Query 010975
Match_columns 496
No_of_seqs 379 out of 3315
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:11:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3E-46 1E-50 388.2 6.6 256 204-478 136-395 (405)
2 3cf2_A TER ATPase, transitiona 100.0 7.3E-45 2.5E-49 406.9 7.9 288 205-493 466-765 (806)
3 4b4t_H 26S protease regulatory 100.0 1.1E-44 3.7E-49 380.9 8.6 262 207-487 200-467 (467)
4 4b4t_M 26S protease regulatory 100.0 1.7E-44 5.8E-49 379.7 9.2 258 206-482 171-432 (434)
5 4b4t_I 26S protease regulatory 100.0 1.5E-44 5.3E-49 376.5 3.7 253 207-478 173-429 (437)
6 4b4t_L 26S protease subunit RP 100.0 6.2E-44 2.1E-48 375.6 3.9 254 205-477 170-427 (437)
7 4b4t_K 26S protease regulatory 100.0 5.8E-43 2E-47 367.7 10.0 253 207-478 163-421 (428)
8 1xwi_A SKD1 protein; VPS4B, AA 100.0 6.3E-42 2.2E-46 348.7 11.2 285 208-494 4-322 (322)
9 3eie_A Vacuolar protein sortin 100.0 1.1E-41 3.9E-46 346.3 10.5 289 204-494 6-321 (322)
10 2qp9_X Vacuolar protein sortin 100.0 8.7E-41 3E-45 344.7 9.3 296 197-494 32-354 (355)
11 2zan_A Vacuolar protein sortin 100.0 7.5E-40 2.6E-44 347.4 8.3 293 199-494 117-444 (444)
12 3cf2_A TER ATPase, transitiona 100.0 7.7E-40 2.6E-44 366.3 5.2 280 209-492 197-482 (806)
13 3cf0_A Transitional endoplasmi 100.0 8E-39 2.7E-43 322.5 7.5 286 204-490 3-300 (301)
14 3b9p_A CG5977-PA, isoform A; A 100.0 1.8E-37 6.1E-42 310.2 9.4 289 198-494 3-295 (297)
15 3d8b_A Fidgetin-like protein 1 100.0 2.8E-37 9.7E-42 318.5 10.3 288 198-493 66-356 (357)
16 3vfd_A Spastin; ATPase, microt 100.0 3.4E-36 1.2E-40 313.6 8.2 286 201-494 100-388 (389)
17 2x8a_A Nuclear valosin-contain 100.0 1E-35 3.5E-40 296.4 8.1 261 209-479 3-271 (274)
18 3h4m_A Proteasome-activating n 100.0 8.9E-34 3E-38 281.5 10.6 269 208-495 9-284 (285)
19 1ypw_A Transitional endoplasmi 100.0 9.9E-35 3.4E-39 328.4 3.2 284 207-491 468-763 (806)
20 3hu3_A Transitional endoplasmi 100.0 3.6E-34 1.2E-38 306.8 3.3 280 211-494 199-484 (489)
21 1lv7_A FTSH; alpha/beta domain 100.0 1.6E-31 5.5E-36 262.0 10.2 247 208-474 4-254 (257)
22 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.7E-31 5.9E-36 261.0 5.2 247 211-477 1-254 (262)
23 2ce7_A Cell division protein F 100.0 3.5E-31 1.2E-35 282.2 7.8 246 210-475 10-259 (476)
24 2r62_A Cell division protease 100.0 4.7E-32 1.6E-36 267.0 -0.1 252 209-479 4-260 (268)
25 1ixz_A ATP-dependent metallopr 100.0 4E-29 1.4E-33 244.5 9.7 246 205-470 5-254 (254)
26 2dhr_A FTSH; AAA+ protein, hex 100.0 2.3E-29 7.8E-34 269.6 8.6 246 211-476 26-275 (499)
27 1iy2_A ATP-dependent metallopr 99.9 9.7E-28 3.3E-32 238.3 11.3 243 208-470 32-278 (278)
28 1ypw_A Transitional endoplasmi 99.9 1.2E-27 4E-32 270.7 5.9 266 209-478 197-465 (806)
29 3t15_A Ribulose bisphosphate c 99.9 2.7E-26 9.1E-31 230.4 4.3 174 246-425 33-222 (293)
30 3m6a_A ATP-dependent protease 99.8 4.8E-23 1.6E-27 223.5 -2.9 200 170-397 46-266 (543)
31 2c9o_A RUVB-like 1; hexameric 99.8 8.5E-24 2.9E-28 224.7 -8.9 202 211-429 32-262 (456)
32 3syl_A Protein CBBX; photosynt 99.8 1.6E-21 5.3E-26 195.3 0.3 214 216-440 31-268 (309)
33 1ofh_A ATP-dependent HSL prote 99.8 3.4E-20 1.2E-24 184.7 5.2 252 216-474 15-301 (310)
34 3pfi_A Holliday junction ATP-d 99.8 9.7E-20 3.3E-24 184.8 6.1 170 204-401 17-201 (338)
35 3uk6_A RUVB-like 2; hexameric 99.8 1E-19 3.6E-24 186.4 4.2 221 211-473 39-331 (368)
36 1d2n_A N-ethylmaleimide-sensit 99.8 9.5E-19 3.3E-23 172.6 8.3 229 216-475 33-267 (272)
37 3pvs_A Replication-associated 99.7 1.8E-18 6E-23 183.4 7.8 228 205-478 15-250 (447)
38 3pxg_A Negative regulator of g 99.7 2.2E-18 7.4E-23 183.7 7.1 191 203-431 167-382 (468)
39 1jbk_A CLPB protein; beta barr 99.7 1.4E-18 4.8E-23 159.2 3.7 168 204-394 10-195 (195)
40 3hws_A ATP-dependent CLP prote 99.7 2.6E-18 9E-23 176.7 5.4 179 217-395 16-267 (363)
41 1g41_A Heat shock protein HSLU 99.7 2.9E-18 1E-22 180.6 5.5 166 216-393 15-188 (444)
42 3u61_B DNA polymerase accessor 99.7 3.6E-18 1.2E-22 172.3 5.3 159 205-397 15-178 (324)
43 2chg_A Replication factor C sm 99.7 1.6E-17 5.5E-22 155.7 9.2 207 206-470 7-224 (226)
44 1hqc_A RUVB; extended AAA-ATPa 99.7 8.5E-18 2.9E-22 169.0 6.8 166 209-401 5-185 (324)
45 3pxi_A Negative regulator of g 99.7 1.6E-17 5.6E-22 186.8 8.6 192 202-431 166-382 (758)
46 2chq_A Replication factor C sm 99.7 8.1E-17 2.8E-21 160.7 9.8 166 205-401 6-178 (319)
47 1r6b_X CLPA protein; AAA+, N-t 99.7 8.2E-18 2.8E-22 189.1 1.9 231 207-473 177-434 (758)
48 2v1u_A Cell division control p 99.7 2.2E-16 7.6E-21 161.4 11.1 169 213-398 16-215 (387)
49 2z4s_A Chromosomal replication 99.7 6.6E-17 2.3E-21 171.0 7.2 222 210-474 99-334 (440)
50 1njg_A DNA polymerase III subu 99.6 3.8E-17 1.3E-21 154.7 3.9 167 206-400 13-201 (250)
51 1sxj_D Activator 1 41 kDa subu 99.6 8.1E-17 2.8E-21 163.4 6.6 166 205-401 26-209 (353)
52 2p65_A Hypothetical protein PF 99.6 3.4E-17 1.2E-21 149.8 3.4 155 209-385 15-187 (187)
53 2qby_B CDC6 homolog 3, cell di 99.6 4.9E-16 1.7E-20 159.4 12.1 217 215-473 19-271 (384)
54 1l8q_A Chromosomal replication 99.6 1.3E-16 4.6E-21 161.1 7.2 168 210-401 5-183 (324)
55 1sxj_A Activator 1 95 kDa subu 99.6 6.1E-17 2.1E-21 174.5 4.3 182 204-400 27-225 (516)
56 4fcw_A Chaperone protein CLPB; 99.6 8.2E-17 2.8E-21 160.8 4.0 206 216-439 17-283 (311)
57 3bos_A Putative DNA replicatio 99.6 1.8E-16 6.1E-21 151.3 5.9 157 212-401 24-191 (242)
58 1um8_A ATP-dependent CLP prote 99.6 3.2E-16 1.1E-20 161.8 7.1 180 216-395 21-284 (376)
59 1qvr_A CLPB protein; coiled co 99.6 1.3E-16 4.5E-21 181.6 3.8 178 200-400 154-348 (854)
60 1iqp_A RFCS; clamp loader, ext 99.6 8E-16 2.7E-20 154.0 7.7 167 204-401 13-186 (327)
61 2r44_A Uncharacterized protein 99.6 2.4E-16 8.1E-21 159.6 2.9 157 212-400 23-201 (331)
62 1sxj_B Activator 1 37 kDa subu 99.6 9.2E-16 3.1E-20 153.3 6.7 159 206-399 11-181 (323)
63 2qby_A CDC6 homolog 1, cell di 99.6 4.3E-15 1.5E-19 151.5 10.9 168 212-398 16-211 (386)
64 1g8p_A Magnesium-chelatase 38 99.6 4.8E-16 1.6E-20 157.7 3.4 163 209-396 17-231 (350)
65 2bjv_A PSP operon transcriptio 99.6 9.3E-16 3.2E-20 150.4 4.5 201 213-446 3-237 (265)
66 1ojl_A Transcriptional regulat 99.6 2.2E-16 7.4E-21 159.1 -1.0 214 216-469 2-249 (304)
67 3pxi_A Negative regulator of g 99.5 1.6E-15 5.6E-20 170.4 4.7 202 216-437 491-727 (758)
68 3te6_A Regulatory protein SIR3 99.5 2.3E-15 7.8E-20 152.4 5.3 159 218-399 22-213 (318)
69 1jr3_A DNA polymerase III subu 99.5 4E-15 1.4E-19 152.0 6.7 161 206-400 6-194 (373)
70 1fnn_A CDC6P, cell division co 99.5 1.3E-14 4.4E-19 148.7 9.0 165 214-399 15-208 (389)
71 1in4_A RUVB, holliday junction 99.5 8.3E-15 2.8E-19 149.2 7.5 221 206-473 15-251 (334)
72 1sxj_C Activator 1 40 kDa subu 99.5 1.5E-14 5.1E-19 147.2 8.8 217 205-474 14-241 (340)
73 1sxj_E Activator 1 40 kDa subu 99.5 5.1E-15 1.7E-19 150.6 4.5 163 205-400 3-209 (354)
74 1r6b_X CLPA protein; AAA+, N-t 99.5 6.9E-15 2.4E-19 165.2 5.7 203 217-437 459-718 (758)
75 3n70_A Transport activator; si 99.5 2E-14 6.8E-19 128.7 5.6 132 217-385 2-143 (145)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.6E-14 5.4E-19 154.8 5.8 155 216-398 22-197 (500)
77 3f9v_A Minichromosome maintena 99.5 6.5E-15 2.2E-19 161.3 1.3 167 216-401 295-494 (595)
78 1qvr_A CLPB protein; coiled co 99.4 3.2E-14 1.1E-18 162.1 5.7 207 215-439 557-824 (854)
79 3co5_A Putative two-component 99.4 8.4E-15 2.9E-19 130.9 0.1 132 217-385 5-141 (143)
80 1a5t_A Delta prime, HOLB; zinc 99.3 2.5E-12 8.5E-17 130.8 5.6 146 221-397 7-180 (334)
81 2gno_A DNA polymerase III, gam 99.2 1.2E-11 4.2E-16 124.5 7.9 142 220-397 1-152 (305)
82 3dzd_A Transcriptional regulat 99.2 2.5E-12 8.7E-17 132.8 2.7 228 188-449 101-361 (368)
83 1w5s_A Origin recognition comp 99.2 1.4E-11 4.8E-16 127.1 7.9 172 214-398 20-229 (412)
84 3k1j_A LON protease, ATP-depen 99.2 2E-12 7E-17 141.8 1.5 53 208-274 33-85 (604)
85 1ny5_A Transcriptional regulat 99.2 1.7E-12 5.8E-17 134.9 0.1 215 215-469 136-384 (387)
86 3cmw_A Protein RECA, recombina 99.1 3.9E-11 1.3E-15 143.1 4.6 152 211-364 1015-1218(1706)
87 4akg_A Glutathione S-transfera 99.0 1.5E-10 5.1E-15 143.5 6.0 140 248-399 1266-1433(2695)
88 3vlf_B 26S protease regulatory 99.0 8.3E-11 2.8E-15 96.7 1.1 85 385-487 2-88 (88)
89 3ec2_A DNA replication protein 99.0 1.4E-10 4.9E-15 106.6 1.9 100 209-319 3-111 (180)
90 3aji_B S6C, proteasome (prosom 98.9 2.5E-10 8.7E-15 92.5 1.7 81 385-483 2-82 (83)
91 2krk_A 26S protease regulatory 98.9 1.7E-10 5.7E-15 94.5 0.1 78 380-475 7-84 (86)
92 2kjq_A DNAA-related protein; s 98.9 6.7E-10 2.3E-14 100.0 4.1 104 250-382 37-146 (149)
93 3kw6_A 26S protease regulatory 98.8 3.9E-10 1.3E-14 90.3 -0.2 75 382-474 1-75 (78)
94 2w58_A DNAI, primosome compone 98.8 9E-10 3.1E-14 102.9 0.7 99 212-320 21-127 (202)
95 2fna_A Conserved hypothetical 98.7 4E-09 1.4E-13 105.9 2.0 179 211-419 8-243 (357)
96 2qen_A Walker-type ATPase; unk 98.6 1.5E-08 5E-13 101.6 4.3 183 211-419 7-239 (350)
97 2r2a_A Uncharacterized protein 98.6 1.4E-08 4.7E-13 95.9 2.4 126 251-387 7-156 (199)
98 2dzn_B 26S protease regulatory 98.5 1.1E-08 3.7E-13 82.8 0.0 79 387-483 1-81 (82)
99 2vhj_A Ntpase P4, P4; non- hyd 98.5 2E-08 6.8E-13 101.3 1.5 120 247-371 121-242 (331)
100 2qgz_A Helicase loader, putati 98.5 1.4E-08 4.7E-13 102.2 -0.6 98 212-320 120-226 (308)
101 3f8t_A Predicted ATPase involv 98.4 1.2E-08 4E-13 107.6 -2.0 146 217-388 214-385 (506)
102 1tue_A Replication protein E1; 98.4 1.4E-07 4.8E-12 89.2 3.9 31 249-279 58-88 (212)
103 4akg_A Glutathione S-transfera 98.4 2.7E-07 9.4E-12 114.7 7.0 130 250-393 646-789 (2695)
104 3vkg_A Dynein heavy chain, cyt 98.2 5.6E-07 1.9E-11 112.8 5.1 142 249-397 1304-1469(3245)
105 1u0j_A DNA replication protein 98.0 2.5E-06 8.4E-11 83.9 4.1 26 249-274 104-129 (267)
106 3cmu_A Protein RECA, recombina 98.0 2.3E-06 7.8E-11 103.7 4.3 117 246-364 1424-1563(2050)
107 1ye8_A Protein THEP1, hypothet 97.9 2.1E-05 7E-10 72.6 8.6 26 251-276 2-27 (178)
108 1jr3_D DNA polymerase III, del 97.8 1E-05 3.5E-10 81.8 3.4 126 250-402 19-160 (343)
109 3vkg_A Dynein heavy chain, cyt 97.8 2.6E-05 9E-10 98.0 7.5 134 250-393 605-749 (3245)
110 1svm_A Large T antigen; AAA+ f 97.6 7.1E-06 2.4E-10 84.7 -1.1 114 246-381 166-282 (377)
111 1z6t_A APAF-1, apoptotic prote 97.6 8.9E-05 3E-09 80.1 7.3 49 214-272 122-170 (591)
112 2c9o_A RUVB-like 1; hexameric 97.5 8.9E-06 3E-10 85.9 -1.2 131 309-473 296-438 (456)
113 1qhx_A CPT, protein (chloramph 97.5 5.2E-05 1.8E-09 68.6 3.5 35 250-284 4-38 (178)
114 3trf_A Shikimate kinase, SK; a 97.4 6.7E-05 2.3E-09 68.4 3.3 33 249-281 5-37 (185)
115 2cvh_A DNA repair and recombin 97.4 0.00019 6.4E-09 66.9 6.3 39 246-284 17-55 (220)
116 2ehv_A Hypothetical protein PH 97.4 0.00036 1.2E-08 66.2 8.3 25 246-270 27-51 (251)
117 3upu_A ATP-dependent DNA helic 97.4 0.00011 3.8E-09 77.4 5.1 56 205-273 13-69 (459)
118 1n0w_A DNA repair protein RAD5 97.4 7.4E-05 2.5E-09 70.8 3.1 39 246-284 21-68 (243)
119 2z43_A DNA repair and recombin 97.4 0.00013 4.3E-09 73.5 4.9 78 246-323 104-218 (324)
120 3vaa_A Shikimate kinase, SK; s 97.3 9.8E-05 3.3E-09 68.6 3.4 34 248-281 24-57 (199)
121 4a74_A DNA repair and recombin 97.3 0.00017 6E-09 67.5 4.7 28 246-273 22-49 (231)
122 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00025 8.4E-09 66.4 5.7 27 247-273 21-47 (235)
123 3sfz_A APAF-1, apoptotic pepti 97.3 0.00034 1.2E-08 81.4 7.9 52 211-272 119-170 (1249)
124 1g41_A Heat shock protein HSLU 97.3 7.3E-05 2.5E-09 78.6 2.0 99 292-394 236-346 (444)
125 3hr8_A Protein RECA; alpha and 97.2 0.00019 6.4E-09 73.5 4.6 77 246-322 58-153 (356)
126 2zr9_A Protein RECA, recombina 97.2 0.0003 1E-08 71.7 6.0 76 246-321 58-152 (349)
127 3kb2_A SPBC2 prophage-derived 97.2 0.00016 5.6E-09 64.5 3.5 31 251-281 3-33 (173)
128 1v5w_A DMC1, meiotic recombina 97.2 0.00028 9.4E-09 71.7 5.4 78 246-323 119-234 (343)
129 3iij_A Coilin-interacting nucl 97.2 0.00019 6.4E-09 65.2 3.6 32 250-281 12-43 (180)
130 1via_A Shikimate kinase; struc 97.2 0.00017 5.9E-09 65.2 3.3 30 251-280 6-35 (175)
131 2rhm_A Putative kinase; P-loop 97.2 0.00018 6.1E-09 65.7 3.4 32 249-280 5-36 (193)
132 2orw_A Thymidine kinase; TMTK, 97.2 9.5E-05 3.2E-09 68.4 1.3 31 250-280 4-37 (184)
133 1xp8_A RECA protein, recombina 97.1 0.00027 9.4E-09 72.5 4.7 77 246-322 71-166 (366)
134 1y63_A LMAJ004144AAA protein; 97.1 0.00023 7.8E-09 65.3 3.6 32 250-281 11-43 (184)
135 2iyv_A Shikimate kinase, SK; t 97.1 0.00019 6.6E-09 65.3 3.1 31 251-281 4-34 (184)
136 1zuh_A Shikimate kinase; alpha 97.1 0.00021 7.1E-09 64.2 3.3 32 250-281 8-39 (168)
137 2p5t_B PEZT; postsegregational 97.1 0.00065 2.2E-08 65.6 6.7 38 248-285 31-68 (253)
138 1zp6_A Hypothetical protein AT 97.1 0.00029 9.9E-09 64.3 3.8 38 248-285 8-45 (191)
139 1kag_A SKI, shikimate kinase I 97.1 0.00029 9.9E-09 63.2 3.5 30 250-279 5-34 (173)
140 1tev_A UMP-CMP kinase; ploop, 97.0 0.0003 1E-08 64.0 3.5 31 250-280 4-34 (196)
141 3crm_A TRNA delta(2)-isopenten 97.0 0.0003 1E-08 70.9 3.7 36 250-285 6-41 (323)
142 3lw7_A Adenylate kinase relate 97.0 0.00028 9.6E-09 62.7 3.1 29 251-280 3-31 (179)
143 2cdn_A Adenylate kinase; phosp 97.0 0.00032 1.1E-08 64.9 3.6 31 250-280 21-51 (201)
144 2c95_A Adenylate kinase 1; tra 97.0 0.00032 1.1E-08 64.2 3.4 32 250-281 10-41 (196)
145 1e6c_A Shikimate kinase; phosp 97.0 0.00031 1.1E-08 62.9 3.3 31 250-280 3-33 (173)
146 2b8t_A Thymidine kinase; deoxy 97.0 0.00077 2.6E-08 64.4 6.1 31 250-280 13-46 (223)
147 3cm0_A Adenylate kinase; ATP-b 97.0 0.00031 1.1E-08 63.8 3.2 31 250-280 5-35 (186)
148 1ly1_A Polynucleotide kinase; 97.0 0.00034 1.2E-08 62.9 3.3 30 250-279 3-33 (181)
149 2ze6_A Isopentenyl transferase 97.0 0.00035 1.2E-08 67.7 3.6 32 251-282 3-34 (253)
150 1vma_A Cell division protein F 97.0 0.0014 4.9E-08 65.5 8.1 71 247-317 102-195 (306)
151 1aky_A Adenylate kinase; ATP:A 97.0 0.00038 1.3E-08 65.5 3.6 31 250-280 5-35 (220)
152 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00032 1.1E-08 71.5 3.2 53 220-280 3-55 (359)
153 1kht_A Adenylate kinase; phosp 97.0 0.00037 1.3E-08 63.3 3.3 25 250-274 4-28 (192)
154 1gvn_B Zeta; postsegregational 97.0 0.00061 2.1E-08 67.4 5.0 37 249-285 33-69 (287)
155 3dm5_A SRP54, signal recogniti 96.9 0.002 7E-08 67.5 9.1 70 248-317 99-191 (443)
156 3cmu_A Protein RECA, recombina 96.9 0.00033 1.1E-08 85.1 3.4 78 245-322 728-824 (2050)
157 2dr3_A UPF0273 protein PH0284; 96.9 0.0012 4.1E-08 62.4 6.7 36 246-281 20-58 (247)
158 3t61_A Gluconokinase; PSI-biol 96.9 0.00048 1.6E-08 63.7 3.8 31 250-280 19-49 (202)
159 2bwj_A Adenylate kinase 5; pho 96.9 0.00045 1.5E-08 63.3 3.2 31 250-280 13-43 (199)
160 2vli_A Antibiotic resistance p 96.9 0.00041 1.4E-08 62.8 2.9 29 250-278 6-34 (183)
161 2pt5_A Shikimate kinase, SK; a 96.9 0.00045 1.6E-08 61.6 3.1 30 251-280 2-31 (168)
162 1qf9_A UMP/CMP kinase, protein 96.9 0.00049 1.7E-08 62.5 3.4 31 250-280 7-37 (194)
163 3dl0_A Adenylate kinase; phosp 96.9 0.00044 1.5E-08 64.7 3.0 30 251-280 2-31 (216)
164 1zd8_A GTP:AMP phosphotransfer 96.9 0.00046 1.6E-08 65.3 3.2 31 250-280 8-38 (227)
165 1knq_A Gluconate kinase; ALFA/ 96.9 0.00065 2.2E-08 61.2 4.0 30 250-279 9-38 (175)
166 1ak2_A Adenylate kinase isoenz 96.9 0.00056 1.9E-08 65.1 3.7 31 250-280 17-47 (233)
167 1u94_A RECA protein, recombina 96.9 0.00087 3E-08 68.5 5.4 77 246-322 60-155 (356)
168 3fb4_A Adenylate kinase; psych 96.8 0.00047 1.6E-08 64.4 3.1 30 251-280 2-31 (216)
169 1zak_A Adenylate kinase; ATP:A 96.8 0.00043 1.5E-08 65.2 2.8 31 250-280 6-36 (222)
170 2i1q_A DNA repair and recombin 96.8 0.00055 1.9E-08 68.5 3.6 27 246-272 95-121 (322)
171 1ukz_A Uridylate kinase; trans 96.8 0.0006 2E-08 63.0 3.6 32 250-281 16-47 (203)
172 3tlx_A Adenylate kinase 2; str 96.8 0.00062 2.1E-08 65.4 3.7 32 249-280 29-60 (243)
173 2zts_A Putative uncharacterize 96.8 0.0043 1.5E-07 58.5 9.5 37 245-281 26-66 (251)
174 3lda_A DNA repair protein RAD5 96.8 0.00042 1.4E-08 72.0 2.6 25 246-270 175-199 (400)
175 1pzn_A RAD51, DNA repair and r 96.8 0.00065 2.2E-08 69.2 3.9 38 246-283 128-174 (349)
176 3be4_A Adenylate kinase; malar 96.8 0.00062 2.1E-08 64.0 3.4 31 250-280 6-36 (217)
177 3foz_A TRNA delta(2)-isopenten 96.8 0.00065 2.2E-08 68.1 3.6 37 250-286 11-47 (316)
178 3umf_A Adenylate kinase; rossm 96.7 0.00085 2.9E-08 63.8 3.8 38 247-286 27-64 (217)
179 4eun_A Thermoresistant glucoki 96.7 0.00095 3.2E-08 61.8 4.1 30 249-278 29-58 (200)
180 4gp7_A Metallophosphoesterase; 96.7 0.0026 8.8E-08 57.6 6.8 22 248-269 8-29 (171)
181 3e1s_A Exodeoxyribonuclease V, 96.7 0.00062 2.1E-08 73.9 3.1 31 250-280 205-238 (574)
182 2iut_A DNA translocase FTSK; n 96.7 0.0034 1.1E-07 67.8 8.4 74 310-394 345-420 (574)
183 1g5t_A COB(I)alamin adenosyltr 96.6 0.0034 1.2E-07 58.7 7.2 114 250-379 29-175 (196)
184 1e4v_A Adenylate kinase; trans 96.6 0.00077 2.6E-08 63.1 2.8 30 251-280 2-31 (214)
185 1nks_A Adenylate kinase; therm 96.6 0.00084 2.9E-08 60.9 2.9 24 251-274 3-26 (194)
186 3jvv_A Twitching mobility prot 96.6 0.0014 4.9E-08 66.8 5.0 68 250-317 124-205 (356)
187 2v54_A DTMP kinase, thymidylat 96.6 0.0014 4.7E-08 60.3 4.3 32 250-281 5-37 (204)
188 2pbr_A DTMP kinase, thymidylat 96.6 0.0012 4E-08 60.0 3.8 31 251-281 2-35 (195)
189 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0012 4.1E-08 64.0 4.1 36 250-285 5-43 (260)
190 2ius_A DNA translocase FTSK; n 96.6 0.0083 2.8E-07 64.1 10.8 74 311-395 300-375 (512)
191 2eyu_A Twitching motility prot 96.6 0.0011 3.8E-08 64.7 3.8 68 249-317 25-107 (261)
192 2jaq_A Deoxyguanosine kinase; 96.6 0.0011 3.7E-08 60.8 3.5 29 251-279 2-30 (205)
193 2pez_A Bifunctional 3'-phospho 96.6 0.0014 4.9E-08 59.2 4.2 35 250-284 6-43 (179)
194 3kl4_A SRP54, signal recogniti 96.6 0.012 4.2E-07 61.5 11.7 70 248-317 96-188 (433)
195 3sr0_A Adenylate kinase; phosp 96.6 0.0011 3.8E-08 62.4 3.4 33 251-285 2-34 (206)
196 2bbw_A Adenylate kinase 4, AK4 96.5 0.0012 4.2E-08 63.1 3.7 30 249-278 27-56 (246)
197 2xb4_A Adenylate kinase; ATP-b 96.5 0.0011 3.8E-08 62.7 3.2 30 251-280 2-31 (223)
198 3uie_A Adenylyl-sulfate kinase 96.5 0.0015 5.1E-08 60.5 3.8 37 249-285 25-64 (200)
199 2if2_A Dephospho-COA kinase; a 96.5 0.0012 4.1E-08 61.0 3.0 30 251-281 3-32 (204)
200 2z0h_A DTMP kinase, thymidylat 96.5 0.0016 5.6E-08 59.3 3.8 30 252-281 3-35 (197)
201 1cke_A CK, MSSA, protein (cyti 96.5 0.0016 5.4E-08 61.0 3.7 30 250-279 6-35 (227)
202 3exa_A TRNA delta(2)-isopenten 96.4 0.001 3.5E-08 66.8 2.4 37 250-286 4-40 (322)
203 2px0_A Flagellar biosynthesis 96.4 0.0077 2.6E-07 59.8 8.8 35 248-282 104-142 (296)
204 2wwf_A Thymidilate kinase, put 96.4 0.0011 3.6E-08 61.5 2.4 31 250-280 11-41 (212)
205 3a8t_A Adenylate isopentenyltr 96.4 0.0019 6.4E-08 65.5 4.0 34 250-283 41-74 (339)
206 1nn5_A Similar to deoxythymidy 96.4 0.0013 4.4E-08 60.9 2.4 29 250-278 10-38 (215)
207 3cmw_A Protein RECA, recombina 96.3 0.0022 7.6E-08 77.1 4.9 78 245-322 728-824 (1706)
208 3nwj_A ATSK2; P loop, shikimat 96.3 0.0018 6E-08 62.9 3.4 32 250-281 49-80 (250)
209 3io5_A Recombination and repai 96.3 0.0018 6.2E-08 65.1 3.5 76 246-322 26-125 (333)
210 2plr_A DTMP kinase, probable t 96.3 0.0018 6.3E-08 59.6 3.2 26 250-275 5-30 (213)
211 2r8r_A Sensor protein; KDPD, P 96.3 0.002 6.8E-08 61.7 3.4 32 250-281 7-41 (228)
212 1jjv_A Dephospho-COA kinase; P 96.3 0.0018 6E-08 60.0 3.0 29 251-280 4-32 (206)
213 3ake_A Cytidylate kinase; CMP 96.3 0.0018 6.1E-08 59.6 3.0 31 251-281 4-34 (208)
214 1ex7_A Guanylate kinase; subst 96.3 0.002 6.8E-08 59.8 3.2 24 250-273 2-25 (186)
215 1uf9_A TT1252 protein; P-loop, 96.3 0.002 7E-08 59.0 3.2 31 249-280 8-38 (203)
216 2grj_A Dephospho-COA kinase; T 96.2 0.0022 7.5E-08 59.6 3.2 31 251-281 14-44 (192)
217 3r20_A Cytidylate kinase; stru 96.2 0.003 1E-07 60.7 4.0 30 250-279 10-39 (233)
218 2qt1_A Nicotinamide riboside k 96.2 0.0028 9.7E-08 58.7 3.7 33 249-281 21-54 (207)
219 3zvl_A Bifunctional polynucleo 96.2 0.0075 2.6E-07 62.7 7.3 32 249-280 258-289 (416)
220 2yvu_A Probable adenylyl-sulfa 96.2 0.0035 1.2E-07 57.1 4.1 34 249-282 13-49 (186)
221 2ewv_A Twitching motility prot 96.2 0.002 7E-08 66.0 2.9 69 249-317 136-218 (372)
222 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0019 6.6E-08 65.1 2.5 70 249-318 171-250 (330)
223 3eph_A TRNA isopentenyltransfe 96.1 0.001 3.4E-08 69.0 0.3 33 250-282 3-35 (409)
224 2qor_A Guanylate kinase; phosp 96.1 0.0028 9.7E-08 58.8 3.2 27 248-274 11-37 (204)
225 2fz4_A DNA repair protein RAD2 96.1 0.0036 1.2E-07 59.8 4.1 33 250-282 109-141 (237)
226 1uj2_A Uridine-cytidine kinase 96.0 0.0046 1.6E-07 59.4 4.6 37 250-286 23-67 (252)
227 4e22_A Cytidylate kinase; P-lo 96.0 0.0043 1.5E-07 59.8 4.2 30 250-279 28-57 (252)
228 1ltq_A Polynucleotide kinase; 96.0 0.0032 1.1E-07 61.8 3.3 32 250-281 3-35 (301)
229 1vht_A Dephospho-COA kinase; s 96.0 0.0038 1.3E-07 58.3 3.7 30 250-280 5-34 (218)
230 2j41_A Guanylate kinase; GMP, 96.0 0.0034 1.2E-07 57.7 3.2 25 249-273 6-30 (207)
231 1m7g_A Adenylylsulfate kinase; 95.9 0.0041 1.4E-07 58.0 3.6 36 249-284 25-64 (211)
232 2r6a_A DNAB helicase, replicat 95.9 0.0077 2.6E-07 63.2 6.0 37 246-282 200-240 (454)
233 2h92_A Cytidylate kinase; ross 95.9 0.004 1.4E-07 58.0 3.4 32 250-281 4-35 (219)
234 2qmh_A HPR kinase/phosphorylas 95.9 0.005 1.7E-07 57.8 3.8 36 249-285 34-69 (205)
235 2bdt_A BH3686; alpha-beta prot 95.9 0.0045 1.5E-07 56.4 3.5 25 251-275 4-28 (189)
236 1q3t_A Cytidylate kinase; nucl 95.9 0.0046 1.6E-07 58.7 3.7 32 249-280 16-47 (236)
237 3tau_A Guanylate kinase, GMP k 95.8 0.0043 1.5E-07 57.9 3.3 26 249-274 8-33 (208)
238 3d3q_A TRNA delta(2)-isopenten 95.8 0.0045 1.5E-07 62.8 3.6 33 250-282 8-40 (340)
239 3thx_B DNA mismatch repair pro 95.8 0.015 5E-07 66.4 8.0 23 249-271 673-695 (918)
240 2a5y_B CED-4; apoptosis; HET: 95.8 0.011 3.9E-07 63.4 6.8 44 219-271 131-174 (549)
241 1kgd_A CASK, peripheral plasma 95.8 0.0047 1.6E-07 56.2 3.2 25 250-274 6-30 (180)
242 2f6r_A COA synthase, bifunctio 95.7 0.0062 2.1E-07 59.8 4.1 30 250-280 76-105 (281)
243 3c8u_A Fructokinase; YP_612366 95.7 0.0068 2.3E-07 56.4 4.0 26 249-274 22-47 (208)
244 1vt4_I APAF-1 related killer D 95.7 0.012 4.2E-07 67.7 6.7 44 218-272 130-173 (1221)
245 2yhs_A FTSY, cell division pro 95.6 0.051 1.8E-06 57.7 10.8 27 247-273 291-317 (503)
246 3tr0_A Guanylate kinase, GMP k 95.6 0.006 2.1E-07 56.0 3.3 25 250-274 8-32 (205)
247 3asz_A Uridine kinase; cytidin 95.5 0.0075 2.6E-07 55.8 3.7 29 250-278 7-37 (211)
248 2q6t_A DNAB replication FORK h 95.5 0.012 4E-07 61.7 5.4 37 246-282 197-237 (444)
249 2oap_1 GSPE-2, type II secreti 95.4 0.0075 2.6E-07 64.5 3.6 69 249-317 260-342 (511)
250 1j8m_F SRP54, signal recogniti 95.4 0.098 3.4E-06 51.7 11.5 34 249-282 98-134 (297)
251 1lvg_A Guanylate kinase, GMP k 95.4 0.007 2.4E-07 56.1 2.9 25 249-273 4-28 (198)
252 2j37_W Signal recognition part 95.3 0.033 1.1E-06 59.3 8.3 35 248-282 100-137 (504)
253 3fdi_A Uncharacterized protein 95.3 0.0083 2.8E-07 56.0 3.2 29 251-279 8-36 (201)
254 1w4r_A Thymidine kinase; type 95.3 0.0071 2.4E-07 56.4 2.6 33 250-282 21-56 (195)
255 3e70_C DPA, signal recognition 95.3 0.044 1.5E-06 55.1 8.6 26 248-273 128-153 (328)
256 3a00_A Guanylate kinase, GMP k 95.3 0.0081 2.8E-07 54.8 2.8 25 250-274 2-26 (186)
257 4b3f_X DNA-binding protein smu 95.3 0.029 9.9E-07 61.5 7.7 32 251-282 207-241 (646)
258 2gxq_A Heat resistant RNA depe 95.2 0.025 8.7E-07 51.7 6.2 17 250-266 39-55 (207)
259 3thx_A DNA mismatch repair pro 95.2 0.025 8.7E-07 64.6 7.1 22 250-271 663-684 (934)
260 1rz3_A Hypothetical protein rb 95.1 0.016 5.5E-07 53.5 4.5 32 250-281 23-57 (201)
261 1gtv_A TMK, thymidylate kinase 95.1 0.0061 2.1E-07 56.3 1.4 24 251-274 2-25 (214)
262 1zu4_A FTSY; GTPase, signal re 95.0 0.035 1.2E-06 55.6 7.0 36 247-282 103-141 (320)
263 3ney_A 55 kDa erythrocyte memb 95.0 0.012 4.1E-07 55.0 3.2 25 250-274 20-44 (197)
264 1htw_A HI0065; nucleotide-bind 95.0 0.014 4.8E-07 52.4 3.4 25 249-273 33-57 (158)
265 1znw_A Guanylate kinase, GMP k 94.9 0.012 4.2E-07 54.5 3.1 27 248-274 19-45 (207)
266 3b9q_A Chloroplast SRP recepto 94.9 0.045 1.5E-06 54.4 7.4 27 247-273 98-124 (302)
267 3b6e_A Interferon-induced heli 94.9 0.014 4.7E-07 53.6 3.3 24 250-273 49-72 (216)
268 1z6g_A Guanylate kinase; struc 94.9 0.012 4.2E-07 55.3 3.0 27 247-273 21-47 (218)
269 3gmt_A Adenylate kinase; ssgci 94.8 0.012 4.1E-07 56.3 2.8 30 251-280 10-39 (230)
270 2v3c_C SRP54, signal recogniti 94.8 0.026 8.9E-07 59.0 5.6 34 249-282 99-135 (432)
271 1x6v_B Bifunctional 3'-phospho 94.8 0.016 5.6E-07 63.3 4.0 36 250-285 53-91 (630)
272 3fe2_A Probable ATP-dependent 94.8 0.071 2.4E-06 50.4 8.0 18 250-267 67-84 (242)
273 2xxa_A Signal recognition part 94.7 0.046 1.6E-06 57.1 7.1 36 248-283 99-138 (433)
274 4eaq_A DTMP kinase, thymidylat 94.7 0.018 6E-07 54.8 3.4 26 249-274 26-51 (229)
275 1a7j_A Phosphoribulokinase; tr 94.6 0.012 4.1E-07 58.2 2.3 35 251-285 7-44 (290)
276 1s96_A Guanylate kinase, GMP k 94.6 0.017 5.8E-07 54.6 3.2 27 248-274 15-41 (219)
277 1rj9_A FTSY, signal recognitio 94.6 0.035 1.2E-06 55.2 5.6 25 249-273 102-126 (304)
278 1c9k_A COBU, adenosylcobinamid 94.6 0.02 6.7E-07 52.8 3.4 32 252-284 2-33 (180)
279 1ls1_A Signal recognition part 94.6 0.053 1.8E-06 53.5 6.8 70 248-317 97-189 (295)
280 2v9p_A Replication protein E1; 94.5 0.018 6.2E-07 57.4 3.3 31 247-277 124-154 (305)
281 3hdt_A Putative kinase; struct 94.5 0.019 6.5E-07 54.6 3.2 29 251-279 16-44 (223)
282 3lnc_A Guanylate kinase, GMP k 94.5 0.013 4.3E-07 55.3 1.9 25 249-273 27-52 (231)
283 2jeo_A Uridine-cytidine kinase 94.4 0.02 7E-07 54.6 3.3 27 250-276 26-52 (245)
284 1nlf_A Regulatory protein REPA 94.4 0.023 7.8E-07 55.3 3.6 28 246-273 27-54 (279)
285 3iuy_A Probable ATP-dependent 94.4 0.12 4E-06 48.2 8.4 18 250-267 58-75 (228)
286 1tf7_A KAIC; homohexamer, hexa 94.3 0.035 1.2E-06 59.3 5.2 75 246-320 278-383 (525)
287 2og2_A Putative signal recogni 94.3 0.033 1.1E-06 56.8 4.8 27 247-273 155-181 (359)
288 1p5z_B DCK, deoxycytidine kina 94.3 0.017 5.9E-07 55.6 2.4 29 250-278 25-54 (263)
289 1cr0_A DNA primase/helicase; R 94.2 0.021 7.2E-07 55.9 3.1 27 247-273 33-59 (296)
290 2axn_A 6-phosphofructo-2-kinas 94.1 0.024 8.1E-07 60.7 3.4 27 250-276 36-62 (520)
291 3bh0_A DNAB-like replicative h 94.1 0.04 1.4E-06 54.9 4.7 37 246-282 65-104 (315)
292 1wb9_A DNA mismatch repair pro 94.0 0.064 2.2E-06 60.3 6.8 23 250-272 608-630 (800)
293 2i3b_A HCR-ntpase, human cance 94.0 0.025 8.5E-07 52.3 2.9 23 251-273 3-25 (189)
294 3oiy_A Reverse gyrase helicase 94.0 0.096 3.3E-06 53.4 7.6 20 250-269 37-56 (414)
295 1sky_E F1-ATPase, F1-ATP synth 94.0 0.029 9.8E-07 59.2 3.5 25 250-274 152-176 (473)
296 1m8p_A Sulfate adenylyltransfe 94.0 0.028 9.5E-07 60.9 3.6 35 250-284 397-435 (573)
297 3p32_A Probable GTPase RV1496/ 93.9 0.06 2.1E-06 54.5 5.8 31 250-280 80-113 (355)
298 2ffh_A Protein (FFH); SRP54, s 93.9 0.13 4.3E-06 53.7 8.2 35 248-282 97-134 (425)
299 1p9r_A General secretion pathw 93.8 0.042 1.4E-06 57.2 4.5 25 250-274 168-192 (418)
300 3tif_A Uncharacterized ABC tra 93.8 0.027 9.4E-07 53.7 2.8 28 246-273 28-55 (235)
301 1sq5_A Pantothenate kinase; P- 93.8 0.037 1.3E-06 54.9 3.8 25 250-274 81-105 (308)
302 2ocp_A DGK, deoxyguanosine kin 93.8 0.036 1.2E-06 52.6 3.5 25 250-274 3-27 (241)
303 1q57_A DNA primase/helicase; d 93.8 0.083 2.8E-06 55.9 6.7 79 204-282 188-279 (503)
304 2ged_A SR-beta, signal recogni 93.7 0.053 1.8E-06 48.7 4.5 24 250-273 49-72 (193)
305 3tqf_A HPR(Ser) kinase; transf 93.7 0.029 1E-06 51.4 2.7 24 249-272 16-39 (181)
306 2cbz_A Multidrug resistance-as 93.7 0.029 9.9E-07 53.6 2.8 28 246-273 28-55 (237)
307 3aez_A Pantothenate kinase; tr 93.7 0.034 1.2E-06 55.5 3.4 27 248-274 89-115 (312)
308 2pcj_A ABC transporter, lipopr 93.6 0.027 9.1E-07 53.4 2.3 27 247-273 28-54 (224)
309 1xjc_A MOBB protein homolog; s 93.6 0.053 1.8E-06 49.3 4.1 24 250-273 5-28 (169)
310 3k53_A Ferrous iron transport 93.5 0.086 2.9E-06 50.9 5.8 24 250-273 4-27 (271)
311 1odf_A YGR205W, hypothetical 3 93.5 0.039 1.3E-06 54.5 3.3 26 250-275 32-57 (290)
312 3cr8_A Sulfate adenylyltranfer 93.4 0.032 1.1E-06 60.2 2.8 36 249-284 369-408 (552)
313 1bif_A 6-phosphofructo-2-kinas 93.4 0.031 1E-06 58.9 2.6 27 250-276 40-66 (469)
314 1mv5_A LMRA, multidrug resista 93.4 0.036 1.2E-06 53.1 2.9 28 246-273 25-52 (243)
315 1b0u_A Histidine permease; ABC 93.4 0.036 1.2E-06 53.8 2.9 27 247-273 30-56 (262)
316 2onk_A Molybdate/tungstate ABC 93.3 0.041 1.4E-06 52.8 3.0 27 246-273 22-48 (240)
317 2qm8_A GTPase/ATPase; G protei 93.2 0.12 4.1E-06 52.0 6.5 24 250-273 56-79 (337)
318 2pze_A Cystic fibrosis transme 93.2 0.037 1.3E-06 52.6 2.6 27 247-273 32-58 (229)
319 2j9r_A Thymidine kinase; TK1, 93.2 0.045 1.6E-06 51.7 3.1 30 252-281 31-63 (214)
320 3kta_A Chromosome segregation 93.2 0.04 1.4E-06 49.5 2.7 24 251-274 28-51 (182)
321 1g6h_A High-affinity branched- 93.2 0.037 1.3E-06 53.5 2.5 27 247-273 31-57 (257)
322 2ghi_A Transport protein; mult 93.1 0.041 1.4E-06 53.4 2.8 28 246-273 43-70 (260)
323 3tqc_A Pantothenate kinase; bi 93.1 0.06 2E-06 54.0 4.1 25 250-274 93-117 (321)
324 3ice_A Transcription terminati 93.1 0.091 3.1E-06 54.2 5.4 25 249-273 174-198 (422)
325 2xau_A PRE-mRNA-splicing facto 93.1 0.062 2.1E-06 60.3 4.6 24 249-272 109-132 (773)
326 1sgw_A Putative ABC transporte 93.1 0.038 1.3E-06 52.1 2.5 27 247-273 33-59 (214)
327 3b85_A Phosphate starvation-in 93.1 0.039 1.3E-06 51.8 2.5 23 250-272 23-45 (208)
328 2f9l_A RAB11B, member RAS onco 93.1 0.044 1.5E-06 49.9 2.8 23 250-272 6-28 (199)
329 1np6_A Molybdopterin-guanine d 93.0 0.046 1.6E-06 49.9 2.8 24 250-273 7-30 (174)
330 2ff7_A Alpha-hemolysin translo 93.0 0.04 1.4E-06 53.1 2.5 27 247-273 33-59 (247)
331 1g8f_A Sulfate adenylyltransfe 93.0 0.075 2.6E-06 56.7 4.9 26 250-275 396-421 (511)
332 2dyk_A GTP-binding protein; GT 93.0 0.048 1.7E-06 47.1 2.9 23 250-272 2-24 (161)
333 2olj_A Amino acid ABC transpor 93.0 0.044 1.5E-06 53.3 2.9 27 247-273 48-74 (263)
334 2ixe_A Antigen peptide transpo 93.0 0.043 1.5E-06 53.6 2.8 27 247-273 43-69 (271)
