Query 010976
Match_columns 496
No_of_seqs 581 out of 3188
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 4.8E-24 1E-28 215.4 19.3 183 132-349 296-493 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 4.3E-23 9.4E-28 208.5 19.1 218 105-357 293-522 (966)
3 TIGR00990 3a0801s09 mitochondr 99.8 3.8E-18 8.1E-23 186.3 26.4 168 135-346 378-576 (615)
4 TIGR00990 3a0801s09 mitochondr 99.8 5E-18 1.1E-22 185.3 24.6 180 112-345 308-500 (615)
5 KOG1126 DNA-binding cell divis 99.8 2.8E-18 6.2E-23 176.4 18.1 207 87-347 410-626 (638)
6 KOG1126 DNA-binding cell divis 99.8 5.7E-18 1.2E-22 174.1 16.5 194 105-352 360-597 (638)
7 PRK11189 lipoprotein NlpI; Pro 99.8 4.5E-17 9.8E-22 161.5 21.9 198 111-353 39-278 (296)
8 KOG1125 TPR repeat-containing 99.8 7.1E-18 1.5E-22 171.0 16.1 167 131-344 294-530 (579)
9 PRK09782 bacteriophage N4 rece 99.8 9.2E-17 2E-21 180.4 24.2 183 109-346 520-711 (987)
10 KOG1155 Anaphase-promoting com 99.8 7.9E-17 1.7E-21 159.2 20.5 155 132-340 340-494 (559)
11 PRK12370 invasion protein regu 99.7 2.1E-16 4.6E-21 170.0 25.0 185 112-350 275-479 (553)
12 PRK15174 Vi polysaccharide exp 99.7 4.7E-16 1E-20 170.2 27.4 204 106-347 84-353 (656)
13 PRK15174 Vi polysaccharide exp 99.7 3.8E-16 8.1E-21 171.0 24.9 185 108-346 187-386 (656)
14 PRK15359 type III secretion sy 99.7 9.8E-17 2.1E-21 141.7 15.4 129 141-307 12-140 (144)
15 PRK12370 invasion protein regu 99.7 6.3E-16 1.4E-20 166.3 23.5 169 136-349 275-444 (553)
16 PRK09782 bacteriophage N4 rece 99.7 7.9E-16 1.7E-20 172.9 23.1 184 108-346 552-745 (987)
17 COG3063 PilF Tfp pilus assembl 99.7 1E-15 2.3E-20 139.5 19.3 145 129-308 42-188 (250)
18 TIGR02521 type_IV_pilW type IV 99.7 2.7E-15 5.9E-20 141.3 23.1 165 130-348 39-205 (234)
19 PLN02789 farnesyltranstransfer 99.7 2.2E-15 4.7E-20 149.9 21.3 184 109-346 31-217 (320)
20 TIGR02521 type_IV_pilW type IV 99.7 1.6E-14 3.4E-19 136.1 23.6 165 109-308 42-218 (234)
21 PRK11447 cellulose synthase su 99.7 6.4E-15 1.4E-19 171.4 25.3 193 110-347 281-530 (1157)
22 KOG1155 Anaphase-promoting com 99.7 1E-14 2.3E-19 144.3 22.0 199 104-356 336-551 (559)
23 PRK11447 cellulose synthase su 99.7 1.4E-14 3.1E-19 168.5 26.5 194 109-313 362-657 (1157)
24 KOG0547 Translocase of outer m 99.7 4.3E-15 9.4E-20 147.7 17.5 193 110-346 338-571 (606)
25 PRK15359 type III secretion sy 99.6 3.4E-15 7.4E-20 131.9 13.6 126 190-358 13-138 (144)
26 KOG1173 Anaphase-promoting com 99.6 2.9E-14 6.3E-19 144.4 21.0 203 105-354 319-531 (611)
27 PRK11788 tetratricopeptide rep 99.6 7.1E-14 1.5E-18 143.9 24.6 126 186-352 196-322 (389)
28 TIGR02917 PEP_TPR_lipo putativ 99.6 3.5E-14 7.5E-19 160.2 23.7 178 107-339 712-898 (899)
29 PRK11788 tetratricopeptide rep 99.6 6E-14 1.3E-18 144.5 23.3 190 105-348 76-285 (389)
30 PRK10370 formate-dependent nit 99.6 2.9E-14 6.2E-19 132.7 17.5 125 135-294 52-179 (198)
31 TIGR02917 PEP_TPR_lipo putativ 99.6 1.4E-13 3E-18 155.3 25.8 191 109-346 442-669 (899)
32 COG3063 PilF Tfp pilus assembl 99.6 2.3E-14 4.9E-19 130.8 15.2 137 156-346 35-173 (250)
33 PLN02789 farnesyltranstransfer 99.6 1E-13 2.2E-18 137.9 21.4 195 111-346 50-255 (320)
34 PRK11189 lipoprotein NlpI; Pro 99.6 1.3E-13 2.7E-18 136.9 20.9 124 136-294 40-167 (296)
35 KOG0547 Translocase of outer m 99.6 3.8E-14 8.3E-19 141.1 16.8 159 132-344 336-494 (606)
36 TIGR03302 OM_YfiO outer membra 99.6 2.3E-13 4.9E-18 130.4 19.9 164 132-342 43-233 (235)
37 PRK10370 formate-dependent nit 99.6 1.3E-13 2.9E-18 128.2 17.4 121 186-346 55-178 (198)
38 PRK15179 Vi polysaccharide bio 99.5 5.7E-13 1.2E-17 144.7 22.0 151 140-344 70-220 (694)
39 KOG0553 TPR repeat-containing 99.5 8.6E-14 1.9E-18 131.9 13.6 117 158-309 83-199 (304)
40 PF13429 TPR_15: Tetratricopep 99.5 7.4E-14 1.6E-18 137.5 13.3 164 110-308 89-263 (280)
41 KOG1174 Anaphase-promoting com 99.5 1.7E-12 3.7E-17 127.1 21.7 179 133-359 311-518 (564)
42 KOG0624 dsRNA-activated protei 99.5 6.9E-13 1.5E-17 127.0 18.5 179 132-357 48-272 (504)
43 PRK10049 pgaA outer membrane p 99.5 1.6E-12 3.5E-17 145.1 24.0 186 109-348 248-463 (765)
44 KOG0553 TPR repeat-containing 99.5 1.3E-13 2.7E-18 130.8 12.6 109 132-265 91-199 (304)
45 TIGR02552 LcrH_SycD type III s 99.5 5E-13 1.1E-17 116.4 15.6 119 143-296 4-122 (135)
46 TIGR02552 LcrH_SycD type III s 99.5 9E-13 2E-17 114.7 14.3 124 191-354 4-127 (135)
47 KOG1129 TPR repeat-containing 99.5 1E-12 2.2E-17 125.2 14.1 181 129-357 230-440 (478)
48 PF13429 TPR_15: Tetratricopep 99.5 6.6E-13 1.4E-17 130.7 13.0 190 109-353 55-255 (280)
49 KOG2076 RNA polymerase III tra 99.4 9.4E-12 2E-16 132.3 22.1 73 271-362 426-499 (895)
50 COG5010 TadD Flp pilus assembl 99.4 9.1E-12 2E-16 116.2 18.6 166 139-359 50-215 (257)
51 KOG0548 Molecular co-chaperone 99.4 5.6E-12 1.2E-16 127.5 17.8 162 110-306 310-473 (539)
52 PRK10049 pgaA outer membrane p 99.4 7.4E-12 1.6E-16 139.9 20.8 143 133-311 26-168 (765)
53 PRK15363 pathogenicity island 99.4 4.9E-12 1.1E-16 110.7 14.8 108 147-289 25-133 (157)
54 KOG1840 Kinesin light chain [C 99.4 9.4E-12 2E-16 129.5 18.5 174 107-308 208-424 (508)
55 PRK15179 Vi polysaccharide bio 99.4 1.1E-11 2.3E-16 134.9 19.6 135 130-299 94-228 (694)
56 KOG1129 TPR repeat-containing 99.4 3E-12 6.4E-17 122.0 12.5 158 135-346 303-463 (478)
57 TIGR00540 hemY_coli hemY prote 99.4 1.6E-10 3.4E-15 120.1 26.3 207 109-352 95-377 (409)
58 KOG1840 Kinesin light chain [C 99.4 9.8E-12 2.1E-16 129.4 16.7 166 130-342 207-397 (508)
59 KOG0548 Molecular co-chaperone 99.4 4.1E-11 8.8E-16 121.4 20.1 173 118-352 294-466 (539)
60 PF06552 TOM20_plant: Plant sp 99.4 3.3E-12 7.2E-17 113.0 10.8 121 229-357 5-125 (186)
61 KOG0550 Molecular chaperone (D 99.4 6.6E-12 1.4E-16 123.2 13.8 162 129-344 176-353 (486)
62 KOG2002 TPR-containing nuclear 99.4 4.9E-11 1.1E-15 127.7 20.8 197 110-346 176-414 (1018)
63 KOG1173 Anaphase-promoting com 99.4 1.9E-11 4.1E-16 124.2 16.8 179 131-356 287-499 (611)
64 PRK10747 putative protoheme IX 99.4 2.4E-10 5.3E-15 118.2 25.2 205 110-351 96-367 (398)
65 COG5010 TadD Flp pilus assembl 99.4 3.2E-11 6.9E-16 112.6 16.3 143 132-309 76-218 (257)
66 KOG1125 TPR repeat-containing 99.4 6.3E-12 1.4E-16 128.1 12.6 136 138-308 410-557 (579)
67 PLN03088 SGT1, suppressor of 99.3 2E-11 4.3E-16 124.0 16.2 115 159-308 5-119 (356)
68 KOG0624 dsRNA-activated protei 99.3 1.7E-10 3.7E-15 110.8 21.1 211 103-357 111-386 (504)
69 TIGR03302 OM_YfiO outer membra 99.3 4.8E-11 1E-15 114.2 17.8 150 151-346 28-200 (235)
70 KOG3060 Uncharacterized conser 99.3 3.4E-10 7.4E-15 104.9 22.2 168 110-309 64-241 (289)
71 KOG2002 TPR-containing nuclear 99.3 1.9E-10 4E-15 123.4 22.6 225 106-354 460-758 (1018)
72 PRK10747 putative protoheme IX 99.3 2.8E-10 6E-15 117.7 23.7 185 109-341 129-390 (398)
73 KOG3060 Uncharacterized conser 99.3 2.4E-10 5.3E-15 105.9 20.4 162 135-347 65-226 (289)
74 KOG4162 Predicted calmodulin-b 99.3 1.8E-10 3.9E-15 120.9 21.2 103 109-229 405-534 (799)
75 PLN03088 SGT1, suppressor of 99.3 3.9E-11 8.3E-16 122.0 15.4 108 131-263 11-118 (356)
76 PRK15363 pathogenicity island 99.3 3.5E-11 7.7E-16 105.3 12.8 111 197-347 27-138 (157)
77 PRK14574 hmsH outer membrane p 99.3 1.2E-10 2.6E-15 129.0 20.1 159 133-346 45-203 (822)
78 cd05804 StaR_like StaR_like; a 99.3 1.5E-10 3.3E-15 117.7 19.0 162 131-343 52-217 (355)
79 PF06552 TOM20_plant: Plant sp 99.3 1E-10 2.2E-15 103.7 14.9 115 137-255 6-120 (186)
80 TIGR00540 hemY_coli hemY prote 99.3 9.5E-10 2.1E-14 114.3 23.9 199 108-340 128-398 (409)
81 KOG2003 TPR repeat-containing 99.3 8.1E-10 1.8E-14 109.4 21.4 195 112-350 470-698 (840)
82 KOG2003 TPR repeat-containing 99.3 3.1E-10 6.7E-15 112.3 18.5 204 108-346 429-660 (840)
83 COG2956 Predicted N-acetylgluc 99.2 7.1E-10 1.5E-14 106.0 19.2 180 101-310 72-266 (389)
84 KOG0550 Molecular chaperone (D 99.2 1.2E-10 2.7E-15 114.3 13.2 164 108-307 179-368 (486)
85 PRK02603 photosystem I assembl 99.2 7.7E-10 1.7E-14 100.8 17.0 128 153-308 32-166 (172)
86 CHL00033 ycf3 photosystem I as 99.2 5.8E-10 1.3E-14 101.1 15.8 130 136-293 13-154 (168)
87 PRK10153 DNA-binding transcrip 99.2 1.3E-09 2.8E-14 115.4 18.2 131 136-294 356-488 (517)
88 CHL00033 ycf3 photosystem I as 99.2 1.1E-09 2.5E-14 99.2 15.5 104 132-249 45-154 (168)
89 PRK11906 transcriptional regul 99.1 2.9E-09 6.3E-14 107.8 19.3 146 136-307 272-422 (458)
90 PRK14574 hmsH outer membrane p 99.1 1.9E-09 4.2E-14 119.5 19.6 166 108-309 44-219 (822)
91 KOG0495 HAT repeat protein [RN 99.1 6.7E-09 1.5E-13 107.2 21.5 134 110-268 630-772 (913)
92 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.6E-09 3.5E-14 91.5 14.2 107 156-297 2-114 (119)
93 cd05804 StaR_like StaR_like; a 99.1 2.6E-09 5.6E-14 108.6 17.8 160 134-344 18-180 (355)
94 KOG2076 RNA polymerase III tra 99.1 3.7E-09 8E-14 112.9 19.0 133 157-343 140-272 (895)
95 KOG1174 Anaphase-promoting com 99.1 4.6E-09 9.9E-14 103.4 18.1 188 129-346 239-472 (564)
96 COG4235 Cytochrome c biogenesi 99.1 2.5E-09 5.4E-14 102.5 15.7 123 136-293 136-261 (287)
97 PRK11906 transcriptional regul 99.1 7.2E-09 1.6E-13 105.0 19.6 158 148-347 240-407 (458)
98 COG4235 Cytochrome c biogenesi 99.1 3.2E-09 7E-14 101.7 15.8 129 184-349 136-264 (287)
99 cd00189 TPR Tetratricopeptide 99.1 2E-09 4.3E-14 85.2 12.1 99 158-291 2-100 (100)
100 PF13414 TPR_11: TPR repeat; P 99.1 5.4E-10 1.2E-14 85.3 8.2 68 154-246 1-69 (69)
101 PRK10153 DNA-binding transcrip 99.1 6E-09 1.3E-13 110.4 18.9 155 150-349 331-490 (517)
102 PRK02603 photosystem I assembl 99.1 4E-09 8.7E-14 96.0 15.0 116 132-264 45-166 (172)
103 PF13414 TPR_11: TPR repeat; P 99.1 5.5E-10 1.2E-14 85.2 7.9 68 202-290 1-69 (69)
104 KOG1128 Uncharacterized conser 99.1 1.3E-09 2.8E-14 114.0 12.6 194 110-344 410-619 (777)
105 KOG1127 TPR repeat-containing 99.1 7.2E-09 1.6E-13 111.4 18.4 150 135-312 471-649 (1238)
106 PRK14720 transcript cleavage f 99.1 2.8E-09 6.1E-14 117.2 15.7 206 132-350 41-315 (906)
107 COG4783 Putative Zn-dependent 99.0 1.9E-08 4.1E-13 101.5 19.6 125 152-311 302-426 (484)
108 TIGR02795 tol_pal_ybgF tol-pal 99.0 6E-09 1.3E-13 87.9 13.8 110 204-353 2-117 (119)
109 PRK14720 transcript cleavage f 99.0 3.8E-09 8.3E-14 116.2 14.8 167 150-346 25-203 (906)
110 COG2956 Predicted N-acetylgluc 99.0 1E-07 2.2E-12 91.5 22.1 192 107-353 116-323 (389)
111 KOG1156 N-terminal acetyltrans 99.0 2.5E-08 5.4E-13 103.3 19.1 209 111-354 20-261 (700)
112 COG4783 Putative Zn-dependent 99.0 2.7E-08 5.9E-13 100.4 18.2 109 132-265 316-424 (484)
113 KOG1127 TPR repeat-containing 99.0 6.3E-09 1.4E-13 111.8 14.1 80 134-231 574-653 (1238)
114 KOG4162 Predicted calmodulin-b 99.0 8.4E-09 1.8E-13 108.6 14.3 127 132-293 660-788 (799)
115 KOG1128 Uncharacterized conser 99.0 5E-09 1.1E-13 109.7 12.5 163 129-343 405-584 (777)
116 KOG1156 N-terminal acetyltrans 99.0 2.1E-08 4.5E-13 103.8 16.7 143 134-311 19-161 (700)
117 KOG0543 FKBP-type peptidyl-pro 99.0 2.4E-08 5.1E-13 99.0 16.4 117 157-308 209-340 (397)
118 cd00189 TPR Tetratricopeptide 99.0 1.4E-08 3E-13 80.2 12.4 99 206-344 2-100 (100)
119 KOG0543 FKBP-type peptidyl-pro 98.9 1.8E-08 4E-13 99.8 14.6 127 129-289 215-356 (397)
120 PF09976 TPR_21: Tetratricopep 98.9 5.7E-08 1.2E-12 85.8 16.4 135 111-286 5-145 (145)
121 KOG0495 HAT repeat protein [RN 98.9 3E-07 6.5E-12 95.3 21.2 175 106-308 524-734 (913)
122 PRK10866 outer membrane biogen 98.9 1.8E-07 4E-12 89.8 18.8 159 133-309 43-228 (243)
123 PF12569 NARP1: NMDA receptor- 98.9 3.8E-07 8.2E-12 96.3 22.3 199 109-346 15-262 (517)
124 PF13432 TPR_16: Tetratricopep 98.9 9.9E-09 2.1E-13 77.3 7.6 65 208-293 1-65 (65)
125 PF12895 Apc3: Anaphase-promot 98.9 7.3E-09 1.6E-13 82.4 7.1 80 135-233 2-83 (84)
126 PF13432 TPR_16: Tetratricopep 98.8 1.1E-08 2.3E-13 77.1 7.5 65 160-249 1-65 (65)
127 KOG1130 Predicted G-alpha GTPa 98.8 1.2E-08 2.6E-13 100.3 9.2 187 103-308 60-290 (639)
