 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~ 403 (496)
.+.|+..++. .+..+.+|.+|+.+..+.+.+++|+.. +.+..++.++....++..+...+..
T Consensus 133 ~NaLLK~LEe---Pp~~v~fIlatte~~Kl~~tI~SRc~~-~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 133 FNALLKTLEE---PAPHVKFILATTEVKKIPVTIISRCQR-FDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred HHHHHHHHhC---CCCCeEEEEEeCChHHHHHHHHHhhee-eecccccHHHHHHHHHHHHHHcCCC
Confidence 4678888873 334466666778888899999999965 9999999999999999887765443
No 82
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.4e-15 Score=160.68 Aligned_cols=164 Identities=19% Similarity=0.219 Sum_probs=120.2
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee-------
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF------- 277 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~------- 277 (496)
.+.+++++.+|+|++|++.+++.|...+... ..+.++||+||||||||++|+++|+.+++.-
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~ 78 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT 78 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence 4567789999999999999999998866432 1246899999999999999999999986521
Q ss_pred ---------------------eeeecccccccccCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhH
Q 010975 278 ---------------------FNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHE 332 (496)
Q Consensus 278 ---------------------i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~ 332 (496)
+++++.+ ......++.+++.+... ...|++|||+|.+..
T Consensus 79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------- 142 (507)
T PRK06645 79 IKTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------- 142 (507)
T ss_pred cCCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH----------
Confidence 1111110 12335566777666532 345999999998842
Q ss_pred HhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 333 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 333 ~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
...+.|+..++ ..+..+++|.+|+.++.+.+++++|+.. +.+..++.++...+++..+.....
T Consensus 143 ---~a~naLLk~LE---epp~~~vfI~aTte~~kI~~tI~SRc~~-~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 143 ---GAFNALLKTLE---EPPPHIIFIFATTEVQKIPATIISRCQR-YDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred ---HHHHHHHHHHh---hcCCCEEEEEEeCChHHhhHHHHhcceE-EEccCCCHHHHHHHHHHHHHHcCC
Confidence 23456777776 3344556666777888899999999954 899999999999999998876543
No 83
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.6e-15 Score=161.15 Aligned_cols=163 Identities=18% Similarity=0.186 Sum_probs=116.2
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce--------
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------- 276 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-------- 276 (496)
-+.+++++.+|+||+|++.+++.|...+.... ...++||+||||||||++|+.+|+.++..
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~r-----------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENR-----------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCC-----------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 35677889999999999999999999885421 13579999999999999999999998653
Q ss_pred ----------------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975 277 ----------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRR 336 (496)
Q Consensus 277 ----------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~ 336 (496)
++.++...- ..-..++.+.+.+. .....||+|||+|.|.. .
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-------------~ 134 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-------------E 134 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-------------H
Confidence 233332110 11123333332222 22346999999999842 2
Q ss_pred hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
..+.|+..++. ....+++|.+|+.+..+.+.+++|+.. +.|+.++.++...+++..+....
T Consensus 135 a~naLLk~LEE---P~~~~ifILaTt~~~kll~TI~SRcq~-i~F~pLs~~eL~~~L~~il~~eg 195 (624)
T PRK14959 135 AFNALLKTLEE---PPARVTFVLATTEPHKFPVTIVSRCQH-FTFTRLSEAGLEAHLTKVLGREG 195 (624)
T ss_pred HHHHHHHHhhc---cCCCEEEEEecCChhhhhHHHHhhhhc-cccCCCCHHHHHHHHHHHHHHcC
Confidence 34667887763 233466777788888888899999965 89999999999998888775543
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7e-15 Score=161.22 Aligned_cols=163 Identities=17% Similarity=0.227 Sum_probs=117.8
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|+|++|++++++.|...+.... .++.+||+||+|+|||++|+++|+.+++.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~r-----------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQR-----------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 4567888999999999999999999885432 23568999999999999999999988642
Q ss_pred --------------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhH
Q 010975 277 --------------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHE 332 (496)
Q Consensus 277 --------------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~ 332 (496)
++.++..+ ...-..++.+.+.+.. ....|++|||+|.|...
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~--------- 139 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT--------- 139 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH---------
Confidence 22222211 0112345666655432 22359999999998432
Q ss_pred HhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 333 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 333 ~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
..+.|+..++. .+..+.+|.+|+++..+.+.+++|+.. +.|..++.++....++..+...+.
T Consensus 140 ----a~NaLLKtLEE---PP~~~~fIL~Ttd~~kil~TIlSRc~~-~~f~~Ls~eei~~~L~~i~~~egi 201 (618)
T PRK14951 140 ----AFNAMLKTLEE---PPEYLKFVLATTDPQKVPVTVLSRCLQ-FNLRPMAPETVLEHLTQVLAAENV 201 (618)
T ss_pred ----HHHHHHHhccc---CCCCeEEEEEECCchhhhHHHHHhcee-eecCCCCHHHHHHHHHHHHHHcCC
Confidence 24667777763 344456666777888888899999954 999999999999988888765543
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.57 E-value=9.2e-15 Score=163.38 Aligned_cols=217 Identities=20% Similarity=0.299 Sum_probs=135.1
Q ss_pred hhhCCCCCccchhhcchHHHH---HHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 206 IIRGSPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~---~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
+.+++++.+++|++|++++.. .|.+.+... ...+++|+||||||||++|+++|+.++.+++.+++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~------------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKAD------------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 455667788999999999884 455555321 12579999999999999999999999999988887
Q ss_pred ccccccccCChHHHHHHHHHHhh-----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975 283 SSVVSKWRGDSEKLIKVLFELAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 357 (496)
Q Consensus 283 s~l~~~~~G~~e~~l~~lf~~a~-----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 357 (496)
.... ...++..+..+. .....+|||||+|.+... .++.|+..++ ... +++
T Consensus 86 ~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE----~g~-IiL 140 (725)
T PRK13341 86 VLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-------------QQDALLPWVE----NGT-ITL 140 (725)
T ss_pred hhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-------------HHHHHHHHhc----Cce-EEE
Confidence 5311 122333333321 123469999999988432 1234555554 233 444
Q ss_pred Ee-ccCCc-ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC---CCCCCcceeeecccCCcCCchhhcchhhhc
Q 010975 358 LA-ATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAM 432 (496)
Q Consensus 358 Ia-tTn~p-~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~---~~~~~l~~la~~t~g~s~~dI~~l~~~A~~ 432 (496)
|+ ||..+ ..+++++++|+. .+.+++++.+++..+++..+..... ..... ++...+..+++.+ .
T Consensus 141 I~aTTenp~~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~----------I~deaL~~La~~s-~ 208 (725)
T PRK13341 141 IGATTENPYFEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVD----------LEPEAEKHLVDVA-N 208 (725)
T ss_pred EEecCCChHhhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccC----------CCHHHHHHHHHhC-C
Confidence 44 44444 568999999985 5999999999999999998763211 01111 2223333444333 5
Q ss_pred cHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975 433 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 472 (496)
Q Consensus 433 ~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~ 472 (496)
+.+|++++.++.......... .....||.+++++++.+.
T Consensus 209 GD~R~lln~Le~a~~~~~~~~-~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 209 GDARSLLNALELAVESTPPDE-DGLIDITLAIAEESIQQR 247 (725)
T ss_pred CCHHHHHHHHHHHHHhcccCC-CCceeccHHHHHHHHHHh
Confidence 566666666654322111111 111237888888887663
No 86
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.57 E-value=6.2e-15 Score=150.27 Aligned_cols=163 Identities=17% Similarity=0.122 Sum_probs=115.1
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 284 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~ 284 (496)
.|.+++++.++++++|++++++.+...+... ..++.+||+||||+|||++|++++++.+.+++.+++++
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKKG-----------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 4677888999999999999999999887531 12345667999999999999999999999999998876
Q ss_pred ccccccCChHHHHHHHHHHhh-hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975 285 VVSKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 363 (496)
Q Consensus 285 l~~~~~G~~e~~l~~lf~~a~-~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~ 363 (496)
+. .......+........ ...+.||+|||+|.+... .....|...++.. ...+.+|++||.
T Consensus 79 --~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le~~---~~~~~~Ilt~n~ 140 (316)
T PHA02544 79 --CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY---SKNCSFIITANN 140 (316)
T ss_pred --cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------------HHHHHHHHHHHhc---CCCceEEEEcCC
Confidence 21 1111122222222111 124579999999987221 0112333344432 233567778999
Q ss_pred cccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975 364 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 397 (496)
Q Consensus 364 p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l 397 (496)
+..+.+++++||.. +.++.|+.+++..+++.++
T Consensus 141 ~~~l~~~l~sR~~~-i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 141 KNGIIEPLRSRCRV-IDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred hhhchHHHHhhceE-EEeCCCCHHHHHHHHHHHH
Confidence 99999999999964 8999999999988877643
No 87
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6.2e-15 Score=159.11 Aligned_cols=163 Identities=21% Similarity=0.274 Sum_probs=117.4
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|+|++|++++++.|...+.... .++.+||+||||||||++|+++|+.+...
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~-----------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~ 72 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGR-----------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE 72 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 4567889999999999999999999886421 23457999999999999999999988531
Q ss_pred --------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhh
Q 010975 277 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 338 (496)
Q Consensus 277 --------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~ 338 (496)
++.++.++ ...-..++.+.+.+.. ..+.|++|||+|.+. ....
T Consensus 73 C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------~~a~ 133 (504)
T PRK14963 73 CESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------KSAF 133 (504)
T ss_pred ChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------HHHH
Confidence 33333321 1122345555444332 245699999998763 2234
Q ss_pred hhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 339 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 339 ~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
+.|+..++. ....+++|.+|+.+..+.+.+.+|+.. +.|..|+.++....++..+.....
T Consensus 134 naLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc~~-~~f~~ls~~el~~~L~~i~~~egi 193 (504)
T PRK14963 134 NALLKTLEE---PPEHVIFILATTEPEKMPPTILSRTQH-FRFRRLTEEEIAGKLRRLLEAEGR 193 (504)
T ss_pred HHHHHHHHh---CCCCEEEEEEcCChhhCChHHhcceEE-EEecCCCHHHHHHHHHHHHHHcCC
Confidence 567777763 333455666778888999999999965 999999999999999988866543
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=4.2e-15 Score=155.81 Aligned_cols=187 Identities=16% Similarity=0.188 Sum_probs=123.6
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee----------------
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF---------------- 277 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~---------------- 277 (496)
.|++|+|++++++.|...+.....+...+. ...++++||+||||+|||++|+++|+.+...-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999999976554322221 22457899999999999999999999874431
Q ss_pred -------eeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975 278 -------FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 346 (496)
Q Consensus 278 -------i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 346 (496)
..+.... ..-.-..++.+++.+.. ....|++|||+|.|... ..+.|++.|+
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE 142 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE 142 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh
Confidence 1111100 01122346677766653 23459999999999432 2366888887
Q ss_pred CccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhc
Q 010975 347 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV 426 (496)
Q Consensus 347 ~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l 426 (496)
.. ... +++|.+|++++.+.++++||+. .+.|+.|+.++...++.... ... ......++..+.|..+..++.+
T Consensus 143 ep--~~~-~~fIL~a~~~~~llpTIrSRc~-~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 143 EP--PPR-TVWLLCAPSPEDVLPTIRSRCR-HVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred cC--CCC-CeEEEEECChHHChHHHHhhCe-EEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 32 233 4445555668899999999995 59999999999888776321 111 2223456777777766555544
Q ss_pred ch
Q 010975 427 SK 428 (496)
Q Consensus 427 ~~ 428 (496)
..
T Consensus 215 ~~ 216 (394)
T PRK07940 215 TD 216 (394)
T ss_pred cC
Confidence 43
No 89
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=6.8e-15 Score=160.95 Aligned_cols=163 Identities=21% Similarity=0.257 Sum_probs=119.4
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|++++|++++++.|...+... ..++.+||+||+|||||++|+.+|+.+++.
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 557788999999999999999999987542 123568999999999999999999988532
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
++.++++. +..-..++.+.+.+.. ....|++|||+|.|.. ..
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------~a 135 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------GA 135 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HH
Confidence 23333221 1223456666666543 2346999999998732 23
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
.+.|+..++. .+..+++|.+|+.++.+.+.+++|+.. +.|..|+.++....++..+...+.
T Consensus 136 ~naLLKtLEe---pp~~~ifIlatt~~~ki~~tI~SRc~~-~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 136 FNALLKTLEE---PPAHVIFILATTEPHKIPATILSRCQR-FDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred HHHHHHHhcC---CCCCeEEEEEeCChhhCcHHHHhHheE-EecCCCCHHHHHHHHHHHHHHcCC
Confidence 4677777763 334455666677888999999999965 899999999999999888765543
No 90
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.4e-15 Score=159.60 Aligned_cols=163 Identities=18% Similarity=0.171 Sum_probs=116.8
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|+|++|++++++.|...+.... .++.+||+||+|||||++|+++|+.+++.
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~~r-----------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGR-----------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 3467889999999999999999999885421 23458999999999999999999988642
Q ss_pred -----------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhh
Q 010975 277 -----------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASR 335 (496)
Q Consensus 277 -----------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~ 335 (496)
++.++++.. ..-..++.+.+.+.. ....|++|||+|.|..
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~------------- 132 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT------------- 132 (584)
T ss_pred ccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-------------
Confidence 222222111 012334444444322 2345999999988842
Q ss_pred hhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 336 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 336 ~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
...+.|+..|+. .+..+++|.+|+.+..+.+++++|+.. +.|..++.++....++.++.....
T Consensus 133 ~A~NALLK~LEE---pp~~~~fIL~tte~~kll~TI~SRc~~-~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 133 AGFNALLKIVEE---PPEHLIFIFATTEPEKVLPTIRSRTHH-YPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred HHHHHHHHHHhc---CCCCeEEEEEeCChHhhHHHHHHhceE-EEeeCCCHHHHHHHHHHHHHHcCC
Confidence 245678888873 344566677778888999999999854 999999999999888888766543
No 91
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1e-14 Score=158.08 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=114.6
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc----------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 275 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---------- 275 (496)
+.+++++.+|++++|++.+++.|...+.... .++.+||+||||+|||++|+.+|+.++.
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~r-----------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALETQK-----------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 4567788999999999999999998875421 2346899999999999999999998854
Q ss_pred --------------eeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 276 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 276 --------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
.++.++...- . .-..++.+++.+.. ....|++|||+|.+.. ..
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-------------~a 135 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-------------QS 135 (546)
T ss_pred ccHHHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-------------HH
Confidence 2222222110 1 11234445444432 2346999999998842 23
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
.+.|+..++. .+..+.+|.+|+++..+.+++++|+.. +.|..++.++....++..+....
T Consensus 136 ~naLLK~LEe---pp~~v~fIL~Ttd~~kil~tI~SRc~~-~~f~~Ls~~eI~~~L~~il~~eg 195 (546)
T PRK14957 136 FNALLKTLEE---PPEYVKFILATTDYHKIPVTILSRCIQ-LHLKHISQADIKDQLKIILAKEN 195 (546)
T ss_pred HHHHHHHHhc---CCCCceEEEEECChhhhhhhHHHheee-EEeCCCCHHHHHHHHHHHHHHcC
Confidence 4678888873 334455666667788888889999954 99999999998888888776543
No 92
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1.2e-14 Score=164.25 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=116.6
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|++|+|++++++.|...+.... .++.+||+||+|||||++|+.+|+.+++.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~r-----------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg 73 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSGR-----------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG 73 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhCC-----------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence 4577889999999999999999999875421 22458999999999999999999999642
Q ss_pred -----------------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhh
Q 010975 277 -----------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASR 335 (496)
Q Consensus 277 -----------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~ 335 (496)
++.++.... ..-..++.+.+.+. .....|+||||+|.|..
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~------------- 134 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP------------- 134 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------
Confidence 122222110 01233344333322 23456999999999843
Q ss_pred hhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 336 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 336 ~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
...+.||+.|+. ....+++|.+|+.++.|.+.|++|+.. +.|..++.++...+++.++.....
T Consensus 135 ~a~NaLLK~LEE---pP~~~~fIl~tt~~~kLl~TIrSRc~~-v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 135 QGFNALLKIVEE---PPEHLKFIFATTEPDKVIGTIRSRTHH-YPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred HHHHHHHHHHhC---CCCCeEEEEEeCChhhhhHHHHhheeE-EEeeCCCHHHHHHHHHHHHHHcCC
Confidence 234678888874 334456666778888899999999955 999999999999999888765543
No 93
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.1e-14 Score=158.34 Aligned_cols=162 Identities=19% Similarity=0.237 Sum_probs=116.6
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|+|++|++++++.|...+.... .++.+||+||||+|||++|+.+|+.++..
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~~~-----------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQR-----------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCC-----------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4567788899999999999999998875421 23568999999999999999999998652
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
++.++++. ......++.+.+.+.. ....|++|||+|.+.. ..
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-------------~a 135 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-------------SA 135 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-------------HH
Confidence 11222110 1123445666665542 2245999999998742 23
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
.+.|++.++. .+..+.+|.+|+++..+.+.+++|+. .+.|..++.++....++..+....
T Consensus 136 ~naLLK~LEe---pp~~~~fIL~t~d~~kil~tI~SRc~-~~~f~~l~~~~i~~~L~~il~~eg 195 (527)
T PRK14969 136 FNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPPPLIVSHLQHILEQEN 195 (527)
T ss_pred HHHHHHHHhC---CCCCEEEEEEeCChhhCchhHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcC
Confidence 4668888874 33445666677778888888999995 499999999999988888776543
No 94
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.3e-14 Score=159.47 Aligned_cols=163 Identities=18% Similarity=0.212 Sum_probs=118.6
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|+||+|++++++.|...+... ..++.+||+||+|+|||++|+++|+.++..
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 456788899999999999999999987542 123568999999999999999999998542
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
++++++.+ ...-..++.+.+.+.. ....|++|||+|.|.. ..
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-------------~a 135 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-------------NA 135 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-------------HH
Confidence 22222211 1122345666655542 2235999999998842 23
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
.+.|+..|+. .+..+++|.+|+.++.+.+.+++|+.. +.|..++.++....++.++...+.
T Consensus 136 ~naLLk~LEe---pp~~~~fIl~t~~~~kl~~tI~SRc~~-~~f~~l~~~~i~~~L~~i~~~egi 196 (576)
T PRK14965 136 FNALLKTLEE---PPPHVKFIFATTEPHKVPITILSRCQR-FDFRRIPLQKIVDRLRYIADQEGI 196 (576)
T ss_pred HHHHHHHHHc---CCCCeEEEEEeCChhhhhHHHHHhhhh-hhcCCCCHHHHHHHHHHHHHHhCC
Confidence 4678888873 344566777778889999999999965 999999999988888887765543
No 95
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.55 E-value=3e-15 Score=157.81 Aligned_cols=241 Identities=22% Similarity=0.234 Sum_probs=163.1
Q ss_pred CCCCCCcHHHHHHHHHHhhhhhh--C------CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCC
Q 010975 186 LLPNFDSAETRALAESLCRDIIR--G------SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 257 (496)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GP 257 (496)
+.|+|+...+...++..+..... + .......+++|.....+++.+.+...- .....|||+|+
T Consensus 103 l~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA----------~s~a~VLI~GE 172 (464)
T COG2204 103 LEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVA----------PSDASVLITGE 172 (464)
T ss_pred eeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHHHHHHh----------CCCCCEEEECC
Confidence 34667766666666655443221 1 112356789999999999998774432 33467999999
Q ss_pred CCChhHHHHHHHHhhh---cceeeeeeccccc---------ccccCChHHHHHH---HHHHhhhcCCcceehhhHHHHHh
Q 010975 258 PGTGKTMLAKAVATEC---KTTFFNISASSVV---------SKWRGDSEKLIKV---LFELARHHAPSTIFLDEIDAIIS 322 (496)
Q Consensus 258 pGtGKT~LAralA~~l---~~~~i~v~~s~l~---------~~~~G~~e~~l~~---lf~~a~~~~p~ILfIDEID~L~~ 322 (496)
+||||..+||+|++.. +.||+.+||..+. +...|.+.+.... .|+.|.+ ++||||||..|..
T Consensus 173 SGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl 249 (464)
T COG2204 173 SGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPL 249 (464)
T ss_pred CCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCH
Confidence 9999999999999988 5699999996543 3333444333332 5565555 8999999988754
Q ss_pred hhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc--cc-----ccHHHHHHhhhhhcccCCCHHHHHH----
Q 010975 323 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP--WE-----LDAAMLRRLEKRILVPLPDTEARRA---- 391 (496)
Q Consensus 323 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p--~~-----Ld~aL~rRf~~~I~~~~P~~eeR~~---- 391 (496)
..+ ....+.+++.-+..+.+.....-.|.||++||.. +. +-+.|.-|+.. +.+..|...||.+
T Consensus 250 ~~Q-----~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV-~~i~iPpLRER~EDIp~ 323 (464)
T COG2204 250 ELQ-----VKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNV-VPLRLPPLRERKEDIPL 323 (464)
T ss_pred HHH-----HHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhcc-ceecCCcccccchhHHH
Confidence 422 2233444444444444444445578999999987 22 44555568866 8999999999987
Q ss_pred HHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCC
Q 010975 392 MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 452 (496)
Q Consensus 392 Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~ 452 (496)
++++++.+.... ......++++..+..+.++.|.+++|++.+.++...-.+..+
T Consensus 324 L~~hfl~~~~~~-------~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~~ 377 (464)
T COG2204 324 LAEHFLKRFAAE-------LGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSEGP 377 (464)
T ss_pred HHHHHHHHHHHH-------cCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCcc
Confidence 555555443322 113356788899999999999999999999888766554443
No 96
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.55 E-value=9.2e-16 Score=161.81 Aligned_cols=232 Identities=24% Similarity=0.300 Sum_probs=162.1
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 285 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l 285 (496)
.....+|++|+|......++.+.....- ..+..|||.|.+||||..+|++|++.+ +.||+.+||..+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIA----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhc----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 4556789999999999988888764432 334689999999999999999999988 789999999654
Q ss_pred ---------cccccCChHHHHH----HHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccC
Q 010975 286 ---------VSKWRGDSEKLIK----VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 352 (496)
Q Consensus 286 ---------~~~~~G~~e~~l~----~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 352 (496)
++-..|++.+..+ .+|+.|.. +.||||||..|... ......+.+++.-+..+.+.....
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl~-----LQaKLLRVLQEkei~rvG~t~~~~ 379 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPLP-----LQAKLLRVLQEKEIERVGGTKPIP 379 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCHH-----HHHHHHHHHhhceEEecCCCCcee
Confidence 3333444444433 36777766 79999999887433 223334445555555556666667
Q ss_pred cEEEEEeccCCc--ccccHHHHH-----HhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcCC
Q 010975 353 ELVFVLAATNLP--WELDAAMLR-----RLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGS 421 (496)
Q Consensus 353 ~~viVIatTn~p--~~Ld~aL~r-----Rf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~~ 421 (496)
-.|.||||||.. +.+...-+| |... +.+..|...+|.+ +...++.+.... ..+...|.++.
T Consensus 380 vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV-~~i~iPPLReR~eDI~~L~~~Fl~k~s~~-------~~~~v~~ls~~ 451 (560)
T COG3829 380 VDVRIIAATNRNLEKMIAEGTFREDLYYRLNV-IPITIPPLRERKEDIPLLAEYFLDKFSRR-------YGRNVKGLSPD 451 (560)
T ss_pred eEEEEEeccCcCHHHHHhcCcchhhheeeece-eeecCCCcccCcchHHHHHHHHHHHHHHH-------cCCCcccCCHH
Confidence 789999999986 223322222 7765 8888898888876 334444432222 23446678889
Q ss_pred chhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHH-HHhhc
Q 010975 422 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE-IALKN 471 (496)
Q Consensus 422 dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~-~Al~~ 471 (496)
.+..+.+..|.+++|++.+.+|+..-+...+.. |+.+|+- .++..
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~~~~~~-----I~~~~lp~~~l~~ 497 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLVESDGL-----IDADDLPAFALEE 497 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhccCCcce-----eehhhcchhhhcc
Confidence 999999999999999999999877654444443 6666665 44444
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.9e-14 Score=156.44 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=117.6
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc---------
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------- 275 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~--------- 275 (496)
.+.+++++.+|++++|++.+++.|...+... ..++++||+||||+|||++|+++|+.+.+
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 4667889999999999999999999877432 12367999999999999999999998843
Q ss_pred ---------------eeeeeecccccccccCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975 276 ---------------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRR 336 (496)
Q Consensus 276 ---------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~~~~~ 336 (496)
.++.++++.. ..-..++.+.+.+... ...|++|||+|.|...
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~------------- 134 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS------------- 134 (605)
T ss_pred cccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-------------
Confidence 1222222110 1223455555544432 2359999999988322
Q ss_pred hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
..+.|+..++. .+..+++|.+|+.+..+.+++++|+.. +.+..++.++....++..+...+
T Consensus 135 A~NaLLKtLEE---Pp~~tvfIL~Tt~~~KLl~TI~SRcq~-ieF~~Ls~~eL~~~L~~il~keg 195 (605)
T PRK05896 135 AWNALLKTLEE---PPKHVVFIFATTEFQKIPLTIISRCQR-YNFKKLNNSELQELLKSIAKKEK 195 (605)
T ss_pred HHHHHHHHHHh---CCCcEEEEEECCChHhhhHHHHhhhhh-cccCCCCHHHHHHHHHHHHHHcC
Confidence 23568887773 333455666777888999999999965 99999999999998888776543
No 98
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.54 E-value=2.8e-14 Score=157.46 Aligned_cols=225 Identities=21% Similarity=0.211 Sum_probs=144.4
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------cceeeee
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNI 280 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~~~~i~v 280 (496)
+...-+.|.|.++..++|..++...+... .+.+.++|+|+||||||++++.+.+++ ...+++|
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgs-------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI 822 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQS-------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI 822 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcC-------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 33344689999999999999886554321 122345799999999999999998876 2567899
Q ss_pred ecccccccc----------------cC-ChHHHHHHHHHHhhh--cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhh
Q 010975 281 SASSVVSKW----------------RG-DSEKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 341 (496)
Q Consensus 281 ~~s~l~~~~----------------~G-~~e~~l~~lf~~a~~--~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~L 341 (496)
+|..+...+ .| .....+..+|..... ....||+|||||.|.... . ..|
T Consensus 823 NCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----------Q---DVL 889 (1164)
T PTZ00112 823 NGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----------Q---KVL 889 (1164)
T ss_pred eCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------H---HHH
Confidence 985543221 01 123455566665422 234699999999996431 1 223
Q ss_pred hhhccCccccCcEEEEEeccCCc---ccccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccC
Q 010975 342 LIQMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG 417 (496)
Q Consensus 342 l~~ld~~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g 417 (496)
+..++........+.||+++|.. +.+++.+++||.. .+.|++|+.+++.+|++..+.... . -
T Consensus 890 YnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~---g-----------V 955 (1164)
T PTZ00112 890 FTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK---E-----------I 955 (1164)
T ss_pred HHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC---C-----------C
Confidence 33333222345568889999864 5678889998864 488999999999999999886421 0 1
Q ss_pred CcCCchhhcchhhh--ccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975 418 YSGSDIRLVSKEAA--MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 475 (496)
Q Consensus 418 ~s~~dI~~l~~~A~--~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps 475 (496)
+....|..+++.++ .+.+|+++..++...++.. ...|+.+|+.+|+.++..+
T Consensus 956 LdDdAIELIArkVAq~SGDARKALDILRrAgEike------gskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 956 IDHTAIQLCARKVANVSGDIRKALQICRKAFENKR------GQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC------CCccCHHHHHHHHHHHHhh
Confidence 22222333333222 3566777766665544321 1258999999998876433
No 99
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.53 E-value=1.3e-14 Score=152.77 Aligned_cols=132 Identities=26% Similarity=0.381 Sum_probs=89.4
Q ss_pred hhhcchHHHHHHhhhhcccccCcccc----ccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccC
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYF----TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG 291 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~----~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G 291 (496)
.|+|++++|+.|...+..+.+.-... .....+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 38999999999987764332211110 011224478999999999999999999999999999999988764 5777
Q ss_pred ChH-HHHHHHHHHh----hhcCCcceehhhHHHHHhhhcCCcchhHHh-hhhhhhhhhhccCc
Q 010975 292 DSE-KLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGL 348 (496)
Q Consensus 292 ~~e-~~l~~lf~~a----~~~~p~ILfIDEID~L~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~ 348 (496)
... ..+..++..+ ....++||||||||.+...........+.+ ..++..||..|++.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGT 214 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcC
Confidence 643 3344444432 234568999999999986632211111111 24677888888753
No 100
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.53 E-value=3.2e-14 Score=147.04 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=117.3
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|++++|++++++.|.+.+... ..++.+||+||||+|||++|+++++.+...
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 456778889999999999999999887532 123578999999999999999999987432
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
++.++... ......++.+++.+... ...|++|||+|.+... .
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~-------------~ 133 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS-------------A 133 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH-------------H
Confidence 22222211 11233456666665432 2359999999987321 2
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
.+.|+..++. .+..+++|.+|++++.+.+++++|+.. +.++.|+.++...+++.++...+.
T Consensus 134 ~~~Ll~~le~---~~~~~~lIl~~~~~~~l~~~l~sr~~~-~~~~~~~~~~l~~~l~~~~~~~g~ 194 (355)
T TIGR02397 134 FNALLKTLEE---PPEHVVFILATTEPHKIPATILSRCQR-FDFKRIPLEDIVERLKKILDKEGI 194 (355)
T ss_pred HHHHHHHHhC---CccceeEEEEeCCHHHHHHHHHhheeE-EEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3557777763 334466667778888888999999954 899999999999999988866543
No 101
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3e-14 Score=157.58 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=120.3
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeee---ee
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN---IS 281 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~---v~ 281 (496)
-+.+++++.+|++++|++.+++.|...+... ..++.+||+||+|+|||++|+++|+.+.+.-.. -.
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 3567889999999999999999999988542 123568999999999999999999988553110 01
Q ss_pred cccc---cc---c---ccC---ChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975 282 ASSV---VS---K---WRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 345 (496)
Q Consensus 282 ~s~l---~~---~---~~G---~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l 345 (496)
|... .+ . ..+ .....++.+.+.+.. ....|++|||+|.|... ..+.|+..|
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------------A~NALLKtL 142 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------------AFNALLKTL 142 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------HHHHHHHHh
Confidence 1000 00 0 001 123446676666653 23459999999987422 346788888
Q ss_pred cCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 346 DGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 346 d~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
+. .+..+++|.+|+.++.+.+++++|+.. +.|..++.++....++..+...+.
T Consensus 143 EE---PP~~tifILaTte~~KLl~TI~SRcq~-ieF~~L~~eeI~~~L~~il~kegI 195 (725)
T PRK07133 143 EE---PPKHVIFILATTEVHKIPLTILSRVQR-FNFRRISEDEIVSRLEFILEKENI 195 (725)
T ss_pred hc---CCCceEEEEEcCChhhhhHHHHhhcee-EEccCCCHHHHHHHHHHHHHHcCC
Confidence 73 344566666778888999999999964 999999999999988887765443
No 102
>PRK06893 DNA replication initiation factor; Validated
Probab=99.52 E-value=3.5e-14 Score=138.74 Aligned_cols=132 Identities=16% Similarity=0.223 Sum_probs=86.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 326 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~ 326 (496)
..++|+||||||||+|++++|+++ +....+++..... .....+++... +..+|+|||++.+.++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 358999999999999999999987 3344444443211 11112333332 34799999999985431
Q ss_pred CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc---HHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 327 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 327 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld---~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
.....++..++.....+..++|++++..|..++ +.+++|+. ..+.++.|+.+++.+|++..+....
T Consensus 108 ---------~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 ---------EWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ---------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 111234454544333444455666666676544 89999875 5688999999999999998876544
Q ss_pred C
Q 010975 402 G 402 (496)
Q Consensus 402 ~ 402 (496)
.
T Consensus 179 l 179 (229)
T PRK06893 179 I 179 (229)
T ss_pred C
Confidence 3
No 103
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.52 E-value=6.6e-14 Score=145.40 Aligned_cols=170 Identities=22% Similarity=0.251 Sum_probs=115.1
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---------ceeeeee
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNIS 281 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---------~~~i~v~ 281 (496)
+....++++|.++.++.|...+...... ..+.+++|+||||||||++++.+++++. ..+++++
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 3444568999999999999988543221 2235799999999999999999998763 5688888
Q ss_pred ccccccc----------c---------cC-ChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhh
Q 010975 282 ASSVVSK----------W---------RG-DSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 340 (496)
Q Consensus 282 ~s~l~~~----------~---------~G-~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~ 340 (496)
|....+. . .+ ........+++.... .++.||+|||+|.+.... ..++..
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----------~~~L~~ 151 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----------DDLLYQ 151 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----------cHHHHh
Confidence 8654321 1 01 112233444444432 345799999999996221 112334
Q ss_pred hhhhccCccccCcEEEEEeccCCcc---cccHHHHHHhh-hhhcccCCCHHHHHHHHHhhCC
Q 010975 341 LLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 341 Ll~~ld~~~~~~~~viVIatTn~p~---~Ld~aL~rRf~-~~I~~~~P~~eeR~~Il~~~l~ 398 (496)
|+...+........+.+|+++|.++ .+++.+.+||. ..+.+++++.++..+|++..+.
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 4443221222335678888888885 57888888885 5689999999999999998875
No 104
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.2e-14 Score=154.49 Aligned_cols=162 Identities=18% Similarity=0.190 Sum_probs=115.7
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|+|++|++.+++.|...+.... .++.+||+||||+|||++|+++|+.++..
T Consensus 6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~-----------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~ 74 (563)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIESNK-----------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG 74 (563)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence 4567889999999999999999999885421 23569999999999999999999998642
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
++.+++.. ...-..++.+.+.+. .....|++|||+|.|.. ..
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-------------~a 135 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-------------SA 135 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-------------HH
Confidence 11111110 011234455544333 23346999999998832 23
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
.+.|+..++. .+..+++|.+|+.+..+.+++++|+.. +.|..++.++...+++..+....
T Consensus 136 ~naLLK~LEe---pp~~~vfI~~tte~~kL~~tI~SRc~~-~~f~~l~~~el~~~L~~i~~~eg 195 (563)
T PRK06647 136 FNALLKTIEE---PPPYIVFIFATTEVHKLPATIKSRCQH-FNFRLLSLEKIYNMLKKVCLEDQ 195 (563)
T ss_pred HHHHHHhhcc---CCCCEEEEEecCChHHhHHHHHHhceE-EEecCCCHHHHHHHHHHHHHHcC
Confidence 4667777773 334456666777788899999999975 89999999999988888775543
No 105
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.51 E-value=2.2e-14 Score=153.56 Aligned_cols=183 Identities=16% Similarity=0.305 Sum_probs=114.2
Q ss_pred CCCccch-hhcchH--HHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeec
Q 010975 211 PDVKWES-IKGLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 282 (496)
Q Consensus 211 ~~~~l~d-liG~e~--vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~ 282 (496)
+..+|++ ++|... +...+.++...+- ...+.++|+||||+|||+|++++++++ +..++++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~~----------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENPG----------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCcC----------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 4556887 445332 4444444433221 123579999999999999999999988 566888888
Q ss_pred ccccccccCChHH-HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975 283 SSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 361 (496)
Q Consensus 283 s~l~~~~~G~~e~-~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT 361 (496)
.++...+...... ....+.+..+ .+.+|+|||+|.+.++.. ....++..++.....+. .+|+++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~l~~~~~-~iiits~ 252 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKER-----------TQEEFFHTFNALHEAGK-QIVLTSD 252 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC-cEEEECC
Confidence 8776554332221 1112222222 457999999999854311 12334444444333333 3455555
Q ss_pred CCccc---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccC
Q 010975 362 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEG 417 (496)
Q Consensus 362 n~p~~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g 417 (496)
..|.. +++++++||. ..+.+..|+.++|..|++..+...... .+..++.+++...|
T Consensus 253 ~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~ 314 (450)
T PRK00149 253 RPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS 314 (450)
T ss_pred CCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC
Confidence 56544 7789999996 468899999999999999998764433 22224445555443
No 106
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.51 E-value=2.7e-14 Score=152.54 Aligned_cols=173 Identities=18% Similarity=0.220 Sum_probs=129.3
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee--e----
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--F---- 278 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~--i---- 278 (496)
.+.+++++.+|+|++|++.+.+.|...+.... ..++.||.||.|||||++||.+|+.+++.- .
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~r-----------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC 73 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGR-----------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPC 73 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHHhCc-----------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcc
Confidence 45678899999999999999999999886533 235799999999999999999999996542 1
Q ss_pred -------eeecccccc--cccC---ChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhh
Q 010975 279 -------NISASSVVS--KWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 342 (496)
Q Consensus 279 -------~v~~s~l~~--~~~G---~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll 342 (496)
.++.+...+ ++.+ ..-..+|.+.+++.. .++.|++|||+|.|. ....++||
T Consensus 74 ~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALL 140 (515)
T COG2812 74 GKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALL 140 (515)
T ss_pred hhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHh
Confidence 111110100 0111 123445666666543 345699999998874 44668888
Q ss_pred hhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCC
Q 010975 343 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES 405 (496)
Q Consensus 343 ~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~ 405 (496)
+.++ ..+..|.+|.+|..+..++..+++|+.+ +.|..-+.++....+..++.+.....+
T Consensus 141 KTLE---EPP~hV~FIlATTe~~Kip~TIlSRcq~-f~fkri~~~~I~~~L~~i~~~E~I~~e 199 (515)
T COG2812 141 KTLE---EPPSHVKFILATTEPQKIPNTILSRCQR-FDFKRLDLEEIAKHLAAILDKEGINIE 199 (515)
T ss_pred cccc---cCccCeEEEEecCCcCcCchhhhhcccc-ccccCCCHHHHHHHHHHHHHhcCCccC
Confidence 8887 5666788888999999999999999976 899899999999999999887766533
No 107
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.50 E-value=7.9e-14 Score=141.71 Aligned_cols=167 Identities=23% Similarity=0.192 Sum_probs=111.3
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-----ceeee
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN 279 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-----~~~i~ 279 (496)
.|.+++.+.+|+|++|.+++++.+...+.... ..+++|+||||||||++++++++++. ..++.
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~------------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKN------------MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCC------------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 36778888999999999999999998874321 13689999999999999999999873 23445
Q ss_pred eecccccccccCChHHHHHHHHHHh-hh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975 280 ISASSVVSKWRGDSEKLIKVLFELA-RH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 357 (496)
Q Consensus 280 v~~s~l~~~~~G~~e~~l~~lf~~a-~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 357 (496)
+++++..+. ......+....... .. ..+.+|+|||+|.+... ..+.|+..++.... ...+
T Consensus 74 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~~---~~~l 135 (319)
T PRK00440 74 LNASDERGI--DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEMYSQ---NTRF 135 (319)
T ss_pred eccccccch--HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhcCCC---CCeE
Confidence 544332110 00111222221111 01 22459999999887422 12345555553322 2345
Q ss_pred EeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 358 IatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
|.++|.+..+.+++.+|+.. +.++.++.++...+++.++.....
T Consensus 136 Il~~~~~~~l~~~l~sr~~~-~~~~~l~~~ei~~~l~~~~~~~~~ 179 (319)
T PRK00440 136 ILSCNYSSKIIDPIQSRCAV-FRFSPLKKEAVAERLRYIAENEGI 179 (319)
T ss_pred EEEeCCccccchhHHHHhhe-eeeCCCCHHHHHHHHHHHHHHcCC
Confidence 55677777788889999975 899999999999999988865543
No 108
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.50 E-value=2.8e-14 Score=148.56 Aligned_cols=245 Identities=25% Similarity=0.350 Sum_probs=160.3
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccC-C
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D 292 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G-~ 292 (496)
.|+|++++|+.+...+....+...+.... -..++++||+||||||||++|+++|+.++.+|+.++++.+.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 49999999999998885532222221111 112478999999999999999999999999999999988775 6777 4
Q ss_pred hHHHHHHHHHHhh-------------------------------------------------------------------
Q 010975 293 SEKLIKVLFELAR------------------------------------------------------------------- 305 (496)
Q Consensus 293 ~e~~l~~lf~~a~------------------------------------------------------------------- 305 (496)
.+..++.+++.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4555666555550
Q ss_pred -----------------------------------------------------------------------hcCCcceeh
Q 010975 306 -----------------------------------------------------------------------HHAPSTIFL 314 (496)
Q Consensus 306 -----------------------------------------------------------------------~~~p~ILfI 314 (496)
..+.+|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred hhHHHHHhhhcCCcchhHHhh-hhhhhhhhhccCccc-------cCcEEEEEecc----CCcccccHHHHHHhhhhhccc
Q 010975 315 DEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILVP 382 (496)
Q Consensus 315 DEID~L~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~~-------~~~~viVIatT----n~p~~Ld~aL~rRf~~~I~~~ 382 (496)
||||+++...+.. ..+++. -++..||..++|-.. ...++++||+- ..|.++-|.|..||..++.+.
T Consensus 256 DEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 9999998764321 223333 478889999987432 23457777764 456667889999999999999
Q ss_pred CCCHHHHHHHHHh----hCCCCCC---CCCCCcceeeecccCCcCCchhhcchhhhcc-------HHHHHHHHhhcc---
Q 010975 383 LPDTEARRAMFES----LLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAMQ-------PLRRLMVLLEGR--- 445 (496)
Q Consensus 383 ~P~~eeR~~Il~~----~l~~~~~---~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~-------a~rR~~~~le~~--- 445 (496)
.++.++..+||.. +++++.. ..++++. |+...++.+++.|... -.|++...+|..
T Consensus 334 ~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~--------Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d 405 (443)
T PRK05201 334 ALTEEDFVRILTEPKASLIKQYQALLATEGVTLE--------FTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 405 (443)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEE--------EcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 9999999998843 2222211 1122221 5666777777777642 235554444432
Q ss_pred -ccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975 446 -QEVAPDDELPQIGPIRPEDVEIALKNT 472 (496)
Q Consensus 446 -~~i~~~~~~~~~~~It~eDf~~Al~~~ 472 (496)
....+... .....|+.+-+...+..+
T Consensus 406 ~~Fe~p~~~-~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 406 ISFEAPDMS-GETVTIDAAYVDEKLGDL 432 (443)
T ss_pred HhccCCCCC-CCEEEECHHHHHHHHHHH
Confidence 22233322 122446777666555543
No 109
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1e-13 Score=148.05 Aligned_cols=162 Identities=20% Similarity=0.214 Sum_probs=114.1
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++++.+|+|++|++.+++.|...+... ..++++||+||||+|||++|+++|+.+...
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 345678889999999999999999888542 123579999999999999999999988432
Q ss_pred ----------------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975 277 ----------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRR 336 (496)
Q Consensus 277 ----------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~ 336 (496)
++.+++.. .. .-..++.+.+... .....|++|||+|.+...
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~----~~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~------------- 136 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGAS----HR--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE------------- 136 (451)
T ss_pred cccHHHHHHhcCCCCceEEeeccc----cC--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------
Confidence 22222111 01 1123333333222 134579999999988422
Q ss_pred hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
..+.|+..++. .+..+++|.+|+.+..+.+++++|+.. +.+..++.++....++..+...+
T Consensus 137 ~~n~LLk~lEe---p~~~~~~Il~t~~~~kl~~tI~sRc~~-v~f~~l~~~el~~~L~~~~~~eg 197 (451)
T PRK06305 137 AFNSLLKTLEE---PPQHVKFFLATTEIHKIPGTILSRCQK-MHLKRIPEETIIDKLALIAKQEG 197 (451)
T ss_pred HHHHHHHHhhc---CCCCceEEEEeCChHhcchHHHHhceE-EeCCCCCHHHHHHHHHHHHHHcC
Confidence 24567888874 233456666778888899999999965 99999999999988888776543
No 110
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.49 E-value=9.9e-14 Score=144.38 Aligned_cols=245 Identities=26% Similarity=0.333 Sum_probs=159.8
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccC-C
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D 292 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G-~ 292 (496)
-++|++++|+.+...+....++..+...+ -.+++++||+||||||||++|+++|..++.+|+.++++.+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 49999999999988886543322221111 224589999999999999999999999999999999987764 6777 4
Q ss_pred hHHHHHHHHHHh--------------------------------------------------------------------
Q 010975 293 SEKLIKVLFELA-------------------------------------------------------------------- 304 (496)
Q Consensus 293 ~e~~l~~lf~~a-------------------------------------------------------------------- 304 (496)
.+..++.+++.+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 556666555544
Q ss_pred -----------------------------------------------------------------------hhcCCccee
Q 010975 305 -----------------------------------------------------------------------RHHAPSTIF 313 (496)
Q Consensus 305 -----------------------------------------------------------------------~~~~p~ILf 313 (496)
...+.+|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 001346999
Q ss_pred hhhHHHHHhhhcCCcchhHHhh-hhhhhhhhhccCccc-------cCcEEEEEecc----CCcccccHHHHHHhhhhhcc
Q 010975 314 LDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILV 381 (496)
Q Consensus 314 IDEID~L~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~~-------~~~~viVIatT----n~p~~Ld~aL~rRf~~~I~~ 381 (496)
|||||+++..... ...+++. -++..||..++|-.. ...++++||+. ..|.++-|.|.-||..++.+
T Consensus 253 iDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEEC
Confidence 9999999876421 1223333 478889999987432 23457777765 35666788999999999999
Q ss_pred cCCCHHHHHHHHHh----hCCCCCC---CCCCCcceeeecccCCcCCchhhcchhhhc-------cHHHHHHHHhhcc--
Q 010975 382 PLPDTEARRAMFES----LLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAM-------QPLRRLMVLLEGR-- 445 (496)
Q Consensus 382 ~~P~~eeR~~Il~~----~l~~~~~---~~~~~l~~la~~t~g~s~~dI~~l~~~A~~-------~a~rR~~~~le~~-- 445 (496)
..++.++..+||.. +++++.. ..++++. |+...++.+++.|.. .-+|++...++..
T Consensus 331 ~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~--------Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~ 402 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSLIKQYKALMKTEGVNIE--------FSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLE 402 (441)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEE--------EeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 99999999988742 2221110 1122221 555677777777764 1234544444322
Q ss_pred --ccCCCCCCCCCCCCCCchhHHHHhhcC
Q 010975 446 --QEVAPDDELPQIGPIRPEDVEIALKNT 472 (496)
Q Consensus 446 --~~i~~~~~~~~~~~It~eDf~~Al~~~ 472 (496)
....+... .....|+.+.+...+..+
T Consensus 403 d~~fe~p~~~-~~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 403 DISFEAPDLS-GQNITIDADYVSKKLGAL 430 (441)
T ss_pred HHHhcCCCCC-CCEEEECHHHHHhHHHHH
Confidence 22333322 223457777776666554
No 111
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.49 E-value=1.3e-13 Score=135.16 Aligned_cols=157 Identities=14% Similarity=0.161 Sum_probs=96.5
Q ss_pred CCCccchhh-c-chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecccc
Q 010975 211 PDVKWESIK-G-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 285 (496)
Q Consensus 211 ~~~~l~dli-G-~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l 285 (496)
+..+|++.+ | ...+...+.+....+ ...+++|+||||||||+|++++++++. ..+.+++....