335 2zu0_C Probable ATP-dependent 93.0 0.047 1.6E-06 53.1 3.1 27 247-273 44-70 (267)
336 2d2e_A SUFC protein; ABC-ATPas 93.0 0.043 1.5E-06 52.8 2.8 26 247-272 27-52 (250)
337 1ji0_A ABC transporter; ATP bi 93.0 0.041 1.4E-06 52.6 2.5 27 247-273 30-56 (240)
338 1oix_A RAS-related protein RAB 93.0 0.042 1.4E-06 49.9 2.5 23 251-273 31-53 (191)
339 2gk6_A Regulator of nonsense t 93.0 0.065 2.2E-06 58.5 4.4 23 251-273 197-219 (624)
340 2qi9_C Vitamin B12 import ATP- 92.9 0.043 1.5E-06 53.0 2.6 28 247-274 24-51 (249)
341 3gfo_A Cobalt import ATP-bindi 92.9 0.043 1.5E-06 53.8 2.6 27 247-273 32-58 (275)
342 2zej_A Dardarin, leucine-rich 92.9 0.043 1.5E-06 49.3 2.4 22 251-272 4-25 (184)
343 1nrj_B SR-beta, signal recogni 92.9 0.055 1.9E-06 49.8 3.2 24 250-273 13-36 (218)
344 1vpl_A ABC transporter, ATP-bi 92.8 0.049 1.7E-06 52.8 2.9 27 247-273 39-65 (256)
345 4g1u_C Hemin import ATP-bindin 92.8 0.043 1.5E-06 53.4 2.5 27 247-273 35-61 (266)
346 2gza_A Type IV secretion syste 92.8 0.036 1.2E-06 56.4 2.0 70 248-317 174-261 (361)
347 2yz2_A Putative ABC transporte 92.8 0.049 1.7E-06 53.0 2.8 27 247-273 31-57 (266)
348 2wji_A Ferrous iron transport 92.7 0.05 1.7E-06 48.0 2.6 23 250-272 4-26 (165)
349 1lw7_A Transcriptional regulat 92.7 0.062 2.1E-06 54.4 3.6 27 250-276 171-197 (365)
350 4edh_A DTMP kinase, thymidylat 92.7 0.059 2E-06 50.7 3.2 25 250-274 7-31 (213)
351 3dkp_A Probable ATP-dependent 92.7 0.18 6.2E-06 47.4 6.6 17 250-266 67-83 (245)
352 4i1u_A Dephospho-COA kinase; s 92.7 0.065 2.2E-06 50.5 3.4 31 251-282 11-41 (210)
353 2ihy_A ABC transporter, ATP-bi 92.6 0.049 1.7E-06 53.5 2.6 27 247-273 45-71 (279)
354 2nq2_C Hypothetical ABC transp 92.6 0.048 1.7E-06 52.6 2.5 27 247-273 29-55 (253)
355 1z2a_A RAS-related protein RAB 92.6 0.057 2E-06 46.9 2.8 23 250-272 6-28 (168)
356 4a1f_A DNAB helicase, replicat 92.6 0.087 3E-06 53.2 4.4 36 247-282 44-82 (338)
357 1kao_A RAP2A; GTP-binding prot 92.6 0.062 2.1E-06 46.4 3.0 23 250-272 4-26 (167)
358 3vkw_A Replicase large subunit 92.6 0.03 1E-06 58.6 1.1 23 250-272 162-184 (446)
359 2nzj_A GTP-binding protein REM 92.5 0.056 1.9E-06 47.4 2.6 23 250-272 5-27 (175)
360 2wsm_A Hydrogenase expression/ 92.5 0.072 2.5E-06 49.2 3.5 25 250-274 31-55 (221)
361 3v9p_A DTMP kinase, thymidylat 92.5 0.05 1.7E-06 51.8 2.4 26 250-275 26-51 (227)
362 3fvq_A Fe(3+) IONS import ATP- 92.5 0.055 1.9E-06 55.2 2.8 27 247-273 28-54 (359)
363 4f4c_A Multidrug resistance pr 92.4 0.094 3.2E-06 62.3 5.1 28 246-273 441-468 (1321)
364 3sop_A Neuronal-specific septi 92.4 0.053 1.8E-06 52.9 2.6 23 251-273 4-26 (270)
365 2lkc_A Translation initiation 92.4 0.08 2.8E-06 46.6 3.5 24 249-272 8-31 (178)
366 1u8z_A RAS-related protein RAL 92.4 0.067 2.3E-06 46.3 2.9 23 250-272 5-27 (168)
367 2o8b_B DNA mismatch repair pro 92.3 0.16 5.5E-06 58.7 6.7 21 250-270 790-810 (1022)
368 2f1r_A Molybdopterin-guanine d 92.3 0.042 1.5E-06 49.9 1.6 25 250-274 3-27 (171)
369 2ce2_X GTPase HRAS; signaling 92.3 0.059 2E-06 46.4 2.5 22 251-272 5-26 (166)
370 2it1_A 362AA long hypothetical 92.3 0.065 2.2E-06 54.7 3.1 27 247-273 27-53 (362)
371 3d31_A Sulfate/molybdate ABC t 92.3 0.058 2E-06 54.7 2.7 27 247-273 24-50 (348)
372 1z0j_A RAB-22, RAS-related pro 92.3 0.07 2.4E-06 46.4 2.9 24 250-273 7-30 (170)
373 3tmk_A Thymidylate kinase; pho 92.3 0.093 3.2E-06 49.5 3.9 27 250-276 6-32 (216)
374 2yyz_A Sugar ABC transporter, 92.3 0.065 2.2E-06 54.6 3.0 27 247-273 27-53 (359)
375 3iby_A Ferrous iron transport 92.2 0.15 5.1E-06 49.1 5.4 23 250-272 2-24 (256)
376 3lv8_A DTMP kinase, thymidylat 92.2 0.066 2.3E-06 51.3 2.9 25 250-274 28-52 (236)
377 2p67_A LAO/AO transport system 92.2 0.21 7.1E-06 50.2 6.7 24 250-273 57-80 (341)
378 1ek0_A Protein (GTP-binding pr 92.2 0.066 2.3E-06 46.5 2.7 23 250-272 4-26 (170)
379 2erx_A GTP-binding protein DI- 92.2 0.069 2.3E-06 46.5 2.8 23 250-272 4-26 (172)
380 1z47_A CYSA, putative ABC-tran 92.2 0.062 2.1E-06 54.7 2.8 26 248-273 40-65 (355)
381 3rlf_A Maltose/maltodextrin im 92.2 0.068 2.3E-06 54.9 3.1 27 247-273 27-53 (381)
382 2wjg_A FEOB, ferrous iron tran 92.2 0.067 2.3E-06 47.7 2.7 23 250-272 8-30 (188)
383 1v43_A Sugar-binding transport 92.2 0.069 2.3E-06 54.7 3.1 27 247-273 35-61 (372)
384 1wms_A RAB-9, RAB9, RAS-relate 92.1 0.074 2.5E-06 46.7 3.0 23 250-272 8-30 (177)
385 3bgw_A DNAB-like replicative h 92.1 0.098 3.4E-06 54.8 4.3 38 246-283 194-234 (444)
386 1w36_D RECD, exodeoxyribonucle 92.1 0.069 2.4E-06 58.2 3.2 24 250-273 165-188 (608)
387 3q85_A GTP-binding protein REM 92.0 0.069 2.4E-06 46.6 2.6 21 251-271 4-24 (169)
388 1z08_A RAS-related protein RAB 92.0 0.074 2.5E-06 46.3 2.8 23 250-272 7-29 (170)
389 1ky3_A GTP-binding protein YPT 92.0 0.078 2.7E-06 46.7 3.0 23 250-272 9-31 (182)
390 1upt_A ARL1, ADP-ribosylation 92.0 0.091 3.1E-06 45.8 3.3 22 250-271 8-29 (171)
391 1nij_A Hypothetical protein YJ 92.0 0.14 4.7E-06 51.0 5.0 24 250-273 5-28 (318)
392 1pui_A ENGB, probable GTP-bind 92.0 0.043 1.5E-06 50.2 1.2 25 249-273 26-50 (210)
393 3q72_A GTP-binding protein RAD 92.0 0.055 1.9E-06 47.1 1.9 22 251-272 4-25 (166)
394 2hxs_A RAB-26, RAS-related pro 92.0 0.082 2.8E-06 46.5 3.0 23 250-272 7-29 (178)
395 2gj8_A MNME, tRNA modification 91.9 0.072 2.5E-06 47.4 2.7 23 250-272 5-27 (172)
396 1g29_1 MALK, maltose transport 91.9 0.069 2.4E-06 54.6 2.8 27 247-273 27-53 (372)
397 1g16_A RAS-related protein SEC 91.9 0.07 2.4E-06 46.4 2.5 23 250-272 4-26 (170)
398 1c1y_A RAS-related protein RAP 91.9 0.079 2.7E-06 45.9 2.8 23 250-272 4-26 (167)
399 1r2q_A RAS-related protein RAB 91.8 0.08 2.7E-06 45.9 2.8 22 250-271 7-28 (170)
400 3nh6_A ATP-binding cassette SU 91.8 0.066 2.3E-06 53.3 2.4 28 246-273 77-104 (306)
401 3bc1_A RAS-related protein RAB 91.8 0.084 2.9E-06 46.9 2.9 22 250-271 12-33 (195)
402 2j0s_A ATP-dependent RNA helic 91.7 0.22 7.4E-06 50.4 6.3 19 250-268 75-93 (410)
403 2wjy_A Regulator of nonsense t 91.7 0.11 3.9E-06 58.4 4.4 24 250-273 372-395 (800)
404 2bbs_A Cystic fibrosis transme 91.7 0.072 2.5E-06 52.6 2.5 28 246-273 61-88 (290)
405 3a1s_A Iron(II) transport prot 91.7 0.21 7.2E-06 48.1 5.9 23 250-272 6-28 (258)
406 1r8s_A ADP-ribosylation factor 91.7 0.084 2.9E-06 45.8 2.8 22 251-272 2-23 (164)
407 2pjz_A Hypothetical protein ST 91.7 0.079 2.7E-06 51.5 2.8 25 249-273 30-54 (263)
408 3ld9_A DTMP kinase, thymidylat 91.7 0.095 3.2E-06 49.8 3.3 26 250-275 22-47 (223)
409 1oxx_K GLCV, glucose, ABC tran 91.7 0.059 2E-06 54.7 1.9 27 247-273 29-55 (353)
410 3tw8_B RAS-related protein RAB 91.6 0.073 2.5E-06 46.8 2.3 23 250-272 10-32 (181)
411 4dsu_A GTPase KRAS, isoform 2B 91.5 0.091 3.1E-06 46.6 2.8 24 250-273 5-28 (189)
412 4f4c_A Multidrug resistance pr 91.4 0.16 5.5E-06 60.3 5.6 28 246-273 1102-1129(1321)
413 3gd7_A Fusion complex of cysti 91.4 0.083 2.9E-06 54.4 2.8 27 247-273 45-71 (390)
414 1z0f_A RAB14, member RAS oncog 91.4 0.093 3.2E-06 46.0 2.8 24 250-273 16-39 (179)
415 2y8e_A RAB-protein 6, GH09086P 91.4 0.085 2.9E-06 46.3 2.5 22 250-271 15-36 (179)
416 3t1o_A Gliding protein MGLA; G 91.4 0.095 3.2E-06 46.8 2.8 24 250-273 15-38 (198)
417 2fn4_A P23, RAS-related protei 91.3 0.098 3.4E-06 46.0 2.8 23 250-272 10-32 (181)
418 4ag6_A VIRB4 ATPase, type IV s 91.3 0.14 4.6E-06 52.3 4.2 34 249-282 35-71 (392)
419 2hf9_A Probable hydrogenase ni 91.3 0.14 4.8E-06 47.3 4.0 24 250-273 39-62 (226)
420 2gks_A Bifunctional SAT/APS ki 91.3 0.11 3.6E-06 56.0 3.6 34 250-283 373-409 (546)
421 1svi_A GTP-binding protein YSX 91.3 0.094 3.2E-06 47.0 2.7 23 250-272 24-46 (195)
422 3con_A GTPase NRAS; structural 91.3 0.097 3.3E-06 46.8 2.8 23 250-272 22-44 (190)
423 2vp4_A Deoxynucleoside kinase; 91.3 0.089 3E-06 49.6 2.6 23 250-272 21-43 (230)
424 2oil_A CATX-8, RAS-related pro 91.3 0.098 3.3E-06 47.0 2.8 23 250-272 26-48 (193)
425 3clv_A RAB5 protein, putative; 91.3 0.12 4E-06 46.2 3.3 23 250-272 8-30 (208)
426 2efe_B Small GTP-binding prote 91.2 0.1 3.4E-06 46.1 2.8 23 250-272 13-35 (181)
427 1m7b_A RND3/RHOE small GTP-bin 91.2 0.089 3E-06 47.0 2.5 23 250-272 8-30 (184)
428 2a9k_A RAS-related protein RAL 91.2 0.1 3.6E-06 46.0 2.9 23 250-272 19-41 (187)
429 3i8s_A Ferrous iron transport 91.2 0.27 9.2E-06 47.7 6.1 23 250-272 4-26 (274)
430 4tmk_A Protein (thymidylate ki 91.2 0.092 3.1E-06 49.4 2.6 25 250-274 4-28 (213)
431 2cxx_A Probable GTP-binding pr 91.1 0.085 2.9E-06 47.0 2.1 22 251-272 3-24 (190)
432 1f2t_A RAD50 ABC-ATPase; DNA d 91.0 0.1 3.5E-06 46.0 2.6 23 251-273 25-47 (149)
433 2db3_A ATP-dependent RNA helic 91.0 0.29 1E-05 50.5 6.5 16 250-265 94-109 (434)
434 4ddu_A Reverse gyrase; topoiso 91.0 0.39 1.3E-05 56.0 8.1 21 249-269 93-113 (1104)
435 2bme_A RAB4A, RAS-related prot 91.0 0.097 3.3E-06 46.5 2.5 23 250-272 11-33 (186)
436 1ksh_A ARF-like protein 2; sma 91.0 0.11 3.8E-06 46.2 2.9 23 250-272 19-41 (186)
437 3fmp_B ATP-dependent RNA helic 90.9 0.25 8.4E-06 51.5 5.9 23 249-271 131-154 (479)
438 2g6b_A RAS-related protein RAB 90.9 0.12 4E-06 45.6 2.9 23 250-272 11-33 (180)
439 1mh1_A RAC1; GTP-binding, GTPa 90.9 0.11 3.8E-06 45.9 2.8 23 250-272 6-28 (186)
440 3fmo_B ATP-dependent RNA helic 90.9 0.41 1.4E-05 47.0 7.1 18 249-266 131-148 (300)
441 3kkq_A RAS-related protein M-R 90.8 0.12 4.3E-06 45.7 3.0 23 250-272 19-41 (183)
442 1ewq_A DNA mismatch repair pro 90.8 0.21 7.2E-06 55.8 5.5 23 250-272 577-599 (765)
443 2gf9_A RAS-related protein RAB 90.7 0.12 4E-06 46.4 2.8 23 250-272 23-45 (189)
444 3pqc_A Probable GTP-binding pr 90.7 0.11 3.9E-06 46.2 2.7 23 250-272 24-46 (195)
445 1yrb_A ATP(GTP)binding protein 90.7 0.19 6.4E-06 47.7 4.3 32 250-281 15-48 (262)
446 3bwd_D RAC-like GTP-binding pr 90.6 0.12 4.2E-06 45.6 2.8 23 250-272 9-31 (182)
447 2iwr_A Centaurin gamma 1; ANK 90.6 0.095 3.3E-06 46.2 2.0 23 250-272 8-30 (178)
448 2bov_A RAla, RAS-related prote 90.6 0.12 4.1E-06 46.7 2.8 23 250-272 15-37 (206)
449 3ihw_A Centg3; RAS, centaurin, 90.6 0.12 4.2E-06 46.4 2.8 22 251-272 22-43 (184)
450 1m2o_B GTP-binding protein SAR 90.6 0.12 4E-06 46.8 2.6 22 250-271 24-45 (190)
451 3c5c_A RAS-like protein 12; GD 90.6 0.12 4.2E-06 46.4 2.8 22 251-272 23-44 (187)
452 3tkl_A RAS-related protein RAB 90.6 0.12 4.2E-06 46.2 2.8 23 250-272 17-39 (196)
453 1zbd_A Rabphilin-3A; G protein 90.6 0.12 4.1E-06 46.8 2.7 23 250-272 9-31 (203)
454 2xzl_A ATP-dependent helicase 90.6 0.17 5.8E-06 57.0 4.4 22 251-272 377-398 (802)
455 1vg8_A RAS-related protein RAB 90.5 0.13 4.5E-06 46.5 3.0 24 250-273 9-32 (207)
456 1dek_A Deoxynucleoside monopho 90.5 0.13 4.3E-06 49.5 2.9 28 251-278 3-30 (241)
457 1moz_A ARL1, ADP-ribosylation 90.5 0.098 3.4E-06 46.3 2.0 22 250-271 19-40 (183)
458 2yv5_A YJEQ protein; hydrolase 90.5 0.16 5.4E-06 50.2 3.7 24 250-274 166-189 (302)
459 3tui_C Methionine import ATP-b 90.4 0.13 4.5E-06 52.5 3.1 27 247-273 52-78 (366)
460 1x3s_A RAS-related protein RAB 90.4 0.13 4.4E-06 46.0 2.8 23 250-272 16-38 (195)
461 1ko7_A HPR kinase/phosphatase; 90.4 0.16 5.4E-06 50.8 3.6 29 249-278 144-172 (314)
462 2atv_A RERG, RAS-like estrogen 90.4 0.15 5E-06 46.1 3.1 23 250-272 29-51 (196)
463 1fzq_A ADP-ribosylation factor 90.4 0.12 4E-06 46.3 2.4 23 250-272 17-39 (181)
464 3eiq_A Eukaryotic initiation f 90.3 0.51 1.8E-05 47.4 7.5 18 250-267 78-95 (414)
465 2npi_A Protein CLP1; CLP1-PCF1 90.3 0.13 4.4E-06 54.1 3.1 25 249-273 138-162 (460)
466 1zd9_A ADP-ribosylation factor 90.3 0.13 4.6E-06 46.1 2.8 23 250-272 23-45 (188)
467 1z06_A RAS-related protein RAB 90.3 0.14 4.7E-06 45.9 2.8 22 250-271 21-42 (189)
468 3dz8_A RAS-related protein RAB 90.3 0.12 4.2E-06 46.4 2.5 24 250-273 24-47 (191)
469 3reg_A RHO-like small GTPase; 90.3 0.14 4.6E-06 46.2 2.8 23 250-272 24-46 (194)
470 4bas_A ADP-ribosylation factor 90.3 0.12 4.1E-06 46.4 2.4 23 250-272 18-40 (199)
471 3t5g_A GTP-binding protein RHE 90.3 0.12 4.3E-06 45.6 2.5 22 250-271 7-28 (181)
472 2fg5_A RAB-22B, RAS-related pr 90.2 0.13 4.3E-06 46.4 2.5 23 250-272 24-46 (192)
473 2a5j_A RAS-related protein RAB 90.2 0.14 4.7E-06 46.0 2.8 23 250-272 22-44 (191)
474 3lxx_A GTPase IMAP family memb 90.2 0.14 4.8E-06 48.2 2.9 24 250-273 30-53 (239)
475 1tf7_A KAIC; homohexamer, hexa 90.2 0.11 3.8E-06 55.3 2.4 22 248-269 38-59 (525)
476 2p5s_A RAS and EF-hand domain 90.2 0.14 4.8E-06 46.4 2.8 23 250-272 29-51 (199)
477 3tbk_A RIG-I helicase domain; 90.1 0.44 1.5E-05 49.9 7.0 23 250-272 20-42 (555)
478 2gf0_A GTP-binding protein DI- 90.1 0.16 5.3E-06 45.6 3.0 22 250-271 9-30 (199)
479 2bcg_Y Protein YP2, GTP-bindin 90.0 0.13 4.5E-06 46.7 2.5 23 250-272 9-31 (206)
480 3cph_A RAS-related protein SEC 90.0 0.15 5E-06 46.5 2.8 23 250-272 21-43 (213)
481 1knx_A Probable HPR(Ser) kinas 89.9 0.14 4.7E-06 51.2 2.7 29 248-277 146-174 (312)
482 1zj6_A ADP-ribosylation factor 89.9 0.16 5.4E-06 45.4 2.9 22 250-271 17-38 (187)
483 2qag_B Septin-6, protein NEDD5 89.8 0.15 5.1E-06 53.1 3.0 21 252-272 45-65 (427)
484 3oes_A GTPase rhebl1; small GT 89.8 0.14 4.8E-06 46.5 2.5 24 250-273 25-48 (201)
485 3hjn_A DTMP kinase, thymidylat 89.8 0.22 7.4E-06 46.0 3.8 29 252-280 3-34 (197)
486 1tq4_A IIGP1, interferon-induc 89.8 0.17 5.7E-06 52.5 3.3 22 251-272 71-92 (413)
487 2dpy_A FLII, flagellum-specifi 89.8 0.2 6.7E-06 52.4 3.9 25 250-274 158-182 (438)
488 1f6b_A SAR1; gtpases, N-termin 89.8 0.11 3.9E-06 47.3 1.8 22 250-271 26-47 (198)
489 2obl_A ESCN; ATPase, hydrolase 89.7 0.18 6.1E-06 51.0 3.4 26 250-275 72-97 (347)
490 2fu5_C RAS-related protein RAB 89.7 0.1 3.5E-06 46.3 1.4 23 250-272 9-31 (183)
491 2cjw_A GTP-binding protein GEM 89.7 0.16 5.4E-06 46.1 2.8 22 250-271 7-28 (192)
492 1gwn_A RHO-related GTP-binding 89.7 0.14 4.9E-06 47.0 2.5 23 250-272 29-51 (205)
493 2rcn_A Probable GTPase ENGC; Y 89.7 0.16 5.4E-06 51.7 2.9 25 250-274 216-240 (358)
494 2www_A Methylmalonic aciduria 89.7 0.18 6.1E-06 51.0 3.3 24 250-273 75-98 (349)
495 3cbq_A GTP-binding protein REM 89.6 0.14 4.7E-06 46.6 2.2 22 250-271 24-45 (195)
496 2fh5_B SR-beta, signal recogni 89.5 0.17 6E-06 46.2 2.9 23 250-272 8-30 (214)
497 2qtf_A Protein HFLX, GTP-bindi 89.5 0.35 1.2E-05 49.1 5.4 23 251-273 181-203 (364)
498 2ew1_A RAS-related protein RAB 89.5 0.15 5.2E-06 46.8 2.5 23 250-272 27-49 (201)
499 2q3h_A RAS homolog gene family 89.5 0.16 5.4E-06 45.9 2.6 23 250-272 21-43 (201)
500 1qhl_A Protein (cell division 89.5 0.074 2.5E-06 50.6 0.3 23 251-273 29-51 (227)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-46 Score=388.17 Aligned_cols=256 Identities=34% Similarity=0.553 Sum_probs=232.6
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
+....+.|+++|+||+|++++|+.|++.+.+|+++|+.|... +.+++|+|||||||||||++|+++|++++.+|+.+++
T Consensus 136 ~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 136 LMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp SCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 455678899999999999999999999999999999999875 8889999999999999999999999999999999999
Q ss_pred ccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975 283 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 361 (496)
Q Consensus 283 s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT 361 (496)
+++.++|+|++++.++.+|..|+..+||||||||+|.+++.+.... ......++++++||..||++... ..|+||+||
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vIaAT 294 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKIIMAT 294 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEEEEE
T ss_pred HHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEEecc
Confidence 9999999999999999999999999999999999999998875433 23345567889999999998754 458899999
Q ss_pred CCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975 362 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 439 (496)
Q Consensus 362 n~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~ 439 (496)
|+|+.||++++| ||++.|++++|+.++|.+||+.++++.....+++++.+|+.|+||||+||..+|++|++.++++
T Consensus 295 Nrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~-- 372 (405)
T 4b4t_J 295 NRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE-- 372 (405)
T ss_dssp SCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT--
T ss_pred CChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc--
Confidence 999999999999 9999999999999999999999999988888899999999999999999999999999999874
Q ss_pred HHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc
Q 010975 440 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 478 (496)
Q Consensus 440 ~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~ 478 (496)
+ ...||++||+.|++++.+...+
T Consensus 373 ----~------------~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 ----R------------RIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp ----T------------CSBCCHHHHHHHHHHHHHHHTC
T ss_pred ----C------------CCCcCHHHHHHHHHHHhCcccc
Confidence 1 1248999999999998776544
No 2
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.3e-45 Score=406.88 Aligned_cols=288 Identities=34% Similarity=0.614 Sum_probs=198.2
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 283 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s 283 (496)
+.....|+++|+|++|++++|+.|.+.+.+|+++++.|... ..+++++|||||||||||++|+++|.+++.+|+.++++
T Consensus 466 ~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~ 545 (806)
T 3cf2_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHH
T ss_pred cccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccc
Confidence 33445789999999999999999999999999999999876 78899999999999999999999999999999999999
Q ss_pred cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC-cchhHHhhhhhhhhhhhccCccccCcEEEEEeccC
Q 010975 284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 362 (496)
Q Consensus 284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn 362 (496)
++.++|+|++++.++.+|+.|+...||||||||||.+++.|+.. ...+...++++++||..||++.... .|+||+|||
T Consensus 546 ~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~-~V~vi~aTN 624 (806)
T 3cf2_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK-NVFIIGATN 624 (806)
T ss_dssp HHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS-SEEEECC-C
T ss_pred hhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC-CEEEEEeCC
Confidence 99999999999999999999999999999999999999887643 3345677899999999999997654 589999999
Q ss_pred CcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHH
Q 010975 363 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 440 (496)
Q Consensus 363 ~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~ 440 (496)
+|+.||++++| ||++.+++++|+.++|.+||+.++++.....+++++.+|+.|+||||+||..+|++|++.++|+.+.
T Consensus 625 ~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp CSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC
T ss_pred CchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999988888899999999999999999999999999999998764
Q ss_pred Hhhcccc---C----CCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccccccc
Q 010975 441 LLEGRQE---V----APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 493 (496)
Q Consensus 441 ~le~~~~---i----~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~ 493 (496)
....... . ..........+||++||++|+++++||.++ ++.+|++|.+.|+..
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 705 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp -----------------------CCC----CCTTTC---------------CCCC------
T ss_pred hhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 3211110 0 000111123569999999999999999986 589999999988753
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-44 Score=380.92 Aligned_cols=262 Identities=33% Similarity=0.560 Sum_probs=229.7
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
+++.|+++|+||+|++++|+.|++.+.+|+.+|+.|... +.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 457899999999999999999999999999999999875 7899999999999999999999999999999999999999
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
.++|+|++++.++.+|..|+..+||||||||+|.++..|.... .......+++.++|..||+..... .|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG-NIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT-TEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC-cEEEEeCCCCc
Confidence 9999999999999999999999999999999999998876433 333445667788999999886554 48899999999
Q ss_pred ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975 365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
+.||++++| ||++.|+|++|+.++|.+||+.+++......+++++.+|+.|+||||+||+.+|++|++.++++-
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999888888999999999999999999999999999998851
Q ss_pred hccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc--hhhhhhhhc
Q 010975 443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL--HAHRYEKFN 487 (496)
Q Consensus 443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~--~~~~~~~~~ 487 (496)
+ ..||++||..|++++.+.... ...+|.+|+
T Consensus 435 --~------------~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 --R------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp --C------------SSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred --C------------CccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 1 238999999999998776543 357788886
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-44 Score=379.66 Aligned_cols=258 Identities=33% Similarity=0.547 Sum_probs=233.1
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 284 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~ 284 (496)
...+.|+++|+||+|++++|+.|.+.+.+|+.+|+.|... +++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 3456799999999999999999999999999999999875 788999999999999999999999999999999999999
Q ss_pred ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch-hHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975 285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNL 363 (496)
Q Consensus 285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~ 363 (496)
+.++|+|++++.++.+|..|+..+||||||||+|.+++.|...... .....+++.+||..||++.... .|+||+|||+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~-~ViVIaaTNr 329 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD-RVKVLAATNR 329 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC-SSEEEEECSS
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC-CEEEEEeCCC
Confidence 9999999999999999999999999999999999999887654332 2344567789999999987654 4889999999
Q ss_pred cccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975 364 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 441 (496)
Q Consensus 364 p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~ 441 (496)
|+.||++++| ||++.|++++|+.++|.+||+.++++.....+++++.+|+.|+||||+||..+|++|++.++++-
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~--- 406 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG--- 406 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT---
T ss_pred chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999988 99999999999999999999999998888888899999999999999999999999999998751
Q ss_pred hhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchhhh
Q 010975 442 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHR 482 (496)
Q Consensus 442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~~~ 482 (496)
...||++||..|+++++|+....+.-
T Consensus 407 ---------------~~~i~~~Df~~Al~~v~~~~~~~i~~ 432 (434)
T 4b4t_M 407 ---------------QSSVKHEDFVEGISEVQARKSKSVSF 432 (434)
T ss_dssp ---------------CSSBCHHHHHHHHHSCSSSCCCCCCC
T ss_pred ---------------CCCcCHHHHHHHHHHHhCCCCcCccc
Confidence 12489999999999999998765543
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-44 Score=376.52 Aligned_cols=253 Identities=34% Similarity=0.537 Sum_probs=229.4
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
..+.|+++|+||+|++++|+.|.+.+.+|+.+|++|... +.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 456799999999999999999999999999999999876 7888999999999999999999999999999999999999
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
.++|+|++++.++.+|..|+..+||||||||+|.+++.|..... ......+++.+||..+|+..... .|+||+|||+|
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~-~ViVIaATNrp 331 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG-DVKVIMATNKI 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS-SEEEEEEESCS
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC-CEEEEEeCCCh
Confidence 99999999999999999999999999999999999988754332 22344567789999999886554 48899999999
Q ss_pred ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975 365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
+.||+|++| ||++.|+|++|+.++|.+||+.++++.....+++++.+|+.|+||||+||+.+|++|++.++++-
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~---- 407 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER---- 407 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999888888999999999999999999999999999988741
Q ss_pred hccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc
Q 010975 443 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 478 (496)
Q Consensus 443 e~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~ 478 (496)
...||++||..|++++.|+..+
T Consensus 408 --------------~~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 408 --------------RMQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp --------------CSCBCHHHHHHHHHHHHHHHCC
T ss_pred --------------CCccCHHHHHHHHHHHhCCCCh
Confidence 1248999999999999887654
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-44 Score=375.65 Aligned_cols=254 Identities=34% Similarity=0.595 Sum_probs=228.9
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 283 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s 283 (496)
....+.|+++|+||+|++++|+.|.+.+.+|+.+|+.|... +.+++|+|||||||||||++|+++|++++.+|+.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 34456799999999999999999999999999999999876 88899999999999999999999999999999999999
Q ss_pred cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccC
Q 010975 284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATN 362 (496)
Q Consensus 284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn 362 (496)
++.++|.|++++.++.+|..|+..+||||||||+|.+++.|..... ......+++.+||..||++.... .|+||+|||
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~vivI~ATN 328 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG-QTKIIMATN 328 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT-SSEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC-CeEEEEecC
Confidence 9999999999999999999999999999999999999988754332 23345667889999999987654 478999999
Q ss_pred CcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHH
Q 010975 363 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 440 (496)
Q Consensus 363 ~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~ 440 (496)
+|+.||++++| ||++.|+|++|+.++|.+||+.++.+.....+.+++.+|+.|+||||+||..+|++|++.++++
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~--- 405 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD--- 405 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT---
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---
Confidence 99999999998 6999999999999999999999999888888889999999999999999999999999998874
Q ss_pred HhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975 441 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 477 (496)
Q Consensus 441 ~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~ 477 (496)
++ ..||++||..|++++.|+..
T Consensus 406 ---~~------------~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 406 ---DR------------DHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp ---TC------------SSBCHHHHHHHHHHHHHTCC
T ss_pred ---CC------------CCCCHHHHHHHHHHHHhccC
Confidence 11 24899999999999988754
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-43 Score=367.66 Aligned_cols=253 Identities=36% Similarity=0.605 Sum_probs=227.7
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
..+.|+++|+||+|++++|+.|.+.+.+|+.+|++|... +.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 456799999999999999999999999999999999875 8889999999999999999999999999999999999999
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
.++|.|++++.++.+|..|+..+||||||||+|.+++.|..... .....++++++||..||++.... .|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~-~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST-NVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC-SEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC-CEEEEEecCCh
Confidence 99999999999999999999999999999999999998754332 23345678899999999987654 48899999999
Q ss_pred ccccHHHHH--Hhhhhhccc-CCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHH
Q 010975 365 WELDAAMLR--RLEKRILVP-LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 441 (496)
Q Consensus 365 ~~Ld~aL~r--Rf~~~I~~~-~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~ 441 (496)
+.||++++| ||++.|++| +|+.++|..||+.++++.....+.+++.+|..|+||||+||..+|++|++.++++-
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
Confidence 999999999 999999996 89999999999999998888888999999999999999999999999999998751
Q ss_pred hhccccCCCCCCCCCCCCCCchhHHHHhhc-CCCCccc
Q 010975 442 LEGRQEVAPDDELPQIGPIRPEDVEIALKN-TRPSAHL 478 (496)
Q Consensus 442 le~~~~i~~~~~~~~~~~It~eDf~~Al~~-~~Ps~~~ 478 (496)
+ ..|+++||++|+.. ++++.+.
T Consensus 399 ---~------------~~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 399 ---R------------YVILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp ---C------------SSBCHHHHHHHHHHHSCSCCCS
T ss_pred ---C------------CCCCHHHHHHHHHHhhCccCCc
Confidence 1 24899999999976 5666553
No 8
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.3e-42 Score=348.73 Aligned_cols=285 Identities=47% Similarity=0.813 Sum_probs=245.2
Q ss_pred hCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-cceeeeeeccccc
Q 010975 208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVV 286 (496)
Q Consensus 208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~~s~l~ 286 (496)
.+.|+++|+||+|++++|+.|.+.+.+|+++++.+.....+++++||+||||||||++|+++|+++ +.+++.++++++.