128 PF13525 YfiO: Outer membrane 98.8 2.4E-07 5.3E-12 86.6 17.1 160 132-309 15-194 (203)
129 KOG4648 Uncharacterized conser 98.8 9.9E-09 2.1E-13 98.8 7.2 104 129-257 104-207 (536)
130 KOG1130 Predicted G-alpha GTPa 98.8 9.2E-09 2E-13 101.1 6.8 152 131-310 64-252 (639)
131 PF12895 Apc3: Anaphase-promot 98.8 1.4E-08 3E-13 80.8 6.6 80 184-285 3-84 (84)
132 PRK15331 chaperone protein Sic 98.8 8.7E-08 1.9E-12 84.5 12.1 111 148-294 29-139 (165)
133 KOG4648 Uncharacterized conser 98.8 2.4E-08 5.2E-13 96.2 9.0 109 159-302 100-208 (536)
134 PRK10803 tol-pal system protei 98.8 2.7E-07 5.9E-12 89.4 16.4 106 155-295 141-253 (263)
135 KOG4234 TPR repeat-containing 98.8 7.5E-08 1.6E-12 86.4 11.3 107 159-300 98-209 (271)
136 PF14938 SNAP: Soluble NSF att 98.7 1.9E-07 4.2E-12 92.0 13.8 182 112-346 29-230 (282)
137 KOG4340 Uncharacterized conser 98.7 5E-07 1.1E-11 85.8 15.3 148 133-308 21-193 (459)
138 KOG4234 TPR repeat-containing 98.7 2.7E-07 5.9E-12 82.9 11.8 103 129-256 102-209 (271)
139 PF09976 TPR_21: Tetratricopep 98.7 1.4E-06 2.9E-11 77.0 16.3 113 186-339 27-145 (145)
140 PLN03081 pentatricopeptide (PP 98.7 6.4E-07 1.4E-11 99.6 17.4 64 108-171 269-340 (697)
141 PRK10803 tol-pal system protei 98.7 7.7E-07 1.7E-11 86.3 15.5 113 203-355 141-260 (263)
142 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.3E-07 2.8E-12 95.9 10.3 69 151-237 70-141 (453)
143 PF12688 TPR_5: Tetratrico pep 98.6 7E-07 1.5E-11 75.7 13.0 96 157-287 2-103 (120)
144 PF13525 YfiO: Outer membrane 98.6 4.2E-06 9.1E-11 78.3 19.1 171 155-355 4-184 (203)
145 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.4E-07 3.1E-12 95.6 9.7 69 199-288 70-141 (453)
146 KOG4555 TPR repeat-containing 98.6 1.6E-06 3.5E-11 72.8 13.9 110 132-259 53-171 (175)
147 PRK15331 chaperone protein Sic 98.6 6.4E-07 1.4E-11 79.1 12.0 108 198-346 31-138 (165)
148 PF14559 TPR_19: Tetratricopep 98.6 1.7E-07 3.6E-12 71.1 7.4 66 133-212 2-67 (68)
149 PF04733 Coatomer_E: Coatomer 98.6 4.4E-07 9.4E-12 89.4 11.6 158 132-347 112-271 (290)
150 COG3071 HemY Uncharacterized e 98.6 3.6E-05 7.8E-10 76.3 24.0 209 110-355 96-371 (400)
151 PLN03218 maturation of RBCL 1; 98.6 2.1E-05 4.5E-10 90.2 25.8 173 107-309 516-735 (1060)
152 PF12688 TPR_5: Tetratrico pep 98.6 2.6E-06 5.7E-11 72.2 14.1 108 205-354 2-115 (120)
153 PRK10866 outer membrane biogen 98.5 1E-05 2.2E-10 77.8 19.8 172 154-355 30-218 (243)
154 PF12569 NARP1: NMDA receptor- 98.5 1.2E-05 2.6E-10 85.0 21.7 131 205-356 195-336 (517)
155 PLN03218 maturation of RBCL 1; 98.5 2.5E-05 5.4E-10 89.6 25.7 179 107-312 481-703 (1060)
156 PF13371 TPR_9: Tetratricopept 98.5 5.2E-07 1.1E-11 69.4 8.6 71 162-257 1-71 (73)
157 PF13424 TPR_12: Tetratricopep 98.5 9.4E-08 2E-12 74.7 4.4 75 201-289 2-76 (78)
158 COG4785 NlpI Lipoprotein NlpI, 98.5 5.6E-06 1.2E-10 75.5 16.2 92 133-249 76-167 (297)
159 KOG2376 Signal recognition par 98.5 6.8E-06 1.5E-10 84.8 18.5 153 110-293 58-258 (652)
160 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.7E-06 5.7E-11 86.8 15.0 113 135-285 182-294 (395)
161 COG3071 HemY Uncharacterized e 98.5 3.5E-05 7.6E-10 76.4 22.1 173 107-308 127-376 (400)
162 PF13371 TPR_9: Tetratricopept 98.5 7.4E-07 1.6E-11 68.5 8.4 69 211-300 2-70 (73)
163 PF14559 TPR_19: Tetratricopep 98.5 5E-07 1.1E-11 68.4 7.1 64 183-257 4-67 (68)
164 COG0457 NrfG FOG: TPR repeat [ 98.5 4.6E-05 1E-09 69.6 21.9 181 110-344 71-268 (291)
165 PF13424 TPR_12: Tetratricopep 98.5 2.3E-07 4.9E-12 72.5 5.3 70 153-240 2-78 (78)
166 KOG4555 TPR repeat-containing 98.5 5.9E-06 1.3E-10 69.4 13.7 100 160-294 47-150 (175)
167 KOG3785 Uncharacterized conser 98.5 5.5E-06 1.2E-10 80.6 15.3 173 110-307 34-233 (557)
168 COG0457 NrfG FOG: TPR repeat [ 98.4 3.8E-05 8.3E-10 70.2 19.7 159 132-344 69-234 (291)
169 PLN03077 Protein ECB2; Provisi 98.4 2.8E-05 6.1E-10 88.6 22.3 191 109-308 435-706 (857)
170 KOG4642 Chaperone-dependent E3 98.4 1E-06 2.2E-11 81.3 8.1 90 178-288 18-107 (284)
171 COG4785 NlpI Lipoprotein NlpI, 98.4 1.2E-06 2.5E-11 79.9 7.8 104 156-294 65-168 (297)
172 PF14938 SNAP: Soluble NSF att 98.4 9.4E-07 2E-11 87.1 7.9 154 105-293 42-230 (282)
173 COG4700 Uncharacterized protei 98.4 5.4E-05 1.2E-09 67.6 17.8 137 137-310 71-210 (251)
174 PLN03081 pentatricopeptide (PP 98.4 5.2E-05 1.1E-09 84.5 22.3 114 130-268 267-410 (697)
175 KOG2376 Signal recognition par 98.3 2.5E-05 5.5E-10 80.7 17.2 136 134-308 24-190 (652)
176 KOG4642 Chaperone-dependent E3 98.3 2.2E-06 4.7E-11 79.2 8.3 93 130-240 18-110 (284)
177 COG1729 Uncharacterized protei 98.3 1.3E-05 2.8E-10 76.3 13.9 104 159-297 144-253 (262)
178 PF04733 Coatomer_E: Coatomer 98.3 4.3E-06 9.3E-11 82.4 11.1 154 109-295 113-272 (290)
179 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.9E-05 4.1E-10 80.7 15.8 99 186-308 185-283 (395)
180 PF13512 TPR_18: Tetratricopep 98.3 2.3E-05 4.9E-10 67.8 13.2 116 155-295 9-135 (142)
181 COG4105 ComL DNA uptake lipopr 98.3 0.00014 3E-09 68.7 19.1 162 115-308 32-219 (254)
182 PLN03077 Protein ECB2; Provisi 98.2 0.00012 2.5E-09 83.7 21.8 83 271-357 536-637 (857)
183 PRK04841 transcriptional regul 98.2 0.0001 2.2E-09 84.5 20.4 191 109-346 502-765 (903)
184 KOG1308 Hsp70-interacting prot 98.2 5E-06 1.1E-10 80.8 7.7 88 134-246 126-213 (377)
185 PRK04841 transcriptional regul 98.2 0.0001 2.2E-09 84.6 19.9 149 132-308 462-627 (903)
186 COG1729 Uncharacterized protei 98.1 5.2E-05 1.1E-09 72.2 13.7 97 133-254 152-254 (262)
187 PF13512 TPR_18: Tetratricopep 98.1 5.2E-05 1.1E-09 65.6 12.4 101 133-251 21-135 (142)
188 PF04184 ST7: ST7 protein; In 98.1 0.00012 2.6E-09 74.8 16.0 194 134-368 180-401 (539)
189 cd01238 PH_Tec Tec pleckstrin 98.1 6.1E-06 1.3E-10 68.6 5.3 99 366-478 3-106 (106)
190 KOG0376 Serine-threonine phosp 98.1 5.9E-06 1.3E-10 83.8 6.2 106 182-308 16-121 (476)
191 KOG2796 Uncharacterized conser 98.1 0.00026 5.7E-09 66.6 16.4 137 132-303 187-333 (366)
192 PF13428 TPR_14: Tetratricopep 98.0 1.5E-05 3.3E-10 54.8 5.2 43 156-212 1-43 (44)
193 COG4700 Uncharacterized protei 98.0 0.00055 1.2E-08 61.4 16.0 109 131-265 98-209 (251)
194 KOG0376 Serine-threonine phosp 98.0 1.1E-05 2.5E-10 81.8 5.9 103 133-260 15-117 (476)
195 PF13428 TPR_14: Tetratricopep 98.0 1.6E-05 3.5E-10 54.7 4.9 44 249-302 1-44 (44)
196 KOG3785 Uncharacterized conser 98.0 0.0002 4.4E-09 69.9 14.0 36 273-308 165-200 (557)
197 PF13431 TPR_17: Tetratricopep 97.9 1.2E-05 2.5E-10 52.0 3.7 33 192-228 1-33 (34)
198 PF13431 TPR_17: Tetratricopep 97.9 8.7E-06 1.9E-10 52.6 2.9 29 237-265 1-29 (34)
199 KOG0545 Aryl-hydrocarbon recep 97.9 0.00021 4.5E-09 66.6 12.6 118 205-355 179-308 (329)
200 PF04184 ST7: ST7 protein; In 97.8 0.00068 1.5E-08 69.4 16.1 113 186-314 184-316 (539)
201 KOG0545 Aryl-hydrocarbon recep 97.8 0.00016 3.4E-09 67.4 10.4 104 157-295 179-300 (329)
202 KOG0551 Hsp90 co-chaperone CNS 97.8 0.00017 3.6E-09 70.0 9.9 100 158-292 83-186 (390)
203 KOG3081 Vesicle coat complex C 97.7 0.0025 5.4E-08 60.4 16.9 140 132-309 118-257 (299)
204 KOG4340 Uncharacterized conser 97.7 0.00061 1.3E-08 65.3 13.0 139 129-288 51-207 (459)
205 cd01244 PH_RasGAP_CG9209 RAS_G 97.7 5.1E-05 1.1E-09 61.8 5.1 79 382-477 19-97 (98)
206 KOG1586 Protein required for f 97.7 0.0042 9.1E-08 57.8 17.6 187 108-346 24-229 (288)
207 KOG3081 Vesicle coat complex C 97.7 0.003 6.5E-08 59.9 16.8 158 103-293 113-276 (299)
208 KOG2471 TPR repeat-containing 97.7 0.00038 8.2E-09 70.7 11.3 147 133-307 217-383 (696)
209 cd01236 PH_outspread Outspread 97.7 8.7E-05 1.9E-09 61.1 5.7 96 366-476 2-101 (104)
210 PF00515 TPR_1: Tetratricopept 97.7 8E-05 1.7E-09 47.9 4.4 34 156-203 1-34 (34)
211 KOG2796 Uncharacterized conser 97.7 0.00081 1.8E-08 63.4 12.4 157 157-363 178-337 (366)
212 KOG1941 Acetylcholine receptor 97.6 0.0018 4E-08 63.6 15.1 153 130-311 91-264 (518)
213 PF00515 TPR_1: Tetratricopept 97.6 8E-05 1.7E-09 47.9 4.1 34 249-292 1-34 (34)
214 PF07719 TPR_2: Tetratricopept 97.6 0.00016 3.5E-09 46.3 5.1 34 156-203 1-34 (34)
215 KOG1915 Cell cycle control pro 97.6 0.011 2.4E-07 60.2 19.7 183 111-348 335-543 (677)
216 PF07719 TPR_2: Tetratricopept 97.6 0.00017 3.7E-09 46.2 4.7 34 249-292 1-34 (34)
217 COG4105 ComL DNA uptake lipopr 97.5 0.0083 1.8E-07 56.9 17.8 111 155-292 33-149 (254)
218 PF03704 BTAD: Bacterial trans 97.5 0.0021 4.6E-08 56.4 13.2 75 156-248 62-136 (146)
219 PF13281 DUF4071: Domain of un 97.5 0.014 3E-07 59.0 19.8 192 132-359 151-355 (374)
220 KOG3617 WD40 and TPR repeat-co 97.4 0.0037 8.1E-08 67.2 15.0 148 111-288 813-996 (1416)
221 KOG2053 Mitochondrial inherita 97.4 0.005 1.1E-07 67.0 15.6 106 134-265 21-126 (932)
222 KOG0530 Protein farnesyltransf 97.4 0.0091 2E-07 56.5 15.3 183 110-346 38-221 (318)
223 PF12968 DUF3856: Domain of Un 97.3 0.0071 1.5E-07 50.2 12.5 91 184-288 23-129 (144)
224 PF05843 Suf: Suppressor of fo 97.3 0.0057 1.2E-07 60.1 14.1 125 135-294 14-142 (280)
225 PF13281 DUF4071: Domain of un 97.3 0.019 4E-07 58.1 17.5 174 108-301 151-347 (374)
226 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0048 1E-07 60.2 12.7 92 129-245 88-183 (390)
227 KOG1070 rRNA processing protei 97.3 0.029 6.2E-07 64.0 20.2 163 110-308 1470-1649(1710)
228 COG0790 FOG: TPR repeat, SEL1 97.2 0.014 3E-07 57.6 16.4 146 135-308 90-237 (292)
229 KOG2053 Mitochondrial inherita 97.2 0.0074 1.6E-07 65.7 14.9 102 185-308 24-125 (932)
230 KOG1915 Cell cycle control pro 97.2 0.03 6.4E-07 57.2 18.0 179 135-359 86-294 (677)
231 PF05843 Suf: Suppressor of fo 97.1 0.015 3.2E-07 57.2 14.8 138 158-349 3-144 (280)
232 KOG1308 Hsp70-interacting prot 97.1 0.00021 4.6E-09 69.7 1.5 85 186-291 130-214 (377)
233 KOG1941 Acetylcholine receptor 97.1 0.0029 6.4E-08 62.2 9.3 128 131-289 131-276 (518)
234 PF02259 FAT: FAT domain; Int 97.1 0.033 7.1E-07 56.3 17.7 170 152-344 142-341 (352)
235 COG3118 Thioredoxin domain-con 97.1 0.019 4.1E-07 55.5 14.6 137 131-307 143-286 (304)
236 COG3898 Uncharacterized membra 97.0 0.19 4.1E-06 50.4 21.3 91 186-290 170-294 (531)
237 cd01235 PH_SETbf Set binding f 97.0 0.0014 3.1E-08 53.6 5.6 82 381-478 12-100 (101)
238 PF03704 BTAD: Bacterial trans 97.0 0.024 5.1E-07 49.7 13.7 81 186-287 22-124 (146)
239 cd01266 PH_Gab Gab (Grb2-assoc 97.0 0.0017 3.7E-08 54.1 6.0 96 366-478 2-107 (108)
240 PF04781 DUF627: Protein of un 96.9 0.014 3E-07 48.2 10.6 100 131-244 5-107 (111)
241 KOG3617 WD40 and TPR repeat-co 96.9 0.046 1E-06 59.2 17.1 90 204-308 858-982 (1416)
242 PF04781 DUF627: Protein of un 96.9 0.02 4.3E-07 47.3 11.2 103 162-288 2-107 (111)
243 cd01257 PH_IRS Insulin recepto 96.9 0.0017 3.7E-08 53.2 5.1 53 422-476 47-99 (101)
244 PF13181 TPR_8: Tetratricopept 96.9 0.0018 3.9E-08 41.4 4.2 33 250-292 2-34 (34)
245 KOG2610 Uncharacterized conser 96.9 0.029 6.2E-07 55.0 14.0 112 132-268 113-228 (491)
246 cd01233 Unc104 Unc-104 pleckst 96.9 0.0013 2.8E-08 54.0 4.3 93 365-479 4-98 (100)
247 PF13181 TPR_8: Tetratricopept 96.9 0.002 4.2E-08 41.2 4.2 33 157-203 2-34 (34)
248 KOG3824 Huntingtin interacting 96.9 0.0032 6.9E-08 60.7 7.3 67 133-213 127-193 (472)
249 KOG1070 rRNA processing protei 96.9 0.067 1.5E-06 61.1 18.5 140 132-306 1540-1683(1710)
250 KOG2047 mRNA splicing factor [ 96.8 0.096 2.1E-06 55.5 18.1 167 132-344 397-582 (835)
251 KOG1550 Extracellular protein 96.7 0.042 9.2E-07 59.4 15.9 142 135-306 262-409 (552)
252 cd01251 PH_centaurin_alpha Cen 96.7 0.0033 7.1E-08 51.9 5.5 82 382-479 14-100 (103)
253 cd01264 PH_melted Melted pleck 96.7 0.0027 6E-08 51.8 4.8 84 380-478 15-100 (101)
254 KOG1585 Protein required for f 96.7 0.11 2.4E-06 48.8 15.7 123 133-284 42-175 (308)
255 PF10300 DUF3808: Protein of u 96.7 0.027 5.8E-07 59.6 13.3 124 135-286 246-374 (468)
256 PF10300 DUF3808: Protein of u 96.6 0.059 1.3E-06 57.0 15.7 153 135-309 201-356 (468)