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~~------------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQE------------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 445577755 4 455666666554221 125799999999999999999999774 34555554432
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~ 365 (496)
.. ....+.+.... ..+|+|||++.+.++. .....|+..++.....+...+++++++.|.
T Consensus 85 ~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~-----------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~ 143 (235)
T PRK08084 85 AW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE-----------LWEMAIFDLYNRILESGRTRLLITGDRPPR 143 (235)
T ss_pred hh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH-----------HHHHHHHHHHHHHHHcCCCeEEEeCCCChH
Confidence 11 11122222222 2589999999985431 111223333332222333234555666665
Q ss_pred c---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCC
Q 010975 366 E---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 366 ~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
. +.+.|++|+. .++.+..|+.+++.++++..+...
T Consensus 144 ~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 144 QLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred HcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 4 6799999995 668899999999999998866544
No 112
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.4e-13 Score=144.99 Aligned_cols=167 Identities=18% Similarity=0.203 Sum_probs=111.6
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceee-------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF------- 278 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i------- 278 (496)
+.+++++.+|++++|++.+++.|...+... ..++++||+||||+|||++|+++|+.+...-.
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 456778899999999999999998877532 12356999999999999999999999865210
Q ss_pred ---eeeccc------cc-------ccccC---ChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhh
Q 010975 279 ---NISASS------VV-------SKWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASR 335 (496)
Q Consensus 279 ---~v~~s~------l~-------~~~~G---~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~ 335 (496)
.-.|.. +. ..+.+ .....++.+.+.+.. ....|++|||+|.+...
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------------ 142 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------------ 142 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH------------
Confidence 001100 00 00111 112445555554432 12359999999988422
Q ss_pred hhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975 336 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 336 ~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
..+.|+..++. .+...++|.+|+.+..+.+++++|+. .+.+..++.++....++..+...
T Consensus 143 -~~~~LLk~LEe---p~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~ 202 (397)
T PRK14955 143 -AFNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAE 202 (397)
T ss_pred -HHHHHHHHHhc---CCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHc
Confidence 23456666662 22334445555667788899999996 49999999999888888877544
No 113
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.48 E-value=5.2e-14 Score=136.76 Aligned_cols=166 Identities=22% Similarity=0.285 Sum_probs=121.2
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 285 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l 285 (496)
....+.+++++|.+..|+.|.+.....+. ..+.+++||+|++|||||++++++..++ |.++++|...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 34567799999999999999988755443 2356899999999999999999999987 788999887776
Q ss_pred cccccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC-ccccCcEEEEEeccCC
Q 010975 286 VSKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNL 363 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~-~~~~~~~viVIatTn~ 363 (496)
. .+..+++..+. ..+-|||+|++. + ... ..-...|-..||| +...+.+|+|.||+|+
T Consensus 92 ~---------~l~~l~~~l~~~~~kFIlf~DDLs-F----e~~-------d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 92 G---------DLPELLDLLRDRPYKFILFCDDLS-F----EEG-------DTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred c---------cHHHHHHHHhcCCCCEEEEecCCC-C----CCC-------cHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 3 23344444432 233599999873 1 111 1112345555554 4577889999999996
Q ss_pred ccccc---------------------H--HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975 364 PWELD---------------------A--AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 403 (496)
Q Consensus 364 p~~Ld---------------------~--aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~ 403 (496)
-..++ + +|.+||...+.|..|+.++-.+|+++++......
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 53211 1 4566999999999999999999999999776654
No 114
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.48 E-value=7.1e-14 Score=135.28 Aligned_cols=204 Identities=16% Similarity=0.198 Sum_probs=121.9
Q ss_pred Cccchhh--cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc
Q 010975 213 VKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 287 (496)
Q Consensus 213 ~~l~dli--G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~ 287 (496)
.+|++++ +.+.+.+.+.+++.. ..+.+++|+||||||||++|+++++++ +.+++.+++..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 4466665 456677777776531 123689999999999999999999987 46788888877753
Q ss_pred cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975 288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 367 (496)
Q Consensus 288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L 367 (496)
.. ..++.... .+.+|+|||+|.+.... .....+...++.....+. .+|++++..+..+
T Consensus 80 ~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-----------~~~~~L~~~l~~~~~~~~-~iIits~~~~~~~ 137 (226)
T TIGR03420 80 AD--------PEVLEGLE--QADLVCLDDVEAIAGQP-----------EWQEALFHLYNRVREAGG-RLLIAGRAAPAQL 137 (226)
T ss_pred hH--------HHHHhhcc--cCCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHHHcCC-eEEEECCCChHHC
Confidence 21 22333222 23699999999884321 011233333332222222 3344444444333
Q ss_pred --c-HHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975 368 --D-AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 368 --d-~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
. +.+.+|+. ..+.+++|+.+++..+++.++...... ++...+..+.+ .+.++++.+.+.+
T Consensus 138 ~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--------------~~~~~l~~L~~-~~~gn~r~L~~~l 202 (226)
T TIGR03420 138 PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--------------LPDEVADYLLR-HGSRDMGSLMALL 202 (226)
T ss_pred CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHH-hccCCHHHHHHHH
Confidence 2 78888884 678899999999999998765433211 33344444444 4666666666555
Q ss_pred hccccCCCCCCCCCCCCCCchhHHHHh
Q 010975 443 EGRQEVAPDDELPQIGPIRPEDVEIAL 469 (496)
Q Consensus 443 e~~~~i~~~~~~~~~~~It~eDf~~Al 469 (496)
+.....+.. ....||.+.+.+++
T Consensus 203 ~~~~~~~~~----~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 203 DALDRASLA----AKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHH----hCCCCCHHHHHHHh
Confidence 433321111 11346776666654
No 115
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=6.9e-14 Score=150.95 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=115.7
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc----------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 275 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---------- 275 (496)
+.+++++.+|++++|++.+++.|...+... ..++.+||+||+|+|||++|+++|+.+..
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 456788999999999999999999987432 12356799999999999999999998732
Q ss_pred --------------eeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 276 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 276 --------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
.++.+++++- ..-..++.+...... ....|++|||+|.|.. ..
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-------------~A 133 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-------------EA 133 (535)
T ss_pred ccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HH
Confidence 1222222110 012445555544321 1235999999988732 33
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
.+.|+..++.. +..+.+|.+|+.+..+.+++++|+. .+.|..++.++....++..+...+.
T Consensus 134 ~NALLK~LEEp---p~~t~FIL~ttd~~kL~~tI~SRc~-~~~F~~Ls~~ei~~~L~~Il~~EGi 194 (535)
T PRK08451 134 FNALLKTLEEP---PSYVKFILATTDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTILEKEGV 194 (535)
T ss_pred HHHHHHHHhhc---CCceEEEEEECChhhCchHHHhhce-eEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46788888743 3345566666778899999999985 5999999999999888888766543
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1e-13 Score=144.50 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=115.7
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec---
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--- 282 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~--- 282 (496)
+.+++++.+|+|++|++.+++.+...+... ..++++|||||||+|||++|+++++.++.+.....+
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 456788999999999999999999988542 123689999999999999999999988542211110
Q ss_pred ----ccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcE
Q 010975 283 ----SSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 354 (496)
Q Consensus 283 ----s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 354 (496)
-++ ..........++.+++.+.. ..+.|++|||+|.+... ..+.++..++. .+..
T Consensus 76 ~~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-------------~~~~ll~~le~---~~~~ 138 (367)
T PRK14970 76 SFNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-------------AFNAFLKTLEE---PPAH 138 (367)
T ss_pred CcceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-------------HHHHHHHHHhC---CCCc
Confidence 001 00011223556666665542 23469999999987422 23556666653 2233
Q ss_pred EEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 355 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 355 viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
.++|.+++.+..+.+++.+|+.. +.++.|+.++...++...+...+.
T Consensus 139 ~~~Il~~~~~~kl~~~l~sr~~~-v~~~~~~~~~l~~~l~~~~~~~g~ 185 (367)
T PRK14970 139 AIFILATTEKHKIIPTILSRCQI-FDFKRITIKDIKEHLAGIAVKEGI 185 (367)
T ss_pred eEEEEEeCCcccCCHHHHhccee-EecCCccHHHHHHHHHHHHHHcCC
Confidence 44555667778889999999965 899999999999888887765544
No 117
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.3e-13 Score=148.39 Aligned_cols=164 Identities=19% Similarity=0.250 Sum_probs=114.4
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce--------
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------- 276 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-------- 276 (496)
.+.+++++.+|++++|++.+++.|...+... ..++.+||+||||+|||++|+.+|+.++..
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 3567788899999999999999999888542 123468899999999999999999988531
Q ss_pred ----------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975 277 ----------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR 336 (496)
Q Consensus 277 ----------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~ 336 (496)
++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+...
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~------------- 134 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE------------- 134 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-------------
Confidence 11111110 0112334555444432 23469999999987422
Q ss_pred hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
..+.|+..++.. ... +++|.+|+.++.+.+++.+|+.. +.+..++.++...+++.++...+.
T Consensus 135 a~naLLk~LEep--p~~-~v~Il~tt~~~kl~~tI~SRc~~-i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 135 AFNALLKTLEEP--PPR-TIFILCTTEYDKIPPTILSRCQR-FIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred HHHHHHHHHhcC--CCC-eEEEEEECCHHHHHHHHHHhceE-EEcCCCCHHHHHHHHHHHHHHcCC
Confidence 235677777632 233 44555566778888999999965 999999999999999988876543
No 118
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.48 E-value=9.2e-14 Score=153.67 Aligned_cols=171 Identities=20% Similarity=0.253 Sum_probs=111.4
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------- 273 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---------- 273 (496)
+.+....++.+|++++|++...+.+...+..+ .+.+++|+||||||||++|+++++..
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~ 209 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE 209 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC
Confidence 44455567888999999999999887766332 23579999999999999999998765
Q ss_pred cceeeeeecccccc-------cccCChHH----HHHHHHHH----------hhhcCCcceehhhHHHHHhhhcCCcchhH
Q 010975 274 KTTFFNISASSVVS-------KWRGDSEK----LIKVLFEL----------ARHHAPSTIFLDEIDAIISQRGEARSEHE 332 (496)
Q Consensus 274 ~~~~i~v~~s~l~~-------~~~G~~e~----~l~~lf~~----------a~~~~p~ILfIDEID~L~~~r~~~~~~~~ 332 (496)
+.+|+.+++..+.. .+.|.... ..+..+.. ......++|||||++.|....+
T Consensus 210 ~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q------- 282 (615)
T TIGR02903 210 DAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ------- 282 (615)
T ss_pred CCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-------
Confidence 35789998876521 11111100 01111111 0112347999999988744321
Q ss_pred HhhhhhhhhhhhccCc--------------------------cccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCH
Q 010975 333 ASRRLKTELLIQMDGL--------------------------TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 386 (496)
Q Consensus 333 ~~~~i~~~Ll~~ld~~--------------------------~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~ 386 (496)
..|+..++.- ......+++.+||+.++.+++++++||.. +.+++++.
T Consensus 283 ------~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~-i~~~pls~ 355 (615)
T TIGR02903 283 ------NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAE-VFFEPLTP 355 (615)
T ss_pred ------HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeE-EEeCCCCH
Confidence 1222222110 01122355556677888899999999975 78899999
Q ss_pred HHHHHHHHhhCCCC
Q 010975 387 EARRAMFESLLPSQ 400 (496)
Q Consensus 387 eeR~~Il~~~l~~~ 400 (496)
++...|++..+...
T Consensus 356 edi~~Il~~~a~~~ 369 (615)
T TIGR02903 356 EDIALIVLNAAEKI 369 (615)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999987653
No 119
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.47 E-value=4.9e-14 Score=148.91 Aligned_cols=155 Identities=19% Similarity=0.329 Sum_probs=100.1
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChHH-HHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIIS 322 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e~-~l~~lf~~a~~~~p~ILfIDEID~L~~ 322 (496)
.+.++|+||||+|||+|++++++++ +..++++++.++...+...... ....+.+..+ .+.+|+|||+|.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3579999999999999999999987 5678888887765443322111 1112222222 247999999999854
Q ss_pred hhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc---ccHHHHHHhhh--hhcccCCCHHHHHHHHHhhC
Q 010975 323 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLEK--RILVPLPDTEARRAMFESLL 397 (496)
Q Consensus 323 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~---Ld~aL~rRf~~--~I~~~~P~~eeR~~Il~~~l 397 (496)
.. .....++..++.....+. .+|++++..|.. +++.+++||.. .+.++.|+.++|..|++..+
T Consensus 214 ~~-----------~~~~~l~~~~n~~~~~~~-~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 214 KE-----------RTQEEFFHTFNALHENGK-QIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred CH-----------HHHHHHHHHHHHHHHCCC-CEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 31 112334444443323333 345555555643 66889999964 68999999999999999998
Q ss_pred CCCCCCC-CCCcceeeecccC
Q 010975 398 PSQTGEE-SLPYDLLVERTEG 417 (496)
Q Consensus 398 ~~~~~~~-~~~l~~la~~t~g 417 (496)
....... +..++.+++...+
T Consensus 282 ~~~~~~l~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 282 EEEGLELPDEVLEFIAKNIRS 302 (405)
T ss_pred HHcCCCCCHHHHHHHHHhcCC
Confidence 7755442 2224445655543
No 120
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.47 E-value=1.3e-13 Score=144.75 Aligned_cols=168 Identities=20% Similarity=0.250 Sum_probs=112.5
Q ss_pred CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeeccccc
Q 010975 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVV 286 (496)
Q Consensus 212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~ 286 (496)
....+.++|.++..++|...+...... ..+.+++|+||||||||++++.+++++ +..++++++....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 334567999999999998887543221 123579999999999999999999987 4678888886432
Q ss_pred cc----------cc-------C-ChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC
Q 010975 287 SK----------WR-------G-DSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 347 (496)
Q Consensus 287 ~~----------~~-------G-~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 347 (496)
+. .. + .....+..+.+.... ..+.||+|||+|.+..... ...+..|+..++.
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~~ 168 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHEE 168 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhhc
Confidence 21 11 1 122333444443332 3457999999999972111 1233445554443
Q ss_pred ccccCcEEEEEeccCCc---ccccHHHHHHhh-hhhcccCCCHHHHHHHHHhhCC
Q 010975 348 LTQSDELVFVLAATNLP---WELDAAMLRRLE-KRILVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 348 ~~~~~~~viVIatTn~p---~~Ld~aL~rRf~-~~I~~~~P~~eeR~~Il~~~l~ 398 (496)
.. ..++.+|+++|.+ +.+++.+.+||. ..+.+++++.++..+|++..+.
T Consensus 169 ~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 169 YP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred cC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 32 2357777777766 347788888874 4689999999999999998874
No 121
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2.2e-13 Score=149.58 Aligned_cols=171 Identities=17% Similarity=0.151 Sum_probs=119.5
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee--
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS-- 281 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~-- 281 (496)
+-+.+++.+.+|+||+|++.+++.|...+... ..++++||+||+|+|||++|+.+|+.+++.....+
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~ 80 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGG 80 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCC
Confidence 34566788899999999999999999987542 23467999999999999999999999865321111
Q ss_pred -----------cc--------cccccc--cCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975 282 -----------AS--------SVVSKW--RGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRR 336 (496)
Q Consensus 282 -----------~s--------~l~~~~--~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~~~~~ 336 (496)
|. ++..-. ....-..++.+++.+... ...|++|||+|.|.. .
T Consensus 81 ~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-------------~ 147 (598)
T PRK09111 81 PTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-------------A 147 (598)
T ss_pred CccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-------------H
Confidence 00 000000 001234566666655432 346999999998842 2
Q ss_pred hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
..+.|++.|+. .+..+.+|.+|+.++.+.+.+++|+.. +.|..++.++....++..+.....
T Consensus 148 a~naLLKtLEe---Pp~~~~fIl~tte~~kll~tI~SRcq~-~~f~~l~~~el~~~L~~i~~kegi 209 (598)
T PRK09111 148 AFNALLKTLEE---PPPHVKFIFATTEIRKVPVTVLSRCQR-FDLRRIEADVLAAHLSRIAAKEGV 209 (598)
T ss_pred HHHHHHHHHHh---CCCCeEEEEEeCChhhhhHHHHhheeE-EEecCCCHHHHHHHHHHHHHHcCC
Confidence 34667777763 333455666677777888899999965 999999999999999988765543
No 122
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.45 E-value=1.6e-13 Score=133.58 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=123.5
Q ss_pred CCCccchhh--cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975 211 PDVKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 285 (496)
Q Consensus 211 ~~~~l~dli--G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l 285 (496)
++.+|++++ +.+.+...+.++... .....+++|+||||||||+||++++++. +.+++.+++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 345688866 345566666665431 1233689999999999999999999976 667888887665
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP- 364 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p- 364 (496)
... +. ......+|+|||+|.+... ....|+..++........+++++++..|
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDDA-------------QQIALFNLFNRVRAHGQGALLVAGPAAPL 134 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCch-------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 321 11 1123479999999987321 1133444444333333334444444333
Q ss_pred -ccccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975 365 -WELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 441 (496)
Q Consensus 365 -~~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~ 441 (496)
..+.+.+.+||. ..+.+++|+.+++..+++.+....... ++.+.+..+.+ -+.++++.+.+.
T Consensus 135 ~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--------------l~~~al~~L~~-~~~gn~~~l~~~ 199 (227)
T PRK08903 135 ALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ--------------LADEVPDYLLT-HFRRDMPSLMAL 199 (227)
T ss_pred hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHH-hccCCHHHHHHH
Confidence 235688898984 578999999998888888765443322 23333444444 566666665555
Q ss_pred hhccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975 442 LEGRQEVAPDDELPQIGPIRPEDVEIALK 470 (496)
Q Consensus 442 le~~~~i~~~~~~~~~~~It~eDf~~Al~ 470 (496)
++.-.... ....++||...+++++.
T Consensus 200 l~~l~~~~----~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 200 LDALDRYS----LEQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHH----HHhCCCCCHHHHHHHHh
Confidence 54322111 01124689888888876
No 123
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=9.6e-14 Score=148.01 Aligned_cols=154 Identities=18% Similarity=0.359 Sum_probs=97.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChH-HHHHHHHHHhhhcCCcceehhhHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e-~~l~~lf~~a~~~~p~ILfIDEID~L~~~ 323 (496)
++++||||||+|||+|++++++++ +..++++++.++...+..... ..+.. |......++.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 579999999999999999999986 457888888776654432111 11122 22222235689999999988543
Q ss_pred hcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCC
Q 010975 324 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 324 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~ 398 (496)
.. ....++..++.+...+. .+|+++.+.|.. +.+.+.+||. ..+.+.+|+.++|..|++..+.
T Consensus 210 ~~-----------~q~elf~~~n~l~~~~k-~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG-----------VQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH-----------HHHHHHHHHHHHHHcCC-eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 11 11234444443333333 445555566654 6678889995 3567899999999999999887
Q ss_pred CCCCCC-CCCcceeeeccc
Q 010975 399 SQTGEE-SLPYDLLVERTE 416 (496)
Q Consensus 399 ~~~~~~-~~~l~~la~~t~ 416 (496)
...... +..++.+++...
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~ 296 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVD 296 (440)
T ss_pred hcCCCCCHHHHHHHHhccc
Confidence 544332 122344555444
No 124
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.44 E-value=2.5e-13 Score=142.66 Aligned_cols=179 Identities=25% Similarity=0.364 Sum_probs=117.6
Q ss_pred hhhcchHHHHHHhhhhcccccCccc-----c-ccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cc
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKY-----F-TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KW 289 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~-----~-~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~ 289 (496)
-++|++++++.+...+....+.-.. . ........++||+||||||||++|+++|..++.+|..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 4899999999998776322221110 0 001122468999999999999999999999999999999888753 57
Q ss_pred cCCh-HHHHHHHHHHh----hhcCCcceehhhHHHHHhhhcCCcchhHHh-hhhhhhhhhhccCccc----------cCc
Q 010975 290 RGDS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGLTQ----------SDE 353 (496)
Q Consensus 290 ~G~~-e~~l~~lf~~a----~~~~p~ILfIDEID~L~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~~~----------~~~ 353 (496)
+|.. +..+..++..+ ....++||||||+|++...+.......+++ ..+++.||+.|+|... ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7764 44455544432 234568999999999987543222111111 2467778888875421 123
Q ss_pred EEEEEeccCCcc--------------------------------------------------cccHHHHHHhhhhhcccC
Q 010975 354 LVFVLAATNLPW--------------------------------------------------ELDAAMLRRLEKRILVPL 383 (496)
Q Consensus 354 ~viVIatTn~p~--------------------------------------------------~Ld~aL~rRf~~~I~~~~ 383 (496)
..++|.|+|-.. .+.|+++.|++.++.|.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~p 317 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEK 317 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCC
Confidence 456777777510 023455557788788888
Q ss_pred CCHHHHHHHHHh
Q 010975 384 PDTEARRAMFES 395 (496)
Q Consensus 384 P~~eeR~~Il~~ 395 (496)
.+.++..+|+..
T Consensus 318 L~~~~L~~Il~~ 329 (413)
T TIGR00382 318 LDEEALIAILTK 329 (413)
T ss_pred CCHHHHHHHHHH
Confidence 888888888765
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4.2e-13 Score=147.69 Aligned_cols=168 Identities=16% Similarity=0.185 Sum_probs=113.3
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeee------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN------ 279 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~------ 279 (496)
+.+++++.+|++++|++.+++.|...+... ..++++||+||||||||++|+.+|+.+++.--.
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL 74 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence 345678899999999999999999877432 123569999999999999999999999663100
Q ss_pred ----eeccc------c-----c--ccccCC---hHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhh
Q 010975 280 ----ISASS------V-----V--SKWRGD---SEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASR 335 (496)
Q Consensus 280 ----v~~s~------l-----~--~~~~G~---~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~ 335 (496)
-.|.. + . ..+.+. ....++.+.+.+.. ....|++|||+|.+...
T Consensus 75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~------------ 142 (620)
T PRK14954 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA------------ 142 (620)
T ss_pred cccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH------------
Confidence 01100 0 0 001111 13445555554421 22359999999988422
Q ss_pred hhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 336 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 336 ~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
..+.|+..++. .+..+++|.+|+.+..+.+++++|+.. +.|..++.++....++..+....
T Consensus 143 -a~naLLK~LEe---Pp~~tv~IL~t~~~~kLl~TI~SRc~~-vef~~l~~~ei~~~L~~i~~~eg 203 (620)
T PRK14954 143 -AFNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRCQR-FNFKRIPLDEIQSQLQMICRAEG 203 (620)
T ss_pred -HHHHHHHHHhC---CCCCeEEEEEeCChhhhhHHHHhhceE-EecCCCCHHHHHHHHHHHHHHcC
Confidence 23568888773 223344555556678888999999965 99999999998888887776543
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3.4e-13 Score=148.92 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=117.2
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeee----ee
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN----IS 281 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~----v~ 281 (496)
+..++++..|++++|++.+++.|...+.... ...++||+||||+|||++|+++|+.+++.... -.
T Consensus 6 l~~kyRP~~f~~liGq~~i~~~L~~~l~~~r-----------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALISNR-----------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHHhCCCcHhhccChHHHHHHHHHHHHcCC-----------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 4567788899999999999999999886422 23579999999999999999999998653110 00
Q ss_pred cc--------------ccc--ccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhh
Q 010975 282 AS--------------SVV--SKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 341 (496)
Q Consensus 282 ~s--------------~l~--~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~L 341 (496)
|. ++. .......-..++.+++.+.. ....|++|||+|.|.. ...+.|
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-------------~a~naL 141 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-------------AAFNAL 141 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-------------HHHHHH
Confidence 10 000 01112234567777766643 2235999999998832 234678
Q ss_pred hhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975 342 LIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 342 l~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
+..++. ....+++|++|+++..+.+++++|+.. +.|+.++.++....++.++.+.
T Consensus 142 LK~LEe---Pp~~tvfIL~t~~~~~llpTIrSRc~~-~~f~~l~~~ei~~~L~~ia~ke 196 (620)
T PRK14948 142 LKTLEE---PPPRVVFVLATTDPQRVLPTIISRCQR-FDFRRIPLEAMVQHLSEIAEKE 196 (620)
T ss_pred HHHHhc---CCcCeEEEEEeCChhhhhHHHHhheeE-EEecCCCHHHHHHHHHHHHHHh
Confidence 888873 334455666777888899999999965 8898888888887777766554
No 127
>PRK08727 hypothetical protein; Validated
Probab=99.42 E-value=4.5e-13 Score=131.31 Aligned_cols=130 Identities=23% Similarity=0.262 Sum_probs=84.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 326 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~ 326 (496)
..++|+||+|||||+|++++++++ +..+.+++..++. ..+...++... +..+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 459999999999999999998876 5556666654432 22333444333 346999999998754311
Q ss_pred CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc---ccHHHHHHh--hhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 327 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 327 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~---Ld~aL~rRf--~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
....++..++.....+.. +|+++...|.. +++++++|| ...+.++.|+.+++..+++..+....
T Consensus 111 ----------~~~~lf~l~n~~~~~~~~-vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 ----------DEVALFDFHNRARAAGIT-LLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred ----------HHHHHHHHHHHHHHcCCe-EEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 112333444332222222 34434445554 478999997 45678999999999999998765443
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6e-13 Score=146.74 Aligned_cols=162 Identities=18% Similarity=0.216 Sum_probs=112.9
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee--------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF-------- 277 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~-------- 277 (496)
+.+++.+.+|++++|++++++.|...+.... .++.+||+||||+|||++|+.+|+.+++..
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~-----------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGR-----------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhCC-----------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4577889999999999999999988775421 234689999999999999999999885321
Q ss_pred -----------------eeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhh
Q 010975 278 -----------------FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR 336 (496)
Q Consensus 278 -----------------i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~ 336 (496)
+.++.+. ...-..++.+.+.+.. ....|++|||+|.|.. .
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-------------~ 135 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-------------A 135 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-------------H
Confidence 1111110 1122334554443332 2345999999998742 2
Q ss_pred hhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 337 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 337 i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
..+.|+..++.. ...+++|.+++..+.+.+.+++|+.. +.|..++.++...+++..+....
T Consensus 136 a~naLLk~LEep---p~~tv~Il~t~~~~kll~tI~SR~~~-i~f~~l~~~el~~~L~~~a~~eg 196 (585)
T PRK14950 136 AFNALLKTLEEP---PPHAIFILATTEVHKVPATILSRCQR-FDFHRHSVADMAAHLRKIAAAEG 196 (585)
T ss_pred HHHHHHHHHhcC---CCCeEEEEEeCChhhhhHHHHhccce-eeCCCCCHHHHHHHHHHHHHHcC
Confidence 245677777642 23345555667777788899999965 89999999999988888776544
No 129
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=1.4e-13 Score=146.63 Aligned_cols=140 Identities=18% Similarity=0.286 Sum_probs=91.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 326 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~ 326 (496)
++++||||||+|||+|++++++++ +.++++++..++...+.......-...|.... ..+.+|+|||++.+.+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 679999999999999999999987 67788888776654432211111111233222 2457999999999854311
Q ss_pred CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc---cccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 327 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 327 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~---~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
....++..++.+...+. .+|++++..|. .+++++++||. ..+.+..|+.++|..|++..+....
T Consensus 220 ----------~qeelf~l~N~l~~~~k-~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 220 ----------TQEEFFHTFNSLHTEGK-LIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred ----------hHHHHHHHHHHHHHCCC-cEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 12233333332222222 44555545554 46789999995 6788888999999999999887654
Q ss_pred C
Q 010975 402 G 402 (496)
Q Consensus 402 ~ 402 (496)
.
T Consensus 289 ~ 289 (445)
T PRK12422 289 I 289 (445)
T ss_pred C
Confidence 3
No 130
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=4.6e-13 Score=145.72 Aligned_cols=153 Identities=17% Similarity=0.266 Sum_probs=99.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 324 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r 324 (496)
+.++|||++|+|||+|++++++++ +..++++++.++..++...........|.+. -..+.+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999987 4678899988877655432222111223221 1235799999999886432
Q ss_pred cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-c---cccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCC
Q 010975 325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-~---~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~ 398 (496)
.....|+..++.+...+..+ || |++.+ . .+++.|++||. .++.+..|+.+.|..|++..+.
T Consensus 394 -----------~tqeeLF~l~N~l~e~gk~I-II-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 -----------STQEEFFHTFNTLHNANKQI-VL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred -----------HHHHHHHHHHHHHHhcCCCE-EE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 11233445554443333333 44 55543 3 47889999995 4558888999999999999987
Q ss_pred CCCCCCCC-Ccceeeeccc
Q 010975 399 SQTGEESL-PYDLLVERTE 416 (496)
Q Consensus 399 ~~~~~~~~-~l~~la~~t~ 416 (496)
........ .++.|+.+..
T Consensus 461 ~r~l~l~~eVi~yLa~r~~ 479 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRIS 479 (617)
T ss_pred hcCCCCCHHHHHHHHHhcc
Confidence 76554322 2344555444
No 131
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.39 E-value=5.8e-13 Score=149.68 Aligned_cols=166 Identities=20% Similarity=0.222 Sum_probs=115.4
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-----cccC
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-----KWRG 291 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-----~~~G 291 (496)
.|+|++++++.|.+.+......- .....|..++||+||||||||.+|+++|..++.+++.++++++.. ...|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 48999999999999886432100 000123357999999999999999999999999999999887643 2222
Q ss_pred ChHHH-----HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccCcEEEEE
Q 010975 292 DSEKL-----IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDELVFVL 358 (496)
Q Consensus 292 ~~e~~-----l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~viVI 358 (496)
...+. -..+.+..+....+||||||||++.+. +.+.|+..+|+- ...-.+++||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 21111 112233334455689999999998533 456677666532 1122457788
Q ss_pred eccCCc-------------------------ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCC
Q 010975 359 AATNLP-------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 359 atTn~p-------------------------~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~ 398 (496)
+|||.- ..+.|.++.|++.++.|++.+.++..+|+...+.
T Consensus 603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 999832 1255788889999999999999999999887764
No 132
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.36 E-value=2e-13 Score=142.62 Aligned_cols=208 Identities=24% Similarity=0.254 Sum_probs=145.2
Q ss_pred CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc---
Q 010975 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV--- 285 (496)
Q Consensus 212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l--- 285 (496)
.....++||...+..++.+.+...- .....|||.|.+||||..+||+|++.+ +.||+.+||..+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 4567789999999999988875533 233679999999999999999999988 678999999544
Q ss_pred ------cccccCChHHHHHH---HHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975 286 ------VSKWRGDSEKLIKV---LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 356 (496)
Q Consensus 286 ------~~~~~G~~e~~l~~---lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 356 (496)
++...|.+.+.+.. -|+.|.+ +.||+|||..|...- .....+.+++.-++.+.+-....-.|.
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelPL~l-----QaKLLRvLQegEieRvG~~r~ikVDVR 360 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELPLAL-----QAKLLRVLQEGEIERVGGDRTIKVDVR 360 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCCHHH-----HHHHHHHHhhcceeecCCCceeEEEEE
Confidence 44444555444432 4555554 799999998775442 233445666666666665544455699
Q ss_pred EEeccCCcccccHHHH---------HHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcCCch
Q 010975 357 VLAATNLPWELDAAML---------RRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSDI 423 (496)
Q Consensus 357 VIatTn~p~~Ld~aL~---------rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI 423 (496)
|||+||+. |...++ =|+.. +.+..|...||.+ +.++++.+.... +......++++.+
T Consensus 361 iIAATNRD--L~~~V~~G~FRaDLYyRLsV-~Pl~lPPLRER~~DIplLA~~Fle~~~~~-------~gr~~l~ls~~Al 430 (550)
T COG3604 361 VIAATNRD--LEEMVRDGEFRADLYYRLSV-FPLELPPLRERPEDIPLLAGYFLEKFRRR-------LGRAILSLSAEAL 430 (550)
T ss_pred EEeccchh--HHHHHHcCcchhhhhhcccc-cccCCCCcccCCccHHHHHHHHHHHHHHh-------cCCcccccCHHHH
Confidence 99999985 333333 36654 6777788887765 444444433222 2222445788889
Q ss_pred hhcchhhhccHHHHHHHHhhcccc
Q 010975 424 RLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 424 ~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
+.+.+..|.+++|++.+.+++..-
T Consensus 431 ~~L~~y~wPGNVRELen~veRavl 454 (550)
T COG3604 431 ELLSSYEWPGNVRELENVVERAVL 454 (550)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHH
Confidence 999999999999999988876654
No 133
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.36 E-value=2.1e-12 Score=128.80 Aligned_cols=133 Identities=26% Similarity=0.292 Sum_probs=89.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc------ccccccCChHHH-HHH-------------------HHHH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVSKWRGDSEKL-IKV-------------------LFEL 303 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~------l~~~~~G~~e~~-l~~-------------------lf~~ 303 (496)
.++||+||||||||++|+++|+.+|.+++.+++.. +.+.+.+..... ... .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 68999999999999999999999999999997753 333332211111 111 1111
Q ss_pred hhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc-------------ccCcEEEEEeccCCcc-----
Q 010975 304 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------------QSDELVFVLAATNLPW----- 365 (496)
Q Consensus 304 a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------------~~~~~viVIatTn~p~----- 365 (496)
|.. .+.+|+|||++.+.++ +.+.|+..++.-. .....+.||+|+|...
T Consensus 102 A~~-~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHH-cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 222 2369999999986433 2233444443210 0112466889999762
Q ss_pred cccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975 366 ELDAAMLRRLEKRILVPLPDTEARRAMFESLL 397 (496)
Q Consensus 366 ~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l 397 (496)
.+++++++||. .+.++.|+.++..+|++...
T Consensus 168 ~l~~aL~~R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLDRLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHhhcE-EEECCCCCHHHHHHHHHHhh
Confidence 57899999995 59999999999999998865
No 134
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.36 E-value=6.5e-13 Score=128.98 Aligned_cols=169 Identities=23% Similarity=0.358 Sum_probs=103.2
Q ss_pred CCCccchhh-cc--hHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeec
Q 010975 211 PDVKWESIK-GL--ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 282 (496)
Q Consensus 211 ~~~~l~dli-G~--e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~ 282 (496)
|+.+|++.+ |. +.+...+..+...+. ...+.++||||+|+|||+|.+++++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 567788864 53 333434443332211 122468999999999999999999876 567889988
Q ss_pred ccccccccCChHH-HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975 283 SSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 361 (496)
Q Consensus 283 s~l~~~~~G~~e~-~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT 361 (496)
.++...+...... .+..+.+..+ ...+|+||+++.+.++ ..+...++..++.....+.. +|+++.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~k~-li~ts~ 138 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESGKQ-LILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTTSE-EEEEES
T ss_pred HHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhCCe-EEEEeC
Confidence 8776554322211 1222222222 3469999999988543 23445666666665555554 455555
Q ss_pred CCcc---cccHHHHHHhhh--hhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975 362 NLPW---ELDAAMLRRLEK--RILVPLPDTEARRAMFESLLPSQTGE 403 (496)
Q Consensus 362 n~p~---~Ld~aL~rRf~~--~I~~~~P~~eeR~~Il~~~l~~~~~~ 403 (496)
..|. .+++.|.+||.. .+.+..|+.++|..|++..+......
T Consensus 139 ~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~ 185 (219)
T PF00308_consen 139 RPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE 185 (219)
T ss_dssp S-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--
T ss_pred CCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 5654 367899999964 67788899999999999998776655
No 135
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.36 E-value=2.6e-12 Score=113.29 Aligned_cols=138 Identities=41% Similarity=0.647 Sum_probs=88.7
Q ss_pred cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHH
Q 010975 220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKL 296 (496)
Q Consensus 220 G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~ 296 (496)
|.+...+.+...+... ..++++++||||+|||++++.+++.+ +.+++.+++..............
T Consensus 2 ~~~~~~~~i~~~~~~~------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALELP------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 5566666666665331 23689999999999999999999998 88899998877654332211111
Q ss_pred ---HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc---cCcEEEEEeccCCcc--ccc
Q 010975 297 ---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---SDELVFVLAATNLPW--ELD 368 (496)
Q Consensus 297 ---l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---~~~~viVIatTn~p~--~Ld 368 (496)
............+.+|+|||++.+.... ...++..+..... ....+.+|++++... .++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSRGA-------------QNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhHHH-------------HHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 1122233344567899999999873221 1223333332221 134467788888776 788
Q ss_pred HHHHHHhhhhhccc
Q 010975 369 AAMLRRLEKRILVP 382 (496)
Q Consensus 369 ~aL~rRf~~~I~~~ 382 (496)
+.+.+||+.++.++
T Consensus 137 ~~~~~r~~~~i~~~ 150 (151)
T cd00009 137 RALYDRLDIRIVIP 150 (151)
T ss_pred hhHHhhhccEeecC
Confidence 89999997666654
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=3.5e-12 Score=140.86 Aligned_cols=163 Identities=19% Similarity=0.207 Sum_probs=116.0
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce----------
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 276 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------- 276 (496)
.+++++.+|++|+|++++++.|...+... ..++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 45678899999999999999999988542 123569999999999999999999988532
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhhhc----CCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~----~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
++.+++.+ ......++.+.+.+... ...|++|||+|.|.. ..
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a 137 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-------------AA 137 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------HH
Confidence 22222211 01134566666555432 235999999998832 23
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 403 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~ 403 (496)
.+.|+..|+. .+..+++|.+|+.+..+-+++++|+.. +.|..++.++....++..+...+..
T Consensus 138 ~naLLK~LEe---pp~~tifIL~tt~~~kIl~tI~SRc~i-v~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 138 FNAFLKTLEE---PPSYAIFILATTEKHKILPTILSRCQI-FDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred HHHHHHHHhC---CCCCeEEEEEeCCchhchHHHHhhhhe-eecCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678888874 223344555666677899999999965 9999999999998888877665543
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.34 E-value=1.6e-12 Score=146.95 Aligned_cols=166 Identities=23% Similarity=0.244 Sum_probs=116.4
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc-------
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 288 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~------- 288 (496)
+.|+|++++++.+.+.+...... ......|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 35899999999998887542110 00011233458999999999999999999999999999998876432
Q ss_pred -----ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccCcEE
Q 010975 289 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELV 355 (496)
Q Consensus 289 -----~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~v 355 (496)
|+|..+ ...+.+.++....+||+|||+|++.++ +.+.|++.+|+-. ..-.++
T Consensus 531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCHH-------------HHHHHHHhhccCeeecCCCcccCCCCC
Confidence 223211 122344445556689999999987432 4456677666321 122457
Q ss_pred EEEeccCCcc-------------------------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCC
Q 010975 356 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 399 (496)
Q Consensus 356 iVIatTn~p~-------------------------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~ 399 (496)
+||+|||... .+.|.++.|++.++.|.+.+.++..+|++..+.+
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 7888987641 1567888899999999999999999999988753
No 138
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.34 E-value=1.8e-12 Score=133.29 Aligned_cols=196 Identities=21% Similarity=0.216 Sum_probs=124.1
Q ss_pred hhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc-----
Q 010975 218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----- 289 (496)
Q Consensus 218 liG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~----- 289 (496)
++|.....+.+.+.+.... .....|||+|++||||+++|++|+... +.+|+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4566666666666554332 223579999999999999999998866 4799999998764321
Q ss_pred cCChH-------HHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------ccccCcE
Q 010975 290 RGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQSDEL 354 (496)
Q Consensus 290 ~G~~e-------~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~~~~~ 354 (496)
.|... ......++.+. .++||||||+.|... ++..|+..++. .......
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccc
Confidence 11100 00111244443 389999999998543 22334444432 1122344
Q ss_pred EEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecc-cCCcCCc
Q 010975 355 VFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT-EGYSGSD 422 (496)
Q Consensus 355 viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t-~g~s~~d 422 (496)
+.+|++|+..- .+.+.|..|+.. +.+..|...+|.+ ++++++...... ..... .++++..
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~-------~~~~~~~~ls~~a 206 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLDRLAF-DVITLPPLRERQEDIMLLAEHFAIRMARE-------LGLPLFPGFTPQA 206 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHHHhcc-hhcCCCchhhhhhhHHHHHHHHHHHHHHH-------hCCCCCCCcCHHH
Confidence 77888887641 355677778854 6777787777765 444444332111 11112 4678889
Q ss_pred hhhcchhhhccHHHHHHHHhhcccc
Q 010975 423 IRLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 423 I~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
+..|.++.|.++++++.+.++....
T Consensus 207 ~~~L~~y~WPGNvrEL~n~i~~~~~ 231 (329)
T TIGR02974 207 REQLLEYHWPGNVRELKNVVERSVY 231 (329)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999888775543
No 139
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.32 E-value=1.5e-12 Score=124.44 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=107.3
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-c----ceeeee
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K----TTFFNI 280 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~----~~~i~v 280 (496)
|++++.+..+.|++|.++..++|.-+.... .-.+++|.|||||||||-+.++|+++ | --+.++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~g------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEG------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcC------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 888999999999999999999998766432 12589999999999999999999988 2 346778
Q ss_pred ecccccccccCChHHHHHHHHHHhh-hcCC---cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975 281 SASSVVSKWRGDSEKLIKVLFELAR-HHAP---STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 356 (496)
Q Consensus 281 ~~s~l~~~~~G~~e~~l~~lf~~a~-~~~p---~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 356 (496)
++++-.+-.+ ....+ ..|..-+ ...| .|+++||+|++....+ .+|-..|+-+.+ ...
T Consensus 85 NASdeRGIDv--VRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT~gAQ-------------QAlRRtMEiyS~---ttR 145 (333)
T KOG0991|consen 85 NASDERGIDV--VRNKI-KMFAQKKVTLPPGRHKIIILDEADSMTAGAQ-------------QALRRTMEIYSN---TTR 145 (333)
T ss_pred cCccccccHH--HHHHH-HHHHHhhccCCCCceeEEEeeccchhhhHHH-------------HHHHHHHHHHcc---cch
Confidence 8776543211 12222 3343333 2223 4999999999964321 122233332222 234
Q ss_pred EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhh
Q 010975 357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 396 (496)
Q Consensus 357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~ 396 (496)
+..++|..+.+-+++.+|+.. +.+.-.+.++...-+...
T Consensus 146 FalaCN~s~KIiEPIQSRCAi-LRysklsd~qiL~Rl~~v 184 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQSRCAI-LRYSKLSDQQILKRLLEV 184 (333)
T ss_pred hhhhhcchhhhhhhHHhhhHh-hhhcccCHHHHHHHHHHH
Confidence 667899999999999999966 677666655554433333
No 140
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.32 E-value=1.4e-12 Score=133.99 Aligned_cols=162 Identities=20% Similarity=0.271 Sum_probs=100.7
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-------ccee--eeee
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTF--FNIS 281 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-------~~~~--i~v~ 281 (496)
.+..|++++|++++++.+.-.+..+ ...|+||.|+||||||++|+++++.+ +.++ ..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 3456999999999999888644321 12589999999999999999999988 2211 1110
Q ss_pred cc---------cc---------------cccccCC--hHHHHH---HHHHHh--hhcCCcceehhhHHHHHhhhcCCcch
Q 010975 282 AS---------SV---------------VSKWRGD--SEKLIK---VLFELA--RHHAPSTIFLDEIDAIISQRGEARSE 330 (496)
Q Consensus 282 ~s---------~l---------------~~~~~G~--~e~~l~---~lf~~a--~~~~p~ILfIDEID~L~~~r~~~~~~ 330 (496)
.. .+ .+...|. .+..+. ..|..- .....++||+||++.+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~------- 143 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH------- 143 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH-------
Confidence 00 00 0001111 000000 001100 0111269999999987433
Q ss_pred hHHhhhhhhhhhhhccCcc----------ccCcEEEEEeccCCcc-cccHHHHHHhhhhhcccCCCH-HHHHHHHHhhC
Q 010975 331 HEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRAMFESLL 397 (496)
Q Consensus 331 ~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIatTn~p~-~Ld~aL~rRf~~~I~~~~P~~-eeR~~Il~~~l 397 (496)
+++.|+..|+.-. ..+.++++++|+|..+ .+++++++||...+.+++|.. ++|.++++...
T Consensus 144 ------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 144 ------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred ------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 3344555554211 1234577888888654 589999999999899988866 99999998754
No 141
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.30 E-value=2.1e-12 Score=141.20 Aligned_cols=216 Identities=26% Similarity=0.300 Sum_probs=137.7
Q ss_pred CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc
Q 010975 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 286 (496)
Q Consensus 210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~ 286 (496)
.+..++++++|.+...+++.+.+..... ....|||+|++||||+++|++|+... +.+|+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3446789999999999888887754332 23579999999999999999999876 5799999998763
Q ss_pred ccc-----cCChH----HHH---HHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc-----
Q 010975 287 SKW-----RGDSE----KLI---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----- 349 (496)
Q Consensus 287 ~~~-----~G~~e----~~l---~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----- 349 (496)
... .|... ... ...+..+ ..++|||||||.|... ++..|+..++.-.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECC
Confidence 221 11100 000 0112222 2479999999998543 2334555443211
Q ss_pred ---ccCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecc
Q 010975 350 ---QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT 415 (496)
Q Consensus 350 ---~~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t 415 (496)
.....+.+|++|+..- .+.+.|..|+.. +.+..|...+|.+ ++++++....... ...
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLreR~eDi~~L~~~~l~~~~~~~-------~~~- 394 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINV-VPIFLPPLRERREDIPLLAEAFLEKFNREN-------GRP- 394 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcC-CeeeCCCcccccccHHHHHHHHHHHHHHHc-------CCC-
Confidence 1112466777776541 255677778854 6667776666643 5566654322111 111
Q ss_pred cCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHH
Q 010975 416 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 466 (496)
Q Consensus 416 ~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~ 466 (496)
.++++..+..|.++.|.++++++.+.++......... .|+.+|+.