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 456889999999999999999999999999999998777788999999999999999999999999 8999999999999
Q ss_pred ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccc
Q 010975 287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 366 (496)
Q Consensus 287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~ 366 (496)
+.+.|..++.++.+|..++..+|+||||||+|.+.+.++.. .....+++.++++..++++......++||++||.|+.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 161 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCccc
Confidence 99999999999999999999999999999999998876543 3445678889999999988665667899999999999
Q ss_pred ccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975 367 LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445 (496)
Q Consensus 367 Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~ 445 (496)
+|++++|||+..+.+++|+.++|.+|++.++...... .+.+++.+++.+.||+++||..+|++|++.++++......-.
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~ 241 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 241 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999998876553 455678899999999999999999999999999876431100
Q ss_pred -----cc------------C-CCC-------------CCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccccccc
Q 010975 446 -----QE------------V-APD-------------DELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 493 (496)
Q Consensus 446 -----~~------------i-~~~-------------~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~ 493 (496)
.. . .+. .......+||++||..|++.++||.+. ++..|++|++.||++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 321 (322)
T 1xwi_A 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQE 321 (322)
T ss_dssp EEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCSC
T ss_pred hhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccC
Confidence 00 0 000 000012479999999999999999986 589999999999986
Q ss_pred c
Q 010975 494 I 494 (496)
Q Consensus 494 ~ 494 (496)
.
T Consensus 322 ~ 322 (322)
T 1xwi_A 322 G 322 (322)
T ss_dssp C
T ss_pred C
Confidence 3
No 9
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.1e-41 Score=346.26 Aligned_cols=289 Identities=48% Similarity=0.794 Sum_probs=245.3
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 283 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s 283 (496)
..+..+.|+++|++++|++++|+.|.+.+..++.+++.+.....+++++||+||||||||++|+++|++++.+++.++++
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 34566789999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975 284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 363 (496)
Q Consensus 284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~ 363 (496)
++.+.+.|..+..++.+|..++..+|+||||||+|.+.+.+... .....+++.++++..+++.......++||+|||.
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 99999999999999999999999999999999999998765432 3345577888999999988666677999999999
Q ss_pred cccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975 364 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 364 p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
++.+|++++|||+..+.+++|+.++|.+|++.++...... .+.+++.+++.++||+++||..+|++|++.++++..+..
T Consensus 164 ~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~ 243 (322)
T 3eie_A 164 PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 243 (322)
T ss_dssp GGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCE
T ss_pred hhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999876654 455678899999999999999999999999999987643
Q ss_pred hccccC------------CC-------------CCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccccc
Q 010975 443 EGRQEV------------AP-------------DDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 494 (496)
Q Consensus 443 e~~~~i------------~~-------------~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~~ 494 (496)
...... .+ ........+||++||..|++.++|+++. ++.+|++|++.||++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~~ 321 (322)
T 3eie_A 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 321 (322)
T ss_dssp EEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC---
T ss_pred hhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 211100 00 0011123579999999999999999886 5899999999999864
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=8.7e-41 Score=344.71 Aligned_cols=296 Identities=48% Similarity=0.783 Sum_probs=232.2
Q ss_pred HHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975 197 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 276 (496)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~ 276 (496)
.+.+.+...+....|+++|+||+|++++++.|.+.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 32 KLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp ---------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred HHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 33444556666778999999999999999999999999999999988877888999999999999999999999999999
Q ss_pred eeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975 277 FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 356 (496)
Q Consensus 277 ~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 356 (496)
++.++++++.+.+.|..+..++.+|..+....|+||||||+|.+.+.+... .....+++.++|+..++++......++
T Consensus 112 ~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 112 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp EEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred EEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeE
Confidence 999999999999999999999999999998899999999999998765433 344567788999999998766566799
Q ss_pred EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975 357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 435 (496)
Q Consensus 357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~ 435 (496)
||++||.++.++++++|||+..+.+++|+.++|.+|++.++...... .+.+++.+++.+.||+++||..+|++|++.++
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876543 45567889999999999999999999999999
Q ss_pred HHHHHHhhcccc------------CCCC-------------CCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccc
Q 010975 436 RRLMVLLEGRQE------------VAPD-------------DELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNAD 489 (496)
Q Consensus 436 rR~~~~le~~~~------------i~~~-------------~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~ 489 (496)
++......-... ..+. .......+||++||..|++.++||++. ++..|++|.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~ 349 (355)
T 2qp9_X 270 RKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRD 349 (355)
T ss_dssp HHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 987643110000 0000 000123569999999999999999986 58999999999
Q ss_pred ccccc
Q 010975 490 YGSEI 494 (496)
Q Consensus 490 ~g~~~ 494 (496)
||++.
T Consensus 350 ~~~~~ 354 (355)
T 2qp9_X 350 FGQEG 354 (355)
T ss_dssp TC---
T ss_pred hccCC
Confidence 99874
No 11
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=7.5e-40 Score=347.40 Aligned_cols=293 Identities=47% Similarity=0.798 Sum_probs=237.7
Q ss_pred HHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-ccee
Q 010975 199 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTF 277 (496)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-~~~~ 277 (496)
.+.+...+....|+++|+||+|++.+++.|.+.+.+|+.+++.+.....+++++||+||||||||++|+++|+++ +.++
T Consensus 117 ~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~ 196 (444)
T 2zan_A 117 QNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF 196 (444)
T ss_dssp -------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE
T ss_pred HHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE
Confidence 334455667788999999999999999999999999999999988767778999999999999999999999999 8999
Q ss_pred eeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975 278 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 357 (496)
Q Consensus 278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 357 (496)
+.++++++.+.+.|..+..++.+|..+....|+||||||||.+.+.+... .....+++.++|+..++++......++|
T Consensus 197 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 197 FSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp EEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred EEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 99999999999999999999999999999999999999999998765543 3445678889999999988655667899
Q ss_pred EeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHH
Q 010975 358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 436 (496)
Q Consensus 358 IatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~r 436 (496)
|+|||.++.++++++|||+..+.+++|+.++|..|++.++...... .+.+++.+++.++||+++||..+|++|++.+++
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r 354 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998776543 455678899999999999999999999999999
Q ss_pred HHHHHh--hccccC------------------------------CCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhh
Q 010975 437 RLMVLL--EGRQEV------------------------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRY 483 (496)
Q Consensus 437 R~~~~l--e~~~~i------------------------------~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~ 483 (496)
+..... ...... .+.+. ....+||++||..|++.++||.+. ++..|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~a~~~~~ps~~~~~~~~~ 433 (444)
T 2zan_A 355 KVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMWDMLRSLSSTKPTVNEQDLLKL 433 (444)
T ss_dssp HHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTC-BCCCCEEHHHHHHHHHTCCCSCCHHHHHHH
T ss_pred HHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhh-ccCCccCHHHHHHHHHhCCCCCCHHHHHHH
Confidence 876531 000000 00000 113479999999999999999986 58999
Q ss_pred hhhcccccccc
Q 010975 484 EKFNADYGSEI 494 (496)
Q Consensus 484 ~~~~~~~g~~~ 494 (496)
++|++.||++.
T Consensus 434 ~~~~~~~~~~~ 444 (444)
T 2zan_A 434 KKFTEDFGQEG 444 (444)
T ss_dssp HHHTSSCTTTC
T ss_pred HHHHHHHcCCC
Confidence 99999999863
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.7e-40 Score=366.33 Aligned_cols=280 Identities=33% Similarity=0.525 Sum_probs=243.1
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
..|.++|+||+|++++|+.|++.+..|+++|+.|..+ ..+++|||||||||||||++|+++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 4578999999999999999999999999999999886 789999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975 288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 367 (496)
Q Consensus 288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L 367 (496)
+|.|+++..++.+|+.|+.++|+||||||+|.+++.+.... .+..++++++|+..|+++..+. .|+||++||+++.+
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~~-~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGGG-CEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccccC-CEEEEEecCChhhc
Confidence 99999999999999999999999999999999998876543 3445788999999999986654 58899999999999
Q ss_pred cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975 368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445 (496)
Q Consensus 368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~ 445 (496)
|++++| ||++.|+++.|+.++|.+||+.+++......++++..+|..|.||+++||..+|++|++.+++|........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999 999999999999999999999999998888899999999999999999999999999999999987655433
Q ss_pred ccCCCCCCCCCCCCCCchhHHHHhhcCCCCccchh---hhhhhhcccccc
Q 010975 446 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYGS 492 (496)
Q Consensus 446 ~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~---~~~~~~~~~~g~ 492 (496)
......+. .....++++||..|++.++|+...+. ..-..|....|.
T Consensus 434 ~~~~~~e~-~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl 482 (806)
T 3cf2_A 434 DETIDAEV-MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGL 482 (806)
T ss_dssp CCCCSHHH-HHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSC
T ss_pred ccccchhh-hccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCH
Confidence 22111111 11235899999999999999976532 233455555443
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=8e-39 Score=322.46 Aligned_cols=286 Identities=34% Similarity=0.621 Sum_probs=239.9
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
|+.....|+++|+|++|++++++.|.+.+..++.+++.+... +.+++++||+||||||||++|+++|++++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 566677899999999999999999999999999999888765 6778899999999999999999999999999999999
Q ss_pred ccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975 283 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAAT 361 (496)
Q Consensus 283 s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT 361 (496)
+++.+.+.|..+..++.+|..+....|+||||||+|.+...++.... ......+++.+|+..++++... ..++||+||
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~v~vi~at 161 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT-SSEEEEEEE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC-CCEEEEEec
Confidence 99999999999999999999999999999999999999987653211 1223456678899999877543 458899999
Q ss_pred CCcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHH
Q 010975 362 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 439 (496)
Q Consensus 362 n~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~ 439 (496)
|.++.+|++++| ||+..++++.|+.++|.+|++.++.......+.+++.++..+.||+|+||..+|++|+..++++.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 999999999999999999999999887777778888899999999999999999999999998866
Q ss_pred HHhhccccC-------CCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccc
Q 010975 440 VLLEGRQEV-------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADY 490 (496)
Q Consensus 440 ~~le~~~~i-------~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~ 490 (496)
......... ...+......+|+++||..|++.++|+.+. ++..|++|.+.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 432111000 000001112469999999999999999986 589999999877
No 14
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-37 Score=310.22 Aligned_cols=289 Identities=46% Similarity=0.766 Sum_probs=232.8
Q ss_pred HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 277 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~ 277 (496)
+++.+++++....++.+|++++|++++++.|.+.+..+..+++.+.....+++++||+||||||||++|+++|++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 56677788888999999999999999999999999999999988877767788999999999999999999999999999
Q ss_pred eeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc--CcEE
Q 010975 278 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELV 355 (496)
Q Consensus 278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~--~~~v 355 (496)
+.++++++.+.+.|..+..++.+|..+....|+||||||+|.+...++.. .......+.+.++..+++.... ...+
T Consensus 83 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 83 LNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS--EHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp EEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CE
T ss_pred EEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC--cchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 99999999999999999999999999999899999999999997765432 1223455667788888766432 2458
Q ss_pred EEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccH
Q 010975 356 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 434 (496)
Q Consensus 356 iVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a 434 (496)
+||++||.++.+++++++||+..+.+++|+.++|..|++.++...... .+..++.+++.+.|++++++..++++|+..+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a 240 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP 240 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988765432 2334677899999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccccc
Q 010975 435 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 494 (496)
Q Consensus 435 ~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~~ 494 (496)
+++..+...... ......+||.+||..|++.++|+... .+..|++|.+.||+.-
T Consensus 241 ~r~~~~~~~~~~------~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~ 295 (297)
T 3b9p_A 241 IRELNVEQVKCL------DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDIT 295 (297)
T ss_dssp HHTCC--------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-------
T ss_pred HHHHhhhhcccc------cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCee
Confidence 886433221111 11123469999999999999999876 5799999999999754
No 15
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=318.54 Aligned_cols=288 Identities=43% Similarity=0.757 Sum_probs=238.9
Q ss_pred HHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975 198 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 277 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~ 277 (496)
..+.+.+++....++.+|++++|++.+++.|.+.+..++.+++.+.....+++++||+||||||||++|+++|++++.++
T Consensus 66 ~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 145 (357)
T 3d8b_A 66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF 145 (357)
T ss_dssp HHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 34556678888899999999999999999999999999999998877777789999999999999999999999999999
Q ss_pred eeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc-cCcEEE
Q 010975 278 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVF 356 (496)
Q Consensus 278 i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~vi 356 (496)
+.++++++.+.+.|..+..++.+|..+....|+||||||||.+...+... ......++++.++..+++... ....++
T Consensus 146 ~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 146 FSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp EEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred EEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 99999999999999999999999999998889999999999998765432 234456778888888887653 345688
Q ss_pred EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975 357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 435 (496)
Q Consensus 357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~ 435 (496)
||++||.++.+++++++||...+.++.|+.++|.++++.++...... .+.+++.+++.+.||+++||..+|++|+..++
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~i 303 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999889999999999999999988665433 23456778999999999999999999999998
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccccccc
Q 010975 436 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 493 (496)
Q Consensus 436 rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~ 493 (496)
+++.+..... +.. ....+|+++||..|++.++|+... ++..|++|.+.||+.
T Consensus 304 r~l~~~~~~~--~~~----~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 304 RSLQTADIAT--ITP----DQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp HHCCC----------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred HHhhhhhhcc--ccc----cccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 8643221111 111 123569999999999999999885 589999999999985
No 16
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=313.62 Aligned_cols=286 Identities=43% Similarity=0.706 Sum_probs=228.6
Q ss_pred HHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 201 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 201 ~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.+.+++...+++++|++++|++.+++.|.+.+..+..+++.+.....+++++||+||||||||++|+++|++++.+|+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp TGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 34567778889999999999999999999999999999998887777789999999999999999999999999999999
Q ss_pred ecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc-CcEEEEEe
Q 010975 281 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-DELVFVLA 359 (496)
Q Consensus 281 ~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~-~~~viVIa 359 (496)
+++++.+.+.|..+..++.+|..+....|+||||||||.+...+... ......+++..|+..+++.... ...++||+
T Consensus 180 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 180 SAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257 (389)
T ss_dssp CSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred eHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence 99999999999999999999999999999999999999997665432 2334567778888888876542 45688999
Q ss_pred ccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCC-CCCCcceeeecccCCcCCchhhcchhhhccHHHHH
Q 010975 360 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 438 (496)
Q Consensus 360 tTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~ 438 (496)
|||.++.++++++|||...+.++.|+.++|.+|++.++...... .+..+..+++.+.|+++++|..++++|+..+++++
T Consensus 258 atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 258 ATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp EESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred ecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999889999999999999999998775443 23356778999999999999999999999998874
Q ss_pred HHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhcccccccc
Q 010975 439 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 494 (496)
Q Consensus 439 ~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g~~~ 494 (496)
.+...... .......|+.+||..+++.++|+... .+..|++|.+.||+..
T Consensus 338 ~~~~~~~~------~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~~ 388 (389)
T 3vfd_A 338 KPEQVKNM------SASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTT 388 (389)
T ss_dssp CCC---CC------SSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC---
T ss_pred hhhhhhcc------chhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCcc
Confidence 33222111 11223469999999999999999886 5899999999999864
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=296.43 Aligned_cols=261 Identities=33% Similarity=0.566 Sum_probs=204.7
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
..|+++|+||+|++++|+.|.+.+.++..+++.+... +..++|++|+||||||||++++++|.+++..++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 3578899999999999999999999999999888776 677788999999999999999999999999999999999988
Q ss_pred cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975 288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 367 (496)
Q Consensus 288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L 367 (496)
.+.|+.++.++.+|+.+....|+++|+||+|.+...+... ......++.++++..|++...+ ..++++++||+|+.+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhccccc-CCEEEEeecCChhhC
Confidence 8888889999999999988889999999999986554321 1223356678888999887544 457899999999999
Q ss_pred cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCC---CCCCCCCcceeeecc--cCCcCCchhhcchhhhccHHHHHHH
Q 010975 368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ---TGEESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLMV 440 (496)
Q Consensus 368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~---~~~~~~~l~~la~~t--~g~s~~dI~~l~~~A~~~a~rR~~~ 440 (496)
|++++| ||++.+++++|+.++|.+|++.+++.. ....+.+++.++..+ +||+|+||..+|++|++.++++...
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 999999999999999999999998653 234577788898874 5999999999999999999987543
Q ss_pred HhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccch
Q 010975 441 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 479 (496)
Q Consensus 441 ~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~ 479 (496)
..... .......|+++||++|+++++||.+.+
T Consensus 240 ~~~~~-------~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 240 RQKSG-------NEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------------CCBCHHHHHHHHTTCCCCC---
T ss_pred hcccc-------ccccCCeecHHHHHHHHHHhcCCCChh
Confidence 21100 001123699999999999999998754
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8.9e-34 Score=281.51 Aligned_cols=269 Identities=35% Similarity=0.561 Sum_probs=215.6
Q ss_pred hCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
...|+.+|++++|++++++.|.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 35678899999999999999999999988888877665 56778999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch-hHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975 287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~ 365 (496)
+.+.|..+..++.+|..+....|+||||||+|.+.+.+.+.... .......+..++..+++.... ..++||+|||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCch
Confidence 99999999999999999999999999999999998776543221 222344556667777665443 3588999999999
Q ss_pred cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975 366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443 (496)
Q Consensus 366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le 443 (496)
.+++++++ ||+..+.++.|+.++|.+|++.++.......+.++..++..+.|+++++|+.++++|...++++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~----- 242 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL----- 242 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999988777777888999999999999999999999998877641
Q ss_pred ccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc---hhhhhhhhccccccccc
Q 010975 444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL---HAHRYEKFNADYGSEIL 495 (496)
Q Consensus 444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~---~~~~~~~~~~~~g~~~~ 495 (496)
...||.+||.+|++.+.+.... .-..|..|...||++.+
T Consensus 243 -------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
T 3h4m_A 243 -------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHHH 284 (285)
T ss_dssp -------------CSSBCHHHHHHHHHHHHHHHCCC-------------------
T ss_pred -------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCCC
Confidence 1248999999999998765443 35889999999998754
No 19
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=9.9e-35 Score=328.43 Aligned_cols=284 Identities=35% Similarity=0.622 Sum_probs=216.7
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
....+.++|++++|++++|+.|.+.+.++..+++.+... +.++.++||+||||||||++|+++|.+++.+++.++++++
T Consensus 468 ~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 547 (806)
T 1ypw_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSS
T ss_pred cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHh
Confidence 345688999999999999999999999999998887765 6778899999999999999999999999999999999999
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
.+.|.|+.++.++.+|+.++...|+||||||||.+...++... .......+++++|+..|++.... ..++||+|||.+
T Consensus 548 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~-~~v~vI~tTN~~ 626 (806)
T 1ypw_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNRP 626 (806)
T ss_dssp TTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCCCCBSC
T ss_pred hhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc-CCeEEEEecCCc
Confidence 9999999999999999999999999999999999988765432 23456678899999999987544 458899999999
Q ss_pred ccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHh
Q 010975 365 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 442 (496)
Q Consensus 365 ~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~l 442 (496)
+.+|++++| ||+..+++++|+.++|..|++.+++......+.+++.+++.+.||+++||..+|++|+..++++.+...
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~ 706 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 706 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC----
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999988888888999999999999999999999999999988644321
Q ss_pred hccc-c------CCCCCCCCCCCCCCchhHHHHhhcCCCCccc-hhhhhhhhccccc
Q 010975 443 EGRQ-E------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 491 (496)
Q Consensus 443 e~~~-~------i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~-~~~~~~~~~~~~g 491 (496)
.... . ...........+|+++||+.|++.++|+.+. ++.+|++|.+.|.
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 763 (806)
T ss_dssp --------------------CCTTTTTTSSCCCCCC---------------------
T ss_pred HhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 0000 0 0000011123469999999999999999886 5899999998764
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.98 E-value=3.6e-34 Score=306.84 Aligned_cols=280 Identities=33% Similarity=0.533 Sum_probs=227.9
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 289 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~ 289 (496)
+..+|++++|++.++++|.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+|+.++++++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 56789999999999999999999999999988876 67788999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH
Q 010975 290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 369 (496)
Q Consensus 290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~ 369 (496)
.|+.+..++.+|..+....|++|||||||.+.+.++... .+...+++..|+..+++.... ..++||+|||.++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~--~~~~~~~~~~LL~~ld~~~~~-~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC--CHHHHHHHHHHHHHHHHSCTT-SCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc--chHHHHHHHHHHHHhhccccC-CceEEEEecCCccccCH
Confidence 999999999999999999999999999999988765432 345577889999999876544 45889999999999999
Q ss_pred HHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcccc
Q 010975 370 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 447 (496)
Q Consensus 370 aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~ 447 (496)
++++ ||...+.++.|+.++|.+|++.++.......+.++..++..+.||+++||..++++|+..++++....++....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9998 99999999999999999999999998888878888999999999999999999999999998875433221111
Q ss_pred CCCCCCCCCCCCCCchhHHHHhhcCCCCccchh---hhhhhhcccccccc
Q 010975 448 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYGSEI 494 (496)
Q Consensus 448 i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~~---~~~~~~~~~~g~~~ 494 (496)
.... .......||++||..|++.++|+...+. ..-..|.+..|-+-
T Consensus 436 ~~~~-~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 436 TIDA-EVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp SCCH-HHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred ccch-hhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 1000 0012246999999999999999988653 56688999888553
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=1.6e-31 Score=262.01 Aligned_cols=247 Identities=33% Similarity=0.515 Sum_probs=204.3
Q ss_pred hCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
...++.+|+|++|++++++.+.+.+.. +.+++.+... ...+++++|+||||||||++|+++|++++.+++.++++++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 456788999999999999999987754 4555555443 55678999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc-hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975 287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~ 365 (496)
..+.|..+..++.+|+.+....|+++||||+|.+...++.... ......+..+.++..+++... ...++||++||.++
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPD 161 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEESCTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-CCCEEEEEeeCCch
Confidence 9899999999999999999888999999999999876543211 122234567788888887654 34588999999999
Q ss_pred cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975 366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443 (496)
Q Consensus 366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le 443 (496)
.++++++| ||+..+.++.|+.++|.+|++.++.......+.++..++..+.||+++||..++++|+..+.++-
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~----- 236 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN----- 236 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 99999999999999999999999988776667777788999999999999999999988876531
Q ss_pred ccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975 444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 474 (496)
Q Consensus 444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P 474 (496)
...|+++||.+|++.+..
T Consensus 237 -------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 237 -------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp -------------CSSBCHHHHHHHHHHHTT
T ss_pred -------------CCcccHHHHHHHHHHHhc
Confidence 124899999999988754
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=1.7e-31 Score=261.00 Aligned_cols=247 Identities=34% Similarity=0.521 Sum_probs=189.0
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 289 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~ 289 (496)
|+++|++++|++++|+.|.+.+.. ..+++.+... ...++++||+||||||||++|+++|++++.+++.++++++.+.+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999998765 5556555443 56778999999999999999999999999999999999999888
Q ss_pred cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc--hhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975 290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 367 (496)
Q Consensus 290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L 367 (496)
.+.....++.+|..+....|+||||||+|.+...+..... ........+..++..+++... ...++||+|||.++.+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADIL 158 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC-CCCEEEEecCCChhhc
Confidence 8888899999999999888999999999999876543211 112234455677777776543 3458899999999999
Q ss_pred cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCC--cceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975 368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443 (496)
Q Consensus 368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~--l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le 443 (496)
|+++++ ||+..+.++.|+.++|.+|++.++.........+ ...++..+.|+++++|..++++|+..+.++-
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~----- 233 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG----- 233 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999 9999999999999999999999987766554333 3668899999999999999999998877541
Q ss_pred ccccCCCCCCCCCCCCCCchhHHHHhhcCCCCcc
Q 010975 444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 477 (496)
Q Consensus 444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~ 477 (496)
...|+.+||..|++.+.++..
T Consensus 234 -------------~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 234 -------------HTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp ----------------CCBCCHHHHHHHHHHHHH
T ss_pred -------------CCCCCHHHHHHHHHHhccChh
Confidence 124899999999999877654
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=3.5e-31 Score=282.20 Aligned_cols=246 Identities=37% Similarity=0.567 Sum_probs=205.7
Q ss_pred CCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975 210 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 288 (496)
Q Consensus 210 ~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~ 288 (496)
.+.++|+||+|++++|+.+.+.+.. ...+..+... ...++++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5678899999999999999998765 4455555544 5677899999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975 289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 367 (496)
Q Consensus 289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L 367 (496)
+.|.....++.+|..+....|+||||||+|.+...++... +......+++++|+..++++... ..++||++||.++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK-EGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG-GTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC-CCEEEEEecCChhhh
Confidence 9999999999999999999999999999999977654321 12223356778899999876543 458899999999999
Q ss_pred cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975 368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445 (496)
Q Consensus 368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~ 445 (496)
|++++| ||+..+.++.|+.++|.+|++.+++......+.++..++..+.|++++||..++++|+..+.++-
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~------- 240 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG------- 240 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC-------
Confidence 999988 99999999999999999999999988877777788889999999999999999999988776530
Q ss_pred ccCCCCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975 446 QEVAPDDELPQIGPIRPEDVEIALKNTRPS 475 (496)
Q Consensus 446 ~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps 475 (496)
...|+++||..|+..+.+.
T Consensus 241 -----------~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 241 -----------RDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp -----------CSSBCHHHHHHHHHHHC--
T ss_pred -----------CCeecHHHHHHHHHHHhcC
Confidence 1248999999999988754
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=4.7e-32 Score=266.99 Aligned_cols=252 Identities=34% Similarity=0.533 Sum_probs=205.9
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
+.++.+|++++|++++++.+.+.+.. +.+++.+... ...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 56788899999999999999997764 5556555543 566788999999999999999999999999999999999988
Q ss_pred cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc--chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975 288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~ 365 (496)
.+.|.....++.+|+.+....|+||||||+|.+...+.... .......+++..|+..+++.......++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 88888777788889999888899999999999976543211 1111224566788888887765556688999999999
Q ss_pred cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975 366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443 (496)
Q Consensus 366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le 443 (496)
.+++++++ ||+..+.++.|+.++|.++++.++.......+.+++.+++.+.|++++||+.++++|+..+.++
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~------ 236 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN------ 236 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS------
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998877777777888999999999999999999888765321
Q ss_pred ccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccch
Q 010975 444 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 479 (496)
Q Consensus 444 ~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~~ 479 (496)
....|+.+|+..|+..+.|+....
T Consensus 237 ------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 ------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp ------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred ------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 013489999999999999997753
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=4e-29 Score=244.54 Aligned_cols=246 Identities=36% Similarity=0.577 Sum_probs=195.8
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 283 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s 283 (496)
.+....|+.+|++++|+++++..+.+..... ..+..+... ...++|++|+||||||||+++++++..++.+++.+++.
T Consensus 5 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~ 83 (254)
T 1ixz_A 5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 83 (254)
T ss_dssp ---CCCCSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccCCCCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence 3456778999999999999999999876543 333333333 55667899999999999999999999999999999998
Q ss_pred cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCC-cchhHHhhhhhhhhhhhccCccccCcEEEEEeccC
Q 010975 284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 362 (496)
Q Consensus 284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn 362 (496)
++...+.+.....+..+|+.+....|+++++||+|.+...+... ...........+.++..+++... ...++++++||
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~ 162 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATN 162 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEES
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccC
Confidence 88877777778888899999887788999999999998664321 11122334566788888887654 34578899999
Q ss_pred CcccccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHH
Q 010975 363 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 440 (496)
Q Consensus 363 ~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~ 440 (496)
.|+.+|++++| ||+..+.++.|+.++|.+|++.+++......+.++..++..+.|++++||..++++|+..+.++
T Consensus 163 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~--- 239 (254)
T 1ixz_A 163 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE--- 239 (254)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---
T ss_pred CchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---
Confidence 99999999998 8999999999999999999999987776667777888999999999999999999998776542
Q ss_pred HhhccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975 441 LLEGRQEVAPDDELPQIGPIRPEDVEIALK 470 (496)
Q Consensus 441 ~le~~~~i~~~~~~~~~~~It~eDf~~Al~ 470 (496)
+ ...||++||++|++
T Consensus 240 ---~------------~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 240 ---G------------RRKITMKDLEEAAS 254 (254)
T ss_dssp ---T------------CSSBCHHHHHHHTC
T ss_pred ---c------------CCCcCHHHHHHHhC
Confidence 0 12489999999863
No 26
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=2.3e-29 Score=269.61 Aligned_cols=246 Identities=36% Similarity=0.557 Sum_probs=206.5
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccc
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 289 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~ 289 (496)
++++|+|++|++++|+.+.+.+.. ...+..+... ...+++++|+||||||||+||+++|.+++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 778899999999999999998765 3445555444 56678899999999999999999999999999999999999888
Q ss_pred cCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc
Q 010975 290 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 368 (496)
Q Consensus 290 ~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld 368 (496)
.|.....++.+|+.+....|+|+||||||.+...++... .......+.+++++..|++... ...++++++||.|+.+|
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-~~~viviAatn~p~~LD 183 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILD 183 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-SCCCEEEECCSCGGGSC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-CccEEEEEecCChhhcC
Confidence 888888999999999888899999999999976554211 1223335667888889987754 34578999999999999
Q ss_pred HHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccc
Q 010975 369 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 446 (496)
Q Consensus 369 ~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~ 446 (496)
++++| ||++.+.++.|+.++|.+|++.+++......+.++..++..+.|++++||+.++++|+..+.++
T Consensus 184 ~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~--------- 254 (499)
T 2dhr_A 184 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE--------- 254 (499)
T ss_dssp TTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT---------
T ss_pred cccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---------
Confidence 99998 8999999999999999999999998777777888899999999999999999999998775442
Q ss_pred cCCCCCCCCCCCCCCchhHHHHhhcCCCCc
Q 010975 447 EVAPDDELPQIGPIRPEDVEIALKNTRPSA 476 (496)
Q Consensus 447 ~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~ 476 (496)
....|+++||..|+..+.+..
T Consensus 255 ---------~~~~It~~dl~~al~~v~~~~ 275 (499)
T 2dhr_A 255 ---------GRRKITMKDLEEAADRVMMLP 275 (499)
T ss_dssp ---------CCSSCCSHHHHHHHHHHTTCS
T ss_pred ---------CCCccCHHHHHHHHHHHhccc
Confidence 012489999999999987653
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=9.7e-28 Score=238.26 Aligned_cols=243 Identities=37% Similarity=0.574 Sum_probs=193.4
Q ss_pred hCCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
...|+.+|++++|.+++++.+.+..... ..+..+... ...+++++|+||||||||+++++++..++.+++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 3447888999999999999999877543 233333332 45567899999999999999999999999999999998887
Q ss_pred ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975 287 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 287 ~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~ 365 (496)
..+.+.....+..+|+.+....|+++++||+|.+...+.... ............++..+++... ...++++++||.|+
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPD 189 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCTT
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCch
Confidence 777777778888999998877889999999999976543210 1122234556777888887653 34578899999999
Q ss_pred cccHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhh
Q 010975 366 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 443 (496)
Q Consensus 366 ~Ld~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le 443 (496)
.+|++++| ||+..+.++.|+.++|.+|++.+++......+.++..++..+.|++++||+.++++|+..+.++
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 263 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------ 263 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 8999999999999999999999988776666777888999999999999999999998776542
Q ss_pred ccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975 444 GRQEVAPDDELPQIGPIRPEDVEIALK 470 (496)
Q Consensus 444 ~~~~i~~~~~~~~~~~It~eDf~~Al~ 470 (496)
+ ...||++||++|++
T Consensus 264 ~------------~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 264 G------------RRKITMKDLEEAAS 278 (278)
T ss_dssp T------------CCSBCHHHHHHHTC
T ss_pred C------------CCCcCHHHHHHHhC
Confidence 0 12489999999873
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=1.2e-27 Score=270.68 Aligned_cols=266 Identities=34% Similarity=0.563 Sum_probs=225.4
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccc-cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 287 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~-~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~ 287 (496)
..+.++|+||+|++++++.|.+.+..++.+++.+..+ +.++.++||+||||||||++|+++|.+++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 4567899999999999999999999999999999887 788889999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccc
Q 010975 288 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 367 (496)
Q Consensus 288 ~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~L 367 (496)
.+.|+.+..++.+|..+....|+++||||+|.+...++... .+..+++...++..+++...+. .+++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~--~~~~~~~~~~Ll~ll~g~~~~~-~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC--SHHHHHHHHHHHHHHHSSCTTS-CCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc--chHHHHHHHHHHHHhhhhcccc-cEEEecccCCchhc
Confidence 99999999999999999999999999999999987765432 3445677888999999876554 47789999999999
Q ss_pred cHHHHH--HhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhcc
Q 010975 368 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 445 (496)
Q Consensus 368 d~aL~r--Rf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~ 445 (496)
++++++ ||+..+.++.|+.++|.+|++.++.......+.++..++..+.|++++++..++++|+..++++....++..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 999998 999999999999999999999999888888888899999999999999999999999998887644322111
Q ss_pred ccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc
Q 010975 446 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 478 (496)
Q Consensus 446 ~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~ 478 (496)
...... .......++.+|+..++....|+...
T Consensus 434 ~~~~~~-~~~~~~~v~~~d~~~al~~~~~s~~~ 465 (806)
T 1ypw_A 434 DETIDA-EVMNSLAVTMDDFRWALSQSNPSALR 465 (806)
T ss_dssp HHHCCH-HHHTTCCCCTTHHHHHHHHSCCCCCC
T ss_pred hhccch-hhhhhhhhhhhhhhccccccCchhhh
Confidence 110000 00112458999999999999887654
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=2.7e-26 Score=230.38 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=132.8
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHh----hhcCCcceehhhHHHHH
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAII 321 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a----~~~~p~ILfIDEID~L~ 321 (496)
..+++++||+||||||||++|+++|++++.+++.++++++.+++.|..+..++.+|..+ +...|+||||||||.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 45678999999999999999999999999999999999999999999999999999988 56788999999999998
Q ss_pred hhhcCCcchhHHhhhhhhhhhhhccCcc----------ccCcEEEEEeccCCcccccHHHHH--HhhhhhcccCCCHHHH
Q 010975 322 SQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR 389 (496)
Q Consensus 322 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~~~P~~eeR 389 (496)
+.+.+........+.+...|+..+|+.. ....+++||+|||.++.+|++++| ||+..+. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 8654333222334567788888887443 133468899999999999999997 8987675 5799999
Q ss_pred HHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhh
Q 010975 390 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL 425 (496)
Q Consensus 390 ~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~ 425 (496)
.+|++.++... +.+.+.+++.+.+|++++|..
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 99999887643 456778999999999999864
No 30
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.84 E-value=4.8e-23 Score=223.51 Aligned_cols=200 Identities=23% Similarity=0.232 Sum_probs=140.1
Q ss_pred cCCccccccccccCCCCCCCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCcc
Q 010975 170 LNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW 249 (496)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~ 249 (496)
...+.++|+++....||......... .......-+++++|++++++.+.+.+......... ++
T Consensus 46 e~~~~~~~l~~~~~lp~~~~~~~~~~-----------~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~------~g 108 (543)
T 3m6a_A 46 ESSVIRNYIDWLVALPWTDETDDKLD-----------LKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL------KG 108 (543)
T ss_dssp TTTHHHHHHHHHHHSCSSCCCCCCCC-----------TTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC------CS
T ss_pred hHhHHHHHHHHHhcCCCCcccccccc-----------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC------CC
Confidence 34588899998888888765443211 11112223578999999999998877654433322 45
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc---------cccCChHHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 320 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~---------~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L 320 (496)
.+++|+||||||||++|+++|..++.++..++++.+.. .+.|...+.+...|..+....| ||||||||.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l 187 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKM 187 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhh
Confidence 68999999999999999999999999999998876543 4667777777888888876665 9999999998
Q ss_pred HhhhcCCcchhHHhhhhhhhhhhhccCccc------------cCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHH
Q 010975 321 ISQRGEARSEHEASRRLKTELLIQMDGLTQ------------SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEA 388 (496)
Q Consensus 321 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~------------~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~ee 388 (496)
..+++. ...+.|+..++.... ....++||+|||.++.++++|++||. ++.++.|+.++
T Consensus 188 ~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e 257 (543)
T 3m6a_A 188 SSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTEIE 257 (543)
T ss_dssp C------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHH
T ss_pred hhhhcc---------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHH
Confidence 655321 133556666653221 11457899999999999999999996 59999999999
Q ss_pred HHHHHHhhC
Q 010975 389 RRAMFESLL 397 (496)
Q Consensus 389 R~~Il~~~l 397 (496)
+..|++.++
T Consensus 258 ~~~Il~~~l 266 (543)
T 3m6a_A 258 KLEIVKDHL 266 (543)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHH
Confidence 999999876
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.84 E-value=8.5e-24 Score=224.72 Aligned_cols=202 Identities=21% Similarity=0.277 Sum_probs=138.0
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeeccccccc
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSK 288 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~l~~~ 288 (496)
|...|++++|++++++.+.+++.... ....+++++||+||||||||++|+++|++++ .+|+.++++++.++
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~-------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIK-------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH-------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHH-------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 45568999999999999888774322 2234568999999999999999999999998 99999999999999
Q ss_pred ccCChHHHHHHHHHHh---hhcCCcceehhhHHHHHhhhcCCcch--hHHhhhhh---------------hhhhhhccCc
Q 010975 289 WRGDSEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSE--HEASRRLK---------------TELLIQMDGL 348 (496)
Q Consensus 289 ~~G~~e~~l~~lf~~a---~~~~p~ILfIDEID~L~~~r~~~~~~--~~~~~~i~---------------~~Ll~~ld~~ 348 (496)
+.|+++. ++.+|..+ +...|+||||||+|.+++++...... .....+++ +.++..++..
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9999887 89999999 77889999999999998876543211 11112222 2234444311
Q ss_pred -cccCcEEEEEeccCCcccccHHHHH--Hhhh--hhcccCC--CHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCC
Q 010975 349 -TQSDELVFVLAATNLPWELDAAMLR--RLEK--RILVPLP--DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS 421 (496)
Q Consensus 349 -~~~~~~viVIatTn~p~~Ld~aL~r--Rf~~--~I~~~~P--~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~ 421 (496)
...+..++|++|||.++.+|++++| ||+. .+.++.| +.++|.+|++.+.. .+++.++..+.| |+
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQ 254 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hh
Confidence 1235557777999999999999876 9987 5666777 45778888876653 257788889999 89
Q ss_pred chhhcchh
Q 010975 422 DIRLVSKE 429 (496)
Q Consensus 422 dI~~l~~~ 429 (496)
|+..+|..
T Consensus 255 dl~~l~~~ 262 (456)
T 2c9o_A 255 DILSMMGQ 262 (456)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 99999854
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.81 E-value=1.6e-21 Score=195.25 Aligned_cols=214 Identities=18% Similarity=0.208 Sum_probs=154.1
Q ss_pred chhhcchHHHHHHhhhhcccccCcccccc-c---cCccceeeeeCCCCChhHHHHHHHHhhhcc-------eeeeeeccc
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTG-L---LSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISASS 284 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~-~---~~~~~~vLL~GPpGtGKT~LAralA~~l~~-------~~i~v~~s~ 284 (496)
.+++|++++|+.|.+.+..... +..... + ..++.++||+||||||||++|+++|+.++. +++.+++++
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 3799999999999998865432 111111 1 234457999999999999999999998843 899999999
Q ss_pred ccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 285 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 285 l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
+.+.+.|.....+..+|..+. ++||||||+|.+...+++ ......+++.|+..++. ....++||+++|.+
T Consensus 110 l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~---~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMEN---NRDDLVVILAGYAD 179 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHH---CTTTCEEEEEECHH
T ss_pred hhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhc---CCCCEEEEEeCChH
Confidence 999999999998888888774 489999999998654322 12234566778887773 23346677888765
Q ss_pred c-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC-Ccceeeeccc-------CCcCCchhhcchhhh
Q 010975 365 W-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE-------GYSGSDIRLVSKEAA 431 (496)
Q Consensus 365 ~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~-~l~~la~~t~-------g~s~~dI~~l~~~A~ 431 (496)
. .+++++++||+..+.|+.|+.+++..|++.++.......+. .++.++.... .-..+++..+++.+.