257 KOG1586 Protein required for f 96.5 0.2 4.4E-06 46.9 16.3 112 136-290 28-145 (288)
258 KOG4507 Uncharacterized conser 96.5 0.0072 1.6E-07 62.9 7.5 98 186-304 623-721 (886)
259 PF02259 FAT: FAT domain; Int 96.5 0.07 1.5E-06 53.8 14.7 143 132-292 156-342 (352)
260 PRK10941 hypothetical protein; 96.5 0.026 5.6E-07 54.9 10.8 79 119-211 178-256 (269)
261 KOG1585 Protein required for f 96.4 0.14 3.1E-06 48.2 14.8 174 103-305 36-240 (308)
262 KOG0529 Protein geranylgeranyl 96.4 0.44 9.6E-06 48.2 19.3 185 138-346 45-229 (421)
263 KOG2610 Uncharacterized conser 96.4 0.051 1.1E-06 53.3 12.1 119 159-312 106-228 (491)
264 PF09986 DUF2225: Uncharacteri 96.4 0.053 1.2E-06 50.9 12.1 103 185-301 92-208 (214)
265 KOG1550 Extracellular protein 96.4 0.15 3.2E-06 55.3 17.1 164 137-343 227-395 (552)
266 cd01245 PH_RasGAP_CG5898 RAS G 96.4 0.0086 1.9E-07 48.7 5.7 51 425-476 45-96 (98)
267 PF08424 NRDE-2: NRDE-2, neces 96.3 0.81 1.8E-05 45.9 20.9 126 142-288 5-131 (321)
268 KOG2047 mRNA splicing factor [ 96.3 0.52 1.1E-05 50.2 19.4 140 134-308 359-526 (835)
269 KOG3824 Huntingtin interacting 96.3 0.015 3.2E-07 56.2 7.5 63 186-259 132-194 (472)
270 cd01260 PH_CNK Connector enhan 96.2 0.0066 1.4E-07 49.2 4.5 79 380-477 16-95 (96)
271 KOG2471 TPR repeat-containing 96.2 0.023 5E-07 58.1 9.1 103 186-308 222-350 (696)
272 KOG4507 Uncharacterized conser 96.2 0.027 5.8E-07 58.9 9.5 103 133-260 618-721 (886)
273 COG3914 Spy Predicted O-linked 96.2 0.083 1.8E-06 55.5 13.0 137 140-304 49-187 (620)
274 PF13174 TPR_6: Tetratricopept 96.2 0.011 2.3E-07 37.2 4.3 33 157-203 1-33 (33)
275 PF13176 TPR_7: Tetratricopept 96.1 0.011 2.3E-07 38.6 4.2 28 158-199 1-28 (36)
276 COG2976 Uncharacterized protei 96.1 0.27 5.9E-06 44.8 14.4 117 140-293 70-193 (207)
277 COG3898 Uncharacterized membra 96.1 1.8 3.9E-05 43.7 21.0 212 110-347 132-383 (531)
278 PF14561 TPR_20: Tetratricopep 96.1 0.084 1.8E-06 42.3 10.0 66 189-265 7-74 (90)
279 cd01247 PH_GPBP Goodpasture an 96.0 0.012 2.6E-07 47.3 5.1 79 380-477 11-90 (91)
280 PF13176 TPR_7: Tetratricopept 96.0 0.012 2.7E-07 38.2 4.1 29 251-289 1-29 (36)
281 KOG1310 WD40 repeat protein [G 95.9 0.027 5.8E-07 58.2 7.9 89 186-292 390-478 (758)
282 COG0790 FOG: TPR repeat, SEL1 95.9 1.5 3.2E-05 43.1 20.4 178 133-351 52-230 (292)
283 cd01265 PH_PARIS-1 PARIS-1 ple 95.9 0.015 3.3E-07 47.1 5.0 78 381-478 14-93 (95)
284 PF14561 TPR_20: Tetratricopep 95.8 0.097 2.1E-06 41.9 9.3 70 141-228 7-78 (90)
285 PF08424 NRDE-2: NRDE-2, neces 95.8 0.29 6.2E-06 49.2 14.8 131 136-291 45-186 (321)
286 PF13174 TPR_6: Tetratricopept 95.8 0.017 3.6E-07 36.3 3.9 33 250-292 1-33 (33)
287 smart00028 TPR Tetratricopepti 95.7 0.016 3.4E-07 35.2 3.5 33 250-292 2-34 (34)
288 smart00028 TPR Tetratricopepti 95.6 0.021 4.6E-07 34.5 3.9 33 157-203 2-34 (34)
289 COG3118 Thioredoxin domain-con 95.6 0.63 1.4E-05 45.2 15.4 114 157-310 135-253 (304)
290 cd01263 PH_anillin Anillin Ple 95.6 0.016 3.5E-07 49.1 4.1 95 366-476 4-120 (122)
291 PRK10941 hypothetical protein; 95.5 0.15 3.3E-06 49.5 11.3 75 206-301 183-257 (269)
292 cd01250 PH_centaurin Centaurin 95.5 0.027 5.8E-07 45.1 5.0 81 381-477 13-93 (94)
293 PF04910 Tcf25: Transcriptiona 95.4 1.1 2.3E-05 45.8 17.6 162 146-346 30-227 (360)
294 KOG2396 HAT (Half-A-TPR) repea 95.4 0.18 3.9E-06 52.1 11.6 89 140-253 89-178 (568)
295 KOG0530 Protein farnesyltransf 95.4 0.36 7.8E-06 46.0 12.7 144 135-307 91-236 (318)
296 COG3914 Spy Predicted O-linked 95.4 0.29 6.3E-06 51.6 13.2 127 186-346 47-176 (620)
297 PF13374 TPR_10: Tetratricopep 95.3 0.045 9.7E-07 36.3 5.0 36 204-243 2-37 (42)
298 PF00169 PH: PH domain; Inter 95.2 0.044 9.6E-07 44.1 5.5 85 380-478 13-102 (104)
299 KOG1310 WD40 repeat protein [G 95.1 0.1 2.2E-06 54.1 8.9 91 135-247 387-477 (758)
300 KOG2396 HAT (Half-A-TPR) repea 95.1 0.22 4.8E-06 51.4 11.2 95 186-300 87-181 (568)
301 PF14853 Fis1_TPR_C: Fis1 C-te 95.1 0.1 2.3E-06 37.2 6.4 43 205-258 2-44 (53)
302 PF12968 DUF3856: Domain of Un 94.9 0.79 1.7E-05 38.4 11.9 90 132-239 19-131 (144)
303 KOG0529 Protein geranylgeranyl 94.9 0.5 1.1E-05 47.8 12.9 147 135-301 88-237 (421)
304 PF09613 HrpB1_HrpK: Bacterial 94.8 2.1 4.6E-05 38.0 15.2 84 157-265 11-94 (160)
305 PF04910 Tcf25: Transcriptiona 94.8 1.2 2.6E-05 45.5 15.7 94 196-303 32-148 (360)
306 PF14853 Fis1_TPR_C: Fis1 C-te 94.7 0.16 3.5E-06 36.2 6.5 43 157-213 2-44 (53)
307 PF09613 HrpB1_HrpK: Bacterial 94.6 1.8 3.8E-05 38.5 14.2 82 206-308 12-93 (160)
308 cd01246 PH_oxysterol_bp Oxyste 94.5 0.063 1.4E-06 42.6 4.7 77 382-477 13-90 (91)
309 smart00233 PH Pleckstrin homol 94.1 0.11 2.3E-06 41.2 5.2 86 380-479 14-101 (102)
310 PRK13184 pknD serine/threonine 94.1 1.2 2.7E-05 50.6 15.2 112 181-307 486-600 (932)
311 cd01252 PH_cytohesin Cytohesin 94.0 0.084 1.8E-06 45.1 4.7 78 382-478 14-112 (125)
312 KOG2300 Uncharacterized conser 94.0 2.3 4.9E-05 44.1 15.3 142 131-310 332-502 (629)
313 COG4976 Predicted methyltransf 94.0 0.089 1.9E-06 49.0 5.0 58 134-205 7-64 (287)
314 COG4976 Predicted methyltransf 94.0 0.086 1.9E-06 49.1 4.8 55 185-250 10-64 (287)
315 COG2912 Uncharacterized conser 93.9 0.29 6.3E-06 47.1 8.5 79 121-213 180-258 (269)
316 PF09986 DUF2225: Uncharacteri 93.8 0.5 1.1E-05 44.4 9.7 102 221-344 90-197 (214)
317 KOG3364 Membrane protein invol 93.7 1.8 3.8E-05 37.2 11.8 83 155-259 31-115 (149)
318 cd02682 MIT_AAA_Arch MIT: doma 93.7 0.47 1E-05 36.4 7.6 44 221-264 19-62 (75)
319 COG4649 Uncharacterized protei 93.6 3.8 8.3E-05 36.9 14.1 136 135-306 71-213 (221)
320 KOG3616 Selective LIM binding 93.6 2.1 4.5E-05 46.4 14.6 74 206-283 826-919 (1636)
321 KOG0985 Vesicle coat protein c 93.6 3 6.4E-05 47.0 16.1 39 269-307 1289-1327(1666)
322 PF13374 TPR_10: Tetratricopep 93.5 0.15 3.2E-06 33.7 4.3 31 249-289 2-32 (42)
323 PF08631 SPO22: Meiosis protei 93.4 8.5 0.00018 37.7 18.4 124 133-288 4-150 (278)
324 cd01241 PH_Akt Akt pleckstrin 93.1 0.12 2.6E-06 42.5 3.9 91 365-478 3-101 (102)
325 PF15015 NYD-SP12_N: Spermatog 92.9 2 4.3E-05 43.8 12.6 85 129-231 183-285 (569)
326 KOG1258 mRNA processing protei 92.8 8.8 0.00019 40.9 17.8 165 134-352 309-481 (577)
327 KOG3364 Membrane protein invol 92.8 2.2 4.8E-05 36.6 11.0 83 247-355 30-114 (149)
328 COG2976 Uncharacterized protei 92.5 1.2 2.6E-05 40.7 9.7 91 131-248 98-192 (207)
329 PF10602 RPN7: 26S proteasome 92.5 2 4.2E-05 39.1 11.4 99 156-287 36-141 (177)
330 KOG1914 mRNA cleavage and poly 92.4 12 0.00027 39.5 17.9 157 144-311 267-453 (656)
331 cd01239 PH_PKD Protein kinase 92.3 0.17 3.7E-06 41.8 3.7 78 383-477 15-116 (117)
332 PF10373 EST1_DNA_bind: Est1 D 92.1 0.43 9.3E-06 46.4 7.1 62 234-305 1-62 (278)
333 COG3629 DnrI DNA-binding trans 91.9 1.9 4.2E-05 42.0 11.1 75 155-247 152-226 (280)
334 PF08631 SPO22: Meiosis protei 91.6 7.6 0.00017 38.0 15.3 113 184-307 7-135 (278)
335 cd02683 MIT_1 MIT: domain cont 91.5 1.3 2.9E-05 34.2 7.8 46 186-250 3-48 (77)
336 PRK15180 Vi polysaccharide bio 91.3 0.88 1.9E-05 46.9 8.2 125 135-294 302-426 (831)
337 COG5191 Uncharacterized conser 91.2 0.34 7.3E-06 47.2 5.0 90 190-300 93-183 (435)
338 KOG2422 Uncharacterized conser 90.9 9.6 0.00021 40.5 15.4 114 181-308 249-392 (665)
339 KOG1839 Uncharacterized protei 90.8 1.1 2.3E-05 51.7 9.1 109 186-308 948-1072(1236)
340 KOG2300 Uncharacterized conser 90.6 7 0.00015 40.7 13.8 124 135-297 380-526 (629)
341 PF10373 EST1_DNA_bind: Est1 D 90.5 0.94 2E-05 44.0 7.7 62 189-261 1-62 (278)
342 KOG4814 Uncharacterized conser 90.5 4.7 0.0001 43.3 12.7 102 114-233 346-453 (872)
343 cd00821 PH Pleckstrin homology 90.4 0.44 9.6E-06 37.0 4.4 81 382-477 14-95 (96)
344 COG5191 Uncharacterized conser 90.4 0.55 1.2E-05 45.8 5.5 86 144-254 95-181 (435)
345 cd01253 PH_beta_spectrin Beta- 90.1 0.6 1.3E-05 38.3 5.0 84 380-477 19-103 (104)
346 cd02678 MIT_VPS4 MIT: domain c 89.9 2.4 5.3E-05 32.5 7.9 44 186-248 3-46 (75)
347 KOG2041 WD40 repeat protein [G 89.8 7.3 0.00016 42.3 13.5 104 110-231 746-875 (1189)
348 KOG1914 mRNA cleavage and poly 89.7 27 0.00059 37.0 17.3 69 146-233 10-78 (656)
349 TIGR02561 HrpB1_HrpK type III 89.6 10 0.00022 33.3 12.2 69 186-265 26-94 (153)
350 PF12862 Apc5: Anaphase-promot 89.5 1.6 3.5E-05 35.0 7.0 59 221-289 11-71 (94)
351 TIGR02561 HrpB1_HrpK type III 89.4 8.6 0.00019 33.7 11.6 71 221-308 23-93 (153)
352 COG3947 Response regulator con 89.3 1.4 3E-05 42.8 7.3 72 111-196 268-339 (361)
353 KOG3616 Selective LIM binding 89.2 12 0.00026 40.9 14.6 64 249-312 824-901 (1636)
354 COG2912 Uncharacterized conser 89.1 2.9 6.2E-05 40.4 9.4 63 221-300 194-256 (269)
355 PF07079 DUF1347: Protein of u 89.1 16 0.00034 37.9 14.8 118 131-284 388-520 (549)
356 KOG3807 Predicted membrane pro 89.0 26 0.00056 34.9 16.3 107 186-308 200-326 (556)
357 KOG1258 mRNA processing protei 89.0 15 0.00033 39.2 15.3 162 113-309 246-416 (577)
358 cd02681 MIT_calpain7_1 MIT: do 88.9 3.4 7.3E-05 31.9 7.9 40 187-245 4-43 (76)
359 cd01254 PH_PLD Phospholipase D 88.8 0.72 1.6E-05 39.1 4.7 88 381-477 30-120 (121)
360 KOG4814 Uncharacterized conser 88.8 4.8 0.0001 43.2 11.4 82 185-287 369-456 (872)
361 PF04212 MIT: MIT (microtubule 88.7 1 2.3E-05 33.8 5.0 27 221-247 18-44 (69)
362 KOG1839 Uncharacterized protei 88.6 4.2 9.1E-05 47.1 11.7 123 139-289 955-1087(1236)
363 COG2909 MalT ATP-dependent tra 88.3 33 0.00073 38.5 17.8 150 132-311 468-636 (894)
364 PF10516 SHNi-TPR: SHNi-TPR; 88.1 1.2 2.5E-05 29.4 4.2 34 205-242 2-35 (38)
365 COG4455 ImpE Protein of avirul 88.1 12 0.00026 35.1 12.2 176 276-479 18-228 (273)
366 PF07720 TPR_3: Tetratricopept 87.8 1.9 4.1E-05 28.0 5.0 34 156-203 1-36 (36)
367 smart00745 MIT Microtubule Int 87.8 4.1 8.8E-05 31.3 8.0 44 186-248 5-48 (77)
368 cd01237 Unc112 Unc-112 pleckst 87.3 1.1 2.4E-05 36.8 4.6 80 382-478 18-102 (106)
369 PF15413 PH_11: Pleckstrin hom 87.3 0.75 1.6E-05 38.4 3.8 32 445-476 79-110 (112)
370 KOG3807 Predicted membrane pro 87.1 34 0.00074 34.1 17.7 193 134-368 196-417 (556)
371 PF12862 Apc5: Anaphase-promot 86.9 4.4 9.6E-05 32.5 8.0 51 186-240 14-73 (94)
372 cd02684 MIT_2 MIT: domain cont 86.3 2.1 4.5E-05 32.9 5.5 43 186-247 3-45 (75)
373 PF15015 NYD-SP12_N: Spermatog 85.4 9.6 0.00021 39.0 10.9 79 186-285 192-288 (569)
374 PF10602 RPN7: 26S proteasome 85.3 14 0.0003 33.5 11.3 86 129-232 43-137 (177)
375 KOG2422 Uncharacterized conser 85.3 33 0.00072 36.7 15.0 112 136-262 252-390 (665)
376 cd02677 MIT_SNX15 MIT: domain 85.1 8 0.00017 29.7 8.2 43 186-247 3-45 (75)
377 cd00900 PH-like Pleckstrin hom 85.0 1.2 2.5E-05 34.9 3.8 80 381-477 16-98 (99)
378 PF10516 SHNi-TPR: SHNi-TPR; 85.0 1.6 3.5E-05 28.7 3.7 30 157-200 2-31 (38)
379 COG4941 Predicted RNA polymera 84.8 43 0.00093 33.5 14.7 158 134-308 208-380 (415)
380 PF11207 DUF2989: Protein of u 84.8 33 0.00071 31.8 13.3 51 247-308 139-193 (203)
381 PF07721 TPR_4: Tetratricopept 84.7 1 2.2E-05 26.7 2.4 25 250-284 2-26 (26)
382 KOG0546 HSP90 co-chaperone CPR 84.2 1.2 2.7E-05 44.3 4.0 109 221-359 235-356 (372)
383 cd02656 MIT MIT: domain contai 84.0 4.8 0.0001 30.7 6.6 27 221-247 19-45 (75)
384 PTZ00267 NIMA-related protein 83.8 1 2.2E-05 47.8 3.8 55 425-479 420-476 (478)
385 PF07720 TPR_3: Tetratricopept 83.6 3.3 7.2E-05 26.9 4.6 33 250-292 2-36 (36)
386 PF10345 Cohesin_load: Cohesin 83.5 76 0.0016 34.9 21.5 127 136-295 35-177 (608)
387 cd01230 PH_EFA6 EFA6 Pleckstri 83.2 2.2 4.8E-05 35.9 4.7 38 445-482 76-114 (117)
388 PF13226 DUF4034: Domain of un 83.1 15 0.00033 35.8 11.1 78 188-265 61-149 (277)
389 COG3629 DnrI DNA-binding trans 82.8 7.7 0.00017 37.9 8.9 64 204-288 153-216 (280)
390 PF07721 TPR_4: Tetratricopept 82.6 1.6 3.5E-05 25.8 2.7 25 157-195 2-26 (26)
391 cd02679 MIT_spastin MIT: domai 82.5 7.9 0.00017 30.1 7.1 43 185-246 4-46 (79)