T Consensus 395 ~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~~~------~I~~~~l~ 439 (534)
T TIGR01817 395 LTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSG------TITRSDFS 439 (534)
T ss_pred CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC------cccHHHCc
Confidence 3578888999999999999999988887655433222 25666653
No 142
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.29 E-value=2e-12 Score=140.34 Aligned_cols=205 Identities=23% Similarity=0.255 Sum_probs=128.6
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh-----------hcceeeeee
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-----------CKTTFFNIS 281 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~-----------l~~~~i~v~ 281 (496)
..|++++|.....+++.+.+...- ....+|||+|++||||+++|++|++. .+.||+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 358899999998888888774432 22357999999999999999999987 367999999
Q ss_pred ccccccc-----ccCC----hHHH----HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC-
Q 010975 282 ASSVVSK-----WRGD----SEKL----IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG- 347 (496)
Q Consensus 282 ~s~l~~~-----~~G~----~e~~----l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~- 347 (496)
|+.+... ..|. +... -..+|+.+.. ++||||||+.|... ++..|+..++.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~ 349 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLP-------------LQTRLLRVLEEK 349 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHH-------------HHHHHHhhhhcC
Confidence 9876432 1111 1111 1124555543 79999999998544 23344444432
Q ss_pred -------ccccCcEEEEEeccCCcc-c------ccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcc
Q 010975 348 -------LTQSDELVFVLAATNLPW-E------LDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYD 409 (496)
Q Consensus 348 -------~~~~~~~viVIatTn~p~-~------Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~ 409 (496)
.......+.+|++|+..- . +.+.|.-|+.. +.+..|...+|.+ ++++++.+.....+..
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~-- 426 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSI-LRLQLPPLRERVADILPLAESFLKQSLAALSAP-- 426 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcC-CeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--
Confidence 122223467888887652 1 33445557754 7888888888775 4555554321111111
Q ss_pred eeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975 410 LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 410 ~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
+....-++..+.+..|.++.|.+++|++.+.++....
T Consensus 427 -~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 427 -FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred -CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 1111112223344678889999999999888876543
No 143
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.3e-11 Score=128.48 Aligned_cols=226 Identities=20% Similarity=0.258 Sum_probs=140.1
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce-----eeeeecccccccc
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----FFNISASSVVSKW 289 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-----~i~v~~s~l~~~~ 289 (496)
-+.+.+.+..++++...+...+.. ..|.+++++||||||||++++.+++++... ++++||....+.+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 345899999999999887554432 234569999999999999999999999444 8999996654332
Q ss_pred c---------------CCh-HHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccC
Q 010975 290 R---------------GDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 352 (496)
Q Consensus 290 ~---------------G~~-e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 352 (496)
. |.. ......+++.... ...-|+++||+|.|....+ .++-.|+...+ ...
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~---~~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPG---ENK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hHHHHHHhhcc---ccc
Confidence 1 221 1222233333322 3446999999999975522 23333433333 225
Q ss_pred cEEEEEeccCCcc---cccHHHHHHhh-hhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcch
Q 010975 353 ELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 428 (496)
Q Consensus 353 ~~viVIatTn~p~---~Ld~aL~rRf~-~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~ 428 (496)
.++.+|+.+|..+ .+++.+.+++. ..|.|++++.+|...|++......-.... ++ .++-.+|.
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~------------~~-~~vl~lia 221 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGV------------ID-DDVLKLIA 221 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCC------------cC-ccHHHHHH
Confidence 6688999999884 58899999774 45789999999999999988764322111 11 11111111
Q ss_pred ---hhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975 429 ---EAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 477 (496)
Q Consensus 429 ---~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~ 477 (496)
.+..+.+|+.+..+....+++..+.. ..++.+|+.+|...+.+...
T Consensus 222 ~~~a~~~GDAR~aidilr~A~eiAe~~~~---~~v~~~~v~~a~~~~~~~~~ 270 (366)
T COG1474 222 ALVAAESGDARKAIDILRRAGEIAEREGS---RKVSEDHVREAQEEIERDVL 270 (366)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHhhCC---CCcCHHHHHHHHHHhhHHHH
Confidence 11112445555555444443332222 34788888888666554433
No 144
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.29 E-value=1.2e-11 Score=118.75 Aligned_cols=166 Identities=18% Similarity=0.228 Sum_probs=120.3
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 285 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l 285 (496)
..+.+.+.+|+|.+.+|+.|.+....... ..|-++|||+|..|||||+|+||+.+++ +.++++|+..++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 34567899999999999999886644332 2345899999999999999999999988 677899988777
Q ss_pred cccccCChHHHHHHHHHHhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc-CccccCcEEEEEeccCC
Q 010975 286 VSKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD-GLTQSDELVFVLAATNL 363 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld-~~~~~~~~viVIatTn~ 363 (496)
. .+-.+++..+.. ..-|||+|++-- ..+ ..-...|-..++ ++..++.+|+|.||+|+
T Consensus 125 ~---------~Lp~l~~~Lr~~~~kFIlFcDDLSF-----e~g-------d~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 125 A---------TLPDLVELLRARPEKFILFCDDLSF-----EEG-------DDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred h---------hHHHHHHHHhcCCceEEEEecCCCC-----CCC-------chHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 3 233344444432 235999998821 111 111123334444 45678889999999998
Q ss_pred cccccH----------------------HHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975 364 PWELDA----------------------AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 403 (496)
Q Consensus 364 p~~Ld~----------------------aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~ 403 (496)
...++. .+-+||...+.|.+++.++-..|+.++++.....
T Consensus 184 RHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 184 RHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred cccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 754331 3445999999999999999999999999776655
No 145
>PRK05642 DNA replication initiation factor; Validated
Probab=99.29 E-value=9.1e-12 Score=122.16 Aligned_cols=129 Identities=18% Similarity=0.230 Sum_probs=87.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 326 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~ 326 (496)
+.++|+||+|+|||+|++++++++ +..+++++..++... ...+.+.... ..+|+|||++.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 579999999999999999999865 567888887776532 1122333332 2589999999875331
Q ss_pred CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCC
Q 010975 327 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 327 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
.....|+..++.....+. .++++++..|.. ..+.|++||. ..+.+..|+.+++..+++..+...
T Consensus 114 ---------~~~~~Lf~l~n~~~~~g~-~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~ 182 (234)
T PRK05642 114 ---------DWEEALFHLFNRLRDSGR-RLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR 182 (234)
T ss_pred ---------HHHHHHHHHHHHHHhcCC-EEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 122345555554433333 456666655633 4689999994 556778999999999999655443
No 146
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.28 E-value=7.9e-12 Score=135.89 Aligned_cols=200 Identities=21% Similarity=0.222 Sum_probs=132.2
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc--
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-- 288 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~-- 288 (496)
..++++|.....+++.+.+...- ....+|||+|++||||+++|++|+... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 56789999999988888775532 233689999999999999999999876 579999999876432
Q ss_pred ---ccCChH----HH---HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------ccc
Q 010975 289 ---WRGDSE----KL---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQ 350 (496)
Q Consensus 289 ---~~G~~e----~~---l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~ 350 (496)
..|... +. ....++.+. .++|||||||.|.... +..|+..++. ...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~-------------Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLAL-------------QAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHH-------------HHHHHHHHhcCCEeeCCCCcc
Confidence 111110 00 011344443 3799999999986442 2334444432 112
Q ss_pred cCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975 351 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS 419 (496)
Q Consensus 351 ~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s 419 (496)
....+.||++|+..- .+.+.|..|+.. +.+..|...+|.+ ++++++.+.... ......+++
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~-~~i~lPpLreR~eDI~~L~~~fl~~~~~~-------~~~~~~~~s 390 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLSV-FPLSVPPLRERGDDVLLLAGYFLEQNRAR-------LGLRSLRLS 390 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhcccc-cEeeCCCchhchhhHHHHHHHHHHHHHHH-------cCCCCCCCC
Confidence 223577888887652 255666667755 7788888888875 444444432111 111234688
Q ss_pred CCchhhcchhhhccHHHHHHHHhhcccc
Q 010975 420 GSDIRLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
+..+..|.++.|.++++++.+.++....
T Consensus 391 ~~a~~~L~~y~WPGNvrEL~~~i~ra~~ 418 (509)
T PRK05022 391 PAAQAALLAYDWPGNVRELEHVISRAAL 418 (509)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 8899999999999999999887775543
No 147
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.28 E-value=6.2e-12 Score=129.25 Aligned_cols=199 Identities=23% Similarity=0.213 Sum_probs=130.3
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc---
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 288 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~--- 288 (496)
+++++|.+...+++.+.+..... ....|||+|++||||+++|++++... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 57899999988888887755432 23579999999999999999998766 468999999876321
Q ss_pred --ccCChH-------HHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------ccc
Q 010975 289 --WRGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQS 351 (496)
Q Consensus 289 --~~G~~e-------~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~ 351 (496)
..|... ......+..+. .++|||||||.|... ++..|+..++.- ...
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 111110 00012233333 379999999998543 223344444321 112
Q ss_pred CcEEEEEeccCCc-------ccccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeec-ccCCc
Q 010975 352 DELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER-TEGYS 419 (496)
Q Consensus 352 ~~~viVIatTn~p-------~~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~-t~g~s 419 (496)
...+.||++|+.. ..+.+.|..||.. +.+..|...+|.+ ++++++...... .... ..+++
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~-------~~~~~~~~~s 210 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLAF-DVVQLPPLRERQSDIMLMAEHFAIQMCRE-------LGLPLFPGFT 210 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHHhcCC-CEEECCChhhhhhhHHHHHHHHHHHHHHH-------hCCCCCCCCC
Confidence 2346778887664 2355777888855 6778888888765 444554332111 1111 24688
Q ss_pred CCchhhcchhhhccHHHHHHHHhhcccc
Q 010975 420 GSDIRLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
+..+..+.++.|.++++++.+.++....
T Consensus 211 ~~al~~L~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 211 ERARETLLNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 8899999999999999998887775543
No 148
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=1.3e-12 Score=139.52 Aligned_cols=138 Identities=15% Similarity=0.256 Sum_probs=92.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChHH---HHHHHHHHhhhcCCcceehhhHHHHH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAII 321 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e~---~l~~lf~~a~~~~p~ILfIDEID~L~ 321 (496)
++++|+|++|+|||+|++++++++ +..++++++.++...+...... .+..+.+.. ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 579999999999999999999965 4678889888876655433221 122222222 245699999999875
Q ss_pred hhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc---cccHHHHHHhh--hhhcccCCCHHHHHHHHHhh
Q 010975 322 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESL 396 (496)
Q Consensus 322 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~---~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~ 396 (496)
++ ....+.|+..++.....+. .+|+++...|. .+++.|.+||. ..+.+..|+.++|.+|++..
T Consensus 220 ~k-----------~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YK-----------EKTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CC-----------HHHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 33 1123345555544433343 33444444453 36789999995 55678889999999999998
Q ss_pred CCCCC
Q 010975 397 LPSQT 401 (496)
Q Consensus 397 l~~~~ 401 (496)
+...+
T Consensus 288 ~~~~g 292 (450)
T PRK14087 288 IKNQN 292 (450)
T ss_pred HHhcC
Confidence 87654
No 149
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.26 E-value=8.5e-12 Score=128.54 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=103.6
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-------ceeeeee--
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNIS-- 281 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-------~~~i~v~-- 281 (496)
+...|++|+|++++|..|.-.+..|. ..++||.||+|||||++||++++.+. .+|..-.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p~------------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDPK------------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCCC------------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 45579999999999999998776643 26899999999999999999988762 1221000
Q ss_pred ----ccccccc---------------c----cCChHHH------HHHHHHHhh---------hcCCcceehhhHHHHHhh
Q 010975 282 ----ASSVVSK---------------W----RGDSEKL------IKVLFELAR---------HHAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 282 ----~s~l~~~---------------~----~G~~e~~------l~~lf~~a~---------~~~p~ILfIDEID~L~~~ 323 (496)
++.+.+. + .|.++.. +...+.... ....++|||||++.+.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 0000000 0 0112221 111111110 112379999999998543
Q ss_pred hcCCcchhHHhhhhhhhhhhhccC---------cc-ccCcEEEEEeccCCcc-cccHHHHHHhhhhhcccCCC-HHHHHH
Q 010975 324 RGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPD-TEARRA 391 (496)
Q Consensus 324 r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~viVIatTn~p~-~Ld~aL~rRf~~~I~~~~P~-~eeR~~ 391 (496)
++..|+..|+. .. ..+.++++|+|.|..+ .+.+++.+||...+.+..|+ .+++.+
T Consensus 160 -------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~ 226 (350)
T CHL00081 160 -------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVK 226 (350)
T ss_pred -------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHH
Confidence 23345554432 11 1234577777777654 59999999999999999997 599999
Q ss_pred HHHhhC
Q 010975 392 MFESLL 397 (496)
Q Consensus 392 Il~~~l 397 (496)
|++...
T Consensus 227 il~~~~ 232 (350)
T CHL00081 227 IVEQRT 232 (350)
T ss_pred HHHhhh
Confidence 998864
No 150
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.26 E-value=5e-12 Score=137.23 Aligned_cols=215 Identities=20% Similarity=0.245 Sum_probs=135.5
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc-
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK- 288 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~- 288 (496)
..|++++|.....+++.+.+...-. ...+|||+|++||||+++|++|++.. +.||+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 5688999999988888887744322 23589999999999999999999865 679999999876432
Q ss_pred ----ccCC----hHH----HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------
Q 010975 289 ----WRGD----SEK----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------- 348 (496)
Q Consensus 289 ----~~G~----~e~----~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-------- 348 (496)
..|. +.. ....+|+.+.. ++||||||+.|... ++..|+..++.-
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCCC
Confidence 1111 111 11234444443 79999999998544 223344444321
Q ss_pred cccCcEEEEEeccCCcc--c-----ccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccC
Q 010975 349 TQSDELVFVLAATNLPW--E-----LDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEG 417 (496)
Q Consensus 349 ~~~~~~viVIatTn~p~--~-----Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g 417 (496)
......+.+|++|+..- . +.+.|..|+.. +.+..|...+|.+ ++++++........ -+
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~----------~~ 411 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSI-LRIALPPLRERPGDILPLAAEYLVQAAAALR----------LP 411 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCC-cEEeCCCchhchhHHHHHHHHHHHHHHHHcC----------CC
Confidence 11223457888887662 1 33344446644 7778888888775 45555544321111 13
Q ss_pred CcCCchhh-------cchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHH
Q 010975 418 YSGSDIRL-------VSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI 467 (496)
Q Consensus 418 ~s~~dI~~-------l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~ 467 (496)
+++..+.. |.++.|.+++|++.+.++.......... ...|+.+|+..
T Consensus 412 ~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~---~~~I~~~~l~~ 465 (526)
T TIGR02329 412 DSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMP---AGALTPDVLRA 465 (526)
T ss_pred CCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCC---CCccCHHHhhh
Confidence 55566666 9999999999999988876544322100 12367777643
No 151
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.24 E-value=9.7e-12 Score=135.43 Aligned_cols=204 Identities=20% Similarity=0.224 Sum_probs=130.9
Q ss_pred CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc
Q 010975 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 286 (496)
Q Consensus 210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~ 286 (496)
.....|++++|.....+++.+.+..... ....|||+|++||||+++|++++... +.+|+.++|..+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 4567899999999877777766643221 23579999999999999999998765 4689999998764
Q ss_pred cc-----ccCChH-------HHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc------
Q 010975 287 SK-----WRGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------ 348 (496)
Q Consensus 287 ~~-----~~G~~e-------~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------ 348 (496)
.. ..|... .....+|+.+.. ++|||||||.|.... +..|+..++.-
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L~~~~-------------Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEMSPRM-------------QAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhCCHHH-------------HHHHHHHHhcCCcccCC
Confidence 32 111110 001123444443 799999999985442 23344444321
Q ss_pred --cccCcEEEEEeccCCc-c------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecc
Q 010975 349 --TQSDELVFVLAATNLP-W------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT 415 (496)
Q Consensus 349 --~~~~~~viVIatTn~p-~------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t 415 (496)
......+.||++|+.+ . .+.+.|..|+.. +.+..|...+|.+ ++++++.......+ ...
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g-------~~~ 403 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQG-------VPR 403 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcC-------CCC
Confidence 1122356788887665 2 245667778865 7788888877774 34444433211111 112
Q ss_pred cCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975 416 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 416 ~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
.++++..+..|.++.|.++++++.+.++....
T Consensus 404 ~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 404 PKLAADLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred CCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35777888899999999999998887765543
No 152
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.24 E-value=8.2e-12 Score=138.92 Aligned_cols=156 Identities=23% Similarity=0.302 Sum_probs=104.1
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh--------------------
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------------------- 273 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-------------------- 273 (496)
.|.+|+|++.+|..|.-....+. ..+|||.|+||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~------------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPR------------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCC------------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 37899999999988876665432 1579999999999999999999887
Q ss_pred ---------------cceeeeeecccccccccCCh--HHHHH--------HHHHHhhhcCCcceehhhHHHHHhhhcCCc
Q 010975 274 ---------------KTTFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEIDAIISQRGEAR 328 (496)
Q Consensus 274 ---------------~~~~i~v~~s~l~~~~~G~~--e~~l~--------~lf~~a~~~~p~ILfIDEID~L~~~r~~~~ 328 (496)
..+|+.+.++.......|.. +..+. .++..+ ..+|||||||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH-----
Confidence 24666665554333333321 11110 111122 2269999999998533
Q ss_pred chhHHhhhhhhhhhhhccCc----------cccCcEEEEEeccCCc-ccccHHHHHHhhhhhcccCC-CHHHHHHHHHhh
Q 010975 329 SEHEASRRLKTELLIQMDGL----------TQSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAMFESL 396 (496)
Q Consensus 329 ~~~~~~~~i~~~Ll~~ld~~----------~~~~~~viVIatTn~p-~~Ld~aL~rRf~~~I~~~~P-~~eeR~~Il~~~ 396 (496)
+++.|+..|+.- ......+++|+|+|.. ..+.++|++||...+.++.+ +.+++.++++..
T Consensus 142 --------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 142 --------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred --------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 344555555421 1122357888888854 35889999999988888876 467788888764
Q ss_pred C
Q 010975 397 L 397 (496)
Q Consensus 397 l 397 (496)
+
T Consensus 214 ~ 214 (633)
T TIGR02442 214 L 214 (633)
T ss_pred H
Confidence 4
No 153
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.3e-11 Score=136.91 Aligned_cols=168 Identities=23% Similarity=0.269 Sum_probs=121.2
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeeccccccc----
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK---- 288 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l~~~---- 288 (496)
+.|+|++++...+...+..... -.....+|..++||.||+|+|||-||+++|..+. ..++++++|++..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRa---GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARA---GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhc---CCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 3589999999999988854321 1111123445789999999999999999999995 78999999988643
Q ss_pred -ccCChHHHH-----HHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccCcE
Q 010975 289 -WRGDSEKLI-----KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDEL 354 (496)
Q Consensus 289 -~~G~~e~~l-----~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~ 354 (496)
.+|..++.+ ..+.+..+.++++||++|||++-.+ .+.+-||+.+|.- .-.-.+
T Consensus 568 rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp-------------dV~nilLQVlDdGrLTD~~Gr~VdFrN 634 (786)
T COG0542 568 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP-------------DVFNLLLQVLDDGRLTDGQGRTVDFRN 634 (786)
T ss_pred HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH-------------HHHHHHHHHhcCCeeecCCCCEEecce
Confidence 223322222 2355666677779999999988643 4667788888732 122346
Q ss_pred EEEEeccCCcc----------------------------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCC
Q 010975 355 VFVLAATNLPW----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 399 (496)
Q Consensus 355 viVIatTn~p~----------------------------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~ 399 (496)
.+||+|||--. ...|.++.|++.+|.|.+.+.+...+|+...+..
T Consensus 635 tiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 635 TIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred eEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 88999997331 0446777799999999999999999998887643
No 154
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.23 E-value=2.2e-11 Score=126.98 Aligned_cols=141 Identities=20% Similarity=0.337 Sum_probs=98.8
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~ 323 (496)
.+.++||||+|.|||+|++|++++. +..+++++...+..+++.+....-..-|++-. +-.+++||||+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3679999999999999999999988 45688888777765554333222223344333 3369999999999765
Q ss_pred hcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCC
Q 010975 324 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 324 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~ 398 (496)
. +...+++..++.+...+. .+|+++...|.+ +.+.|++||. .++.+.+|+.+.|..|++....
T Consensus 191 ~-----------~~qeefFh~FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 E-----------RTQEEFFHTFNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred h-----------hHHHHHHHHHHHHHhcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 2 234556665555544555 446656666654 5589999996 4567788999999999999766
Q ss_pred CCCCC
Q 010975 399 SQTGE 403 (496)
Q Consensus 399 ~~~~~ 403 (496)
.....
T Consensus 259 ~~~~~ 263 (408)
T COG0593 259 DRGIE 263 (408)
T ss_pred hcCCC
Confidence 55554
No 155
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.22 E-value=2.1e-12 Score=123.10 Aligned_cols=45 Identities=47% Similarity=0.660 Sum_probs=37.8
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
|+||+|++.+|+.|.-...- ..|+||+||||||||++|+.+...+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999999877643 2689999999999999999999977
No 156
>PRK06620 hypothetical protein; Validated
Probab=99.22 E-value=3.5e-11 Score=116.47 Aligned_cols=147 Identities=16% Similarity=0.226 Sum_probs=89.3
Q ss_pred CCCCccchhh-cc--hHHHHHHhhhhcccccCccccccccCc-cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 210 SPDVKWESIK-GL--ENAKRLLKEAVVMPIKYPKYFTGLLSP-WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 210 ~~~~~l~dli-G~--e~vk~~L~e~l~~~~~~~~~~~~~~~~-~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
.+..+|++++ |. +.+...+.++...+- ..+ .+.++||||||+|||+|++++++..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~---------~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGFG---------VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHccc---------cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 3556688744 43 234455554432110 112 2679999999999999999999988753322 1110
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~ 365 (496)
....+ . ...+|+|||||.+. . ..|+..++.+...+. .++++++..|.
T Consensus 79 -----------~~~~~----~-~~d~lliDdi~~~~-------------~---~~lf~l~N~~~e~g~-~ilits~~~p~ 125 (214)
T PRK06620 79 -----------NEEIL----E-KYNAFIIEDIENWQ-------------E---PALLHIFNIINEKQK-YLLLTSSDKSR 125 (214)
T ss_pred -----------chhHH----h-cCCEEEEeccccch-------------H---HHHHHHHHHHHhcCC-EEEEEcCCCcc
Confidence 01111 1 22699999998541 0 123333333333444 45666665554
Q ss_pred c--ccHHHHHHhhh--hhcccCCCHHHHHHHHHhhCCCCC
Q 010975 366 E--LDAAMLRRLEK--RILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 366 ~--Ld~aL~rRf~~--~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
. + ++|++|+.. ++.+..|+.+++..+++..+....
T Consensus 126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 3 6 889999962 488899999999999988876543
No 157
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.21 E-value=1.9e-11 Score=137.51 Aligned_cols=200 Identities=23% Similarity=0.302 Sum_probs=131.0
Q ss_pred CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc
Q 010975 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 288 (496)
Q Consensus 212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~ 288 (496)
+..|++++|.....+.+.+.+..... ...+|||+|++|||||++|++|+... +.+|+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35678999999998888877754322 23579999999999999999999866 679999999876322
Q ss_pred -----ccCC--------hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------
Q 010975 289 -----WRGD--------SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------- 347 (496)
Q Consensus 289 -----~~G~--------~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~-------- 347 (496)
..|. ..... ..++.+. .++||||||+.+... ++..|+..++.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a~---~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFELAD---KSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHhcC---CCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCC
Confidence 1121 11111 2344443 389999999998543 22334444432
Q ss_pred ccccCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeeccc
Q 010975 348 LTQSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE 416 (496)
Q Consensus 348 ~~~~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~ 416 (496)
.......+.+|++|+..- .+...+..|+.. +.+..|...+|.+ ++++++.+.... ..+...
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~-~~i~lPpLreR~~Di~~L~~~~l~~~~~~-------~~~~~~ 576 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV-FPIHLPPLRERPEDIPLLVKAFTFKIARR-------MGRNID 576 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCe-eEEeCCChhhhHhHHHHHHHHHHHHHHHH-------cCCCCC
Confidence 112234577888887652 233445556644 6788898888876 445554432211 112234
Q ss_pred CCcCCchhhcchhhhccHHHHHHHHhhccc
Q 010975 417 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 446 (496)
Q Consensus 417 g~s~~dI~~l~~~A~~~a~rR~~~~le~~~ 446 (496)
++++..++.|.+..|.++++++.+.++...
T Consensus 577 ~~s~~al~~L~~y~WPGNvrEL~~~i~~a~ 606 (686)
T PRK15429 577 SIPAETLRTLSNMEWPGNVRELENVIERAV 606 (686)
T ss_pred CcCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 578888999999999999999888776554
No 158
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=2.6e-11 Score=123.91 Aligned_cols=152 Identities=15% Similarity=0.184 Sum_probs=105.9
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce--------eeeeecccc
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------FFNISASSV 285 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------~i~v~~s~l 285 (496)
+|++++|++.+++.|...+... ..++.+||+||+|+|||++|+++|+.+.+. +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 4899999999999999887432 223568999999999999999999987332 2222211
Q ss_pred cccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975 286 VSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 361 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT 361 (496)
.+.. -.-..++.+.+.+.. ....|++||++|.+.. ...+.|+..++. .+..+++|.+|
T Consensus 69 ~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-------------~a~naLLK~LEe---pp~~t~~il~~ 130 (313)
T PRK05564 69 NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-------------QAQNAFLKTIEE---PPKGVFIILLC 130 (313)
T ss_pred cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-------------HHHHHHHHHhcC---CCCCeEEEEEe
Confidence 0111 122345665554332 2345999999998832 234678888873 33445555566
Q ss_pred CCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975 362 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 397 (496)
Q Consensus 362 n~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l 397 (496)
+.++.+.+++++|+. .+.++.|+.++....++...
T Consensus 131 ~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 131 ENLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred CChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHh
Confidence 788899999999996 59999999999888877654
No 159
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.21 E-value=1.6e-11 Score=137.17 Aligned_cols=218 Identities=19% Similarity=0.197 Sum_probs=137.1
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 287 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~ 287 (496)
+...|++++|.+...+++.+.+..... ....|||+|++||||+++|++|++.. +.+|+.++|..+..
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 345699999999888888776654332 23579999999999999999999876 47999999987632
Q ss_pred -----cccCCh----HHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cc
Q 010975 288 -----KWRGDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQ 350 (496)
Q Consensus 288 -----~~~G~~----e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~ 350 (496)
+..|.. .......|+.+ ..++||||||+.|... ++..|+..++.- ..
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 122211 00000123333 2479999999998544 223344444321 11
Q ss_pred cCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975 351 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS 419 (496)
Q Consensus 351 ~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s 419 (496)
..-.+.+|+||+..- .+.+.|.-|+.. +.+..|...+|.+ ++++++....... ... -+++
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~-~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~-~~~s 524 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYALHA-FEITIPPLRMRREDIPALVNNKLRSLEKRF-------STR-LKID 524 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhhhhce-eEEeCCChhhhhhHHHHHHHHHHHHHHHHh-------CCC-CCcC
Confidence 122577888887652 244455557754 7788888888864 4445544321110 011 2477
Q ss_pred CCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975 420 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 469 (496)
Q Consensus 420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al 469 (496)
+..+..|.+..|.+++|++.+.++......+.. .|+.+|+...+
T Consensus 525 ~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~~------~i~~~~lp~~~ 568 (638)
T PRK11388 525 DDALARLVSYRWPGNDFELRSVIENLALSSDNG------RIRLSDLPEHL 568 (638)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCC------eecHHHCchhh
Confidence 888999999999999999988887654332221 25555554443
No 160
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.20 E-value=1.6e-11 Score=124.82 Aligned_cols=142 Identities=16% Similarity=0.169 Sum_probs=93.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc--ccCChHHH----------HHHHHHHhhhcCCcceehhhH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSEKL----------IKVLFELARHHAPSTIFLDEI 317 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~--~~G~~e~~----------l~~lf~~a~~~~p~ILfIDEI 317 (496)
+++||.||||||||++++.+|..++.+++.++++..... ..|...-. ....+..|.. .+.+|++||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 689999999999999999999999999999988655443 34432110 1112333333 3478999999
Q ss_pred HHHHhhhcCCcchhHHhhhhhhh--hhhhcc--CccccCcEEEEEeccCCcc------------cccHHHHHHhhhhhcc
Q 010975 318 DAIISQRGEARSEHEASRRLKTE--LLIQMD--GLTQSDELVFVLAATNLPW------------ELDAAMLRRLEKRILV 381 (496)
Q Consensus 318 D~L~~~r~~~~~~~~~~~~i~~~--Ll~~ld--~~~~~~~~viVIatTn~p~------------~Ld~aL~rRf~~~I~~ 381 (496)
|...++-. .....+++. .+...+ ........+.||||+|... .+++++++||...+.+
T Consensus 144 n~a~p~~~------~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~ 217 (327)
T TIGR01650 144 DAGRPDVM------FVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTL 217 (327)
T ss_pred hccCHHHH------HHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeC
Confidence 98743311 111111110 111111 1111223577899999753 3789999999877899
Q ss_pred cCCCHHHHHHHHHhhCC
Q 010975 382 PLPDTEARRAMFESLLP 398 (496)
Q Consensus 382 ~~P~~eeR~~Il~~~l~ 398 (496)
++|+.++-.+|+.....
T Consensus 218 ~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 218 NYLEHDNEAAIVLAKAK 234 (327)
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999999887643
No 161
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=3e-11 Score=125.17 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=107.1
Q ss_pred CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce-------ee-eee
Q 010975 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------FF-NIS 281 (496)
Q Consensus 210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-------~i-~v~ 281 (496)
..+..+++++|++++++.|...+.... .++.+||+||+|+|||++|+.+|+.+... .. ...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~gr-----------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGK-----------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCC-----------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 456678999999999999999885432 23569999999999999999999988441 10 001
Q ss_pred c---c-----------ccc---cc--cc------CChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhH
Q 010975 282 A---S-----------SVV---SK--WR------GDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE 332 (496)
Q Consensus 282 ~---s-----------~l~---~~--~~------G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~ 332 (496)
+ . ++. .. .. .-.-..++.+.+... .....|++|||+|.|...
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~--------- 156 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN--------- 156 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH---------
Confidence 1 0 000 00 00 001233444333322 234469999999998422
Q ss_pred HhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhh
Q 010975 333 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 396 (496)
Q Consensus 333 ~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~ 396 (496)
..+.|++.++.. +..+++|..|+.++.+.+.+++|+. .+.+++|+.++...+++..
T Consensus 157 ----aanaLLk~LEEp---p~~~~fiLit~~~~~llptIrSRc~-~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 157 ----AANAILKTLEEP---PARALFILISHSSGRLLPTIRSRCQ-PISLKPLDDDELKKALSHL 212 (351)
T ss_pred ----HHHHHHHHHhcC---CCCceEEEEECChhhccHHHHhhcc-EEEecCCCHHHHHHHHHHh
Confidence 235688888742 2334455556778888899999995 6999999999999999874
No 162
>PHA02244 ATPase-like protein
Probab=99.20 E-value=3.1e-11 Score=124.21 Aligned_cols=133 Identities=22% Similarity=0.242 Sum_probs=82.2
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc----cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS----SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 324 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s----~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r 324 (496)
..++||+||||||||++|+++|..++.+++.++.. .+.+ +..........-+-.+. ...++|+|||++.+.+..
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA 196 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH
Confidence 35799999999999999999999999999998742 1111 11111011111122222 234799999999765432
Q ss_pred cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-----------ccccHHHHHHhhhhhcccCCCHHHH
Q 010975 325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-----------WELDAAMLRRLEKRILVPLPDTEAR 389 (496)
Q Consensus 325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-----------~~Ld~aL~rRf~~~I~~~~P~~eeR 389 (496)
.. .....+...++...++.......+.+|+|+|.+ ..+++++++||. .+.+++|+..|.
T Consensus 197 q~-----~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~~E~ 266 (383)
T PHA02244 197 LI-----IINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEKIEH 266 (383)
T ss_pred HH-----HHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcHHHH
Confidence 11 111111122333444433334457889999974 358999999995 599999984443
No 163
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=1.2e-11 Score=128.75 Aligned_cols=208 Identities=22% Similarity=0.269 Sum_probs=129.2
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeeccccccc
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK 288 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~~ 288 (496)
..+++++|.+...+++.+.+... .+...+||++|++||||+.+|+.|+... +.||+.+||+.+...
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC
Confidence 34789999998888888877541 1334689999999999999999998644 568999999776542
Q ss_pred cc---------CC---hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975 289 WR---------GD---SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 356 (496)
Q Consensus 289 ~~---------G~---~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 356 (496)
.. |. ....-..+|+.|.. ++||+|||+.|.+..+ ....+.+.+.-+..+.+-......|.
T Consensus 145 ~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~~Q-----~kLl~~le~g~~~rvG~~~~~~~dVR 216 (403)
T COG1221 145 LQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPEGQ-----EKLLRVLEEGEYRRVGGSQPRPVDVR 216 (403)
T ss_pred HHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHhHH-----HHHHHHHHcCceEecCCCCCcCCCce
Confidence 11 11 11222346666665 7999999999864421 11112222222223333333455688
Q ss_pred EEeccCCc--ccccH--HHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcch
Q 010975 357 VLAATNLP--WELDA--AMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 428 (496)
Q Consensus 357 VIatTn~p--~~Ld~--aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~ 428 (496)
+|++|+.. +.+-. .+.+|.. .+.+..|+.+||.. ++++++.......+.++ ...++..++.+..
T Consensus 217 li~AT~~~l~~~~~~g~dl~~rl~-~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~-------~~~~~~a~~~L~~ 288 (403)
T COG1221 217 LICATTEDLEEAVLAGADLTRRLN-ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPL-------SVDSPEALRALLA 288 (403)
T ss_pred eeeccccCHHHHHHhhcchhhhhc-CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCC-------CCCCHHHHHHHHh
Confidence 88888754 23333 5555442 26666777777654 55555544433322211 1122456788888
Q ss_pred hhhccHHHHHHHHhhccc
Q 010975 429 EAAMQPLRRLMVLLEGRQ 446 (496)
Q Consensus 429 ~A~~~a~rR~~~~le~~~ 446 (496)
+.+.+++|++.+.++..-
T Consensus 289 y~~pGNirELkN~Ve~~~ 306 (403)
T COG1221 289 YDWPGNIRELKNLVERAV 306 (403)
T ss_pred CCCCCcHHHHHHHHHHHH
Confidence 999999999888776553
No 164
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.18 E-value=4.4e-11 Score=123.06 Aligned_cols=156 Identities=21% Similarity=0.290 Sum_probs=99.4
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-------cceee--------
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFF-------- 278 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-------~~~~i-------- 278 (496)
.|..|+|++++|..|.-.+..|. ..+++|.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~------------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPK------------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCC------------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 37899999999999876665432 2689999999999999999999876 22221
Q ss_pred -------------------------eeecccccccccCCh--HHHHH--------HHHHHhhhcCCcceehhhHHHHHhh
Q 010975 279 -------------------------NISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 279 -------------------------~v~~s~l~~~~~G~~--e~~l~--------~lf~~a~~~~p~ILfIDEID~L~~~ 323 (496)
.+..+...+...|.. +..+. .++.++ ..++|||||++.+...
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCHH
Confidence 100000001112211 01000 111222 2379999999987433
Q ss_pred hcCCcchhHHhhhhhhhhhhhccC---------cc-ccCcEEEEEeccCCcc-cccHHHHHHhhhhhcccCCCH-HHHHH
Q 010975 324 RGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRA 391 (496)
Q Consensus 324 r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~viVIatTn~p~-~Ld~aL~rRf~~~I~~~~P~~-eeR~~ 391 (496)
++..|+..|+. .. ..+.++++++|.|..+ .+++++++||...+.++.|+. ++|.+
T Consensus 147 -------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 147 -------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred -------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHH
Confidence 33444444432 11 1234577888877654 699999999999999999875 88999
Q ss_pred HHHhhC
Q 010975 392 MFESLL 397 (496)
Q Consensus 392 Il~~~l 397 (496)
|++...
T Consensus 214 IL~~~~ 219 (337)
T TIGR02030 214 IVERRT 219 (337)
T ss_pred HHHhhh
Confidence 998753
No 165
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.17 E-value=4e-11 Score=122.00 Aligned_cols=149 Identities=21% Similarity=0.260 Sum_probs=104.6
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc----------------------
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------------------- 274 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---------------------- 274 (496)
+++|.+.+..++........+ .+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----------CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 577888888887777653221 123599999999999999999999986
Q ss_pred --ceeeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc
Q 010975 275 --TTFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 348 (496)
Q Consensus 275 --~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 348 (496)
-.++.++.++..... .....++.+.+.... .+..|++|||+|.|..+ ..+.++..++
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-------------A~nallk~lE-- 134 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-------------AANALLKTLE-- 134 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHHHhc--
Confidence 467777777654421 123445555444332 23469999999999653 2355667666
Q ss_pred cccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHH
Q 010975 349 TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 394 (496)
Q Consensus 349 ~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~ 394 (496)
..+....+|.+||.++.+-+.+++|+.. +.|++|+........+
T Consensus 135 -ep~~~~~~il~~n~~~~il~tI~SRc~~-i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 -EPPKNTRFILITNDPSKILPTIRSRCQR-IRFKPPSRLEAIAWLE 178 (325)
T ss_pred -cCCCCeEEEEEcCChhhccchhhhccee-eecCCchHHHHHHHhh
Confidence 3445566788899999999999999966 8888776665555444
No 166
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.16 E-value=4.3e-11 Score=123.12 Aligned_cols=154 Identities=27% Similarity=0.353 Sum_probs=100.6
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc--cccCChH
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--KWRGDSE 294 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~--~~~G~~e 294 (496)
.++|.++++..+...+.. ..++||.||||||||++|+++|..++.+|+.+.+..... +..|...
T Consensus 25 ~~~g~~~~~~~~l~a~~~--------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLA--------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHc--------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 478888888877665533 368999999999999999999999999999999864332 2222211
Q ss_pred HHHH----HHHHHhhh--cCC--cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc-------c--ccCcEEEE
Q 010975 295 KLIK----VLFELARH--HAP--STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------T--QSDELVFV 357 (496)
Q Consensus 295 ~~l~----~lf~~a~~--~~p--~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-------~--~~~~~viV 357 (496)
-... ..+..... ... +|+++|||+...+ .+++.|+..|++. . .-....+|
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p-------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~v 157 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP-------------EVQNALLEALEERQVTVPGLTTIRLPPPFIV 157 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCH-------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEE
Confidence 1111 10110000 011 3999999987532 3445566666531 1 11245778
Q ss_pred EeccCC-----cccccHHHHHHhhhhhcccCC-CHHHHHHHHHhhC
Q 010975 358 LAATNL-----PWELDAAMLRRLEKRILVPLP-DTEARRAMFESLL 397 (496)
Q Consensus 358 IatTn~-----p~~Ld~aL~rRf~~~I~~~~P-~~eeR~~Il~~~l 397 (496)
++|+|. ...+++++++||...+.+++| +.++...+.....
T Consensus 158 iaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 158 IATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 888883 356899999999888999999 5555555555544
No 167
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.3e-11 Score=119.05 Aligned_cols=131 Identities=27% Similarity=0.408 Sum_probs=91.2
Q ss_pred hhcchHHHHHHhhhhcccccCcccccc---ccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccCCh
Q 010975 218 IKGLENAKRLLKEAVVMPIKYPKYFTG---LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGDS 293 (496)
Q Consensus 218 liG~e~vk~~L~e~l~~~~~~~~~~~~---~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G~~ 293 (496)
++|++.+|+.|.-.+..+-++-..... .--...++||.||+|+|||.||+.+|+.++.||..-++..|.. .|+|+-
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 899999999887655332211111001 1122357999999999999999999999999999999998876 688875
Q ss_pred -HHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHh-hhhhhhhhhhccCc
Q 010975 294 -EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGL 348 (496)
Q Consensus 294 -e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~ 348 (496)
+..+.+++..+. ....+|++|||||+++.+..+..-..+++ .-++.+||..++|.
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 444555655443 22348999999999988754333222222 34677899999864
No 168
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.16 E-value=5.6e-11 Score=135.93 Aligned_cols=165 Identities=23% Similarity=0.226 Sum_probs=110.2
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 288 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~---- 288 (496)
+.|+|++.+++.+.+.+......- .....|...+||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl---~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGL---EDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 368999999999999885532100 0001222348999999999999999999998 457889998776432
Q ss_pred --------ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccC
Q 010975 289 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 352 (496)
Q Consensus 289 --------~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 352 (496)
|+|..+. ..+.+..+..+++||+|||||++.+ .+.+.|+..+|.-. ..-
T Consensus 643 ~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 643 RLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred cccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCCcEEec
Confidence 3333221 1233444556779999999987632 23445666665221 112
Q ss_pred cEEEEEeccCCcc-----------------------------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCC
Q 010975 353 ELVFVLAATNLPW-----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 399 (496)
Q Consensus 353 ~~viVIatTn~p~-----------------------------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~ 399 (496)
.+.+||+|||... .+.|++++|++ ++.|.+.+.++...|+...+..
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 4577888988521 04466777886 6889999999999998887644
No 169
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.15 E-value=4e-11 Score=129.87 Aligned_cols=206 Identities=19% Similarity=0.163 Sum_probs=127.4
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhccccc-----------------Cccccccc-----cCccceeeeeCCCCChh
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK-----------------YPKYFTGL-----LSPWKGILLFGPPGTGK 262 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~-----------------~~~~~~~~-----~~~~~~vLL~GPpGtGK 262 (496)
.|+.++.+.+|.|+.|.+.+-+.+..++...-- ..+.+... .++.+-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 567778888899999999999988887733210 00111111 12334589999999999
Q ss_pred HHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHh----hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhh
Q 010975 263 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 338 (496)
Q Consensus 263 T~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a----~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~ 338 (496)
||||+.+|++.|+.+++||+++-.+.- ....++..+...- ...+|..|+|||||--. +..+
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-------------~~~V 404 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-------------RAAV 404 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------HHHH
Confidence 999999999999999999999864321 1222222222211 12568899999997432 1122
Q ss_pred hhhhhhcc-------Cccc---------cC--cEEEEEeccCCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCC
Q 010975 339 TELLIQMD-------GLTQ---------SD--ELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 339 ~~Ll~~ld-------~~~~---------~~--~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~ 398 (496)
+.++..+. |-.. +. -..-|||.||+.+ -|+|+. -|..++.|..|...-..+=|+.++.
T Consensus 405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICH 482 (877)
T ss_pred HHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHh
Confidence 22333222 1000 00 0134788899987 455554 6888899999988877777777776
Q ss_pred CCCCCCC-CCcceeeecccCCcCCchhhcchhhh
Q 010975 399 SQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 431 (496)
Q Consensus 399 ~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~A~ 431 (496)
...+..+ ..+..|++.++ .||+..++...
T Consensus 483 rE~mr~d~~aL~~L~el~~----~DIRsCINtLQ 512 (877)
T KOG1969|consen 483 RENMRADSKALNALCELTQ----NDIRSCINTLQ 512 (877)
T ss_pred hhcCCCCHHHHHHHHHHhc----chHHHHHHHHH
Confidence 6555422 12333444333 57777666443
No 170
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=8.5e-11 Score=122.44 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=109.2
Q ss_pred CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceee-----------
Q 010975 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF----------- 278 (496)
Q Consensus 210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i----------- 278 (496)
..+..+++|+|++.+++.|.+.+.... .+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~r-----------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGR-----------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCC-----------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 356678999999999999999886532 3457999999999999999999998832100
Q ss_pred ----eeec-----------cccc--c-c--ccC------ChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCc
Q 010975 279 ----NISA-----------SSVV--S-K--WRG------DSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEAR 328 (496)
Q Consensus 279 ----~v~~-----------s~l~--~-~--~~G------~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~ 328 (496)
.-.| .++. . . ..+ -.-..++.+.+.+. ...+.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 0000 0000 0 0 000 01233444444333 24567999999998732
Q ss_pred chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975 329 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 397 (496)
Q Consensus 329 ~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l 397 (496)
...+.|++.++. ....+++|.+|+.++.+.+.+++|+.. +.++.|+.++..+++....
T Consensus 156 -------~aanaLLK~LEe---pp~~~~~IL~t~~~~~llpti~SRc~~-i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 156 -------NAANALLKVLEE---PPARSLFLLVSHAPARLLPTIRSRCRK-LRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred -------HHHHHHHHHHhc---CCCCeEEEEEECCchhchHHhhccceE-EECCCCCHHHHHHHHHHhc
Confidence 234668888873 333455667888888899999999965 9999999999999888754
No 171
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.15 E-value=1.5e-10 Score=122.08 Aligned_cols=142 Identities=20% Similarity=0.275 Sum_probs=87.6
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce-------eeeeec----c
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------FFNISA----S 283 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-------~i~v~~----s 283 (496)
++++.+.+...+.+...+.. .++++|+||||||||++|+.+|..++.. .+.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~~--------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 45677777777777666532 3689999999999999999999988431 222221 1
Q ss_pred cccccc----cCC--hHHHHHHHHHHhhh--cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc---------
Q 010975 284 SVVSKW----RGD--SEKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD--------- 346 (496)
Q Consensus 284 ~l~~~~----~G~--~e~~l~~lf~~a~~--~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld--------- 346 (496)
++...+ .|- ..+.+.++...|.. ..|.+|+||||+....++ +..+++..++
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccc
Confidence 222111 110 11233445555554 357899999998754332 1111111111
Q ss_pred ----------CccccCcEEEEEeccCCcc----cccHHHHHHhhhhhcccC
Q 010975 347 ----------GLTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPL 383 (496)
Q Consensus 347 ----------~~~~~~~~viVIatTn~p~----~Ld~aL~rRf~~~I~~~~ 383 (496)
..-.-+.++.||||+|..+ .+|.|++|||.. +.+.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe-EEecC
Confidence 0112356799999999987 699999999966 66654
No 172
>PRK09087 hypothetical protein; Validated
Probab=99.14 E-value=7.1e-11 Score=115.27 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=80.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~ 329 (496)
+.++|+||+|+|||||++++++..+..++ +...+... ++..... .+|+|||++.+...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~------ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD------ 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC------
Confidence 35999999999999999999988765533 33222211 1111111 58999999865211
Q ss_pred hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc--c-ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 330 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--E-LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 330 ~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~--~-Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
..+|+..++.....+. .+|++++..|. . ..+.+++|+. ..+.+..|+.++|.++++..+.....