T Consensus 180 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 180 RMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 3 35789999998889999999999999999998765433221 1222333311 122466777777777
Q ss_pred ccHHHHHHH
Q 010975 432 MQPLRRLMV 440 (496)
Q Consensus 432 ~~a~rR~~~ 440 (496)
..+..|...
T Consensus 260 ~~~~~r~~~ 268 (309)
T 3syl_A 260 LRQANRLFT 268 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 776666554
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.79 E-value=3.4e-20 Score=184.75 Aligned_cols=252 Identities=21% Similarity=0.282 Sum_probs=159.7
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccc--cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccCC
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 292 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~--~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G~ 292 (496)
++++|++++++.+...+..+.......... ...+.++||+||||||||++|+++|+.++.+++.++++++.. .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 469999999999998886543332222111 234578999999999999999999999999999999998875 45543
Q ss_pred -hHHHHHHHHHHhh-----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc-------cCcEEEEEe
Q 010975 293 -SEKLIKVLFELAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLA 359 (496)
Q Consensus 293 -~e~~l~~lf~~a~-----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~viVIa 359 (496)
....++.++..+. ...++||||||+|.+......... ......+.+.|+..+++... ....+++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~-~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccccc-chhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 2345666665331 123579999999999765432211 12223345667777765311 123456777
Q ss_pred c----cCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceee---ecccCCcCCchhhcchhhhc
Q 010975 360 A----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLV---ERTEGYSGSDIRLVSKEAAM 432 (496)
Q Consensus 360 t----Tn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la---~~t~g~s~~dI~~l~~~A~~ 432 (496)
+ ++.+..+++++++||+..+.+++|+.+++..|++..+...... +.... ...-.++...+..+++.++.
T Consensus 174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 249 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQ----YKALMATEGVNIAFTTDAVKKIAEAAFR 249 (310)
T ss_dssp EECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHH----HHHHHHHTTCEEEECHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHH----HHHHHHhcCCeeccCHHHHHHHHHHhhh
Confidence 7 5677889999999999889999999999999998543210000 00000 00012444556666666552
Q ss_pred -------cHHHHHHHHhhcccc-----CCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975 433 -------QPLRRLMVLLEGRQE-----VAPDDELPQIGPIRPEDVEIALKNTRP 474 (496)
Q Consensus 433 -------~a~rR~~~~le~~~~-----i~~~~~~~~~~~It~eDf~~Al~~~~P 474 (496)
+.+|++.+.++.... ....+ .....||.+|+.++++....
T Consensus 250 ~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~--~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 250 VNEKTENIGARRLHTVMERLMDKISFSASDMN--GQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCT--TCEEEECHHHHHHHTCSSSS
T ss_pred hcccccccCcHHHHHHHHHHHHhhhcCCcccc--CCEEEEeeHHHHHHHHhhhh
Confidence 555655555443220 11111 11124899999999987643
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.78 E-value=9.7e-20 Score=184.80 Aligned_cols=170 Identities=16% Similarity=0.180 Sum_probs=124.7
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 283 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s 283 (496)
..+..++.+.+|++++|.+.+++.+.+.+....... .+..++||+||||||||++|+++|++++.+++.+++.
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~-------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~ 89 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRN-------ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAP 89 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTT-------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcC-------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence 355667778899999999999999999886543211 2346899999999999999999999999999999987
Q ss_pred cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------------
Q 010975 284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------------- 349 (496)
Q Consensus 284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------------- 349 (496)
.+. ....+...+... ..+++|||||||.+... ....|+..++...
T Consensus 90 ~~~------~~~~~~~~~~~~--~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 148 (338)
T 3pfi_A 90 MIE------KSGDLAAILTNL--SEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTI 148 (338)
T ss_dssp GCC------SHHHHHHHHHTC--CTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCC
T ss_pred hcc------chhHHHHHHHhc--cCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccce
Confidence 653 233444444432 34689999999987432 2233444443221
Q ss_pred -ccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 350 -QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 350 -~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
.....+++|++||....+++++++||+..+.++.|+.+++..+++.++....
T Consensus 149 ~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~ 201 (338)
T 3pfi_A 149 KIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN 201 (338)
T ss_dssp CCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT
T ss_pred ecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC
Confidence 1112478899999999999999999988899999999999999998876543
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.77 E-value=1e-19 Score=186.37 Aligned_cols=221 Identities=17% Similarity=0.162 Sum_probs=140.0
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeeccccccc
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSK 288 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~s~l~~~ 288 (496)
|...|++++|++.+++.+..+..... ....+++++||+||||||||++|+++|+.++. +++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 44559999999999988765543221 11233478999999999999999999999974 7777776553332
Q ss_pred cc-------------------------------------------------CChHHHHHHHHHHhhh---------cCCc
Q 010975 289 WR-------------------------------------------------GDSEKLIKVLFELARH---------HAPS 310 (496)
Q Consensus 289 ~~-------------------------------------------------G~~e~~l~~lf~~a~~---------~~p~ 310 (496)
+. |.....++..+..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 21 2223344444444332 1267
Q ss_pred ceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc-----------CCcccccHHHHHHhhhhh
Q 010975 311 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT-----------NLPWELDAAMLRRLEKRI 379 (496)
Q Consensus 311 ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT-----------n~p~~Ld~aL~rRf~~~I 379 (496)
||||||+|.+.. ...+.|+..++.. ...++++++. |.+..+++++++||.. +
T Consensus 192 vl~IDEi~~l~~-------------~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i 254 (368)
T 3uk6_A 192 VLFIDEVHMLDI-------------ESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-V 254 (368)
T ss_dssp EEEEESGGGSBH-------------HHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-E
T ss_pred eEEEhhccccCh-------------HHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-E
Confidence 999999998732 2334555555532 2224444443 3467899999999977 8
Q ss_pred cccCCCHHHHHHHHHhhCCCCCCCC-CCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCC
Q 010975 380 LVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG 458 (496)
Q Consensus 380 ~~~~P~~eeR~~Il~~~l~~~~~~~-~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~ 458 (496)
.+++|+.+++..+++..+....... +..++.+++.+.+.+++++..+++.|...+..+ ...
T Consensus 255 ~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------------------~~~ 316 (368)
T 3uk6_A 255 STTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------------------KGT 316 (368)
T ss_dssp EECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT------------------TCS
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------------------CCC
Confidence 9999999999999998876543321 112333444444333444445555444433221 113
Q ss_pred CCCchhHHHHhhcCC
Q 010975 459 PIRPEDVEIALKNTR 473 (496)
Q Consensus 459 ~It~eDf~~Al~~~~ 473 (496)
.||.+|+.+++..+.
T Consensus 317 ~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 317 EVQVDDIKRVYSLFL 331 (368)
T ss_dssp SBCHHHHHHHHHHSB
T ss_pred CCCHHHHHHHHHHhc
Confidence 599999999999754
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.75 E-value=9.5e-19 Score=172.56 Aligned_cols=229 Identities=20% Similarity=0.258 Sum_probs=143.3
Q ss_pred chhhcchHHHHHHhhh---hcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc-ccccC
Q 010975 216 ESIKGLENAKRLLKEA---VVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRG 291 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~---l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~-~~~~G 291 (496)
+.++|.+...+.+... +...+. .....++.++||+||||||||++|+++|+.++.+++.+++++.. +...+
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~-----~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTK-----NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHH-----HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHh-----ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchH
Confidence 4567776665555542 111111 00123457899999999999999999999999999999876522 21112
Q ss_pred ChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH-H
Q 010975 292 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-A 370 (496)
Q Consensus 292 ~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~-a 370 (496)
.....++.+|..+....+++|||||+|.+.+.+... ......++..|...+++.......++||+|||.++.+++ .
T Consensus 108 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 108 AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC---hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhh
Confidence 233567788888877778999999999997653321 112244556666677766556677889999999998888 6
Q ss_pred HHHHhhhhhcccCCCH-HHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCC
Q 010975 371 MLRRLEKRILVPLPDT-EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 449 (496)
Q Consensus 371 L~rRf~~~I~~~~P~~-eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~ 449 (496)
+.+||...+.+|.++. ++...++... ... .+..+..+++.+.|++ +...+|++++.++......
T Consensus 185 l~~rf~~~i~~p~l~~r~~i~~i~~~~---~~~-~~~~~~~l~~~~~g~~-----------~~g~ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 185 MLNAFSTTIHVPNIATGEQLLEALELL---GNF-KDKERTTIAQQVKGKK-----------VWIGIKKLLMLIEMSLQMD 249 (272)
T ss_dssp CTTTSSEEEECCCEEEHHHHHHHHHHH---TCS-CHHHHHHHHHHHTTSE-----------EEECHHHHHHHHHHHTTSC
T ss_pred hhcccceEEcCCCccHHHHHHHHHHhc---CCC-CHHHHHHHHHHhcCCC-----------ccccHHHHHHHHHHHhhhc
Confidence 7889988787766655 4444444431 111 1112333344444332 2335666666666544322
Q ss_pred CCCCCCCCCCCCchhHHHHhhcCCCC
Q 010975 450 PDDELPQIGPIRPEDVEIALKNTRPS 475 (496)
Q Consensus 450 ~~~~~~~~~~It~eDf~~Al~~~~Ps 475 (496)
+ ....+++.+++.....+
T Consensus 250 ~--------~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 250 P--------EYRVRKFLALLREEGAS 267 (272)
T ss_dssp G--------GGHHHHHHHHHHHTSCC
T ss_pred h--------HHHHHHHHHHHHHcCCc
Confidence 1 13566777777666554
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.73 E-value=1.8e-18 Score=183.37 Aligned_cols=228 Identities=21% Similarity=0.264 Sum_probs=151.2
Q ss_pred hhhhCCCCCccchhhcchHHH---HHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 205 DIIRGSPDVKWESIKGLENAK---RLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk---~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.+.....+.+|++++|+++++ +.|...+.... ..++||+||||||||++|+++|+.++.+++.++
T Consensus 15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~------------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH------------LHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTC------------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCC------------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 344556778899999999999 66766664321 258999999999999999999999999999998
Q ss_pred cccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975 282 ASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 357 (496)
Q Consensus 282 ~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 357 (496)
+... ....++.++..+.. ..++||||||||.+... .++.|+..++. ...++|
T Consensus 83 a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~~v~lI 138 (447)
T 3pvs_A 83 AVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----GTITFI 138 (447)
T ss_dssp TTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TSCEEE
T ss_pred eccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----CceEEE
Confidence 7543 23345555555442 35689999999987433 23456666663 333444
Q ss_pred EeccCCc-ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHH
Q 010975 358 LAATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 436 (496)
Q Consensus 358 IatTn~p-~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~r 436 (496)
.+||.++ ..+++++++|+.. +.++.|+.+++..+++..+......... ..-.++...+..+++. +.+.+|
T Consensus 139 ~att~n~~~~l~~aL~sR~~v-~~l~~l~~edi~~il~~~l~~~~~~~~~-------~~~~i~~~al~~L~~~-~~Gd~R 209 (447)
T 3pvs_A 139 GATTENPSFELNSALLSRARV-YLLKSLSTEDIEQVLTQAMEDKTRGYGG-------QDIVLPDETRRAIAEL-VNGDAR 209 (447)
T ss_dssp EEESSCGGGSSCHHHHTTEEE-EECCCCCHHHHHHHHHHHHHCTTTSSTT-------SSEECCHHHHHHHHHH-HCSCHH
T ss_pred ecCCCCcccccCHHHhCceeE-EeeCCcCHHHHHHHHHHHHHHHhhhhcc-------ccCcCCHHHHHHHHHH-CCCCHH
Confidence 4454444 5799999999974 8899999999999999988653322110 0011333444444444 667778
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCCCccc
Q 010975 437 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 478 (496)
Q Consensus 437 R~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~Ps~~~ 478 (496)
++.+.++........+. .....||.+|+.+++....+....
T Consensus 210 ~lln~Le~a~~~a~~~~-~~~~~It~e~v~~~l~~~~~~~dk 250 (447)
T 3pvs_A 210 RALNTLEMMADMAEVDD-SGKRVLKPELLTEIAGERSARFDN 250 (447)
T ss_dssp HHHHHHHHHHHHSCBCT-TSCEECCHHHHHHHHTCCCCC---
T ss_pred HHHHHHHHHHHhccccc-CCCCccCHHHHHHHHhhhhhccCC
Confidence 77777765554332110 012359999999999988765543
No 38
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.73 E-value=2.2e-18 Score=183.72 Aligned_cols=191 Identities=20% Similarity=0.301 Sum_probs=133.0
Q ss_pred hhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---------
Q 010975 203 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 273 (496)
Q Consensus 203 ~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l--------- 273 (496)
.+++...+.+.++++++|.++.++++.+.+... ..+++||+||||||||++|+++|+.+
T Consensus 167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l 234 (468)
T 3pxg_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL 234 (468)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhh
Confidence 355666677788999999999999999887542 23689999999999999999999997
Q ss_pred -cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccC
Q 010975 274 -KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 352 (496)
Q Consensus 274 -~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 352 (496)
+.+++.++++ +.+.|.++..++.++..+....++||||| +. ....+.|+..++ ++
T Consensus 235 ~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~-----------~~a~~~L~~~L~----~g 290 (468)
T 3pxg_A 235 RDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA----RG 290 (468)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT----SS
T ss_pred cCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc-----------hhHHHHHHHhhc----CC
Confidence 7789999887 67888888899999999998888999999 11 112233444443 22
Q ss_pred cEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCc-----ceeeecccCCcCC-
Q 010975 353 ELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY-----DLLVERTEGYSGS- 421 (496)
Q Consensus 353 ~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l-----~~la~~t~g~s~~- 421 (496)
.+.+|++||.+. .++++++|||.. +.++.|+.+++..|++.++..+...++..+ ..++..+.+|.+.
T Consensus 291 -~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~ 368 (468)
T 3pxg_A 291 -ELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (468)
T ss_dssp -SCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred -CEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Confidence 466788888775 689999999986 999999999999999998877544333333 3345555555443
Q ss_pred ----chhhcchhhh
Q 010975 422 ----DIRLVSKEAA 431 (496)
Q Consensus 422 ----dI~~l~~~A~ 431 (496)
....++.+|+
T Consensus 369 ~lp~~ai~ll~~a~ 382 (468)
T 3pxg_A 369 FLPDKAIDLIDEAG 382 (468)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHH
Confidence 3444444443
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.72 E-value=1.4e-18 Score=159.21 Aligned_cols=168 Identities=21% Similarity=0.334 Sum_probs=119.4
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------- 273 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---------- 273 (496)
..+....++..|++++|.++..+++.+.+.. ..+.+++|+||||||||++|+++++.+
T Consensus 10 ~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~ 77 (195)
T 1jbk_A 10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLK 77 (195)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGT
T ss_pred HHHHHHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 3444455566799999999999999887743 123689999999999999999999987
Q ss_pred cceeeeeeccccc--ccccCChHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc
Q 010975 274 KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 350 (496)
Q Consensus 274 ~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~ 350 (496)
+.+++.+++..+. ..+.+.....+..++..+.. ..+.||+|||+|.+....... ....+.+.+...++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~-----~~~~~~~~l~~~~~---- 148 (195)
T 1jbk_A 78 GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-----GAMDAGNMLKPALA---- 148 (195)
T ss_dssp TCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-----------CCCCHHHHHHHHH----
T ss_pred CCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc-----chHHHHHHHHHhhc----
Confidence 6788888887765 23445566677777776543 446799999999986542211 01122222333332
Q ss_pred cCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHH
Q 010975 351 SDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFE 394 (496)
Q Consensus 351 ~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~ 394 (496)
...+.+|++||.+. .+++++++||.. +.++.|+.+++.+|++
T Consensus 149 -~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~-i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 149 -RGELHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAILR 195 (195)
T ss_dssp -TTSCCEEEEECHHHHHHHTTTCHHHHTTEEE-EECCCCCHHHHHTTCC
T ss_pred -cCCeEEEEeCCHHHHHHHHhcCHHHHHHhce-eecCCCCHHHHHHHhC
Confidence 12356777888775 689999999984 9999999999998763
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.71 E-value=2.6e-18 Score=176.72 Aligned_cols=179 Identities=22% Similarity=0.334 Sum_probs=126.1
Q ss_pred hhhcchHHHHHHhhhhcccccCcccc---ccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc-ccCC
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYF---TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGD 292 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~---~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~-~~G~ 292 (496)
.|+|++.+++.+...+.......... .....++.++||+||||||||++|+++|+.++.+++.++++++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 47999999999998885332221111 1112356789999999999999999999999999999999988753 6666
Q ss_pred h-HHHHHHHHHHh----hhcCCcceehhhHHHHHhhhcCCcchhHH-hhhhhhhhhhhccCccc----------cCcEEE
Q 010975 293 S-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ----------SDELVF 356 (496)
Q Consensus 293 ~-e~~l~~lf~~a----~~~~p~ILfIDEID~L~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~~----------~~~~vi 356 (496)
. ...++.++..+ ....++||||||+|.+...+......... .+.+++.|+..|++... ....++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55667777665 33456899999999998765443322222 23478889998884311 011234
Q ss_pred EEeccCC--------c----------------------------------------cc-----ccHHHHHHhhhhhcccC
Q 010975 357 VLAATNL--------P----------------------------------------WE-----LDAAMLRRLEKRILVPL 383 (496)
Q Consensus 357 VIatTn~--------p----------------------------------------~~-----Ld~aL~rRf~~~I~~~~ 383 (496)
+|+|||. . .. +.++|.+||+.++.+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 5555554 1 11 67899999999999999
Q ss_pred CCHHHHHHHHHh
Q 010975 384 PDTEARRAMFES 395 (496)
Q Consensus 384 P~~eeR~~Il~~ 395 (496)
|+.+++.+|+..
T Consensus 256 l~~~~~~~I~~~ 267 (363)
T 3hws_A 256 LSEEALIQILKE 267 (363)
T ss_dssp CCHHHHHHHHHS
T ss_pred CCHHHHHHHHHH
Confidence 999999999987
No 41
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.71 E-value=2.9e-18 Score=180.61 Aligned_cols=166 Identities=20% Similarity=0.232 Sum_probs=83.2
Q ss_pred chhhcchHHHHHHhhhhcccccCcccccccc--CccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccc-cccCC
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLL--SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 292 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~--~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~-~~~G~ 292 (496)
++|+|++++|+.|...+..+.+++..+.... .+++++||+||||||||++|+++|+.++.+++.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 5799999999999999877665555444331 24678999999999999999999999999999999999888 58985
Q ss_pred -hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEec-cCCcccccHH
Q 010975 293 -SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA-TNLPWELDAA 370 (496)
Q Consensus 293 -~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIat-Tn~p~~Ld~a 370 (496)
.+..++.+|..+.. ++++||++.+... ......++++++|+..||++..... + +++ ||+++.+|++
T Consensus 95 d~e~~lr~lf~~a~~----~~~~De~d~~~~~-----~~~~~e~rvl~~LL~~~dg~~~~~~-v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMK----LVRQQEIAKNRAR-----AEDVAEERILDALLPPAKNQWGEVE-N--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHH----HHHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHh----cchhhhhhhhhcc-----chhhHHHHHHHHHHHHhhccccccc-c--ccccccCHHHHHHH
Confidence 89999999998876 5678998775322 2334557899999999999865443 3 455 9999999999
Q ss_pred HHH--HhhhhhcccCCCHH-HHHHHH
Q 010975 371 MLR--RLEKRILVPLPDTE-ARRAMF 393 (496)
Q Consensus 371 L~r--Rf~~~I~~~~P~~e-eR~~Il 393 (496)
|+| ||++.|++++|+.. .|.+|+
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhh
Confidence 998 99999999999987 666664
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.71 E-value=3.6e-18 Score=172.33 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=119.3
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 284 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~ 284 (496)
.|.+++++.+|++++|++++++.|.+.+... ..++.+|++||||||||++|++++++++.+++.+++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~-----------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSKG-----------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHTT-----------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 4667788889999999999999999988631 23356788899999999999999999999999999876
Q ss_pred ccccccCChHHHHHHHHHHhhhc-----CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEe
Q 010975 285 VVSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 359 (496)
Q Consensus 285 l~~~~~G~~e~~l~~lf~~a~~~-----~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 359 (496)
.. ...++..+...... .+.||+|||+|.+.+ ....+.|+..++.. ...+.+|+
T Consensus 84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~---~~~~~iI~ 141 (324)
T 3u61_B 84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAY---SSNCSIII 141 (324)
T ss_dssp CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHH---GGGCEEEE
T ss_pred cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHhC---CCCcEEEE
Confidence 42 33444434332222 467999999998741 11234455555532 23456788
Q ss_pred ccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975 360 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 397 (496)
Q Consensus 360 tTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l 397 (496)
+||.+..+++++++||. .+.++.|+.+++.+|++.++
T Consensus 142 ~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 142 TANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp EESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHH
T ss_pred EeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999996 49999999999877766553
No 43
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.71 E-value=1.6e-17 Score=155.68 Aligned_cols=207 Identities=17% Similarity=0.188 Sum_probs=136.7
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeee
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 280 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v 280 (496)
+...+++..|++++|.+++++.+.+.+... ...+++|+||||||||++++++++++ ...++.+
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 445567788999999999999999987542 12359999999999999999999986 4557777
Q ss_pred ecccccccccCChHHHHHHHHHHhh------hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcE
Q 010975 281 SASSVVSKWRGDSEKLIKVLFELAR------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 354 (496)
Q Consensus 281 ~~s~l~~~~~G~~e~~l~~lf~~a~------~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 354 (496)
+++...+ ...+...+.... ...+.+|+|||+|.+... ..+.|+..++. ....
T Consensus 75 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~---~~~~ 132 (226)
T 2chg_A 75 NASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKS 132 (226)
T ss_dssp ETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTT
T ss_pred ccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-------------HHHHHHHHHHh---cCCC
Confidence 7654322 122222222211 245689999999987432 12334444442 2233
Q ss_pred EEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccH
Q 010975 355 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 434 (496)
Q Consensus 355 viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a 434 (496)
+.+|++||.+..+++++.+||. .+.+++|+.++...+++.++...... ++...+..+. +.+.++
T Consensus 133 ~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~l~-~~~~g~ 196 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVK--------------ITEDGLEALI-YISGGD 196 (226)
T ss_dssp EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCC--------------BCHHHHHHHH-HHHTTC
T ss_pred CeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHH-HHcCCC
Confidence 5677788999999999999997 69999999999999999877543222 1112222222 233444
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhh
Q 010975 435 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 470 (496)
Q Consensus 435 ~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~ 470 (496)
.+++.+.++...... ..||.+|+++++.
T Consensus 197 ~r~l~~~l~~~~~~~--------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 197 FRKAINALQGAAAIG--------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHHHTC--------SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------ceecHHHHHHHhc
Confidence 454444444332211 2489999999886
No 44
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=8.5e-18 Score=168.95 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=120.4
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 288 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~ 288 (496)
++.+.+|++++|.+.+++.+.+.+...... ...+.++||+||||||||++|++++++++.+++.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 456678999999999999999887543211 123468999999999999999999999999999998876532
Q ss_pred ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc---------------ccCc
Q 010975 289 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDE 353 (496)
Q Consensus 289 ~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~ 353 (496)
...+...+..+ ...+++|||||+|.+.... ...|+..++... ....
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~~-------------~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLSRQA-------------EEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCCHHH-------------HHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCcccccch-------------HHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 23333333321 1346899999998874321 122333332110 0112
Q ss_pred EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
.+.+|++||.+..+++++.+||...+.++.|+.+++..+++.++....
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~ 185 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 185 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 467889999999999999999987899999999999999999876543
No 45
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=1.6e-17 Score=186.77 Aligned_cols=192 Identities=20% Similarity=0.282 Sum_probs=134.0
Q ss_pred HhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh--------
Q 010975 202 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 273 (496)
Q Consensus 202 ~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-------- 273 (496)
..+++...+.+.++++++|.++.++++.+.+... ..+++||+||||||||++|+++|+.+
T Consensus 166 ~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~ 233 (758)
T 3pxi_A 166 LARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI 233 (758)
T ss_dssp SCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT
T ss_pred HHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCC------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChh
Confidence 3456666677788999999999999999987542 23689999999999999999999997
Q ss_pred --cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcccc
Q 010975 274 --KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 351 (496)
Q Consensus 274 --~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 351 (496)
+.+++.+++ ..+|.|+++..++.+|..+....|+||||| +. ....+.|+..++ +
T Consensus 234 l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~-----------~~~~~~L~~~l~----~ 289 (758)
T 3pxi_A 234 LRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA----R 289 (758)
T ss_dssp TSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT----S
T ss_pred hcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc-----------hhHHHHHHHHHh----c
Confidence 788888887 556789999999999999998889999999 10 112234444443 2
Q ss_pred CcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcce-----eeecc-----c
Q 010975 352 DELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL-----LVERT-----E 416 (496)
Q Consensus 352 ~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~-----la~~t-----~ 416 (496)
+ .+.+|++||... .++++++|||.. +.++.|+.+++..|++.++..+...+++.+.+ ++..+ +
T Consensus 290 ~-~v~~I~at~~~~~~~~~~~d~al~rRf~~-i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~ 367 (758)
T 3pxi_A 290 G-ELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (758)
T ss_dssp S-SCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred C-CEEEEeCCChHHHHHHhhccHHHHhhCcE-EEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccc
Confidence 2 366788888776 699999999965 99999999999999999887755444444332 33333 3
Q ss_pred CCcCCchhhcchhhh
Q 010975 417 GYSGSDIRLVSKEAA 431 (496)
Q Consensus 417 g~s~~dI~~l~~~A~ 431 (496)
++.++....++.+|+
T Consensus 368 ~~~p~~ai~ll~~a~ 382 (758)
T 3pxi_A 368 RFLPDKAIDLIDEAG 382 (758)
T ss_dssp SCTTHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHH
Confidence 444555555555554
No 46
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.67 E-value=8.1e-17 Score=160.70 Aligned_cols=166 Identities=21% Similarity=0.199 Sum_probs=120.9
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeee
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFN 279 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~ 279 (496)
.|.+++++.+|++++|++++++.|.+.+... ...++||+||||||||++|+++++.+ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTT------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCC------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 4567788889999999999999999887531 11359999999999999999999987 456788
Q ss_pred eecccccccccCChHHHHHHHHHHhh--hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEE
Q 010975 280 ISASSVVSKWRGDSEKLIKVLFELAR--HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 357 (496)
Q Consensus 280 v~~s~l~~~~~G~~e~~l~~lf~~a~--~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 357 (496)
+++++..+. ......+........ ...+.||+|||+|.+... ..+.|+..++. ....+.+
T Consensus 74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~ 135 (319)
T 2chq_A 74 MNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCRF 135 (319)
T ss_dssp EETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTSS---SSSSEEE
T ss_pred EeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCeE
Confidence 887764321 122222333221111 134689999999987322 23456666653 2344667
Q ss_pred EeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 358 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 358 IatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
|++||.+..+.+++.+|+. .+.+++|+.++...+++..+....
T Consensus 136 i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~ 178 (319)
T 2chq_A 136 ILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEG 178 (319)
T ss_dssp EEEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcC
Confidence 7888999999999999997 599999999999999998876543
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.67 E-value=8.2e-18 Score=189.06 Aligned_cols=231 Identities=23% Similarity=0.291 Sum_probs=154.1
Q ss_pred hhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------cce
Q 010975 207 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTT 276 (496)
Q Consensus 207 ~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~~~ 276 (496)
.....+.+|++++|.++.++++.+.+... ..+++||+||||||||++|+++|+.+ +.+
T Consensus 177 ~~~~~~~~~d~~iGr~~~i~~l~~~l~~~------------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~ 244 (758)
T 1r6b_X 177 NQLARVGGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCT 244 (758)
T ss_dssp HHHHHTTCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCE
T ss_pred HHHHhcCCCCCccCCHHHHHHHHHHHhcc------------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCE
Confidence 33334557999999999999999887542 23689999999999999999999987 667
Q ss_pred eeeeeccccc--ccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcE
Q 010975 277 FFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 354 (496)
Q Consensus 277 ~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 354 (496)
++.++++.+. ..+.|..+..++.++..+....++||||||+|.+.+.........+ ..+.|...++ .+ .
T Consensus 245 ~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~----~~~~L~~~l~----~~-~ 315 (758)
T 1r6b_X 245 IYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD----AANLIKPLLS----SG-K 315 (758)
T ss_dssp EEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH----HHHHHSSCSS----SC-C
T ss_pred EEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHH----HHHHHHHHHh----CC-C
Confidence 8888887776 4688999999999999998877899999999999765433212221 2222323332 22 3
Q ss_pred EEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCC-----CcceeeecccCCc-----
Q 010975 355 VFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-----PYDLLVERTEGYS----- 419 (496)
Q Consensus 355 viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~-----~l~~la~~t~g~s----- 419 (496)
+.+|++|+.++ .+|+++.+||. .+.++.|+.+++.+|++.++......+.. .+..++..+.+|.
T Consensus 316 ~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~l 394 (758)
T 1r6b_X 316 IRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL 394 (758)
T ss_dssp CEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCT
T ss_pred eEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccC
Confidence 56777777653 47889999998 49999999999999999876542211111 2333444444433
Q ss_pred CCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975 420 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 473 (496)
Q Consensus 420 ~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~ 473 (496)
+..+..++.+|+... + +. +.. .....|+.+|+..++....
T Consensus 395 p~~~i~lld~a~~~~--~----~~------~~~--~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 395 PDKAIDVIDEAGARA--R----LM------PVS--KRKKTVNVADIESVVARIA 434 (758)
T ss_dssp THHHHHHHHHHHHHH--H----HS------SSC--CCCCSCCHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHH--h----cc------ccc--ccCCccCHHHHHHHHHHhc
Confidence 334444555443211 1 00 000 1123589999999988753
No 48
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.66 E-value=2.2e-16 Score=161.40 Aligned_cols=169 Identities=20% Similarity=0.188 Sum_probs=117.1
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecc
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS 283 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s 283 (496)
...++++|.++.++.+.+.+...... ..+.+++|+||||||||++++++++.+ +.+++.+++.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRG--------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSS--------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 34578999999999999987543211 234689999999999999999999988 7889999986
Q ss_pred ccccc----------------ccCC-hHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhc
Q 010975 284 SVVSK----------------WRGD-SEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 345 (496)
Q Consensus 284 ~l~~~----------------~~G~-~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~l 345 (496)
...+. ..|. .......++..... ..|.||+|||+|.+.... .....+..++..+
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRIN 159 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhch
Confidence 54321 1122 22334445544433 336799999999996431 0122334444444
Q ss_pred cCccccCcEEEEEeccCCc---ccccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCC
Q 010975 346 DGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 346 d~~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~ 398 (496)
+.... ...+.+|++||.+ +.+++++.+||.. .+.+++|+.++..++++..+.
T Consensus 160 ~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 160 QELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp GCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred hhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 32210 3456778888877 6789999999975 799999999999999998864
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.66 E-value=6.6e-17 Score=170.98 Aligned_cols=222 Identities=17% Similarity=0.252 Sum_probs=132.1
Q ss_pred CCCCccchhh-cchH--HHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeee
Q 010975 210 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 281 (496)
Q Consensus 210 ~~~~~l~dli-G~e~--vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~ 281 (496)
.|..+|++++ |... +...+......+. . .++++|+||||+|||+||+++++.+ +.+++.++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~----------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHPG----------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHSTT----------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCCC----------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4556799977 6433 3444444333221 1 3689999999999999999999988 78889999
Q ss_pred cccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEecc
Q 010975 282 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 361 (496)
Q Consensus 282 ~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatT 361 (496)
+..+...+.+.........|.......+.||||||+|.+.... .....++..++.....+ ..+|+++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-----------~~q~~l~~~l~~l~~~~-~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-----------GVQTELFHTFNELHDSG-KQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-----------HHHHHHHHHHHHHHTTT-CEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHHHCC-CeEEEEEC
Confidence 8876544332222111112222222257899999999885321 11233444443322233 34455555
Q ss_pred CCccc---ccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCCCCC-CCCcceeeecccCCcCCchhhcchhhhccHH
Q 010975 362 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 435 (496)
Q Consensus 362 n~p~~---Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~~~~-~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~ 435 (496)
+.+.. +++++++||. ..+.+++|+.++|..|++..+....... +..++.++..+.| +.+++..+++.+...+.
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 55654 8899999996 6799999999999999998875433221 1113334443332 11222222222221110
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975 436 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 474 (496)
Q Consensus 436 rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P 474 (496)
. . ..+||.+++.++++...+
T Consensus 315 ------~---------~----~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 315 ------T---------T----GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp ------H---------S----SSCCCHHHHHHHTSTTTC
T ss_pred ------H---------h----CCCCCHHHHHHHHHHHhh
Confidence 0 0 124899999999988764
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.65 E-value=3.8e-17 Score=154.73 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=113.9
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee--ec-
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI--SA- 282 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v--~~- 282 (496)
+...+.+..+++++|.+..++.|.+.+... ..++.++|+||||+|||++++++++.++...... .+
T Consensus 13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~ 81 (250)
T 1njg_A 13 LARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 81 (250)
T ss_dssp HHHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCS
T ss_pred HhhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 455667778999999999999999887532 1234799999999999999999999885422110 00
Q ss_pred -------------ccccccc--cCChHHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhh
Q 010975 283 -------------SSVVSKW--RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 343 (496)
Q Consensus 283 -------------s~l~~~~--~G~~e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~ 343 (496)
.++.... .......++.++..+. ...+.+|+|||+|.+.. ...+.|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-------------~~~~~l~~ 148 (250)
T 1njg_A 82 VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLK 148 (250)
T ss_dssp CSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-------------HHHHHHHH
T ss_pred ccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-------------HHHHHHHH
Confidence 0011000 0112334555665543 23468999999988621 12344555
Q ss_pred hccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975 344 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 344 ~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
.++.. ...+.+|++|+.+..+++++.+|+ ..+.+++++.++..++++.++...
T Consensus 149 ~l~~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~ 201 (250)
T 1njg_A 149 TLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEE 201 (250)
T ss_dssp HHHSC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHT
T ss_pred HHhcC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhc
Confidence 55532 334667778888888999999997 459999999999999999887543
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=8.1e-17 Score=163.36 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=115.1
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc------eee
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------TFF 278 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~------~~i 278 (496)
.+.+++++.+|++++|.+++++.|...+... ...+++|+||||||||++|+++++.++. .++
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 4666788889999999999999999887432 1135999999999999999999998753 477
Q ss_pred eeecccccccccCChHHHHHHHHHH------------hhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975 279 NISASSVVSKWRGDSEKLIKVLFEL------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 346 (496)
Q Consensus 279 ~v~~s~l~~~~~G~~e~~l~~lf~~------------a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 346 (496)
.+++++..+. +.....+...... .....+.||+|||+|.+... ..+.|+..++
T Consensus 94 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------~~~~Ll~~le 158 (353)
T 1sxj_D 94 ELNASDERGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALRRTME 158 (353)
T ss_dssp EECSSSCCCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHHHHHH
T ss_pred EEccccccch--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------HHHHHHHHHH
Confidence 7777654211 0011111111110 01123469999999987432 2244566665
Q ss_pred CccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 347 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 347 ~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
... ..+.+|.+||.+..+.+++++|+. .+.+++|+.++...+++..+....
T Consensus 159 ~~~---~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~ 209 (353)
T 1sxj_D 159 TYS---GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQEN 209 (353)
T ss_dssp HTT---TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred hcC---CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhC
Confidence 322 224456678899999999999997 589999999999999998875443
No 52
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.65 E-value=3.4e-17 Score=149.84 Aligned_cols=155 Identities=23% Similarity=0.350 Sum_probs=110.3
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------cceee
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFF 278 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~~~~i 278 (496)
...+..+++++|.++..+.+.+.+... ...+++|+||||||||++|+++++.+ +.+++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSRR------------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhCC------------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 334556899999999999988877431 23689999999999999999999987 77888
Q ss_pred eeecccccc--cccCChHHHHHHHHHHhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEE
Q 010975 279 NISASSVVS--KWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 355 (496)
Q Consensus 279 ~v~~s~l~~--~~~G~~e~~l~~lf~~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~v 355 (496)
.+++..+.. .+.+.....+..++..+... .|.+|+|||+|.+.+.+..... ...+.+.+...++ ...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~----~~~~~~~l~~~~~-----~~~~ 153 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG----ALDAGNILKPMLA-----RGEL 153 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT----SCCTHHHHHHHHH-----TTCS
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc----chHHHHHHHHHHh-----cCCe
Confidence 888776653 24455566677777776654 5679999999998644321111 1122233333332 1335
Q ss_pred EEEeccCCcc-----cccHHHHHHhhhhhcccCCC
Q 010975 356 FVLAATNLPW-----ELDAAMLRRLEKRILVPLPD 385 (496)
Q Consensus 356 iVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~ 385 (496)
.+|+++|.+. .+++++++||.. +.++.|+
T Consensus 154 ~ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 154 RCIGATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred eEEEecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 6788888775 589999999986 8888885
No 53
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=4.9e-16 Score=159.41 Aligned_cols=217 Identities=21% Similarity=0.209 Sum_probs=139.4
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----------cceeeeeecc
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----------KTTFFNISAS 283 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----------~~~~i~v~~s 283 (496)
.++++|.++.++.+.+.+...... ..+++++|+||||||||++|+++++++ +.+++.+++.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 378999999999999887543321 234689999999999999999999988 8899999976
Q ss_pred ccc-cc-----------------ccCC-hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhh-hhhhhh
Q 010975 284 SVV-SK-----------------WRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-KTELLI 343 (496)
Q Consensus 284 ~l~-~~-----------------~~G~-~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i-~~~Ll~ 343 (496)
... .. ..+. ....+..++..+....+ ||+|||+|.+..... ... +..|+.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~---------~~~~l~~l~~ 160 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG---------GDIVLYQLLR 160 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT---------SHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC---------CceeHHHHhc
Confidence 543 10 1111 12334455555554444 999999999964321 111 223332
Q ss_pred hccCccccCcEEEEEeccCCc---ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcC
Q 010975 344 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG 420 (496)
Q Consensus 344 ~ld~~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~ 420 (496)
.. ..+.+|++||.+ +.+++++.+||...+.+++|+.++..++++..+....... .++.
T Consensus 161 ~~-------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~------------~~~~ 221 (384)
T 2qby_B 161 SD-------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKG------------TYDD 221 (384)
T ss_dssp SS-------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTT------------SCCS
T ss_pred CC-------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccC------------CcCH
Confidence 22 456788888877 6789999999977899999999999999998764211000 1122
Q ss_pred Cchhhcchhhh--ccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975 421 SDIRLVSKEAA--MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 473 (496)
Q Consensus 421 ~dI~~l~~~A~--~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~ 473 (496)
..+..+++.++ .+.+|++++.++.....+. ....|+.+|+..++....
T Consensus 222 ~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-----~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 222 EILSYIAAISAKEHGDARKAVNLLFRAAQLAS-----GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-----SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-----CCCccCHHHHHHHHHHHh
Confidence 22333333322 2444444444333322222 113489999999888764
No 54
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.64 E-value=1.3e-16 Score=161.09 Aligned_cols=168 Identities=21% Similarity=0.265 Sum_probs=111.1
Q ss_pred CCCCccchhh-c--chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975 210 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 283 (496)
Q Consensus 210 ~~~~~l~dli-G--~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s 283 (496)
.+..+|++++ | .......+...+..+. ..+++++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCcC----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3566788987 4 3445555555543321 134689999999999999999999998 8899999998
Q ss_pred cccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC
Q 010975 284 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 363 (496)
Q Consensus 284 ~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~ 363 (496)
++...+.+.........|.... ..+++|||||+|.+..+. .....++..++.....+ ..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~-----------~~~~~l~~~l~~~~~~~-~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTLYLLE-KQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-----------HHHHHHHHHHHHHHHCC-CeEEEEecCC
Confidence 8765544332222112222222 236899999999885321 11222333333222222 3456667777
Q ss_pred cc---cccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 364 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 364 p~---~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
+. .+++++.+||. ..+.+++ +.+++..+++..+....