392 PF15410 PH_9: Pleckstrin homo 82.3 2.3 5E-05 35.9 4.6 95 380-478 22-117 (119)
393 PRK13184 pknD serine/threonine 82.2 21 0.00046 41.0 13.4 108 130-256 483-593 (932)
394 PF07079 DUF1347: Protein of u 81.4 73 0.0016 33.3 18.7 65 272-359 475-543 (549)
395 KOG4014 Uncharacterized conser 80.5 14 0.00031 33.6 8.9 152 136-308 49-214 (248)
396 KOG1464 COP9 signalosome, subu 79.5 34 0.00074 33.1 11.6 59 185-247 42-104 (440)
397 PF11207 DUF2989: Protein of u 78.8 9.5 0.00021 35.2 7.6 72 138-228 122-198 (203)
398 COG5107 RNA14 Pre-mRNA 3'-end 78.5 40 0.00086 35.1 12.4 78 144-242 290-367 (660)
399 COG1747 Uncharacterized N-term 78.2 98 0.0021 32.9 15.8 193 138-351 82-298 (711)
400 PF10579 Rapsyn_N: Rapsyn N-te 78.1 14 0.00031 28.6 7.1 53 133-199 17-72 (80)
401 PF15409 PH_8: Pleckstrin homo 78.1 3.6 7.9E-05 32.7 4.1 77 380-478 10-88 (89)
402 KOG0546 HSP90 co-chaperone CPR 77.4 3.1 6.8E-05 41.5 4.3 101 186-307 238-357 (372)
403 KOG0890 Protein kinase of the 77.2 80 0.0017 39.5 16.2 138 135-292 1683-1837(2382)
404 KOG0128 RNA-binding protein SA 76.9 34 0.00073 38.1 12.1 127 136-288 93-219 (881)
405 smart00386 HAT HAT (Half-A-TPR 76.9 7 0.00015 23.6 4.5 30 136-165 1-30 (33)
406 cd02680 MIT_calpain7_2 MIT: do 76.6 8.1 0.00018 29.7 5.5 44 186-250 3-46 (75)
407 KOG3783 Uncharacterized conser 75.1 1.2E+02 0.0026 32.3 17.1 79 252-358 452-544 (546)
408 COG3947 Response regulator con 75.1 23 0.0005 34.7 9.3 70 159-246 282-351 (361)
409 cd01231 PH_Lnk LNK-family Plec 74.6 5.2 0.00011 32.3 4.1 55 422-476 49-105 (107)
410 COG5536 BET4 Protein prenyltra 74.5 21 0.00045 34.7 8.7 146 137-305 89-239 (328)
411 PF04190 DUF410: Protein of un 73.9 57 0.0012 31.6 12.1 23 246-268 87-109 (260)
412 smart00386 HAT HAT (Half-A-TPR 73.4 8.4 0.00018 23.2 4.2 29 185-213 2-30 (33)
413 cd01219 PH_FGD FGD (faciogenit 73.3 7.2 0.00016 31.7 4.9 52 425-479 48-99 (101)
414 PRK15180 Vi polysaccharide bio 73.2 26 0.00057 36.5 9.6 72 183-265 302-373 (831)
415 KOG4014 Uncharacterized conser 72.8 77 0.0017 29.0 12.5 131 135-288 86-233 (248)
416 KOG0890 Protein kinase of the 71.7 66 0.0014 40.2 13.7 132 154-307 1668-1803(2382)
417 PF10579 Rapsyn_N: Rapsyn N-te 71.5 30 0.00065 26.9 7.4 51 160-228 10-63 (80)
418 PF13226 DUF4034: Domain of un 71.5 77 0.0017 31.0 12.2 73 236-308 64-148 (277)
419 PF04190 DUF410: Protein of un 71.4 1E+02 0.0022 29.8 21.1 153 111-288 3-170 (260)
420 smart00299 CLH Clathrin heavy 70.7 66 0.0014 27.4 10.9 108 186-304 23-136 (140)
421 COG2909 MalT ATP-dependent tra 69.5 2E+02 0.0044 32.6 16.3 113 132-265 425-553 (894)
422 PF04053 Coatomer_WDAD: Coatom 69.3 1.1E+02 0.0024 32.1 13.8 61 201-265 344-405 (443)
423 COG4941 Predicted RNA polymera 69.2 1.3E+02 0.0028 30.2 13.5 136 134-301 268-407 (415)
424 cd01258 PH_syntrophin Syntroph 69.1 9.9 0.00021 31.4 4.7 44 433-476 61-106 (108)
425 cd01259 PH_Apbb1ip Apbb1ip (Am 68.9 7.5 0.00016 32.2 3.9 87 380-478 12-107 (114)
426 KOG3640 Actin binding protein 68.6 6.9 0.00015 43.7 4.7 111 366-484 993-1111(1116)
427 cd01220 PH_CDEP Chondrocyte-de 68.0 16 0.00034 29.8 5.7 53 424-479 44-97 (99)
428 smart00299 CLH Clathrin heavy 67.5 76 0.0016 27.0 10.4 105 136-260 21-136 (140)
429 PF12753 Nro1: Nuclear pore co 67.3 20 0.00042 36.6 7.3 70 227-298 330-402 (404)
430 KOG3783 Uncharacterized conser 66.4 33 0.00071 36.4 8.9 71 207-291 452-523 (546)
431 KOG0686 COP9 signalosome, subu 65.7 51 0.0011 33.8 9.7 99 157-286 151-256 (466)
432 cd02680 MIT_calpain7_2 MIT: do 65.5 11 0.00025 28.9 4.1 34 114-152 3-36 (75)
433 PF12739 TRAPPC-Trs85: ER-Golg 65.3 1.4E+02 0.0031 31.0 13.7 117 158-303 210-351 (414)
434 PF04212 MIT: MIT (microtubule 63.9 13 0.00028 27.8 4.2 33 114-151 2-34 (69)
435 PF10345 Cohesin_load: Cohesin 63.5 1.1E+02 0.0023 33.7 13.0 87 186-291 37-131 (608)
436 KOG2059 Ras GTPase-activating 63.4 7.2 0.00016 42.2 3.5 97 366-479 568-664 (800)
437 PF10255 Paf67: RNA polymerase 63.1 27 0.00058 36.1 7.5 67 158-242 124-198 (404)
438 KOG0276 Vesicle coat complex C 62.5 95 0.0021 33.6 11.3 71 186-265 653-724 (794)
439 COG5536 BET4 Protein prenyltra 62.5 1.3E+02 0.0029 29.3 11.4 171 139-346 49-227 (328)
440 KOG4236 Serine/threonine prote 62.0 5.9 0.00013 41.8 2.5 56 423-479 452-523 (888)
441 PF10255 Paf67: RNA polymerase 61.3 44 0.00095 34.6 8.7 61 210-287 128-192 (404)
442 KOG0985 Vesicle coat protein c 60.5 1.1E+02 0.0025 35.2 11.9 48 202-265 1102-1149(1666)
443 KOG1920 IkappaB kinase complex 60.2 2.2E+02 0.0048 33.4 14.4 67 219-285 963-1039(1265)
444 KOG0686 COP9 signalosome, subu 60.2 91 0.002 32.1 10.4 53 205-265 151-203 (466)
445 PHA02537 M terminase endonucle 59.2 74 0.0016 30.2 9.2 97 135-248 96-211 (230)
446 COG4455 ImpE Protein of avirul 58.2 1.7E+02 0.0037 27.7 11.8 59 132-204 11-69 (273)
447 PF09670 Cas_Cas02710: CRISPR- 57.8 1.1E+02 0.0024 31.5 11.0 54 132-199 141-198 (379)
448 COG4649 Uncharacterized protei 55.8 1.6E+02 0.0035 26.8 10.6 103 132-261 104-212 (221)
449 cd02681 MIT_calpain7_1 MIT: do 55.5 20 0.00043 27.6 3.9 31 116-151 5-35 (76)
450 KOG1538 Uncharacterized conser 54.7 61 0.0013 35.3 8.5 37 249-285 804-843 (1081)
451 cd02679 MIT_spastin MIT: domai 54.6 23 0.0005 27.5 4.2 35 112-151 3-37 (79)
452 KOG4279 Serine/threonine prote 54.5 92 0.002 34.6 9.8 154 134-305 255-412 (1226)
453 TIGR03504 FimV_Cterm FimV C-te 54.4 21 0.00047 24.2 3.5 26 252-287 2-27 (44)
454 TIGR03504 FimV_Cterm FimV C-te 54.3 23 0.0005 24.1 3.6 26 159-198 2-27 (44)
455 PTZ00283 serine/threonine prot 54.1 8.1 0.00018 41.3 2.2 57 423-479 430-489 (496)
456 cd01243 PH_MRCK MRCK (myotonic 53.5 38 0.00082 28.5 5.5 101 366-481 5-121 (122)
457 KOG0739 AAA+-type ATPase [Post 53.4 73 0.0016 31.5 8.1 47 186-251 7-53 (439)
458 PF08626 TRAPPC9-Trs120: Trans 53.1 2.9E+02 0.0063 33.2 14.9 128 157-308 243-460 (1185)
459 KOG0276 Vesicle coat complex C 52.9 1.5E+02 0.0032 32.2 10.8 94 185-308 622-723 (794)
460 KOG1464 COP9 signalosome, subu 52.6 2.3E+02 0.005 27.6 14.5 50 136-199 41-94 (440)
461 KOG2041 WD40 repeat protein [G 52.3 1E+02 0.0022 34.0 9.6 107 135-268 747-871 (1189)
462 KOG4151 Myosin assembly protei 52.2 53 0.0012 36.4 7.8 114 117-253 46-165 (748)
463 PF14863 Alkyl_sulf_dimr: Alky 50.5 63 0.0014 28.1 6.7 52 203-265 69-120 (141)
464 PF11846 DUF3366: Domain of un 50.3 65 0.0014 29.4 7.3 51 184-246 125-175 (193)
465 PF14863 Alkyl_sulf_dimr: Alky 50.0 57 0.0012 28.4 6.4 49 154-216 68-116 (141)
466 PF12814 Mcp5_PH: Meiotic cell 49.6 41 0.0009 28.4 5.4 55 425-479 62-121 (123)
467 cd02684 MIT_2 MIT: domain cont 49.6 30 0.00065 26.5 4.1 33 114-151 3-35 (75)
468 PF12739 TRAPPC-Trs85: ER-Golg 49.4 3.2E+02 0.007 28.3 16.6 95 132-231 218-323 (414)
469 PF11846 DUF3366: Domain of un 49.3 64 0.0014 29.4 7.1 52 136-202 125-176 (193)
470 PF12309 KBP_C: KIF-1 binding 47.6 3.3E+02 0.0071 27.9 12.6 89 205-294 223-344 (371)
471 KOG0128 RNA-binding protein SA 47.1 3.8E+02 0.0083 30.3 13.2 104 186-308 95-198 (881)
472 KOG4279 Serine/threonine prote 46.5 90 0.002 34.6 8.3 80 183-265 256-336 (1226)
473 PF12854 PPR_1: PPR repeat 46.5 39 0.00084 21.2 3.6 27 248-284 6-32 (34)
474 KOG0889 Histone acetyltransfer 46.5 88 0.0019 40.7 9.2 91 156-264 2812-2902(3550)
475 PF03097 BRO1: BRO1-like domai 46.1 1.8E+02 0.0038 29.7 10.5 39 156-199 107-145 (377)
476 KOG4151 Myosin assembly protei 45.8 55 0.0012 36.3 6.7 102 163-297 60-165 (748)
477 cd02678 MIT_VPS4 MIT: domain c 45.6 36 0.00079 25.9 4.0 33 114-151 3-35 (75)
478 PHA02537 M terminase endonucle 44.8 54 0.0012 31.1 5.8 99 182-292 95-211 (230)
479 PF05053 Menin: Menin; InterP 42.4 89 0.0019 33.5 7.4 44 189-236 298-346 (618)
480 smart00745 MIT Microtubule Int 42.4 43 0.00094 25.4 4.1 34 113-151 4-37 (77)
481 PF11817 Foie-gras_1: Foie gra 42.1 2E+02 0.0043 27.5 9.5 73 225-308 155-233 (247)
482 KOG0930 Guanine nucleotide exc 41.9 44 0.00095 32.3 4.7 101 365-487 262-389 (395)
483 PF12854 PPR_1: PPR repeat 41.8 61 0.0013 20.3 4.0 26 203-232 6-31 (34)
484 PF09797 NatB_MDM20: N-acetylt 41.2 72 0.0016 32.5 6.7 103 136-256 197-300 (365)
485 PF09670 Cas_Cas02710: CRISPR- 41.2 4.1E+02 0.009 27.2 13.5 61 159-235 134-196 (379)
486 COG5107 RNA14 Pre-mRNA 3'-end 40.2 4.7E+02 0.01 27.6 13.1 131 144-293 30-195 (660)
487 KOG2581 26S proteasome regulat 39.9 4.5E+02 0.0097 27.3 12.0 124 186-346 142-281 (493)
488 cd02682 MIT_AAA_Arch MIT: doma 39.8 1.3E+02 0.0029 23.1 6.2 36 259-297 16-51 (75)
489 KOG0932 Guanine nucleotide exc 39.5 40 0.00086 35.9 4.3 46 437-483 575-621 (774)
490 PF14593 PH_3: PH domain; PDB: 39.1 61 0.0013 26.6 4.6 53 424-483 51-103 (104)
491 KOG3751 Growth factor receptor 38.5 34 0.00073 36.0 3.6 96 366-478 320-423 (622)
492 PF09205 DUF1955: Domain of un 38.4 2E+02 0.0044 25.0 7.6 78 135-235 69-147 (161)
493 PF11817 Foie-gras_1: Foie gra 38.0 2.7E+02 0.0058 26.6 9.7 75 186-265 154-234 (247)
494 cd02656 MIT MIT: domain contai 37.8 57 0.0012 24.7 4.1 32 115-151 4-35 (75)
495 PF00244 14-3-3: 14-3-3 protei 37.5 3.7E+02 0.0079 25.5 15.2 135 159-307 4-182 (236)
496 PRK15490 Vi polysaccharide bio 37.1 2.3E+02 0.0051 30.8 9.8 74 135-228 21-94 (578)
497 KOG2581 26S proteasome regulat 36.9 2.7E+02 0.0059 28.8 9.5 124 135-293 139-281 (493)
498 cd09241 BRO1_ScRim20-like Prot 36.5 3E+02 0.0065 27.9 10.3 37 157-198 107-143 (355)
499 PF09205 DUF1955: Domain of un 36.1 2.8E+02 0.0061 24.1 8.1 43 236-288 107-149 (161)
500 PF04053 Coatomer_WDAD: Coatom 35.9 5.4E+02 0.012 27.1 14.7 30 246-285 344-373 (443)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=4.8e-24 Score=215.37 Aligned_cols=183 Identities=25% Similarity=0.339 Sum_probs=107.7
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
|+.+|+++-||..|+++|++.|+.++++.|+|+.+...|+ ..+|+.+|.+||.++|+++++.+|||
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~--------------V~ea~~cYnkaL~l~p~hadam~NLg 361 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS--------------VTEAVDCYNKALRLCPNHADAMNNLG 361 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc--------------hHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 3445555555555555555555555555555555555555 55555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
++|.. +|.+++|. ..|.++++..|..+.+++|||.+|.++|++ ++|+.+|+.||+++|.
T Consensus 362 ni~~E----~~~~e~A~-------~ly~~al~v~p~~aaa~nNLa~i~kqqgnl----------~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 362 NIYRE----QGKIEEAT-------RLYLKALEVFPEFAAAHNNLASIYKQQGNL----------DDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHHH----hccchHHH-------HHHHHHHhhChhhhhhhhhHHHHHHhcccH----------HHHHHHHHHHHhcCch
Confidence 55555 55555555 444444444444444444444444444444 7777777777777777
Q ss_pred CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcH--H-------------HHHHHHHHHHHHHhcCCcHHHHH
Q 010976 292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN--E-------------LYSQSAIYIAAAHALKPSYSVYS 349 (496)
Q Consensus 292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~--~-------------~~~~A~~~~~~a~~l~p~~~~y~ 349 (496)
++.++.|+|.+|..+|+...+......+..++|. + ...+|+..|+.+++++|+.+...
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 7777777777777777655544433333333332 1 14678888888888888888433
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=4.3e-23 Score=208.50 Aligned_cols=218 Identities=19% Similarity=0.222 Sum_probs=178.3
Q ss_pred CChhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Q 010976 105 NTPHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS 174 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 174 (496)
+..+...|..+-|++.|++++... +.++...|+..+|..+|.++|.++|+++++++|||++|.++|.
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~--- 369 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK--- 369 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc---