T Consensus 103 --------~~~lf~l~n~~~~~g~-~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 103 --------ETGLFHLINSVRQAGT-SLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred --------HHHHHHHHHHHHhCCC-eEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1235555544433343 44555555553 2 3688999994 66889999999999999999876543
No 173
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.14 E-value=2.2e-11 Score=109.20 Aligned_cols=111 Identities=27% Similarity=0.337 Sum_probs=66.4
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc------cccCC--hHHHHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS------KWRGD--SEKLIKVLFELARHHAPSTIFLDEIDAIIS 322 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~------~~~G~--~e~~l~~lf~~a~~~~p~ILfIDEID~L~~ 322 (496)
+|||+||||||||++|+.+|+.++.+++.++++.... .+.-. ........+..+. ..+++++|||++...+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCCH
Confidence 5899999999999999999999999999888765332 22110 0000000000011 1357999999987643
Q ss_pred hhcCCcchhHHhhhhhhhhhhhccCc----------cccCc------EEEEEeccCCcc----cccHHHHHHh
Q 010975 323 QRGEARSEHEASRRLKTELLIQMDGL----------TQSDE------LVFVLAATNLPW----ELDAAMLRRL 375 (496)
Q Consensus 323 ~r~~~~~~~~~~~~i~~~Ll~~ld~~----------~~~~~------~viVIatTn~p~----~Ld~aL~rRf 375 (496)
. +...|+..++.- ..... .+.+|+|+|... .+++++++||
T Consensus 80 ~-------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 80 E-------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp H-------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred H-------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 2 222233333211 00111 378999999998 7999999998
No 174
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.13 E-value=7.4e-11 Score=135.03 Aligned_cols=166 Identities=23% Similarity=0.273 Sum_probs=112.5
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 288 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~---- 288 (496)
+.|+|++++++.|.+.+......- .....|...+||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl---~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL---KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc---cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 358999999999998885432100 0011233458999999999999999999987 467888888776421
Q ss_pred --------ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccC
Q 010975 289 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSD 352 (496)
Q Consensus 289 --------~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~ 352 (496)
|+|..+ ...+.+.++..+.+||+|||+|++.+ .+.+.|+..++.- ....
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCH-------------HHHHHHHHHhccCceecCCCcEEec
Confidence 222211 12344555555568999999998743 2445666666632 1123
Q ss_pred cEEEEEeccCCccc-------------------------------------ccHHHHHHhhhhhcccCCCHHHHHHHHHh
Q 010975 353 ELVFVLAATNLPWE-------------------------------------LDAAMLRRLEKRILVPLPDTEARRAMFES 395 (496)
Q Consensus 353 ~~viVIatTn~p~~-------------------------------------Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~ 395 (496)
.+.+||+|||.... +.|.++.|++.++.|.+.+.++..+|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 45778889874311 23466778988899999999999999887
Q ss_pred hCCC
Q 010975 396 LLPS 399 (496)
Q Consensus 396 ~l~~ 399 (496)
.+..
T Consensus 731 ~l~~ 734 (821)
T CHL00095 731 MLKN 734 (821)
T ss_pred HHHH
Confidence 7753
No 175
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.13 E-value=4.9e-11 Score=127.30 Aligned_cols=200 Identities=21% Similarity=0.258 Sum_probs=127.9
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc-
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 289 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~- 289 (496)
.+.+++|.....+.+.+.+.... ....+++|+|++||||+++|++++... +.+|+.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888887777777654321 223579999999999999999999876 4689999998763221
Q ss_pred ----cC----ChHHH---HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------ccc
Q 010975 290 ----RG----DSEKL---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQ 350 (496)
Q Consensus 290 ----~G----~~e~~---l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~ 350 (496)
.| ...+. ....+..+ ..++||||||+.|... ++..|+..++. ...
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~ 270 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGREE 270 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCCce
Confidence 11 00000 00112222 3479999999998544 22334444432 112
Q ss_pred cCcEEEEEeccCCc-------ccccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975 351 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS 419 (496)
Q Consensus 351 ~~~~viVIatTn~p-------~~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s 419 (496)
....+.+|++|+.. ..+.+.|..|+.. +.+..|...+|.+ ++++++...... ..+...+++
T Consensus 271 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~lPpLr~R~~Di~~l~~~~l~~~~~~-------~~~~~~~~~ 342 (445)
T TIGR02915 271 IPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAE-ISITIPPLRSRDGDAVLLANAFLERFARE-------LKRKTKGFT 342 (445)
T ss_pred eeeceEEEEecCCCHHHHHHcCCccHHHHHHhcc-ceecCCCchhchhhHHHHHHHHHHHHHHH-------hCCCCCCCC
Confidence 22346778787765 2355667778855 7888888888876 445554432211 111234578
Q ss_pred CCchhhcchhhhccHHHHHHHHhhcccc
Q 010975 420 GSDIRLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
+..++.|.++.|.++++++.+.++....
T Consensus 343 ~~a~~~L~~~~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 343 DDALRALEAHAWPGNVRELENKVKRAVI 370 (445)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 8889999999999999999888876554
No 176
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.11 E-value=1.3e-10 Score=123.38 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=92.7
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeecc-cccccccCC
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS-SVVSKWRGD 292 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~s-~l~~~~~G~ 292 (496)
..++|.+++++.+...+.. ..++||.||||||||++|++++..++. +|..+.+. ....+..|.
T Consensus 20 ~~i~gre~vI~lll~aala--------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHHcc--------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 4699999999998876632 368999999999999999999998743 34433322 111222222
Q ss_pred h-HHHH--HHHHHHhh-hc--CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc-------ccCcEEEEEe
Q 010975 293 S-EKLI--KVLFELAR-HH--APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------QSDELVFVLA 359 (496)
Q Consensus 293 ~-e~~l--~~lf~~a~-~~--~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------~~~~~viVIa 359 (496)
. -... ..-|.... +. ...+||+|||+.+. ..+++.|+..|+.-. ..-...++++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 1 0000 11121111 10 22489999997653 334566666663221 1222234455
Q ss_pred ccCCccc---ccHHHHHHhhhhhcccCCC-HHHHHHHHHhh
Q 010975 360 ATNLPWE---LDAAMLRRLEKRILVPLPD-TEARRAMFESL 396 (496)
Q Consensus 360 tTn~p~~---Ld~aL~rRf~~~I~~~~P~-~eeR~~Il~~~ 396 (496)
+||...+ ..+++.+||...+.+++|+ .++-.+++...
T Consensus 153 ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 5574422 3359999998889999997 45557777654
No 177
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.10 E-value=3.2e-10 Score=107.14 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=87.1
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcce------------------------eeeeecccccccccCChHHHHHHHHHHh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFELA 304 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a 304 (496)
+..+||+||+|+|||++|+.+++.+... +..+.... . ......++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHHH
Confidence 3579999999999999999999987432 11111100 0 01224555555555
Q ss_pred hh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhc
Q 010975 305 RH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRIL 380 (496)
Q Consensus 305 ~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~ 380 (496)
.. ....|++|||+|.+... ..+.|+..++.. +....+|.+|+.+..+.+++++|+. .+.
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i~sr~~-~~~ 151 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLEEP---PPNTLFILITPSPEKLLPTIRSRCQ-VLP 151 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhcCC---CCCeEEEEEECChHhChHHHHhhcE-Eee
Confidence 43 23469999999998432 235577777642 2334566667777899999999995 599
Q ss_pred ccCCCHHHHHHHHHhh
Q 010975 381 VPLPDTEARRAMFESL 396 (496)
Q Consensus 381 ~~~P~~eeR~~Il~~~ 396 (496)
+++|+.++...+++..
T Consensus 152 ~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ 167 (188)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 9999999998888775
No 178
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.09 E-value=1.6e-10 Score=132.84 Aligned_cols=167 Identities=22% Similarity=0.262 Sum_probs=111.5
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 288 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~---- 288 (496)
..|+|++.+++.+.+.+...... ......|...+||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 46999999999999988643210 00001233569999999999999999999987 568999998776432
Q ss_pred -ccCChHH-----HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccCcE
Q 010975 289 -WRGDSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 354 (496)
Q Consensus 289 -~~G~~e~-----~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~ 354 (496)
..|...+ ....+....+....+||+||||+++.+ .+.+.|++.++.-. ..-.+
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~-------------~v~~~Ll~~l~~g~l~d~~g~~vd~rn 708 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP-------------DVFNVLLQVLDDGRLTDGQGRTVDFRN 708 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH-------------HHHHHHHHHHhcCceecCCCeEEecCC
Confidence 1111111 012233344445557999999998743 24455666664221 11245
Q ss_pred EEEEeccCCccc-------------------------ccHHHHHHhhhhhcccCCCHHHHHHHHHhhCC
Q 010975 355 VFVLAATNLPWE-------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 355 viVIatTn~p~~-------------------------Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~ 398 (496)
.+||+|||.... +.|.|+.|++.++.|.+++.++...|+...+.
T Consensus 709 ~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 709 TVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred cEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHH
Confidence 678899987311 33567779999999999999999999887764
No 179
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.09 E-value=1.2e-10 Score=108.52 Aligned_cols=121 Identities=25% Similarity=0.335 Sum_probs=75.1
Q ss_pred hhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc-----c
Q 010975 218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-----W 289 (496)
Q Consensus 218 liG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~-----~ 289 (496)
++|.+...+++.+.+..... .+.+|||+|++||||+.+|++|++.. +.||+.++|+.+..+ .
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 46777777777776644332 23689999999999999999999977 579999999876432 1
Q ss_pred cCCh-------HHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc--------CccccCcE
Q 010975 290 RGDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD--------GLTQSDEL 354 (496)
Q Consensus 290 ~G~~-------e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld--------~~~~~~~~ 354 (496)
.|.. ......+++.|.. ++||||||+.|.... +..|+..++ +......+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~~-------------Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPEL-------------QAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HHH-------------HHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHHHH-------------HHHHHHHHhhchhcccccccccccc
Confidence 1111 0111246666666 899999999986542 233444443 22223346
Q ss_pred EEEEeccCCc
Q 010975 355 VFVLAATNLP 364 (496)
Q Consensus 355 viVIatTn~p 364 (496)
+.||++|+.+
T Consensus 135 ~RiI~st~~~ 144 (168)
T PF00158_consen 135 VRIIASTSKD 144 (168)
T ss_dssp EEEEEEESS-
T ss_pred ceEEeecCcC
Confidence 8888888865
No 180
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.08 E-value=1.1e-10 Score=101.66 Aligned_cols=127 Identities=31% Similarity=0.427 Sum_probs=79.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcce---eeeeeccccccc--------------ccCChHHHHHHHHHHhhhcCCcce
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSK--------------WRGDSEKLIKVLFELARHHAPSTI 312 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~---~i~v~~s~l~~~--------------~~G~~e~~l~~lf~~a~~~~p~IL 312 (496)
.+++|+||||||||++++.+|..+... ++.++++..... .........+.+++.++...+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 679999999999999999999999765 788877654321 123345566778888888778999
Q ss_pred ehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC-cccccHHHHHHhhhhhcccCC
Q 010975 313 FLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWELDAAMLRRLEKRILVPLP 384 (496)
Q Consensus 313 fIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~-p~~Ld~aL~rRf~~~I~~~~P 384 (496)
+|||++.+.......... .......... ........+|+++|. ....+..+.+|++..+.+..+
T Consensus 83 iiDei~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQEALLL----LLEELRLLLL----LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHHHHHHH----hhhhhHHHHH----HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999885442111000 0000000000 112233557778875 334555666677766665443
No 181
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=3.5e-10 Score=116.43 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=103.8
Q ss_pred ccchhhc-chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce----------------
Q 010975 214 KWESIKG-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------- 276 (496)
Q Consensus 214 ~l~dliG-~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------------- 276 (496)
.|++|+| ++.+++.|...+... ..++.+||+||+|+||+++|+++|+.+..+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 3788988 899999999887432 234568999999999999999999987322
Q ss_pred --------eeeeecccccccccCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhh
Q 010975 277 --------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 344 (496)
Q Consensus 277 --------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ 344 (496)
+..+... +.. -.-..++.+.+.+. .....|++|||+|.+.. ...+.|++.
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~ 133 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-------------SAANSLLKF 133 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-------------HHHHHHHHH
Confidence 1111110 000 11234555554433 12345999999998842 234678888
Q ss_pred ccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHh
Q 010975 345 MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 395 (496)
Q Consensus 345 ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~ 395 (496)
++. .+..+++|.+|+.+..+.+++++|+.. +.++.|+.++....++.
T Consensus 134 LEE---Pp~~~~~Il~t~~~~~ll~TIrSRc~~-i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 134 LEE---PSGGTTAILLTENKHQILPTILSRCQV-VEFRPLPPESLIQRLQE 180 (329)
T ss_pred hcC---CCCCceEEEEeCChHhCcHHHHhhcee-eeCCCCCHHHHHHHHHH
Confidence 873 344566667888888999999999965 99999999888777764
No 182
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.07 E-value=2.8e-10 Score=114.77 Aligned_cols=132 Identities=22% Similarity=0.168 Sum_probs=78.0
Q ss_pred CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC------------cccccHHHHHHhh
Q 010975 309 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL------------PWELDAAMLRRLE 376 (496)
Q Consensus 309 p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~------------p~~Ld~aL~rRf~ 376 (496)
|+||||||+|.|-- ..++.|-..|+ ..-.++ ||.+||+ |+.++..|++|+
T Consensus 292 pGVLFIDEvHmLDI-------------E~FsFlnrAlE---se~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHMLDI-------------ECFSFLNRALE---SELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhhhH-------------HHHHHHHHHhh---cccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 78999999988721 12233333333 233334 4455653 456999999999
Q ss_pred hhhcccCCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCC
Q 010975 377 KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 455 (496)
Q Consensus 377 ~~I~~~~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~ 455 (496)
.+|...+++.++.++|++..+.......+ ..++.++.....-|-+.--+|+.-|...|.+| +
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------g----------- 416 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------G----------- 416 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------C-----------
Confidence 55889999999999999998877665532 22444444333322222222222222222222 1
Q ss_pred CCCCCCchhHHHHhhcCCCCc
Q 010975 456 QIGPIRPEDVEIALKNTRPSA 476 (496)
Q Consensus 456 ~~~~It~eDf~~Al~~~~Ps~ 476 (496)
...|..+|+++|-.-+--+.
T Consensus 417 -~~~V~~~dVe~a~~lF~D~k 436 (450)
T COG1224 417 -SKRVEVEDVERAKELFLDVK 436 (450)
T ss_pred -CCeeehhHHHHHHHHHhhHH
Confidence 12478999999987765443
No 183
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.07 E-value=2.1e-10 Score=123.32 Aligned_cols=216 Identities=22% Similarity=0.224 Sum_probs=136.2
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc-
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 289 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~- 289 (496)
.+.+++|.....+.+.+.+.... .....++|.|++|||||++|++++... +.+|+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 45678998887777776654321 223579999999999999999999987 5789999998763221
Q ss_pred ----cCChHH-------HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------ccc
Q 010975 290 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQ 350 (496)
Q Consensus 290 ----~G~~e~-------~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~ 350 (496)
.|...+ .....++.+ ..+.|||||+|.|.... +..|+..++. ...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~-------------q~~L~~~l~~~~~~~~~~~~~ 269 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDV-------------QTRLLRVLADGQFYRVGGYAP 269 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHH-------------HHHHHHHHhcCcEEeCCCCCe
Confidence 111000 000112222 24799999999885442 2334444432 112
Q ss_pred cCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975 351 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS 419 (496)
Q Consensus 351 ~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s 419 (496)
....+.+|+||+..- .+.+.|..|+.. +.+..|...+|.+ ++++++...... ......+++
T Consensus 270 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~~PpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~ 341 (469)
T PRK10923 270 VKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV-IRVHLPPLRERREDIPRLARHFLQVAARE-------LGVEAKLLH 341 (469)
T ss_pred EEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcc-eeecCCCcccchhhHHHHHHHHHHHHHHH-------cCCCCCCcC
Confidence 223467888887652 356778888854 6777777766665 555665432211 112234678
Q ss_pred CCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975 420 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 469 (496)
Q Consensus 420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al 469 (496)
+..+..|.++.|.++++++.+.++......... .|+.+|+...+
T Consensus 342 ~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~~~------~i~~~~l~~~~ 385 (469)
T PRK10923 342 PETEAALTRLAWPGNVRQLENTCRWLTVMAAGQ------EVLIQDLPGEL 385 (469)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC------cccHHHCcHhh
Confidence 888999999999999999998887665443332 25666664333
No 184
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.06 E-value=2.8e-10 Score=130.50 Aligned_cols=163 Identities=23% Similarity=0.301 Sum_probs=109.4
Q ss_pred chhhcchHHHHHHhhhhcccc---cCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc-
Q 010975 216 ESIKGLENAKRLLKEAVVMPI---KYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK- 288 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~---~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~- 288 (496)
+.++|++.+++.+.+.+.... ..+ ..|...+||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~------~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~ 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDP------NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCC------CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh
Confidence 358999999999988885432 111 1122468999999999999999999987 457888988776432
Q ss_pred -----------ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------c
Q 010975 289 -----------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------T 349 (496)
Q Consensus 289 -----------~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~ 349 (496)
|+|..+. ..+....+....+||+|||++.+.+. +.+.|+..++.- .
T Consensus 642 ~~~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEieka~~~-------------v~~~Ll~ile~g~l~d~~gr~ 706 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEKAHPD-------------VFNILLQVLDDGRLTDGQGRT 706 (857)
T ss_pred hHHHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhhCCHH-------------HHHHHHHHHhhCceecCCceE
Confidence 1121111 11223333444589999999876422 345566665421 1
Q ss_pred ccCcEEEEEeccCCcc-------------------------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCC
Q 010975 350 QSDELVFVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 399 (496)
Q Consensus 350 ~~~~~viVIatTn~p~-------------------------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~ 399 (496)
....+.+||+|||... .+.|+++.|++.++.|.+++.++...|++.++..
T Consensus 707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 1123456888998631 1446888999988999999999999998887754
No 185
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=3.4e-10 Score=115.75 Aligned_cols=155 Identities=14% Similarity=0.139 Sum_probs=106.7
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee----------eeeecc
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF----------FNISAS 283 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~----------i~v~~s 283 (496)
.|++|+|++.+++.|.+.+.... .+.++||+||+|+||+++|.++|+.+...- ...+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~r-----------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNR-----------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCC-----------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 48899999999999999885432 236899999999999999999999873211 011111
Q ss_pred ccc---------cc--------ccC-------C-hHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHh
Q 010975 284 SVV---------SK--------WRG-------D-SEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEAS 334 (496)
Q Consensus 284 ~l~---------~~--------~~G-------~-~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~ 334 (496)
++. ++ ..| . .-..++.+.+.+.. ....|++||++|.|..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 111 00 000 0 01234555444432 2346999999998842
Q ss_pred hhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975 335 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 397 (496)
Q Consensus 335 ~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l 397 (496)
...+.|++.++... . .++|..|+.++.+-+++++|+.. +.|+.++.++..++++...
T Consensus 139 -~aaNaLLK~LEEPp---~-~~fILi~~~~~~Ll~TI~SRcq~-i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 139 -AAANALLKTLEEPG---N-GTLILIAPSPESLLPTIVSRCQI-IPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred -HHHHHHHHHHhCCC---C-CeEEEEECChHhCcHHHHhhceE-EecCCCCHHHHHHHHHHhh
Confidence 23467888887532 2 34566778889999999999965 9999999999999888764
No 186
>PRK15115 response regulator GlrR; Provisional
Probab=99.05 E-value=5.9e-10 Score=118.96 Aligned_cols=213 Identities=22% Similarity=0.263 Sum_probs=128.6
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccccc---
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR--- 290 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~--- 290 (496)
.++|......++.+.+.... .....++|+|++|||||++|++++... +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 46776665555554432221 122479999999999999999999876 57899999987633211
Q ss_pred --CChHH-------HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--------ccccCc
Q 010975 291 --GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQSDE 353 (496)
Q Consensus 291 --G~~e~-------~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~~~~ 353 (496)
|...+ ....++..+ ..++|||||||.|.... +..|+..++. ......
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~-------------q~~L~~~l~~~~~~~~g~~~~~~~ 268 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDMPAPL-------------QVKLLRVLQERKVRPLGSNRDIDI 268 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccCCHHH-------------HHHHHHHHhhCCEEeCCCCceeee
Confidence 10000 000112222 24799999999985442 2334444432 111223
Q ss_pred EEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcCCc
Q 010975 354 LVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSD 422 (496)
Q Consensus 354 ~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~~d 422 (496)
.+.+|+||+.+- .+.+.+..|+.. +.+..|...+|.+ ++++++...... ......++++..
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~-~~i~lPpLr~R~eDi~~l~~~~l~~~~~~-------~~~~~~~~~~~a 340 (444)
T PRK15115 269 DVRIISATHRDLPKAMARGEFREDLYYRLNV-VSLKIPALAERTEDIPLLANHLLRQAAER-------HKPFVRAFSTDA 340 (444)
T ss_pred eEEEEEeCCCCHHHHHHcCCccHHHHHhhce-eeecCCChHhccccHHHHHHHHHHHHHHH-------hCCCCCCcCHHH
Confidence 577888887641 244555566654 7788898888875 445555432111 111234678889
Q ss_pred hhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975 423 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 469 (496)
Q Consensus 423 I~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al 469 (496)
+..+.++.|.++++++.+.++......+.. .|+.+|+...+
T Consensus 341 ~~~L~~~~WpgNvreL~~~i~~~~~~~~~~------~i~~~~l~~~~ 381 (444)
T PRK15115 341 MKRLMTASWPGNVRQLVNVIEQCVALTSSP------VISDALVEQAL 381 (444)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhCCCC------ccChhhhhhhh
Confidence 999999999999999998887654433222 25566654433
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.9e-10 Score=117.10 Aligned_cols=144 Identities=24% Similarity=0.314 Sum_probs=110.5
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc-cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 327 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s-~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~ 327 (496)
-.++||+||||+|||+||-.+|...+.||+.+-.. ++.+-...+--..++.+|+.|.+..-+||++|+|+.|.. ..
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD---~v 614 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD---YV 614 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc---cc
Confidence 35799999999999999999999999999987543 333221112224578899999998889999999999963 22
Q ss_pred cchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH-HHHHHhhhhhcccCCCH-HHHHHHHHh
Q 010975 328 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEKRILVPLPDT-EARRAMFES 395 (496)
Q Consensus 328 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~-aL~rRf~~~I~~~~P~~-eeR~~Il~~ 395 (496)
+-....++.++.+|+..+....+.+.+.+|++||...+-+.. .+.+.|+..+.+|..+. ++..+++..
T Consensus 615 pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 344567788888898888877777888999999988765543 57778998888887654 666666654
No 188
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=6.4e-10 Score=114.35 Aligned_cols=130 Identities=19% Similarity=0.282 Sum_probs=92.0
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhcce------------------------eeeeecccccccccCChHHHHHHHHHH
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 303 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------~i~v~~s~l~~~~~G~~e~~l~~lf~~ 303 (496)
.++.+||+||+|+|||++|+++|+.+... ++.+...+- ++ .-.-..++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 34679999999999999999999988432 111211000 00 0123456665555
Q ss_pred hhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhh
Q 010975 304 ARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 379 (496)
Q Consensus 304 a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I 379 (496)
+.. ....|++||++|.|.. ...+.|++.++. .+..+++|.+|+.++.+.+.+++|+.. +
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~-------------~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SRc~~-~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNR-------------NAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSRCQQ-Q 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCCH-------------HHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhhcee-e
Confidence 443 3346999999999843 344778888873 345577788999999999999999976 9
Q ss_pred cccCCCHHHHHHHHHhhC
Q 010975 380 LVPLPDTEARRAMFESLL 397 (496)
Q Consensus 380 ~~~~P~~eeR~~Il~~~l 397 (496)
.|++|+.++....+....
T Consensus 161 ~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 161 ACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eCCCcCHHHHHHHHHHhc
Confidence 999999999888877653
No 189
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.01 E-value=1.4e-10 Score=108.42 Aligned_cols=113 Identities=25% Similarity=0.297 Sum_probs=74.0
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcc----eeeeeecccccccccCChHHHHHHHHHHh----hhcCCcceehhhHHHH
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKT----TFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAI 320 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~----~~i~v~~s~l~~~~~G~~e~~l~~lf~~a----~~~~p~ILfIDEID~L 320 (496)
..++||.||+|||||.+|+++|+.+.. +++.++++++.... ..+..+..++..+ .....+||||||||+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 357999999999999999999999996 99999999887611 0111222222211 1112259999999999
Q ss_pred HhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccCcEEEEEeccCCcc
Q 010975 321 ISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPW 365 (496)
Q Consensus 321 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIatTn~p~ 365 (496)
.+.. ..........+++.|+..+++-. -.-.++++|+|+|--.
T Consensus 81 ~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPSN--SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHTT--TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc--cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 7641 12223333466778888876321 2234588999998764
No 190
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.01 E-value=5.8e-10 Score=111.29 Aligned_cols=167 Identities=18% Similarity=0.138 Sum_probs=114.2
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce------e
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------F 277 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~------~ 277 (496)
-.|.+++++..++|+++.+++...+.++...+.. .|+|+|||||||||+...+.|..+-.+ +
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~l------------Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~ 96 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGL------------PHLLFYGPPGTGKTSTILANARDFYSPHPTTSML 96 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCCCC------------CcccccCCCCCCCCCchhhhhhhhcCCCCchhHH
Confidence 3567788888899999999999999988544321 499999999999999999999988542 3
Q ss_pred eeeecccccccccCChHHHHHHHHHHhhh-------cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc
Q 010975 278 FNISASSVVSKWRGDSEKLIKVLFELARH-------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 350 (496)
Q Consensus 278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~-------~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~ 350 (496)
..+++++-.+.. ..+.-...|...+. ..+..+++||+|.+..+.+ ++|-..++.
T Consensus 97 lelnaSd~rgid---~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-------------nALRRviek--- 157 (360)
T KOG0990|consen 97 LELNASDDRGID---PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-------------NALRRVIEK--- 157 (360)
T ss_pred HHhhccCccCCc---chHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH-------------HHHHHHHHH---
Confidence 344444433321 11222233444442 2567999999999975532 233333332
Q ss_pred cCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC
Q 010975 351 SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 402 (496)
Q Consensus 351 ~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~ 402 (496)
...++.++..+|.+..+.+++++||.+ +.+.+.+...-...+.+++.....
T Consensus 158 ~t~n~rF~ii~n~~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 158 YTANTRFATISNPPQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred hccceEEEEeccChhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcchh
Confidence 233355566789999999999999987 777777777777777777655443
No 191
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.9e-09 Score=108.25 Aligned_cols=85 Identities=22% Similarity=0.373 Sum_probs=62.6
Q ss_pred CcceehhhHHHHHhhhcCCcchhHHhh-hhhhhhhhhccCccc-------cCcEEEEEecc----CCcccccHHHHHHhh
Q 010975 309 PSTIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLE 376 (496)
Q Consensus 309 p~ILfIDEID~L~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~~-------~~~~viVIatT----n~p~~Ld~aL~rRf~ 376 (496)
.+|+||||||+++...+.+.. +.++ -++-.||-.++|-.- +..++++||+. ..|.+|-|.|.-||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc
Confidence 469999999999877542221 3333 355667777776432 23568888775 567788899999999
Q ss_pred hhhcccCCCHHHHHHHHHh
Q 010975 377 KRILVPLPDTEARRAMFES 395 (496)
Q Consensus 377 ~~I~~~~P~~eeR~~Il~~ 395 (496)
..+++...+.++-..||..
T Consensus 329 IRVEL~~Lt~~Df~rILte 347 (444)
T COG1220 329 IRVELDALTKEDFERILTE 347 (444)
T ss_pred eEEEcccCCHHHHHHHHcC
Confidence 9999999999998887753
No 192
>PRK04132 replication factor C small subunit; Provisional
Probab=98.98 E-value=8.4e-10 Score=124.73 Aligned_cols=129 Identities=19% Similarity=0.145 Sum_probs=98.5
Q ss_pred ceeeeeC--CCCChhHHHHHHHHhhh-----cceeeeeecccccccccCChHHHHHHHHHHhhhc------CCcceehhh
Q 010975 250 KGILLFG--PPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHH------APSTIFLDE 316 (496)
Q Consensus 250 ~~vLL~G--PpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~------~p~ILfIDE 316 (496)
-+-+..| |++.||||+|+++|+++ +.+++++|+++..+ -..++.++..+... +..|++|||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 3556779 99999999999999998 56899999988532 23455555443322 235999999
Q ss_pred HHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhh
Q 010975 317 IDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 396 (496)
Q Consensus 317 ID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~ 396 (496)
+|.|.. ..++.|+..|+. .+..+.+|.+||++..+.+++++||.. +.|+.|+.++....++..
T Consensus 639 aD~Lt~-------------~AQnALLk~lEe---p~~~~~FILi~N~~~kIi~tIrSRC~~-i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 639 ADALTQ-------------DAQQALRRTMEM---FSSNVRFILSCNYSSKIIEPIQSRCAI-FRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cccCCH-------------HHHHHHHHHhhC---CCCCeEEEEEeCChhhCchHHhhhceE-EeCCCCCHHHHHHHHHHH
Confidence 999843 234668888873 344577888999999999999999955 999999999999888887
Q ss_pred CCCCC
Q 010975 397 LPSQT 401 (496)
Q Consensus 397 l~~~~ 401 (496)
+....
T Consensus 702 ~~~Eg 706 (846)
T PRK04132 702 AENEG 706 (846)
T ss_pred HHhcC
Confidence 76543
No 193
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.97 E-value=1.3e-09 Score=120.27 Aligned_cols=132 Identities=19% Similarity=0.243 Sum_probs=88.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeecccccccccCChH--HHHH--------HHHHHhhhcCCcceehhhH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSKWRGDSE--KLIK--------VLFELARHHAPSTIFLDEI 317 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~s~l~~~~~G~~e--~~l~--------~lf~~a~~~~p~ILfIDEI 317 (496)
.||||.|+||||||++|+++++.+.. +|+.+......+...|... ..+. ..+.++ ..++||||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccch
Confidence 68999999999999999999998854 5888875433333333320 0000 011112 2269999999
Q ss_pred HHHHhhhcCCcchhHHhhhhhhhhhhhccCcc----------ccCcEEEEEeccCCcc---cccHHHHHHhhhhhcccC-
Q 010975 318 DAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW---ELDAAMLRRLEKRILVPL- 383 (496)
Q Consensus 318 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIatTn~p~---~Ld~aL~rRf~~~I~~~~- 383 (496)
+.+... +++.|+..|+.-. .....+.||+|+|..+ .+.+++++||...+.+..
T Consensus 94 ~rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~ 160 (589)
T TIGR02031 94 NLLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDV 160 (589)
T ss_pred hhCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCC
Confidence 998543 3445555554211 1123577888888765 699999999998776654
Q ss_pred CCHHHHHHHHHhhC
Q 010975 384 PDTEARRAMFESLL 397 (496)
Q Consensus 384 P~~eeR~~Il~~~l 397 (496)
|+.++|.+|++..+
T Consensus 161 ~~~~er~eil~~~~ 174 (589)
T TIGR02031 161 ASQDLRVEIVRRER 174 (589)
T ss_pred CCHHHHHHHHHHHH
Confidence 67888999998876
No 194
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.95 E-value=6.4e-10 Score=120.10 Aligned_cols=145 Identities=28% Similarity=0.355 Sum_probs=89.1
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----c--------------
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----K-------------- 274 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----~-------------- 274 (496)
..|+|+.|++.+++.+.-.+. ...+++|.||||||||++++.++..+ +
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 368899999999887765542 23679999999999999999999754 1
Q ss_pred ----------ceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhh
Q 010975 275 ----------TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 344 (496)
Q Consensus 275 ----------~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ 344 (496)
.||...+++.......|.....-...+..|.. ++|||||++.+.. .+++.|+..
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~-------------~~~~~L~~~ 318 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKR-------------SVLDALREP 318 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCH-------------HHHHHHHHH
Confidence 12222221111111111110000112333333 7999999988743 233444444
Q ss_pred ccCcc----------ccCcEEEEEeccCCc------c-----------------cccHHHHHHhhhhhcccCCCHH
Q 010975 345 MDGLT----------QSDELVFVLAATNLP------W-----------------ELDAAMLRRLEKRILVPLPDTE 387 (496)
Q Consensus 345 ld~~~----------~~~~~viVIatTn~p------~-----------------~Ld~aL~rRf~~~I~~~~P~~e 387 (496)
|+.-. .....+.+|+++|.- . .++.+|++||+..+.++.++.+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 43211 122457788888852 1 4888999999999999887755
No 195
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.95 E-value=3.8e-09 Score=105.96 Aligned_cols=201 Identities=19% Similarity=0.270 Sum_probs=114.2
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecccc
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSV 285 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~l 285 (496)
|=+.-....+.++|.+.+..|.. ....++||+|++|.|||++++.+...- ..|++.+.+..-
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~---------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKR---------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE 106 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcc---------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC
Confidence 44444444555566666655532 123589999999999999999999754 245666654221
Q ss_pred cc--------------ccc--CChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc
Q 010975 286 VS--------------KWR--GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 349 (496)
Q Consensus 286 ~~--------------~~~--G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 349 (496)
.+ .+. ....+.-..+....+..++.+|+|||+|.+...... ..+. +++.+..+.
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~------~qr~----~Ln~LK~L~ 176 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR------KQRE----FLNALKFLG 176 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH------HHHH----HHHHHHHHh
Confidence 11 111 112223333445556667789999999998644211 1122 233332222
Q ss_pred ccCcEEEEEeccCCc---ccccHHHHHHhhhhhcccC-CCHHHHHHHHHhhCCCCCCCCCCCc------ceeeecccCCc
Q 010975 350 QSDELVFVLAATNLP---WELDAAMLRRLEKRILVPL-PDTEARRAMFESLLPSQTGEESLPY------DLLVERTEGYS 419 (496)
Q Consensus 350 ~~~~~viVIatTn~p---~~Ld~aL~rRf~~~I~~~~-P~~eeR~~Il~~~l~~~~~~~~~~l------~~la~~t~g~s 419 (496)
+....-+|.+.|... -.-|+.+.+||+. +.+|. -..++...++..+-...+.....++ ..+-..++|.+
T Consensus 177 NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 177 NELQIPIVGVGTREAYRALRTDPQLASRFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred hccCCCeEEeccHHHHHHhccCHHHHhccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 222222233333222 2367889999976 55544 2445556666666554444432222 23456688877
Q ss_pred CCchhhcchhhhccHHH
Q 010975 420 GSDIRLVSKEAAMQPLR 436 (496)
Q Consensus 420 ~~dI~~l~~~A~~~a~r 436 (496)
| ++..+++.|+..|++
T Consensus 256 G-~l~~ll~~aA~~AI~ 271 (302)
T PF05621_consen 256 G-ELSRLLNAAAIAAIR 271 (302)
T ss_pred H-HHHHHHHHHHHHHHh
Confidence 5 788999999988876
No 196
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.93 E-value=2.6e-09 Score=110.64 Aligned_cols=161 Identities=25% Similarity=0.320 Sum_probs=103.5
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec----------
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA---------- 282 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~---------- 282 (496)
..|..++|++..|..|.-....|. -.++||.|+.||||||++|+||.-+.---+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~------------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQ------------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccc------------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 347889999999998776544432 2689999999999999999999987211110011
Q ss_pred ---c-------------------cccccccCChHHHH------HHHHH----------HhhhcCCcceehhhHHHHHhhh
Q 010975 283 ---S-------------------SVVSKWRGDSEKLI------KVLFE----------LARHHAPSTIFLDEIDAIISQR 324 (496)
Q Consensus 283 ---s-------------------~l~~~~~G~~e~~l------~~lf~----------~a~~~~p~ILfIDEID~L~~~r 324 (496)
. .+.+.-.|.++.++ .+..+ .++.+ .+||++||+..|..
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~d-- 158 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLDD-- 158 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccccH--
Confidence 0 01111112333311 11111 01122 26999999987742
Q ss_pred cCCcchhHHhhhhhhhhhhhcc---------Ccc-ccCcEEEEEeccCCcc-cccHHHHHHhhhhhcccCC-CHHHHHHH
Q 010975 325 GEARSEHEASRRLKTELLIQMD---------GLT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRAM 392 (496)
Q Consensus 325 ~~~~~~~~~~~~i~~~Ll~~ld---------~~~-~~~~~viVIatTn~p~-~Ld~aL~rRf~~~I~~~~P-~~eeR~~I 392 (496)
.+++.||+.+. |+. ..+.++++|+|+|..+ .|-+.|++||...+.+..| +.++|.+|
T Consensus 159 -----------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 159 -----------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred -----------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHH
Confidence 34455555443 332 2344688899988874 6999999999999988776 78899999
Q ss_pred HHhhCCC
Q 010975 393 FESLLPS 399 (496)
Q Consensus 393 l~~~l~~ 399 (496)
.++-+..
T Consensus 228 i~r~~~f 234 (423)
T COG1239 228 IRRRLAF 234 (423)
T ss_pred HHHHHHh
Confidence 8877654
No 197
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=3.1e-09 Score=117.34 Aligned_cols=176 Identities=11% Similarity=0.107 Sum_probs=106.8
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeee-eec
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISA 282 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~-v~~ 282 (496)
..|.+++.+.+++|++|+++.++.|..++...... ..+.+.++|+||||+|||++++.+|++++..+++ .+.
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 45788889999999999999999999887542211 1223459999999999999999999999876544 221
Q ss_pred c---cccccc------------cCChHHHHHHHHHHhhh----------cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 283 S---SVVSKW------------RGDSEKLIKVLFELARH----------HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 283 s---~l~~~~------------~G~~e~~l~~lf~~a~~----------~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
. .....| .......++.++..+.. ....||+|||++.+... . . . .
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-----~---~-~ 214 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-----T---R-A 214 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-----H---H-H
Confidence 1 000000 01122334444444431 23469999999987532 1 1 1 1
Q ss_pred hhhhhh-hccCccccCcEEEEEeccCCcc--------------cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975 338 KTELLI-QMDGLTQSDELVFVLAATNLPW--------------ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 338 ~~~Ll~-~ld~~~~~~~~viVIatTn~p~--------------~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
+..++. ... ..+...+|+++|..+. .+.+++++ |.. +|.|.+.+..+....|+.++...
T Consensus 215 lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 215 LHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhh
Confidence 222332 111 1222233444442221 14477876 554 48999999999888888877654
No 198
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.92 E-value=8.4e-09 Score=101.21 Aligned_cols=169 Identities=17% Similarity=0.221 Sum_probs=114.5
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-c--ceeeeeec
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K--TTFFNISA 282 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~--~~~i~v~~ 282 (496)
|..++.+.+++.+.+.++....+..... .-. -.|+++|||+|+||-|.+.++.+++ | .+=..+..
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~-~~d-----------~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~ 70 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSS-TGD-----------FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET 70 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcc-cCC-----------CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence 4566777888999999999998887664 111 1589999999999999999999988 2 11011100
Q ss_pred -------------cc--------ccccccCChHH-HHHHHHHHhhhcC---------CcceehhhHHHHHhhhcCCcchh
Q 010975 283 -------------SS--------VVSKWRGDSEK-LIKVLFELARHHA---------PSTIFLDEIDAIISQRGEARSEH 331 (496)
Q Consensus 283 -------------s~--------l~~~~~G~~e~-~l~~lf~~a~~~~---------p~ILfIDEID~L~~~r~~~~~~~ 331 (496)
+. +.....|...+ .+..++++..+.+ ..|++|.|+|.|..+
T Consensus 71 ~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d-------- 142 (351)
T KOG2035|consen 71 RTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD-------- 142 (351)
T ss_pred EEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH--------
Confidence 00 11111232222 3444555544332 349999999999654
Q ss_pred HHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC
Q 010975 332 EASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 403 (496)
Q Consensus 332 ~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~ 403 (496)
.+.+|-..|+- ..+.+.+|..+|....+-+++++|+- .+.+|.|+.++...++...+.+....
T Consensus 143 -----AQ~aLRRTMEk---Ys~~~RlIl~cns~SriIepIrSRCl-~iRvpaps~eeI~~vl~~v~~kE~l~ 205 (351)
T KOG2035|consen 143 -----AQHALRRTMEK---YSSNCRLILVCNSTSRIIEPIRSRCL-FIRVPAPSDEEITSVLSKVLKKEGLQ 205 (351)
T ss_pred -----HHHHHHHHHHH---HhcCceEEEEecCcccchhHHhhhee-EEeCCCCCHHHHHHHHHHHHHHhccc
Confidence 22334444542 23345677788999899999999994 49999999999999999998877665
No 199
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.91 E-value=1.7e-09 Score=115.74 Aligned_cols=199 Identities=22% Similarity=0.257 Sum_probs=124.3
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc--
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW-- 289 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~-- 289 (496)
+.+++|.......+.+.+.... .....++++|++||||+++|++++... +.+|+.++|..+....
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~ 211 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLE 211 (457)
T ss_pred ccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHH
Confidence 4567777666666555443322 123579999999999999999998865 5789999998764221
Q ss_pred ---cCChHH-------HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------ccc
Q 010975 290 ---RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQS 351 (496)
Q Consensus 290 ---~G~~e~-------~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~ 351 (496)
.|.... .....+..+ ..++|||||||.+.... +..|+..++.. ...
T Consensus 212 ~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~~~-------------q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 212 SELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPLVL-------------QAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCHHH-------------HHHHHHHHhcCcEEeCCCCcee
Confidence 111000 000122222 23799999999985442 23344444321 112
Q ss_pred CcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcC
Q 010975 352 DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSG 420 (496)
Q Consensus 352 ~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~ 420 (496)
...+.||+||+..- .+.+.+..|+.. +.+..|...+|.+ ++..++.+.... ......++++
T Consensus 276 ~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~-~~i~~ppLreR~~di~~l~~~~l~~~~~~-------~~~~~~~~~~ 347 (457)
T PRK11361 276 KVDIRIIAATNRDLQAMVKEGTFREDLFYRLNV-IHLILPPLRDRREDISLLANHFLQKFSSE-------NQRDIIDIDP 347 (457)
T ss_pred eeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhchhhHHHHHHHHHHHHHHH-------cCCCCCCcCH
Confidence 23467888887652 355667778755 7888888888875 444444332111 1122346788
Q ss_pred CchhhcchhhhccHHHHHHHHhhcccc
Q 010975 421 SDIRLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 421 ~dI~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
..+..+.+..|.++++++.+.++....
T Consensus 348 ~a~~~L~~~~wpgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 348 MAMSLLTAWSWPGNIRELSNVIERAVV 374 (457)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 888999999999999998887776543
No 200
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.91 E-value=1.6e-10 Score=101.94 Aligned_cols=109 Identities=31% Similarity=0.335 Sum_probs=57.2
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeecc-cc-----cccccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SV-----VSKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s-~l-----~~~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~ 323 (496)
|+||+|+||+|||++|+++|+.++..|.+|.+. ++ .+..+-.... ..|+-.+. --..|+++|||++..++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccCCHH
Confidence 689999999999999999999999999888663 22 2211100000 00000000 00149999999876544
Q ss_pred hcCCcchhHHhhhhhhhhhhhccCc-------c-ccCcEEEEEeccCCcc-----cccHHHHHHh
Q 010975 324 RGEARSEHEASRRLKTELLIQMDGL-------T-QSDELVFVLAATNLPW-----ELDAAMLRRL 375 (496)
Q Consensus 324 r~~~~~~~~~~~~i~~~Ll~~ld~~-------~-~~~~~viVIatTn~p~-----~Ld~aL~rRf 375 (496)
++++|++.|.+. . .-+...+||||-|..+ .+++++++||
T Consensus 78 -------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 78 -------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp -------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred -------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 445566665422 1 1234578899989774 5999999998
No 201
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.90 E-value=8.3e-10 Score=120.09 Aligned_cols=166 Identities=24% Similarity=0.239 Sum_probs=99.0
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee----ecccccccccCC
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWRGD 292 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v----~~s~l~~~~~G~ 292 (496)
++.|++.+|..+.-.+.........-........+|||+|+||||||++|+++++.+....+.. ++..+.......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 6899999988877665432111000001123335899999999999999999999875433221 222222111000
Q ss_pred ---hHHHHH-HHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC---------cc-ccCcEEEEE
Q 010975 293 ---SEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVL 358 (496)
Q Consensus 293 ---~e~~l~-~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~viVI 358 (496)
.+..++ ..+..| ..++++|||+|.+... .+..|+..|+. .. .-+.+..||
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 000000 011112 2379999999998533 22334444432 11 112457789
Q ss_pred eccCCcc-------------cccHHHHHHhhhhh-cccCCCHHHHHHHHHhhCC
Q 010975 359 AATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 359 atTn~p~-------------~Ld~aL~rRf~~~I-~~~~P~~eeR~~Il~~~l~ 398 (496)
||+|..+ .+++++++||+.++ ..+.|+.+...+|+++.+.
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9998652 59999999998654 4478999999999998764
No 202
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.2e-09 Score=109.55 Aligned_cols=134 Identities=26% Similarity=0.461 Sum_probs=91.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccCC-hHHHHHHHHHHhhh----cCCcceehhhHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD-SEKLIKVLFELARH----HAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G~-~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~ 323 (496)
.+|||.||+|+|||.||+.+|+-++.||...+|..+.. .|+|+ .+..+..++..|.. .+.+|+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 57999999999999999999999999999999999875 68886 45566666665542 34589999999999844
Q ss_pred hcCCcchhHH-hhhhhhhhhhhccCcc-----------ccCcEEEEEeccCCc-------ccccHHHHHHhh-hhhcccC
Q 010975 324 RGEARSEHEA-SRRLKTELLIQMDGLT-----------QSDELVFVLAATNLP-------WELDAAMLRRLE-KRILVPL 383 (496)
Q Consensus 324 r~~~~~~~~~-~~~i~~~Ll~~ld~~~-----------~~~~~viVIatTn~p-------~~Ld~aL~rRf~-~~I~~~~ 383 (496)
..+-....++ ..-++..||..++|.. .+++ .+.|-|+|-. ..||.-+.+|.+ .-+-|..
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd-~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~ 385 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGD-TVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGA 385 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCC-eEEEeccceEEEecccccchHHHHHHhhcchhcccCC
Confidence 2221111122 2346677888887531 1111 3334444433 358888888774 4455666
Q ss_pred C
Q 010975 384 P 384 (496)
Q Consensus 384 P 384 (496)
|
T Consensus 386 ~ 386 (564)
T KOG0745|consen 386 P 386 (564)
T ss_pred C
Confidence 6
No 203
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.89 E-value=1.4e-09 Score=120.41 Aligned_cols=53 Identities=36% Similarity=0.543 Sum_probs=44.4
Q ss_pred CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 276 (496)
Q Consensus 210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~ 276 (496)
.|..-+++++|++++++.+...+.. .++++|+||||||||++++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3445588999999999999887753 2489999999999999999999988543
No 204
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.89 E-value=9.3e-10 Score=118.02 Aligned_cols=215 Identities=21% Similarity=0.214 Sum_probs=132.2
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc--
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW-- 289 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~-- 289 (496)
...++|.......+.+.+.... .....+++.|++||||+++|++++... +.+|+.++|..+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 3458888777777766553321 123579999999999999999999875 5789999998763321
Q ss_pred ---cCC----hHHHHH---HHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------ccc
Q 010975 290 ---RGD----SEKLIK---VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQS 351 (496)
Q Consensus 290 ---~G~----~e~~l~---~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~ 351 (496)
.|. ...... ..+.. ...++||||||+.|.... +..|+..++.- ...