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~ 183 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN 183 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcC
Confidence 76 58999999996 5688888 99999999999886543
No 55
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=6.1e-17 Score=174.52 Aligned_cols=182 Identities=17% Similarity=0.147 Sum_probs=118.5
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccC-ccccccc----cCccceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~-~~~~~~~----~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
..|.+++++.+|++++|.+++++.|.+++...... +..+... ..+++++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 45778888999999999999999999988652211 1111111 124578999999999999999999999999999
Q ss_pred eeecccccccccCChH-------HHHHHHHHHh-----hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975 279 NISASSVVSKWRGDSE-------KLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 346 (496)
Q Consensus 279 ~v~~s~l~~~~~G~~e-------~~l~~lf~~a-----~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 346 (496)
.+++++.......... ..+..+|..+ ....+.||||||+|.+....+ .....|+..++
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~----------~~l~~L~~~l~ 176 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----------GGVGQLAQFCR 176 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----------THHHHHHHHHH
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----------HHHHHHHHHHH
Confidence 9999876543211000 0011222222 124568999999999854311 11234444443
Q ss_pred CccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975 347 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 347 ~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
. ....+++++++.....+. ++.+|+ ..+.|+.|+.+++.++++..+...
T Consensus 177 ~---~~~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~ 225 (516)
T 1sxj_A 177 K---TSTPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIRE 225 (516)
T ss_dssp H---CSSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred h---cCCCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHc
Confidence 2 223355555444434444 355555 469999999999999998876543
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.63 E-value=8.2e-17 Score=160.82 Aligned_cols=206 Identities=22% Similarity=0.278 Sum_probs=133.5
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc---
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 289 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~--- 289 (496)
++++|++.+++.+...+....... .....+..+++|+||||||||++|+++|+.+ +.+++.++++.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 468999999999998885532110 0011233579999999999999999999998 5679999987664321
Q ss_pred --c-------CChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccC
Q 010975 290 --R-------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 352 (496)
Q Consensus 290 --~-------G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 352 (496)
. |.... ..+.........+||||||+|.+.. .+++.|+..++... ...
T Consensus 94 ~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp HHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred HhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 1 11110 1122222333448999999988732 23345555554321 111
Q ss_pred cEEEEEeccCC--------------------------cccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC----
Q 010975 353 ELVFVLAATNL--------------------------PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG---- 402 (496)
Q Consensus 353 ~~viVIatTn~--------------------------p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~---- 402 (496)
.++++|+|||. ...+++++++||+..+.+++|+.+++..|++.++.....
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 24668899998 446888999999988999999999999999998754311
Q ss_pred ---CC---CCCcceeeeccc--CCcCCchhhcchhhhccHHHHHH
Q 010975 403 ---EE---SLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLM 439 (496)
Q Consensus 403 ---~~---~~~l~~la~~t~--g~s~~dI~~l~~~A~~~a~rR~~ 439 (496)
.. +..++.+++..- ....++++.+++.+...++.+.+
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 10 111222333322 34567777778777776665544
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.62 E-value=1.8e-16 Score=151.28 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=104.3
Q ss_pred CCccchhhc---chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecccc
Q 010975 212 DVKWESIKG---LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 285 (496)
Q Consensus 212 ~~~l~dliG---~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l 285 (496)
..+|++++| .+.+.+.+...+..+ ..++++|+||||||||++|+++++++. .+++.+++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASGD------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHTC------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 467888886 246666666655431 236899999999999999999999884 67888888776
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 365 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~ 365 (496)
....... +.. ...+.+|+|||+|.+.... .....++..++.........+|++++..+.
T Consensus 92 ~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~-----------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 92 ASISTAL--------LEG--LEQFDLICIDDVDAVAGHP-----------LWEEAIFDLYNRVAEQKRGSLIVSASASPM 150 (242)
T ss_dssp GGSCGGG--------GTT--GGGSSEEEEETGGGGTTCH-----------HHHHHHHHHHHHHHHHCSCEEEEEESSCTT
T ss_pred HHHHHHH--------HHh--ccCCCEEEEeccccccCCH-----------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHH
Confidence 5543211 111 1346899999999874321 012234444433222222224444444443
Q ss_pred ---cccHHHHHHhh--hhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 366 ---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 366 ---~Ld~aL~rRf~--~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
.+++++.+||. ..+.++.|+.+++.++++.++....
T Consensus 151 ~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~ 191 (242)
T 3bos_A 151 EAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG 191 (242)
T ss_dssp TTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT
T ss_pred HHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC
Confidence 45689999996 6799999999999999999876443
No 58
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.62 E-value=3.2e-16 Score=161.76 Aligned_cols=180 Identities=21% Similarity=0.326 Sum_probs=113.8
Q ss_pred chhhcchHHHHHHhhhhcccccCccc------------------cccccCccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 277 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~------------------~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~ 277 (496)
+.|+|++++|+.|...+..+...... ......++.++||+||||||||++|+++|+.++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 35899999999999887432222111 011123456899999999999999999999999999
Q ss_pred eeeeccccc-ccccCCh-HHHHHHHHHHhh----hcCCcceehhhHHHHHhhhcCCcchhHH-hhhhhhhhhhhccCccc
Q 010975 278 FNISASSVV-SKWRGDS-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ 350 (496)
Q Consensus 278 i~v~~s~l~-~~~~G~~-e~~l~~lf~~a~----~~~p~ILfIDEID~L~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~~ 350 (496)
+.+++..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.......+. ...+++.|+..|++...
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3455543 445556655432 2356899999999997663322111111 12366778888874310
Q ss_pred ------------------cCcEEEEEeccCC-----------------------------------------cccccHHH
Q 010975 351 ------------------SDELVFVLAATNL-----------------------------------------PWELDAAM 371 (496)
Q Consensus 351 ------------------~~~~viVIatTn~-----------------------------------------p~~Ld~aL 371 (496)
...++++|+++|. ...+.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 0123456666652 11256888
Q ss_pred HHHhhhhhcccCCCHHHHHHHHHh
Q 010975 372 LRRLEKRILVPLPDTEARRAMFES 395 (496)
Q Consensus 372 ~rRf~~~I~~~~P~~eeR~~Il~~ 395 (496)
.+||+.++.+++++.++...|+..
T Consensus 261 ~~R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 261 IGRLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHS
T ss_pred hcCCCceeeccCCCHHHHHHHHhh
Confidence 889988899999999999999874
No 59
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=1.3e-16 Score=181.64 Aligned_cols=178 Identities=20% Similarity=0.322 Sum_probs=122.2
Q ss_pred HHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh------
Q 010975 200 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------ 273 (496)
Q Consensus 200 ~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l------ 273 (496)
++...++.....+.++++++|.++.++++.+.+... ..++++|+||||||||++|+++|+.+
T Consensus 154 ~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~------------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p 221 (854)
T 1qvr_A 154 EQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVP 221 (854)
T ss_dssp HHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCS------------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcC------------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCc
Confidence 344556666667788999999999999999877442 23689999999999999999999988
Q ss_pred ----cceeeeeeccccc--ccccCChHHHHHHHHHHhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc
Q 010975 274 ----KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 346 (496)
Q Consensus 274 ----~~~~i~v~~s~l~--~~~~G~~e~~l~~lf~~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 346 (496)
+.+++.++++.+. ..+.|+.+..++.++..+... .|+||||||+|.+.+..... +. ..+.+.|...++
T Consensus 222 ~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-g~----~~~~~~L~~~l~ 296 (854)
T 1qvr_A 222 EGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-GA----VDAGNMLKPALA 296 (854)
T ss_dssp TTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH
T ss_pred hhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc-ch----HHHHHHHHHHHh
Confidence 7899999998887 468889999999999988864 67899999999997653321 11 112223333332
Q ss_pred CccccCcEEEEEeccCCcc----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975 347 GLTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 347 ~~~~~~~~viVIatTn~p~----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
. ..+.+|++||.++ .+++++.+||+. +.++.|+.+++..|++.++..+
T Consensus 297 ----~-~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~ 348 (854)
T 1qvr_A 297 ----R-GELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKY 348 (854)
T ss_dssp ----T-TCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHH
T ss_pred ----C-CCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhh
Confidence 2 2355777887764 478999999986 9999999999999998776543
No 60
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=8e-16 Score=153.99 Aligned_cols=167 Identities=21% Similarity=0.205 Sum_probs=117.6
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-----ceee
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFF 278 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-----~~~i 278 (496)
..+.+++++.+|++++|++++++.|...+... ...++||+||||||||++|+++++.+. ..++
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~ 80 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFL 80 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceE
Confidence 35667788889999999999999999877532 123699999999999999999999873 3477
Q ss_pred eeecccccccccCChHHHHHHHHHHh--hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEE
Q 010975 279 NISASSVVSKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 356 (496)
Q Consensus 279 ~v~~s~l~~~~~G~~e~~l~~lf~~a--~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 356 (496)
.+++++..+. ......+....... ....+.||+|||+|.+... ..+.|+..++. ....+.
T Consensus 81 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~ 142 (327)
T 1iqp_A 81 ELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEM---FSSNVR 142 (327)
T ss_dssp EEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTTEE
T ss_pred EeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCe
Confidence 7776554221 11112222222111 1134679999999987322 23445555552 223356
Q ss_pred EEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 357 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 357 VIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
+|++||.+..+.+++.+|+. .+.+++|+.++...+++..+....
T Consensus 143 ~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (327)
T 1iqp_A 143 FILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEG 186 (327)
T ss_dssp EEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred EEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcC
Confidence 77788999999999999997 589999999999999998876543
No 61
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.59 E-value=2.4e-16 Score=159.62 Aligned_cols=157 Identities=21% Similarity=0.219 Sum_probs=106.9
Q ss_pred CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc------c
Q 010975 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------V 285 (496)
Q Consensus 212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~------l 285 (496)
+..+++++|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.. +
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 33468899999999998877643 258999999999999999999999999999888731 2
Q ss_pred cccccCChHHHHHHHHHHhhhcC---CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC-------c-cccCcE
Q 010975 286 VSKWRGDSEKLIKVLFELARHHA---PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------L-TQSDEL 354 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~---p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~-------~-~~~~~~ 354 (496)
.+........ ..+ ..... .+||||||+|.+... ..+.|+..++. . ...+..
T Consensus 89 ~g~~~~~~~~---~~~--~~~~g~l~~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~ 150 (331)
T 2r44_A 89 IGTMIYNQHK---GNF--EVKKGPVFSNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNP 150 (331)
T ss_dssp HEEEEEETTT---TEE--EEEECTTCSSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSS
T ss_pred CCceeecCCC---Cce--EeccCcccccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCC
Confidence 2111100000 000 00111 269999999986432 22333333331 1 112334
Q ss_pred EEEEeccCCcc-----cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975 355 VFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 355 viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
++||+|+|..+ .+++++++||...+.++.|+.+++.+|++..+...
T Consensus 151 ~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 151 FLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp CEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred EEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccC
Confidence 66778888543 38999999998789999999999999999887653
No 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=9.2e-16 Score=153.29 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=116.1
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeee
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 280 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v 280 (496)
+..++++..|++++|++.+++.|.+.+... .. .+++|+||||+|||++|+++++.+ +..++.+
T Consensus 11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 78 (323)
T 1sxj_B 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDG-----------NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 78 (323)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHHSC-----------CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred HHHhcCCCCHHHHHCCHHHHHHHHHHHHcC-----------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence 455677888999999999999999887431 11 349999999999999999999986 4557777
Q ss_pred ecccccccccCChHHHHHHHHHHhh-------hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975 281 SASSVVSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 353 (496)
Q Consensus 281 ~~s~l~~~~~G~~e~~l~~lf~~a~-------~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 353 (496)
++++.. ....++.++.... ...+.||+|||+|.+... ..+.|+..++. ...
T Consensus 79 ~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~---~~~ 136 (323)
T 1sxj_B 79 NASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMEL---YSN 136 (323)
T ss_dssp CTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHH---TTT
T ss_pred cCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------------HHHHHHHHHhc---cCC
Confidence 766532 1234444444333 223679999999987422 13445555552 223
Q ss_pred EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCC
Q 010975 354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 399 (496)
Q Consensus 354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~ 399 (496)
.+.+|.+||.+..+.+++++|+. .+.+++|+.++..++++..+..
T Consensus 137 ~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 137 STRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred CceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHH
Confidence 35566778888899999999996 5999999999999999987654
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=4.3e-15 Score=151.52 Aligned_cols=168 Identities=20% Similarity=0.233 Sum_probs=116.3
Q ss_pred CCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh------cceeeeeecccc
Q 010975 212 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSV 285 (496)
Q Consensus 212 ~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l------~~~~i~v~~s~l 285 (496)
....++++|.++.++.|.+.+...... ..+.+++|+||||||||++++++++.+ +.+++.+++...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~--------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYRE--------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGT--------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 344578999999999999887543221 234689999999999999999999988 788999987543
Q ss_pred ccc----------------ccCC-hHHHHHHHHHHhhhc-CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccC
Q 010975 286 VSK----------------WRGD-SEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 347 (496)
Q Consensus 286 ~~~----------------~~G~-~e~~l~~lf~~a~~~-~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 347 (496)
... ..+. .......++...... .|.||+|||+|.+..... ..+...++..++.
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~~ 158 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINSE 158 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchhh
Confidence 210 1121 223344444444433 378999999999964421 1233445555543
Q ss_pred ccccCcEEEEEeccCCc---ccccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCC
Q 010975 348 LTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 348 ~~~~~~~viVIatTn~p---~~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~ 398 (496)
. ....+.+|++|+.+ ..+++.+.+||.. .+.+++++.++..++++..+.
T Consensus 159 ~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 159 V--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp C--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred c--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 3 23456777788876 4678899999853 799999999999999998664
No 64
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.57 E-value=4.8e-16 Score=157.66 Aligned_cols=163 Identities=22% Similarity=0.259 Sum_probs=99.8
Q ss_pred CCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceee----eeeccc
Q 010975 209 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF----NISASS 284 (496)
Q Consensus 209 ~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i----~v~~s~ 284 (496)
..++.+|++++|.+++++.+......+ ...++||+||||||||++|+++++.++.... .+++..
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 346678999999999887755443221 2257999999999999999999998863110 011111
Q ss_pred ccc---------------------cccCChHHHH------HHHHHHhh---------hcCCcceehhhHHHHHhhhcCCc
Q 010975 285 VVS---------------------KWRGDSEKLI------KVLFELAR---------HHAPSTIFLDEIDAIISQRGEAR 328 (496)
Q Consensus 285 l~~---------------------~~~G~~e~~l------~~lf~~a~---------~~~p~ILfIDEID~L~~~r~~~~ 328 (496)
... ...+.....+ ...+.... ...++||||||+|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~----- 159 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH----- 159 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-----
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-----
Confidence 100 0011111111 11121110 112579999999987433
Q ss_pred chhHHhhhhhhhhhhhccC----------ccccCcEEEEEeccCCcc-cccHHHHHHhhhhhcccCC-CHHHHHHHHHhh
Q 010975 329 SEHEASRRLKTELLIQMDG----------LTQSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRAMFESL 396 (496)
Q Consensus 329 ~~~~~~~~i~~~Ll~~ld~----------~~~~~~~viVIatTn~p~-~Ld~aL~rRf~~~I~~~~P-~~eeR~~Il~~~ 396 (496)
.++.|+..++. .......+++|+|||... .+++++++||+..+.++.| +.+++.+|++..
T Consensus 160 --------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 160 --------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp --------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence 22334443331 011123578899999754 7999999999888999998 677777888764
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.56 E-value=9.3e-16 Score=150.38 Aligned_cols=201 Identities=22% Similarity=0.194 Sum_probs=118.0
Q ss_pred CccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecccccccc
Q 010975 213 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKW 289 (496)
Q Consensus 213 ~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l~~~~ 289 (496)
.+|++++|.+..++.+.+.+..... ...++||+||||||||++|+++++.+. .+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 3588999999999988877654322 236899999999999999999999884 689999998763321
Q ss_pred -----cCChH----HH---HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCc--------c
Q 010975 290 -----RGDSE----KL---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------T 349 (496)
Q Consensus 290 -----~G~~e----~~---l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~ 349 (496)
.|... +. ....+..+ .+++|||||+|.+... .+..|+..++.. .
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC--
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCcc
Confidence 11100 00 01123333 2479999999987432 223344444321 1
Q ss_pred ccCcEEEEEeccCCc-c------cccHHHHHHhhhhhcccCCCHHHH----HHHHHhhCCCCCCCCCCCcceeeecccCC
Q 010975 350 QSDELVFVLAATNLP-W------ELDAAMLRRLEKRILVPLPDTEAR----RAMFESLLPSQTGEESLPYDLLVERTEGY 418 (496)
Q Consensus 350 ~~~~~viVIatTn~p-~------~Ld~aL~rRf~~~I~~~~P~~eeR----~~Il~~~l~~~~~~~~~~l~~la~~t~g~ 418 (496)
.....+.+|+|||.+ . .+.++|.+||.. +.+..|+..+| ..++++++.......+.. ....+
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~------~~~~~ 209 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLP------LFPGF 209 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCS------SCCCB
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCC------cccCc
Confidence 112346688888875 2 367899999964 55556655544 445555443211110000 00235
Q ss_pred cCCchhhcchhhhccHHHHHHHHhhccc
Q 010975 419 SGSDIRLVSKEAAMQPLRRLMVLLEGRQ 446 (496)
Q Consensus 419 s~~dI~~l~~~A~~~a~rR~~~~le~~~ 446 (496)
+...+..+.+..|.+++|++.+.++...
T Consensus 210 ~~~a~~~L~~~~~~gn~reL~~~l~~~~ 237 (265)
T 2bjv_A 210 TERARETLLNYRWPGNIRELKNVVERSV 237 (265)
T ss_dssp CHHHHHHHHHSCCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 5666777777888888888777666543
No 66
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.56 E-value=2.2e-16 Score=159.09 Aligned_cols=214 Identities=19% Similarity=0.253 Sum_probs=133.4
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 288 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~---- 288 (496)
++++|.+...+.+.+.+.... ....+|||+||||||||++|+++++.+ +.+|+.++|+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468899998888888775432 234689999999999999999999966 678999999876431
Q ss_pred -ccC----ChHH---HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccC
Q 010975 289 -WRG----DSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 352 (496)
Q Consensus 289 -~~G----~~e~---~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 352 (496)
..| .... .....|..+. .++|||||||.+... .+..|+..++... ...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCccccc
Confidence 111 1111 1122344444 379999999987432 2233444444221 123
Q ss_pred cEEEEEeccCCc-c------cccHHHHHHhhhhhcccCCCHHHHH----HHHHhhCCCCCCCCCCCcceeeecccCCcCC
Q 010975 353 ELVFVLAATNLP-W------ELDAAMLRRLEKRILVPLPDTEARR----AMFESLLPSQTGEESLPYDLLVERTEGYSGS 421 (496)
Q Consensus 353 ~~viVIatTn~p-~------~Ld~aL~rRf~~~I~~~~P~~eeR~----~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~ 421 (496)
..+.||++||.+ . .+++.|..||.. +.+..|+..+|. .++++++........ .....++..
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~-~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~-------~~~~~~s~~ 207 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLNV-VAIEMPSLRQRREDIPLLADHFLRRFAERNR-------KVVKGFTPQ 207 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHSS-EEEECCCSGGGGGGHHHHHHHHHHHHHHHTT-------CCCCCBCHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcCe-eEEeccCHHHhHhhHHHHHHHHHHHHHHHhc-------cCccCCCHH
Confidence 346788888876 1 256788999963 666666655554 456555532211100 112246667
Q ss_pred chhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975 422 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 469 (496)
Q Consensus 422 dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al 469 (496)
.+..+.+..|.+++|++.+.++........ ..|+.+|+...+
T Consensus 208 a~~~L~~~~wpGnvReL~~~l~~~~~~~~~------~~i~~~~l~~~~ 249 (304)
T 1ojl_A 208 AMDLLIHYDWPGNIRELENAIERAVVLLTG------EYISERELPLAI 249 (304)
T ss_dssp HHHHHHHCCCSSHHHHHHHHHHHHHHHCCS------SSBCGGGSCGGG
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHhCCC------CcccHHhhhhhh
Confidence 778888888999999888877765443322 125666664433
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.54 E-value=1.6e-15 Score=170.44 Aligned_cols=202 Identities=17% Similarity=0.198 Sum_probs=132.3
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCC
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD 292 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~ 292 (496)
++++|++.+++.+.+.+....... .....+..++||+||||||||++|+++|+.+ +.+++.++++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 468999999999988886432111 0011233479999999999999999999998 6789999999998776554
Q ss_pred hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------ccCcEEEEEeccCCc
Q 010975 293 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP 364 (496)
Q Consensus 293 ~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIatTn~p 364 (496)
.. .+....+...++||||||||.+. ..+++.|+..++.-. ....+++||+|||.+
T Consensus 568 -~~---~l~~~~~~~~~~vl~lDEi~~~~-------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 -GG---QLTEKVRRKPYSVVLLDAIEKAH-------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSC-------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred -cc---hhhHHHHhCCCeEEEEeCccccC-------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 12 22333444556899999998763 234455666665321 123346788999965
Q ss_pred cc------------ccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC-------CCC---CCCcceeeec--ccCCcC
Q 010975 365 WE------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT-------GEE---SLPYDLLVER--TEGYSG 420 (496)
Q Consensus 365 ~~------------Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~-------~~~---~~~l~~la~~--t~g~s~ 420 (496)
.. +.+++++||+.++.|++|+.+++..|++.++.... ... +..++.+++. ...+..
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 710 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGA 710 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTT
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCC
Confidence 32 78899999988999999999999999988774421 110 0112223332 223345
Q ss_pred CchhhcchhhhccHHHH
Q 010975 421 SDIRLVSKEAAMQPLRR 437 (496)
Q Consensus 421 ~dI~~l~~~A~~~a~rR 437 (496)
++++.+++++....+.+
T Consensus 711 R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 711 RPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp TTHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66666666666655554
No 68
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.3e-15 Score=152.39 Aligned_cols=159 Identities=10% Similarity=0.066 Sum_probs=116.7
Q ss_pred hhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----------cceeeeeecccccc
Q 010975 218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVVS 287 (496)
Q Consensus 218 liG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----------~~~~i~v~~s~l~~ 287 (496)
|.|.++..+.|...+...+.. ..+.+++|+||||||||++++++++++ +..+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~--------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS--------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 889999999988877554432 245789999999999999999999998 35788999866543
Q ss_pred c----------c------cCChHHHHHHHHHHh--hhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc
Q 010975 288 K----------W------RGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 349 (496)
Q Consensus 288 ~----------~------~G~~e~~l~~lf~~a--~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 349 (496)
. . .+.....+..+|... ....+.|++|||+|.+. . +.++..|+.+..
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~--- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWIS--- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhccc---
Confidence 2 1 234566778888875 34556899999999985 1 223333433322
Q ss_pred ccCcEEEEEeccCCccc----ccHHHHHHhh-hhhcccCCCHHHHHHHHHhhCCC
Q 010975 350 QSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPS 399 (496)
Q Consensus 350 ~~~~~viVIatTn~p~~----Ld~aL~rRf~-~~I~~~~P~~eeR~~Il~~~l~~ 399 (496)
....+++||+++|..+. +++++++||. .++.|++|+.++..+|++..+..
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 23456788888888753 5667788996 57999999999999999998865
No 69
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.54 E-value=4e-15 Score=151.98 Aligned_cols=161 Identities=21% Similarity=0.257 Sum_probs=113.9
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce---------
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 276 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~--------- 276 (496)
+.+++.+..|++++|++++++.|...+... ..++.+||+||||||||++|+++++.++..
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 74 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCS
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 455677888999999999999999887432 123468999999999999999999988542
Q ss_pred ---------------eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhh
Q 010975 277 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 337 (496)
Q Consensus 277 ---------------~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i 337 (496)
++.++... ......++.+++.+.. ..+.||+|||+|.+.. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~ 135 (373)
T 1jr3_A 75 VCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HS 135 (373)
T ss_dssp SSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-------------HH
T ss_pred ccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-------------HH
Confidence 12222111 0111234555555542 3457999999988732 12
Q ss_pred hhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975 338 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 338 ~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
.+.|+..++. ....+++|++|+.+..+.+++++|+ ..+.++.|+.++...+++.++...
T Consensus 136 ~~~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~ 194 (373)
T 1jr3_A 136 FNALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEE 194 (373)
T ss_dssp HHHHHHHHHS---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 3456666653 2334667777888888999999998 459999999999999999887544
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=1.3e-14 Score=148.72 Aligned_cols=165 Identities=14% Similarity=0.084 Sum_probs=112.9
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccc--eeeeeCCCCChhHHHHHHHHhhh----cceeeeeecccccc
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK--GILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS 287 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~--~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s~l~~ 287 (496)
..++++|.++.++.|.+.+...... ..+. +++|+||||||||++++++++.+ +.+++.+++.....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 3478999999999999887543221 1223 79999999999999999999988 57888888765432
Q ss_pred c----------------ccCC-hHHHHHHHHHHhhh-cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc
Q 010975 288 K----------------WRGD-SEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 349 (496)
Q Consensus 288 ~----------------~~G~-~e~~l~~lf~~a~~-~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 349 (496)
. ..+. .......+...... ..|.||+|||+|.+. ......|+..++...
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQEAD 153 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------HHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------hHHHHHHHHHHHhCC
Confidence 1 0111 12222233222222 347799999998871 223345555554332
Q ss_pred cc-CcEEEEEeccCCc---ccccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCCC
Q 010975 350 QS-DELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPS 399 (496)
Q Consensus 350 ~~-~~~viVIatTn~p---~~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~~ 399 (496)
.. ...+.||++||.+ ..+++.+.+||.. .+.+++++.++..++++..+..
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 10 1356777888887 5688999999975 7999999999999999887653
No 71
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.52 E-value=8.3e-15 Score=149.16 Aligned_cols=221 Identities=17% Similarity=0.158 Sum_probs=135.4
Q ss_pred hhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 206 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 206 ~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
+.+...+.+|++++|.+.+++.+...+...... ..++.+++|+||||+||||+++++|+.++.++...++..+
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 445556678999999999999888766432111 1233679999999999999999999999988776655433
Q ss_pred cccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc---------------c
Q 010975 286 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------Q 350 (496)
Q Consensus 286 ~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~ 350 (496)
. ....+..++... ..+.|+||||++.+.... .+.++..++... .
T Consensus 88 ~------~~~~l~~~~~~~--~~~~v~~iDE~~~l~~~~-------------~e~L~~~~~~~~~~i~~~~~~~~~~i~~ 146 (334)
T 1in4_A 88 V------KQGDMAAILTSL--ERGDVLFIDEIHRLNKAV-------------EELLYSAIEDFQIDIMIGKGPSAKSIRI 146 (334)
T ss_dssp C------SHHHHHHHHHHC--CTTCEEEEETGGGCCHHH-------------HHHHHHHHHTSCCCC-------------
T ss_pred c------CHHHHHHHHHHc--cCCCEEEEcchhhcCHHH-------------HHHHHHHHHhcccceeeccCcccccccc
Confidence 2 122233333322 234799999999874321 111221111100 0
Q ss_pred cCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCC-CCcceeeecccCCcCCchhhcchh
Q 010975 351 SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKE 429 (496)
Q Consensus 351 ~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s~~dI~~l~~~ 429 (496)
....+.++++|+.+..+++++++||...+.+++|+.+++.++++..........+ .....+++.+.|.. +++..+++.
T Consensus 147 ~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~ 225 (334)
T 1in4_A 147 DIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKR 225 (334)
T ss_dssp --CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHH
T ss_pred cCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHH
Confidence 1123456678899999999999999877899999999999999988754333221 12344555555432 333333333
Q ss_pred hhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCC
Q 010975 430 AAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 473 (496)
Q Consensus 430 A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~ 473 (496)
+...+.. ++ ...||.+++.+++....
T Consensus 226 ~~~~a~~------~~------------~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 226 VRDMLTV------VK------------ADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHH------HT------------CSSBCHHHHHHHHHHHT
T ss_pred HHHHHHH------cC------------CCCcCHHHHHHHHHHhC
Confidence 3221111 10 12377788888777654
No 72
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=1.5e-14 Score=147.23 Aligned_cols=217 Identities=19% Similarity=0.211 Sum_probs=139.1
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc-----ceeee
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN 279 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~-----~~~i~ 279 (496)
.|.+++++.+|++++|++++++.|...+... .. .+++|+||||||||++|+++|+.+. ..+..
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g-----------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEG-----------KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT-----------CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhcC-----------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 4677788889999999999999998877431 11 3599999999999999999999873 34566
Q ss_pred eecccccccccCChHHHHHHHHHHhhh------cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCc
Q 010975 280 ISASSVVSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 353 (496)
Q Consensus 280 v~~s~l~~~~~G~~e~~l~~lf~~a~~------~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 353 (496)
+++++.. + ...++..+..... ..+.|++|||+|.+... ..+.|+..++.. ..
T Consensus 82 ~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~---~~ 139 (340)
T 1sxj_C 82 LNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERY---TK 139 (340)
T ss_dssp ECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TT
T ss_pred EcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhcC---CC
Confidence 6655421 1 2233333322221 23579999999987322 234566666532 22
Q ss_pred EEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhcc
Q 010975 354 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQ 433 (496)
Q Consensus 354 ~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~ 433 (496)
.+.+|.+||.+..+.+++++|+. .+.++.++.++..+++...+...... ++...+ ..+.+.+.+
T Consensus 140 ~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~--------------i~~~~~-~~i~~~s~G 203 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLK--------------LSPNAE-KALIELSNG 203 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCC--------------BCHHHH-HHHHHHHTT
T ss_pred CeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCC--------------CCHHHH-HHHHHHcCC
Confidence 34456678999999999999997 48899999999998888877443221 111122 222334455
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHhhcCCC
Q 010975 434 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 474 (496)
Q Consensus 434 a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al~~~~P 474 (496)
.+|++++.++........ .....||.+++..++....+
T Consensus 204 ~~r~~~~~l~~~~~~~~~---~~~~~it~~~v~~~~~~~~~ 241 (340)
T 1sxj_C 204 DMRRVLNVLQSCKATLDN---PDEDEISDDVIYECCGAPRP 241 (340)
T ss_dssp CHHHHHHHTTTTTTTTCS---SSCCCBCHHHHHHHTTCCCH
T ss_pred CHHHHHHHHHHHHHhcCC---cccccccHHHHHHHhCCCCH
Confidence 666666666533221111 01124888888887776544
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=5.1e-15 Score=150.62 Aligned_cols=163 Identities=15% Similarity=0.203 Sum_probs=109.7
Q ss_pred hhhhCCCCCccchhhcchHHHHHHhhhh-cccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc--------
Q 010975 205 DIIRGSPDVKWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------- 275 (496)
Q Consensus 205 ~~~~~~~~~~l~dliG~e~vk~~L~e~l-~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~-------- 275 (496)
.|.+++++.+|++++|++++++.+...+ ... .. .+++|+||||+||||+++++++++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~-----------~~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~ 70 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPR-----------DL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTT-----------CC-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCC-----------CC-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEe
Confidence 4678889999999999999999998877 321 11 24999999999999999999996511
Q ss_pred ---------------------eeeeeecccccccccCChHHHHHHHHHHhh--------------hcCCcceehhhHHHH
Q 010975 276 ---------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR--------------HHAPSTIFLDEIDAI 320 (496)
Q Consensus 276 ---------------------~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~--------------~~~p~ILfIDEID~L 320 (496)
.++.++.++.. ......++..++.+. ...|.||+|||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L 146 (354)
T 1sxj_E 71 DVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL 146 (354)
T ss_dssp ---------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS
T ss_pred cceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc
Confidence 11222221110 001112444444332 125679999999875
Q ss_pred HhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCC
Q 010975 321 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 400 (496)
Q Consensus 321 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~ 400 (496)
.. ...+.|+..++... ..+.+|.+|+.+..+.+++++|+ ..+.+++|+.++...+++..+...
T Consensus 147 ~~-------------~~~~~L~~~le~~~---~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~ 209 (354)
T 1sxj_E 147 TK-------------DAQAALRRTMEKYS---KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNE 209 (354)
T ss_dssp CH-------------HHHHHHHHHHHHST---TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CH-------------HHHHHHHHHHHhhc---CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHc
Confidence 21 12344555555322 23556778888888999999999 559999999999999999887543
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.51 E-value=6.9e-15 Score=165.25 Aligned_cols=203 Identities=19% Similarity=0.233 Sum_probs=133.3
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccccc--------
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-------- 288 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~-------- 288 (496)
+++|++++++.+...+...... ......+..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g 535 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence 4788888888887766432110 00001233579999999999999999999999999999999887543
Q ss_pred ----ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc--------cCcEEE
Q 010975 289 ----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELVF 356 (496)
Q Consensus 289 ----~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~~~~vi 356 (496)
|+|..+. ..+....+...++||||||||.+. ..+++.|+..++.-.. ...+++
T Consensus 536 ~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~-------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 536 APPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-------------PDVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp CCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC-------------HHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred CCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC-------------HHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 2221111 123334444556899999998763 2345667776663211 113477
Q ss_pred EEeccCCcc-------------------------cccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC-------C-
Q 010975 357 VLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG-------E- 403 (496)
Q Consensus 357 VIatTn~p~-------------------------~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~-------~- 403 (496)
||+|||.+. .+++++++||+.++.|++|+.+++..|++.++..... .
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 680 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL 680 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 899999743 5788999999888999999999999999988753210 0
Q ss_pred --CCCCcceeeec--ccCCcCCchhhcchhhhccHHHH
Q 010975 404 --ESLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 437 (496)
Q Consensus 404 --~~~~l~~la~~--t~g~s~~dI~~l~~~A~~~a~rR 437 (496)
.+..++.+++. ...+..+.+..+++.+....+.+
T Consensus 681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 01112223332 22344677777777776665554
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.48 E-value=2e-14 Score=128.70 Aligned_cols=132 Identities=11% Similarity=0.122 Sum_probs=90.3
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCCh
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 293 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~ 293 (496)
+++|.+...+++.+.+.... ....+|||+||||||||++|+++++.. +.+|+ ++++.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 57898888888888775432 223679999999999999999999987 77899 999877554
Q ss_pred HHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc-------c
Q 010975 294 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-------E 366 (496)
Q Consensus 294 e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~-------~ 366 (496)
......+..+.. ++|||||+|.+... .+..|+..+.. ....+.+|+|||.+. .
T Consensus 66 -~~~~~~~~~a~~---g~l~ldei~~l~~~-------------~q~~Ll~~l~~---~~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 66 -PQLNDFIALAQG---GTLVLSHPEHLTRE-------------QQYHLVQLQSQ---EHRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp -SCHHHHHHHHTT---SCEEEECGGGSCHH-------------HHHHHHHHHHS---SSCSSCEEEEESSCHHHHHHHSC
T ss_pred -hhhhcHHHHcCC---cEEEEcChHHCCHH-------------HHHHHHHHHhh---cCCCEEEEEECCcCHHHHHHcCC
Confidence 223445555543 89999999987432 23345555532 223355777888652 3
Q ss_pred ccHHHHHHhhhhhcccCCC
Q 010975 367 LDAAMLRRLEKRILVPLPD 385 (496)
Q Consensus 367 Ld~aL~rRf~~~I~~~~P~ 385 (496)
+.+.+..|+.. +.+..|.
T Consensus 126 ~~~~L~~rl~~-~~i~lPp 143 (145)
T 3n70_A 126 IIAELYYCFAM-TQIACLP 143 (145)
T ss_dssp CCHHHHHHHHH-HEEECCC
T ss_pred CCHHHHHHhcC-CEEeCCC
Confidence 66788888864 5555554
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.48 E-value=1.6e-14 Score=154.79 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=96.8
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcc--eeeeeec-----cccccc
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISA-----SSVVSK 288 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~--~~i~v~~-----s~l~~~ 288 (496)
..++|.+++++.+...+.. ..++||+||||||||++|+++|+.++. ++..+++ +++.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4589999999988776632 258999999999999999999998843 4444443 233332
Q ss_pred ccCChHHHHHHHHHHhhhc---CCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc-------CccccCcEEEEE
Q 010975 289 WRGDSEKLIKVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD-------GLTQSDELVFVL 358 (496)
Q Consensus 289 ~~G~~e~~l~~lf~~a~~~---~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld-------~~~~~~~~viVI 358 (496)
+.+..... ...+..+... .++|||||||+.+.+ .+.+.|+..|+ +........++|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~-------------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP-------------AILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCCH-------------HHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH-------------HHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 22221111 1222222221 457999999976432 23344555553 222222222456
Q ss_pred eccCCccc---ccHHHHHHhhhhhcccCCCH-HHHHHHHHhhCC
Q 010975 359 AATNLPWE---LDAAMLRRLEKRILVPLPDT-EARRAMFESLLP 398 (496)
Q Consensus 359 atTn~p~~---Ld~aL~rRf~~~I~~~~P~~-eeR~~Il~~~l~ 398 (496)
+|||.+.. ..+++++||...+.+++|+. +++..|++....
T Consensus 154 ~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 154 AASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp EEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred hccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 67775422 45799999988899999987 778899987654
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=6.5e-15 Score=161.27 Aligned_cols=167 Identities=21% Similarity=0.233 Sum_probs=104.5
Q ss_pred chhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee----eccccccccc-
Q 010975 216 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR- 290 (496)
Q Consensus 216 ~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v----~~s~l~~~~~- 290 (496)
..++|++++|+.+...+....... ..........++||+||||||||++|+++|+.++..++.. ++.++.+...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~-~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKV-LEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEE-TTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCCccc-ccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 369999999998876554321100 0001123334899999999999999999999998776553 2333333221
Q ss_pred ----CChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc----------ccCcEEE
Q 010975 291 ----GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVF 356 (496)
Q Consensus 291 ----G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~vi 356 (496)
|..... ...+..+. .+|+||||||.+... ..+.|+..|+.-. ..+.++.
T Consensus 374 ~~~~g~~~~~-~G~l~~A~---~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 374 EKGTGEYYLE-AGALVLAD---GGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp GGGTSSCSEE-ECHHHHHS---SSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred cccccccccc-CCeeEecC---CCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 111000 01222332 379999999987332 2344555554221 1234577
Q ss_pred EEeccCCcc-------------cccHHHHHHhhh-hhcccCCCHHHHHHHHHhhCCCCC
Q 010975 357 VLAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 357 VIatTn~p~-------------~Ld~aL~rRf~~-~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
||+|||.++ .+++++++||+. .+..+.|+.+ ...|+++.+....
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~ 494 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHS 494 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTC
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhh
Confidence 999999886 799999999974 4455667777 8888888776543
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.45 E-value=3.2e-14 Score=162.05 Aligned_cols=207 Identities=23% Similarity=0.284 Sum_probs=134.5
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc---
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 288 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~--- 288 (496)
+++++|++.+++.+...+....... .....+..++||+||||||||++|+++|+.+ +.+++.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~---~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGC---SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 3578999999999988875432100 0001233579999999999999999999999 789999999876543
Q ss_pred ---------ccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCcc--------cc
Q 010975 289 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QS 351 (496)
Q Consensus 289 ---------~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~ 351 (496)
|+|..+ ...+....+...++||||||+|.+. ..+++.|+..++.-. ..
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~g~~vd 698 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH-------------PDVFNILLQILDDGRLTDSHGRTVD 698 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC-------------HHHHHHHHHHHTTTEECCSSSCCEE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC-------------HHHHHHHHHHhccCceECCCCCEec
Confidence 222221 1223333444456899999998763 235566777776331 11
Q ss_pred CcEEEEEeccCCc--------------------------ccccHHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCCC---
Q 010975 352 DELVFVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG--- 402 (496)
Q Consensus 352 ~~~viVIatTn~p--------------------------~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~~--- 402 (496)
-.+++||+|||.. ..+.++|++||+.++.+.+|+.++...|++.++.....