Confidence 334456789999999999999877 2334456999999999999999999999999999999999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976 175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 254 (496)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~ 254 (496)
+++|...|.++++..|+.+.++.|||.+|.+ +|++++|+ .+|+++|.+.|..++++.|
T Consensus 370 -----------~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq----qgnl~~Ai-------~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 370 -----------IEEATRLYLKALEVFPEFAAAHNNLASIYKQ----QGNLDDAI-------MCYKEALRIKPTFADALSN 427 (966)
T ss_pred -----------chHHHHHHHHHHhhChhhhhhhhhHHHHHHh----cccHHHHH-------HHHHHHHhcCchHHHHHHh
Confidence 9999999999999999999999999999999 99999999 8999999999999999999
Q ss_pred HHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcH--HHHHHHH
Q 010976 255 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN--ELYSQSA 332 (496)
Q Consensus 255 lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~A~ 332 (496)
+|.+|-.+|+. ..|+++|.+||.++|.+++++.|||.+|...|+...++........+.|+ +.|...+
T Consensus 428 mGnt~ke~g~v----------~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 428 MGNTYKEMGDV----------SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred cchHHHHhhhH----------HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 99999999999 99999999999999999999999999999999887766544333333332 2344444
Q ss_pred HHHHHHHhcCCcHHHHHHHHHhhhc
Q 010976 333 IYIAAAHALKPSYSVYSSALRLVRS 357 (496)
Q Consensus 333 ~~~~~a~~l~p~~~~y~~al~~~~~ 357 (496)
.++.-.-.-..-+..+.+...++++
T Consensus 498 h~lq~vcdw~D~d~~~~kl~sivrd 522 (966)
T KOG4626|consen 498 HCLQIVCDWTDYDKRMKKLVSIVRD 522 (966)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHH
Confidence 4433322222222344444444444
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=3.8e-18 Score=186.30 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=112.4
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
+|++++|+..|+++++++|+++.+++.+|.+++.+|+ +++|+.+|++++.++|++..+++++|.++
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--------------FAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444 55555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHH------------------------
Q 010976 215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------ 270 (496)
Q Consensus 215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~------------------------ 270 (496)
.. +|++++|+ ..|++++..+|+++.+++++|.++..+|++++|..
T Consensus 444 ~~----~g~~~eA~-------~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 444 YK----EGSIASSM-------ATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HH----CCCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 55 55555555 78888888888888888888888888888877611
Q ss_pred -------hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976 271 -------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 343 (496)
Q Consensus 271 -------~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 343 (496)
..|++++|+..|+++++++|++..++..+|.++..+|+ +.+|+.+|++++++.+
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~-------------------~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD-------------------VDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC-------------------HHHHHHHHHHHHHHhc
Confidence 14778888888888888888888888888888888887 7888888888888877
Q ss_pred cHH
Q 010976 344 SYS 346 (496)
Q Consensus 344 ~~~ 346 (496)
...
T Consensus 574 ~~~ 576 (615)
T TIGR00990 574 TEG 576 (615)
T ss_pred cHH
Confidence 544
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=5e-18 Score=185.31 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=169.0
Q ss_pred hcHHHHHHHHHHhhccc-------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976 112 EQNNAAMELINSVTGVD-------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 178 (496)
Q Consensus 112 ~~~~~A~~~~~~~l~~~-------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 178 (496)
+.+++|+..+.+++... +..+..+|++++|+..|++++.++|++..+|..+|.++..+|+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~------- 380 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD------- 380 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-------
Confidence 57889999998888642 2345567999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976 179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258 (496)
Q Consensus 179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 258 (496)
+++|+..|+++++++|+++.+++++|.++.. +|++++|+ .+|++++.++|++..+++++|.+
T Consensus 381 -------~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 381 -------PDKAEEDFDKALKLNSEDPDIYYHRAQLHFI----KGEFAQAG-------KDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred -------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 89999999999999999999999
Q ss_pred HHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHH
Q 010976 259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAA 338 (496)
Q Consensus 259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a 338 (496)
+..+|++ ++|+..|+++++..|+++.+++++|.++..+|+ +.+|..+|+++
T Consensus 443 ~~~~g~~----------~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~A 493 (615)
T TIGR00990 443 QYKEGSI----------ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-------------------FDEAIEKFDTA 493 (615)
T ss_pred HHHCCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-------------------HHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999998 89999999999
Q ss_pred HhcCCcH
Q 010976 339 HALKPSY 345 (496)
Q Consensus 339 ~~l~p~~ 345 (496)
+.++|..
T Consensus 494 l~l~p~~ 500 (615)
T TIGR00990 494 IELEKET 500 (615)
T ss_pred HhcCCcc
Confidence 9999874
No 5
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.8e-18 Score=176.35 Aligned_cols=207 Identities=17% Similarity=0.184 Sum_probs=178.9
Q ss_pred HHHHHhcCCcccccccCCCChhhhhhcHHHHHHHHHHhhccch----------hhhHhhccHHHHHHHHHHHHHhCCCCH
Q 010976 87 LTELKSEGEDSVTDASQGNTPHQLAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPEDY 156 (496)
Q Consensus 87 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~----------~~~~~~g~~~~Ai~~~~~al~~~P~~~ 156 (496)
.++|...........-..+..+...++++.|+..+++++.++. .......+++.|..+|+.||..+|++.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 3444444444444455667777788999999999999999883 223446789999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 236 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~ 236 (496)
.|||.+|.+|.++++ ++.|.-+|++|+.+||.+......+|.++.. +|+.++|+ .
T Consensus 490 nAwYGlG~vy~Kqek--------------~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL-------~ 544 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEK--------------LEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKAL-------Q 544 (638)
T ss_pred HHHHhhhhheeccch--------------hhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHH-------H
Confidence 999999999999999 9999999999999999999999999999999 99999998 8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCC
Q 010976 237 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT 316 (496)
Q Consensus 237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~ 316 (496)
.|++|+.+||.++-..+..|.+++.++++ ++|+..+++.-++-|++..+++.+|.+|..+|+
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~----------~eal~~LEeLk~~vP~es~v~~llgki~k~~~~-------- 606 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFSLGRY----------VEALQELEELKELVPQESSVFALLGKIYKRLGN-------- 606 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHhhcch----------HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc--------
Confidence 99999999999999999999999999999 999999999999999999999999999999998
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976 317 VNPREVSPNELYSQSAIYIAAAHALKPSYSV 347 (496)
Q Consensus 317 ~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 347 (496)
...|...|.-|..++|.-..
T Consensus 607 -----------~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 607 -----------TDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred -----------chHHHHhhHHHhcCCCccch
Confidence 66777888888888886554
No 6
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=5.7e-18 Score=174.13 Aligned_cols=194 Identities=19% Similarity=0.200 Sum_probs=161.2
Q ss_pred CChhhhhhcHHHHHHHHHHhhccc--------------------------------------------hhhhHhhccHHH
Q 010976 105 NTPHQLAEQNNAAMELINSVTGVD--------------------------------------------EEGRSRQRILTF 140 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~l~~~--------------------------------------------~~~~~~~g~~~~ 140 (496)
+.++....+|++|...|..+.... +.++..|++++.
T Consensus 360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~ 439 (638)
T KOG1126|consen 360 GRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDT 439 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHH
Confidence 334446778888888888776654 345666788888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 010976 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM 220 (496)
Q Consensus 141 Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~ 220 (496)
||++|++|++++|++.-+|..+|.-+....+ |+.|.++|++||..+|.+..|||.+|.+|.+
T Consensus 440 Aik~f~RAiQldp~faYayTLlGhE~~~~ee--------------~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K---- 501 (638)
T KOG1126|consen 440 AIKCFKRAIQLDPRFAYAYTLLGHESIATEE--------------FDKAMKSFRKALGVDPRHYNAWYGLGTVYLK---- 501 (638)
T ss_pred HHHHHHHhhccCCccchhhhhcCChhhhhHH--------------HHhHHHHHHhhhcCCchhhHHHHhhhhheec----
Confidence 8888888888888888888888888888888 8888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976 221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 300 (496)
Q Consensus 221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg 300 (496)
+++++.|. -.|++|+++||.+......+|.++.++|+. ++|+..|++|+.++|.++-..++.|
T Consensus 502 qek~e~Ae-------~~fqkA~~INP~nsvi~~~~g~~~~~~k~~----------d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 502 QEKLEFAE-------FHFQKAVEINPSNSVILCHIGRIQHQLKRK----------DKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred cchhhHHH-------HHHHhhhcCCccchhHHhhhhHHHHHhhhh----------hHHHHHHHHHHhcCCCCchhHHHHH
Confidence 88888888 788888888888888888888888888888 8888888888888888888888888
Q ss_pred HHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 010976 301 TVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 352 (496)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al 352 (496)
.+++.+++ |.+|...+++.-++-|+.......+
T Consensus 565 ~il~~~~~-------------------~~eal~~LEeLk~~vP~es~v~~ll 597 (638)
T KOG1126|consen 565 SILFSLGR-------------------YVEALQELEELKELVPQESSVFALL 597 (638)
T ss_pred HHHHhhcc-------------------hHHHHHHHHHHHHhCcchHHHHHHH
Confidence 88888888 7888888888888888887433333
No 7
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=4.5e-17 Score=161.52 Aligned_cols=198 Identities=17% Similarity=0.179 Sum_probs=152.4
Q ss_pred hhcHHHHHHHHHHhhccc--------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCC
Q 010976 111 AEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD 176 (496)
Q Consensus 111 ~~~~~~A~~~~~~~l~~~--------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 176 (496)
..+.+.++..+.+++... +..+...|++++|+..|+++++++|+++.+|+++|.++..+|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~----- 113 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGN----- 113 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-----
Confidence 345566666666666321 2235567999999999999999999999999999999999999
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976 177 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 256 (496)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 256 (496)
+++|+..|+++++++|++..+++++|.++.. .|++++|+ ..|+++++++|+++... .+.