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l~~~~-------------q~~ll~~l~~~~~~~~~~~~~~ 266 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDMPLDA-------------QTRLLRVLADGEFYRVGGRTPI 266 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhCCHHH-------------HHHHHHHHhcCcEEECCCCcee
Confidence 111 000000 11222 234799999999985442 23344444321 112
Q ss_pred CcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHH----HHHHhhCCCCCCCCCCCcceeeecccCCcC
Q 010975 352 DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARR----AMFESLLPSQTGEESLPYDLLVERTEGYSG 420 (496)
Q Consensus 352 ~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~----~Il~~~l~~~~~~~~~~l~~la~~t~g~s~ 420 (496)
...+.||++|+..- .+.+.|..|+.. +.+..|...+|. .++++++...... ......++++
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLr~R~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~ 338 (463)
T TIGR01818 267 KVDVRIVAATHQNLEALVRQGKFREDLFHRLNV-IRIHLPPLRERREDIPRLARHFLALAARE-------LDVEPKLLDP 338 (463)
T ss_pred eeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCc-ceecCCCcccchhhHHHHHHHHHHHHHHH-------hCCCCCCcCH
Confidence 23466777776552 355677778754 566666655554 4555555433211 1112346888
Q ss_pred CchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975 421 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 469 (496)
Q Consensus 421 ~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al 469 (496)
..+..+.+.-|.+++|++.+.++.....+... .|+.+|+...+
T Consensus 339 ~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~~------~i~~~~l~~~~ 381 (463)
T TIGR01818 339 EALERLKQLRWPGNVRQLENLCRWLTVMASGD------EVLVSDLPAEL 381 (463)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC------cccHHhchHHH
Confidence 99999999999999999998887665443332 26777765444
No 205
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.86 E-value=3.2e-09 Score=98.35 Aligned_cols=133 Identities=23% Similarity=0.292 Sum_probs=86.7
Q ss_pred cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce-----------------------
Q 010975 220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------------- 276 (496)
Q Consensus 220 G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~----------------------- 276 (496)
|++.+++.|.+.+... ..+..+||+||+|+||+++|+++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 7888889888877543 234569999999999999999999988221
Q ss_pred eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccC
Q 010975 277 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 352 (496)
Q Consensus 277 ~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 352 (496)
++.++...... .-....++.+.+.+.. ....|++|||+|.|.. ...++|++.|+ ..+
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE---epp 130 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE---EPP 130 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH---STT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc---CCC
Confidence 12221111000 1123556666665543 2345999999998853 34578999987 344
Q ss_pred cEEEEEeccCCcccccHHHHHHhhhhhcccC
Q 010975 353 ELVFVLAATNLPWELDAAMLRRLEKRILVPL 383 (496)
Q Consensus 353 ~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~ 383 (496)
..+.+|.+|+.++.+-+.+++|+.. +.++.
T Consensus 131 ~~~~fiL~t~~~~~il~TI~SRc~~-i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRSRCQV-IRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHTTSEE-EEE--
T ss_pred CCEEEEEEECChHHChHHHHhhceE-EecCC
Confidence 5577888899999999999999955 66654
No 206
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1e-09 Score=115.04 Aligned_cols=47 Identities=45% Similarity=0.627 Sum_probs=41.0
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..|.||+|++.+|+.+.....- .+|+|++||||||||++|+.+...+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 3588999999999999887643 3689999999999999999998866
No 207
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.86 E-value=9.1e-09 Score=102.19 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=108.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcc-eee--ee-ec----cc----cccc----ccCCh-HH---HHHHHH-HHhhhcC
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKT-TFF--NI-SA----SS----VVSK----WRGDS-EK---LIKVLF-ELARHHA 308 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~-~~i--~v-~~----s~----l~~~----~~G~~-e~---~l~~lf-~~a~~~~ 308 (496)
..++|+||+|+|||++++.+++.+.. .+. .+ +. .+ +... ..+.. .. .+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 221 11 11 11 1000 11111 11 122212 2233445
Q ss_pred CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc---cc----cHHHHHHhhhhhcc
Q 010975 309 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---EL----DAAMLRRLEKRILV 381 (496)
Q Consensus 309 p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~---~L----d~aL~rRf~~~I~~ 381 (496)
+.+|+|||++.+.... ...+..+.... ......+.|+.+. .++ .+ ...+.+|+...+.+
T Consensus 124 ~~vliiDe~~~l~~~~----------~~~l~~l~~~~---~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLTPEL----------LEELRMLSNFQ---TDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQRIIASCHL 189 (269)
T ss_pred CeEEEEECcccCCHHH----------HHHHHHHhCcc---cCCCCeEEEEEcC-CHHHHHHHcCchhHHHHhheeeeeeC
Confidence 6799999998873220 11111121111 1112223333333 221 12 13466788778899
Q ss_pred cCCCHHHHHHHHHhhCCCCCCCC-----CCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCC
Q 010975 382 PLPDTEARRAMFESLLPSQTGEE-----SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQ 456 (496)
Q Consensus 382 ~~P~~eeR~~Il~~~l~~~~~~~-----~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~ 456 (496)
+..+.++..+++...+....... ...++.+.+.+.|.. ..|..++..+...+..+ .
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~------------------~ 250 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLE------------------E 250 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHc------------------C
Confidence 99999999999988875443221 223455677788875 45888888777766553 0
Q ss_pred CCCCCchhHHHHhhcCC
Q 010975 457 IGPIRPEDVEIALKNTR 473 (496)
Q Consensus 457 ~~~It~eDf~~Al~~~~ 473 (496)
...|+.++++.++..++
T Consensus 251 ~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 KREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 12489999999998765
No 208
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=9.8e-09 Score=105.20 Aligned_cols=127 Identities=13% Similarity=0.203 Sum_probs=90.2
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcce------------------------eeeeecccccccccCChHHHHHHHHHHh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFELA 304 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a 304 (496)
++.+||+||+|+||+++|+++|+.+.+. ++.+... .++. -.-..++.+.+.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~--I~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKD--IGVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCC--CCHHHHHHHHHHH
Confidence 4679999999999999999999988331 1111110 0011 1234555555444
Q ss_pred hh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhc
Q 010975 305 RH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRIL 380 (496)
Q Consensus 305 ~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~ 380 (496)
.. ....|++||++|.|.. ...+.||+.++ .++..+++|.+|+.++.+.+.++||+.. +.
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~-------------~AaNaLLKtLE---EPp~~~~fiL~t~~~~~llpTI~SRC~~-~~ 162 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTE-------------AAANALLKTLE---EPRPNTYFLLQADLSAALLPTIYSRCQT-WL 162 (325)
T ss_pred hhccccCCceEEEEechhhhCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChHhCchHHHhhceE-Ee
Confidence 32 3345999999999842 23477888887 3555677888899999999999999966 89
Q ss_pred ccCCCHHHHHHHHHhh
Q 010975 381 VPLPDTEARRAMFESL 396 (496)
Q Consensus 381 ~~~P~~eeR~~Il~~~ 396 (496)
+++|+.++..+.+...
T Consensus 163 ~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 163 IHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999888877764
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.83 E-value=1.4e-08 Score=104.66 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=48.9
Q ss_pred cc-hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc-------eeeeeec
Q 010975 215 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISA 282 (496)
Q Consensus 215 l~-dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~-------~~i~v~~ 282 (496)
|+ +++|++++++++.+++...... .....+.++|+||||+|||++|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g------~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQG------LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhc------CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 45 8999999999999988654321 1123356899999999999999999999966 7777765
No 210
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.81 E-value=2.4e-09 Score=108.20 Aligned_cols=207 Identities=21% Similarity=0.234 Sum_probs=133.3
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 285 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l 285 (496)
......|+.+++.....+.+.+..... ......+||.|.+||||-.+|++-...+ ..+|+.+||..+
T Consensus 197 ~~~~~~F~~~v~~S~~mk~~v~qA~k~----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 197 AQDVSGFEQIVAVSPKMKHVVEQAQKL----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred cccccchHHHhhccHHHHHHHHHHHHh----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 345667889999887776665533211 1122469999999999999999998877 789999999776
Q ss_pred ccc-----ccCChH--HHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------c
Q 010975 286 VSK-----WRGDSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 350 (496)
Q Consensus 286 ~~~-----~~G~~e--~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 350 (496)
-.. ..|..+ +--..+|+.|.+ +.+|+|||..+.+. ++..|+..+.+-. .
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp~-------------lQaKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSPR-------------LQAKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcCHH-------------HHHHHHHHhcCCceeecCCcce
Confidence 543 122221 223457777766 79999999877543 4445555554322 1
Q ss_pred cCcEEEEEeccCCc--cc-----ccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975 351 SDELVFVLAATNLP--WE-----LDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS 419 (496)
Q Consensus 351 ~~~~viVIatTn~p--~~-----Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s 419 (496)
-.-.|.||+||..+ +. .-+.|.-|... +.+..|...||.. +.+.++.+.... +.-....++
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNV-Ltl~~PpLRer~~di~pL~e~Fv~q~s~e-------lg~p~pkl~ 402 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLNV-LTLNLPPLRERPQDIMPLAELFVQQFSDE-------LGVPRPKLA 402 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHHHhhe-eeecCCccccCcccchHHHHHHHHHHHHH-------hCCCCCccC
Confidence 22358899999776 22 33445558865 7888888777764 333333222111 222233455
Q ss_pred CCchhhcchhhhccHHHHHHHHhhccccCC
Q 010975 420 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 449 (496)
Q Consensus 420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~i~ 449 (496)
+.-+..+.++.|.+++|++.+.+.+.-...
T Consensus 403 ~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 403 ADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 666778899999999999888776654433
No 211
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=1.3e-08 Score=104.91 Aligned_cols=128 Identities=13% Similarity=0.183 Sum_probs=89.7
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhcce------------------------eeeeecccccccccCChHHHHHHHHHH
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 303 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------~i~v~~s~l~~~~~G~~e~~l~~lf~~ 303 (496)
.+..+||+||+|+||+++|.++|+.+-+. ++.+....- .. .-.-..++.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHHHH
Confidence 34679999999999999999999988321 111111000 00 0123345555544
Q ss_pred hh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhh
Q 010975 304 AR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 379 (496)
Q Consensus 304 a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I 379 (496)
+. .....|++||++|.|.. ...+.||+.++ .++..+++|.+|+.++.+.+.++||+.. +
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTIrSRCq~-~ 162 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTD-------------AAANALLKTLE---EPPENTWFFLACREPARLLATLRSRCRL-H 162 (334)
T ss_pred HhhccccCCceEEEEcchHhhCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChhhChHHHHhcccc-c
Confidence 43 23446999999999843 24477889887 3455677888899999999999999976 8
Q ss_pred cccCCCHHHHHHHHHh
Q 010975 380 LVPLPDTEARRAMFES 395 (496)
Q Consensus 380 ~~~~P~~eeR~~Il~~ 395 (496)
.++.|+.++....+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 163 YLAPPPEQYALTWLSR 178 (334)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 9999998888877754
No 212
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=7.7e-09 Score=106.68 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=89.5
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhccee-------------------------eeeeccccc----------------
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKTTF-------------------------FNISASSVV---------------- 286 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~-------------------------i~v~~s~l~---------------- 286 (496)
.++++||+||+|+||+++|+++|+.+.+.- +.+......
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 346899999999999999999999884421 111110000
Q ss_pred --cc----c-cCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEE
Q 010975 287 --SK----W-RGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 355 (496)
Q Consensus 287 --~~----~-~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~v 355 (496)
++ . ..-.-..++.+.+.+.. ....|++||++|.|.. ...+.||+.++ ..+..+
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~t 163 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-------------AAANALLKTLE---EPPPGT 163 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-------------HHHHHHHHHhc---CCCcCc
Confidence 00 0 00112344555444332 2234888999988842 23477888887 455567
Q ss_pred EEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhh
Q 010975 356 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 396 (496)
Q Consensus 356 iVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~ 396 (496)
++|.+|++++.+.+.++||+.. +.|++|+.++..+.+...
T Consensus 164 ~fiL~t~~~~~LLpTI~SRcq~-i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 164 VFLLVSARIDRLLPTILSRCRQ-FPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEEECChhhCcHHHHhcCEE-EEecCCCHHHHHHHHHHc
Confidence 7888999999999999999955 999999999999888763
No 213
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.81 E-value=2.2e-09 Score=114.34 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=126.6
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccccc---
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR--- 290 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~--- 290 (496)
.++|.......+.+.+.... .....++++|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 46676666665554442221 223579999999999999999998765 57899999987632211
Q ss_pred --CC----hHHHH---HHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccCc
Q 010975 291 --GD----SEKLI---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDE 353 (496)
Q Consensus 291 --G~----~e~~l---~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~ 353 (496)
|. ..+.. ...+.. ...++|||||||.|....+ ..|+..++.- .....
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l~~~~q-------------~~l~~~l~~~~~~~~~~~~~~~~ 273 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPMMQ-------------VRLLRAIQEREVQRVGSNQTISV 273 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccCCHHHH-------------HHHHHHHccCcEEeCCCCceeee
Confidence 10 00000 001122 2357999999999865422 2333333321 11122
Q ss_pred EEEEEeccCCc-c------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcCCc
Q 010975 354 LVFVLAATNLP-W------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSD 422 (496)
Q Consensus 354 ~viVIatTn~p-~------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~~d 422 (496)
.+.+|++|+.+ . .+.+.|..|+.. +.+..|...+|.+ ++++++...... ..+...++++..
T Consensus 274 ~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~-~~i~~ppLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~~a 345 (441)
T PRK10365 274 DVRLIAATHRDLAAEVNAGRFRQDLYYRLNV-VAIEVPSLRQRREDIPLLAGHFLQRFAER-------NRKAVKGFTPQA 345 (441)
T ss_pred ceEEEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhcchhHHHHHHHHHHHHHHH-------hCCCCCCcCHHH
Confidence 35567666554 2 244555556754 7778888887765 455554432111 112234578889
Q ss_pred hhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975 423 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 469 (496)
Q Consensus 423 I~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al 469 (496)
+..+.+..|.++++++.+.++......+. ..|+.+|+...+
T Consensus 346 ~~~L~~~~wpgN~reL~~~~~~~~~~~~~------~~i~~~~l~~~~ 386 (441)
T PRK10365 346 MDLLIHYDWPGNIRELENAVERAVVLLTG------EYISERELPLAI 386 (441)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhCCC------CccchHhCchhh
Confidence 99999999999999999888765443222 225666664433
No 214
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=2e-08 Score=102.81 Aligned_cols=144 Identities=19% Similarity=0.211 Sum_probs=95.4
Q ss_pred chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------------------eee
Q 010975 221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------------FFN 279 (496)
Q Consensus 221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---------------------~i~ 279 (496)
++.+.+.+...+... ..+..+||+||+|+||+++|.++|+.+.+. ++.
T Consensus 9 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDAG-----------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 344566666655322 234579999999999999999999977321 111
Q ss_pred eecccccccccC------ChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc
Q 010975 280 ISASSVVSKWRG------DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 349 (496)
Q Consensus 280 v~~s~l~~~~~G------~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 349 (496)
+.. .....| -.-..++.+.+.+.. ....|++||++|.|.. ...+.||+.++.
T Consensus 78 i~~---~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLEE-- 139 (319)
T PRK08769 78 VSF---IPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR-------------AACNALLKTLEE-- 139 (319)
T ss_pred Eec---CCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH-------------HHHHHHHHHhhC--
Confidence 100 000001 123345555554433 2235999999999842 234778888873
Q ss_pred ccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHh
Q 010975 350 QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 395 (496)
Q Consensus 350 ~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~ 395 (496)
.+..+++|.+|+.++.+.+.++||+.. +.|+.|+.++....+..
T Consensus 140 -Pp~~~~fiL~~~~~~~lLpTIrSRCq~-i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 140 -PSPGRYLWLISAQPARLPATIRSRCQR-LEFKLPPAHEALAWLLA 183 (319)
T ss_pred -CCCCCeEEEEECChhhCchHHHhhheE-eeCCCcCHHHHHHHHHH
Confidence 444566777889999999999999966 89999999888877764
No 215
>PRK08181 transposase; Validated
Probab=98.78 E-value=5e-09 Score=104.78 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=74.6
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC-hHHHHHHHHHHhhhcCCcceehhhHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQR 324 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~-~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r 324 (496)
..+++|+||||||||+|+.++++++ |..++.++..++....... ........+.... ++.+|+|||++.+...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC-
Confidence 3689999999999999999999866 6778888887776643211 1112223333332 3579999999775322
Q ss_pred cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc-c---------ccHHHHHHhh---hhhcccCCCHHHHH
Q 010975 325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-E---------LDAAMLRRLE---KRILVPLPDTEARR 390 (496)
Q Consensus 325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~-~---------Ld~aL~rRf~---~~I~~~~P~~eeR~ 390 (496)
......|+..++...... -+|.|||.+. . +..++.+|+- ..+.+...+...+.
T Consensus 183 ----------~~~~~~Lf~lin~R~~~~---s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R~~~ 248 (269)
T PRK08181 183 ----------QAETSVLFELISARYERR---SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRT 248 (269)
T ss_pred ----------HHHHHHHHHHHHHHHhCC---CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccchhHH
Confidence 111233455554322222 2556788762 1 3356677762 33555555544433
No 216
>PRK12377 putative replication protein; Provisional
Probab=98.77 E-value=4.7e-09 Score=103.76 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=65.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChH--HHHHHHHHHhhhcCCcceehhhHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSE--KLIKVLFELARHHAPSTIFLDEIDAIISQR 324 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e--~~l~~lf~~a~~~~p~ILfIDEID~L~~~r 324 (496)
.+++|+||||||||+||.++++++ +..++.++..++......... .....+++.. ....+|+|||++.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s- 178 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET- 178 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC-
Confidence 589999999999999999999988 566777777776653321100 0111233333 23479999999553211
Q ss_pred cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc-----cccHHHHHHh
Q 010975 325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-----ELDAAMLRRL 375 (496)
Q Consensus 325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf 375 (496)
......|...++....... -+|.|||... .+..++.+|+
T Consensus 179 ----------~~~~~~l~~ii~~R~~~~~--ptiitSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 179 ----------KNEQVVLNQIIDRRTASMR--SVGMLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred ----------HHHHHHHHHHHHHHHhcCC--CEEEEcCCCHHHHHHHhhHHHHHHH
Confidence 1112345555553322222 2455788762 2455566665
No 217
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=3.1e-08 Score=101.32 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=96.6
Q ss_pred chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce-----------------------e
Q 010975 221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----------------------F 277 (496)
Q Consensus 221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~-----------------------~ 277 (496)
+....+++...+... ..+..+||+||.|+||+++|+++|+.+... +
T Consensus 8 l~~~~~~l~~~~~~~-----------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 8 LVPVWQNWKAGLDAG-----------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 344556666554322 234679999999999999999999987321 1
Q ss_pred eeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975 278 FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 353 (496)
Q Consensus 278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 353 (496)
+.+.... .++. -.-..++.+.+.+.. ....|++||++|.|.. ...+.||+.++ ..+.
T Consensus 77 ~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~ 137 (319)
T PRK06090 77 HVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE-------------SASNALLKTLE---EPAP 137 (319)
T ss_pred EEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCH-------------HHHHHHHHHhc---CCCC
Confidence 1221110 0000 122344554444332 2346999999999842 23477888887 3455
Q ss_pred EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHh
Q 010975 354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 395 (496)
Q Consensus 354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~ 395 (496)
++++|..|+.++.+-+.++||+.. +.++.|+.++..+.+..
T Consensus 138 ~t~fiL~t~~~~~lLpTI~SRCq~-~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVSRCQQ-WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CeEEEEEECChhhChHHHHhccee-EeCCCCCHHHHHHHHHH
Confidence 577888889999999999999965 99999999988887765
No 218
>PRK08116 hypothetical protein; Validated
Probab=98.75 E-value=5.9e-09 Score=104.35 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=72.9
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccC----ChHHHHHHHHHHhhhcCCcceehhhHHHHH
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRG----DSEKLIKVLFELARHHAPSTIFLDEIDAII 321 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G----~~e~~l~~lf~~a~~~~p~ILfIDEID~L~ 321 (496)
..+++|+|+||||||+||.++++++ +.+++.++..++...+.. ........+++... ...+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 3579999999999999999999987 678888888776554321 11111223333333 23699999994310
Q ss_pred hhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-cc----ccHHHHHHhh---hhhcccCCCH
Q 010975 322 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRLE---KRILVPLPDT 386 (496)
Q Consensus 322 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-~~----Ld~aL~rRf~---~~I~~~~P~~ 386 (496)
. +......|+..++....... .+|.|||.+ .. ++.++.+|+- ..+.+..++.
T Consensus 192 ------~-----t~~~~~~l~~iin~r~~~~~--~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ------D-----TEWAREKVYNIIDSRYRKGL--PTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred ------C-----CHHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 0 11223445555654322222 245577765 33 5667888852 2344555553
No 219
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.74 E-value=9.2e-09 Score=110.91 Aligned_cols=144 Identities=26% Similarity=0.315 Sum_probs=88.4
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeec------c
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA------S 283 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~------s 283 (496)
.+.++.|++.+++.+.-.+ ....+++|+||||+|||++++.++..+. ...+++.. .
T Consensus 189 d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~ 254 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA 254 (506)
T ss_pred CeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence 5778999988887754322 2336899999999999999999998662 11222111 0
Q ss_pred -----cc-----cc--------cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975 284 -----SV-----VS--------KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 345 (496)
Q Consensus 284 -----~l-----~~--------~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l 345 (496)
.+ .. ..+|.....-...+..|.. ++|||||++.+.. .++..|++.|
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~~-------------~~~~~L~~~L 318 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFER-------------RTLDALREPI 318 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCCH-------------HHHHHHHHHH
Confidence 00 00 0111111011123444544 7999999987632 3344455544
Q ss_pred cCcc----------ccCcEEEEEeccCCcc---------------------cccHHHHHHhhhhhcccCCCHH
Q 010975 346 DGLT----------QSDELVFVLAATNLPW---------------------ELDAAMLRRLEKRILVPLPDTE 387 (496)
Q Consensus 346 d~~~----------~~~~~viVIatTn~p~---------------------~Ld~aL~rRf~~~I~~~~P~~e 387 (496)
+.-. ..+.++.+|+|+|... .++.++++||+..+.++.|+.+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 3211 1234578899998752 3778999999999999988654
No 220
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.73 E-value=1e-08 Score=115.81 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=95.9
Q ss_pred hhhcchHHHHHHhhhhcccccCccccc---------cccCccceeeeeCCCCChhHHHHHHHHhhhc-------ceeeee
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFT---------GLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNI 280 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~---------~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-------~~~i~v 280 (496)
.|.|.+.+|+.|.-.+........... ...+...+|||+|+||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 589999999987655533221100000 1133445899999999999999999998653 233333
Q ss_pred ecccccccccCChHH--HHH-HHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc---------
Q 010975 281 SASSVVSKWRGDSEK--LIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------- 348 (496)
Q Consensus 281 ~~s~l~~~~~G~~e~--~l~-~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------- 348 (496)
.+..... +.+...+ .++ ..+..| ..++++|||+|.+... .+..|+..|+.-
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCCc
Confidence 3332211 0000000 000 011122 2379999999998533 223344444321
Q ss_pred -cccCcEEEEEeccCCcc-------------cccHHHHHHhhhhh-cccCCCHHHHHHHHHhhCC
Q 010975 349 -TQSDELVFVLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 349 -~~~~~~viVIatTn~p~-------------~Ld~aL~rRf~~~I-~~~~P~~eeR~~Il~~~l~ 398 (496)
..-..++.||||+|..+ .++++|++||+.+. .++.|+.+.=..|.++++.
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 11234578999998752 38899999998654 4466777776677666654
No 221
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=9.2e-08 Score=99.92 Aligned_cols=235 Identities=18% Similarity=0.221 Sum_probs=144.6
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeeccccccc--
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK-- 288 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~-- 288 (496)
..+.|.+..+..+.+++..++... .+.++.+.|-||||||.+..-+...+ +...++++|.++...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~--------t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELN--------TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcc--------cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 459999999999999997766432 34679999999999999988776655 224578888764321
Q ss_pred --------c----c-CChHHHHHHHHH-Hhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975 289 --------W----R-GDSEKLIKVLFE-LARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 353 (496)
Q Consensus 289 --------~----~-G~~e~~l~~lf~-~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 353 (496)
+ . +.........|. ..... .+-|+++||+|.|....+ . .|+...+.-.....
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~----------~---vLy~lFewp~lp~s 288 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ----------T---VLYTLFEWPKLPNS 288 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc----------c---eeeeehhcccCCcc
Confidence 1 1 111222222222 22222 356899999999984422 1 23333333344566
Q ss_pred EEEEEeccCCcccccHHHHH---Hh---hhhhcccCCCHHHHHHHHHhhCCCCCCCCCC--CcceeeecccCCcCCchhh
Q 010975 354 LVFVLAATNLPWELDAAMLR---RL---EKRILVPLPDTEARRAMFESLLPSQTGEESL--PYDLLVERTEGYSGSDIRL 425 (496)
Q Consensus 354 ~viVIatTn~p~~Ld~aL~r---Rf---~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~--~l~~la~~t~g~s~~dI~~ 425 (496)
++++|+.+|..+.-|..|-+ |. ...+.|++|+.++..+|+...+......... .++-+|+...|.|| |++.
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRk 367 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRK 367 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHH
Confidence 78888899988765544443 21 4568899999999999999999877655332 35557777787775 7765
Q ss_pred cchhhhccHHHHHHHHhhcc--c----cCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975 426 VSKEAAMQPLRRLMVLLEGR--Q----EVAPDDELPQIGPIRPEDVEIALKNTRPSAH 477 (496)
Q Consensus 426 l~~~A~~~a~rR~~~~le~~--~----~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~ 477 (496)
+.+- .|+++...|.. . ...+.+...+...|..+++-.++.++--+..
T Consensus 368 aLdv-----~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 368 ALDV-----CRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred HHHH-----HHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 4432 22222222211 1 1112222122245778888888888765443
No 222
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.72 E-value=7.3e-09 Score=93.13 Aligned_cols=126 Identities=26% Similarity=0.387 Sum_probs=73.9
Q ss_pred cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecccccccccCChHHH
Q 010975 220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKWRGDSEKL 296 (496)
Q Consensus 220 G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l~~~~~G~~e~~ 296 (496)
|.....+++.+.+.... .....|+|+|+|||||+++|++++...+ .+++.+++..+.
T Consensus 2 G~S~~~~~l~~~l~~~a----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~---------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLA----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP---------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHH----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------
T ss_pred CCCHHHHHHHHHHHHHh----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------
Confidence 44555555555553322 2235799999999999999999999875 366777766542
Q ss_pred HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-c------cccH
Q 010975 297 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W------ELDA 369 (496)
Q Consensus 297 l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-~------~Ld~ 369 (496)
..+++.+ ..++|+|+|+|.+... .+..|+..++...... +.+|+++..+ . .+++
T Consensus 62 -~~~l~~a---~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~--~RlI~ss~~~l~~l~~~~~~~~ 122 (138)
T PF14532_consen 62 -AELLEQA---KGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQERSN--VRLIASSSQDLEELVEEGRFSP 122 (138)
T ss_dssp -HHHHHHC---TTSEEEEECGCCS-HH-------------HHHHHHHHHHHCTTTT--SEEEEEECC-CCCHHHHSTHHH
T ss_pred -HHHHHHc---CCCEEEECChHHCCHH-------------HHHHHHHHHHhcCCCC--eEEEEEeCCCHHHHhhccchhH
Confidence 3455555 4489999999988543 2334555554322222 3344455433 2 3667
Q ss_pred HHHHHhhhhhcccCCC
Q 010975 370 AMLRRLEKRILVPLPD 385 (496)
Q Consensus 370 aL~rRf~~~I~~~~P~ 385 (496)
.|..|+.. +.+..|+
T Consensus 123 ~L~~~l~~-~~i~lPp 137 (138)
T PF14532_consen 123 DLYYRLSQ-LEIHLPP 137 (138)
T ss_dssp HHHHHCST-CEEEE--
T ss_pred HHHHHhCC-CEEeCCC
Confidence 77778754 4555553
No 223
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.72 E-value=3.2e-08 Score=107.52 Aligned_cols=230 Identities=20% Similarity=0.225 Sum_probs=142.5
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------cceeeeeecccc
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSV 285 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~~~~i~v~~s~l 285 (496)
+.|.+.+.....|..++...+... .....+.+.|-||||||.+++.+-.++ ...++.||+..+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 457888888888888776654321 112469999999999999999999977 356888888766
Q ss_pred ccc----------ccCCh------HHHHHHHHHHh-hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc
Q 010975 286 VSK----------WRGDS------EKLIKVLFELA-RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 348 (496)
Q Consensus 286 ~~~----------~~G~~------e~~l~~lf~~a-~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 348 (496)
.+. +.|+. -..+..-|... ....++||+|||+|.|....+ +-|.+.+|..
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-------------HHHHHHhcCC
Confidence 542 11221 12222233311 224568999999999986532 3366667766
Q ss_pred cccCcEEEEEeccCCccc----ccHHHHHHhh-hhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCch
Q 010975 349 TQSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 423 (496)
Q Consensus 349 ~~~~~~viVIatTn~p~~----Ld~aL~rRf~-~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI 423 (496)
...+..++||+.+|..+. +...+-+|++ ..+.|.+++.++..+|+...+.....-.+..++-+++.....||+
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD-- 613 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD-- 613 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc--
Confidence 677777888888877652 2333344653 448899999999999999998765222222233334444444432
Q ss_pred hhcchhhhccHHHHHHHHhhccccCCCCC----CCCCCCCCCchhHHHHhhcCCCCccc
Q 010975 424 RLVSKEAAMQPLRRLMVLLEGRQEVAPDD----ELPQIGPIRPEDVEIALKNTRPSAHL 478 (496)
Q Consensus 424 ~~l~~~A~~~a~rR~~~~le~~~~i~~~~----~~~~~~~It~eDf~~Al~~~~Ps~~~ 478 (496)
.||++...++..+++... .......|++-|+.+|++.+..+...
T Consensus 614 -----------aRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~ 661 (767)
T KOG1514|consen 614 -----------ARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPYI 661 (767)
T ss_pred -----------HHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhHH
Confidence 233333222222222111 11122458999999999999776543
No 224
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.6e-08 Score=111.20 Aligned_cols=178 Identities=23% Similarity=0.359 Sum_probs=124.9
Q ss_pred hhhCCCCCccchhhcc-hHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------c
Q 010975 206 IIRGSPDVKWESIKGL-ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------K 274 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~-e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~ 274 (496)
........+++.++|. ++-.+++.+++....+ ++.+|.|.||+|||.++.-+|+.. +
T Consensus 176 l~p~a~~gkldPvigr~deeirRvi~iL~Rrtk------------~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~ 243 (898)
T KOG1051|consen 176 LTPRARQGKLDPVIGRHDEEIRRVIEILSRKTK------------NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKD 243 (898)
T ss_pred cChhhhccCCCCccCCchHHHHHHHHHHhccCC------------CCceEEecCCCCchhHHHHHHHHhhcCCCCccccc
Confidence 3333334557889998 8888888888865432 688999999999999999999977 4
Q ss_pred ceeeeeecccccc--cccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc
Q 010975 275 TTFFNISASSVVS--KWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 351 (496)
Q Consensus 275 ~~~i~v~~s~l~~--~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 351 (496)
..++.++...+.. ++.|+.+.+++.+.+++.. ....||||||++-+.+..... +..+..+.+...| .+
T Consensus 244 ~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~-~~~d~~nlLkp~L--------~r 314 (898)
T KOG1051|consen 244 KKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNY-GAIDAANLLKPLL--------AR 314 (898)
T ss_pred cceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcc-hHHHHHHhhHHHH--------hc
Confidence 5567777765543 6789999999999998884 455699999999997764331 1112222222111 23
Q ss_pred CcEEEEEeccC-Ccc----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC
Q 010975 352 DELVFVLAATN-LPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL 406 (496)
Q Consensus 352 ~~~viVIatTn-~p~----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~ 406 (496)
+. +.+|+||. ..+ +-+|++-+||+. +.++.|+.+....|++.....+..+++.
T Consensus 315 g~-l~~IGatT~e~Y~k~iekdPalErrw~l-~~v~~pS~~~~~~iL~~l~~~~e~~hg~ 372 (898)
T KOG1051|consen 315 GG-LWCIGATTLETYRKCIEKDPALERRWQL-VLVPIPSVENLSLILPGLSERYEVHHGV 372 (898)
T ss_pred CC-eEEEecccHHHHHHHHhhCcchhhCcce-eEeccCcccchhhhhhhhhhhhccccCC
Confidence 33 55666554 332 478999999987 8999999888788888777665544433
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.64 E-value=2.6e-08 Score=98.31 Aligned_cols=69 Identities=25% Similarity=0.365 Sum_probs=49.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCCh---HHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS---EKLIKVLFELARHHAPSTIFLDEIDAI 320 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~---e~~l~~lf~~a~~~~p~ILfIDEID~L 320 (496)
.+++|+|+||||||+|+.++|+++ +..++.++..++........ ......+++... ...+|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 589999999999999999999988 77888888877765432211 111223444333 3579999999664
No 226
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=6.4e-08 Score=99.47 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=87.2
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhcc-------------------------eeeeeecccccccccC-----ChHHHH
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKT-------------------------TFFNISASSVVSKWRG-----DSEKLI 297 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~-------------------------~~i~v~~s~l~~~~~G-----~~e~~l 297 (496)
.+..+||+||+|+|||++|+.+|+.+.. .++.++...-. +..| -.-..+
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~i 98 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDAV 98 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHHH
Confidence 3467999999999999999999998732 12333221100 0001 123456
Q ss_pred HHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHH
Q 010975 298 KVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 373 (496)
Q Consensus 298 ~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~r 373 (496)
+.+.+.+.. ....|++||+++.|.. ...+.+++.++... ..+.+|.+|++++.+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-------------~a~naLLk~LEep~---~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL-------------QAANSLLKVLEEPP---PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH-------------HHHHHHHHHHHhCc---CCCEEEEEeCChHhChHHHHH
Confidence 666665543 2345999999988732 23356777776542 224466688888899999999
Q ss_pred HhhhhhcccCCCHHHHHHHHHh
Q 010975 374 RLEKRILVPLPDTEARRAMFES 395 (496)
Q Consensus 374 Rf~~~I~~~~P~~eeR~~Il~~ 395 (496)
|+.. +.|+.|+.++....++.
T Consensus 163 Rc~~-~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RCRK-MVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hhhh-hcCCCCCHHHHHHHHHh
Confidence 9965 99999999988877754
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.61 E-value=2.6e-08 Score=102.36 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=67.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC---hHHHHHHHHHHhhhcCCcceehhhHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD---SEKLIKVLFELARHHAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~---~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~ 323 (496)
.+++|+||||||||+|+.++|+++ |..++.++..++....... ........++... ...+|+|||+......
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCCC
Confidence 689999999999999999999988 7788888888776543210 0011111122222 3469999999654211
Q ss_pred hcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-cc----ccHHHHHHhh
Q 010975 324 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRLE 376 (496)
Q Consensus 324 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-~~----Ld~aL~rRf~ 376 (496)
......|+..++........ +|.|||.+ .. +++++.+|+.
T Consensus 262 -----------~~~~~~Lf~iin~R~~~~k~--tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 262 -----------EFSKSELFNLINKRLLRQKK--MIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred -----------HHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHHHHHHH
Confidence 12224455555533222222 44567754 33 4567777763
No 228
>PRK06526 transposase; Provisional
Probab=98.59 E-value=2.6e-08 Score=98.91 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=47.0
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC-hHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAI 320 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~-~e~~l~~lf~~a~~~~p~ILfIDEID~L 320 (496)
...+++|+||||||||+||.+++.++ |..+..++..++....... ..+.+...+... ..+.+|+|||++.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 34689999999999999999999876 6666666666655432110 011122222222 33579999999865
No 229
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.56 E-value=5.1e-08 Score=108.03 Aligned_cols=52 Identities=35% Similarity=0.551 Sum_probs=44.1
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
..|+..|++++|++++++.|...+.. .++++|+||||||||++++++++.+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 34667799999999999999886643 14799999999999999999999773
No 230
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.54 E-value=2.2e-08 Score=94.23 Aligned_cols=69 Identities=29% Similarity=0.507 Sum_probs=45.8
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCCh-HHHHHHHHHHhhhcCCcceehhhHH
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEID 318 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~-e~~l~~lf~~a~~~~p~ILfIDEID 318 (496)
...+++|+||||||||+||.++++++ |.++..++..++........ .......+.... ...+|+|||+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG 118 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLG 118 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCT
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccc
Confidence 34789999999999999999999977 78888888887766432211 111223333333 24699999994
No 231
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.9e-07 Score=105.53 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=91.2
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc-------
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV------- 286 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~------- 286 (496)
.|+|++++...|.+.+.....-. .. . .+...++|.||.|+|||-||+++|..+ .-.++.++++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl--~~-~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGL--KD-P-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhccc--CC-C-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 59999999999999886543211 01 0 355679999999999999999999988 4568999998522
Q ss_pred --ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------cccCcEEE
Q 010975 287 --SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDELVF 356 (496)
Q Consensus 287 --~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~vi 356 (496)
..|+|..+. ..+.+..+....+||+|||||+-.+ .+++.|++.+|.- .-.-.+++
T Consensus 639 sp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh~-------------~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 639 SPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAHP-------------DVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred CCcccccchhH--HHHHHHHhcCCceEEEEechhhcCH-------------HHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 235665443 3667777777779999999988532 2345555666532 22335688
Q ss_pred EEeccCCc
Q 010975 357 VLAATNLP 364 (496)
Q Consensus 357 VIatTn~p 364 (496)
||+|+|.-
T Consensus 704 ~IMTsn~~ 711 (898)
T KOG1051|consen 704 FIMTSNVG 711 (898)
T ss_pred EEEecccc
Confidence 99998763
No 232
>PF13173 AAA_14: AAA domain
Probab=98.53 E-value=6.7e-08 Score=85.73 Aligned_cols=69 Identities=29% Similarity=0.385 Sum_probs=47.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 320 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L 320 (496)
+.++|+||+|||||++++.+++.+. .+++.+++.+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999886 78888887765432111101 222222222224579999999887
No 233
>PRK06921 hypothetical protein; Provisional
Probab=98.48 E-value=9.8e-08 Score=95.50 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=45.2
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHH
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 319 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~ 319 (496)
..+++|+||||+|||+|+.++|+++ +..++.++..++........ ......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 3689999999999999999999987 56677777666544322111 1111222222 2347999999943
No 234
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=6.7e-07 Score=78.62 Aligned_cols=72 Identities=24% Similarity=0.431 Sum_probs=47.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh--------cceeeeeeccccccc--------------cc--CChHHHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISASSVVSK--------------WR--GDSEKLIKVLFELAR 305 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l--------~~~~i~v~~s~l~~~--------------~~--G~~e~~l~~lf~~a~ 305 (496)
+.++++||||+|||++++.+++.+ ..+++.+++...... .. .........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 579999999999999999999988 677777776543310 01 122333444445555
Q ss_pred hcCCcceehhhHHHHH
Q 010975 306 HHAPSTIFLDEIDAII 321 (496)
Q Consensus 306 ~~~p~ILfIDEID~L~ 321 (496)
.....+|+|||+|.+.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5444599999999985
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.43 E-value=1.3e-07 Score=94.00 Aligned_cols=68 Identities=28% Similarity=0.426 Sum_probs=49.5
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccC-----ChHHHHHHHHHHhhhcCCcceehhhHHH
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRG-----DSEKLIKVLFELARHHAPSTIFLDEIDA 319 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G-----~~e~~l~~lf~~a~~~~p~ILfIDEID~ 319 (496)
...+++|+||||||||+||-||++++ |.++..++..+++.+... ..+..+... .. +..+|+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~--~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LK--KVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hh--cCCEEEEecccC
Confidence 34789999999999999999999988 788888888888765332 222222221 22 236999999965
Q ss_pred H
Q 010975 320 I 320 (496)
Q Consensus 320 L 320 (496)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 4
No 236
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.42 E-value=1.9e-07 Score=101.08 Aligned_cols=181 Identities=22% Similarity=0.274 Sum_probs=114.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh--cceeeeeeccccccc---------ccCChH----HHHHHHHHHhhhcCCcceeh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSK---------WRGDSE----KLIKVLFELARHHAPSTIFL 314 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l--~~~~i~v~~s~l~~~---------~~G~~e----~~l~~lf~~a~~~~p~ILfI 314 (496)
-.+++.|.|||||-.++|++.+.. ..+|+.++|..+... ..|.+. +-.+..++.+.. +.||+
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFl 413 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFL 413 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHH
Confidence 479999999999999999999877 568999999654332 223322 222223334433 79999
Q ss_pred hhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc--c-----ccHHHHHHhhhhhcccCCCHH
Q 010975 315 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--E-----LDAAMLRRLEKRILVPLPDTE 387 (496)
Q Consensus 315 DEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~--~-----Ld~aL~rRf~~~I~~~~P~~e 387 (496)
|||..|.-..+ ....+.+.+.-+.-+++.. ..-.|.||++|+.+- . +-+.|.=|... ..+.+|...
T Consensus 414 deIgd~p~~~Q-----s~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~-~~i~lP~lr 486 (606)
T COG3284 414 DEIGDMPLALQ-----SRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNA-FVITLPPLR 486 (606)
T ss_pred HHhhhchHHHH-----HHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcC-eeeccCchh
Confidence 99988864422 2223344444444455555 555688999998872 1 23333336644 677788777
Q ss_pred HHHH---HHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCC
Q 010975 388 ARRA---MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 451 (496)
Q Consensus 388 eR~~---Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~ 451 (496)
+|.. ++.+++.++.. ... ..+++.+..+....|.+++|++.+.++.....+++
T Consensus 487 ~R~d~~~~l~~~~~~~~~-~~~----------~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~ 542 (606)
T COG3284 487 ERSDRIPLLDRILKREND-WRL----------QLDDDALARLLAYRWPGNIRELDNVIERLAALSDG 542 (606)
T ss_pred cccccHHHHHHHHHHccC-CCc----------cCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCC
Confidence 7764 55555544332 111 13445667789999999999999888766554433
No 237
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.42 E-value=4.1e-08 Score=94.21 Aligned_cols=178 Identities=21% Similarity=0.285 Sum_probs=91.7
Q ss_pred hcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc---eeeeeec-ccc---------
Q 010975 219 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---TFFNISA-SSV--------- 285 (496)
Q Consensus 219 iG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---~~i~v~~-s~l--------- 285 (496)
+|.+...+.|.+.+... +...++|+||+|+|||+|++.+.+.... ..+.+.. ...
T Consensus 2 ~gR~~el~~l~~~l~~~------------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLESG------------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh------------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 67788888888876431 2367999999999999999999998822 2222211 000
Q ss_pred ------------ccc-------------ccCChHHHHHHHHHHhhhcC-CcceehhhHHHHH-hhhcCCcchhHHhhhhh
Q 010975 286 ------------VSK-------------WRGDSEKLIKVLFELARHHA-PSTIFLDEIDAII-SQRGEARSEHEASRRLK 338 (496)
Q Consensus 286 ------------~~~-------------~~G~~e~~l~~lf~~a~~~~-p~ILfIDEID~L~-~~r~~~~~~~~~~~~i~ 338 (496)
... ........+..+++...... ..||+|||++.+. ... ....+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--------~~~~~~ 141 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--------EDKDFL 141 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--------TTHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--------chHHHH
Confidence 000 00112344555666555432 3799999999986 111 012333
Q ss_pred hhhhhhccCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC---CCCCcce
Q 010975 339 TELLIQMDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE---ESLPYDL 410 (496)
Q Consensus 339 ~~Ll~~ld~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~---~~~~l~~ 410 (496)
..+...++.........+|++++.... .-..++..|+.. +.+++.+.++..++++..+... .. .+.+++.
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~ 219 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEE 219 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHHHH
T ss_pred HHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHH
Confidence 445555554333444444555554221 112234558877 9999999999999999876554 21 2333444
Q ss_pred eeecccCC
Q 010975 411 LVERTEGY 418 (496)
Q Consensus 411 la~~t~g~ 418 (496)
+...+.|.
T Consensus 220 i~~~~gG~ 227 (234)
T PF01637_consen 220 IYSLTGGN 227 (234)
T ss_dssp HHHHHTT-
T ss_pred HHHHhCCC
Confidence 55555554
No 238
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.41 E-value=2.5e-07 Score=100.52 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=55.3
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..|++++.+.+.+||.-..+-.++++.++...... ..+.+-+||+||||||||++++.+|++++..+.+-
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~-------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG-------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 56788899999999999988888888887543221 11234688999999999999999999998877653
No 239
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.41 E-value=1.6e-07 Score=94.30 Aligned_cols=143 Identities=24% Similarity=0.325 Sum_probs=76.0
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcce---eeeeecccccccccCChHHHHHHHHHHh----h-------hcCCcceeh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKWRGDSEKLIKVLFELA----R-------HHAPSTIFL 314 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~---~i~v~~s~l~~~~~G~~e~~l~~lf~~a----~-------~~~p~ILfI 314 (496)
.+++||+||+|||||++++..-+.+... ...++++... +...+..+++.. + ..+..|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 4789999999999999999988766332 2233333221 222233222211 1 122359999
Q ss_pred hhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC--c-cccCcEEEEEeccCCcc---cccHHHHHHhhhhhcccCCCHHH
Q 010975 315 DEIDAIISQRGEARSEHEASRRLKTELLIQMDG--L-TQSDELVFVLAATNLPW---ELDAAMLRRLEKRILVPLPDTEA 388 (496)
Q Consensus 315 DEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--~-~~~~~~viVIatTn~p~---~Ld~aL~rRf~~~I~~~~P~~ee 388 (496)
||++.-..+.-+.....+..+++.+.- -..|. . ...-..+.+||+++.+. .+++++.|.|. ++.++.|+.++
T Consensus 107 DDlN~p~~d~ygtq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~p~~~s 184 (272)
T PF12775_consen 107 DDLNMPQPDKYGTQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPYPSDES 184 (272)
T ss_dssp ETTT-S---TTS--HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE-EEE----TCCH
T ss_pred cccCCCCCCCCCCcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE-EEEecCCChHH
Confidence 999876655433322222222222110 00110 0 01123467788887542 48888888885 49999999999
Q ss_pred HHHHHHhhCCC
Q 010975 389 RRAMFESLLPS 399 (496)
Q Consensus 389 R~~Il~~~l~~ 399 (496)
...|+..++..