T Consensus 699 ~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~ 778 (854)
T 1qvr_A 699 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA 778 (854)
T ss_dssp CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2357789999972 12567888999888999999999999999888753211
Q ss_pred ----C---CCCCcceeeeccc--CCcCCchhhcchhhhccHHHHHH
Q 010975 403 ----E---ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLM 439 (496)
Q Consensus 403 ----~---~~~~l~~la~~t~--g~s~~dI~~l~~~A~~~a~rR~~ 439 (496)
. .+..++.++...- .+..++++.+++.+...++.+.+
T Consensus 779 ~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 779 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp TTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred hCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 0 0111223444332 45567777777777777666543
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.44 E-value=8.4e-15 Score=130.91 Aligned_cols=132 Identities=12% Similarity=0.140 Sum_probs=88.3
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHH
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 296 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~ 296 (496)
+++|.+..++++.+.+.... ....+|+|+||||||||++|+++++..+ +++.++++++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 58899999998888875432 2236799999999999999999999988 99999998875433
Q ss_pred HHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc-cc----ccHHH
Q 010975 297 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAM 371 (496)
Q Consensus 297 l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p-~~----Ld~aL 371 (496)
...+++.+. +++|||||+|.+... .+..|+..++... ...+.+|+|||.+ .. +++.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~-------------~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRN-------------IQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHH-------------HHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHH-------------HHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHH
Confidence 455566555 379999999987432 2233455554221 2235577777755 33 55666
Q ss_pred HHHhhhhhcccCCC
Q 010975 372 LRRLEKRILVPLPD 385 (496)
Q Consensus 372 ~rRf~~~I~~~~P~ 385 (496)
..|+.. +.+..|.
T Consensus 129 ~~rl~~-~~i~lPp 141 (143)
T 3co5_A 129 AGLFSE-SVVRIPP 141 (143)
T ss_dssp HHHSSS-EEEEECC
T ss_pred HHHhcC-cEEeCCC
Confidence 667644 3444443
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.26 E-value=2.5e-12 Score=130.82 Aligned_cols=146 Identities=12% Similarity=0.140 Sum_probs=100.7
Q ss_pred chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcce------------------------
Q 010975 221 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------ 276 (496)
Q Consensus 221 ~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~------------------------ 276 (496)
++++.+.+...+... ..++.+||+||||+|||++|+++|+.+...
T Consensus 7 ~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 455666666655321 123569999999999999999999988532
Q ss_pred eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccC
Q 010975 277 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 352 (496)
Q Consensus 277 ~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 352 (496)
++.++..+- ........++.+++.+.. ..+.|++|||+|.+... ..+.|+..++. .+
T Consensus 76 ~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lEe---p~ 136 (334)
T 1a5t_A 76 YYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEE---PP 136 (334)
T ss_dssp EEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTS---CC
T ss_pred EEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhcC---CC
Confidence 222222100 011123456677776653 23579999999987322 23567777763 33
Q ss_pred cEEEEEeccCCcccccHHHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975 353 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 397 (496)
Q Consensus 353 ~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~~~l 397 (496)
..+++|.+|+.++.+.+++++|+.. +.++.|+.++...+++...
T Consensus 137 ~~~~~Il~t~~~~~l~~ti~SRc~~-~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 137 AETWFFLATREPERLLATLRSRCRL-HYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEE-EECCCCCHHHHHHHHHHHC
T ss_pred CCeEEEEEeCChHhCcHHHhhccee-eeCCCCCHHHHHHHHHHhc
Confidence 4466777788899999999999965 9999999999999998876
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=1.2e-11 Score=124.51 Aligned_cols=142 Identities=11% Similarity=0.098 Sum_probs=101.2
Q ss_pred cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh------cceeeeeecccccccccCCh
Q 010975 220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSVVSKWRGDS 293 (496)
Q Consensus 220 G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l------~~~~i~v~~s~l~~~~~G~~ 293 (496)
|++++.+.|...+.... ..++||+||||+|||++|+++|+.+ ...++.+++++- ...
T Consensus 1 g~~~~~~~L~~~i~~~~------------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE------------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTCS------------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHCCC------------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 67778888888774421 2589999999999999999999864 235566654320 112
Q ss_pred HHHHHHHHHHhhhcC----CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH
Q 010975 294 EKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 369 (496)
Q Consensus 294 e~~l~~lf~~a~~~~----p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~ 369 (496)
-..++.+++.+.... ..|++|||+|.+.. ...+.|+..++. .+..+++|.+|+.+..+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~-------------~a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-------------QAANAFLKALEE---PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-------------HHHHHTHHHHHS---CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH-------------HHHHHHHHHHhC---CCCCeEEEEEECChHhChH
Confidence 345677777765432 35999999998732 234678888873 3334556667788889999
Q ss_pred HHHHHhhhhhcccCCCHHHHHHHHHhhC
Q 010975 370 AMLRRLEKRILVPLPDTEARRAMFESLL 397 (496)
Q Consensus 370 aL~rRf~~~I~~~~P~~eeR~~Il~~~l 397 (496)
++++| .+.++.|+.++...+++..+
T Consensus 128 tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 69999999999999988876
No 82
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.21 E-value=2.5e-12 Score=132.76 Aligned_cols=228 Identities=19% Similarity=0.210 Sum_probs=140.2
Q ss_pred CCCCcHHHHHHHHHHhhhhhhCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHH
Q 010975 188 PNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 267 (496)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAr 267 (496)
|+++........+.+........+...-.+++|......++.+.+.... .....++++|++||||+++|+
T Consensus 101 KP~~~~~L~~~i~~~l~~~~~~~~~~~~~~~ig~s~~~~~~~~~~~~~a----------~~~~~vli~GesGtGKe~lAr 170 (368)
T 3dzd_A 101 KPFSVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIA----------KSKAPVLITGESGTGKEIVAR 170 (368)
T ss_dssp SSCCHHHHHHHHHHHHHHHSCCCCCCCCCCCCCCSHHHHHHHHHHHHHH----------TSCSCEEEECCTTSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccccccccccchHHHHHHhhhhhhh----------ccchhheEEeCCCchHHHHHH
Confidence 4556566665555554443332222233568888887777776653322 122469999999999999999
Q ss_pred HHHhhhcce--eeeeeccccccc---------ccCChHH---HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHH
Q 010975 268 AVATECKTT--FFNISASSVVSK---------WRGDSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEA 333 (496)
Q Consensus 268 alA~~l~~~--~i~v~~s~l~~~---------~~G~~e~---~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~ 333 (496)
+++...+.. |+.++|+.+... ..|...+ .-...|+.+.. ++||||||+.+...
T Consensus 171 ~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~---------- 237 (368)
T 3dzd_A 171 LIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQR---------- 237 (368)
T ss_dssp HHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCHH----------
T ss_pred HHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCC---CeEEecChhhCCHH----------
Confidence 999987543 999999865322 1111111 01124555554 79999999988433
Q ss_pred hhhhhhhhhhhccC--------ccccCcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHH----HHHHH
Q 010975 334 SRRLKTELLIQMDG--------LTQSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEAR----RAMFE 394 (496)
Q Consensus 334 ~~~i~~~Ll~~ld~--------~~~~~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR----~~Il~ 394 (496)
++..|+..++. .....-.+.+|++||..- .+.+.|..|+.. +.+..|...+| ..+++
T Consensus 238 ---~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~-~~i~lPpLreR~~Di~~l~~ 313 (368)
T 3dzd_A 238 ---VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSV-FQIYLPPLRERGKDVILLAE 313 (368)
T ss_dssp ---HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTS-EEEECCCGGGSTTHHHHHHH
T ss_pred ---HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCC-eEEeCCChhhchhhHHHHHH
Confidence 23344444432 111222466788887651 245578888865 66666666555 44555
Q ss_pred hhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCC
Q 010975 395 SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 449 (496)
Q Consensus 395 ~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~ 449 (496)
+++.+.... ..+...++++..++.+.++.|.+++|++.+.++......
T Consensus 314 ~~l~~~~~~-------~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 314 YFLKKFAKE-------YKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHHHH-------TTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH-------cCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 555432211 112234577888999999999999999999888665443
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.21 E-value=1.4e-11 Score=127.12 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=106.0
Q ss_pred ccchhhcchHHHHHHhhhh-cccccCccccccccCccceeee--eCCCCChhHHHHHHHHhhh---------cceeeeee
Q 010975 214 KWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILL--FGPPGTGKTMLAKAVATEC---------KTTFFNIS 281 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l-~~~~~~~~~~~~~~~~~~~vLL--~GPpGtGKT~LAralA~~l---------~~~~i~v~ 281 (496)
..++++|.++..+.|.+.+ ....... ...+..++| +||||+|||++++.+++.+ +..++.++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3478999999999998877 4322110 012357899 9999999999999999877 45677887
Q ss_pred ccccccc----------------ccCC-hHHHHHHHHHHhh-hcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhh
Q 010975 282 ASSVVSK----------------WRGD-SEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 343 (496)
Q Consensus 282 ~s~l~~~----------------~~G~-~e~~l~~lf~~a~-~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~ 343 (496)
+...... ..+. .......+..... ...|.||+|||+|.+....... ......++.
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-------~~~l~~l~~ 166 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-------AEDLYTLLR 166 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-------HHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-------hHHHHHHHH
Confidence 6432110 0011 1222223332222 2346799999999986421100 122233344
Q ss_pred hccCccccC--cEEEEEeccCCcc---ccc---HHHHHHhhhhhcccCCCHHHHHHHHHhhCC
Q 010975 344 QMDGLTQSD--ELVFVLAATNLPW---ELD---AAMLRRLEKRILVPLPDTEARRAMFESLLP 398 (496)
Q Consensus 344 ~ld~~~~~~--~~viVIatTn~p~---~Ld---~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~ 398 (496)
.++...... .++.+|++|+.++ .++ +.+.+|+...+.+++++.++..++++..+.
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 443222112 5577787887664 344 666677766689999999999999977653
No 84
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.21 E-value=2e-12 Score=141.76 Aligned_cols=53 Identities=34% Similarity=0.491 Sum_probs=45.5
Q ss_pred hCCCCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 208 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 208 ~~~~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
...++..|++++|++.+++.+...+.. ..+++|+||||||||++|+++|..+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 456778899999999999988877642 25899999999999999999999874
No 85
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.19 E-value=1.7e-12 Score=134.90 Aligned_cols=215 Identities=21% Similarity=0.255 Sum_probs=137.1
Q ss_pred cchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc---
Q 010975 215 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 288 (496)
Q Consensus 215 l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~--- 288 (496)
++.++|.....+.+.+.+.... .....++|+|++||||+++|++++... +.+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 4568888777777776654321 223578999999999999999999876 478999999875321
Q ss_pred ------ccCChHH---HHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc--------Ccccc
Q 010975 289 ------WRGDSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD--------GLTQS 351 (496)
Q Consensus 289 ------~~G~~e~---~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld--------~~~~~ 351 (496)
..|...+ .....|+.|.. ++||||||+.+... ++..|+..++ +....
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 1111111 01234555554 79999999988433 2233444333 22222
Q ss_pred CcEEEEEeccCCcc-------cccHHHHHHhhhhhcccCCCHHHHHH----HHHhhCCCCCCCCCCCcceeeecccCCcC
Q 010975 352 DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSG 420 (496)
Q Consensus 352 ~~~viVIatTn~p~-------~Ld~aL~rRf~~~I~~~~P~~eeR~~----Il~~~l~~~~~~~~~~l~~la~~t~g~s~ 420 (496)
...+.||++||..- .+.+.|..|+.. +.+..|...+|.+ ++++++........ ....++++
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~-------~~~~~~~~ 341 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKKFSRKYA-------KEVEGFTK 341 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTT-------CCCCEECH
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHHhhcC-CeecCCcchhccccHHHHHHHHHHHHHHHcC-------CCCCCCCH
Confidence 33577888998752 256677778855 6677787766643 55555433211111 11235777
Q ss_pred CchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHHHHh
Q 010975 421 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 469 (496)
Q Consensus 421 ~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~~Al 469 (496)
..+..+.++.|.+++|++.+.++........+ .|+.+|+-..+
T Consensus 342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~~------~i~~~~l~~~~ 384 (387)
T 1ny5_A 342 SAQELLLSYPWYGNVRELKNVIERAVLFSEGK------FIDRGELSCLV 384 (387)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHHCCSS------EECHHHHHHHC
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhCCCC------cCcHHHCcHhh
Confidence 88889999999999999999887665544332 37888886544
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.08 E-value=3.9e-11 Score=143.07 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=104.3
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccC----------cccccc-----------------ccCccce--eeeeCCCCCh
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKY----------PKYFTG-----------------LLSPWKG--ILLFGPPGTG 261 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~----------~~~~~~-----------------~~~~~~~--vLL~GPpGtG 261 (496)
+.++|+|+.|++++|+.+.+.+.+++.+ ++.+.. ...+|++ +|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4578999999999999999999888844 444443 1124445 9999999999
Q ss_pred hHHHHHHHHhhhc---ceeeeeeccccc------------ccccCC----hHHHHHHHHHHhhhcCCcceehhhHHHHHh
Q 010975 262 KTMLAKAVATECK---TTFFNISASSVV------------SKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAIIS 322 (496)
Q Consensus 262 KT~LAralA~~l~---~~~i~v~~s~l~------------~~~~G~----~e~~l~~lf~~a~~~~p~ILfIDEID~L~~ 322 (496)
||++|++++.+.. .+.+.|+..+.. +++.++ .++.++.++..|+...|+++|+|++|.|.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 9999999999773 444444444322 456666 899999999999999999999999999988
Q ss_pred hhc---CCc-chhHHhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 323 QRG---EAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 323 ~r~---~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
.+. ... .+.....+++++++..+++...... |+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~-v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT-CEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCC-eEEE-Eeccc
Confidence 742 111 1224556778899999987655554 5455 66766
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.01 E-value=1.5e-10 Score=143.50 Aligned_cols=140 Identities=20% Similarity=0.302 Sum_probs=91.1
Q ss_pred ccceeeeeCCCCChhHHHH-HHHHhhhcceeeeeecccccccccCChHHHHHHHHHHh----h-----------hcCCcc
Q 010975 248 PWKGILLFGPPGTGKTMLA-KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----R-----------HHAPST 311 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LA-ralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a----~-----------~~~p~I 311 (496)
..+++||+||||||||++| +.++...+..++.++.+...+ ...+...++.. + ..++.|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 3478999999999999999 555555577888888776542 23333433322 1 122369
Q ss_pred eehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccc-------cCcEEEEEeccCCcc-----cccHHHHHHhhhhh
Q 010975 312 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPW-----ELDAAMLRRLEKRI 379 (496)
Q Consensus 312 LfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I 379 (496)
|||||+|....++.+.+...+ ++.++++. ++... ...++.+|||+|.|. .++++++||| .++
T Consensus 1340 lFiDEinmp~~d~yg~q~~le----lLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQNVVL----FLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AIL 1413 (2695)
T ss_dssp EEEETTTCSCCCSSSCCHHHH----HHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEE
T ss_pred EEecccccccccccCchhHHH----HHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEE
Confidence 999999864333222222222 22222221 11111 113478999999994 7999999999 559
Q ss_pred cccCCCHHHHHHHHHhhCCC
Q 010975 380 LVPLPDTEARRAMFESLLPS 399 (496)
Q Consensus 380 ~~~~P~~eeR~~Il~~~l~~ 399 (496)
.++.|+.+++..|+..++..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877643
No 88
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.97 E-value=8.3e-11 Score=96.68 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=65.7
Q ss_pred CHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchh
Q 010975 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 464 (496)
Q Consensus 385 ~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eD 464 (496)
+.++|.+||+.++++.+...+++++.+|+.|+||||+||..+|++|++.++++. ...||++|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~------------------~~~i~~~d 63 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------------------RKVATEKD 63 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc------------------cccCCHHH
Confidence 567899999999999988889999999999999999999999999999999871 12489999
Q ss_pred HHHHhhcCCCCccc--hhhhhhhhc
Q 010975 465 VEIALKNTRPSAHL--HAHRYEKFN 487 (496)
Q Consensus 465 f~~Al~~~~Ps~~~--~~~~~~~~~ 487 (496)
|..|++++.++... ....|.+|+
T Consensus 64 f~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 64 FLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHTC---------------
T ss_pred HHHHHHHHhcCcccccchhHHhccC
Confidence 99999999999765 378888886
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.95 E-value=1.4e-10 Score=106.64 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=61.0
Q ss_pred CCCCCccchhhc----chHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh----cceeeee
Q 010975 209 GSPDVKWESIKG----LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNI 280 (496)
Q Consensus 209 ~~~~~~l~dliG----~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v 280 (496)
++.+.+|+++++ +..+.+.+.+++.... ...+.+++|+|||||||||+++++++.+ |..++.+
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 445667888875 3445555555443221 1234689999999999999999999987 5567777
Q ss_pred ecccccccccCChHH-HHHHHHHHhhhcCCcceehhhHHH
Q 010975 281 SASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDA 319 (496)
Q Consensus 281 ~~s~l~~~~~G~~e~-~l~~lf~~a~~~~p~ILfIDEID~ 319 (496)
+..++...+...... ....++... ..|.+|+|||++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~ 111 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGS 111 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSS
T ss_pred EHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCC
Confidence 776654332111000 000122222 2568999999964
No 90
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.91 E-value=2.5e-10 Score=92.48 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=65.4
Q ss_pred CHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchh
Q 010975 385 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 464 (496)
Q Consensus 385 ~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eD 464 (496)
+.++|.+||+.++++.....+++++.+++.|+||||+||..+|++|++.++++. ..+||++|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~~~d 63 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------------RYIVLAKD 63 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHH
Confidence 678999999999999888788999999999999999999999999999988741 13599999
Q ss_pred HHHHhhcCCCCccchhhhh
Q 010975 465 VEIALKNTRPSAHLHAHRY 483 (496)
Q Consensus 465 f~~Al~~~~Ps~~~~~~~~ 483 (496)
|..|+++++|+.+.++..|
T Consensus 64 f~~Al~~~~ps~~~~l~~y 82 (83)
T 3aji_B 64 FEKAYKTVIKKDEQEHEFY 82 (83)
T ss_dssp HHHHHHHHCC---------
T ss_pred HHHHHHHHccCchHHHHhc
Confidence 9999999999988555555
No 91
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.90 E-value=1.7e-10 Score=94.49 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=70.0
Q ss_pred cccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCC
Q 010975 380 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGP 459 (496)
Q Consensus 380 ~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~ 459 (496)
.-.+|+.++|.+||+.++++.....+++++.+|+.|+||||+||..+|++|++.++++. ..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------------~~~ 68 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVH 68 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------------CSE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------------CCC
Confidence 34689999999999999999888888999999999999999999999999999998862 135
Q ss_pred CCchhHHHHhhcCCCC
Q 010975 460 IRPEDVEIALKNTRPS 475 (496)
Q Consensus 460 It~eDf~~Al~~~~Ps 475 (496)
||++||..|+++++|.
T Consensus 69 I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 69 VTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ECHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHccC
Confidence 9999999999998875
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.89 E-value=6.7e-10 Score=99.98 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=66.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcC
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 326 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~ 326 (496)
..++|+||+|+|||+|+++++..+ |.+.+.++..++... +...+|.+|+|||++.+...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~--- 98 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE--- 98 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH---
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH---
Confidence 579999999999999999999987 666788887766543 11234689999999764211
Q ss_pred CcchhHHhhhhhhhhhhhccCccccCcEEEEEeccC-Cccccc--HHHHHHhhhhhccc
Q 010975 327 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWELD--AAMLRRLEKRILVP 382 (496)
Q Consensus 327 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn-~p~~Ld--~aL~rRf~~~I~~~ 382 (496)
. ...++..++.....+..++|+ ||+ .|..+. +++.+|+..-..+.
T Consensus 99 ---~-------~~~l~~li~~~~~~g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 99 ---E-------QALLFSIFNRFRNSGKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp ---H-------HHHHHHHHHHHHHHTCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred ---H-------HHHHHHHHHHHHHcCCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEE
Confidence 0 223334443322333333444 455 454332 89999997655444
No 93
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.82 E-value=3.9e-10 Score=90.31 Aligned_cols=75 Identities=25% Similarity=0.322 Sum_probs=67.2
Q ss_pred cCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCC
Q 010975 382 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR 461 (496)
Q Consensus 382 ~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It 461 (496)
|+|+.++|.+||+.++++.....+++++.+++.|+||||+||..+|++|++.++++. ...||
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~ 62 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVHVT 62 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------CSEEC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------CCCCC
Confidence 689999999999999999888788999999999999999999999999999998851 13589
Q ss_pred chhHHHHhhcCCC
Q 010975 462 PEDVEIALKNTRP 474 (496)
Q Consensus 462 ~eDf~~Al~~~~P 474 (496)
++||..|++++..
T Consensus 63 ~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 63 QEDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.77 E-value=9e-10 Score=102.92 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=59.5
Q ss_pred CCccchhhcchH----HHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccc
Q 010975 212 DVKWESIKGLEN----AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 284 (496)
Q Consensus 212 ~~~l~dliG~e~----vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~ 284 (496)
+.+|+++++.+. +.+.+.+++.... .. ..+.+++|+||||||||++|+++++.+ +.+++.+++.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYE---PG-----KKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCC---SS-----CCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhh---hc-----cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 456888887553 3334444432211 00 012689999999999999999999988 66788888776
Q ss_pred ccccccCCh-HHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975 285 VVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAI 320 (496)
Q Consensus 285 l~~~~~G~~-e~~l~~lf~~a~~~~p~ILfIDEID~L 320 (496)
+........ ...+..++..... +.+|+|||++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 93 LFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 554322110 0011222333322 369999999653
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.68 E-value=4e-09 Score=105.92 Aligned_cols=179 Identities=17% Similarity=0.154 Sum_probs=103.3
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc----
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 286 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~---- 286 (496)
+....+.++|.++..+.|.+ +.. ..++|+||+|+|||++++.++++.+..++.+++....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 44456789999999999888 632 3799999999999999999999887667777765320
Q ss_pred -c--c-------------------------c-----cC---C------hHHHHHHHHHHhhhc--CCcceehhhHHHHHh
Q 010975 287 -S--K-------------------------W-----RG---D------SEKLIKVLFELARHH--APSTIFLDEIDAIIS 322 (496)
Q Consensus 287 -~--~-------------------------~-----~G---~------~e~~l~~lf~~a~~~--~p~ILfIDEID~L~~ 322 (496)
+ . . .+ . ....+..+++..... .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 0 0 0 00 0 011233333333322 378999999998743
Q ss_pred hhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccH---------HHHHHhhhhhcccCCCHHHHHHHH
Q 010975 323 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA---------AMLRRLEKRILVPLPDTEARRAMF 393 (496)
Q Consensus 323 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~---------aL~rRf~~~I~~~~P~~eeR~~Il 393 (496)
... ..+...+-..++. ..++.+|.|++....+.. .+..|+...+.+++.+.++..+++
T Consensus 152 ~~~---------~~~~~~l~~~~~~----~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 152 LRG---------VNLLPALAYAYDN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp CTT---------CCCHHHHHHHHHH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred cCc---------hhHHHHHHHHHHc----CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 100 1111112112221 112445555544321211 133354456889999999999999
Q ss_pred HhhCCCCCCCCCCCcceeeecccCCc
Q 010975 394 ESLLPSQTGEESLPYDLLVERTEGYS 419 (496)
Q Consensus 394 ~~~l~~~~~~~~~~l~~la~~t~g~s 419 (496)
+..+.......+ +...+...+.|+.
T Consensus 219 ~~~~~~~~~~~~-~~~~i~~~t~G~P 243 (357)
T 2fna_A 219 RRGFQEADIDFK-DYEVVYEKIGGIP 243 (357)
T ss_dssp HHHHHHHTCCCC-CHHHHHHHHCSCH
T ss_pred HHHHHHcCCCCC-cHHHHHHHhCCCH
Confidence 876542222211 1255667777754
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.62 E-value=1.5e-08 Score=101.64 Aligned_cols=183 Identities=17% Similarity=0.159 Sum_probs=101.6
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc----
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 286 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~---- 286 (496)
|....+.++|.++..+.|.+.+.. .+.++|+||+|+|||++++.+++..+ ++.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 444557899999999999887742 14799999999999999999999876 5555543221
Q ss_pred --------c---ccc-------------------------CChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcch
Q 010975 287 --------S---KWR-------------------------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 330 (496)
Q Consensus 287 --------~---~~~-------------------------G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~ 330 (496)
. ... ......+..+...+....|.+|+|||++.+......
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~---- 146 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR---- 146 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT----
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc----
Confidence 0 000 011122222222222234789999999987431000
Q ss_pred hHHhhhhhhhhhhhccCccccCcEEEEEeccCCccccc---------HHHHHHhhhhhcccCCCHHHHHHHHHhhCCCCC
Q 010975 331 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---------AAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 401 (496)
Q Consensus 331 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld---------~aL~rRf~~~I~~~~P~~eeR~~Il~~~l~~~~ 401 (496)
....+...|-..++.. . ++.+|.|+.....+. ..+..|+...+.+++.+.++..++++..+....
T Consensus 147 --~~~~~~~~L~~~~~~~---~-~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 147 --GGKELLALFAYAYDSL---P-NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp --TTHHHHHHHHHHHHHC---T-TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred --chhhHHHHHHHHHHhc---C-CeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 0011122222222211 1 234444443321111 122335445688899999999999987654333
Q ss_pred CC-CCCCcceeeecccCCc
Q 010975 402 GE-ESLPYDLLVERTEGYS 419 (496)
Q Consensus 402 ~~-~~~~l~~la~~t~g~s 419 (496)
.. .......+...+.|+.
T Consensus 221 ~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHHhCCCH
Confidence 22 1122344566677754
No 97
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.58 E-value=1.4e-08 Score=95.92 Aligned_cols=126 Identities=14% Similarity=0.138 Sum_probs=74.9
Q ss_pred eeeeeCCCCChhHHHHHHHHhh--------hc-ceeeeeeccccccccc----------CC-----hHHHHHHHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATE--------CK-TTFFNISASSVVSKWR----------GD-----SEKLIKVLFELARH 306 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~--------l~-~~~i~v~~s~l~~~~~----------G~-----~e~~l~~lf~~a~~ 306 (496)
-.|++|+||+|||++|..++.. .| ++++..+..++.-... .. ....+..++..+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~- 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE- 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc-
Confidence 5789999999999999886433 34 6666666555532221 11 1122222221122
Q ss_pred cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhhhhhcccCCCH
Q 010975 307 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 386 (496)
Q Consensus 307 ~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~~~I~~~~P~~ 386 (496)
...+||+|||++.+.+.+...... ..++..+....... +-||.+|+.+..++.++++|++..+++..|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~--------~rll~~l~~~r~~~--~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI--------PENVQWLNTHRHQG--IDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC--------CHHHHGGGGTTTTT--CEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccchh--------HHHHHHHHhcCcCC--eEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 345799999999986543221110 12333333222222 33455677799999999999998888887644
Q ss_pred H
Q 010975 387 E 387 (496)
Q Consensus 387 e 387 (496)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 3
No 98
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.52 E-value=1.1e-08 Score=82.75 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=49.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCCCCCCCchhHH
Q 010975 387 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 466 (496)
Q Consensus 387 eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~~~~It~eDf~ 466 (496)
++|.+||+.++++.....+++++.+++.|+||||+||..+|++|++.++++. ...||++||.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~------------------~~~i~~~df~ 62 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------------------RYVILQSDLE 62 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT------------------CSEECHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHHHH
Confidence 4789999999988887778999999999999999999999999999998861 1348999999
Q ss_pred HHhhcCC-CCccc-hhhhh
Q 010975 467 IALKNTR-PSAHL-HAHRY 483 (496)
Q Consensus 467 ~Al~~~~-Ps~~~-~~~~~ 483 (496)
.|++++. |+.+. ++..|
T Consensus 63 ~Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 63 EAYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp HHHHTTCC-----------
T ss_pred HHHHHHHcCcCChHHHHhh
Confidence 9999995 55554 34433
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.51 E-value=2e-08 Score=101.32 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=67.4
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhhcceeeeeec--ccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 324 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~--s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r 324 (496)
.+.+.++|+||||+|||+||.++|.+.+.++..++. .+..+.+....+..+..+.+...... +|+||+++.+....
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAA 198 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC---
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccc
Confidence 344568999999999999999999876655444444 33333333455666666666665544 99999999885432
Q ss_pred cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHH
Q 010975 325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 371 (496)
Q Consensus 325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL 371 (496)
..... .....+...+++..+.+.....+ +.+|+++| +...++++
T Consensus 199 ~~~s~-~G~v~~~lrqlL~~L~~~~k~~g-vtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GGNTT-SGGISRGAFDLLSDIGAMAASRG-CVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHT-CEEEEECC-CSSCSSSH
T ss_pred ccccc-cchHHHHHHHHHHHHHHHHhhCC-CEEEEEeC-CcccchhH
Confidence 21100 00112223344444443322223 44666777 44455444
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.48 E-value=1.4e-08 Score=102.21 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=57.9
Q ss_pred CCccchhhcch----HHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeecc
Q 010975 212 DVKWESIKGLE----NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS 283 (496)
Q Consensus 212 ~~~l~dliG~e----~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s 283 (496)
+.+|+++++.. .+.+.+.+++... +. ....+++|+||||||||+||+++|+++. .+++.+++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~---~~------~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY---PS------AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC---SC------SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc---cc------cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 35788887643 2333444444321 10 1236899999999999999999999775 677777777
Q ss_pred cccccccCCh-HHHHHHHHHHhhhcCCcceehhhHHHH
Q 010975 284 SVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAI 320 (496)
Q Consensus 284 ~l~~~~~G~~-e~~l~~lf~~a~~~~p~ILfIDEID~L 320 (496)
++........ .......+.... .+.+|+|||++..
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 6654332211 111111222222 3469999999543
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.45 E-value=1.2e-08 Score=107.56 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=83.5
Q ss_pred hhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHH-Hhhhcceeeeeec-c---cccccccC
Q 010975 217 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV-ATECKTTFFNISA-S---SVVSKWRG 291 (496)
Q Consensus 217 dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAral-A~~l~~~~i~v~~-s---~l~~~~~G 291 (496)
.|+|++.+|+.|.-.+...... ....-|+||.|+||| ||++|+++ ++.+....+.... + .+.....+
T Consensus 214 pI~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 214 PLPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp CSTTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred ccCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 3999999998888766443111 112238999999999 99999999 7766443332111 0 11111100
Q ss_pred C--hHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhcc-------CccccCcEEEEEeccC
Q 010975 292 D--SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD-------GLTQSDELVFVLAATN 362 (496)
Q Consensus 292 ~--~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld-------~~~~~~~~viVIatTn 362 (496)
. ..- -...+..|.. +|+|||||+.+..+. +..|++.|+ |. .-+.++.||||+|
T Consensus 286 ~tG~~~-~~G~l~LAdg---Gvl~lDEIn~~~~~~-------------qsaLlEaMEe~~VtI~G~-~lparf~VIAA~N 347 (506)
T 3f8t_A 286 DRGWAL-RAGAAVLADG---GILAVDHLEGAPEPH-------------RWALMEAMDKGTVTVDGI-ALNARCAVLAAIN 347 (506)
T ss_dssp SSSEEE-EECHHHHTTT---SEEEEECCTTCCHHH-------------HHHHHHHHHHSEEEETTE-EEECCCEEEEEEC
T ss_pred CCCccc-CCCeeEEcCC---CeeehHhhhhCCHHH-------------HHHHHHHHhCCcEEECCE-EcCCCeEEEEEeC
Confidence 0 000 0112333333 799999998874332 233333332 33 3345678999999
Q ss_pred Ccc-----------cccHHHHHHhhhh-hcccCCCHHH
Q 010975 363 LPW-----------ELDAAMLRRLEKR-ILVPLPDTEA 388 (496)
Q Consensus 363 ~p~-----------~Ld~aL~rRf~~~-I~~~~P~~ee 388 (496)
..+ .|++++++||+.. +.++.|+.++
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred cccccCCCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 864 7899999999753 3456665443
No 102
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.39 E-value=1.4e-07 Score=89.23 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=26.8
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
.+++||+||||||||++|.++|+.++..++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 3689999999999999999999998665543
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.37 E-value=2.7e-07 Score=114.75 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=87.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~ 329 (496)
.+.++.||+|||||++++++|+.+|.+++.++|++-.+ ...+..+|..+.... +++++||++.+....-
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~evL---- 714 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKVL---- 714 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHH----
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHHH----
Confidence 47899999999999999999999999999999987543 344566676666544 7999999987633210
Q ss_pred hhHHhhhhhhhhhhhc---------cCc-cccCcEEEEEeccCCc----ccccHHHHHHhhhhhcccCCCHHHHHHHH
Q 010975 330 EHEASRRLKTELLIQM---------DGL-TQSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMF 393 (496)
Q Consensus 330 ~~~~~~~i~~~Ll~~l---------d~~-~~~~~~viVIatTn~p----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il 393 (496)
... .+.+..+...+ +|. ..-.....|++|.|.. ..+++++++|| +.+.+..|+.+...+|+
T Consensus 715 -s~l-~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 715 -SAV-SANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp -HHH-HHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHH
T ss_pred -HHH-HHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHH
Confidence 000 01111111111 111 1112234567788743 46999999999 45999999998888875
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.22 E-value=5.6e-07 Score=112.78 Aligned_cols=142 Identities=21% Similarity=0.281 Sum_probs=84.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHh-hhcceeeeeecccccccccCChHHHHHHHHHH----hh----h--------cCCcc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVAT-ECKTTFFNISASSVVSKWRGDSEKLIKVLFEL----AR----H--------HAPST 311 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~-~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~----a~----~--------~~p~I 311 (496)
.+++||+||||||||++++.... ..+.+++.++++.-.+ ...+...++. .. + .+..|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 36899999999999987765444 4477788888776432 2333333332 01 0 11249
Q ss_pred eehhhHHHHHhhhcCCcchhHHhhhhhhh--hhhhccCccccCcEEEEEeccCCcc-----cccHHHHHHhhhhhcccCC
Q 010975 312 IFLDEIDAIISQRGEARSEHEASRRLKTE--LLIQMDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLP 384 (496)
Q Consensus 312 LfIDEID~L~~~r~~~~~~~~~~~~i~~~--Ll~~ld~~~~~~~~viVIatTn~p~-----~Ld~aL~rRf~~~I~~~~P 384 (496)
+||||++.-..+.-+.+...+..+++.+. +...-+........+.+|||+|.|. .+++++.|||.. +.++.|
T Consensus 1378 lFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i~i~~p 1456 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI-LLVDFP 1456 (3245)
T ss_dssp EEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE-EECCCC
T ss_pred EEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE-EEeCCC
Confidence 99999975322221211111222221110 0000000001123477899999883 599999999966 999999
Q ss_pred CHHHHHHHHHhhC
Q 010975 385 DTEARRAMFESLL 397 (496)
Q Consensus 385 ~~eeR~~Il~~~l 397 (496)
+.++...|+..++
T Consensus 1457 s~esL~~If~til 1469 (3245)
T 3vkg_A 1457 STSSLTQIYGTFN 1469 (3245)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999976543
No 105
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.03 E-value=2.5e-06 Score=83.88 Aligned_cols=26 Identities=46% Similarity=0.663 Sum_probs=23.6
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.++++|+||||||||++|+++|+.++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 46899999999999999999999754
No 106
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.01 E-value=2.3e-06 Score=103.67 Aligned_cols=117 Identities=21% Similarity=0.314 Sum_probs=74.7
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----cc------------cCChHHHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KW------------RGDSEKLIKVLFELARH 306 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----~~------------~G~~e~~l~~lf~~a~~ 306 (496)
+.++++++|+||||||||+||.+++.+. |..+..++..+..+ .. ....+..++.+...++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 4567889999999999999999998876 44555555543321 11 22455667777777888
Q ss_pred cCCcceehhhHHHHHhhh---cCCcchhH-HhhhhhhhhhhhccCccccCcEEEEEeccCCc
Q 010975 307 HAPSTIFLDEIDAIISQR---GEARSEHE-ASRRLKTELLIQMDGLTQSDELVFVLAATNLP 364 (496)
Q Consensus 307 ~~p~ILfIDEID~L~~~r---~~~~~~~~-~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p 364 (496)
.+|++|+|||++.+.+.. ++....+. ...++..+++..|.+...... +.|| +||..
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEE-EEECE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEE-EEccc
Confidence 899999999998776532 11111111 124556667777766554444 3344 55544
No 107
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.95 E-value=2.1e-05 Score=72.55 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.9
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcce
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTT 276 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~ 276 (496)
.+.|.||+|+|||||++.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999987643
No 108
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.77 E-value=1e-05 Score=81.75 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=81.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcc----e--eeeeecccccccccCChHHHHHHHHHHhhh----cCCcceehhhHHH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKT----T--FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDA 319 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~----~--~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~----~~p~ILfIDEID~ 319 (496)
+.+||+||+|.||++.++.+++.+.. + .+.++. ...++.+.+.+.. ....|++|||+|.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 57999999999999999999987631 2 222221 1223444444432 2346999999976
Q ss_pred -HHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCC-----cccccHHHHHHhhhhhcccCCCHHHHHHHH
Q 010975 320 -IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-----PWELDAAMLRRLEKRILVPLPDTEARRAMF 393 (496)
Q Consensus 320 -L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~-----p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il 393 (496)
+. ....+.|+..++. .....++|+++++. ...+.+++.+|+.. +.+..++.++....+
T Consensus 88 kl~-------------~~~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~-~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 88 GPN-------------AAINEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQ-VTCQTPEQAQLPRWV 151 (343)
T ss_dssp CCC-------------TTHHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEE-EEECCCCTTHHHHHH
T ss_pred CCC-------------hHHHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceE-EEeeCCCHHHHHHHH
Confidence 42 2234557777763 23445555555442 23577888889854 889899999999888
Q ss_pred HhhCCCCCC
Q 010975 394 ESLLPSQTG 402 (496)
Q Consensus 394 ~~~l~~~~~ 402 (496)
+..+...+.
T Consensus 152 ~~~~~~~g~ 160 (343)
T 1jr3_D 152 AARAKQLNL 160 (343)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 888765543
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.76 E-value=2.6e-05 Score=98.03 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=85.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 329 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~ 329 (496)
.+..+.||+|||||.+++.+|+.+|++++.++|++-.+ ...+.++|.-+.... +..++||++.+-...-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~G-aW~cfDEfNrl~~~vLSv-- 675 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQCG-AWGCFDEFNRLEERILSA-- 675 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHHHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhcC-cEEEehhhhcCCHHHHHH--
Confidence 35689999999999999999999999999999987543 234556666555443 689999998763221000
Q ss_pred hhHHhhhhhhhhhhh-----cc-Ccc-ccCcEEEEEeccCCc----ccccHHHHHHhhhhhcccCCCHHHHHHHH
Q 010975 330 EHEASRRLKTELLIQ-----MD-GLT-QSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMF 393 (496)
Q Consensus 330 ~~~~~~~i~~~Ll~~-----ld-~~~-~~~~~viVIatTn~p----~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il 393 (496)
-......+..++... ++ |.. .-.....|++|.|.- ..|++.|++||-. +.+..||.+...+|+
T Consensus 676 v~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~-v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 676 VSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRS-MAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEE-EECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEE-EEEeCCCHHHHHHHH
Confidence 000001111111111 11 210 111224567788743 4699999999944 999999988887765
No 110
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.58 E-value=7.1e-06 Score=84.70 Aligned_cols=114 Identities=15% Similarity=0.088 Sum_probs=63.3
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccccccccCChHHHHHHHHHHhhhcCCcceehhhHHHHHh-hh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS-QR 324 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~~~~~G~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~-~r 324 (496)
+.++..++|+||||+||||++++++..++..++.+....- .....+. ...+..++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg------~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELG------VAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHG------GGTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHH------HhcchhHHHHHHHHHHHHHHh
Confidence 4556789999999999999999999988776655432211 0011111 112335789999987754 21
Q ss_pred cCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHH--Hhhhhhcc
Q 010975 325 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILV 381 (496)
Q Consensus 325 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~r--Rf~~~I~~ 381 (496)
+........ ....+...++|. +.|++++|+++.+ +++++ |++..+..
T Consensus 234 ~l~~~~~~~---~~~~l~~~ldG~------v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 234 DLPSGQGIN---NLDNLRDYLDGS------VKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp TCCCCSHHH---HHHTTHHHHHCS------SCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred hccccCcch---HHHHHHHHhcCC------CeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 111100000 112334444432 3356678888777 34444 45443333
No 111
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.56 E-value=8.9e-05 Score=80.15 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=39.1
Q ss_pred ccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh
Q 010975 214 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 214 ~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~ 272 (496)
....++|.+...++|.+.+.... ...+-++|+||+|+|||+||+.+++.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 45679999999999999875321 12356899999999999999999764
No 112
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.52 E-value=8.9e-06 Score=85.86 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=81.7
Q ss_pred CcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEec---------cC---CcccccHHHHHHhh
Q 010975 309 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA---------TN---LPWELDAAMLRRLE 376 (496)
Q Consensus 309 p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIat---------Tn---~p~~Ld~aL~rRf~ 376 (496)
|.|+||||+|.|. ....+.|+..++.. ...++|++| ++ .+..+++.+++||.