T Consensus 114 ---------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~-------~~~~~al~~~P~~~~~~-~~~ 172 (296)
T PRK11189 114 ---------FDAAYEAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQ-------DDLLAFYQDDPNDPYRA-LWL 172 (296)
T ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHH-HHH
Confidence 9999999999999999999999999999999 99999999 78888899999887421 122
Q ss_pred HHHHHccCcchHHH---------------------hhhhH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976 257 LALQELSAIVPARE---------------------KQTIV------RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309 (496)
Q Consensus 257 ~~l~~~g~~~~A~~---------------------~~~~~------~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~ 309 (496)
.++...+++++|.. ..|++ +.+...++.+++++|+...+|+++|.++..+|+
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~- 251 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD- 251 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-
Confidence 23344555655411 12222 222233334446777888899999999999998
Q ss_pred HHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC-cHHHHHHHHH
Q 010976 310 TLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP-SYSVYSSALR 353 (496)
Q Consensus 310 ~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p-~~~~y~~al~ 353 (496)
+.+|..+|+++++++| ++..++.++.
T Consensus 252 ------------------~~~A~~~~~~Al~~~~~~~~e~~~~~~ 278 (296)
T PRK11189 252 ------------------LDEAAALFKLALANNVYNFVEHRYALL 278 (296)
T ss_pred ------------------HHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 8999999999999997 6666666543
No 8
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=7.1e-18 Score=170.95 Aligned_cols=167 Identities=23% Similarity=0.308 Sum_probs=154.5
Q ss_pred hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976 131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 210 (496)
Q Consensus 131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l 210 (496)
.+.+.|++.+|+-+|+.|++.+|.++++|..||.+..+.++ -..||..++++++++|++-.++..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~--------------E~~ai~AL~rcl~LdP~NleaLmaL 359 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN--------------EQNAISALRRCLELDPTNLEALMAL 359 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc--------------hHHHHHHHHHHHhcCCccHHHHHHH
Confidence 35667999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHH-----------------------------------------------------------
Q 010976 211 AIAISDRAKMRGRTKEAEELW----------------------------------------------------------- 231 (496)
Q Consensus 211 g~~~~~~~~~~g~~~eA~~~~----------------------------------------------------------- 231 (496)
|+.|.. .|.-.+|+.++
T Consensus 360 AVSytN----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~ 435 (579)
T KOG1125|consen 360 AVSYTN----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG 435 (579)
T ss_pred HHHHhh----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence 999988 66666666543
Q ss_pred -----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976 232 -----------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 300 (496)
Q Consensus 232 -----------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg 300 (496)
++|++||+.||+.+|++...|+.||-++....+. .+||..|++|+++.|.+.+++||||
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s----------~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS----------EEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc----------HHHHHHHHHHHhcCCCeeeeehhhh
Confidence 4589999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976 301 TVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 344 (496)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 344 (496)
..|..+|. |.+|+.+|-.|+.+.+.
T Consensus 506 IS~mNlG~-------------------ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 506 ISCMNLGA-------------------YKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhh-------------------HHHHHHHHHHHHHhhhc
Confidence 99999998 99999999998888765
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=9.2e-17 Score=180.40 Aligned_cols=183 Identities=15% Similarity=0.064 Sum_probs=167.1
Q ss_pred hhhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976 109 QLAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 179 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 179 (496)
...|++++|+..+.+++... +..+...|++++|+.+|+++++.+|++...+..++..+..+|+
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr-------- 591 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ-------- 591 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC--------
Confidence 46788999999998876642 2334567999999999999999999998888887777777899
Q ss_pred cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976 180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 259 (496)
Q Consensus 180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 259 (496)
+++|+..|+++++++|+ ..+++++|.++.. +|++++|+ ..|+++++++|+++.+++++|.++
T Consensus 592 ------~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~----lG~~deA~-------~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 592 ------PELALNDLTRSLNIAPS-ANAYVARATIYRQ----RHNVPAAV-------SDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred ------HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999997 9999999999999 99999999 899999999999999999999999
Q ss_pred HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHH
Q 010976 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH 339 (496)
Q Consensus 260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~ 339 (496)
...|++ ++|+..|++|++++|+++.+++++|.++..+|+ +..|..+|++++
T Consensus 654 ~~~G~~----------eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-------------------~~eA~~~l~~Al 704 (987)
T PRK09782 654 WDSGDI----------AQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-------------------MAATQHYARLVI 704 (987)
T ss_pred HHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHH
Confidence 999999 999999999999999999999999999999999 889999999999
Q ss_pred hcCCcHH
Q 010976 340 ALKPSYS 346 (496)
Q Consensus 340 ~l~p~~~ 346 (496)
+++|+..
T Consensus 705 ~l~P~~a 711 (987)
T PRK09782 705 DDIDNQA 711 (987)
T ss_pred hcCCCCc
Confidence 9999875
No 10
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.9e-17 Score=159.15 Aligned_cols=155 Identities=20% Similarity=0.163 Sum_probs=147.6
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
+...++.++|+.+|++|+++||....+|..+|.-|.++.+ -..||..|++|+++||.+..+||.||
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--------------t~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--------------THAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--------------cHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 3446899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
.+|.- ++-+.=|+ -+|++|+++.|++...|..||.||.++++. ++|+.+|.+|+...-.
T Consensus 406 QaYei----m~Mh~YaL-------yYfqkA~~~kPnDsRlw~aLG~CY~kl~~~----------~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 406 QAYEI----MKMHFYAL-------YYFQKALELKPNDSRLWVALGECYEKLNRL----------EEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHH----hcchHHHH-------HHHHHHHhcCCCchHHHHHHHHHHHHhccH----------HHHHHHHHHHHhcccc
Confidence 99999 99988888 899999999999999999999999999999 9999999999999998
Q ss_pred CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHh
Q 010976 292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA 340 (496)
Q Consensus 292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 340 (496)
+..+++.||.+|.++++ +.+|+.+|++.+.
T Consensus 465 e~~~l~~LakLye~l~d-------------------~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKD-------------------LNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHH
Confidence 99999999999999998 7888888888776
No 11
>PRK12370 invasion protein regulator; Provisional
Probab=99.75 E-value=2.1e-16 Score=170.02 Aligned_cols=185 Identities=13% Similarity=0.012 Sum_probs=132.8
Q ss_pred hcHHHHHHHHHHhhccchh----------hhH---------hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 010976 112 EQNNAAMELINSVTGVDEE----------GRS---------RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN 172 (496)
Q Consensus 112 ~~~~~A~~~~~~~l~~~~~----------~~~---------~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 172 (496)
+.++.|+.++.+++..+.. ++. ..+++++|+..++++++++|+++.++..+|.++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~- 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE- 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-
Confidence 4456777777777766521 111 12346777777777777777777777777777777777
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010976 173 VSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 252 (496)
Q Consensus 173 ~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~ 252 (496)
+++|+.+|+++++++|+++.+++++|.++.. .|++++|+ ..|+++++++|.++.++
T Consensus 354 -------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi-------~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 354 -------------YIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEAL-------QTINECLKLDPTRAAAG 409 (553)
T ss_pred -------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHhcCCCChhhH
Confidence 7777777777777777777777777777777 77777777 67777777777777766
Q ss_pred HHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHH
Q 010976 253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQS 331 (496)
Q Consensus 253 ~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A 331 (496)
+.++.++...|++ ++|+..++++++.. |+++.++.++|.+|..+|+ +.+|
T Consensus 410 ~~~~~~~~~~g~~----------eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~-------------------~~eA 460 (553)
T PRK12370 410 ITKLWITYYHTGI----------DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK-------------------HELA 460 (553)
T ss_pred HHHHHHHHhccCH----------HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC-------------------HHHH
Confidence 6666666667777 88888888887764 6777778888888888887 6677
Q ss_pred HHHHHHHHhcCCcHHHHHH
Q 010976 332 AIYIAAAHALKPSYSVYSS 350 (496)
Q Consensus 332 ~~~~~~a~~l~p~~~~y~~ 350 (496)
..++.+.....|....+..
T Consensus 461 ~~~~~~~~~~~~~~~~~~~ 479 (553)
T PRK12370 461 RKLTKEISTQEITGLIAVN 479 (553)
T ss_pred HHHHHHhhhccchhHHHHH
Confidence 7777777666666553333
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=4.7e-16 Score=170.23 Aligned_cols=204 Identities=13% Similarity=0.054 Sum_probs=150.7
Q ss_pred ChhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCC
Q 010976 106 TPHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL 175 (496)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~ 175 (496)
......|+++.|+..+.+++... +..+...|++++|+..|+++++++|+++.++..+|.++...|+
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~---- 159 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK---- 159 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC----
Confidence 34456899999999999988876 3345667999999999999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH------------------------
Q 010976 176 DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW------------------------ 231 (496)
Q Consensus 176 ~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~------------------------ 231 (496)
+++|+..|++++..+|++..++..++. +.. .|++++|+..+
T Consensus 160 ----------~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~----~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 160 ----------ELQAISLARTQAQEVPPRGDMIATCLS-FLN----KSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred ----------hHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH----cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 888888888888888888887766543 555 77777776543
Q ss_pred ----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcch----H------------------------HHhhhhHHHHH
Q 010976 232 ----KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP----A------------------------REKQTIVRTAI 279 (496)
Q Consensus 232 ----~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~----A------------------------~~~~~~~~~Ai 279 (496)
++|+..|+++++++|+++.+++++|.+|..+|++++ | +...|++++|+
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 236678889999999999999999999999999843 1 11334445555
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976 280 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 347 (496)
Q Consensus 280 ~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 347 (496)
..|+++++++|+++.++.++|.++...|+ +.+|...|++++..+|++..
T Consensus 305 ~~l~~al~l~P~~~~a~~~La~~l~~~G~-------------------~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 305 PLLQQSLATHPDLPYVRAMYARALRQVGQ-------------------YTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHhCccchH
Confidence 55555555555555555555555555444 66777777777777777653
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=3.8e-16 Score=170.98 Aligned_cols=185 Identities=11% Similarity=0.021 Sum_probs=166.2
Q ss_pred hhhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCC
Q 010976 108 HQLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD 176 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 176 (496)
+...|++++|+..+.+++... ...+...|++++|+..|+++++.+|+++.+++++|.+|..+|+
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~----- 261 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR----- 261 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-----
Confidence 345688899999888876653 2345567999999999999999999999999999999999999
Q ss_pred CCCcchhhhHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010976 177 STSPSKDALLEE----ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 252 (496)
Q Consensus 177 ~~~~~~~~~~~~----A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~ 252 (496)
+++ |+..|+++++++|++..++.++|.++.. +|++++|+ ..|+++++++|+++.++
T Consensus 262 ---------~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~-------~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 262 ---------SREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAI-------PLLQQSLATHPDLPYVR 321 (656)
T ss_pred ---------chhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHH
Confidence 885 8999999999999999999999999999 99999999 89999999999999999
Q ss_pred HHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHH
Q 010976 253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA 332 (496)
Q Consensus 253 ~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~ 332 (496)
.++|.+|...|++ ++|+..|+++++.+|++...+..+|.++...|+ +.+|.
T Consensus 322 ~~La~~l~~~G~~----------~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~-------------------~deA~ 372 (656)
T PRK15174 322 AMYARALRQVGQY----------TAASDEFVQLAREKGVTSKWNRYAAAALLQAGK-------------------TSEAE 372 (656)
T ss_pred HHHHHHHHHCCCH----------HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC-------------------HHHHH
Confidence 9999999999999 999999999999999999888889999999998 67777
Q ss_pred HHHHHHHhcCCcHH
Q 010976 333 IYIAAAHALKPSYS 346 (496)
Q Consensus 333 ~~~~~a~~l~p~~~ 346 (496)
.+|+++++.+|++.
T Consensus 373 ~~l~~al~~~P~~~ 386 (656)
T PRK15174 373 SVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHhChhhc
Confidence 77777777777644
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.73 E-value=9.8e-17 Score=141.70 Aligned_cols=129 Identities=15% Similarity=0.097 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 010976 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM 220 (496)
Q Consensus 141 Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~ 220 (496)
-..+|+++++++|++ ++.+|.++...|+ +++|+.+|++++.++|.+..+|+++|.++..
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~---- 70 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGD--------------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMM---- 70 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----
Confidence 457899999999986 6789999999999 9999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976 221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 300 (496)
Q Consensus 221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg 300 (496)
+|++++|+ ..|+++++++|+++.+++++|.++..+|++ ++|+..|++++++.|+++..+.++|
T Consensus 71 ~g~~~~A~-------~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~----------~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 71 LKEYTTAI-------NFYGHALMLDASHPEPVYQTGVCLKMMGEP----------GLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HhhHHHHH-------HHHHHHHhcCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHH
Confidence 99999999 899999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHcc
Q 010976 301 TVLYGLA 307 (496)
Q Consensus 301 ~~~~~~g 307 (496)
.+...+.
T Consensus 134 ~~~~~l~ 140 (144)
T PRK15359 134 NAQIMVD 140 (144)
T ss_pred HHHHHHH
Confidence 9887655
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.72 E-value=6.3e-16 Score=166.34 Aligned_cols=169 Identities=12% Similarity=-0.004 Sum_probs=149.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976 136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 215 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~ 215 (496)
+.+++|+.+|+++++++|+++.+|..+|.+|..++.. ......+++++|+..+++|++++|+++.++..+|.++.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~-----g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~ 349 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQM-----GIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc-----CCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5688999999999999999999999999998876541 01123456899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010976 216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 295 (496)
Q Consensus 216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a 295 (496)
. .|++++|+ ..|+++++++|+++.+++++|.++...|++ ++|+..|+++++++|.++.+
T Consensus 350 ~----~g~~~~A~-------~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~----------~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 350 I----HSEYIVGS-------LLFKQANLLSPISADIKYYYGWNLFMAGQL----------EEALQTINECLKLDPTRAAA 408 (553)
T ss_pred H----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCChhh
Confidence 9 99999999 899999999999999999999999999999 99999999999999999988
Q ss_pred HHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC-CcHHHHH
Q 010976 296 IYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK-PSYSVYS 349 (496)
Q Consensus 296 ~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~-p~~~~y~ 349 (496)
++.++.+++..|+ +.+|..++++++... |+.+.+.
T Consensus 409 ~~~~~~~~~~~g~-------------------~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 409 GITKLWITYYHTG-------------------IDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred HHHHHHHHHhccC-------------------HHHHHHHHHHHHHhccccCHHHH
Confidence 8888888888888 788888999888764 6666433
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=7.9e-16 Score=172.90 Aligned_cols=184 Identities=13% Similarity=0.034 Sum_probs=169.2
Q ss_pred hhhhhcHHHHHHHHHHhhccch----------hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976 108 HQLAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 177 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~l~~~~----------~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~ 177 (496)
....|+.+.|+.++.+++.... ......|++++|+..|+++++++|+ ..++.++|.++.++|+
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~------ 624 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHN------ 624 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC------
Confidence 3567899999999998887651 1112339999999999999999996 9999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976 178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 257 (496)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 257 (496)
+++|+..|+++++++|+++.+++++|.++.. .|++++|+ ..|+++++++|+++.+++++|.
T Consensus 625 --------~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi-------~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 625 --------VPAAVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSR-------EMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred --------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 8999999999999999999999
Q ss_pred HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHH
Q 010976 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA 337 (496)
Q Consensus 258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~ 337 (496)
++..+|++ ++|+.+|+++++++|++..+....|.+.....+ +..+...|.+
T Consensus 686 al~~lGd~----------~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~-------------------~~~a~~~~~r 736 (987)
T PRK09782 686 VNQRLDDM----------AATQHYARLVIDDIDNQALITPLTPEQNQQRFN-------------------FRRLHEEVGR 736 (987)
T ss_pred HHHHCCCH----------HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH-------------------HHHHHHHHHH
Confidence 99999999 999999999999999999999999999998887 7888888999
Q ss_pred HHhcCCcHH
Q 010976 338 AHALKPSYS 346 (496)
Q Consensus 338 a~~l~p~~~ 346 (496)
+..++|+..