T Consensus 185 l~~If~~il~~ 195 (272)
T PF12775_consen 185 LNTIFSSILQS 195 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99988777653
No 240
>PRK09183 transposase/IS protein; Provisional
Probab=98.40 E-value=1.2e-07 Score=94.51 Aligned_cols=72 Identities=26% Similarity=0.355 Sum_probs=48.0
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC-hHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAI 320 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~-~e~~l~~lf~~a~~~~p~ILfIDEID~L 320 (496)
...+++|+||||||||+|+.+++... |..+..++..++...+... ....+..++... ...+.+++|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 34689999999999999999998765 6677777776665432211 111233344332 234579999999764
No 241
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.35 E-value=5.7e-07 Score=97.51 Aligned_cols=176 Identities=21% Similarity=0.204 Sum_probs=90.4
Q ss_pred hhhcchHHHHHHhhhhcccccCcccccc-ccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee-cccccc--cccCC
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS-ASSVVS--KWRGD 292 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~-~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~-~s~l~~--~~~G~ 292 (496)
+|+|+|++|+-|.-.+.--.. .+.... .....-++||+|.||||||.+.+.+++.+.+-.+.-- ++.-++ .|+-.
T Consensus 430 sIye~edvKkglLLqLfGGt~-k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr 508 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTR-KEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK 508 (804)
T ss_pred hhhcccchhhhHHHHHhcCCc-ccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe
Confidence 689999999987655533222 111111 1333468999999999999999999998844433211 010000 00000
Q ss_pred hHHHHHHHHHHhh---hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc----
Q 010975 293 SEKLIKVLFELAR---HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---- 365 (496)
Q Consensus 293 ~e~~l~~lf~~a~---~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~---- 365 (496)
....+++.-+.. ....+|-.|||+|+|....+...-+.+..+.+.-+..-.+-.+ +.+.-|+|++|...
T Consensus 509 -d~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sL---NAR~SVLAaANP~~skyn 584 (804)
T KOG0478|consen 509 -DPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASL---NARCSVLAAANPIRSKYN 584 (804)
T ss_pred -cCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeec---cccceeeeeeccccccCC
Confidence 000011111110 1223799999999995432221111111111111111111112 22344888888542
Q ss_pred ---------cccHHHHHHhhhhhcc-cCCCHHHHHHHHHhhC
Q 010975 366 ---------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLL 397 (496)
Q Consensus 366 ---------~Ld~aL~rRf~~~I~~-~~P~~eeR~~Il~~~l 397 (496)
.|++.|++||+.++.+ ..||+..-+.|..++.
T Consensus 585 p~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 585 PNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred CCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 2889999999975443 5566654445555443
No 242
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.33 E-value=4.4e-07 Score=99.85 Aligned_cols=124 Identities=13% Similarity=0.060 Sum_probs=84.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeecccccccccCCh--HHHHH--------HHHHHhhhcCCcceehhhH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEI 317 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~l~~~~~G~~--e~~l~--------~lf~~a~~~~p~ILfIDEI 317 (496)
.||+|.|++|||||+++++++..+. .+|+.+..+.-....+|.. +..++ .++..|.. +||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 6899999999999999999999884 4888777655444444432 12111 12233322 79999999
Q ss_pred HHHHhhhcCCcchhHHhhhhhhhhhhhccCc---------c-ccCcEEEEEeccCCc---ccccHHHHHHhhhhhcccCC
Q 010975 318 DAIISQRGEARSEHEASRRLKTELLIQMDGL---------T-QSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLP 384 (496)
Q Consensus 318 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~---------~-~~~~~viVIatTn~p---~~Ld~aL~rRf~~~I~~~~P 384 (496)
..+. ..+++.|++.|+.- . ..+..+++|+|-|.. +.+++++++||...+.++.|
T Consensus 103 n~~~-------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 103 ERLE-------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred ccCC-------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 7763 34556677766532 1 123457778874432 34999999999999999988
Q ss_pred CHHHH
Q 010975 385 DTEAR 389 (496)
Q Consensus 385 ~~eeR 389 (496)
+..+.
T Consensus 170 ~~~~~ 174 (584)
T PRK13406 170 ALRDA 174 (584)
T ss_pred ChHHh
Confidence 76543
No 243
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.31 E-value=5.7e-07 Score=94.54 Aligned_cols=208 Identities=19% Similarity=0.202 Sum_probs=115.6
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChH
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE 294 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e 294 (496)
+|+|.+++|+.|.-.+.-..... ...+ ++..-+|+|.|.||+.||-|.+.+.+-.-+..+..-.++ ..+|-+.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~--~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLTA 417 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKS--PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLTA 417 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCC--CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccch
Confidence 69999999999887665432211 1111 334457999999999999999999987755555432211 1222222
Q ss_pred HHHHHHH-HHh-------hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc-ccCcEEEEEeccCCcc
Q 010975 295 KLIKVLF-ELA-------RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLPW 365 (496)
Q Consensus 295 ~~l~~lf-~~a-------~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-~~~~~viVIatTn~p~ 365 (496)
..++.-. .+. --...+|-.|||+|++...-. ..-|++..+..-.+- -.|+. .-+.+..|+|++|..+
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR--tAIHEVMEQQTISIa--KAGI~TtLNAR~sILaAANPay 493 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR--TAIHEVMEQQTISIA--KAGINTTLNARTSILAAANPAY 493 (721)
T ss_pred hhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh--HHHHHHHHhhhhhhh--hhccccchhhhHHhhhhcCccc
Confidence 2222100 000 001236899999999964321 122222221110000 01111 1123456888888664
Q ss_pred -------------cccHHHHHHhhhhhcc-cCCCHHHHHHHHHhhCCCCCC--CCCCCcc-----------eeeecccCC
Q 010975 366 -------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQTG--EESLPYD-----------LLVERTEGY 418 (496)
Q Consensus 366 -------------~Ld~aL~rRf~~~I~~-~~P~~eeR~~Il~~~l~~~~~--~~~~~l~-----------~la~~t~g~ 418 (496)
.|+.+|++||+..+.+ ..|+.+.-..+.++..--+.. ....+++ .+++...-+
T Consensus 494 GRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~ 573 (721)
T KOG0482|consen 494 GRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPV 573 (721)
T ss_pred cccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCC
Confidence 3889999999976655 568888777777776532222 1221111 144555556
Q ss_pred cCCchhhcchhhhcc
Q 010975 419 SGSDIRLVSKEAAMQ 433 (496)
Q Consensus 419 s~~dI~~l~~~A~~~ 433 (496)
.+.++...+..|-..
T Consensus 574 vp~~l~dyi~~AYv~ 588 (721)
T KOG0482|consen 574 VPEALADYITGAYVE 588 (721)
T ss_pred CCHHHHHHHHHHHHH
Confidence 667777666555444
No 244
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.31 E-value=4.2e-07 Score=97.83 Aligned_cols=197 Identities=20% Similarity=0.170 Sum_probs=111.1
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee----ccccccccc
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS----ASSVVSKWR 290 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~----~s~l~~~~~ 290 (496)
+-.|+|.+.+|.-|.-.+.--......-.-.++..-+|++.|.||+|||-+.++++.-+-+.++.-- .+.|....+
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVv 423 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVV 423 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEE
Confidence 4578999999998765443222111110111444568999999999999999999998865544321 111211111
Q ss_pred CChHHHHHHHHHHhh---hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC---------ccc-cCcEEEE
Q 010975 291 GDSEKLIKVLFELAR---HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG---------LTQ-SDELVFV 357 (496)
Q Consensus 291 G~~e~~l~~lf~~a~---~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~---------~~~-~~~~viV 357 (496)
...+. ....-+|. -...+|-.|||+|+|-...+ .++.+.|+. +.. -+.+.-|
T Consensus 424 kD~es--gdf~iEAGALmLADnGICCIDEFDKMd~~dq-------------vAihEAMEQQtISIaKAGv~aTLnARtSI 488 (764)
T KOG0480|consen 424 KDEES--GDFTIEAGALMLADNGICCIDEFDKMDVKDQ-------------VAIHEAMEQQTISIAKAGVVATLNARTSI 488 (764)
T ss_pred ecCCC--CceeeecCcEEEccCceEEechhcccChHhH-------------HHHHHHHHhheehheecceEEeecchhhh
Confidence 00000 00000111 01237999999999843211 223333331 110 1123447
Q ss_pred EeccCCcc-------------cccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCch
Q 010975 358 LAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 423 (496)
Q Consensus 358 IatTn~p~-------------~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI 423 (496)
+|++|+.. .+++++.+||+. .|.+..|++..-..|.++++..+..- ++.......|+-.++
T Consensus 489 lAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i-----~~~~~~~~~~~~e~v 563 (764)
T KOG0480|consen 489 LAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGI-----DDATERVCVYTLEQV 563 (764)
T ss_pred hhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccc-----cccccccccccHHHH
Confidence 88888762 288999999985 45668899988888888887654322 222223345666666
Q ss_pred hhcchhhh
Q 010975 424 RLVSKEAA 431 (496)
Q Consensus 424 ~~l~~~A~ 431 (496)
+.+++.|.
T Consensus 564 rkYi~yAR 571 (764)
T KOG0480|consen 564 RKYIRYAR 571 (764)
T ss_pred HHHHHHHH
Confidence 66665443
No 245
>PF05729 NACHT: NACHT domain
Probab=98.28 E-value=3e-06 Score=77.03 Aligned_cols=140 Identities=18% Similarity=0.219 Sum_probs=72.3
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcc--------e-eeeeecccccccc------------cCChHHHHHH-HHHHhhhcC
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKT--------T-FFNISASSVVSKW------------RGDSEKLIKV-LFELARHHA 308 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~--------~-~i~v~~s~l~~~~------------~G~~e~~l~~-lf~~a~~~~ 308 (496)
-++|+|+||+|||++++.++..+.. . .+.+.+.+....- .......... +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4789999999999999999987711 1 2233332222110 0001111111 112223344
Q ss_pred CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhh--hhcccCCCH
Q 010975 309 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEK--RILVPLPDT 386 (496)
Q Consensus 309 p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~--~I~~~~P~~ 386 (496)
..+|+||.+|.+...... .........+...+.......-. ++.|++.. .... +.+++.. .+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~~~--liit~r~~-~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLPQALPPGVK--LIITSRPR-AFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-----hHHHHHHHHHHHHhhhccCCCCe--EEEEEcCC-hHHH-HHHhcCCCcEEEECCCCH
Confidence 578999999999654221 01112222232333321122222 33343322 2221 4444433 378888899
Q ss_pred HHHHHHHHhhCCC
Q 010975 387 EARRAMFESLLPS 399 (496)
Q Consensus 387 eeR~~Il~~~l~~ 399 (496)
++..++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
No 246
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.25 E-value=7.4e-08 Score=99.34 Aligned_cols=168 Identities=25% Similarity=0.303 Sum_probs=85.0
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec-----ccccccccC
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA-----SSVVSKWRG 291 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~-----s~l~~~~~G 291 (496)
.|+|.+.+|..|.-.+.........-....+..-|+||.|.||||||.|.+.+++.....++ +++ ..+.....-
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCccceecc
Confidence 58999999998776554433221111111334458999999999999999998876644443 221 122111100
Q ss_pred ---ChHHHHH-HHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC---------cc-ccCcEEEE
Q 010975 292 ---DSEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFV 357 (496)
Q Consensus 292 ---~~e~~l~-~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~viV 357 (496)
..+..+. ..+-.|.. +|++|||+|.+.... ...|++.|+. +. .-+.+.-|
T Consensus 104 d~~~~~~~leaGalvlad~---GiccIDe~dk~~~~~-------------~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLADG---GICCIDEFDKMKEDD-------------RDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp CGGTSSECEEE-HHHHCTT---SEEEECTTTT--CHH-------------HHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred ccccceeEEeCCchhcccC---ceeeecccccccchH-------------HHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 0000011 12222333 899999999985421 1334444431 11 11234668
Q ss_pred EeccCCcc-------------cccHHHHHHhhhhhcc-cCCCHHHHHHHHHhhCCCCC
Q 010975 358 LAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 358 IatTn~p~-------------~Ld~aL~rRf~~~I~~-~~P~~eeR~~Il~~~l~~~~ 401 (496)
+|++|... .++++|++||+.++.+ ..|+.+.-..+.++.+....
T Consensus 168 laa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~ 225 (331)
T PF00493_consen 168 LAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHR 225 (331)
T ss_dssp EEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT-
T ss_pred HHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccc
Confidence 88988664 3778999999987655 66776666677777765543
No 247
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.21 E-value=2.2e-06 Score=86.57 Aligned_cols=162 Identities=19% Similarity=0.260 Sum_probs=101.8
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHh---hhcceeeeeeccccc------
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT---ECKTTFFNISASSVV------ 286 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~---~l~~~~i~v~~s~l~------ 286 (496)
..+.|..+..+.+.+++..-.... ..++|++.||.|+|||++...... +.|-+++.+......
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~g--------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHG--------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhc--------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 357888887777877775544333 347899999999999987655533 556666655432211
Q ss_pred ---------------ccccCChHHHHHHHHHHhhh-----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975 287 ---------------SKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 346 (496)
Q Consensus 287 ---------------~~~~G~~e~~l~~lf~~a~~-----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 346 (496)
.+..|.+...+..++...+. ..+.|.++||+|..++... + ..+++.+|
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r----------Q--tllYnlfD 163 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR----------Q--TLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh----------h--HHHHHHHH
Confidence 12334555555555544432 1223455589998865421 1 22445555
Q ss_pred CccccCcEEEEEeccCCc---ccccHHHHHHhhhh-hcccC-CCHHHHHHHHHhhC
Q 010975 347 GLTQSDELVFVLAATNLP---WELDAAMLRRLEKR-ILVPL-PDTEARRAMFESLL 397 (496)
Q Consensus 347 ~~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~~-I~~~~-P~~eeR~~Il~~~l 397 (496)
-......+++||+.|.+. +.+...+.+||... |.+++ ...++-..+++..+
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 444445567788777666 45778899999766 55443 37888888988887
No 248
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=2.3e-06 Score=86.20 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=78.0
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeeeec--------ccc---cccccC--ChHHHHHHHHHHhhh----cCCcc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------SSV---VSKWRG--DSEKLIKVLFELARH----HAPST 311 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~--------s~l---~~~~~G--~~e~~l~~lf~~a~~----~~p~I 311 (496)
++.+||+||+|+||+.+|.++|+.+-+.--.-.| .++ .....+ -.-..++.+.+.+.. ....|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 4679999999999999999999988432000001 111 101000 123345555554432 23359
Q ss_pred eehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCC
Q 010975 312 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 384 (496)
Q Consensus 312 LfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P 384 (496)
++||++|.|... ..+.||+.++ .++..+++|..|+.++.+.+.++||+.. +.|+.+
T Consensus 99 ~ii~~ad~mt~~-------------AaNaLLK~LE---EPp~~~~fiL~~~~~~~ll~TI~SRcq~-~~~~~~ 154 (290)
T PRK05917 99 YIIHEADRMTLD-------------AISAFLKVLE---DPPQHGVIILTSAKPQRLPPTIRSRSLS-IHIPME 154 (290)
T ss_pred EEEechhhcCHH-------------HHHHHHHHhh---cCCCCeEEEEEeCChhhCcHHHHhcceE-EEccch
Confidence 999999998532 3477888887 3455577778888899999999999966 777654
No 249
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.19 E-value=4.2e-06 Score=83.31 Aligned_cols=95 Identities=17% Similarity=0.099 Sum_probs=59.7
Q ss_pred cccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC-cceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975 364 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 364 p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~-l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
|..++-.+++|+ .+|...+++.++.+.||+..+.+.....+.+ ++.+......-+-+.--.|+..|.+.+.+|.
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk---- 413 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK---- 413 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc----
Confidence 356899999999 5588888999999999999987766553332 2323333332222222334455555555541
Q ss_pred hccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975 443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 477 (496)
Q Consensus 443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~ 477 (496)
...++.+|++++-+.+--...
T Consensus 414 --------------~~~v~~~di~r~y~LFlD~~R 434 (454)
T KOG2680|consen 414 --------------GKVVEVDDIERVYRLFLDEKR 434 (454)
T ss_pred --------------CceeehhHHHHHHHHHhhhhh
Confidence 123778899988877654433
No 250
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.19 E-value=2.1e-06 Score=88.30 Aligned_cols=81 Identities=33% Similarity=0.383 Sum_probs=55.3
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeecccccccccCC
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGD 292 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~l~~~~~G~ 292 (496)
-+.++|+.++++..--++.+-.. . --..+++||.||||||||.||-++|+++| .||+.++++++.+.....
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~-~------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK 95 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKE-G------KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK 95 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHT-T--------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred cccccChHHHHHHHHHHHHHHhc-c------cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence 46799999999987655543221 1 12347899999999999999999999996 899999999998765544
Q ss_pred hHHHHHHHHHH
Q 010975 293 SEKLIKVLFEL 303 (496)
Q Consensus 293 ~e~~l~~lf~~ 303 (496)
++ .+.+.|++
T Consensus 96 TE-~L~qa~Rr 105 (398)
T PF06068_consen 96 TE-ALTQAFRR 105 (398)
T ss_dssp HH-HHHHHHHC
T ss_pred hH-HHHHHHHH
Confidence 44 34444543
No 251
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.14 E-value=7.9e-07 Score=98.40 Aligned_cols=169 Identities=25% Similarity=0.288 Sum_probs=96.1
Q ss_pred chhhcchHHHHHHhhhhcccccCcccccc--ccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee-cc---cccccc
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS-AS---SVVSKW 289 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~--~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~-~s---~l~~~~ 289 (496)
-.+.|.+.+|+.|.-.+..... +.... .++..-|+||.|.||||||.|.+.+++.+-+.++.-- ++ .|....
T Consensus 286 PsIyG~e~VKkAilLqLfgGv~--k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav 363 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGVK--KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV 363 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCCc--ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEE
Confidence 3699999999987755533221 11111 1334468999999999999999999998855443221 11 111111
Q ss_pred cCChHHHHHHHHHHhh---hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc---------Ccc-ccCcEEE
Q 010975 290 RGDSEKLIKVLFELAR---HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD---------GLT-QSDELVF 356 (496)
Q Consensus 290 ~G~~e~~l~~lf~~a~---~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld---------~~~-~~~~~vi 356 (496)
..... ...+.-++. ...++|.+|||+|++...- ...+...|+ |+. .-+.+.-
T Consensus 364 ~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d-------------r~aihEaMEQQtIsIaKAGI~atLnARcs 428 (682)
T COG1241 364 VRDKV--TGEWVLEAGALVLADGGVCCIDEFDKMNEED-------------RVAIHEAMEQQTISIAKAGITATLNARCS 428 (682)
T ss_pred EEccC--CCeEEEeCCEEEEecCCEEEEEeccCCChHH-------------HHHHHHHHHhcEeeecccceeeecchhhh
Confidence 00000 000110111 1235899999999873221 122333332 111 1123455
Q ss_pred EEeccCCcc-------------cccHHHHHHhhhhhcc-cCCCHHHHHHHHHhhCCCCC
Q 010975 357 VLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 357 VIatTn~p~-------------~Ld~aL~rRf~~~I~~-~~P~~eeR~~Il~~~l~~~~ 401 (496)
|+|++|... .++++|++||+.++.+ ..|+.+.-..+.++.+..+.
T Consensus 429 vLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~ 487 (682)
T COG1241 429 VLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHR 487 (682)
T ss_pred hhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHh
Confidence 788888774 2889999999976555 45777666667776665443
No 252
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.13 E-value=1.8e-06 Score=88.07 Aligned_cols=69 Identities=23% Similarity=0.390 Sum_probs=47.3
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCCh-HHHHHHHHHHhhhcCCcceehhhHHH
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDA 319 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~-e~~l~~lf~~a~~~~p~ILfIDEID~ 319 (496)
.+|++|+||+|||||+|+.++|+++ |.++..+...++........ .......++... ...+|+|||+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 4799999999999999999999998 67777777766654432111 011223333333 346999999954
No 253
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.13 E-value=1e-05 Score=86.31 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=52.9
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccc-cCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPI-KYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~-~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
..|.+++.+.+.++|.-..+-+.++++++.... ..+. ...+-+||+||+||||||.++.+++++|..+++-.
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~------l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK------LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC------CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 457788888889998887777777777665110 0111 12245899999999999999999999998887544
No 254
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=7.3e-06 Score=81.18 Aligned_cols=121 Identities=11% Similarity=0.022 Sum_probs=78.1
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec--------------cccccccc---CChHHHHHHHHHHhhh---
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------------SSVVSKWR---GDSEKLIKVLFELARH--- 306 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~--------------s~l~~~~~---G~~e~~l~~lf~~a~~--- 306 (496)
.++..+||+||+|+||..+|.++|+.+-+.--.-.| .++.--+. .-....++.+.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 345789999999999999999999977221000001 11110000 1122334444443321
Q ss_pred --cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCC
Q 010975 307 --HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 384 (496)
Q Consensus 307 --~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P 384 (496)
....|++||++|.|.. ...+.||+.++ .++..+++|.+|+.++.+.+.++||+.. +.++.+
T Consensus 85 e~~~~KV~II~~ae~m~~-------------~AaNaLLK~LE---EPp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK-------------QSANSLLKLIE---EPPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhCH-------------HHHHHHHHhhc---CCCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 2346999999999843 23477888887 4555677888899999999999999966 666665
No 255
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.03 E-value=1.3e-05 Score=72.20 Aligned_cols=72 Identities=25% Similarity=0.397 Sum_probs=47.0
Q ss_pred eeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----------------------cc--CChHHHHHHHHHHh
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------------WR--GDSEKLIKVLFELA 304 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----------------------~~--G~~e~~l~~lf~~a 304 (496)
++|+||||+|||+++..++... +.+++.++....... .. .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 456666654322210 00 11111122234445
Q ss_pred hhcCCcceehhhHHHHHhh
Q 010975 305 RHHAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 305 ~~~~p~ILfIDEID~L~~~ 323 (496)
....|.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5667889999999998754
No 256
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=1.8e-05 Score=80.04 Aligned_cols=143 Identities=12% Similarity=0.097 Sum_probs=87.9
Q ss_pred chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceee--eeec--------------cc
Q 010975 221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF--NISA--------------SS 284 (496)
Q Consensus 221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i--~v~~--------------s~ 284 (496)
+..+++.+...+... ..+..+||+|| +||+++|+.+|+.+.+.-- .-.| .+
T Consensus 7 q~~~~~~L~~~~~~~-----------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILEQD-----------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 345566666655432 23467999996 6899999999997732100 0000 11
Q ss_pred ccccc-cCC--hHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975 285 VVSKW-RGD--SEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 357 (496)
Q Consensus 285 l~~~~-~G~--~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 357 (496)
+.--. .|. .-..++.+...+.. ....|++||++|.|... ..+.||+.++ .++..+++
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLE---EPp~~t~~ 137 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIE---EPQSEIYI 137 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhc---CCCCCeEE
Confidence 10000 011 23455555554432 23359999999998432 3477888887 34455667
Q ss_pred EeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHH
Q 010975 358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 394 (496)
Q Consensus 358 IatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~ 394 (496)
|.+|+.++.+-+.++||+.. +.|+. +.++..+++.
T Consensus 138 iL~t~~~~~lLpTI~SRcq~-i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 138 FLLTNDENKVLPTIKSRTQI-FHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEECChhhCchHHHHccee-eeCCC-cHHHHHHHHH
Confidence 77888899999999999966 88865 5555555554
No 257
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.98 E-value=7.5e-06 Score=80.26 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=71.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~ 329 (496)
.+-.++||+|||||.+++.+|+.+|..++.++|++..+ ...+.+++.-+.... +.+++||++.+....-..
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl~~~vLS~-- 103 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRLSEEVLSV-- 103 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSSHHHHHH--
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhhhHHHHHH--
Confidence 46778999999999999999999999999999988643 355666666555544 799999998873321000
Q ss_pred hhHHhhhhhhhhhhhcc-----C--ccccCcEEEEEeccCCc----ccccHHHHHHhhhhhcccCCCHHHHHHH
Q 010975 330 EHEASRRLKTELLIQMD-----G--LTQSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAM 392 (496)
Q Consensus 330 ~~~~~~~i~~~Ll~~ld-----~--~~~~~~~viVIatTn~p----~~Ld~aL~rRf~~~I~~~~P~~eeR~~I 392 (496)
-.+..+.+...+...-. + +.-.. ..-+..|.|.. ..+++.++.-| +.+.+..||.+.-.++
T Consensus 104 i~~~i~~i~~al~~~~~~~~~~g~~i~l~~-~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 104 ISQQIQSIQDALRAKQKSFTLEGQEIKLNP-NCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHCTSSEEEETTCEEE--T-T-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccCCCEEEEcc-ceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 00001111111111100 0 00111 12344455643 46888888777 5588889996655554
No 258
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.98 E-value=4.5e-06 Score=71.82 Aligned_cols=26 Identities=42% Similarity=0.814 Sum_probs=22.4
Q ss_pred eeeeCCCCChhHHHHHHHHhhhccee
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTF 277 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~ 277 (496)
|.|+||||+|||++|+.++..+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999885433
No 259
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.96 E-value=6.7e-06 Score=79.90 Aligned_cols=111 Identities=21% Similarity=0.264 Sum_probs=58.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc--cc--------ccccCChHHHHHHHHHHhh--hcCCcceehhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS--VV--------SKWRGDSEKLIKVLFELAR--HHAPSTIFLDE 316 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~--l~--------~~~~G~~e~~l~~lf~~a~--~~~p~ILfIDE 316 (496)
+..+||||+||+|||++|+.++.. .-++..+.+. +. .......-..+...+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 356999999999999999999742 2222222211 00 0001112223333333332 23467999999
Q ss_pred HHHHHh------hhcCCc--chhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975 317 IDAIIS------QRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 361 (496)
Q Consensus 317 ID~L~~------~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT 361 (496)
++.+.. .+.... .+......+...++..+..+...+.+|++++-.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 999865 221111 111222334455666665555556666666544
No 260
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=2.9e-05 Score=78.94 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=83.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcce-------------eeeeecccccccccCChHHHHHHHHHHhhh-----cCCcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTT-------------FFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPST 311 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~-------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~-----~~p~I 311 (496)
+.+||+|+.|.||+.+|+.+++.+.+. +..++.. +.. -.-..++.+.+.... ....|
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCceE
Confidence 568899999999999999999987221 1112100 010 112345555554432 24469
Q ss_pred eehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHH
Q 010975 312 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRA 391 (496)
Q Consensus 312 LfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~ 391 (496)
++||++|.+.. ...+.|+..++. .+..+++|.+|+.++.+-+++++|+.. +.+.+++.++...
T Consensus 94 vII~~~e~m~~-------------~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc~~-~~f~~l~~~~l~~ 156 (299)
T PRK07132 94 LIIKNIEKTSN-------------SLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRCQV-FNVKEPDQQKILA 156 (299)
T ss_pred EEEecccccCH-------------HHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCeEE-EECCCCCHHHHHH
Confidence 99999987732 234678888873 444456666677888899999999966 9999999888877
Q ss_pred HHHh
Q 010975 392 MFES 395 (496)
Q Consensus 392 Il~~ 395 (496)
.+..
T Consensus 157 ~l~~ 160 (299)
T PRK07132 157 KLLS 160 (299)
T ss_pred HHHH
Confidence 6654
No 261
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.93 E-value=1.1e-05 Score=80.72 Aligned_cols=166 Identities=22% Similarity=0.139 Sum_probs=82.9
Q ss_pred hHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh--hcce---eeeeecccccc---------
Q 010975 222 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE--CKTT---FFNISASSVVS--------- 287 (496)
Q Consensus 222 e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~--l~~~---~i~v~~s~l~~--------- 287 (496)
|..+++|.+.+.... ...+.+.|+|++|+|||+||+.+++. .... ++.++.+.-..
T Consensus 2 e~~~~~l~~~L~~~~----------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~ 71 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS----------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQIL 71 (287)
T ss_dssp HHHHHHHHHHHHTTT----------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC----------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccc
Confidence 445566666554321 12357999999999999999999988 3222 23333322110
Q ss_pred -----c-----ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975 288 -----K-----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 357 (496)
Q Consensus 288 -----~-----~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 357 (496)
. .....+.....+.+... ..+++|+||+++... ....+...+. .......|
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~---------------~~~~l~~~~~---~~~~~~ki 132 (287)
T PF00931_consen 72 RQLGEPDSSISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEE---------------DLEELREPLP---SFSSGSKI 132 (287)
T ss_dssp HHHTCC-STSSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHH---------------HH-------H---CHHSS-EE
T ss_pred ccccccccccccccccccccccchhhhc-cccceeeeeeecccc---------------cccccccccc---cccccccc
Confidence 0 01122333333433333 347899999986542 1111221111 11112335
Q ss_pred EeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC----CCCCcceeeecccCC
Q 010975 358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE----ESLPYDLLVERTEGY 418 (496)
Q Consensus 358 IatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~----~~~~l~~la~~t~g~ 418 (496)
|.||....... ..... ...+.++..+.++-.+++.......... .......+++.+.|.
T Consensus 133 lvTTR~~~v~~-~~~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 133 LVTTRDRSVAG-SLGGT-DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp EEEESCGGGGT-THHSC-EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred ccccccccccc-ccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55776653221 11111 3558888899999999999887554411 111233456666654
No 262
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.91 E-value=1.8e-05 Score=92.39 Aligned_cols=146 Identities=22% Similarity=0.215 Sum_probs=89.5
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc------ccc-c----CChHHHHHHHHHHhhhcCCcceehhhH
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------SKW-R----GDSEKLIKVLFELARHHAPSTIFLDEI 317 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~------~~~-~----G~~e~~l~~lf~~a~~~~p~ILfIDEI 317 (496)
.+++||.|.||+|||+|+.++|+..|..+++++.++-. +.+ . |+..-.-.-++...+. ..-+++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~--G~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--GGWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc--CCEEEeehh
Confidence 36799999999999999999999999999999986532 222 1 2111111112222222 368999999
Q ss_pred HHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc------cccHHHHHHhhhhhcccCCCHHHHHH
Q 010975 318 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRILVPLPDTEARRA 391 (496)
Q Consensus 318 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~------~Ld~aL~rRf~~~I~~~~P~~eeR~~ 391 (496)
.......-++....- ..-..+.+-.+|-.-.-..+..|.||-|..+ .++..+..||.+ +.+...+.++...
T Consensus 1621 NLaSQSVlEGLNacL--DhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsv-V~~d~lt~dDi~~ 1697 (4600)
T COG5271 1621 NLASQSVLEGLNACL--DHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSV-VKMDGLTTDDITH 1697 (4600)
T ss_pred hhhHHHHHHHHHHHH--hhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhhe-EEecccccchHHH
Confidence 764322111100000 0000122222332222234466777766554 499999999966 9999999999999
Q ss_pred HHHhhCCC
Q 010975 392 MFESLLPS 399 (496)
Q Consensus 392 Il~~~l~~ 399 (496)
|+......
T Consensus 1698 Ia~~~yp~ 1705 (4600)
T COG5271 1698 IANKMYPQ 1705 (4600)
T ss_pred HHHhhCCc
Confidence 88887653
No 263
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.91 E-value=8.3e-06 Score=85.06 Aligned_cols=101 Identities=21% Similarity=0.310 Sum_probs=55.4
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhhcc-eeeeeeccccccc-------ccCChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASSVVSK-------WRGDSEKLIKVLFELARHHAPSTIFLDEID 318 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~-~~i~v~~s~l~~~-------~~G~~e~~l~~lf~~a~~~~p~ILfIDEID 318 (496)
.+++|++||||+|+|||+|.-.+.+.+.. .-.++.-.+++.. +.|. ..-+..+.+..... ..+|++||++
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~~~-~~lLcfDEF~ 137 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELAKE-SRLLCFDEFQ 137 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHHhc-CCEEEEeeee
Confidence 46799999999999999999999887743 1111111111111 1111 11122222222222 2499999996
Q ss_pred HHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 319 AIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 319 ~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
.- +.++.+ ++..|+..+- ...+++|+|+|.+
T Consensus 138 V~------DiaDAm----il~rLf~~l~-----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT------DIADAM----ILKRLFEALF-----KRGVVLVATSNRP 168 (362)
T ss_pred cc------chhHHH----HHHHHHHHHH-----HCCCEEEecCCCC
Confidence 42 122333 3333444331 2337789999987
No 264
>PHA00729 NTP-binding motif containing protein
Probab=97.89 E-value=1.8e-05 Score=76.99 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTT 276 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~ 276 (496)
.+++|+|+||||||++|.+++.+++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 479999999999999999999988633
No 265
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.88 E-value=2.7e-05 Score=71.35 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=22.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..+.++|+||+||||++.-++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999877
No 266
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.86 E-value=4.2e-05 Score=91.28 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=44.4
Q ss_pred CCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 276 (496)
Q Consensus 210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~ 276 (496)
.+...+++++|++...+++.+.+.... ...+-+-|+|++|+||||||+++++.+..+
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~~----------~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLES----------EEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHcccc----------CceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 355668899999999999988774321 123568899999999999999998877443
No 267
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.85 E-value=1.4e-05 Score=86.14 Aligned_cols=157 Identities=23% Similarity=0.248 Sum_probs=87.0
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc----ccccccCC
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS----VVSKWRGD 292 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~----l~~~~~G~ 292 (496)
.|+|.+.+|..+.-.+........-....++...+|||+|.||||||-+.|.+++...+.++..--+. +.......
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 58999999999887664433221111122444467999999999999999999998876665442211 11000000
Q ss_pred hHHHHHHHHHHhhh---cCCcceehhhHHHHHhhhcCCcchhHHhhhh-----hhhhhhhccCccccCcEEEEEeccCCc
Q 010975 293 SEKLIKVLFELARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRL-----KTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 293 ~e~~l~~lf~~a~~---~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i-----~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
...+.+.-++.. ...+|-+|||+|++...-. ..-|++..+. +..+...+ ..+..|||++|..
T Consensus 530 --PvtrEWTLEaGALVLADkGvClIDEFDKMndqDR--tSIHEAMEQQSISISKAGIVtsL------qArctvIAAanPi 599 (854)
T KOG0477|consen 530 --PVTREWTLEAGALVLADKGVCLIDEFDKMNDQDR--TSIHEAMEQQSISISKAGIVTSL------QARCTVIAAANPI 599 (854)
T ss_pred --CccceeeeccCeEEEccCceEEeehhhhhccccc--chHHHHHHhcchhhhhhhHHHHH------HhhhhhheecCCC
Confidence 001111111110 1237999999999954321 1223222111 01122222 2335688888873
Q ss_pred ---c----------cccHHHHHHhhhhhcccC
Q 010975 365 ---W----------ELDAAMLRRLEKRILVPL 383 (496)
Q Consensus 365 ---~----------~Ld~aL~rRf~~~I~~~~ 383 (496)
+ .+..++++||+....+..
T Consensus 600 gGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD 631 (854)
T KOG0477|consen 600 GGRYNPSLTFAQNVDLTEPILSRFDILCVVKD 631 (854)
T ss_pred CCccCCccchhhccccccchhhhcceeeeeec
Confidence 2 377899999987555543
No 268
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.80 E-value=2e-05 Score=85.66 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=46.5
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-cceeeeeec
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISA 282 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~~ 282 (496)
|+|++|++++++++.+++...... +....+-++|.||||+|||+||++|++.+ ..+++.+.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~g------l~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQG------LEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHh------cCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 779999999999999988332211 11233568999999999999999999977 345555543
No 269
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.76 E-value=2.1e-05 Score=78.21 Aligned_cols=74 Identities=27% Similarity=0.383 Sum_probs=48.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHh------hhcceeeeeecccccccccC-ChHHHHHHHHHHh--------hhcCCcceeh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT------ECKTTFFNISASSVVSKWRG-DSEKLIKVLFELA--------RHHAPSTIFL 314 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~------~l~~~~i~v~~s~l~~~~~G-~~e~~l~~lf~~a--------~~~~p~ILfI 314 (496)
..+||.||+|.||+.||+.|-. ++..+|++++|..+.+...- ..-+.++..|.-+ +....++||+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 4699999999999999998864 55789999999888754110 0001111112111 1122479999
Q ss_pred hhHHHHHhh
Q 010975 315 DEIDAIISQ 323 (496)
Q Consensus 315 DEID~L~~~ 323 (496)
|||..+..+
T Consensus 289 deigelgad 297 (531)
T COG4650 289 DEIGELGAD 297 (531)
T ss_pred HhhhhcCcc
Confidence 999888544
No 270
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.73 E-value=6.2e-05 Score=72.08 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=52.2
Q ss_pred cccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc-cc----------------------CChHHHH
Q 010975 244 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-WR----------------------GDSEKLI 297 (496)
Q Consensus 244 ~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~-~~----------------------G~~e~~l 297 (496)
.+++...-++++||||+|||+++..++... +.+.++++..++... .. .+....+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 345666779999999999999999998755 567787777542110 00 0011123
Q ss_pred HHHHHHhhhcCCcceehhhHHHHHhh
Q 010975 298 KVLFELARHHAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 298 ~~lf~~a~~~~p~ILfIDEID~L~~~ 323 (496)
..+.+.+....+.+|+||-+..+...
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~ 112 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRL 112 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHH
Confidence 33444444557889999999998643
No 271
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.72 E-value=2.3e-05 Score=68.02 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=27.8
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
++|.||||+||||+|+.+|+.+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988776654
No 272
>PHA02624 large T antigen; Provisional
Probab=97.65 E-value=3.4e-05 Score=84.14 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=32.9
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 284 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~ 284 (496)
++..+.++|+||||||||+++.+|++.++...+.++++.
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 455568999999999999999999999977777787543
No 273
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00027 Score=74.40 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=62.1
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh-------cceeeeeecccccc----------c------ccCChHHHHHHHHHHhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVVS----------K------WRGDSEKLIKVLFELAR 305 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l-------~~~~i~v~~s~l~~----------~------~~G~~e~~l~~lf~~a~ 305 (496)
++.++|+||+|+||||++..+|..+ +..+..+++..... . ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4679999999999999999999865 23444443322110 0 1112223344444443
Q ss_pred hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHh
Q 010975 306 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRL 375 (496)
Q Consensus 306 ~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf 375 (496)
....+|+||.+.....+ . ..+..+...++........++|+.+|.....+. .+..+|
T Consensus 253 -~~~DlVLIDTaGr~~~~-------~----~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~ 309 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPKD-------F----MKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQF 309 (388)
T ss_pred -CCCCEEEEcCCCCCccC-------H----HHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHh
Confidence 23469999998654211 1 112333333333333335677887777766665 344454
No 274
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.0002 Score=74.83 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=62.2
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh----c-ceeeeeecccccc----------cccC------ChHHHHHHHHHHhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASSVVS----------KWRG------DSEKLIKVLFELAR 305 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l----~-~~~i~v~~s~l~~----------~~~G------~~e~~l~~lf~~a~ 305 (496)
.....++|.||+|+||||++..||..+ | ..+..++...... +..| .....+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 444679999999999999999999864 3 2444444333210 0000 1111222223322
Q ss_pred hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhh
Q 010975 306 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE 376 (496)
Q Consensus 306 ~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~ 376 (496)
....+|+||...... . +......+..+.+.......++|+.+|+..+.+... ..+|.
T Consensus 214 -~~~DlVLIDTaG~~~-------~-----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev-i~~f~ 270 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQ-------R-----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV-VQAYR 270 (374)
T ss_pred -cCCCEEEEcCCCCCc-------c-----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH-HHHHH
Confidence 234799999884321 1 111222333343333444567888888887776654 34453
No 275
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.60 E-value=0.00014 Score=64.35 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=41.3
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.|.|++-+++.+...+...+..+.. ..|--+-|+|+||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p-----~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNP-----RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCC-----CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46999999999999888776654321 122345599999999999999999986
No 276
>PRK08118 topology modulation protein; Reviewed
Probab=97.58 E-value=0.00011 Score=68.47 Aligned_cols=32 Identities=28% Similarity=0.552 Sum_probs=29.8
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
.++++||||+||||+|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999888874
No 277
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.58 E-value=0.00011 Score=68.52 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=24.7
Q ss_pred eeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
++++||||||||+++..++.+. |.+++.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999999887755 556665554
No 278
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.57 E-value=0.00013 Score=72.94 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=61.5
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeec-------cc
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA-------SS 284 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~-------s~ 284 (496)
.+.|+.-+++.+...+......+.. ..|-.+=|+|+|||||..+++.||+.+ ..+++..-. ..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p-----~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNP-----RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCC-----CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 4899999999988888766655431 122345589999999999999999987 222221100 11
Q ss_pred ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975 285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 322 (496)
Q Consensus 285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~ 322 (496)
-...|..+....+ ...++..+.+++++||+|+|.+
T Consensus 158 ~ie~Yk~eL~~~v---~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 158 KIEDYKEELKNRV---RGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred HHHHHHHHHHHHH---HHHHHhcCCceEEechhhhcCH
Confidence 1122332333333 3334445558999999999853
No 279
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.57 E-value=8.2e-05 Score=74.07 Aligned_cols=74 Identities=35% Similarity=0.377 Sum_probs=53.4
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh--cceeeeeecccccccccCC
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGD 292 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l--~~~~i~v~~s~l~~~~~G~ 292 (496)
-..++|++++++.---++.+- +.. ....+.+||.||||||||.||-++++++ +.||+.+.++++.+..+..
T Consensus 37 ~~g~vGQ~~AReAagiivdli-k~K------kmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKK 109 (456)
T KOG1942|consen 37 AAGFVGQENAREAAGIIVDLI-KSK------KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKK 109 (456)
T ss_pred ccccccchhhhhhhhHHHHHH-Hhh------hccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhH
Confidence 456899998887643332211 111 1234789999999999999999999999 5789999999988765544
Q ss_pred hHH
Q 010975 293 SEK 295 (496)
Q Consensus 293 ~e~ 295 (496)
++-
T Consensus 110 TEv 112 (456)
T KOG1942|consen 110 TEV 112 (456)
T ss_pred HHH
Confidence 443
No 280
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.56 E-value=2.1e-05 Score=89.69 Aligned_cols=206 Identities=20% Similarity=0.163 Sum_probs=121.9
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCc-cccccc--cCccc-eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYP-KYFTGL--LSPWK-GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~-~~~~~~--~~~~~-~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.+...+.+....++.|.......+.+.+......+ ..+... ..... .++++||||+|||+.+..+|.++|..+++.
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~ 388 (871)
T KOG1968|consen 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEK 388 (871)
T ss_pred ccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeec
Confidence 34455556666778777776667777665442221 112211 11112 379999999999999999999999999999
Q ss_pred ecccccccccC-----C--hHHHHHHHH---HHhh-hcCC-cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc
Q 010975 281 SASSVVSKWRG-----D--SEKLIKVLF---ELAR-HHAP-STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 348 (496)
Q Consensus 281 ~~s~l~~~~~G-----~--~e~~l~~lf---~~a~-~~~p-~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 348 (496)
|.++.++++.. . ....+...+ .... .+.. .||++||+|.+... . +-....+...+.
T Consensus 389 Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~--d--------Rg~v~~l~~l~~-- 456 (871)
T KOG1968|consen 389 NASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE--D--------RGGVSKLSSLCK-- 456 (871)
T ss_pred CccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch--h--------hhhHHHHHHHHH--
Confidence 99988765331 1 111122222 0000 0112 38999999998652 1 111222222222
Q ss_pred cccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcc
Q 010975 349 TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVS 427 (496)
Q Consensus 349 ~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~ 427 (496)
...+-+|+++|...-.......|....+.|+.|+.++...-+..++...... .+..++++.+.+ ++||++..
T Consensus 457 ---ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i 529 (871)
T KOG1968|consen 457 ---KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQII 529 (871)
T ss_pred ---hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHH
Confidence 1113367788887655555556655679999999998887666666544443 233345555544 56777655
Q ss_pred hh
Q 010975 428 KE 429 (496)
Q Consensus 428 ~~ 429 (496)
..
T Consensus 530 ~~ 531 (871)
T KOG1968|consen 530 MQ 531 (871)
T ss_pred HH
Confidence 43
No 281
>PRK07261 topology modulation protein; Provisional
Probab=97.55 E-value=0.00013 Score=68.07 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=30.2
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
.++++|+||+||||+|+.++..++.+++.++.-..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 47899999999999999999999998887765433
No 282
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.54 E-value=0.00019 Score=77.09 Aligned_cols=78 Identities=24% Similarity=0.372 Sum_probs=54.2
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc------cCC--------hHHHHHHHHHHhhhcC
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RGD--------SEKLIKVLFELARHHA 308 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~------~G~--------~e~~l~~lf~~a~~~~ 308 (496)
+.+..-++|+|+||+|||+++..++... +.++++++..+-.... .|. .+..+..+++.....+
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 4455678999999999999999998866 5677777764432211 010 1123445666666678
Q ss_pred CcceehhhHHHHHhh
Q 010975 309 PSTIFLDEIDAIISQ 323 (496)
Q Consensus 309 p~ILfIDEID~L~~~ 323 (496)
|.+|+||++..+...