T Consensus 296 ~~VliIDEa~~l~-------------~~a~~aLlk~lEe~---~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-------------IECFTYLHRALESS---IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCB-------------HHHHHHHHHHTTST---TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcC-------------HHHHHHHHHHhhcc---CCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence 4699999999873 33557788888743 223555555 33 26679999999998
Q ss_pred hhhcccCCCHHHHHHHHHhhCCCCCCCCCCCcceeeecccCCcCCchhhcchhhhccHHHHHHHHhhccccCCCCCCCCC
Q 010975 377 KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQ 456 (496)
Q Consensus 377 ~~I~~~~P~~eeR~~Il~~~l~~~~~~~~~~l~~la~~t~g~s~~dI~~l~~~A~~~a~rR~~~~le~~~~i~~~~~~~~ 456 (496)
. +.+++|+.++..++++..+...... ++...+..+.+.++.+..|+.+..++.....+... .
T Consensus 360 ~-~~~~~~~~~e~~~iL~~~~~~~~~~--------------~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~---~ 421 (456)
T 2c9o_A 360 I-IRTMLYTPQEMKQIIKIRAQTEGIN--------------ISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN---G 421 (456)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHHHTCC--------------BCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHT---T
T ss_pred e-eeCCCCCHHHHHHHHHHHHHHhCCC--------------CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhc---C
Confidence 7 6999999999999999876432211 22223333333332344555544444332111100 1
Q ss_pred CCCCCchhHHHHhhcCC
Q 010975 457 IGPIRPEDVEIALKNTR 473 (496)
Q Consensus 457 ~~~It~eDf~~Al~~~~ 473 (496)
...||.+|+.+|+..+-
T Consensus 422 ~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 422 KDSIEKEHVEEISELFY 438 (456)
T ss_dssp CSSBCHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHhc
Confidence 13489999999998764
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.48 E-value=5.2e-05 Score=68.57 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=30.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 284 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~ 284 (496)
..++|+|+||+||||+++.+++.++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 46899999999999999999999998888766543
No 114
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.41 E-value=6.7e-05 Score=68.38 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=29.1
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.+.++|+||||+||||+++.+|+.++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357999999999999999999999998887643
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.40 E-value=0.00019 Score=66.89 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=30.5
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 284 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~ 284 (496)
+.+..-++|+||||+|||++++.++...+.+++.++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 344566899999999999999999985566777776543
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.39 E-value=0.00036 Score=66.17 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.6
Q ss_pred cCccceeeeeCCCCChhHHHHHHHH
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVA 270 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA 270 (496)
+.+..-+.|.||+|+|||||++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3445669999999999999999998
No 117
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.38 E-value=0.00011 Score=77.43 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=36.8
Q ss_pred hhhhCCCCCccchhh-cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 205 DIIRGSPDVKWESIK-GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 205 ~~~~~~~~~~l~dli-G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..++.+.+|+++- ++..+...+...+... ...++|.|+||||||+++.+++..+
T Consensus 13 ~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~-------------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 13 GLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEK-------------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp --------CCSSCCCHHHHHHHHHHHHHHHSS-------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccccCCCccccCCHHHHHHHHHHHHHHhcC-------------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455667777788875 6666666666555321 1379999999999999999999877
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.36 E-value=7.4e-05 Score=70.77 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.5
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhh--h-------cceeeeeeccc
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATE--C-------KTTFFNISASS 284 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~--l-------~~~~i~v~~s~ 284 (496)
+.+..-++|+||||+|||++++.++.. . +...+.++...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 344566899999999999999999984 3 34566666543
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.36 E-value=0.00013 Score=73.46 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=50.2
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeeccccc-cc-------ccC----------------C
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV-SK-------WRG----------------D 292 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~l~-~~-------~~G----------------~ 292 (496)
+++..-++|+||||+|||+++..++... +.++++++..... .. ..| .
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 4455669999999999999999998764 4567777665421 00 000 1
Q ss_pred hH---HHHHHHHHHhhh-cCCcceehhhHHHHHhh
Q 010975 293 SE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 293 ~e---~~l~~lf~~a~~-~~p~ILfIDEID~L~~~ 323 (496)
.+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 11 122233334444 56789999999998754
No 120
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.33 E-value=9.8e-05 Score=68.56 Aligned_cols=34 Identities=35% Similarity=0.500 Sum_probs=29.5
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
+...++|.||||+||||+++.+++.++.+++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3467999999999999999999999998887543
No 121
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.29 E-value=0.00017 Score=67.53 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=23.2
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+..-+.|.||+|+|||||++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444568999999999999999998743
No 122
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.28 E-value=0.00025 Score=66.35 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=22.8
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+...++|.||||+|||++++.++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344568999999999999999999654
No 123
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.27 E-value=0.00034 Score=81.43 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=40.7
Q ss_pred CCCccchhhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh
Q 010975 211 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 211 ~~~~l~dliG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~ 272 (496)
.+.....++|.++..++|.+.+...- ...+-+.|+|+.|+|||+||+.+++.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 44445679999999999999874321 12256889999999999999999886
No 124
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.26 E-value=7.3e-05 Score=78.61 Aligned_cols=99 Identities=21% Similarity=0.335 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHhhhcCCcceehhhHHHHHhhhcCCcchhHHhh-hhhhhhhhhccCcc-------ccCcEEEEEecc--
Q 010975 292 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLT-------QSDELVFVLAAT-- 361 (496)
Q Consensus 292 ~~e~~l~~lf~~a~~~~p~ILfIDEID~L~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~-------~~~~~viVIatT-- 361 (496)
..+...+..++.+..+ +++++||||+++.+... ...+.+. -++..||..+++.. ...+++++|+|.
T Consensus 236 ~~~~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf 311 (444)
T 1g41_A 236 NPEELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAF 311 (444)
T ss_dssp CHHHHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECC
T ss_pred CHHHHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccc
Confidence 3456666677766432 69999999999765321 1223333 36678999998642 134557888886
Q ss_pred --CCcccccHHHHHHhhhhhcccCCCHHHHHHHHH
Q 010975 362 --NLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 394 (496)
Q Consensus 362 --n~p~~Ld~aL~rRf~~~I~~~~P~~eeR~~Il~ 394 (496)
+.|.++-|+|++||+.++.++.++.++..+|+.
T Consensus 312 ~~~~~~dlipel~~R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 312 QVARPSDLIPELQGRLPIRVELTALSAADFERILT 346 (444)
T ss_dssp SSCCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred ccCChhhcchHHhcccceeeeCCCCCHHHHHHHHH
Confidence 345456689999999999999999999999994
No 125
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.24 E-value=0.00019 Score=73.46 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=49.6
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----------------ccCChHHHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELARH 306 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----------------~~G~~e~~l~~lf~~a~~ 306 (496)
+.+..-++|+||||+|||+|+..++..+ +.++++++....... .....+..+..+-...+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 4455669999999999999999999875 556666765432210 011223333332223334
Q ss_pred cCCcceehhhHHHHHh
Q 010975 307 HAPSTIFLDEIDAIIS 322 (496)
Q Consensus 307 ~~p~ILfIDEID~L~~ 322 (496)
..+.+++||.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 6788999999877654
No 126
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.23 E-value=0.0003 Score=71.75 Aligned_cols=76 Identities=24% Similarity=0.316 Sum_probs=48.7
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccccc----ccC------------ChHHHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----WRG------------DSEKLIKVLFELARH 306 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~----~~G------------~~e~~l~~lf~~a~~ 306 (496)
+.+..-++|+||||+|||+|+..++... +.+++.++....... ..| ..+..+..+...++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 4455669999999999999999998765 456666665432111 011 122222222233345
Q ss_pred cCCcceehhhHHHHH
Q 010975 307 HAPSTIFLDEIDAII 321 (496)
Q Consensus 307 ~~p~ILfIDEID~L~ 321 (496)
..|.+|+||++..+.
T Consensus 138 ~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 138 GALDIIVIDSVAALV 152 (349)
T ss_dssp TCCSEEEEECGGGCC
T ss_pred CCCCEEEEcChHhhc
Confidence 678999999998876
No 127
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.22 E-value=0.00016 Score=64.54 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=27.6
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
-++|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5789999999999999999999998876554
No 128
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.20 E-value=0.00028 Score=71.68 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=48.9
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecccccc-c-------ccC----------------C
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS-K-------WRG----------------D 292 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s~l~~-~-------~~G----------------~ 292 (496)
+.+..-++|+||||+|||+++..+|... +..+++++...... . ..| .
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 4555668999999999999999998862 45677776544211 0 000 0
Q ss_pred hH---HHHHHHHHHhhh--cCCcceehhhHHHHHhh
Q 010975 293 SE---KLIKVLFELARH--HAPSTIFLDEIDAIISQ 323 (496)
Q Consensus 293 ~e---~~l~~lf~~a~~--~~p~ILfIDEID~L~~~ 323 (496)
.+ ..+..+...+.. ..+.+|+||.+..+...
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 11 112222333444 56789999999988754
No 129
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.19 E-value=0.00019 Score=65.22 Aligned_cols=32 Identities=41% Similarity=0.708 Sum_probs=28.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
..++|+|+||+||||+++.+++.++.+++.++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 56999999999999999999999998877654
No 130
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.18 E-value=0.00017 Score=65.25 Aligned_cols=30 Identities=33% Similarity=0.600 Sum_probs=27.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.++|.||||+||||+++.+|+.++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887653
No 131
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.18 E-value=0.00018 Score=65.66 Aligned_cols=32 Identities=34% Similarity=0.439 Sum_probs=28.1
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
+.-++|.|+||+||||+++.+++.++.+++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 45689999999999999999999998877654
No 132
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.16 E-value=9.5e-05 Score=68.39 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=22.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v 280 (496)
.-++++||||+||||++..++..+ +.+++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 347899999999999997666654 4444433
No 133
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.14 E-value=0.00027 Score=72.50 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=49.4
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc----------------cCChHHHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----------------RGDSEKLIKVLFELARH 306 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~----------------~G~~e~~l~~lf~~a~~ 306 (496)
+++..-++|+||||+|||++|..++... +.+++.++...-.... ....+..+..+-...+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 4455678999999999999999998765 5567777654322110 01122322222223334
Q ss_pred cCCcceehhhHHHHHh
Q 010975 307 HAPSTIFLDEIDAIIS 322 (496)
Q Consensus 307 ~~p~ILfIDEID~L~~ 322 (496)
..+.+|+||.+..+.+
T Consensus 151 ~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTP 166 (366)
T ss_dssp TCCSEEEEECTTTCCC
T ss_pred CCCCEEEEeChHHhcc
Confidence 5678999999998864
No 134
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.13 E-value=0.00023 Score=65.26 Aligned_cols=32 Identities=38% Similarity=0.588 Sum_probs=28.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh-hcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE-CKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~-l~~~~i~v~ 281 (496)
..++|+|+||+||||+++.+++. +|.+++.++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 56999999999999999999999 788777654
No 135
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.13 E-value=0.00019 Score=65.26 Aligned_cols=31 Identities=23% Similarity=0.504 Sum_probs=27.6
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.++|.|+||+||||+++.+++.+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999998876543
No 136
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.13 E-value=0.00021 Score=64.15 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=28.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.+++|.|+||+||||+++.+|+.+|.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47999999999999999999999999887653
No 137
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.10 E-value=0.00065 Score=65.61 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=31.6
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
.+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34679999999999999999999999866666666555
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.08 E-value=0.00029 Score=64.33 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=30.8
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
++..++|.||||+||||+++.++...+...+.++..++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 34568999999999999999999987777677765443
No 139
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.06 E-value=0.00029 Score=63.24 Aligned_cols=30 Identities=30% Similarity=0.750 Sum_probs=26.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
..+.|.||||+||||+++.++..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 468999999999999999999999876553
No 140
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.04 E-value=0.0003 Score=64.01 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=27.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.-++|.|+||+||||+++.+++.++.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4689999999999999999999998776543
No 141
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.04 E-value=0.0003 Score=70.94 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=31.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
+.++|.||+|+|||++++.+|+.++..++.++.-.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 468999999999999999999999988888875443
No 142
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.03 E-value=0.00028 Score=62.68 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=25.7
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
-++|.||||+||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 8888887654
No 143
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.03 E-value=0.00032 Score=64.89 Aligned_cols=31 Identities=32% Similarity=0.510 Sum_probs=27.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..++|.|+||+||||+++.+++.++.+++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4589999999999999999999999877654
No 144
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.02 E-value=0.00032 Score=64.17 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=28.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
..++|.|+||+||||+++.+++.++.+++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 56899999999999999999999998776543
No 145
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.01 E-value=0.00031 Score=62.92 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=27.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..++|.|+||+||||+++.+++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999999877653
No 146
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.01 E-value=0.00077 Score=64.40 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=24.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v 280 (496)
.-++++||+|+||||++..++..+ +..++.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 347889999999999999888877 4455544
No 147
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.00 E-value=0.00031 Score=63.82 Aligned_cols=31 Identities=29% Similarity=0.553 Sum_probs=27.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..++|.|+||+||||+++.+++.++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4689999999999999999999998776554
No 148
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.99 E-value=0.00034 Score=62.90 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=25.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHh-hhcceeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT-ECKTTFFN 279 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~-~l~~~~i~ 279 (496)
.-++|.|+||+||||+++.+++ ..+..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4689999999999999999998 56655544
No 149
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.99 E-value=0.00035 Score=67.72 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.7
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
-++|.||||+||||+|+.+|..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988877664
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.98 E-value=0.0014 Score=65.49 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=44.0
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc-------------------c-ccCChHHHHHHHHHH
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------------------K-WRGDSEKLIKVLFEL 303 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~-------------------~-~~G~~e~~l~~lf~~ 303 (496)
.++.-+++.||+|+||||++..+|..+ +..+..+++..... . ..+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345678999999999999999999876 44454444321110 0 011222222334455
Q ss_pred hhhcCCcceehhhH
Q 010975 304 ARHHAPSTIFLDEI 317 (496)
Q Consensus 304 a~~~~p~ILfIDEI 317 (496)
+....|.+++||+.
T Consensus 182 a~~~~~dvvIiDtp 195 (306)
T 1vma_A 182 ALARNKDVVIIDTA 195 (306)
T ss_dssp HHHTTCSEEEEEEC
T ss_pred HHhcCCCEEEEECC
Confidence 55567789999977
No 151
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.98 E-value=0.00038 Score=65.45 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=27.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..++|.|+||+||||+++.+++.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 5689999999999999999999999876654
No 152
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.97 E-value=0.00032 Score=71.52 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=37.5
Q ss_pred cchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 220 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 220 G~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..+.+.+.+.+.+...+... ...+++|.||||+||||+++++|..++.+|+.+
T Consensus 3 ~~~~L~~~il~~l~~~i~~g--------~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDN--------YRVCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTC--------SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccC--------CeeEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 44555566555554332211 124699999999999999999999999988653
No 153
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.96 E-value=0.00037 Score=63.30 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=23.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.-++|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 154
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.96 E-value=0.00061 Score=67.41 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=29.9
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
+..++|.||||+||||+++.++.+++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4568999999999999999999988555666665444
No 155
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.93 E-value=0.002 Score=67.54 Aligned_cols=70 Identities=19% Similarity=0.135 Sum_probs=47.5
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc-------------------cc-cCChHHHHHHHHHHh
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------------------KW-RGDSEKLIKVLFELA 304 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~-------------------~~-~G~~e~~l~~lf~~a 304 (496)
++.-+++.|++|+||||++..+|..+ |..+..+++..... .. .......+...++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999876 55555555432211 01 122344456667777
Q ss_pred hhcCCcceehhhH
Q 010975 305 RHHAPSTIFLDEI 317 (496)
Q Consensus 305 ~~~~p~ILfIDEI 317 (496)
....+.+++||..
T Consensus 179 ~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 KSKGVDIIIVDTA 191 (443)
T ss_dssp HHTTCSEEEEECC
T ss_pred HhCCCCEEEEECC
Confidence 7766789999976
No 156
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.93 E-value=0.00033 Score=85.13 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=53.0
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc----cC--------ChHHHHHHHHHHhhh---
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG--------DSEKLIKVLFELARH--- 306 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~----~G--------~~e~~l~~lf~~a~~--- 306 (496)
++.+...++|.|+||+|||+||..+|..+ +.++++++..+..... .| ..+..+..+++.++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 35566779999999999999999999877 4468888775544332 11 011123333333332
Q ss_pred -cCCcceehhhHHHHHh
Q 010975 307 -HAPSTIFLDEIDAIIS 322 (496)
Q Consensus 307 -~~p~ILfIDEID~L~~ 322 (496)
..|++|+||.++.+..
T Consensus 808 ~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 5789999999998864
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.93 E-value=0.0012 Score=62.38 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=26.4
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 281 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~ 281 (496)
+.+..-++|+||||+|||+++..++... +.+++.++
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455678999999999999998887654 44444443
No 158
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.92 E-value=0.00048 Score=63.74 Aligned_cols=31 Identities=29% Similarity=0.603 Sum_probs=27.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.-++|.|+||+||||+++.++..+|..++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 4689999999999999999999998776653
No 159
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.89 E-value=0.00045 Score=63.30 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.-++|.|+||+||||+++.+++.++.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4689999999999999999999998766654
No 160
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.89 E-value=0.00041 Score=62.77 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=22.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
..++|.|+||+||||+++.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999998877
No 161
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.88 E-value=0.00045 Score=61.63 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=26.7
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.++|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 478999999999999999999999877653
No 162
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.88 E-value=0.00049 Score=62.47 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=27.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..++|.|+||+||||+++.+++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4689999999999999999999998776654
No 163
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.87 E-value=0.00044 Score=64.67 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=26.3
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.++|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998776654
No 164
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.87 E-value=0.00046 Score=65.28 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=27.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..++|.|+||+||||+++.+++.++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5689999999999999999999998877654
No 165
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.86 E-value=0.00065 Score=61.20 Aligned_cols=30 Identities=30% Similarity=0.553 Sum_probs=26.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
..++|.||||+||||+++.++..+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 468999999999999999999988766554
No 166
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.86 E-value=0.00056 Score=65.06 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=27.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..++|.|+||+||||+++.|++.++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4699999999999999999999999776654
No 167
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.85 E-value=0.00087 Score=68.48 Aligned_cols=77 Identities=26% Similarity=0.341 Sum_probs=48.9
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccccc----cC-----------ChHHHHHHHHH-Hhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG-----------DSEKLIKVLFE-LARH 306 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~~~----~G-----------~~e~~l~~lf~-~a~~ 306 (496)
+++..-++|+||||+|||++|..++... +.+++.++........ .| .....+..++. .++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 4455679999999999999999998765 5567777763321110 00 11122233332 2234
Q ss_pred cCCcceehhhHHHHHh
Q 010975 307 HAPSTIFLDEIDAIIS 322 (496)
Q Consensus 307 ~~p~ILfIDEID~L~~ 322 (496)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 5678999999988753
No 168
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.85 E-value=0.00047 Score=64.38 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.3
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.++|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998776654
No 169
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.85 E-value=0.00043 Score=65.16 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=27.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..++|.||||+||||+++.+|+.++..++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5689999999999999999999999766543
No 170
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.83 E-value=0.00055 Score=68.46 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.1
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~ 272 (496)
+++..-++|+||||+|||+++..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455566999999999999999999864
No 171
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.83 E-value=0.0006 Score=62.99 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=27.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.-++|.|+||+||||+++.+++.++.+++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 46899999999999999999999988766543
No 172
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.82 E-value=0.00062 Score=65.43 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.8
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
+..++|.||||+||||+++.+++.++.+++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 45799999999999999999999998766654
No 173
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.0043 Score=58.53 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=27.1
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeee
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNIS 281 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~ 281 (496)
++++..-++|+|+||+|||++|..+|... +.+++.++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 34555679999999999999998876542 45555554
No 174
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.81 E-value=0.00042 Score=71.97 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=21.2
Q ss_pred cCccceeeeeCCCCChhHHHHHHHH
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVA 270 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA 270 (496)
+.+..-++|+||||+|||+|++.++
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 4555669999999999999999776
No 175
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.80 E-value=0.00065 Score=69.16 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=29.4
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---------cceeeeeecc
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS 283 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---------~~~~i~v~~s 283 (496)
+.+..-+.|+||||+|||+|++.++... +..+++++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 4555668999999999999999999876 2355666653
No 176
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.79 E-value=0.00062 Score=64.03 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=27.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
..++|.|+||+||||+++.+++.++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877655
No 177
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.78 E-value=0.00065 Score=68.07 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=31.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
+-++|.||+|+|||+|+..+|+.++..++..+...+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 4588999999999999999999999888887765443
No 178
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.72 E-value=0.00085 Score=63.81 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=29.7
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
..++-++|.||||+||+|.|+.|++.+|.+.+ +.+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 34467889999999999999999999986554 444443
No 179
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.72 E-value=0.00095 Score=61.84 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=25.7
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
+..+.|.||+|+||||+++.++..+|..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 356889999999999999999999876544
No 180
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.71 E-value=0.0026 Score=57.56 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.4
Q ss_pred ccceeeeeCCCCChhHHHHHHH
Q 010975 248 PWKGILLFGPPGTGKTMLAKAV 269 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAral 269 (496)
++.-+.|.||+|+||||+++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3456899999999999999953
No 181
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.71 E-value=0.00062 Score=73.93 Aligned_cols=31 Identities=35% Similarity=0.368 Sum_probs=25.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v 280 (496)
..++|.||||||||+++.+++..+ +.++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 568999999999999999998866 4455444
No 182
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.67 E-value=0.0034 Score=67.82 Aligned_cols=74 Identities=12% Similarity=0.238 Sum_probs=49.3
Q ss_pred cceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc--cccHHHHHHhhhhhcccCCCHH
Q 010975 310 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 387 (496)
Q Consensus 310 ~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~--~Ld~aL~rRf~~~I~~~~P~~e 387 (496)
-+|+|||++.+..... +.+...+..... ..+.-.+.+|.+|.+|. .++..++.-|...|.+...+..
T Consensus 345 ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar--~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---------KKVEELIARIAQ--KARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC---------HHHHHHHHHHHH--HCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh---------HHHHHHHHHHHH--HHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 4899999998865321 111111212111 12333466777888886 7999999989888999999988
Q ss_pred HHHHHHH
Q 010975 388 ARRAMFE 394 (496)
Q Consensus 388 eR~~Il~ 394 (496)
+...++-
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8887774
No 183
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.65 E-value=0.0034 Score=58.69 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=63.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec--c-------cccccc-----------c--CC----hHHHHHHH
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA--S-------SVVSKW-----------R--GD----SEKLIKVL 300 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~--s-------~l~~~~-----------~--G~----~e~~l~~l 300 (496)
..+++++++|.||||+|-++|-.. |.++..+.. + .+.... . .. ........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 358899999999999999998876 555554421 1 111111 0 00 01223334
Q ss_pred HHHhhh----cCCcceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcccccHHHHHHhh
Q 010975 301 FELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE 376 (496)
Q Consensus 301 f~~a~~----~~p~ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~~Ld~aL~rRf~ 376 (496)
+..++. ....+|+|||+.....-.-- . .+.++..+. .++..+-||.|+|.+ ++.|...-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l--~--------~~ev~~~l~---~Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL--P--------LEEVISALN---ARPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS--C--------HHHHHHHHH---TSCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC--C--------HHHHHHHHH---hCcCCCEEEEECCCC---cHHHHHhCc
Confidence 444433 45789999999775432110 0 123444444 334445567788875 566666555
Q ss_pred hhh
Q 010975 377 KRI 379 (496)
Q Consensus 377 ~~I 379 (496)
.+-
T Consensus 173 ~VT 175 (196)
T 1g5t_A 173 TVS 175 (196)
T ss_dssp EEE
T ss_pred cee
Confidence 433
No 184
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.63 E-value=0.00077 Score=63.07 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.5
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.++|.|+||+||||+++.+++.++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998776654
No 185
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.63 E-value=0.00084 Score=60.88 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=22.5
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
-++|.|+||+||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999886
No 186
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.63 E-value=0.0014 Score=66.84 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=42.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeec-ccc--------c-ccccCChHHHHHHHHHHhhhcCCcceehh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSV--------V-SKWRGDSEKLIKVLFELARHHAPSTIFLD 315 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~-s~l--------~-~~~~G~~e~~l~~lf~~a~~~~p~ILfID 315 (496)
..+++.||+|+||||+.++++..+. ..++.+.- .++ . ....+.........+..+-...|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 4589999999999999999998763 33332211 111 0 01111111223446666667889999999
Q ss_pred hH
Q 010975 316 EI 317 (496)
Q Consensus 316 EI 317 (496)
|+
T Consensus 204 Ep 205 (356)
T 3jvv_A 204 EM 205 (356)
T ss_dssp CC
T ss_pred CC
Confidence 99
No 187
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.61 E-value=0.0014 Score=60.32 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=27.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh-cceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~ 281 (496)
.-++|.|+||+||||+++.+++.+ |.+++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 568999999999999999999998 57776554
No 188
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.61 E-value=0.0012 Score=60.05 Aligned_cols=31 Identities=26% Similarity=0.074 Sum_probs=27.0
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~ 281 (496)
-++|.|+||+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 77777654
No 189
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.60 E-value=0.0012 Score=64.00 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=29.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh---hcceeeeeecccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSV 285 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~---l~~~~i~v~~s~l 285 (496)
.-++|.|+||+||||+++.++.. .|.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 46899999999999999999998 6777775555444
No 190
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.60 E-value=0.0083 Score=64.08 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=47.7
Q ss_pred ceehhhHHHHHhhhcCCcchhHHhhhhhhhhhhhccCccccCcEEEEEeccCCcc--cccHHHHHHhhhhhcccCCCHHH
Q 010975 311 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTEA 388 (496)
Q Consensus 311 ILfIDEID~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIatTn~p~--~Ld~aL~rRf~~~I~~~~P~~ee 388 (496)
+|+|||...+..... .....++..+... .+.-.+.+|.+|.+|. .++..++..|...|.+...+..+
T Consensus 300 vlvIDE~~~ll~~~~------~~~~~~l~~Lar~-----gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 300 VVLVDEFADLMMTVG------KKVEELIARLAQK-----ARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEETHHHHHHHHH------HHHHHHHHHHHHH-----CGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHH
T ss_pred EEEEeCHHHHHhhhh------HHHHHHHHHHHHH-----hhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHH
Confidence 899999988764210 1111122222111 1222355667788875 58888999998889999999999
Q ss_pred HHHHHHh
Q 010975 389 RRAMFES 395 (496)
Q Consensus 389 R~~Il~~ 395 (496)
...++..
T Consensus 369 sr~ilg~ 375 (512)
T 2ius_A 369 SRTILDQ 375 (512)
T ss_dssp HHHHHSS
T ss_pred HHHhcCC
Confidence 9888764
No 191
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.60 E-value=0.0011 Score=64.66 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=41.3
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeecccc----------cc-cccCChHHHHHHHHHHhhhcCCccee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV----------VS-KWRGDSEKLIKVLFELARHHAPSTIF 313 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s~l----------~~-~~~G~~e~~l~~lf~~a~~~~p~ILf 313 (496)
...++|.||+|+||||++++++..+. ..++ +....+ .. ...|.....++..+..+-...|.+|+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 35689999999999999999998663 2222 111110 00 01111112234555555556889999
Q ss_pred hhhH
Q 010975 314 LDEI 317 (496)
Q Consensus 314 IDEI 317 (496)
+||.
T Consensus 104 lDEp 107 (261)
T 2eyu_A 104 VGEM 107 (261)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 9998
No 192
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.60 E-value=0.0011 Score=60.76 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=26.0
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
.++|.|+||+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987664
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.58 E-value=0.0014 Score=59.24 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=30.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 284 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~ 284 (496)
..+.|.|++|+||||+++.++..+ |.+++.++...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 468899999999999999999988 88888776543
No 194
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.57 E-value=0.012 Score=61.53 Aligned_cols=70 Identities=19% Similarity=0.129 Sum_probs=45.1
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----------c------c---cC-ChHHHHHHHHHHh
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------W---RG-DSEKLIKVLFELA 304 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----------~------~---~G-~~e~~l~~lf~~a 304 (496)
++.-+++.||+|+||||++..+|..+ |.++..+++..... . + .+ .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678999999999999999999877 55555544321110 0 0 01 1223344556666
Q ss_pred hhcCCcceehhhH
Q 010975 305 RHHAPSTIFLDEI 317 (496)
Q Consensus 305 ~~~~p~ILfIDEI 317 (496)
....+.+++||..
T Consensus 176 ~~~~~DvvIIDTa 188 (433)
T 3kl4_A 176 VKNKMDIIIVDTA 188 (433)
T ss_dssp TTTTCSEEEEEEC
T ss_pred HhcCCCEEEEECC
Confidence 6567789999977
No 195
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.57 E-value=0.0011 Score=62.39 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=27.0
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
.++|.||||+||+|.|+.|++.+|.+.+ +.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHH
Confidence 3788999999999999999999987654 44444
No 196
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.55 E-value=0.0012 Score=63.12 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=25.8
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
+..++|.||||+||||+++.|++.+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457999999999999999999998876543
No 197
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.54 E-value=0.0011 Score=62.68 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=25.9
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.++|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999998765543
No 198
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.50 E-value=0.0015 Score=60.49 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=28.1
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 285 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l 285 (496)
+.-+.|.||+|+||||+++.++..+ |...+.++...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3568899999999999999999988 443345554333
No 199
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.48 E-value=0.0012 Score=60.98 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=26.2
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.+.|.|++|+||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 887776654
No 200
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.46 E-value=0.0016 Score=59.32 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.7
Q ss_pred eeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 281 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~ 281 (496)
+.|.|++|+||||+++.+++.+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999998 88877543
No 201
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.45 E-value=0.0016 Score=61.04 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
..+.|.||+|+||||+++.++..+|.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 358899999999999999999999876654
No 202
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.45 E-value=0.001 Score=66.76 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=31.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeeccccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 286 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l~ 286 (496)
+-++|.||+|+|||+|+..+|+.++..++..+.-.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvY 40 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVY 40 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGB
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccce
Confidence 3578999999999999999999999888777655443
No 203
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.44 E-value=0.0077 Score=59.77 Aligned_cols=35 Identities=31% Similarity=0.373 Sum_probs=27.2
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeec
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 282 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~ 282 (496)
++..++|.||+|+||||++..+|..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 44678999999999999999999765 445555544
No 204
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.44 E-value=0.0011 Score=61.45 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=26.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.-++|.|+||+||||+++.+++.++.+.+.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 5689999999999999999999987654443
No 205
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.39 E-value=0.0019 Score=65.45 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=29.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeecc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 283 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s 283 (496)
+-++|.||+|+|||+|+..||+.++..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4689999999999999999999999888776543
No 206
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.36 E-value=0.0013 Score=60.94 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=24.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
.-++|.|+||+||||+++.+++.++...+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 56899999999999999999998865433
No 207
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.35 E-value=0.0022 Score=77.11 Aligned_cols=78 Identities=23% Similarity=0.272 Sum_probs=50.6
Q ss_pred ccCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccccc----cccCC--------hHHHHHHHHHHh----h
Q 010975 245 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRGD--------SEKLIKVLFELA----R 305 (496)
Q Consensus 245 ~~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~~----~~~G~--------~e~~l~~lf~~a----~ 305 (496)
++.+...++|+||||+|||+||..+|... +.++..++..+... ...|. .+..+..+++.+ +
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35566779999999999999999998876 44677766543321 11110 001122333333 3
Q ss_pred hcCCcceehhhHHHHHh
Q 010975 306 HHAPSTIFLDEIDAIIS 322 (496)
Q Consensus 306 ~~~p~ILfIDEID~L~~ 322 (496)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 46789999999998863
No 208
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0018 Score=62.92 Aligned_cols=32 Identities=34% Similarity=0.559 Sum_probs=28.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
..+.|.|++|+||||+++.+|..++.+++..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 57999999999999999999999998877653
No 209
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.34 E-value=0.0018 Score=65.06 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=47.4
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh-----cceeeeeeccccccc----cc------------CChHHHHHHHHHH-
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK----WR------------GDSEKLIKVLFEL- 303 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l-----~~~~i~v~~s~l~~~----~~------------G~~e~~l~~lf~~- 303 (496)
+.+. -++|+||||+|||+|+-.++... +..+++++..+-... .. ...+.....+.+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 3444 58999999999999988877654 456777776432210 00 1122220222222
Q ss_pred --hhhcCCcceehhhHHHHHh
Q 010975 304 --ARHHAPSTIFLDEIDAIIS 322 (496)
Q Consensus 304 --a~~~~p~ILfIDEID~L~~ 322 (496)
.+...|.+|+||-|..+.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 3556789999999988864
No 210
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.32 E-value=0.0018 Score=59.60 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=23.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKT 275 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~ 275 (496)
.-++|.|+||+||||+++.+++.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999998876
No 211
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.30 E-value=0.002 Score=61.66 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=25.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~ 281 (496)
-.+++.|+||+||||++-.+|..+ |..++.++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 359999999999999999998876 55554443
No 212
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.30 E-value=0.0018 Score=60.00 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=24.9
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.+.|.||+|+||||+++.++. +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 478999999999999999998 78776643
No 213
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.30 E-value=0.0018 Score=59.62 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.3
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.+.|.|++|+||||+++.++..+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999997776543
No 214
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.27 E-value=0.002 Score=59.76 Aligned_cols=24 Identities=42% Similarity=0.696 Sum_probs=21.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.|+|.||+|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998775
No 215
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.27 E-value=0.002 Score=59.00 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=26.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
+..+.|.|++|+||||+++.+++. |.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 356899999999999999999998 7766644
No 216
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.22 E-value=0.0022 Score=59.64 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=27.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
.+.|+|++|+||||+++.+++.+|.+++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4789999999999999999999888776644
No 217
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.18 E-value=0.003 Score=60.68 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=26.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
..+.|.||||+||||+++.+++.++.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999876654
No 218
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.18 E-value=0.0028 Score=58.68 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=27.1
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh-cceeeeee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 281 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~ 281 (496)
+.-+.|.|++|+||||+++.++..+ +..++..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 3458899999999999999999988 66665544
No 219
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.17 E-value=0.0075 Score=62.69 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=27.1
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
+.-++|+|+||+||||+++.++..++..++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 45688999999999999999999988666543
No 220
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.16 E-value=0.0035 Score=57.06 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=26.8
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeec
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA 282 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~ 282 (496)
+..++|.|+||+||||+++.++..++ .++..++.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 35689999999999999999999884 33444543
No 221
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.15 E-value=0.002 Score=66.03 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=41.7
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeecc-cc--------ccc-ccCChHHHHHHHHHHhhhcCCcceeh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS-SV--------VSK-WRGDSEKLIKVLFELARHHAPSTIFL 314 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s-~l--------~~~-~~G~~e~~l~~lf~~a~~~~p~ILfI 314 (496)
...++|.||+|+||||++++++..+. ..++.+... ++ ... ..|.....+...+..+-...|.+|++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ill 215 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 215 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEE
Confidence 35689999999999999999998763 233222210 00 000 01111112344455555568999999
Q ss_pred hhH
Q 010975 315 DEI 317 (496)
Q Consensus 315 DEI 317 (496)
||+
T Consensus 216 dE~ 218 (372)
T 2ewv_A 216 GEM 218 (372)
T ss_dssp SCC
T ss_pred CCC
Confidence 998
No 222
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.13 E-value=0.0019 Score=65.13 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=44.3
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeeccc-cc-----cc--ccCChHHHHHHHHHHhhhcCCcceehhhHH
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VV-----SK--WRGDSEKLIKVLFELARHHAPSTIFLDEID 318 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~-l~-----~~--~~G~~e~~l~~lf~~a~~~~p~ILfIDEID 318 (496)
...++|.||+|+||||++++++.... ...+.++... +. .. +........+..+..+-...|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 35799999999999999999999773 2233333221 10 00 110011234455566666789999999983
No 223
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.12 E-value=0.001 Score=69.00 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=28.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
+-++|.||+|+|||+|+..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 457899999999999999999999887766554
No 224
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.09 E-value=0.0028 Score=58.76 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=23.7
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
++.-++|.||||+||||+++.++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345689999999999999999999874
No 225
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.08 E-value=0.0036 Score=59.81 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=26.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
+.++++||+|+|||.++..++...+.+++.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 358999999999999999998888666655543
No 226
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.04 E-value=0.0046 Score=59.39 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=29.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhccee--------eeeeccccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTF--------FNISASSVV 286 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~--------i~v~~s~l~ 286 (496)
.-|.|.|++|+||||+++.++..++.++ ..++..++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4588999999999999999999998763 356665554
No 227
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.00 E-value=0.0043 Score=59.81 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=26.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
..+.|.||+|+||||+++.+++.+|..++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 458899999999999999999999876653
No 228
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.99 E-value=0.0032 Score=61.82 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=26.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh-cceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l-~~~~i~v~ 281 (496)
.-++|.|+||+||||+++.+++.+ +..++..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 458999999999999999999974 66655443
No 229
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.99 E-value=0.0038 Score=58.26 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=26.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.-+.|.|++|+||||+++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4688999999999999999998 88776654
No 230
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.98 E-value=0.0034 Score=57.67 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.5
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.-+.|.||+|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568899999999999999999977
No 231
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.94 E-value=0.0041 Score=58.00 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=28.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeeccc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS 284 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s~ 284 (496)
+..++|.|+||+||||+++.++..++ .+++.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 35688999999999999999999875 4466665433
No 232
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.91 E-value=0.0077 Score=63.22 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=28.4
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeec
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 282 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~ 282 (496)
+.+..-++|.|+||+|||+++..+|... |.+++.++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4555669999999999999999998865 445665553
No 233
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.91 E-value=0.004 Score=58.05 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=27.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~ 281 (496)
..+.|.|++|+|||++++.++..+|.+++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 35889999999999999999999998776543
No 234
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.88 E-value=0.005 Score=57.79 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=29.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeeeecccc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 285 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~l 285 (496)
.++++|.||+|+|||++|..+++..+ +++..+...+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 46799999999999999999999876 6666554433
No 235
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.87 E-value=0.0045 Score=56.38 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.8
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKT 275 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~ 275 (496)
-++|.||+|+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 236
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.86 E-value=0.0046 Score=58.71 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=27.5
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
+..+.|.|++|+||||+++.++..+|.+++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 34688999999999999999999999776643
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.85 E-value=0.0043 Score=57.90 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=23.0
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
+.-+.|.||+|+||||+++.++..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999999874
No 238
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.85 E-value=0.0045 Score=62.77 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=28.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
.-++|.||+|+|||++|+.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 358899999999999999999999877666553
No 239
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.81 E-value=0.015 Score=66.43 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.2
Q ss_pred cceeeeeCCCCChhHHHHHHHHh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~ 271 (496)
..-++|+||.|+||||+.|.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 34589999999999999999875
No 240
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.80 E-value=0.011 Score=63.40 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=34.9
Q ss_pred hcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHh
Q 010975 219 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 219 iG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~ 271 (496)
+|.+..+++|.+.+...- ....+.+.|+|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999884321 01235688999999999999999996
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.77 E-value=0.0047 Score=56.16 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
+-+.|.||+|+|||||++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998653
No 242
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.75 E-value=0.0062 Score=59.83 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=25.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.-|.|+|++|+||||+++.++ .+|.+++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 458999999999999999999 678776554
No 243
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.69 E-value=0.0068 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.2
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999999885
No 244
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.69 E-value=0.012 Score=67.69 Aligned_cols=44 Identities=27% Similarity=0.266 Sum_probs=35.1
Q ss_pred hhcchHHHHHHhhhhcccccCccccccccCccceeeeeCCCCChhHHHHHHHHhh
Q 010975 218 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 218 liG~e~vk~~L~e~l~~~~~~~~~~~~~~~~~~~vLL~GPpGtGKT~LAralA~~ 272 (496)
.+|.+..+++|.+.+... ...+-+.|+||.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 389999999998887431 11256889999999999999999863
No 245
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.62 E-value=0.051 Score=57.68 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.5
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..+.-++|.||+|+||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 445568899999999999999999876
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.62 E-value=0.006 Score=55.96 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.-+.|.||+|+||||+++.++....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998763
No 247
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.54 E-value=0.0075 Score=55.80 Aligned_cols=29 Identities=31% Similarity=0.329 Sum_probs=24.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc--ceee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK--TTFF 278 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~--~~~i 278 (496)
.-+.|.||+|+||||+++.++..++ ..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 4588999999999999999999887 4444
No 248
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.52 E-value=0.012 Score=61.68 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=28.4
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeec
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 282 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~ 282 (496)
+.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4555668999999999999999998754 445665554
No 249
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.42 E-value=0.0075 Score=64.47 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=43.2
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeeccc-cccc-----------ccCChHHHHHHHHHHhhhcCCcceeh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVSK-----------WRGDSEKLIKVLFELARHHAPSTIFL 314 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s~-l~~~-----------~~G~~e~~l~~lf~~a~~~~p~ILfI 314 (496)
+.++++.||+|+||||++++++..+. ...+.+.... +.-. ..+.....+...+..+-...|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 35699999999999999999999773 3344443221 1100 00111112344555566678999999
Q ss_pred hhH
Q 010975 315 DEI 317 (496)
Q Consensus 315 DEI 317 (496)
+|+
T Consensus 340 gEi 342 (511)
T 2oap_1 340 GEV 342 (511)
T ss_dssp SCC
T ss_pred CCc
Confidence 987
No 250
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.40 E-value=0.098 Score=51.74 Aligned_cols=34 Identities=32% Similarity=0.178 Sum_probs=26.9
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
+.-+++.|++|+||||++..+|..+ +.++..+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4568889999999999999999876 555555544
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.39 E-value=0.007 Score=56.07 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.8
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
++.+.|.||+|+|||||++.++...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999865
No 252
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.35 E-value=0.033 Score=59.34 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=27.1
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
.++.++|.|+||+||||++..+|..+ |.++..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 34679999999999999999999776 555655554
No 253
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.32 E-value=0.0083 Score=55.97 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=27.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
-|.|.|++|+|||++++.+|+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999884
No 254
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.31 E-value=0.0071 Score=56.44 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=25.6
Q ss_pred ceeeeeCCCCChhH-HHHHHHHhhh--cceeeeeec
Q 010975 250 KGILLFGPPGTGKT-MLAKAVATEC--KTTFFNISA 282 (496)
Q Consensus 250 ~~vLL~GPpGtGKT-~LAralA~~l--~~~~i~v~~ 282 (496)
+=.+++||.|+||| .|.+++.+.. +..++.++.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 34789999999999 8999887754 566666653
No 255
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.27 E-value=0.044 Score=55.11 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=23.1
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
++.-+.|.||+|+||||+++.+|..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999999876
No 256
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.26 E-value=0.0081 Score=54.80 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=21.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
+-+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998764
No 257
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.25 E-value=0.029 Score=61.51 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=20.8
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
-.||+||||||||+++-.+..++ +.++..+..