T Consensus 737 ~~~~~~~~~ 745 (987)
T PRK09782 737 RWTFSFDSS 745 (987)
T ss_pred HhhcCccch
Confidence 999888776
No 17
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.71 E-value=1e-15 Score=139.50 Aligned_cols=145 Identities=24% Similarity=0.313 Sum_probs=135.7
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 208 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~ 208 (496)
+.++..+|++..|...+++||+.+|++..+|..++.+|...|+ .+.|.+.|++|+.++|++.++++
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------------~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------------NDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------hhhHHHHHHHHHhcCCCccchhh
Confidence 4457788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHH
Q 010976 209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 286 (496)
Q Consensus 209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al 286 (496)
|.|..++. +|++++|. ..|++|+..- |.-+..+-|+|.|-.+.|+. +.|...|+++|
T Consensus 108 NYG~FLC~----qg~~~eA~-------q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~----------~~A~~~l~raL 166 (250)
T COG3063 108 NYGAFLCA----QGRPEEAM-------QQFERALADPAYGEPSDTLENLGLCALKAGQF----------DQAEEYLKRAL 166 (250)
T ss_pred hhhHHHHh----CCChHHHH-------HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc----------hhHHHHHHHHH
Confidence 99999999 99999999 6777777532 44577899999999999999 99999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcch
Q 010976 287 QLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 287 ~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
+++|+++.....++..++..|+
T Consensus 167 ~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 167 ELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred HhCcCCChHHHHHHHHHHhccc
Confidence 9999999999999999999998
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=2.7e-15 Score=141.27 Aligned_cols=165 Identities=22% Similarity=0.306 Sum_probs=149.8
Q ss_pred hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976 130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 209 (496)
Q Consensus 130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~ 209 (496)
..+...|++++|+..|+++++.+|++..++..+|.++...|+ +++|++.|+++++++|++..++++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~ 104 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE--------------LEKAEDSFRRALTLNPNNGDVLNN 104 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCHHHHHH
Confidence 346668999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976 210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 287 (496)
Q Consensus 210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~ 287 (496)
+|.++.. .|++++|+ ..|++++.. .+.....+.++|.++...|++ ++|+..|+++++
T Consensus 105 ~~~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~ 163 (234)
T TIGR02521 105 YGTFLCQ----QGKYEQAM-------QQFEQAIEDPLYPQPARSLENAGLCALKAGDF----------DKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHH----cccHHHHH-------HHHHHHHhccccccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 9999999 99999999 566666554 356778899999999999999 999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHH
Q 010976 288 LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY 348 (496)
Q Consensus 288 l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y 348 (496)
.+|++..++..+|.++...|+ +..|..++++++.+.|.....
T Consensus 164 ~~~~~~~~~~~la~~~~~~~~-------------------~~~A~~~~~~~~~~~~~~~~~ 205 (234)
T TIGR02521 164 IDPQRPESLLELAELYYLRGQ-------------------YKDARAYLERYQQTYNQTAES 205 (234)
T ss_pred hCcCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999998 889999999999887766533
No 19
>PLN02789 farnesyltranstransferase
Probab=99.69 E-value=2.2e-15 Score=149.87 Aligned_cols=184 Identities=15% Similarity=0.097 Sum_probs=161.4
Q ss_pred hhhhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCCCCCCCCcchhhhHH
Q 010976 109 QLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLE 187 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~-~~~~~~~~~~~~~~~~~ 187 (496)
...+++.+++.++..++... +.+++|+..+.++|+++|++..+|..++.++..++ + ++
T Consensus 31 ~y~~~~~~a~~~~ra~l~~~-------e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~--------------l~ 89 (320)
T PLN02789 31 AYTPEFREAMDYFRAVYASD-------ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDAD--------------LE 89 (320)
T ss_pred eeCHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchh--------------HH
Confidence 45678888888888877544 67889999999999999999999999999999998 5 89
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 188 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT--KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 188 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~--~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
+++..++++++.+|++..+|++++.++.. +|+. ++++ .++.++++++|+|..+|+++|.++..+|++
T Consensus 90 eeL~~~~~~i~~npknyqaW~~R~~~l~~----l~~~~~~~el-------~~~~kal~~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 90 EELDFAEDVAEDNPKNYQIWHHRRWLAEK----LGPDAANKEL-------EFTRKILSLDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHHHHHHHHHHCCcchHHhHHHHHHHHH----cCchhhHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999988 8863 4444 899999999999999999999999999999
Q ss_pred chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976 266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY 345 (496)
Q Consensus 266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 345 (496)
++|++++.++|+++|.|..+|+++|.++.++++.. ...........|..+++.++|++
T Consensus 159 ----------~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~------------~~~~~~e~el~y~~~aI~~~P~N 216 (320)
T PLN02789 159 ----------EDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG------------GLEAMRDSELKYTIDAILANPRN 216 (320)
T ss_pred ----------HHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc------------cccccHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999998774310 00112457888889999999999
Q ss_pred H
Q 010976 346 S 346 (496)
Q Consensus 346 ~ 346 (496)
.
T Consensus 217 ~ 217 (320)
T PLN02789 217 E 217 (320)
T ss_pred c
Confidence 8
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=1.6e-14 Score=136.07 Aligned_cols=165 Identities=17% Similarity=0.147 Sum_probs=149.2
Q ss_pred hhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976 109 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 178 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 178 (496)
...++++.|+..+.+++... +..+..+|++++|+..|+++++.+|.+..++.++|.++...|+
T Consensus 42 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~------- 114 (234)
T TIGR02521 42 LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK------- 114 (234)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc-------
Confidence 45677888888888777654 3345667999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976 179 SPSKDALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 256 (496)
Q Consensus 179 ~~~~~~~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 256 (496)
+++|++.|++++... +.....++++|.++.. .|++++|+ ..|.+++..+|++..++..+|
T Consensus 115 -------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~la 176 (234)
T TIGR02521 115 -------YEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAE-------KYLTRALQIDPQRPESLLELA 176 (234)
T ss_pred -------HHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCcCChHHHHHHH
Confidence 999999999999864 5677899999999999 99999999 889999999999999999999
Q ss_pred HHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 257 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 257 ~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
.++...|++ ++|+..+++++++.|.++..+..++.++...|+
T Consensus 177 ~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 177 ELYYLRGQY----------KDARAYLERYQQTYNQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999999999999999999999887
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.67 E-value=6.4e-15 Score=171.41 Aligned_cols=193 Identities=17% Similarity=0.138 Sum_probs=152.4
Q ss_pred hhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHH--------------HHHHHHH
Q 010976 110 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDA--------------LYNWALV 165 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a--------------~~~lg~~ 165 (496)
..+++++|+..+.+++... +..+.++|++++|+.+|+++++++|++... ...+|.+
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 3456666666666665544 233445566666666666666666654321 1233555
Q ss_pred HHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010976 166 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245 (496)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~ 245 (496)
+...|+ +++|+..|+++++++|++..+++.+|.++.. +|++++|+ ..|+++++++
T Consensus 361 ~~~~g~--------------~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~----~g~~~eA~-------~~y~~aL~~~ 415 (1157)
T PRK11447 361 ALKANN--------------LAQAERLYQQARQVDNTDSYAVLGLGDVAMA----RKDYAAAE-------RYYQQALRMD 415 (1157)
T ss_pred HHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhC
Confidence 555565 9999999999999999999999999999999 99999999 8999999999
Q ss_pred CCCHHHHHHHHHHHHHccCcchH---------------------------------HHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 246 WNSPQALNNWGLALQELSAIVPA---------------------------------REKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 246 P~~~~a~~~lg~~l~~~g~~~~A---------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
|++..++.+++.+|.. +++++| ....|++++|+..|+++++++|++
T Consensus 416 p~~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~ 494 (1157)
T PRK11447 416 PGNTNAVRGLANLYRQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494 (1157)
T ss_pred CCCHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999998754 344443 124688999999999999999999
Q ss_pred HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976 293 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 347 (496)
Q Consensus 293 ~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 347 (496)
+.+++++|.+|...|+ +.+|...|+++++++|+++.
T Consensus 495 ~~~~~~LA~~~~~~G~-------------------~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 495 VWLTYRLAQDLRQAGQ-------------------RSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999 88999999999999998773
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1e-14 Score=144.29 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=175.6
Q ss_pred CCChhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Q 010976 104 GNTPHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV 173 (496)
Q Consensus 104 ~~~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 173 (496)
.+..+...++.++|+.+|++++.++ +..+..+++-..|+..|+.|+.++|.|..+|+.+|..|..++.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M-- 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM-- 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--
Confidence 3445567789999999999999988 4456778899999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976 174 SLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 253 (496)
Q Consensus 174 ~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~ 253 (496)
..=|+-+|++|+++.|++...|..||.||.. +++.++|+ ++|.+++.....+..+++
T Consensus 414 ------------h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAi-------KCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 414 ------------HFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAI-------KCYKRAILLGDTEGSALV 470 (559)
T ss_pred ------------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHH-------HHHHHHHhccccchHHHH
Confidence 9999999999999999999999999999999 99999999 899999999988999999
Q ss_pred HHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHH
Q 010976 254 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ-------LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE 326 (496)
Q Consensus 254 ~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~-------l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~ 326 (496)
.||.+|.++++. .+|..+|++-++ ++|+-..+..-|+.-+.+.++
T Consensus 471 ~LakLye~l~d~----------~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~------------------ 522 (559)
T KOG1155|consen 471 RLAKLYEELKDL----------NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD------------------ 522 (559)
T ss_pred HHHHHHHHHHhH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc------------------
Confidence 999999999999 999999999998 566667777779998888888
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHhhh
Q 010976 327 LYSQSAIYIAAAHALKPSYSVYSSALRLVR 356 (496)
Q Consensus 327 ~~~~A~~~~~~a~~l~p~~~~y~~al~~~~ 356 (496)
|++|-.|..+++..++........++-++
T Consensus 523 -~~~As~Ya~~~~~~~~e~eeak~LlReir 551 (559)
T KOG1155|consen 523 -FDEASYYATLVLKGETECEEAKALLREIR 551 (559)
T ss_pred -hHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 88888888888888666665554444433
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.66 E-value=1.4e-14 Score=168.49 Aligned_cols=194 Identities=15% Similarity=0.133 Sum_probs=150.5
Q ss_pred hhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC------
Q 010976 109 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN------ 172 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~------ 172 (496)
...+++++|+..+.+++... +..+..+|++++|+..|+++++++|++..++..++.+|...+..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 35688999999999998876 34566789999999999999999999999999888887532110
Q ss_pred --CCC--------------------CCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010976 173 --VSL--------------------DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 230 (496)
Q Consensus 173 --~~~--------------------~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~ 230 (496)
+.. ........|++++|++.|+++++++|+++.+++.+|.+|.. +|++++|+
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~----~G~~~~A~-- 515 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ----AGQRSQAD-- 515 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH--
Confidence 000 00011235679999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH------------------------------------------
Q 010976 231 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA------------------------------------------ 268 (496)
Q Consensus 231 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A------------------------------------------ 268 (496)
..|+++++++|+++.+++.+|..+...+++++|
T Consensus 516 -----~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 516 -----ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred -----HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 677777777777776666655544444433222
Q ss_pred ----------------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhc
Q 010976 269 ----------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 313 (496)
Q Consensus 269 ----------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~ 313 (496)
+.+.|++++|+..|+++++++|+++.++++++.+|...|+...+.
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 124577799999999999999999999999999999999855444
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=4.3e-15 Score=147.75 Aligned_cols=193 Identities=19% Similarity=0.176 Sum_probs=159.6
Q ss_pred hhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976 110 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 179 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 179 (496)
..|+...|...+..++.++ +..+..+.+-++-...|.+|..+||++++.|+.+|.+++-+++
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q-------- 409 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ-------- 409 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH--------
Confidence 4566667777777777666 2334556788899999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976 180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 259 (496)
Q Consensus 180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 259 (496)
|++|+..|++++.++|++.-+|..++.++++ +++++++. ..|+.++..-|+.++.++..|.++
T Consensus 410 ------~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m-------~~Fee~kkkFP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 410 ------YEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESM-------KTFEEAKKKFPNCPEVYNLFAEIL 472 (606)
T ss_pred ------HHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHHhCCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999 88888888 666666667777777777777777
Q ss_pred HHccCcchH-------------------------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 260 QELSAIVPA-------------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 260 ~~~g~~~~A-------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
..+++++.| .+..+++..|+..+++|+++||....++..||.+...+|+
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 777777665 1245788999999999999999999999999999999998
Q ss_pred hHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 309 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 309 ~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
..+|+++|+++..+.-...
T Consensus 553 -------------------i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 553 -------------------IDEAIELFEKSAQLARTES 571 (606)
T ss_pred -------------------HHHHHHHHHHHHHHHHhHH
Confidence 7788888888877654433
No 25
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=3.4e-15 Score=131.85 Aligned_cols=126 Identities=17% Similarity=0.079 Sum_probs=117.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHH
Q 010976 190 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 269 (496)
Q Consensus 190 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~ 269 (496)
...|+++++++|++ ++++|.++.. .|++++|+ ..|++++.++|.+..+++++|.++..+|++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~P~~~~a~~~lg~~~~~~g~~---- 74 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQ----EGDYSRAV-------IDFSWLVMAQPWSWRAHIALAGTWMMLKEY---- 74 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHHHHHhhH----
Confidence 46899999999985 6788999999 99999999 899999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976 270 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 349 (496)
Q Consensus 270 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~ 349 (496)
++|+..|+++++++|+++.+++++|.++..+|+ +.+|+.+|.++++++|+++.+.
T Consensus 75 ------~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~-------------------~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 75 ------TTAINFYGHALMLDASHPEPVYQTGVCLKMMGE-------------------PGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred ------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999999999999999999999 8999999999999999999887
Q ss_pred HHHHhhhcC
Q 010976 350 SALRLVRSM 358 (496)
Q Consensus 350 ~al~~~~~~ 358 (496)
......+..
T Consensus 130 ~~~~~~~~~ 138 (144)
T PRK15359 130 EIRQNAQIM 138 (144)
T ss_pred HHHHHHHHH
Confidence 766665543
No 26
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.9e-14 Score=144.38 Aligned_cols=203 Identities=17% Similarity=0.126 Sum_probs=166.3
Q ss_pred CChhhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Q 010976 105 NTPHQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS 174 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 174 (496)
+..+.-.+++.+|..++.++..++ +..+...++.++|+.+|..|-++-|....-..-+|.-|...+.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n--- 395 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN--- 395 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc---
Confidence 333345577777777777777666 2234445777777777777777777777777777777777777
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976 175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 254 (496)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~ 254 (496)
++-|.++|.+|+.++|+++-.+..+|.+.+. .+.|.+|+..|+.++...+..+.-.+.-...++|
T Consensus 396 -----------~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 396 -----------LKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred -----------HHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 9999999999999999999999999999998 8999999977777775555544444445677999
Q ss_pred HHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHH
Q 010976 255 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIY 334 (496)
Q Consensus 255 lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~ 334 (496)
||.++.+++++ ++||..|+++|.+.|.++.++..+|.+|..+|+ ++.|+++
T Consensus 461 LGH~~Rkl~~~----------~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-------------------ld~Aid~ 511 (611)
T KOG1173|consen 461 LGHAYRKLNKY----------EEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-------------------LDKAIDH 511 (611)
T ss_pred HHHHHHHHhhH----------HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-------------------hHHHHHH
Confidence 99999999999 999999999999999999999999999999999 8999999
Q ss_pred HHHHHhcCCcHHHHHHHHHh
Q 010976 335 IAAAHALKPSYSVYSSALRL 354 (496)
Q Consensus 335 ~~~a~~l~p~~~~y~~al~~ 354 (496)
|.+++.++|++......|..