T Consensus 157 ~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 157 PDLVVIDSIQTMYSP 171 (446)
T ss_pred CCEEEEechhhhccc
Confidence 899999999988653
No 283
>PRK14974 cell division protein FtsY; Provisional
Probab=97.53 E-value=0.00048 Score=71.18 Aligned_cols=34 Identities=24% Similarity=0.141 Sum_probs=26.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
+.-++|+||||+||||++..+|..+ +.++..+++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4679999999999999999888876 445544544
No 284
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.53 E-value=0.00016 Score=70.21 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=31.3
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 283 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s 283 (496)
+++...-++++||||+|||+++..+|.+. +.++++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34555668999999999999999999755 6777777765
No 285
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.52 E-value=0.0001 Score=68.34 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=39.4
Q ss_pred hhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---eeeeecccc
Q 010975 218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSV 285 (496)
Q Consensus 218 liG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~---~i~v~~s~l 285 (496)
++|.++..++|...+. ... ...++.++|+|++|+|||++++.+...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6899999999999885 211 1234789999999999999999999988554 666666544
No 286
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.51 E-value=7.9e-05 Score=68.59 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=29.8
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
++..++|+|+||+|||++|+.+|+.++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3468999999999999999999999998888543
No 287
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.51 E-value=0.00025 Score=74.33 Aligned_cols=78 Identities=24% Similarity=0.341 Sum_probs=52.8
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc------cC--------ChHHHHHHHHHHhhhcC
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RG--------DSEKLIKVLFELARHHA 308 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~------~G--------~~e~~l~~lf~~a~~~~ 308 (496)
+.+..-++|+|+||+|||+++..+|... +.++++++..+-.... .| ..+..+..+++.+...+
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 3445668999999999999999998766 3567777654322110 01 01223455666666778
Q ss_pred CcceehhhHHHHHhh
Q 010975 309 PSTIFLDEIDAIISQ 323 (496)
Q Consensus 309 p~ILfIDEID~L~~~ 323 (496)
|.+|+||++..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 899999999998643
No 288
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.00023 Score=68.83 Aligned_cols=72 Identities=26% Similarity=0.383 Sum_probs=48.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh--------cceeeeeec-ccccccccCC-------------hHHHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA-SSVVSKWRGD-------------SEKLIKVLFELARH 306 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l--------~~~~i~v~~-s~l~~~~~G~-------------~e~~l~~lf~~a~~ 306 (496)
+.+.|+.|||||||||+.|-+|+-+ ...+..++- +++.+-..|. ..-+-..++...+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 3578999999999999999999876 234455543 2333322221 11223346677788
Q ss_pred cCCcceehhhHHHH
Q 010975 307 HAPSTIFLDEIDAI 320 (496)
Q Consensus 307 ~~p~ILfIDEID~L 320 (496)
+.|.|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 99999999999543
No 289
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.39 E-value=0.00051 Score=70.32 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=56.0
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhhccee-eeeecccccc-------cccCChHHHHHHHHHHhhhcCCcceehhhH
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF-FNISASSVVS-------KWRGDSEKLIKVLFELARHHAPSTIFLDEI 317 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~-i~v~~s~l~~-------~~~G~~e~~l~~lf~~a~~~~p~ILfIDEI 317 (496)
..+++|+.|||+-|.|||+|.-..-..+..+- ..+.-..++. ...|+. .-+..+-+.... ...||++||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~-~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELAA-ETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHHh-cCCEEEeeee
Confidence 45779999999999999999999988773321 1111111110 011222 111111111111 2259999999
Q ss_pred HHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 318 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 318 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
+. ++..+.+...++.++|+ ...|.+|+|+|.+
T Consensus 140 ~V------tDI~DAMiL~rL~~~Lf---------~~GV~lvaTSN~~ 171 (367)
T COG1485 140 EV------TDIADAMILGRLLEALF---------ARGVVLVATSNTA 171 (367)
T ss_pred ee------cChHHHHHHHHHHHHHH---------HCCcEEEEeCCCC
Confidence 53 22334444444444443 2247788999976
No 290
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.39 E-value=0.00013 Score=78.28 Aligned_cols=241 Identities=20% Similarity=0.228 Sum_probs=116.9
Q ss_pred CCCCcCCCCCCCCCCCCcccCCchhHHHHHhhcCC-CceecCCccccccc----cccCCCCCCCCCcHHHHHHHHHH-hh
Q 010975 131 ITERPVSDGSSLNSNGHVQNTSDMAVYEQYRTQGS-GSTCLNGVLANVIN----ERLQKPLLPNFDSAETRALAESL-CR 204 (496)
Q Consensus 131 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~ 204 (496)
+++++++=......--..|.......+-.|+..+. ...+.++..+..+- ..+.+...+.+.........+-. .+
T Consensus 210 QLPRSVDvilddDLVD~~KPGDRV~ivG~yr~Lp~k~~g~tsg~FRTvliaNni~~l~ke~~~~~t~~Di~~i~klsk~k 289 (818)
T KOG0479|consen 210 QLPRSVDVILDDDLVDRVKPGDRVNIVGIYRSLPGKSNGNTSGTFRTVLIANNIELLSKEAAPDFTDEDIRNIKKLSKKK 289 (818)
T ss_pred CCCcceeEEecccccccCCCCCeeEEEEEEeeccCccCCcccceeEEEEEeccHHhhcccccccCChhhHHHHHHHHhcC
Confidence 67777654433332233455555555555543332 22222333333321 12233334555555444332211 11
Q ss_pred hhhhCCCCCcc-chhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 205 DIIRGSPDVKW-ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 205 ~~~~~~~~~~l-~dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
++...- ..++ -.|.|.+.+|+.|.-.+.-.. .....++ ++..-+||+.|.|.|.||-|.|.+.+....-+-..-
T Consensus 290 diFdlL-a~SLAPSI~GH~~vKkAillLLlGGv--Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTG 366 (818)
T KOG0479|consen 290 DIFDLL-ARSLAPSIYGHDYVKKAILLLLLGGV--EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTG 366 (818)
T ss_pred CHHHHH-hhccCcccccHHHHHHHHHHHHhccc--eeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccC
Confidence 111110 0112 258999999999987764322 1112222 344457999999999999999999886632221110
Q ss_pred c-c---ccc---ccccCChHHHHHH-HHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc-cC
Q 010975 282 A-S---SVV---SKWRGDSEKLIKV-LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SD 352 (496)
Q Consensus 282 ~-s---~l~---~~~~G~~e~~l~~-lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~ 352 (496)
. + .|. .......++++.. .+-.|. .+|++|||+|++...- ...-|++..+-.-++. -.|+.. -+
T Consensus 367 RGSSGVGLTAAVTtD~eTGERRLEAGAMVLAD---RGVVCIDEFDKMsDiD--RvAIHEVMEQqtVTIa--KAGIHasLN 439 (818)
T KOG0479|consen 367 RGSSGVGLTAAVTTDQETGERRLEAGAMVLAD---RGVVCIDEFDKMSDID--RVAIHEVMEQQTVTIA--KAGIHASLN 439 (818)
T ss_pred CCCCCccceeEEeeccccchhhhhcCceEEcc---CceEEehhcccccchh--HHHHHHHHhcceEEeE--eccchhhhc
Confidence 0 0 000 0011123344322 111122 3799999999985321 1112222111111110 012221 23
Q ss_pred cEEEEEeccCCccc-------------ccHHHHHHhhhhhcc
Q 010975 353 ELVFVLAATNLPWE-------------LDAAMLRRLEKRILV 381 (496)
Q Consensus 353 ~~viVIatTn~p~~-------------Ld~aL~rRf~~~I~~ 381 (496)
.+.-|+|++|..+. |+..|++||+..+.+
T Consensus 440 ARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~ 481 (818)
T KOG0479|consen 440 ARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVV 481 (818)
T ss_pred cceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEE
Confidence 45778999997742 888999999874433
No 291
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.37 E-value=5e-05 Score=58.89 Aligned_cols=33 Identities=39% Similarity=0.734 Sum_probs=30.4
Q ss_pred CCCchhHHHHhhcCCCCccc-hhhhhhhhccccc
Q 010975 459 PIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 491 (496)
Q Consensus 459 ~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g 491 (496)
+||++||+.||++++||++. ++.+|++|++.||
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 59999999999999999996 6999999999998
No 292
>PRK13947 shikimate kinase; Provisional
Probab=97.34 E-value=0.00015 Score=66.94 Aligned_cols=31 Identities=42% Similarity=0.548 Sum_probs=28.8
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
+++|.|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997755
No 293
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.33 E-value=0.00055 Score=66.90 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=49.7
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc--------------c------------------
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------W------------------ 289 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~--------------~------------------ 289 (496)
+++.+..++++|+||+|||+++..++.+. +.++++++..+-... +
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 35566779999999999999999997653 566666654221110 0
Q ss_pred -cCChHHHHHHHHHHhhhcCCcceehhhHHHHH
Q 010975 290 -RGDSEKLIKVLFELARHHAPSTIFLDEIDAII 321 (496)
Q Consensus 290 -~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~ 321 (496)
.......+..+.+.....+|.+++||++..+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 00113334444445555678899999998764
No 294
>PRK03839 putative kinase; Provisional
Probab=97.30 E-value=0.00017 Score=67.51 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=28.2
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.++|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999887765
No 295
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.28 E-value=0.00051 Score=66.23 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=30.4
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 283 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s 283 (496)
++....-++++|+||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 34555669999999999999999999766 5667667553
No 296
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.27 E-value=0.00017 Score=64.31 Aligned_cols=27 Identities=44% Similarity=0.783 Sum_probs=23.7
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
++++||||+||||+|+.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 689999999999999999999984443
No 297
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.25 E-value=0.0003 Score=67.20 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=25.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 283 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s 283 (496)
+..++.||||||||++++.+...+ +.+++.+..+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 457889999999999999988766 4566655543
No 298
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.25 E-value=0.00061 Score=71.34 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=45.5
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcc-----e-eeeeeccc---------------ccccccCChHHHHH---HHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKT-----T-FFNISASS---------------VVSKWRGDSEKLIK---VLFELARH 306 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~-----~-~i~v~~s~---------------l~~~~~G~~e~~l~---~lf~~a~~ 306 (496)
-.+|.||||+|||+|++.|++.... . ++.+.... +.+.+.......++ .+++.|+.
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999997743 2 22221111 12222233333333 33444432
Q ss_pred ----cCCcceehhhHHHHHhhh
Q 010975 307 ----HAPSTIFLDEIDAIISQR 324 (496)
Q Consensus 307 ----~~p~ILfIDEID~L~~~r 324 (496)
....+||||||+++....
T Consensus 251 ~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 251 LVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHcCCCEEEEEEChHHHHHHH
Confidence 245699999999997764
No 299
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.24 E-value=0.00017 Score=68.60 Aligned_cols=122 Identities=14% Similarity=0.103 Sum_probs=53.8
Q ss_pred eeeeCCCCChhHHHHHHH-Hhhh---cceeeeeeccccccccc----CC-hHH------------HHHHHHHHhhhcCCc
Q 010975 252 ILLFGPPGTGKTMLAKAV-ATEC---KTTFFNISASSVVSKWR----GD-SEK------------LIKVLFELARHHAPS 310 (496)
Q Consensus 252 vLL~GPpGtGKT~LAral-A~~l---~~~~i~v~~s~l~~~~~----G~-~e~------------~l~~lf~~a~~~~p~ 310 (496)
.+++|.||+|||+.|-.. .... |++++. +..++.-+.. +. ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999877554 3322 666554 4432221110 00 000 001111111111457
Q ss_pred ceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccC
Q 010975 311 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 383 (496)
Q Consensus 311 ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~ 383 (496)
+|+|||++.+.+.+...... ..... ..+......+ .-|+.+|..+..+|+.+++..+..+.+.-
T Consensus 82 liviDEa~~~~~~r~~~~~~---~~~~~----~~l~~hRh~g--~diiliTQ~~~~id~~ir~lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK---VPEII----EFLAQHRHYG--WDIILITQSPSQIDKFIRDLVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T-------HHH----HGGGGCCCTT---EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred EEEEECChhhcCCCcccccc---chHHH----HHHHHhCcCC--cEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence 99999999988776542110 11222 2222112222 34566899999999999887666555543
No 300
>PRK00625 shikimate kinase; Provisional
Probab=97.24 E-value=0.00022 Score=66.84 Aligned_cols=31 Identities=39% Similarity=0.559 Sum_probs=28.8
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
+++|+|.||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999988775
No 301
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.24 E-value=0.00025 Score=70.83 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=56.8
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeec-cccccc
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVSK 288 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~-s~l~~~ 288 (496)
.+++++.-.....+.+.+.+....+ ...++++.||+|+||||+++++...+. ..++.+.. .++.-.
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~ 170 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP 170 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S
T ss_pred ccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec
Confidence 3466666555555566655544321 236799999999999999999999873 34443321 111110
Q ss_pred ------cc-CChHHHHHHHHHHhhhcCCcceehhhH
Q 010975 289 ------WR-GDSEKLIKVLFELARHHAPSTIFLDEI 317 (496)
Q Consensus 289 ------~~-G~~e~~l~~lf~~a~~~~p~ILfIDEI 317 (496)
.. .........++..+-...|.+|+++|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 171 GPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp CSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred ccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence 00 112234556667777788999999999
No 302
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.23 E-value=0.00039 Score=66.48 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=41.4
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhc----ceeeeeec-ccccc---------cccCChHHHHHHHHHHhhhcCCcceehhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDE 316 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~-s~l~~---------~~~G~~e~~l~~lf~~a~~~~p~ILfIDE 316 (496)
-+++.||+|+||||++++++..+. ..++.+.. .++.. ...|.........+..+-...|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 478999999999999999988774 22232211 11110 01122122344455555666799999999
Q ss_pred H
Q 010975 317 I 317 (496)
Q Consensus 317 I 317 (496)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 303
>PRK06762 hypothetical protein; Provisional
Probab=97.22 E-value=0.00053 Score=63.13 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=29.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
.-++|+|+||+||||+|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4688999999999999999999986556666654443
No 304
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.20 E-value=0.00027 Score=63.84 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.8
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
+++|+|+||+|||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999998887554
No 305
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00025 Score=64.17 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=29.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.++|++|-|||||||++..+|..++.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 58999999999999999999999999888764
No 306
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.16 E-value=0.001 Score=68.20 Aligned_cols=79 Identities=25% Similarity=0.311 Sum_probs=51.6
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----------------cccCChHHHHHHHHHHhh
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------------KWRGDSEKLIKVLFELAR 305 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----------------~~~G~~e~~l~~lf~~a~ 305 (496)
+++..+-++|+||||+|||+|+..++.+. +.+++.++..+..+ ......+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 34555679999999999999988877655 56666666533211 111223334444434445
Q ss_pred hcCCcceehhhHHHHHhh
Q 010975 306 HHAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 306 ~~~p~ILfIDEID~L~~~ 323 (496)
...+.+|+||-+..+.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567889999999998753
No 307
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.16 E-value=0.00086 Score=65.91 Aligned_cols=173 Identities=18% Similarity=0.183 Sum_probs=90.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcc---eeeeeeccccccc---------ccC--------ChHHHHHHHHHHhhh-cCC
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKT---TFFNISASSVVSK---------WRG--------DSEKLIKVLFELARH-HAP 309 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~---~~i~v~~s~l~~~---------~~G--------~~e~~l~~lf~~a~~-~~p 309 (496)
-+.++|+.|+|||++.|++...++. -.+.++...+... ... ..+..-+.+.+..++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4779999999999999977766632 2233433222111 111 111222233333333 445
Q ss_pred cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc-cH---HHHHHhhhhhcccCCC
Q 010975 310 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL-DA---AMLRRLEKRILVPLPD 385 (496)
Q Consensus 310 ~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L-d~---aL~rRf~~~I~~~~P~ 385 (496)
.++++||++.+..+. -+..+. |.+.-++.... -.++.++-..--..+ -+ .+..|+...+.+++.+
T Consensus 133 v~l~vdEah~L~~~~------le~Lrl----l~nl~~~~~~~-l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLNDSA------LEALRL----LTNLEEDSSKL-LSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhChhH------HHHHHH----HHhhcccccCc-eeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 799999999885431 111111 11111111111 123333322111111 11 2233887668889999
Q ss_pred HHHHHHHHHhhCCCCCCCC----CCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975 386 TEARRAMFESLLPSQTGEE----SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 435 (496)
Q Consensus 386 ~eeR~~Il~~~l~~~~~~~----~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~ 435 (496)
.++....+++.++...... +..+..+...+.| .|.-|..++..|...+.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~ 254 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAY 254 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 9988888888887664432 2234445666666 44566666665555443
No 308
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.16 E-value=0.00067 Score=67.92 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=56.7
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeee-cccccc--
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVS-- 287 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~-~s~l~~-- 287 (496)
++++++-.+...+.|.+.+... ...+++.||+|+||||+++++...+. ..++.+. ..++.-
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~~~-------------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~ 124 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLEKP-------------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPG 124 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHhcC-------------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCC
Confidence 4667765666666666655321 13589999999999999999987763 3344442 111110
Q ss_pred ----cccCChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975 288 ----KWRGDSEKLIKVLFELARHHAPSTIFLDEID 318 (496)
Q Consensus 288 ----~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID 318 (496)
.............+..+....|.+|+++|+.
T Consensus 125 ~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 125 INQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred ceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 0111111234455666667889999999993
No 309
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.15 E-value=0.00096 Score=63.91 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=40.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh-----cceee-------------eeecccccccccCC---hHHHHHHHHHHhhhcC
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFF-------------NISASSVVSKWRGD---SEKLIKVLFELARHHA 308 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i-------------~v~~s~l~~~~~G~---~e~~l~~lf~~a~~~~ 308 (496)
+-++|+||+|+||||+.+.++... |.++- .++..+-.....+. ....+..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 568999999999999999998533 43221 11111100000001 1134556666665457
Q ss_pred CcceehhhH
Q 010975 309 PSTIFLDEI 317 (496)
Q Consensus 309 p~ILfIDEI 317 (496)
|.++++||.
T Consensus 106 p~llllDEp 114 (199)
T cd03283 106 PVLFLLDEI 114 (199)
T ss_pred CeEEEEecc
Confidence 899999997
No 310
>PRK13949 shikimate kinase; Provisional
Probab=97.15 E-value=0.00031 Score=65.54 Aligned_cols=32 Identities=41% Similarity=0.599 Sum_probs=29.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
+.++|+|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999999888766
No 311
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.14 E-value=0.00066 Score=72.12 Aligned_cols=173 Identities=21% Similarity=0.259 Sum_probs=90.5
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec----cccccccc
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA----SSVVSKWR 290 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~----s~l~~~~~ 290 (496)
.+.|.+++|+.+...+-...+ +....+ +...-+|||.|.|||.|+-|.+-+-+-.-.-++.--- ..|.....
T Consensus 332 SIfG~~DiKkAiaClLFgGsr--K~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSR--KRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhcCcc--ccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 699999999999987743321 111112 3334579999999999999999887766444432211 11111100
Q ss_pred CChHHHHHHHHHH---hhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc-ccCcEEEEEeccCCcc-
Q 010975 291 GDSEKLIKVLFEL---ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLPW- 365 (496)
Q Consensus 291 G~~e~~l~~lf~~---a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-~~~~~viVIatTn~p~- 365 (496)
.... .+..+-+ .-....+|++|||+|++-.+- ...-|++..+..-.+ .-.|+. .-+.+.-|+|++|.+.
T Consensus 410 RD~~--tReFylEGGAMVLADgGVvCIDEFDKMre~D--RVAIHEAMEQQTISI--AKAGITT~LNSRtSVLAAANpvfG 483 (729)
T KOG0481|consen 410 RDPS--TREFYLEGGAMVLADGGVVCIDEFDKMREDD--RVAIHEAMEQQTISI--AKAGITTTLNSRTSVLAAANPVFG 483 (729)
T ss_pred ecCC--cceEEEecceEEEecCCEEEeehhhccCchh--hhHHHHHHHhhhHHH--hhhcceeeecchhhhhhhcCCccc
Confidence 0000 0000000 000123799999999984321 112222221111000 001111 1123455888888762
Q ss_pred ----------c--ccHHHHHHhhhhhcccCCCHHHHHH-HHHhhC
Q 010975 366 ----------E--LDAAMLRRLEKRILVPLPDTEARRA-MFESLL 397 (496)
Q Consensus 366 ----------~--Ld~aL~rRf~~~I~~~~P~~eeR~~-Il~~~l 397 (496)
. +-+.+++||+.++.+..--.++|-. |.++.+
T Consensus 484 RyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 484 RYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred cccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 1 4478999999987776654444443 444443
No 312
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.14 E-value=0.00055 Score=67.05 Aligned_cols=76 Identities=22% Similarity=0.357 Sum_probs=46.7
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc-----------------------------ccC--
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-----------------------------WRG-- 291 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~-----------------------------~~G-- 291 (496)
+++..-+++.||||||||+++..++... |.+.++++..+-... ..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 4455679999999999999986665544 455555543211100 000
Q ss_pred ChHHHHHHHHHHhhhcCCcceehhhHHHHH
Q 010975 292 DSEKLIKVLFELARHHAPSTIFLDEIDAII 321 (496)
Q Consensus 292 ~~e~~l~~lf~~a~~~~p~ILfIDEID~L~ 321 (496)
.....+..+.......+|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 012334445555555678899999998764
No 313
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.14 E-value=0.0034 Score=67.16 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=28.8
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 283 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s 283 (496)
++..++++|++|+||||++..+|..+ |.++..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 46779999999999999999999877 4555555553
No 314
>PRK14532 adenylate kinase; Provisional
Probab=97.14 E-value=0.00035 Score=65.76 Aligned_cols=34 Identities=29% Similarity=0.570 Sum_probs=27.9
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
+++|.||||+||||+++.+|+.+|..++. .+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is--~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS--TGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe--CcHHH
Confidence 48999999999999999999999876654 44443
No 315
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.13 E-value=0.0013 Score=62.95 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=21.7
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
|+-++|.||+|+||||.+--+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 3568999999999999888888866
No 316
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.13 E-value=0.00088 Score=64.76 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=30.0
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---c------ceeeeeeccc
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---K------TTFFNISASS 284 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~------~~~i~v~~s~ 284 (496)
++....-+.|+||||+|||+++..+|... + ..+++++..+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 34555668999999999999999998754 3 5666666543
No 317
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.13 E-value=0.00041 Score=73.13 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=38.8
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHH
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAII 321 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~ 321 (496)
...++++.||||||||+++.+++... | -.++...++.... ...+... ....+|+|||+..+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-------~~~lg~v--~~~DlLI~DEvgylp 273 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-------TRQIGLV--GRWDVVAFDEVATLK 273 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-------HHHHhhh--ccCCEEEEEcCCCCc
Confidence 34689999999999999999988762 3 2223333322111 1122221 234799999997753
No 318
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.13 E-value=0.00029 Score=65.65 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=30.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.+++|.|++|+||||+.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998776
No 319
>PHA02774 E1; Provisional
Probab=97.12 E-value=0.00056 Score=74.60 Aligned_cols=35 Identities=23% Similarity=0.519 Sum_probs=28.4
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhcceeee-eec
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISA 282 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~-v~~ 282 (496)
..++++|+||||||||++|.+|++.++..++. +|.
T Consensus 433 Kknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 433 KKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 34689999999999999999999998655443 553
No 320
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.12 E-value=0.00036 Score=65.21 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=27.0
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
++++||||+||||+|+.+|+.++.. .++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHH
Confidence 6899999999999999999999854 45555544
No 321
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.12 E-value=0.0011 Score=78.23 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=86.8
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc--cccCC--------hHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--KWRGD--------SEKLIKVLFELARHHAPSTIFLDEIDAI 320 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~--~~~G~--------~e~~l~~lf~~a~~~~p~ILfIDEID~L 320 (496)
.+||.||+.+|||+++..+|++.|..|++++-.+... +|.|. ..-+-..+.+ |-++. --|++||+...
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVe-AlR~G-yWIVLDELNLA 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVE-ALRRG-YWIVLDELNLA 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHH-HHhcC-cEEEeeccccC
Confidence 5999999999999999999999999999998754432 23321 1111112222 22223 37999999654
Q ss_pred HhhhcCCcchhHHhhhhhhhhhhhcc-----------CccccCcEEEEEeccCCcc------cccHHHHHHhhhhhcccC
Q 010975 321 ISQRGEARSEHEASRRLKTELLIQMD-----------GLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRILVPL 383 (496)
Q Consensus 321 ~~~r~~~~~~~~~~~~i~~~Ll~~ld-----------~~~~~~~~viVIatTn~p~------~Ld~aL~rRf~~~I~~~~ 383 (496)
..+ ++++|-..+| .+..+....++.||-|.|. -+..|++.||-. ++|..
T Consensus 968 pTD-------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE-~hFdd 1033 (4600)
T COG5271 968 PTD-------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLE-MHFDD 1033 (4600)
T ss_pred cHH-------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHh-hhccc
Confidence 322 2222322333 2222334566777878773 388899999955 88888
Q ss_pred CCHHHHHHHHHhhCC
Q 010975 384 PDTEARRAMFESLLP 398 (496)
Q Consensus 384 P~~eeR~~Il~~~l~ 398 (496)
-..+|...|++..++
T Consensus 1034 ipedEle~ILh~rc~ 1048 (4600)
T COG5271 1034 IPEDELEEILHGRCE 1048 (4600)
T ss_pred CcHHHHHHHHhccCc
Confidence 888999999887664
No 322
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.11 E-value=0.001 Score=64.76 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=30.0
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 284 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~ 284 (496)
+++...-+.|+||||+|||+++..++... +..+++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 34555668999999999999999998543 25667776544
No 323
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.11 E-value=0.0023 Score=62.88 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=29.4
Q ss_pred cccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 244 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 244 ~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
.++++...+|++||||+|||+++..++.+. |.+.++++.
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 446667789999999999999998876543 556655553
No 324
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.11 E-value=0.0013 Score=65.36 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.6
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKT 275 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~ 275 (496)
+..++|.||+|+|||++++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 346999999999999999999998744
No 325
>PRK04296 thymidine kinase; Provisional
Probab=97.09 E-value=0.0013 Score=62.38 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=24.7
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~ 281 (496)
-.+++||||+|||+++..++.++ +..++.+.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47899999999999999988876 55555553
No 326
>PF14516 AAA_35: AAA-like domain
Probab=97.07 E-value=0.00087 Score=69.26 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=84.5
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC-------------------------------hH
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-------------------------------SE 294 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~-------------------------------~e 294 (496)
+..+.+.||..+|||++...+.+.+ |...+.+++..+....... ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4678999999999999999988766 6777888776543211100 11
Q ss_pred HHHHHHHHHh---hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--cc-CcEEEEEeccCCccccc
Q 010975 295 KLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QS-DELVFVLAATNLPWELD 368 (496)
Q Consensus 295 ~~l~~lf~~a---~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~-~~~viVIatTn~p~~Ld 368 (496)
......|++. ...+|-||+|||+|.+.... .....+...|-...+... .. ..-+++++.+..+....
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~ 183 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIIL 183 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-------chHHHHHHHHHHHHHhcccCcccceEEEEEecCccccccc
Confidence 1122223321 12457899999999996431 111222222222222111 11 12234444443332211
Q ss_pred HHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCc
Q 010975 369 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 419 (496)
Q Consensus 369 ~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s 419 (496)
..-.+ .+...+.++.-+.+|-..+++.+-... . ...++.+-..+.|..
T Consensus 184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--~-~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--S-QEQLEQLMDWTGGHP 233 (331)
T ss_pred CCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--C-HHHHHHHHHHHCCCH
Confidence 10011 234456677779999888888763221 1 112555666666643
No 327
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.06 E-value=0.0015 Score=67.10 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=50.9
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----------------cccCChHHHHHHHHHHhh
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------------KWRGDSEKLIKVLFELAR 305 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----------------~~~G~~e~~l~~lf~~a~ 305 (496)
+++..+-+.++||||+|||+|+-.++.+. +...+.++..+-.. ......+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 34555668999999999999999987654 66677776532111 011123333333333345
Q ss_pred hcCCcceehhhHHHHHh
Q 010975 306 HHAPSTIFLDEIDAIIS 322 (496)
Q Consensus 306 ~~~p~ILfIDEID~L~~ 322 (496)
...+.+|+||-+-.+.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 56788999999999875
No 328
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.06 E-value=0.0017 Score=60.61 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=47.0
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHH--------------------HHHHHHHHhhhcCCc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEK--------------------LIKVLFELARHHAPS 310 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~--------------------~l~~lf~~a~~~~p~ 310 (496)
.+++.|+||+|||++|..++..++.+++++........ ++.+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 47999999999999999999998877777665443221 1112 233333321 12356
Q ss_pred ceehhhHHHHHhhh
Q 010975 311 TIFLDEIDAIISQR 324 (496)
Q Consensus 311 ILfIDEID~L~~~r 324 (496)
+++||-+..+..+.
T Consensus 79 ~VlID~Lt~~~~n~ 92 (170)
T PRK05800 79 CVLVDCLTTWVTNL 92 (170)
T ss_pred EEEehhHHHHHHHH
Confidence 89999999987653
No 329
>PRK06217 hypothetical protein; Validated
Probab=97.06 E-value=0.00044 Score=65.08 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.3
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.|+|.|+||+||||+++.|++.++.+++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999998877665
No 330
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.06 E-value=0.00046 Score=62.36 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=24.9
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
++|+|+||+||||+|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 331
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.05 E-value=0.0017 Score=60.70 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=47.6
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc-c----------------cCChHHHHHHHHHHhhhcCCcceeh
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-W----------------RGDSEKLIKVLFELARHHAPSTIFL 314 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~-~----------------~G~~e~~l~~lf~~a~~~~p~ILfI 314 (496)
+|+.|++|+|||++|..++...+.+.+++....-.+. + ..+....+...+.... .+.+++|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 5899999999999999999887777777755433221 0 0122233334433222 4579999
Q ss_pred hhHHHHHhhhc
Q 010975 315 DEIDAIISQRG 325 (496)
Q Consensus 315 DEID~L~~~r~ 325 (496)
|-+..+..+.-
T Consensus 80 Dclt~~~~n~l 90 (169)
T cd00544 80 DCLTLWVTNLL 90 (169)
T ss_pred EcHhHHHHHhC
Confidence 99999877643
No 332
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.05 E-value=0.00053 Score=69.86 Aligned_cols=68 Identities=26% Similarity=0.371 Sum_probs=45.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeec-cccc-------ccccCChHHHHHHHHHHhhhcCCcceehhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA-SSVV-------SKWRGDSEKLIKVLFELARHHAPSTIFLDE 316 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~-s~l~-------~~~~G~~e~~l~~lf~~a~~~~p~ILfIDE 316 (496)
.++++.||+|+||||+++++...+ +.+++.+.- .++. .-..+........++..+-...|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 689999999999999999999876 233433321 1111 000111111456677777788999999999
Q ss_pred H
Q 010975 317 I 317 (496)
Q Consensus 317 I 317 (496)
+
T Consensus 213 i 213 (299)
T TIGR02782 213 V 213 (299)
T ss_pred c
Confidence 9
No 333
>PRK13948 shikimate kinase; Provisional
Probab=97.05 E-value=0.00053 Score=64.83 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=31.4
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.++..++|.|.+|+||||+++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34578999999999999999999999999998665
No 334
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.04 E-value=0.0028 Score=67.73 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=27.1
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeeccc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 284 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~ 284 (496)
.+.++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4578999999999999988887754 34566665543
No 335
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.04 E-value=0.0024 Score=64.53 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=28.4
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh----c-ceeeeeeccc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASS 284 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l----~-~~~i~v~~s~ 284 (496)
.++.++|.||+|+||||++..+|..+ + ..+..++...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 44678999999999999999998866 3 4555565543
No 336
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.04 E-value=0.0005 Score=68.99 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=43.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc----------ceeeeee-ccccccccc-------CC------hHHHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK----------TTFFNIS-ASSVVSKWR-------GD------SEKLIKVLFELAR 305 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~----------~~~i~v~-~s~l~~~~~-------G~------~e~~l~~lf~~a~ 305 (496)
.+++|.||||+||||+.+.++..+. .++..++ ..++...+. |. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5899999999999999999999873 2333222 122211111 10 0112334556666
Q ss_pred hcCCcceehhhH
Q 010975 306 HHAPSTIFLDEI 317 (496)
Q Consensus 306 ~~~p~ILfIDEI 317 (496)
...|.+|++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 678999999996
No 337
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0046 Score=65.01 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=36.3
Q ss_pred hHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 222 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 222 e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
+.+++.+.+.+...+..+..+ ...++.++|.||+|+||||++..||..+ +..+..+++
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 445555555553333222111 1234679999999999999999999877 344544444
No 338
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.02 E-value=0.00052 Score=64.53 Aligned_cols=29 Identities=38% Similarity=0.659 Sum_probs=25.7
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
|+|+||||+||||+++.||+.+|..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998766543
No 339
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.01 E-value=0.00068 Score=64.01 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=43.5
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeec-cccccc-------------ccCChHHHHHHHHHHhhhcCCcce
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISA-SSVVSK-------------WRGDSEKLIKVLFELARHHAPSTI 312 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~-s~l~~~-------------~~G~~e~~l~~lf~~a~~~~p~IL 312 (496)
...++|.||+|+||||++++++..+. ...+.+.. .++... ..+........++..+....|.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 46799999999999999999998762 12222211 111100 001112334556666667789999
Q ss_pred ehhhH
Q 010975 313 FLDEI 317 (496)
Q Consensus 313 fIDEI 317 (496)
+++|+
T Consensus 105 ~igEi 109 (186)
T cd01130 105 IVGEV 109 (186)
T ss_pred EEEcc
Confidence 99999
No 340
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.01 E-value=0.002 Score=62.33 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6699999999999999999984
No 341
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.00 E-value=0.00048 Score=64.25 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=29.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 283 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s 283 (496)
+-++|.|+||+||||+|+.++..++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4689999999999999999999998777765543
No 342
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.0024 Score=62.69 Aligned_cols=135 Identities=10% Similarity=0.058 Sum_probs=90.7
Q ss_pred ceeeeeCCCC-ChhHHHHHHHHhhhcce---------eeeeecccccccc-cCChHHHHHHHHHHhh----hcCCcceeh
Q 010975 250 KGILLFGPPG-TGKTMLAKAVATECKTT---------FFNISASSVVSKW-RGDSEKLIKVLFELAR----HHAPSTIFL 314 (496)
Q Consensus 250 ~~vLL~GPpG-tGKT~LAralA~~l~~~---------~i~v~~s~l~~~~-~G~~e~~l~~lf~~a~----~~~p~ILfI 314 (496)
+..||.|..+ +||..++.-++..+... ++.+....-..+. ..-.-..+|.+.+.+. .....|++|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII 95 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII 95 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence 5799999998 99999998888876322 2333221100000 0012344555554443 233469999
Q ss_pred hhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHH
Q 010975 315 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 394 (496)
Q Consensus 315 DEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~ 394 (496)
+++|.|.. ...+.||+.+++ ++..+++|..|..+..+.+.+++|+.. +.++.|+...-.++..
T Consensus 96 ~~ae~mt~-------------~AANALLKtLEE---PP~~t~fILit~~~~~LLpTIrSRCq~-i~~~~p~~~~~~e~~~ 158 (263)
T PRK06581 96 YSAELMNL-------------NAANSCLKILED---APKNSYIFLITSRAASIISTIRSRCFK-INVRSSILHAYNELYS 158 (263)
T ss_pred echHHhCH-------------HHHHHHHHhhcC---CCCCeEEEEEeCChhhCchhHhhceEE-EeCCCCCHHHHHHHHH
Confidence 99999843 234778888873 445566777788888999999999966 9999999988888877
Q ss_pred hhCCCCC
Q 010975 395 SLLPSQT 401 (496)
Q Consensus 395 ~~l~~~~ 401 (496)
..+....
T Consensus 159 ~~~~p~~ 165 (263)
T PRK06581 159 QFIQPIA 165 (263)
T ss_pred Hhccccc
Confidence 7765543
No 343
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.99 E-value=0.00055 Score=62.81 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=24.6
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
++|.||||+||||+++.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866653
No 344
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.99 E-value=0.00054 Score=61.17 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=27.7
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
+.+.|+||+|||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 579999999999999999999999988776
No 345
>PRK14530 adenylate kinase; Provisional
Probab=96.99 E-value=0.00062 Score=65.73 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=27.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..++|.||||+||||+++.||+.++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4689999999999999999999998776644
No 346
>PRK14531 adenylate kinase; Provisional
Probab=96.97 E-value=0.00064 Score=64.00 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=26.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
+.++++||||+||||+++.+|+.+|.+.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 469999999999999999999999876554
No 347
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.96 E-value=0.0027 Score=65.64 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=46.9
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
.+.+.+...+.+...+...- -.-|.++.|+|..|||||.+++.+.+.++.+.+.+++-+.
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~---------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNS---------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred CccchHHHHHHHHHHhCCCC---------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 46677888888888763311 1234678999999999999999999999999998887543
No 348
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.96 E-value=0.0024 Score=61.94 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=50.1
Q ss_pred cccCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecccccc-----------------------------cc-
Q 010975 244 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS-----------------------------KW- 289 (496)
Q Consensus 244 ~~~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~-----------------------------~~- 289 (496)
.+++++..+|+.||||+|||+++..++.+. |.+.+.++..+-.. ..
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 345666779999999999999999877543 56666665321110 00
Q ss_pred ---cCChHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975 290 ---RGDSEKLIKVLFELARHHAPSTIFLDEIDAI 320 (496)
Q Consensus 290 ---~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L 320 (496)
.......+..+.+..+..++.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1123444555556666677799999999998
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.96 E-value=0.0043 Score=62.39 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=27.7
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 283 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s 283 (496)
+++-++|+||+|+||||++..+|..+ |..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34678889999999999999998877 5555555543
No 350
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.96 E-value=0.0021 Score=61.42 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=20.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
.-++|+||.|+||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4699999999999999999993
No 351
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.95 E-value=0.00097 Score=57.54 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=20.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
++++++||+|+|||+++-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888887766
No 352
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.00094 Score=62.91 Aligned_cols=34 Identities=35% Similarity=0.715 Sum_probs=27.3
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
.++|.||||+||||+|+.|++. .++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4899999999999999999999 455566654443
No 353
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.91 E-value=0.0013 Score=69.68 Aligned_cols=120 Identities=20% Similarity=0.165 Sum_probs=68.4
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 330 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~ 330 (496)
-++|+||.+|||||+++.+........+.++..+....... ..... ..+..+.......+|||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~-l~d~~-~~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIE-LLDLL-RAYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhh-HHHHH-HHHHHhhccCCceEEEecccCchh--------
Confidence 78999999999999999999888665666665555433221 11112 222222222346999999977621
Q ss_pred hHHhhhhhhhhhhhccCccccCcEEEEEeccCCc---ccccHHHHHHhhhhhcccCCCHHHHHH
Q 010975 331 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRA 391 (496)
Q Consensus 331 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~~I~~~~P~~eeR~~ 391 (496)
+...+-...|.... .+++. +++.. ..+.+.+..|. ..+.+.+.+..|...
T Consensus 109 ------W~~~lk~l~d~~~~---~v~it-gsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 ------WERALKYLYDRGNL---DVLIT-GSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ------HHHHHHHHHccccc---eEEEE-CCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 22222222331111 34443 44433 23445566685 447777888888865
No 354
>PRK13695 putative NTPase; Provisional
Probab=96.90 E-value=0.0018 Score=60.27 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.6
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l 273 (496)
.++|+|++|+||||+++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988765
No 355
>PRK13946 shikimate kinase; Provisional
Probab=96.90 E-value=0.00072 Score=63.73 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=29.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
+.|+|.|+||+|||++++.+|+.+|.+++..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 67999999999999999999999999998766
No 356
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.88 E-value=0.00084 Score=62.70 Aligned_cols=33 Identities=27% Similarity=0.667 Sum_probs=29.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
..++|.||+|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 579999999999999999999999988877654
No 357
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.88 E-value=0.0012 Score=68.60 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=43.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeec-cccc---------ccccCChHHHHHHHHHHhhhcCCcceehh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFLD 315 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~-s~l~---------~~~~G~~e~~l~~lf~~a~~~~p~ILfID 315 (496)
..+++.||+|+||||+++++...+. ..++.+.- .++. ....|.........++.+-...|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4689999999999999999998764 23333311 1111 11122212234455666667889999999
Q ss_pred hH
Q 010975 316 EI 317 (496)
Q Consensus 316 EI 317 (496)
|+
T Consensus 203 Ei 204 (343)
T TIGR01420 203 EM 204 (343)
T ss_pred CC
Confidence 99
No 358
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.87 E-value=0.00084 Score=62.11 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=28.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
..++|+|+||+|||++++.+|+.+|.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999988654
No 359
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0064 Score=63.64 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=41.3
Q ss_pred chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
.+.+.+.+.+.+...+..+..+. ..+++.++|.||+|+||||++..+|..+ +.++..+++
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIta 242 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT 242 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 46677777777765544433222 2345678999999999999999999866 445555554
No 360
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.87 E-value=0.002 Score=69.34 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=51.7
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc------cCC--------hHHHHHHHHHHhhhcC
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RGD--------SEKLIKVLFELARHHA 308 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~------~G~--------~e~~l~~lf~~a~~~~ 308 (496)
+.+..-++|.|+||+|||+++..++... +.++++++..+-.... .|. .+..+..+...+...+
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 4455679999999999999999998766 3567777654322110 010 0122345555666678
Q ss_pred CcceehhhHHHHHh
Q 010975 309 PSTIFLDEIDAIIS 322 (496)
Q Consensus 309 p~ILfIDEID~L~~ 322 (496)
|.+++||.|..+..
T Consensus 171 ~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 171 PQACVIDSIQTLYS 184 (454)
T ss_pred CcEEEEecchhhcc
Confidence 89999999998854
No 361
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.85 E-value=0.0059 Score=60.77 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=28.4
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeec
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 282 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~ 282 (496)
+.+..-++|.||||+|||+++..++... +.+++.++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4455678999999999999999887764 556665554
No 362
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.84 E-value=0.001 Score=65.26 Aligned_cols=31 Identities=32% Similarity=0.598 Sum_probs=27.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..++|.||||+||||+|+.+|+.++.+++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 3599999999999999999999998766654
No 363
>PRK13764 ATPase; Provisional
Probab=96.81 E-value=0.002 Score=71.32 Aligned_cols=68 Identities=22% Similarity=0.369 Sum_probs=40.8
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc---ceeeeee-cccc-----cccccCChHHHHHHHHHHhhhcCCcceehhhH
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSV-----VSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 317 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~-~s~l-----~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEI 317 (496)
..++|++||||+||||++++++..+. ..+..+. ..++ ...+.. ...........+-...|.++++||+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEi 333 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEM 333 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCC
Confidence 36899999999999999999998874 2232221 1111 112210 0011122223334567999999998
No 364
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.00088 Score=61.57 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.8
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
+-+.|||||||||+++.+|..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999875
No 365
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.80 E-value=0.002 Score=66.68 Aligned_cols=69 Identities=26% Similarity=0.367 Sum_probs=46.7
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc--ceeeeee-cccccc------------c-ccCChHHHHHHHHHHhhhcCCcce
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVS------------K-WRGDSEKLIKVLFELARHHAPSTI 312 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~-~s~l~~------------~-~~G~~e~~l~~lf~~a~~~~p~IL 312 (496)
..+++++|++|+||||+++++...+. .+++.+. ..++.- . ..|...-....+++.+....|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 36899999999999999999999873 2333331 111110 0 012222245667788888999999
Q ss_pred ehhhH
Q 010975 313 FLDEI 317 (496)
Q Consensus 313 fIDEI 317 (496)
++.|+
T Consensus 240 ivGEi 244 (332)
T PRK13900 240 IVGEL 244 (332)
T ss_pred EEEec
Confidence 99999
No 366
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.79 E-value=0.0011 Score=68.03 Aligned_cols=68 Identities=22% Similarity=0.337 Sum_probs=45.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh-----cceeeeee-ccccccc------ccCChHHHHHHHHHHhhhcCCcceehhhH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVSK------WRGDSEKLIKVLFELARHHAPSTIFLDEI 317 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~-~s~l~~~------~~G~~e~~l~~lf~~a~~~~p~ILfIDEI 317 (496)
.++++.|++|+||||++++++... +.+++.+. ..++.-. ......-....++..+-...|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 689999999999999999999876 23344332 1122110 11111223556777777889999999999
No 367
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.0036 Score=59.85 Aligned_cols=24 Identities=50% Similarity=0.719 Sum_probs=22.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
-++|+|+||+|||++|+.+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999994
No 368
>PRK06547 hypothetical protein; Provisional
Probab=96.79 E-value=0.0011 Score=62.14 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.0
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
+.-|++.|++|+|||++++.+++.++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 356888999999999999999999887766543
No 369
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.78 E-value=0.0049 Score=71.60 Aligned_cols=52 Identities=23% Similarity=0.142 Sum_probs=35.9
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
-.+++-.....+.|.+.. ..+-++++||+|.||||++...+...+ ++..++.
T Consensus 13 ~~~~~~R~rl~~~l~~~~---------------~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 13 LHNTVVRERLLAKLSGAN---------------NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred ccccCcchHHHHHHhccc---------------CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 345666666666554422 124589999999999999999988776 6555544
No 370
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77 E-value=0.0075 Score=63.96 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=26.3
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 283 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s 283 (496)
+.-++|.||+|+||||++..+|... |..+..+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 3458899999999999999999755 3445555443
No 371
>PRK14528 adenylate kinase; Provisional
Probab=96.77 E-value=0.0011 Score=62.74 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=26.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
+.+++.||||+||||+++.+++.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999998776543
No 372
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.75 E-value=0.0011 Score=61.93 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=25.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
.-+++.||||+||||+++.+++.+|...+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 35889999999999999999999876544
No 373
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.75 E-value=0.00087 Score=58.15 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.9
Q ss_pred eeeeCCCCChhHHHHHHHHhhh
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l 273 (496)
|+|.|+|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 374
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.75 E-value=0.0025 Score=59.94 Aligned_cols=72 Identities=21% Similarity=0.170 Sum_probs=41.6
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeecccc--ccccc-CChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSV--VSKWR-GDSEKLIKVLFELARHHAPSTIFLDEID 318 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~s~l--~~~~~-G~~e~~l~~lf~~a~~~~p~ILfIDEID 318 (496)
.+..-+.|.||.|+|||||++.++..... --+.++...+ ..... =....+-+-.+..+-...|.++++||--
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 34456889999999999999999986511 1122222111 11110 0111222334445555678999999984
No 375
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.73 E-value=0.0049 Score=58.17 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=18.6
Q ss_pred eeeeCCCCChhHHHHHHHHh
Q 010975 252 ILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~ 271 (496)
++|+||.|+|||++.|.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999994
No 376
>PF13245 AAA_19: Part of AAA domain
Probab=96.72 E-value=0.0018 Score=52.28 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=17.5
Q ss_pred eeeeeCCCCChhH-HHHHHHHhhh
Q 010975 251 GILLFGPPGTGKT-MLAKAVATEC 273 (496)
Q Consensus 251 ~vLL~GPpGtGKT-~LAralA~~l 273 (496)
-+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566999999999 6666666655
No 377
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.72 E-value=0.0014 Score=68.76 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=43.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc-----ceeeeeecc-ccc-----------ccccCChHHHHHHHHHHhhhcCCcce
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK-----TTFFNISAS-SVV-----------SKWRGDSEKLIKVLFELARHHAPSTI 312 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~-----~~~i~v~~s-~l~-----------~~~~G~~e~~l~~lf~~a~~~~p~IL 312 (496)
..+|++||+|+||||+++++.+.+. .+++.+.-. ++. ...+|.........+..+-...|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4589999999999999999988762 344444211 111 01112111234455566667789999
Q ss_pred ehhhH
Q 010975 313 FLDEI 317 (496)
Q Consensus 313 fIDEI 317 (496)
+++|+
T Consensus 230 ~vGEi 234 (372)
T TIGR02525 230 GVGEI 234 (372)
T ss_pred eeCCC
Confidence 99999
No 378
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.001 Score=61.80 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.9
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.++++|.|||||||+++.++ .+|...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8998887765
No 379
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.71 E-value=0.0029 Score=65.32 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=44.0
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-cceeeee
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNI 280 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v 280 (496)
+++.|++++++++.+++...-+.. ....+-++|.||+|+|||++++.+-+-+ ..+++.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~------~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGL------EERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhcc------CccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 379999999999999885543211 2223568899999999999999999877 3344444
No 380
>PRK02496 adk adenylate kinase; Provisional
Probab=96.70 E-value=0.0012 Score=62.06 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=26.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.+++.||||+||||+++.++..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998765543
No 381
>PRK04328 hypothetical protein; Provisional
Probab=96.70 E-value=0.0071 Score=59.92 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=27.2
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 281 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~ 281 (496)
++++...+|++||||+|||+++..++.+. |.+.++++
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 35566779999999999999998876542 44554444
No 382
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.70 E-value=0.0023 Score=63.23 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=27.4
Q ss_pred eeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 285 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l 285 (496)
|+|+|+||+||||+|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999988 455666655434
No 383
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.68 E-value=0.0016 Score=66.89 Aligned_cols=69 Identities=23% Similarity=0.445 Sum_probs=45.3
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh-----cceeeeee-cccccc------cccCChHHHHHHHHHHhhhcCCcceehhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVS------KWRGDSEKLIKVLFELARHHAPSTIFLDE 316 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~-~s~l~~------~~~G~~e~~l~~lf~~a~~~~p~ILfIDE 316 (496)
..++++.|++|+||||++++++... ..+++.+. ..++.- .+..........++..+-...|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3689999999999999999999864 22333221 112210 11111122356677777889999999999
Q ss_pred H
Q 010975 317 I 317 (496)
Q Consensus 317 I 317 (496)
+
T Consensus 228 i 228 (319)
T PRK13894 228 V 228 (319)
T ss_pred c
Confidence 9
No 384
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.67 E-value=0.0012 Score=63.40 Aligned_cols=33 Identities=30% Similarity=0.634 Sum_probs=27.0
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
+++.||||+||||+|+.+|+.+|...+. .+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7899999999999999999998866554 44443
No 385
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.67 E-value=0.01 Score=60.97 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=27.3
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
.+.-++|.||+|+||||++..+|..+ +..+.-+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34568899999999999999999877 445554444
No 386
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.67 E-value=0.0032 Score=61.99 Aligned_cols=133 Identities=12% Similarity=0.215 Sum_probs=72.6
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhhccee---eeeeccccccc---c-----cC------ChHHHHH-------HHHH
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATECKTTF---FNISASSVVSK---W-----RG------DSEKLIK-------VLFE 302 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~---i~v~~s~l~~~---~-----~G------~~e~~l~-------~lf~ 302 (496)
..+-.+++.|++|||||+++..+...+...+ +.+.. ..... + +. +.+..+. +...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 3445799999999999999999988774322 22221 11111 1 00 0111111 1111
Q ss_pred Hhhh---cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhh
Q 010975 303 LARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 379 (496)
Q Consensus 303 ~a~~---~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I 379 (496)
.... ..+.+|++|++.. . . .-......++. ..+.-++.+|..+.....+++.++.-.+.++
T Consensus 90 k~~~~k~~~~~LiIlDD~~~---~----~----~k~~~l~~~~~-----~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i 153 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD---K----K----LKSKILRQFFN-----NGRHYNISIIFLSQSYFHLPPNIRSNIDYFI 153 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC---c----h----hhhHHHHHHHh-----cccccceEEEEEeeecccCCHHHhhcceEEE
Confidence 1111 2256889999732 0 0 01122233332 1233346677778888889999988777766
Q ss_pred cccCCCHHHHHHHHHhhC
Q 010975 380 LVPLPDTEARRAMFESLL 397 (496)
Q Consensus 380 ~~~~P~~eeR~~Il~~~l 397 (496)
.+. .+..+...|++.+.