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 46899999999997554444433 445544443
No 258
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.25 E-value=0.025 Score=51.65 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=15.0
Q ss_pred ceeeeeCCCCChhHHHH
Q 010975 250 KGILLFGPPGTGKTMLA 266 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LA 266 (496)
+++++.+|+|+|||..+
T Consensus 39 ~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 57999999999999863
No 259
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.17 E-value=0.025 Score=64.59 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
.-++|+||.|+||||+.|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999954
No 260
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.15 E-value=0.016 Score=53.55 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=25.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~ 281 (496)
.-+.|.||+|+||||+++.++..+ +.+++.++
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 458899999999999999999876 44555443
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.07 E-value=0.0061 Score=56.33 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.8
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
-+.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 262
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.05 E-value=0.035 Score=55.63 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=28.3
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
.++..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 455678999999999999999999876 455555544
No 263
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.00 E-value=0.012 Score=54.98 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=22.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
+-++|.||+|+|||||++.|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998764
No 264
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.95 E-value=0.014 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..-+.|.||.|+|||||++.++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3458899999999999999999977
No 265
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.94 E-value=0.012 Score=54.53 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=23.2
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
+..-+.|.||+|+|||||++.|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 334588999999999999999998774
No 266
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.93 E-value=0.045 Score=54.37 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.7
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445668999999999999999999976
No 267
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.90 E-value=0.014 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+++++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999888777643
No 268
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.89 E-value=0.012 Score=55.28 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=22.7
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.++.-+.|.||+|+|||||++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344568899999999999999999866
No 269
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.83 E-value=0.012 Score=56.31 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.0
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNI 280 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v 280 (496)
.+-|.||||+||||+++.|++.++.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 367899999999999999999998776654
No 270
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.82 E-value=0.026 Score=58.98 Aligned_cols=34 Identities=35% Similarity=0.267 Sum_probs=27.6
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
+..+++.|+||+||||++..+|..+ |.++..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4579999999999999999999977 455655554
No 271
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.79 E-value=0.016 Score=63.30 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=31.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 285 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l 285 (496)
..|+|+|.||+||||+++.+++.+ |.+++.++...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 458999999999999999999999 888888875433
No 272
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.76 E-value=0.071 Score=50.37 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.5
Q ss_pred ceeeeeCCCCChhHHHHH
Q 010975 250 KGILLFGPPGTGKTMLAK 267 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAr 267 (496)
+++++.+|+|+|||...-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 579999999999998643
No 273
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.72 E-value=0.046 Score=57.14 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=28.5
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh----cceeeeeecc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 283 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l----~~~~i~v~~s 283 (496)
+++.+++.|++|+||||++-.+|..+ |.++..+++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45678899999999999999999766 5566666654
No 274
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.66 E-value=0.018 Score=54.80 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=23.2
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
+.-++|.||||+||||+++.+++.++
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999886
No 275
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.63 E-value=0.012 Score=58.17 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=24.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecccc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 285 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s~l 285 (496)
-|.|.||+|+||||+++.+++.++ ..+..+++.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 478999999999999999999886 33444554444
No 276
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.60 E-value=0.017 Score=54.63 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.1
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
++.-+.|.||+|+|||||++.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345688999999999999999998764
No 277
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.59 E-value=0.035 Score=55.23 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+..+.|.||+|+||||+++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999876
No 278
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.58 E-value=0.02 Score=52.76 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=27.8
Q ss_pred eeeeCCCCChhHHHHHHHHhhhcceeeeeeccc
Q 010975 252 ILLFGPPGTGKTMLAKAVATECKTTFFNISASS 284 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l~~~~i~v~~s~ 284 (496)
++++|++|+|||++|+.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 87887777644
No 279
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.57 E-value=0.053 Score=53.55 Aligned_cols=70 Identities=24% Similarity=0.231 Sum_probs=42.9
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeeccccc-----------c-----cc---cC-ChHHHHHHHHHHh
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV-----------S-----KW---RG-DSEKLIKVLFELA 304 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l~-----------~-----~~---~G-~~e~~l~~lf~~a 304 (496)
++..+.+.|++|+||||++..+|..+ +..+..+++.-.. . -+ .+ ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45668888999999999999999876 4444444331100 0 00 01 1223335566666
Q ss_pred hhcCCcceehhhH
Q 010975 305 RHHAPSTIFLDEI 317 (496)
Q Consensus 305 ~~~~p~ILfIDEI 317 (496)
....+.+++||+-
T Consensus 177 ~~~~~D~viiDtp 189 (295)
T 1ls1_A 177 RLEARDLILVDTA 189 (295)
T ss_dssp HHHTCCEEEEECC
T ss_pred HhCCCCEEEEeCC
Confidence 5456789999976
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.53 E-value=0.018 Score=57.44 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=25.6
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATECKTTF 277 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l~~~~ 277 (496)
++...+.|+||+|+|||||++.|+..+...+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 4456799999999999999999999874443
No 281
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.48 E-value=0.019 Score=54.55 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=26.9
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFN 279 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~ 279 (496)
-|.|.|++|||||++++.+|+.+|.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 57899999999999999999999999875
No 282
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.45 E-value=0.013 Score=55.30 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=15.9
Q ss_pred cceeeeeCCCCChhHHHHHHHH-hhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVA-TEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA-~~l 273 (496)
+.-+.|.||+|+||||+++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3458899999999999999999 765
No 283
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.43 E-value=0.02 Score=54.56 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=23.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTT 276 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~ 276 (496)
.-+-|.||+|+||||+++.++..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 457899999999999999999988654
No 284
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.37 E-value=0.023 Score=55.26 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=23.2
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+..-++|+||||+|||||++.++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3444669999999999999999998744
No 285
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.37 E-value=0.12 Score=48.17 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.4
Q ss_pred ceeeeeCCCCChhHHHHH
Q 010975 250 KGILLFGPPGTGKTMLAK 267 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAr 267 (496)
+++++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999997543
No 286
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.35 E-value=0.035 Score=59.34 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=47.0
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecccc----cc------------------cc----c--CChH
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV----VS------------------KW----R--GDSE 294 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s~l----~~------------------~~----~--G~~e 294 (496)
+.+...++|.||||+|||+|++.++... |.+.+.+...+- .. .+ . -...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 3444568999999999999999998765 333433332110 00 00 0 0223
Q ss_pred HHHHHHHHHhhhcCCcceehhhHHHH
Q 010975 295 KLIKVLFELARHHAPSTIFLDEIDAI 320 (496)
Q Consensus 295 ~~l~~lf~~a~~~~p~ILfIDEID~L 320 (496)
...+.++..+...+|.+|+||=+..+
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHH
Confidence 45555666677788999999955555
No 287
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.35 E-value=0.033 Score=56.82 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.9
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 455678999999999999999999976
No 288
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.26 E-value=0.017 Score=55.62 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=24.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh-cceee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC-KTTFF 278 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l-~~~~i 278 (496)
.-|+|.|++|+||||+++.|++.+ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 468899999999999999999998 54444
No 289
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.25 E-value=0.021 Score=55.91 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.0
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-++|.||||+||||+++.++..+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344568999999999999999998866
No 290
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.13 E-value=0.024 Score=60.73 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTT 276 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~ 276 (496)
.-|+|+|.||+||||+++.+++.++..
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 458999999999999999999988543
No 291
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.07 E-value=0.04 Score=54.87 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=28.4
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
+.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 3445569999999999999999998765 456666654
No 292
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.04 E-value=0.064 Score=60.34 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
.-++|+||.|+||||+.|.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45889999999999999999874
No 293
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.02 E-value=0.025 Score=52.28 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=21.0
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 294
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.02 E-value=0.096 Score=53.42 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.3
Q ss_pred ceeeeeCCCCChhHHHHHHH
Q 010975 250 KGILLFGPPGTGKTMLAKAV 269 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAral 269 (496)
+++++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 57999999999999854444
No 295
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.97 E-value=0.029 Score=59.22 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=21.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
..++|+||+|+|||+|++.++....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 4589999999999999999987653
No 296
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.96 E-value=0.028 Score=60.91 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=29.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeeccc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS 284 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s~ 284 (496)
..|+|.|+||+||||+|+.+++.++ .+++.++...
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 4588999999999999999999986 6777776543
No 297
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.94 E-value=0.06 Score=54.46 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=24.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 280 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v 280 (496)
..+.|.|+||+||||++..++..+ |.++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 468999999999999999998876 4444433
No 298
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.87 E-value=0.13 Score=53.69 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=27.1
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
++..+++.|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 45678889999999999999999877 445554443
No 299
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.82 E-value=0.042 Score=57.17 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
..++|.||+|+||||++++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3589999999999999999999773
No 300
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.81 E-value=0.027 Score=53.72 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=23.9
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+...+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445568999999999999999999866
No 301
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.77 E-value=0.037 Score=54.90 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.-+.|.||+|+||||+++.++..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999765
No 302
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.77 E-value=0.036 Score=52.58 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=22.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.-+.|.|++|+||||+++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999999983
No 303
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.76 E-value=0.083 Score=55.95 Aligned_cols=79 Identities=6% Similarity=-0.079 Sum_probs=45.4
Q ss_pred hhhhhCCCCCccchhhcchHHHHHHhhhhc------ccc-cCccc--cccccCccceeeeeCCCCChhHHHHHHHHhhh-
Q 010975 204 RDIIRGSPDVKWESIKGLENAKRLLKEAVV------MPI-KYPKY--FTGLLSPWKGILLFGPPGTGKTMLAKAVATEC- 273 (496)
Q Consensus 204 ~~~~~~~~~~~l~dliG~e~vk~~L~e~l~------~~~-~~~~~--~~~~~~~~~~vLL~GPpGtGKT~LAralA~~l- 273 (496)
........+...+.++...+..+.+.+.+. .+. ..+.+ ...++.+..-++|.|+||+|||+++..+|...
T Consensus 188 ~~~i~~a~~~~~~~i~~~~~~~~~i~~~~~~~~~~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 188 MEQVWNAGPWIPDGVVSALSLRERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp HHHHTTCCCCCCSSEEEGGGGHHHHHHHHHHSCTTCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHhcChHHHHHHHHhhhcccccCCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 444444455555566654455555543221 111 11111 11234555669999999999999999998765
Q ss_pred ---cceeeeeec
Q 010975 274 ---KTTFFNISA 282 (496)
Q Consensus 274 ---~~~~i~v~~ 282 (496)
|.+++.++.
T Consensus 268 ~~~g~~vl~~s~ 279 (503)
T 1q57_A 268 TAMGKKVGLAML 279 (503)
T ss_dssp TTSCCCEEEEES
T ss_pred HhcCCcEEEEec
Confidence 456666654
No 304
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.053 Score=48.72 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..+++.|++|+|||+|+..+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998753
No 305
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.73 E-value=0.029 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.9
Q ss_pred cceeeeeCCCCChhHHHHHHHHhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..++||.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999999999885
No 306
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.72 E-value=0.029 Score=53.62 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.1
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+..-+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445568999999999999999999976
No 307
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.72 E-value=0.034 Score=55.52 Aligned_cols=27 Identities=19% Similarity=0.031 Sum_probs=23.0
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
++.-+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 334588999999999999999999773
No 308
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.60 E-value=0.027 Score=53.38 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.1
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||++.++...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568899999999999999999866
No 309
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.56 E-value=0.053 Score=49.33 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.-+.|.|++|+||||++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999876
No 310
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.50 E-value=0.086 Score=50.93 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..+.|.|+||+|||+|.+++....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 311
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.46 E-value=0.039 Score=54.49 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKT 275 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~ 275 (496)
.-+.|.||+|+||||+++.|+..++.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45889999999999999999998853
No 312
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.45 E-value=0.032 Score=60.19 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=27.7
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhc----ceeeeeeccc
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS 284 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~----~~~i~v~~s~ 284 (496)
+..+.|.|++|+||||++++|+..++ .++..++...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 35689999999999999999999885 3344455433
No 313
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.42 E-value=0.031 Score=58.88 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTT 276 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~ 276 (496)
..|+|.|.||+||||+++.++..++..
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 468999999999999999999987543
No 314
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.41 E-value=0.036 Score=53.13 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=23.9
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+...+.|.||+|+|||||++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445568999999999999999999876
No 315
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.39 E-value=0.036 Score=53.85 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.3
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||++.++...
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444568899999999999999999876
No 316
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.26 E-value=0.041 Score=52.76 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.6
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+ .-+.|.||+|+|||||.+.++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 678899999999999999999876
No 317
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.23 E-value=0.12 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.-+.|.||||+|||||.+.++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999765
No 318
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.19 E-value=0.037 Score=52.57 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.5
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||.|+|||||.+.++...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444568899999999999999999976
No 319
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.17 E-value=0.045 Score=51.70 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=23.3
Q ss_pred eeeeCCCCChhHHHHHHHHhhh---cceeeeee
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 281 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v~ 281 (496)
.+++||.|+|||+.+-.++... +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999888887766 55555553
No 320
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.16 E-value=0.04 Score=49.49 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.7
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhc
Q 010975 251 GILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
-.+|+||.|+|||+++++|...++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998775
No 321
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.15 E-value=0.037 Score=53.52 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.2
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||.|+|||||.+.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999876
No 322
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.14 E-value=0.041 Score=53.38 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=23.9
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+...+.|.||+|+|||||++.++...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3445568999999999999999999865
No 323
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.12 E-value=0.06 Score=54.03 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=22.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.-+.|.||+|+||||+++.++..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999998875
No 324
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.12 E-value=0.091 Score=54.18 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.2
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
...++|.||+|+|||+|++.|++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3569999999999999999999865
No 325
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.11 E-value=0.062 Score=60.26 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=19.3
Q ss_pred cceeeeeCCCCChhHHHHHHHHhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~ 272 (496)
...+++.||+|+|||+++..+...
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999977766543
No 326
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.11 E-value=0.038 Score=52.14 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.1
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||.|+|||||++.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344558899999999999999999876
No 327
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.07 E-value=0.039 Score=51.75 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
.-+.|.||+|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999975
No 328
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.06 E-value=0.044 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..++|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 329
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.04 E-value=0.046 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.-+.|.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999875
No 330
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.04 E-value=0.04 Score=53.05 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.4
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||++.++...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444568899999999999999999976
No 331
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.03 E-value=0.075 Score=56.70 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=24.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKT 275 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~ 275 (496)
..++|.|.+|+||||+++++|+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999974
No 332
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.03 E-value=0.048 Score=47.09 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 333
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.03 E-value=0.044 Score=53.34 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=23.3
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||++.++...
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344568899999999999999999876
No 334
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.02 E-value=0.043 Score=53.57 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.5
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||++.|+...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444568899999999999999999976
No 335
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.02 E-value=0.047 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.1
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||.|+|||||++.++...
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444568899999999999999999963
No 336
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.00 E-value=0.043 Score=52.81 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.5
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~ 272 (496)
.+..-+.|.||+|+|||||++.++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34456889999999999999999986
No 337
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.98 E-value=0.041 Score=52.65 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.1
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||.|+|||||.+.++...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999876
No 338
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.96 E-value=0.042 Score=49.90 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.7
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l 273 (496)
.++|.|++|+|||||++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 339
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.96 E-value=0.065 Score=58.49 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=19.0
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l 273 (496)
..++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999877776544
No 340
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.93 E-value=0.043 Score=52.98 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=23.7
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.+...+.|.||.|+|||||.+.++....
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3445688999999999999999998764
No 341
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.89 E-value=0.043 Score=53.80 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.2
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||++.++...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344558899999999999999999866
No 342
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.89 E-value=0.043 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~ 272 (496)
.++|.|++|+|||+|++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 343
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.87 E-value=0.055 Score=49.80 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..+++.|++|+|||+|+..+....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 344
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.84 E-value=0.049 Score=52.78 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.3
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||.|+|||||.+.++...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 444568899999999999999999876
No 345
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.81 E-value=0.043 Score=53.43 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.2
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||++.++...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344568899999999999999999866
No 346
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.80 E-value=0.036 Score=56.39 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=41.9
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhc--ceeeeeecc-ccc-----c--cccC-C-------hHHHHHHHHHHhhhcCC
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-SVV-----S--KWRG-D-------SEKLIKVLFELARHHAP 309 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~--~~~i~v~~s-~l~-----~--~~~G-~-------~e~~l~~lf~~a~~~~p 309 (496)
+...++|.||+|+||||++++++.... ...+.++.. ++. . .++. + ....++..+..+....|
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 345799999999999999999999773 223333321 110 0 0111 0 11123455555656678
Q ss_pred cceehhhH
Q 010975 310 STIFLDEI 317 (496)
Q Consensus 310 ~ILfIDEI 317 (496)
..++++|+
T Consensus 254 d~~l~~e~ 261 (361)
T 2gza_A 254 TRILLAEL 261 (361)
T ss_dssp SEEEESCC
T ss_pred CEEEEcCc
Confidence 88888886
No 347
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.79 E-value=0.049 Score=52.97 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=23.3
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||.|+|||||++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 444568899999999999999999876
No 348
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.73 E-value=0.05 Score=47.96 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..++|.|++|+|||+|.+.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999873
No 349
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.69 E-value=0.062 Score=54.45 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTT 276 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~ 276 (496)
..+.|.||+|+|||||++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 568999999999999999999987543
No 350
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.67 E-value=0.059 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.-+.|.|++|+||||+++.+++.++
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999884
No 351
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=92.66 E-value=0.18 Score=47.39 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=14.9
Q ss_pred ceeeeeCCCCChhHHHH
Q 010975 250 KGILLFGPPGTGKTMLA 266 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LA 266 (496)
+++++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 57999999999999863
No 352
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.65 E-value=0.065 Score=50.47 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=27.0
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceeeeeec
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 282 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i~v~~ 282 (496)
.|-|+|..||||||+++.++. +|.+++..+.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 588999999999999999998 8988876553
No 353
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.64 E-value=0.049 Score=53.48 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.2
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||.|+|||||++.++...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568899999999999999999876
No 354
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.63 E-value=0.048 Score=52.65 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.2
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.++.-+.|.||+|+|||||.+.++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999876
No 355
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.59 E-value=0.057 Score=46.89 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 356
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.58 E-value=0.087 Score=53.23 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=28.4
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
.+..-++|.|+||+|||+++..+|... +.++..++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344568999999999999999998865 566666654
No 357
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.57 E-value=0.062 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999998763
No 358
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.57 E-value=0.03 Score=58.61 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=19.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
+-.++.|+||||||+++..++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 45789999999999999888764
No 359
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.54 E-value=0.056 Score=47.39 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999764
No 360
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.53 E-value=0.072 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
..+++.|++|+||||++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999998763
No 361
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.49 E-value=0.05 Score=51.82 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=19.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKT 275 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~ 275 (496)
.-+.|.||+|+||||+++.+++.++.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34788999999999999999998843
No 362
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.46 E-value=0.055 Score=55.17 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.0
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344558899999999999999999965
No 363
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.44 E-value=0.094 Score=62.27 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=24.5
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
++++..+.|+||+|+||||+++.+...+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4555679999999999999999999977
No 364
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.43 E-value=0.053 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 365
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.42 E-value=0.08 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.0
Q ss_pred cceeeeeCCCCChhHHHHHHHHhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~ 272 (496)
...|++.|++|+|||+|++.+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999763
No 366
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.38 E-value=0.067 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 367
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.33 E-value=0.16 Score=58.65 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.0
Q ss_pred ceeeeeCCCCChhHHHHHHHH
Q 010975 250 KGILLFGPPGTGKTMLAKAVA 270 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA 270 (496)
..++|+||.|+||||+.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 568899999999999999994
No 368
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.32 E-value=0.042 Score=49.89 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
..+.|.||+|+|||||++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999774
No 369
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.30 E-value=0.059 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~ 272 (496)
.+++.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 370
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.30 E-value=0.065 Score=54.67 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.0
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344558899999999999999999865
No 371
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.30 E-value=0.058 Score=54.75 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.1
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 344568899999999999999999865
No 372
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.27 E-value=0.07 Score=46.40 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
-.+++.|++|+|||+|++.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 373
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.27 E-value=0.093 Score=49.53 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=24.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcce
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKTT 276 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~~ 276 (496)
.-+.|.|++|+||||+++.+++.++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 458899999999999999999999763
No 374
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.27 E-value=0.065 Score=54.60 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.0
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||.+.|+.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 344568899999999999999999865
No 375
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.22 E-value=0.15 Score=49.12 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
+.++|.|+||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999875
No 376
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.21 E-value=0.066 Score=51.28 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.-+.|.|++|+||||+++.+++.++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999884
No 377
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.21 E-value=0.21 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..+.|.|+||+||||++..++..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 568899999999999999998765
No 378
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.21 E-value=0.066 Score=46.46 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 379
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.20 E-value=0.069 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999863
No 380
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.18 E-value=0.062 Score=54.68 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.5
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+..-+.|.||+|+|||||.+.|+...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999999865
No 381
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.18 E-value=0.068 Score=54.88 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.1
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 344558899999999999999999966
No 382
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.18 E-value=0.067 Score=47.74 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..++|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 383
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.17 E-value=0.069 Score=54.69 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.0
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344568899999999999999999865
No 384
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.14 E-value=0.074 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999753
No 385
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.13 E-value=0.098 Score=54.75 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=29.7
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh---cceeeeeecc
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 283 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~s 283 (496)
+.+..-++|.|+||+|||+++..+|... |.++..++..
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 4555669999999999999999998766 5567666543
No 386
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.09 E-value=0.069 Score=58.17 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 569999999999999988877654
No 387
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.04 E-value=0.069 Score=46.59 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.2
Q ss_pred eeeeeCCCCChhHHHHHHHHh
Q 010975 251 GILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~ 271 (496)
.+++.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999974
No 388
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.04 E-value=0.074 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 389
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.03 E-value=0.078 Score=46.65 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 390
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.01 E-value=0.091 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
..+++.|++|+|||+|+..+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 391
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.99 E-value=0.14 Score=50.97 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.-++|.|+.|+||||+++.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999999754
No 392
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.98 E-value=0.043 Score=50.16 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=21.0
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
...+.|.|++|+|||||++.++...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999998643
No 393
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.97 E-value=0.055 Score=47.07 Aligned_cols=22 Identities=41% Similarity=0.751 Sum_probs=19.7
Q ss_pred eeeeeCCCCChhHHHHHHHHhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~ 272 (496)
.+++.|++|+|||+|++.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999999753
No 394
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.96 E-value=0.082 Score=46.52 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999863
No 395
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.95 E-value=0.072 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..++|.|+||+|||+|.+.++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 396
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.90 E-value=0.069 Score=54.65 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.0
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 344568899999999999999999865
No 397
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.89 E-value=0.07 Score=46.40 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999753
No 398
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.87 E-value=0.079 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999863
No 399
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.84 E-value=0.08 Score=45.94 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
-.+++.|++|+|||+|++.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999986
No 400
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.81 E-value=0.066 Score=53.31 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.3
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+...+.|.||+|+|||||++.++..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3455679999999999999999999876
No 401
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.77 E-value=0.084 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
..|++.|++|+|||+|++.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999986
No 402
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.75 E-value=0.22 Score=50.42 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=15.9
Q ss_pred ceeeeeCCCCChhHHHHHH
Q 010975 250 KGILLFGPPGTGKTMLAKA 268 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAra 268 (496)
+++++.+|+|+|||..+-.
T Consensus 75 ~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHH
Confidence 5799999999999976543
No 403
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.71 E-value=0.11 Score=58.37 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=19.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
...++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999877776654
No 404
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.71 E-value=0.072 Score=52.60 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.8
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
+.+..-+.|.||.|+|||||++.++...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3444568899999999999999999876
No 405
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.71 E-value=0.21 Score=48.07 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..++|.|+||+|||+|..++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999863
No 406
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.70 E-value=0.084 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.5
Q ss_pred eeeeeCCCCChhHHHHHHHHhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~ 272 (496)
.+++.|++|+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
No 407
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.70 E-value=0.079 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.4
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
...+.|.||+|+|||||.+.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999999875
No 408
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.69 E-value=0.095 Score=49.76 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=23.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKT 275 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~ 275 (496)
.-+.|.|++|+||||+++.+++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45788899999999999999998765
No 409
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.67 E-value=0.059 Score=54.75 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=22.9
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568899999999999999999865
No 410
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.60 E-value=0.073 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999763
No 411
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.48 E-value=0.091 Score=46.60 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
-.+++.|++|+|||+|++.+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 369999999999999999998643
No 412
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.43 E-value=0.16 Score=60.27 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.5
Q ss_pred cCccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 246 LSPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 246 ~~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
++++..+-|+||+|+|||||++.+.+-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4566679999999999999999999865
No 413
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.42 E-value=0.083 Score=54.41 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.1
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 444568999999999999999999854
No 414
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.42 E-value=0.093 Score=46.02 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..+++.|++|+|||+|++.+...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 415
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.39 E-value=0.085 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
-.+++.|++|+|||+|++.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999985
No 416
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.37 E-value=0.095 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
-.+++.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 369999999999999999888754
No 417
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.33 E-value=0.098 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 418
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.32 E-value=0.14 Score=52.32 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=26.9
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh---cceeeeeec
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 282 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l---~~~~i~v~~ 282 (496)
..++++.||+|+|||++++.++..+ +..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3589999999999999999998765 555555543
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.31 E-value=0.14 Score=47.33 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..+++.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999875
No 420
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.30 E-value=0.11 Score=55.98 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=27.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc---ceeeeeecc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK---TTFFNISAS 283 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~---~~~i~v~~s 283 (496)
..++|+|++|+||||+++.+++.++ .++..++..
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 4588999999999999999999875 355555543
No 421
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.29 E-value=0.094 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 422
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.27 E-value=0.097 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.|++.|++|+|||+|+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 423
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.26 E-value=0.089 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
.-+.|.||.|+||||+++.++..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45889999999999999999987
No 424
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.26 E-value=0.098 Score=47.00 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.|++.|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
No 425
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.25 E-value=0.12 Score=46.23 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.|++.|++|+|||+|+.++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 426
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.24 E-value=0.1 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 427
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.23 E-value=0.089 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 428
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.23 E-value=0.1 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999863
No 429
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.18 E-value=0.27 Score=47.66 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..++|.|.||+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 430
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.16 E-value=0.092 Score=49.38 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.2
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.-|.|.|++|+||||+++.+++.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999883
No 431
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.06 E-value=0.085 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.0
Q ss_pred eeeeeCCCCChhHHHHHHHHhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~ 272 (496)
.+++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999874
No 432
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.05 E-value=0.1 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.6
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l 273 (496)
-.+|+||.|+|||++..+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998766
No 433
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.02 E-value=0.29 Score=50.52 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=14.6
Q ss_pred ceeeeeCCCCChhHHH
Q 010975 250 KGILLFGPPGTGKTML 265 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~L 265 (496)
+.+++.+|+|+|||..
T Consensus 94 ~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 94 RDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCCchHH
Confidence 6799999999999984
No 434
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.00 E-value=0.39 Score=55.98 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.0
Q ss_pred cceeeeeCCCCChhHHHHHHH
Q 010975 249 WKGILLFGPPGTGKTMLAKAV 269 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAral 269 (496)
.+.+++.+|+|+|||..+-..
T Consensus 93 g~dvlv~ApTGSGKTl~~l~~ 113 (1104)
T 4ddu_A 93 GKSFTMVAPTGVGKTTFGMMT 113 (1104)
T ss_dssp TCCEEECCSTTCCHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHH
Confidence 367999999999999955444
No 435
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.99 E-value=0.097 Score=46.46 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 436
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.95 E-value=0.11 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
No 437
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=90.94 E-value=0.25 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=17.6
Q ss_pred cceeeeeCCCCChhHHHH-HHHHh
Q 010975 249 WKGILLFGPPGTGKTMLA-KAVAT 271 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LA-ralA~ 271 (496)
++.+++.||+|+|||..+ -.+..
T Consensus 131 ~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCEEEEECCSSSSHHHHHHHHHHT
T ss_pred CCcEEEEcCCCCchhHHHHHHHHH
Confidence 368999999999999863 33443
No 438
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.94 E-value=0.12 Score=45.60 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999763
No 439
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.92 E-value=0.11 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999753
No 440
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=90.87 E-value=0.41 Score=47.03 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.6
Q ss_pred cceeeeeCCCCChhHHHH
Q 010975 249 WKGILLFGPPGTGKTMLA 266 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LA 266 (496)
++++++.+|+|+|||...
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 478999999999999753
No 441
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.84 E-value=0.12 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 442
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=90.82 E-value=0.21 Score=55.85 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..++|+||.|+||||+.|.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 45889999999999999999874
No 443
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.72 E-value=0.12 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 444
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.69 E-value=0.11 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999775
No 445
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.68 E-value=0.19 Score=47.68 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=25.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh--cceeeeee
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNIS 281 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l--~~~~i~v~ 281 (496)
..+++.|.+|+||||++..+|..+ +.++..++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 458899999999999999999765 55555554
No 446
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.64 E-value=0.12 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 447
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.63 E-value=0.095 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 448
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.61 E-value=0.12 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..|++.|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
No 449
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.60 E-value=0.12 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.6
Q ss_pred eeeeeCCCCChhHHHHHHHHhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~ 272 (496)
.++|.|++|+|||+|++.+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999887764
No 450
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.60 E-value=0.12 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
..+++.|++|+|||+|++.+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999986
No 451
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.59 E-value=0.12 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=19.9
Q ss_pred eeeeeCCCCChhHHHHHHHHhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~ 272 (496)
.|++.|++|+|||+|++.+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5999999999999999998763
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.58 E-value=0.12 Score=46.21 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..|++.|++|+|||+|++++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 453
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.57 E-value=0.12 Score=46.78 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..|++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 454
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.56 E-value=0.17 Score=56.96 Aligned_cols=22 Identities=41% Similarity=0.675 Sum_probs=17.8
Q ss_pred eeeeeCCCCChhHHHHHHHHhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~ 272 (496)
.+++.||||||||+++..+...
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999877666543
No 455
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.54 E-value=0.13 Score=46.50 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..|++.|++|+|||+|++.+...-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999997643
No 456
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=90.53 E-value=0.13 Score=49.51 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.5
Q ss_pred eeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 251 GILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
-+.|+|++|+||||+++.+...+|.+++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~ 30 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVKY 30 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 3679999999999999999998887753
No 457
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.45 E-value=0.098 Score=46.30 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
..+++.|++|+|||+|+..+..
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999874
No 458
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.45 E-value=0.16 Score=50.21 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.-+.|.||+|+|||||+++++ ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 457899999999999999999 553
No 459
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.44 E-value=0.13 Score=52.47 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.1
Q ss_pred CccceeeeeCCCCChhHHHHHHHHhhh
Q 010975 247 SPWKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 247 ~~~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+..-+.|.||+|+|||||++.++...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 444568899999999999999999865
No 460
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.44 E-value=0.13 Score=45.95 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..|++.|++|+|||+|++.+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 461
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.41 E-value=0.16 Score=50.76 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=24.0
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhhcceee
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATECKTTFF 278 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l~~~~i 278 (496)
..+++|.|++|+|||++|.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 468999999999999999999875 44443
No 462
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.41 E-value=0.15 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 463
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.36 E-value=0.12 Score=46.33 Aligned_cols=23 Identities=48% Similarity=0.619 Sum_probs=20.9
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999875
No 464
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.34 E-value=0.51 Score=47.42 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.4
Q ss_pred ceeeeeCCCCChhHHHHH
Q 010975 250 KGILLFGPPGTGKTMLAK 267 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAr 267 (496)
+.+++.+|+|+|||..+-
T Consensus 78 ~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCEEECCCSCSSSHHHHH
T ss_pred CCEEEECCCCCcccHHHH
Confidence 569999999999998743
No 465
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.33 E-value=0.13 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.2
Q ss_pred cceeeeeCCCCChhHHHHHHHHhhh
Q 010975 249 WKGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 249 ~~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..-+.|.||.|+|||||+|.|+...
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3568999999999999999999865
No 466
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.32 E-value=0.13 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..|++.|++|+|||+|++.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 467
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.28 E-value=0.14 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
..|++.|++|+|||+|++.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999975
No 468
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.27 E-value=0.12 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
-.|+|.|++|+|||+|++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 369999999999999999998744
No 469
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.26 E-value=0.14 Score=46.16 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 470
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.25 E-value=0.12 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..|++.|++|+|||+|++.+...
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999763
No 471
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.25 E-value=0.12 Score=45.60 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
..+++.|++|+|||+|++.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999984
No 472
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.23 E-value=0.13 Score=46.43 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.|++.|++|+|||+|++.+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999764
No 473
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.22 E-value=0.14 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
-.+++.|++|+|||+|++.+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999863
No 474
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.20 E-value=0.14 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..|+|.|++|+|||+|+.++....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 469999999999999999998743
No 475
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.18 E-value=0.11 Score=55.35 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.3
Q ss_pred ccceeeeeCCCCChhHHHHHHH
Q 010975 248 PWKGILLFGPPGTGKTMLAKAV 269 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAral 269 (496)
+...++|.||+|+|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4456999999999999999994
No 476
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.15 E-value=0.14 Score=46.40 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..|++.|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999763
No 477
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=90.14 E-value=0.44 Score=49.90 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=18.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
+++++.+|+|+|||..+-..+.+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 57999999999999876655543
No 478
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.05 E-value=0.16 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
..|++.|++|+|||+|++++..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4699999999999999999976
No 479
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.02 E-value=0.13 Score=46.73 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..|++.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999763
No 480
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.99 E-value=0.15 Score=46.46 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..|++.|++|+|||+|+.++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999853
No 481
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.92 E-value=0.14 Score=51.17 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred ccceeeeeCCCCChhHHHHHHHHhhhccee
Q 010975 248 PWKGILLFGPPGTGKTMLAKAVATECKTTF 277 (496)
Q Consensus 248 ~~~~vLL~GPpGtGKT~LAralA~~l~~~~ 277 (496)
...++||.|++|+|||++|-.+... |..+
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~-G~~l 174 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK-NHLF 174 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT-TCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCEE
Confidence 3478999999999999999888663 4443
No 482
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.91 E-value=0.16 Score=45.40 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=20.3
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
..+++.|++|+|||+|++.+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999985
No 483
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.83 E-value=0.15 Score=53.12 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.7
Q ss_pred eeeeCCCCChhHHHHHHHHhh
Q 010975 252 ILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~ 272 (496)
+.|.||+|+|||||++.|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999875
No 484
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.82 E-value=0.14 Score=46.50 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..++|.|++|+|||+|++.+...-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 469999999999999999998743
No 485
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.80 E-value=0.22 Score=46.04 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=23.7
Q ss_pred eeeeCCCCChhHHHHHHHHhhh---cceeeee
Q 010975 252 ILLFGPPGTGKTMLAKAVATEC---KTTFFNI 280 (496)
Q Consensus 252 vLL~GPpGtGKT~LAralA~~l---~~~~i~v 280 (496)
|.|.|+-|+||||.++.+++.+ |.+++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 5678999999999999999988 4555443
No 486
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.79 E-value=0.17 Score=52.53 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=20.2
Q ss_pred eeeeeCCCCChhHHHHHHHHhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~ 272 (496)
.+.|.||+|+|||||.++++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999984
No 487
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.79 E-value=0.2 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
.-+.|.||+|+|||||++.|+....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 4588999999999999999999874
No 488
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.75 E-value=0.11 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
..+++.|++|+|||+|++.+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999975
No 489
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.74 E-value=0.18 Score=51.03 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhcc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECKT 275 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~~ 275 (496)
.-+.|.||+|+|||||++.|+.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45899999999999999999998743
No 490
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.73 E-value=0.1 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=10.0
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998753
No 491
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.70 E-value=0.16 Score=46.08 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
-.++|.|+||+|||+|...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999985
No 492
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.68 E-value=0.14 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999874
No 493
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.67 E-value=0.16 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.8
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhhc
Q 010975 250 KGILLFGPPGTGKTMLAKAVATECK 274 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l~ 274 (496)
..+.|.||+|+|||||+++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4588999999999999999997554
No 494
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.67 E-value=0.18 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~l 273 (496)
..+.|.|+||+|||||.++++..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999754
No 495
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.59 E-value=0.14 Score=46.64 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.6
Q ss_pred ceeeeeCCCCChhHHHHHHHHh
Q 010975 250 KGILLFGPPGTGKTMLAKAVAT 271 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~ 271 (496)
..+++.|++|+|||+|++.+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999964
No 496
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.53 E-value=0.17 Score=46.18 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.7
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|+..+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 497
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.51 E-value=0.35 Score=49.11 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.1
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l 273 (496)
.+.|.|+||+|||||.++++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48899999999999999998753
No 498
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.51 E-value=0.15 Score=46.77 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.4
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..++|.|++|+|||+|++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998763
No 499
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.51 E-value=0.16 Score=45.89 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.1
Q ss_pred ceeeeeCCCCChhHHHHHHHHhh
Q 010975 250 KGILLFGPPGTGKTMLAKAVATE 272 (496)
Q Consensus 250 ~~vLL~GPpGtGKT~LAralA~~ 272 (496)
..+++.|++|+|||+|++.+...
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
No 500
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.49 E-value=0.074 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.6
Q ss_pred eeeeeCCCCChhHHHHHHHHhhh
Q 010975 251 GILLFGPPGTGKTMLAKAVATEC 273 (496)
Q Consensus 251 ~vLL~GPpGtGKT~LAralA~~l 273 (496)
-+.|.||+|+||||+.++|+..+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 35789999999999999999876
Done!