T Consensus 154 ~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNMN 170 (241)
T ss_pred Eec-CcHHHHHHHHHhcc
Confidence 665 46677776766654
No 387
>PLN02674 adenylate kinase
Probab=96.67 E-value=0.0017 Score=64.20 Aligned_cols=36 Identities=25% Similarity=0.553 Sum_probs=29.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
..++|.||||+||+|+++.+|+.++. ..++.+++..
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~--~his~GdllR 67 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDMLR 67 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHHH
Confidence 56999999999999999999999985 4555555543
No 388
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.66 E-value=0.0017 Score=66.42 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=31.7
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
..+...++|+|+||+|||++++.+|..+|.+++.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 455678999999999999999999999999999544
No 389
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.65 E-value=0.0042 Score=57.54 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=26.2
Q ss_pred eeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 283 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s 283 (496)
+++.||||+|||++++.++..+ +.++..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6889999999999999999876 5566666654
No 390
>PLN02200 adenylate kinase family protein
Probab=96.64 E-value=0.0017 Score=63.80 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=30.1
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
+.-+++.||||+||||+++.+|+.+|.. .++.+++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 3568999999999999999999999864 466666653
No 391
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.64 E-value=0.0044 Score=65.20 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.4
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
++..++|.||||+|||++++.+++.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 345699999999999999999999763
No 392
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.64 E-value=0.0015 Score=63.13 Aligned_cols=34 Identities=29% Similarity=0.595 Sum_probs=27.7
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
.|+++||||+||||+++.+|..++...+. .+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence 38999999999999999999999865554 44443
No 393
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.64 E-value=0.0059 Score=58.28 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.6
Q ss_pred ceeeeeCCCCChhHHHHHHHH
Q 010975 250 KGILLFGPPGTGKTMLAKAVA 270 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA 270 (496)
+.++|+||.|+||||+.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 459999999999999999998
No 394
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.63 E-value=0.0028 Score=67.94 Aligned_cols=89 Identities=25% Similarity=0.234 Sum_probs=54.0
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCccce-eeeeCCCCChhHHHHHHHHhhhcceeeeee-cccccc---
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG-ILLFGPPGTGKTMLAKAVATECKTTFFNIS-ASSVVS--- 287 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~-vLL~GPpGtGKT~LAralA~~l~~~~i~v~-~s~l~~--- 287 (496)
.++++++......+.+.+.+.. +.| +|++||+|+||||...++.++++.+...+- ..+-..
T Consensus 235 l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~ 300 (500)
T COG2804 235 LDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQL 300 (500)
T ss_pred CCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeec
Confidence 3455555555566666655533 355 778899999999999999999865543221 111110
Q ss_pred c---------ccC-ChHHHHHHHHHHhhhcCCcceehhhHHH
Q 010975 288 K---------WRG-DSEKLIKVLFELARHHAPSTIFLDEIDA 319 (496)
Q Consensus 288 ~---------~~G-~~e~~l~~lf~~a~~~~p~ILfIDEID~ 319 (496)
. -.| .++. .++..-...|.||++.||-.
T Consensus 301 ~gI~Q~qVN~k~gltfa~----~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 301 PGINQVQVNPKIGLTFAR----ALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred CCcceeecccccCCCHHH----HHHHHhccCCCeEEEeccCC
Confidence 1 011 1233 33444457899999999943
No 395
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.63 E-value=0.0027 Score=68.96 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=58.1
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccccCccce-eeeeCCCCChhHHHHHHHHhhhc---ceeeeeec-ccc
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG-ILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSV 285 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~-vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~-s~l 285 (496)
...+++++.-.++..+.+.+.+..+ .| ++++||+|+||||+..++.++++ ..++.+.- -+.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~~--------------~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRRP--------------HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhcC--------------CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 3456778776777777777766332 44 78999999999999998888774 33443321 111
Q ss_pred cccccC------ChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975 286 VSKWRG------DSEKLIKVLFELARHHAPSTIFLDEID 318 (496)
Q Consensus 286 ~~~~~G------~~e~~l~~lf~~a~~~~p~ILfIDEID 318 (496)
.-...+ .........+..+-...|.||++.|+-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 100011 111123344555566889999999983
No 396
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.62 E-value=0.0018 Score=75.99 Aligned_cols=145 Identities=18% Similarity=0.193 Sum_probs=80.3
Q ss_pred CccceeeeeCCCCChhHHH-HHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhc--------------CCcc
Q 010975 247 SPWKGILLFGPPGTGKTML-AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH--------------APST 311 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~L-AralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~--------------~p~I 311 (496)
...++++++||||+|||++ .-++-+++-..++.+|-+.-.. ++..+..+-+....+ +-.|
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 4457999999999999985 5667777777788777654321 222332222211111 1139
Q ss_pred eehhhHHHHHhhhcC-CcchhHHhhhhhhh--hhhhccCccccCcEEEEEeccCCccc-----ccHHHHHHhhhhhcccC
Q 010975 312 IFLDEIDAIISQRGE-ARSEHEASRRLKTE--LLIQMDGLTQSDELVFVLAATNLPWE-----LDAAMLRRLEKRILVPL 383 (496)
Q Consensus 312 LfIDEID~L~~~r~~-~~~~~~~~~~i~~~--Ll~~ld~~~~~~~~viVIatTn~p~~-----Ld~aL~rRf~~~I~~~~ 383 (496)
||.|||+ |...+.- .+..--..+.+... +...+..-...-.++++.+++|.+.+ ....+.||- ..+.+.+
T Consensus 1567 LFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf~~y 1644 (3164)
T COG5245 1567 LFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFVFCCY 1644 (3164)
T ss_pred EEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEEEecC
Confidence 9999998 4322211 11100011111111 11111111122346888999998854 334444443 5578889
Q ss_pred CCHHHHHHHHHhhCC
Q 010975 384 PDTEARRAMFESLLP 398 (496)
Q Consensus 384 P~~eeR~~Il~~~l~ 398 (496)
|.......|.+.++.
T Consensus 1645 pe~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1645 PELASLRNIYEAVLM 1659 (3164)
T ss_pred cchhhHHHHHHHHHH
Confidence 999888888887664
No 397
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.62 E-value=0.0054 Score=61.15 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=29.0
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
++++...++++||||+|||+++..++.+. |.+.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45666779999999999999999887643 556655554
No 398
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.61 E-value=0.0025 Score=65.18 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=45.3
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhc--ceeeeee-ccccccc------------ccCChHHHHHHHHHHhhhcCCcce
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVSK------------WRGDSEKLIKVLFELARHHAPSTI 312 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~-~s~l~~~------------~~G~~e~~l~~lf~~a~~~~p~IL 312 (496)
...++++.||+|+||||++++++..+. ...+.+. ..++.-. ..+...-....++..+....|.+|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 346899999999999999999998773 2222221 1111100 001112234556677777889999
Q ss_pred ehhhHH
Q 010975 313 FLDEID 318 (496)
Q Consensus 313 fIDEID 318 (496)
++||+-
T Consensus 223 i~gE~r 228 (308)
T TIGR02788 223 ILGELR 228 (308)
T ss_pred EEeccC
Confidence 999993
No 399
>PRK14527 adenylate kinase; Provisional
Probab=96.60 E-value=0.0015 Score=61.86 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=26.3
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
+.-+++.||||+||||+|+.+++.++...+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3569999999999999999999998765443
No 400
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.60 E-value=0.0023 Score=50.49 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.5
Q ss_pred eeeeCCCCChhHHHHHHHHhhh
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 401
>PRK09354 recA recombinase A; Provisional
Probab=96.60 E-value=0.006 Score=63.28 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=50.2
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----------------ccCChHHHHHHHHHHhh
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 305 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----------------~~G~~e~~l~~lf~~a~ 305 (496)
+++..+-++|+||||||||+|+-.++.+. |...++++..+-... -....+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 35555678999999999999999887654 666676665331110 11122333333333344
Q ss_pred hcCCcceehhhHHHHHh
Q 010975 306 HHAPSTIFLDEIDAIIS 322 (496)
Q Consensus 306 ~~~p~ILfIDEID~L~~ 322 (496)
...+.+|+||-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56788999999998875
No 402
>PRK04040 adenylate kinase; Provisional
Probab=96.60 E-value=0.0018 Score=61.44 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh--cceee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC--KTTFF 278 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l--~~~~i 278 (496)
.-++++|+||+||||+++.+++.+ +..++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 568999999999999999999999 55543
No 403
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.59 E-value=0.0029 Score=58.39 Aligned_cols=73 Identities=19% Similarity=0.126 Sum_probs=43.2
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeeccccc--------cc---ccC--ChHHHHHHHHHHhhhcCCc
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVV--------SK---WRG--DSEKLIKVLFELARHHAPS 310 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~l~--------~~---~~G--~~e~~l~~lf~~a~~~~p~ 310 (496)
+.+...+.|.||+|+|||||.+.++.... .--+.++...+. .. |.. ....+-+-.+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 34556799999999999999999998761 111222221111 00 110 0112223345555567789
Q ss_pred ceehhhHH
Q 010975 311 TIFLDEID 318 (496)
Q Consensus 311 ILfIDEID 318 (496)
+|++||-.
T Consensus 103 illlDEP~ 110 (163)
T cd03216 103 LLILDEPT 110 (163)
T ss_pred EEEEECCC
Confidence 99999984
No 404
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.53 E-value=0.002 Score=67.84 Aligned_cols=44 Identities=34% Similarity=0.499 Sum_probs=37.1
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+++|..-.++++++|.+-- .|+|+.||||.||||+|+++|.-+
T Consensus 244 ~~ledY~L~dkl~eRL~era-----------------eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 244 LSLEDYGLSDKLKERLEERA-----------------EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred echhhcCCCHHHHHHHHhhh-----------------cceEEecCCCCChhHHHHHHHHHH
Confidence 45667777788888888743 699999999999999999999976
No 405
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.53 E-value=0.016 Score=60.34 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.1
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
-.+|+|+.|||.-|||||+|.-..-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3568999999999999999998887655
No 406
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.53 E-value=0.0019 Score=59.34 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=21.1
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
|.|+|+||||||||++.|++. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 87766
No 407
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.52 E-value=0.0017 Score=58.99 Aligned_cols=32 Identities=34% Similarity=0.623 Sum_probs=25.5
Q ss_pred eeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 254 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 254 L~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
|.||||+||||+++.||+.+|.. .++.+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHH
Confidence 58999999999999999998764 555555543
No 408
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.51 E-value=0.0026 Score=60.74 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=17.1
Q ss_pred eeeeCCCCChhHHHHHHHHhhh
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l 273 (496)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999997666666655
No 409
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.51 E-value=0.0057 Score=55.30 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=42.3
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeecc---cccccccCChHHHHHHHHHHhhhcCCcceehhhHHH
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS---SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 319 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~s---~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~ 319 (496)
+.+...+.|.||+|+|||||++.++..... --+.++.. .+...+.+ ...-+-.+..+-..+|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~--G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG--GEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 345567899999999999999999997621 11111111 00011111 12222234455556788999999843
No 410
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.50 E-value=0.0058 Score=58.25 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=31.7
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh-cceeeeeeccccccc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSK 288 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~~s~l~~~ 288 (496)
.|.-+++.|+||+|||++++.+...+ +..++.++..++...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 44678999999999999999999988 788888888777654
No 411
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.49 E-value=0.005 Score=70.09 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=41.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---c--ceeeeeeccccc----ccccCChHHHHHHHHHHhh----------hcCCc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---K--TTFFNISASSVV----SKWRGDSEKLIKVLFELAR----------HHAPS 310 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~--~~~i~v~~s~l~----~~~~G~~e~~l~~lf~~a~----------~~~p~ 310 (496)
+-++|.|+||||||++++++...+ + .+++-+..+.-. .+..|.....+++++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468999999999999999997766 3 344433322111 1112222233444443211 12346
Q ss_pred ceehhhHHHH
Q 010975 311 TIFLDEIDAI 320 (496)
Q Consensus 311 ILfIDEID~L 320 (496)
+|+|||+..+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999554
No 412
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.48 E-value=0.0021 Score=64.67 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=47.6
Q ss_pred ccce-eeeeCCCCChhHHHHHHHHhhhcce----eeeee---------cccccc-cccCChHHHHHHHHHHhhhcCCcce
Q 010975 248 PWKG-ILLFGPPGTGKTMLAKAVATECKTT----FFNIS---------ASSVVS-KWRGDSEKLIKVLFELARHHAPSTI 312 (496)
Q Consensus 248 ~~~~-vLL~GPpGtGKT~LAralA~~l~~~----~i~v~---------~s~l~~-~~~G~~e~~l~~lf~~a~~~~p~IL 312 (496)
.++| ||++||+|+||||...++-..+|.+ ++.+. -..+.. ..+|.-.......++.|-...|.||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 3456 7888999999999999999888543 33331 112211 2334444445556667777889999
Q ss_pred ehhhHHH
Q 010975 313 FLDEIDA 319 (496)
Q Consensus 313 fIDEID~ 319 (496)
++-|+-.
T Consensus 203 lvGEmRD 209 (353)
T COG2805 203 LVGEMRD 209 (353)
T ss_pred EEecccc
Confidence 9988843
No 413
>PRK04182 cytidylate kinase; Provisional
Probab=96.46 E-value=0.0022 Score=59.33 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=26.5
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
.++|.|+||+|||++++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999988765
No 414
>PRK01184 hypothetical protein; Provisional
Probab=96.44 E-value=0.0022 Score=60.13 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.6
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
-++|+||||+||||+++ +++++|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999998 788888777654
No 415
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.43 E-value=0.0027 Score=66.07 Aligned_cols=23 Identities=52% Similarity=0.638 Sum_probs=21.5
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l 273 (496)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 416
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.0025 Score=62.54 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=22.5
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.--+.|.||+|||||||.+.+|.-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458999999999999999999855
No 417
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.42 E-value=0.0062 Score=66.25 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=54.5
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc--------------c--------------cCCh
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------W--------------RGDS 293 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~--------------~--------------~G~~ 293 (496)
++.+...+|+.||||+|||+++-.++.+. |-+.++++..+-... + ....
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 45666779999999999999999998866 555666654222111 0 0112
Q ss_pred HHHHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975 294 EKLIKVLFELARHHAPSTIFLDEIDAIIS 322 (496)
Q Consensus 294 e~~l~~lf~~a~~~~p~ILfIDEID~L~~ 322 (496)
+..+..+.+.+...+|.+++||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 45666777777777889999999988754
No 418
>PF13479 AAA_24: AAA domain
Probab=96.40 E-value=0.0067 Score=58.63 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=38.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc-------ccccCChHHHHHHHHHHh--hhcCCcceehhhHHHH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-------SKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAI 320 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~-------~~~~G~~e~~l~~lf~~a--~~~~p~ILfIDEID~L 320 (496)
-.++|||+||+|||++|..+-+-+ ++.+..+... ..+.-.+-..+...+..+ ......+|+||-++.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 469999999999999999982211 2233222110 001111233344444433 2334579999988776
No 419
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.39 E-value=0.012 Score=56.99 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=29.2
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
++++...+++.|+||+|||+++..++... +.+.++++.
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34556679999999999999999887643 666666654
No 420
>PRK10436 hypothetical protein; Provisional
Probab=96.39 E-value=0.0036 Score=67.51 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=57.9
Q ss_pred CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeec-ccccc
Q 010975 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVS 287 (496)
Q Consensus 212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~-s~l~~ 287 (496)
..++++++-.+...+.+.+.+..+ ..-+|++||+|+||||+..++..+++ .+++.+-- -+..-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~~-------------~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQP-------------QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHhc-------------CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 446788877777777777766432 23488999999999999988777763 33333321 11110
Q ss_pred c-----ccC-ChHHHHHHHHHHhhhcCCcceehhhH
Q 010975 288 K-----WRG-DSEKLIKVLFELARHHAPSTIFLDEI 317 (496)
Q Consensus 288 ~-----~~G-~~e~~l~~lf~~a~~~~p~ILfIDEI 317 (496)
. .++ .........+..+-...|.||++.||
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEI 296 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEI 296 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCC
Confidence 0 011 11122444555666688999999998
No 421
>PRK08233 hypothetical protein; Provisional
Probab=96.39 E-value=0.0029 Score=58.75 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=25.0
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhc-ceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECK-TTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~-~~~i~v~ 281 (496)
-|.+.|+||+||||+|+.|+..++ .+++..+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 477889999999999999999985 4444443
No 422
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.38 E-value=0.0066 Score=57.07 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.7
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~ 271 (496)
+.+..-+.|.||+|+|||||.+.++.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 34445689999999999999999964
No 423
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0063 Score=63.65 Aligned_cols=98 Identities=23% Similarity=0.348 Sum_probs=65.7
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh--cceeeeeecccccccc------cC--------ChHHHHHHHHHHhhhcCC
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKW------RG--------DSEKLIKVLFELARHHAP 309 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l--~~~~i~v~~s~l~~~~------~G--------~~e~~l~~lf~~a~~~~p 309 (496)
+-+..-+||-|.||.|||||.-.++..+ ..++.++++.+-.... .| -.+..+..+.+.+...+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 3444568899999999999998888877 3378888875533221 11 245567778888888999
Q ss_pred cceehhhHHHHHhhh-cCCcchhHHhhhhhhhhhh
Q 010975 310 STIFLDEIDAIISQR-GEARSEHEASRRLKTELLI 343 (496)
Q Consensus 310 ~ILfIDEID~L~~~r-~~~~~~~~~~~~i~~~Ll~ 343 (496)
.+++||-|..+.... ++.++.-...+....+|..
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 999999999987653 2333333333444444443
No 424
>PRK06696 uridine kinase; Validated
Probab=96.36 E-value=0.0031 Score=61.29 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=30.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 286 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~ 286 (496)
.-|.+.|++|+||||+|+.|+..+ |.+++.++..++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 458899999999999999999999 5677776665553
No 425
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.36 E-value=0.0033 Score=57.91 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=32.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 288 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~ 288 (496)
.-++|+|.||+||||+|+++.+.+ +.+++.+++..+...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 458899999999999999999988 788999988776643
No 426
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.35 E-value=0.0017 Score=65.75 Aligned_cols=36 Identities=22% Similarity=0.495 Sum_probs=31.0
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
+++.||+|+|||++|..+|++++..++.++.-.+..
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~ 37 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYK 37 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheee
Confidence 689999999999999999999999888887655543
No 427
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.35 E-value=0.0064 Score=58.28 Aligned_cols=111 Identities=20% Similarity=0.224 Sum_probs=56.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~ 329 (496)
..++|.|+-|+|||++.+.|+.+ ++.-+..... ....... .... -|+.+||++.+...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~------~kd~~~~----l~~~--~iveldEl~~~~k~------ 110 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFD------DKDFLEQ----LQGK--WIVELDELDGLSKK------ 110 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHH----hccCccccCC------CcHHHHH----HHHh--HheeHHHHhhcchh------
Confidence 46889999999999999999665 2211111110 0111111 1111 48999999987522
Q ss_pred hhHHhhhhhhhhhhhcc-----CccccCcEEEEEeccCCcccc-cHHHHHHhhhhhcccC
Q 010975 330 EHEASRRLKTELLIQMD-----GLTQSDELVFVLAATNLPWEL-DAAMLRRLEKRILVPL 383 (496)
Q Consensus 330 ~~~~~~~i~~~Ll~~ld-----~~~~~~~~viVIatTn~p~~L-d~aL~rRf~~~I~~~~ 383 (496)
+.+..+.+++.--..+. .....+...++|+|||..+-| |+.=-|||-. +.+..
T Consensus 111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~-v~v~~ 169 (198)
T PF05272_consen 111 DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWP-VEVSK 169 (198)
T ss_pred hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEE-EEEcC
Confidence 11112222211111111 111234456789999988643 3334468733 44433
No 428
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.35 E-value=0.0028 Score=58.19 Aligned_cols=29 Identities=38% Similarity=0.652 Sum_probs=26.2
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
|.++|++|+|||++|+.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887654
No 429
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.35 E-value=0.0025 Score=57.19 Aligned_cols=29 Identities=28% Similarity=0.254 Sum_probs=25.4
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKTT 276 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~ 276 (496)
+..-++|.|+.|+|||++++.+++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34568999999999999999999999754
No 430
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.34 E-value=0.0031 Score=65.45 Aligned_cols=70 Identities=24% Similarity=0.395 Sum_probs=45.5
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeec-ccccc--------cc----cCChHHHHHHHHHHhhhcCCcce
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISA-SSVVS--------KW----RGDSEKLIKVLFELARHHAPSTI 312 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~-s~l~~--------~~----~G~~e~~l~~lf~~a~~~~p~IL 312 (496)
...++++.||+|+||||++++++..+.. +++.+.- .++.- .+ .+...-....++..+....|..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 3468999999999999999999998732 3332211 11110 00 11112234567777777899999
Q ss_pred ehhhH
Q 010975 313 FLDEI 317 (496)
Q Consensus 313 fIDEI 317 (496)
++.|+
T Consensus 241 ivGEi 245 (344)
T PRK13851 241 LLGEM 245 (344)
T ss_pred EEEee
Confidence 99999
No 431
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.33 E-value=0.011 Score=54.14 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=18.6
Q ss_pred ceeeeeCCCCChhHH-HHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTM-LAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~-LAralA~~l 273 (496)
+++++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 478999999999999 555555544
No 432
>PRK14529 adenylate kinase; Provisional
Probab=96.32 E-value=0.0046 Score=60.35 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=28.7
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 288 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~ 288 (496)
.++|.||||+||||+++.|++.++.+.+ +.+++...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr~ 37 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFRE 37 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhhh
Confidence 4789999999999999999999986654 44555443
No 433
>PLN02840 tRNA dimethylallyltransferase
Probab=96.32 E-value=0.0017 Score=68.77 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=31.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
.-++|.||+|+|||+++..||..++.+++..+...+.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvY 58 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVY 58 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEecccccee
Confidence 3588999999999999999999999888877764443
No 434
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.31 E-value=0.0032 Score=63.67 Aligned_cols=30 Identities=40% Similarity=0.536 Sum_probs=24.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh-cceeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC-KTTFFN 279 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l-~~~~i~ 279 (496)
.-+++.|+||+||||+|+.+++.+ +..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 458899999999999999999998 544443
No 435
>PLN02165 adenylate isopentenyltransferase
Probab=96.31 E-value=0.0019 Score=66.46 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=29.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 283 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s 283 (496)
..++|.||+|+|||+|+..||..++..++..+.-
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 4689999999999999999999998877766543
No 436
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.31 E-value=0.0045 Score=58.68 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
++-++|.||+|+|||+|++.+.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4568999999999999999998876
No 437
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.30 E-value=0.0033 Score=57.25 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=26.4
Q ss_pred eeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 283 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s 283 (496)
++++|+||+|||++|+.++..+ +...+.++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d 36 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGD 36 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 6899999999999999999988 5555666543
No 438
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.29 E-value=0.0096 Score=58.10 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=28.7
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeec
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 282 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~ 282 (496)
+.+..-++|.|+||+|||+++..++... +.+++.++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 4455679999999999999999887755 667666653
No 439
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.28 E-value=0.015 Score=53.76 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.5
Q ss_pred eeeeCCCCChhHHHHHHHHhhh
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+|+++|.|||++|-++|-+.
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6788999999999999998766
No 440
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.28 E-value=0.0037 Score=58.87 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=25.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
..++|.||+|+||||+++.++...+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 46889999999999999999998876544
No 441
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.27 E-value=0.004 Score=57.97 Aligned_cols=27 Identities=37% Similarity=0.377 Sum_probs=24.1
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
++.-++|.|+||+||||+++.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999999885
No 442
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.26 E-value=0.0085 Score=61.49 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=30.4
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 284 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~ 284 (496)
+++...-++|+||||+|||+++..++... +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 35555668999999999999999998653 34677776544
No 443
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.26 E-value=0.0076 Score=56.56 Aligned_cols=26 Identities=42% Similarity=0.575 Sum_probs=22.1
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
...-++|+||||+|||+++..++..+
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34458999999999999999988866
No 444
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.25 E-value=0.0022 Score=65.54 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=30.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
+-+++.||+|+|||++|..+|++++..++..+.-.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 468999999999999999999999988777765433
No 445
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.23 E-value=0.0089 Score=61.33 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=29.4
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 284 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~ 284 (496)
++....-+.|+||||+|||+++..++-.. +..+++++..+
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 35555668899999999999999877422 45677776543
No 446
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.23 E-value=0.0047 Score=68.42 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=57.9
Q ss_pred CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc---eeeeeecc-cc--
Q 010975 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---TFFNISAS-SV-- 285 (496)
Q Consensus 212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~---~~i~v~~s-~l-- 285 (496)
..+++++.-.+...+.+.+.+..+ ...+|++||+|+||||+..++.+.++. +++.+--. +.
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~~-------------~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHKP-------------QGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHhc-------------CCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 345777777777777777766432 134789999999999999888887742 33332111 11
Q ss_pred ---ccccc-CChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975 286 ---VSKWR-GDSEKLIKVLFELARHHAPSTIFLDEID 318 (496)
Q Consensus 286 ---~~~~~-G~~e~~l~~lf~~a~~~~p~ILfIDEID 318 (496)
....+ ..........+..+-...|.||++.|+-
T Consensus 359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 00000 1111224455666667889999999993
No 447
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.0089 Score=66.41 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.6
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
++|+..+-|.||+|.||||+|..+-+-.
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5677789999999999999999998855
No 448
>PRK14526 adenylate kinase; Provisional
Probab=96.22 E-value=0.0038 Score=60.45 Aligned_cols=34 Identities=32% Similarity=0.639 Sum_probs=27.3
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
.++|.||||+||||+++.+|..++.+. ++.+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence 478999999999999999999987655 4444443
No 449
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.22 E-value=0.005 Score=63.52 Aligned_cols=34 Identities=29% Similarity=0.278 Sum_probs=29.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 283 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s 283 (496)
+.++|.|+||+|||||++.++..++.+++.-.+.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R 196 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAR 196 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhH
Confidence 4689999999999999999999998887654443
No 450
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.21 E-value=0.0036 Score=58.43 Aligned_cols=23 Identities=52% Similarity=0.804 Sum_probs=20.6
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l 273 (496)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 451
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.20 E-value=0.01 Score=61.63 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=28.5
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecc
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS 283 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s 283 (496)
++....-..|+||||||||+++..++-.. +..+++++..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 34555568899999999999999887422 3466777653
No 452
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.20 E-value=0.011 Score=60.26 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=30.4
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 284 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~ 284 (496)
+++...-++++||||+|||+++-.+|... +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 34555668999999999999999998653 33677777654
No 453
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.20 E-value=0.0047 Score=62.01 Aligned_cols=70 Identities=27% Similarity=0.302 Sum_probs=37.7
Q ss_pred eeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc---ccc-cCChHHHHHHHH----HHhhhcCCcceehhhHHHH
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV---SKW-RGDSEKLIKVLF----ELARHHAPSTIFLDEIDAI 320 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~---~~~-~G~~e~~l~~lf----~~a~~~~p~ILfIDEID~L 320 (496)
++|+|-||+|||++|+.|+..+ +..++.++...+. ..| ....++..+..+ ..+-.. ..|+++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCchH
Confidence 7899999999999999999976 4566666644333 112 123355555433 332222 369999988776
Q ss_pred Hh
Q 010975 321 IS 322 (496)
Q Consensus 321 ~~ 322 (496)
-+
T Consensus 83 Kg 84 (270)
T PF08433_consen 83 KG 84 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 454
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.03 Score=61.04 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=22.9
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.....+.|+||+|+||||++..|+..+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 344678999999999999999998765
No 455
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.15 E-value=0.031 Score=51.74 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=68.3
Q ss_pred eCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHh
Q 010975 255 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS 334 (496)
Q Consensus 255 ~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~ 334 (496)
.+.+||||||++.+|++-++- +-.+.-.++.++ ...+.++.+++........++|.|==......|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR---------- 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRER---------- 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHH----------
Confidence 578999999999999999873 333333344333 244555566666643444688888443333222
Q ss_pred hhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHH--------Hhhhh--hcccCCCHHHHHHHHHhhCCCCC
Q 010975 335 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--------RLEKR--ILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 335 ~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~r--------Rf~~~--I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
+++.+.+-.....+......+-+||-.-..+.-.+.+.+ |=+.+ |.....+...-..|++.++....
T Consensus 71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 122222222111111122235555554333322223333 22222 33333456677778888876554
No 456
>PRK10867 signal recognition particle protein; Provisional
Probab=96.14 E-value=0.018 Score=61.68 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=43.2
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeeccccccc----------------c---c-CChHHHHHHHHHH
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------W---R-GDSEKLIKVLFEL 303 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~~----------------~---~-G~~e~~l~~lf~~ 303 (496)
++.-++++||+|+||||++..+|..+ |..+..+++...... + . ..........+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45678999999999999888887755 455666665422211 0 0 1223333445555
Q ss_pred hhhcCCcceehhhH
Q 010975 304 ARHHAPSTIFLDEI 317 (496)
Q Consensus 304 a~~~~p~ILfIDEI 317 (496)
++.....+++||=.
T Consensus 179 a~~~~~DvVIIDTa 192 (433)
T PRK10867 179 AKENGYDVVIVDTA 192 (433)
T ss_pred HHhcCCCEEEEeCC
Confidence 55555678888855
No 457
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.13 E-value=0.0058 Score=56.80 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=27.6
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 283 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s 283 (496)
+.-++|.|+||+||||+++.++..+ +..+..++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 3568999999999999999999988 3345555543
No 458
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.13 E-value=0.044 Score=58.47 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=28.2
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
++.-++|+|++|+||||++..+|..+ |..+.-+++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 34678999999999999999999877 556666655
No 459
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.13 E-value=0.013 Score=56.48 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
+-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999974
No 460
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.012 Score=53.65 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=23.9
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+...+.|.||+|+|||+++++++..+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445679999999999999999999976
No 461
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.12 E-value=0.043 Score=58.70 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=28.2
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 283 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s 283 (496)
++.-+++.|++|+||||++..+|..+ |.++..+++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 35679999999999999988888764 4566666664
No 462
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.08 E-value=0.016 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+..+++||.|+|||++.++++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999986544
No 463
>PLN02199 shikimate kinase
Probab=96.08 E-value=0.0048 Score=62.43 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=29.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
++|+|.|.+|+|||++++.+|+.+|.+|+..+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 68999999999999999999999999998765
No 464
>PLN02748 tRNA dimethylallyltransferase
Probab=96.06 E-value=0.0027 Score=68.33 Aligned_cols=37 Identities=30% Similarity=0.516 Sum_probs=31.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
.-++|.||+|+|||+||..+|..++..++..+...+.
T Consensus 23 ~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVY 59 (468)
T PLN02748 23 KVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVY 59 (468)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheee
Confidence 3589999999999999999999999888877754443
No 465
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.05 E-value=0.009 Score=59.96 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=51.7
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHH
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 296 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~ 296 (496)
+++=-+++.+.+..+..... .+..|+||.|.+|+||+++++..|...+..++.+..+.-.+ ..+....
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~----------~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLS----------QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHC----------STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHc----------CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 34555555655555432211 23468999999999999999999999999999887643211 2234556
Q ss_pred HHHHHHHhhh-cCCcceeh
Q 010975 297 IKVLFELARH-HAPSTIFL 314 (496)
Q Consensus 297 l~~lf~~a~~-~~p~ILfI 314 (496)
++.++.+|.. .+|.++++
T Consensus 77 Lk~~~~~ag~~~~~~vfll 95 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLL 95 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEE
T ss_pred HHHHHHHHhccCCCeEEEe
Confidence 7777666653 44555554
No 466
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.03 E-value=0.024 Score=55.57 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.9
Q ss_pred eeeeCCCCChhHHHHHHHHhh
Q 010975 252 ILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~ 272 (496)
-+|.||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999864
No 467
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=0.003 Score=64.22 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=34.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 288 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~ 288 (496)
+-++|+||+++|||.+|-.+|+++|.+++.++...+...
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~ 42 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRG 42 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCC
Confidence 568999999999999999999999999999987665443
No 468
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.00 E-value=0.0053 Score=62.59 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=40.1
Q ss_pred chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.++.++.+.+++...+... ....+-++|+|+.|+|||++.+.+...+|.....+.
T Consensus 54 d~~~~~~l~~~lg~~L~~~------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~ 108 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAV 108 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCC
Confidence 4457888888876655432 123357999999999999999999998886654433
No 469
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.00 E-value=0.0074 Score=63.96 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=26.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
+.|+|.|++|||||||+++||..+|...+
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 57999999999999999999999887654
No 470
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.99 E-value=0.011 Score=61.69 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=22.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
...+|+||||||||++++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999977
No 471
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.99 E-value=0.0081 Score=57.87 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=29.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 288 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~ 288 (496)
-++|+||+|||||.+|-++|+.+|.+++..+.-....+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 46899999999999999999999999999987665544
No 472
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.98 E-value=0.0071 Score=60.09 Aligned_cols=41 Identities=32% Similarity=0.415 Sum_probs=33.0
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 285 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l 285 (496)
+++..+.+|++|+||||||+++..++.+. |.+++.++..+.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 35566789999999999999999998866 677888876543
No 473
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.97 E-value=0.0065 Score=58.16 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=25.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTF 277 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~ 277 (496)
.-+++.|+||+||||+|+.+|.+++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4689999999999999999999988754
No 474
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.97 E-value=0.0048 Score=57.46 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.8
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
-++|.||||+||||++++|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999874
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.96 E-value=0.018 Score=62.70 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=29.4
Q ss_pred cccCccceeeeeCCCCChhHHHHHHHHhh----hcceeeeeec
Q 010975 244 GLLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISA 282 (496)
Q Consensus 244 ~~~~~~~~vLL~GPpGtGKT~LAralA~~----l~~~~i~v~~ 282 (496)
.++++.+.+|+.||||||||++|..++.+ .|.+.++++.
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 34566788999999999999999998553 2456665554
No 476
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.94 E-value=0.022 Score=55.50 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.8
Q ss_pred cceeeeeCCCCChhHHHHHHHHh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~ 271 (496)
...++|.||.|+|||++.+.++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999988
No 477
>PTZ00035 Rad51 protein; Provisional
Probab=95.91 E-value=0.018 Score=59.71 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=28.3
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecc
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS 283 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s 283 (496)
++....-+.|+||||+|||+++..++... +..+++++..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE 161 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTE 161 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEcc
Confidence 34555668899999999999999987532 3455666654
No 478
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.89 E-value=0.033 Score=60.32 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.1
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.-++|.||+|+||||++..||..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 3568899999999999999999866
No 479
>PRK04132 replication factor C small subunit; Provisional
Probab=95.89 E-value=0.0047 Score=70.81 Aligned_cols=49 Identities=27% Similarity=0.397 Sum_probs=41.1
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHH
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 265 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~L 265 (496)
.+.+++++.+|+|++|++.+++.|+..+... ...|++|+||||+||+..
T Consensus 8 ~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~------------~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 8 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred cHHHhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCCcccc
Confidence 5778889999999999999999999988642 224688999999999743
No 480
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.87 E-value=0.01 Score=55.11 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=24.3
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+...+.|.||+|+|||||.+.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455679999999999999999999976
No 481
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.035 Score=63.03 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=21.9
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.-++|.||+|+||||++..||..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4568999999999999999999766
No 482
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.85 E-value=0.015 Score=59.68 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=29.0
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 284 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~ 284 (496)
++.+..-+.++||||+|||+++..++... +...++++..+
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 34555668899999999999999987522 13556666544
No 483
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.0087 Score=55.94 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=33.0
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 286 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~ 286 (496)
+..+.|+|.+|+||||+|.++.+.+ |...+.+++..+.
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 3468899999999999999999988 8889999886654
No 484
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.046 Score=58.24 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.3
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+.-+.|.||+|+||||++..||..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44569999999999999999998754
No 485
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.83 E-value=0.0075 Score=68.94 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=41.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----cccCChHHHHHHHHHH-hh----hcCCcceehhhH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRGDSEKLIKVLFEL-AR----HHAPSTIFLDEI 317 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----~~~G~~e~~l~~lf~~-a~----~~~p~ILfIDEI 317 (496)
+-++|.|+||||||++++++...+ |..++-+..+.... ...|.....+..+... .. .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 457899999999999999997655 55666554433221 1112222223333211 11 123469999999
Q ss_pred HHH
Q 010975 318 DAI 320 (496)
Q Consensus 318 D~L 320 (496)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 544
No 486
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.79 E-value=0.01 Score=56.85 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=26.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc-ceeeeeecc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK-TTFFNISAS 283 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~-~~~i~v~~s 283 (496)
.-|.|.|++|+|||||++.|+..++ ..+..++..
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 4688999999999999999999983 334444443
No 487
>PRK12338 hypothetical protein; Provisional
Probab=95.78 E-value=0.0083 Score=61.48 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=26.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
|.-+++.|+||+||||+|+.+|..+|...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 356899999999999999999999987654
No 488
>PLN02459 probable adenylate kinase
Probab=95.76 E-value=0.0084 Score=59.77 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=27.4
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
.++|.||||+||||+++.+|+.++... ++.+++.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdll 64 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDLV 64 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHHH
Confidence 488899999999999999999987544 4445543
No 489
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.74 E-value=0.026 Score=54.35 Aligned_cols=118 Identities=23% Similarity=0.315 Sum_probs=69.6
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec----------------------------------cccccc
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA----------------------------------SSVVSK 288 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~----------------------------------s~l~~~ 288 (496)
++.+.=+++.|+.|||||.|.+.++.-+ +....+++. ..+. .
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~-~ 103 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVN-W 103 (235)
T ss_pred CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccc-c
Confidence 4444558899999999999999998744 333333221 1000 0
Q ss_pred ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975 289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 368 (496)
Q Consensus 289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld 368 (496)
..+...+.+..+++..+.....|++||-+..+.... + ......++..+..+...+. +++ -|-+|..++
T Consensus 104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----~----~~~vl~fm~~~r~l~d~gK-vIi--lTvhp~~l~ 171 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----S----EDAVLNFMTFLRKLSDLGK-VII--LTVHPSALD 171 (235)
T ss_pred ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----c----HHHHHHHHHHHHHHHhCCC-EEE--EEeChhhcC
Confidence 112344556666766676777899999998876441 1 1112233344433333443 433 356677889
Q ss_pred HHHHHHhh
Q 010975 369 AAMLRRLE 376 (496)
Q Consensus 369 ~aL~rRf~ 376 (496)
+++.-|+.
T Consensus 172 e~~~~rir 179 (235)
T COG2874 172 EDVLTRIR 179 (235)
T ss_pred HHHHHHHH
Confidence 88887764
No 490
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.014 Score=54.99 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=21.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.-++|.||+|+||||+++++-...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 458899999999999999998877
No 491
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.015 Score=62.68 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=43.3
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh--------cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD 315 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l--------~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfID 315 (496)
.+||--+-+.||||||||||++++.+.+ ..|+..+++..-.-.+. +....+.++++.|+-..-.+|+||
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTfl-Ecp~Dl~~miDvaKIaDLVlLlId 142 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFL-ECPSDLHQMIDVAKIADLVLLLID 142 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEE-eChHHHHHHHhHHHhhheeEEEec
Confidence 3455556689999999999999998876 23333333321111111 344667777777776555577777
No 492
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.71 E-value=0.03 Score=61.25 Aligned_cols=113 Identities=23% Similarity=0.216 Sum_probs=0.0
Q ss_pred cccccccCccceeeeeCCCCChhHHHHHHHHhhhcce------------------------------------eeeeecc
Q 010975 240 KYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------------------FFNISAS 283 (496)
Q Consensus 240 ~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------------------~i~v~~s 283 (496)
+....++++...+||+|+||+|||+++..++.+.-.. ++.++..
T Consensus 22 ~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~ 101 (509)
T PRK09302 22 DITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDAS 101 (509)
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecC
Q ss_pred cccccccC----ChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEe
Q 010975 284 SVVSKWRG----DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 359 (496)
Q Consensus 284 ~l~~~~~G----~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 359 (496)
.....+.. ..+..+..+.+.+...++..++||-+..+....... ..+...+...+..+...+-.++++.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~-------~~~r~~l~~L~~~Lk~~g~TvLlt~ 174 (509)
T PRK09302 102 PDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNE-------AVVRRELRRLFAWLKQKGVTAVITG 174 (509)
T ss_pred cccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCH-------HHHHHHHHHHHHHHHhCCCEEEEEE
No 493
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.69 E-value=0.025 Score=63.15 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+-.+|.|+|||||||+++.+...+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 458999999999999998887655
No 494
>PRK13975 thymidylate kinase; Provisional
Probab=95.69 E-value=0.0084 Score=56.56 Aligned_cols=28 Identities=36% Similarity=0.411 Sum_probs=24.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTF 277 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~ 277 (496)
.-++|.|++|+||||+++.+++.++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3588999999999999999999998543
No 495
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.68 E-value=0.022 Score=59.16 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=28.4
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccc
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 284 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~ 284 (496)
+.+..-+.++|+||+|||+++..+|... +.++++++..+
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 4555568899999999999999887432 23577776544
No 496
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.68 E-value=0.0095 Score=56.00 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=27.6
Q ss_pred eeeeCCCCChhHHHHHHHHhhhc---ceeeeeeccccc
Q 010975 252 ILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVV 286 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l~ 286 (496)
|.+.|+||+||||+|+.++..++ .++..++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 57899999999999999999873 455666555543
No 497
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.67 E-value=0.009 Score=56.73 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=24.3
Q ss_pred eeeeCCCCChhHHHHHHHHhhh-cceeeeee
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 281 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l-~~~~i~v~ 281 (496)
|.+.|+||+||||+|+.++..+ +..++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 5688999999999999999998 45454443
No 498
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.67 E-value=0.041 Score=65.16 Aligned_cols=75 Identities=15% Similarity=0.325 Sum_probs=48.4
Q ss_pred cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc--cccHHHHHHhhhhhcccCCCHH
Q 010975 310 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 387 (496)
Q Consensus 310 ~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~--~Ld~aL~rRf~~~I~~~~P~~e 387 (496)
-||+|||+..|..... +.+ ..++..|-. ..+.-.|.+|.+|.+|. .+...++.-|..+|.+..-+..
T Consensus 1142 IVVIIDE~AdLm~~~~---------kev-E~lI~rLAq-kGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~ 1210 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG---------KKV-EELIARLAQ-KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 1210 (1355)
T ss_pred EEEEEcChHHHHhhhh---------HHH-HHHHHHHHH-HhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHH
Confidence 3899999988864311 111 122222211 12334467778888885 5777788889888999999888
Q ss_pred HHHHHHHh
Q 010975 388 ARRAMFES 395 (496)
Q Consensus 388 eR~~Il~~ 395 (496)
+-+.||-.
T Consensus 1211 DSrtILd~ 1218 (1355)
T PRK10263 1211 DSRTILDQ 1218 (1355)
T ss_pred HHHHhcCC
Confidence 88877754
No 499
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.65 E-value=0.0048 Score=59.68 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=20.1
Q ss_pred eeeeCCCCChhHHHHHHHHhhh
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l 273 (496)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999985
No 500
>PRK10536 hypothetical protein; Provisional
Probab=95.63 E-value=0.032 Score=55.48 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=43.7
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh-h-c--ceeeeeec-----ccc
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-C-K--TTFFNISA-----SSV 285 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~-l-~--~~~i~v~~-----s~l 285 (496)
+..+.+.......+...+.. ..-+++.||+|||||+||.+++.+ + + ...+.+.- .+.
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~ 119 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADED 119 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhh
Confidence 33455555555555554421 136899999999999999999985 3 2 23333332 333
Q ss_pred cccccCChHHHHHHHH
Q 010975 286 VSKWRGDSEKLIKVLF 301 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf 301 (496)
.+-..|..++++.-++
T Consensus 120 LGfLPG~~~eK~~p~~ 135 (262)
T PRK10536 120 LGFLPGDIAEKFAPYF 135 (262)
T ss_pred hCcCCCCHHHHHHHHH
Confidence 4445666666555443
Done!