T Consensus 512 fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 512 FHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHhcCCccHHHHHHHHH
Confidence 99999999999866665553
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.63 E-value=7.1e-14 Score=143.91 Aligned_cols=126 Identities=14% Similarity=0.044 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccC
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQELSA 264 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~ 264 (496)
+++|++.|+++++.+|++..+++.+|.++.. .|++++|+ ..|+++++.+|.+ ..++..++.+|...|+
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALA----QGDYAAAI-------EALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 5555555555555555555555555555555 55555555 4444444444443 2344455555555555
Q ss_pred cchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976 265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 344 (496)
Q Consensus 265 ~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 344 (496)
+ ++|+..++++++.+|+.... ..++.++...|+ +..|...++++++..|+
T Consensus 265 ~----------~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~-------------------~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 265 E----------AEGLEFLRRALEEYPGADLL-LALAQLLEEQEG-------------------PEAAQALLREQLRRHPS 314 (389)
T ss_pred H----------HHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCC-------------------HHHHHHHHHHHHHhCcC
Confidence 5 66666666666666655333 556666666665 67788888888888888
Q ss_pred HHHHHHHH
Q 010976 345 YSVYSSAL 352 (496)
Q Consensus 345 ~~~y~~al 352 (496)
+..+...+
T Consensus 315 ~~~~~~l~ 322 (389)
T PRK11788 315 LRGFHRLL 322 (389)
T ss_pred HHHHHHHH
Confidence 77555433
No 28
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.62 E-value=3.5e-14 Score=160.23 Aligned_cols=178 Identities=17% Similarity=0.126 Sum_probs=151.3
Q ss_pred hhhhhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976 107 PHQLAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 177 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~ 177 (496)
.+...|++++|+..+.+++... +..+...|++++|+..++++++.+|++..+++.+|.+|..+|+
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~------ 785 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD------ 785 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC------
Confidence 3445678888888888777654 3345567888888888888888888888888888888888888
Q ss_pred CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976 178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 257 (496)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 257 (496)
+++|+..|+++++.+|+++.++.++|.++.. .|+ .+|+ ..|++++.+.|+++..+.++|.
T Consensus 786 --------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~-~~A~-------~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 786 --------YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE----LKD-PRAL-------EYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred --------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCc-HHHH-------HHHHHHHhhCCCCcHHHHHHHH
Confidence 8888888888888888888888888888888 888 7777 7888888889999999999999
Q ss_pred HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHH
Q 010976 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA 337 (496)
Q Consensus 258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~ 337 (496)
++...|++ ++|+..|+++++++|.++.++++++.+++..|+ +.+|..++++
T Consensus 846 ~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-------------------~~~A~~~~~~ 896 (899)
T TIGR02917 846 LLVEKGEA----------DRALPLLRKAVNIAPEAAAIRYHLALALLATGR-------------------KAEARKELDK 896 (899)
T ss_pred HHHHcCCH----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHH
Confidence 99999998 999999999999999999999999999999998 7788888877
Q ss_pred HH
Q 010976 338 AH 339 (496)
Q Consensus 338 a~ 339 (496)
++
T Consensus 897 ~~ 898 (899)
T TIGR02917 897 LL 898 (899)
T ss_pred Hh
Confidence 65
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.62 E-value=6e-14 Score=144.45 Aligned_cols=190 Identities=12% Similarity=0.094 Sum_probs=162.3
Q ss_pred CChhhhhhcHHHHHHHHHHhhccc--------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 010976 105 NTPHQLAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA 170 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~ 170 (496)
...+...|+++.|+..+..++... +..+...|++++|+..|+++++.+|.+..++..++.++...|
T Consensus 76 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 155 (389)
T PRK11788 76 GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK 155 (389)
T ss_pred HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc
Confidence 334456788888888888776532 334566799999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010976 171 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245 (496)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~-----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~ 245 (496)
+ +++|++.|+++++.+|.+. ..+.++|.++.. .|++++|+ ..|+++++.+
T Consensus 156 ~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~al~~~ 210 (389)
T PRK11788 156 D--------------WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAAR-------ALLKKALAAD 210 (389)
T ss_pred h--------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHH-------HHHHHHHhHC
Confidence 9 9999999999999888753 356788888888 99999999 7888888899
Q ss_pred CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcchhHHhccCCCCCCCCCc
Q 010976 246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 324 (496)
Q Consensus 246 P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 324 (496)
|++..+++.+|.++...|++ ++|+..|++++..+|.+ ..++..++.+|...|+
T Consensus 211 p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---------------- 264 (389)
T PRK11788 211 PQCVRASILLGDLALAQGDY----------AAAIEALERVEEQDPEYLSEVLPKLMECYQALGD---------------- 264 (389)
T ss_pred cCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC----------------
Confidence 99999999999999999999 99999999999999887 4678889999999998
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHH
Q 010976 325 NELYSQSAIYIAAAHALKPSYSVY 348 (496)
Q Consensus 325 ~~~~~~A~~~~~~a~~l~p~~~~y 348 (496)
+.+|..+++++++..|+...+
T Consensus 265 ---~~~A~~~l~~~~~~~p~~~~~ 285 (389)
T PRK11788 265 ---EAEGLEFLRRALEEYPGADLL 285 (389)
T ss_pred ---HHHHHHHHHHHHHhCCCchHH
Confidence 788888899999888886644
No 30
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.61 E-value=2.9e-14 Score=132.71 Aligned_cols=125 Identities=17% Similarity=0.136 Sum_probs=117.4
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
.++.++++..++++++.+|++.++|..+|.+|...|+ +++|+.+|+++++++|++..++.++|.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--------------~~~A~~a~~~Al~l~P~~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--------------YDNALLAYRQALQLRGENAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999 99999999999999999999999999985
Q ss_pred -HHHHHHcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 215 -SDRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 215 -~~~~~~~g~--~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
.. .|+ +++|. ..++++++++|+++.+++++|.++.+.|++ ++|+.+|+++++++|.
T Consensus 118 ~~~----~g~~~~~~A~-------~~l~~al~~dP~~~~al~~LA~~~~~~g~~----------~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 118 YYQ----AGQHMTPQTR-------EMIDKALALDANEVTALMLLASDAFMQADY----------AQAIELWQKVLDLNSP 176 (198)
T ss_pred HHh----cCCCCcHHHH-------HHHHHHHHhCCCChhHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCC
Confidence 56 777 48888 899999999999999999999999999999 9999999999999887
Q ss_pred CHH
Q 010976 292 FHR 294 (496)
Q Consensus 292 ~~~ 294 (496)
+..
T Consensus 177 ~~~ 179 (198)
T PRK10370 177 RVN 179 (198)
T ss_pred Ccc
Confidence 653
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.60 E-value=1.4e-13 Score=155.32 Aligned_cols=191 Identities=19% Similarity=0.188 Sum_probs=128.4
Q ss_pred hhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976 109 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 178 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 178 (496)
...++++.|+..+.+.+... +..+...|++++|+.+|+++++.+|++..+++++|.++...|+
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~------- 514 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN------- 514 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC-------
Confidence 34556666666665554432 2334455666667777776666666666666666666666666
Q ss_pred CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--------------------------
Q 010976 179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK-------------------------- 232 (496)
Q Consensus 179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~-------------------------- 232 (496)
+++|++.|++++..+|++..++..++.++.. .|++++|+..|+
T Consensus 515 -------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 515 -------PDDAIQRFEKVLTIDPKNLRAILALAGLYLR----TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred -------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCH
Confidence 6666666666666666666666666666666 666666663322
Q ss_pred -HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHH
Q 010976 233 -QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 311 (496)
Q Consensus 233 -~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 311 (496)
+|+..+++++..+|.++.+++.+|.++...|++ ++|+..|+++++.+|+++.+++.+|.++...|+
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 650 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL----------NKAVSSFKKLLALQPDSALALLLLADAYAVMKN--- 650 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---
Confidence 123566666666666666666667666666666 888888888888888888888888888888887
Q ss_pred hccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 312 RTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 312 a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
+..|..+|++++..+|++.
T Consensus 651 ----------------~~~A~~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 651 ----------------YAKAITSLKRALELKPDNT 669 (899)
T ss_pred ----------------HHHHHHHHHHHHhcCCCCH
Confidence 6777778888888777755
No 32
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.60 E-value=2.3e-14 Score=130.85 Aligned_cols=137 Identities=24% Similarity=0.270 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976 156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 235 (496)
Q Consensus 156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~ 235 (496)
..+...||.-|++.|+ +..|.+-+++||+.+|++..+|..++.+|.. +|+.+.|.
T Consensus 35 a~arlqLal~YL~~gd--------------~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~----~Ge~~~A~------- 89 (250)
T COG3063 35 AKARLQLALGYLQQGD--------------YAQAKKNLEKALEHDPSYYLAHLVRAHYYQK----LGENDLAD------- 89 (250)
T ss_pred HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChhhHH-------
Confidence 3577889999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcchhHHhc
Q 010976 236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDFHRAIYNLGTVLYGLAEDTLRT 313 (496)
Q Consensus 236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~a~ 313 (496)
+.|++|+.++|++..++||.|..++.+|++ ++|...|++|+.. -+.....+-|+|.|-.+.|+
T Consensus 90 e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~----------~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq----- 154 (250)
T COG3063 90 ESYRKALSLAPNNGDVLNNYGAFLCAQGRP----------EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ----- 154 (250)
T ss_pred HHHHHHHhcCCCccchhhhhhHHHHhCCCh----------HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-----
Confidence 899999999999999999999999999999 9999999999985 34567899999999999998
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 314 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 314 ~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
+..|..+|+++++++|+++
T Consensus 155 --------------~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 155 --------------FDQAEEYLKRALELDPQFP 173 (250)
T ss_pred --------------chhHHHHHHHHHHhCcCCC
Confidence 7899999999999999988
No 33
>PLN02789 farnesyltranstransferase
Probab=99.60 E-value=1e-13 Score=137.91 Aligned_cols=195 Identities=10% Similarity=0.016 Sum_probs=153.8
Q ss_pred hhcHHHHHHHHHHhhccch----------hhhHhhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976 111 AEQNNAAMELINSVTGVDE----------EGRSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 179 (496)
Q Consensus 111 ~~~~~~A~~~~~~~l~~~~----------~~~~~~g-~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 179 (496)
.+..+.|+.++.+++...+ ..+..+| ++++++..+.++++.+|++..+|+.++.++..+++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~-------- 121 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP-------- 121 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc--------
Confidence 3456677788888777662 2233445 68999999999999999999999999999998886
Q ss_pred cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976 180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 259 (496)
Q Consensus 180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 259 (496)
..+++++.+++++++++|++..+|+++|.++.. .|++++++ ++|.++|+.||.|..+|+++|.++
T Consensus 122 ----~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL-------~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 122 ----DAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDEL-------EYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred ----hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHH-------HHHHHHHHHCCCchhHHHHHHHHH
Confidence 113788999999999999999999999999999 88888877 899999999999999999999999
Q ss_pred HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHH
Q 010976 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH 339 (496)
Q Consensus 260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~ 339 (496)
..+++. ......+++++.+..++|.++|+|..+|+.++.++...++.. . .+.++...+.+++
T Consensus 187 ~~~~~l---~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l------~---------~~~~~~~~~~~~~ 248 (320)
T PLN02789 187 TRSPLL---GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL------V---------SDPEVSSVCLEVL 248 (320)
T ss_pred Hhcccc---ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc------c---------cchhHHHHHHHhh
Confidence 887432 000112357888899999999999999999999998744210 0 0234555566666
Q ss_pred hcCCcHH
Q 010976 340 ALKPSYS 346 (496)
Q Consensus 340 ~l~p~~~ 346 (496)
..+|...
T Consensus 249 ~~~~~s~ 255 (320)
T PLN02789 249 SKDSNHV 255 (320)
T ss_pred cccCCcH
Confidence 6666655
No 34
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.59 E-value=1.3e-13 Score=136.89 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=116.5
Q ss_pred ccHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 136 RILTFAAKRYANAIERNP---E-DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P---~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
+..+.++..+.++|...| . .+..|+++|.+|...|+ +++|+..|+++++++|+++.+|+++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~Al~l~P~~~~a~~~lg 105 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL--------------RALARNDFSQALALRPDMADAYNYLG 105 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 567889999999997444 3 37889999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
.++.. .|++++|+ ..|+++++++|++..+++++|.++...|++ ++|+..|+++++++|+
T Consensus 106 ~~~~~----~g~~~~A~-------~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~----------~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 106 IYLTQ----AGNFDAAY-------EAFDSVLELDPTYNYAYLNRGIALYYGGRY----------ELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCC
Confidence 99999 99999999 899999999999999999999999999999 9999999999999999
Q ss_pred CHH
Q 010976 292 FHR 294 (496)
Q Consensus 292 ~~~ 294 (496)
++.
T Consensus 165 ~~~ 167 (296)
T PRK11189 165 DPY 167 (296)
T ss_pred CHH
Confidence 984
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.8e-14 Score=141.10 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=153.0
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
++-.|++-.|...|+++|+++|.+...|..+|.+|....+ -++-.+.|.+|..+||+++++|+.+|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~--------------~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ--------------SEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc--------------cHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 4556999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
.+++- ++++++|+ ..|++++.++|.+..++..++.++++++++ ++++..|+.+++.-|+
T Consensus 402 Qm~fl----L~q~e~A~-------aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~----------~~~m~~Fee~kkkFP~ 460 (606)
T KOG0547|consen 402 QMRFL----LQQYEEAI-------ADFQKAISLDPENAYAYIQLCCALYRQHKI----------AESMKTFEEAKKKFPN 460 (606)
T ss_pred HHHHH----HHHHHHHH-------HHHHHHhhcChhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhCCC
Confidence 99999 88888888 899999999999999999999999999999 9999999999999999
Q ss_pred CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976 292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 344 (496)
Q Consensus 292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 344 (496)
.++++...|.++..+++ |..|..+|.+|+.|.|.
T Consensus 461 ~~Evy~~fAeiLtDqqq-------------------Fd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQ-------------------FDKAVKQYDKAIELEPR 494 (606)
T ss_pred CchHHHHHHHHHhhHHh-------------------HHHHHHHHHHHHhhccc
Confidence 99999999999999998 99999999999999998
No 36
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=2.3e-13 Score=130.35 Aligned_cols=164 Identities=20% Similarity=0.123 Sum_probs=133.7
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH---
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--- 205 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~---~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~--- 205 (496)
+...|++++|+..|++++..+|+++ .+++.+|.++...|+ +++|+..|+++++.+|++..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--------------YAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCCchHH
Confidence 5567999999999999999999876 688999999999999 99999999999999998776
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHccCcch
Q 010976 206 AFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWGLALQELSAIVP 267 (496)
Q Consensus 206 a~~~lg~~~~~~~~~~-g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~-----------------~~lg~~l~~~g~~~~ 267 (496)
+++.+|.++.. . +....-.+.+++|+..|++++..+|++..++ ..+|.++...|++
T Consensus 109 a~~~~g~~~~~----~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~-- 182 (235)
T TIGR03302 109 AYYLRGLSNYN----QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY-- 182 (235)
T ss_pred HHHHHHHHHHH----hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--
Confidence 79999999987 5 1111111334444489999999999986543 3567777777887
Q ss_pred HHHhhhhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976 268 AREKQTIVRTAISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 342 (496)
Q Consensus 268 A~~~~~~~~~Ai~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 342 (496)
.+|+..|++++...|+ .+.+++++|.++..+|+ +.+|..+++....-.
T Consensus 183 --------~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-------------------~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 183 --------VAAINRFETVVENYPDTPATEEALARLVEAYLKLGL-------------------KDLAQDAAAVLGANY 233 (235)
T ss_pred --------HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhC
Confidence 9999999999999765 46899999999999999 788888776655433
No 37
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.57 E-value=1.3e-13 Score=128.24 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL-QELSA 264 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l-~~~g~ 264 (496)
.++++..++++++.+|++..+|+.+|.+|.. .|++++|+ .+|+++++++|+++.++.++|.++ ...|+
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~-------~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNAL-------LAYRQALQLRGENAELYAALATVLYYQAGQ 123 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999 99999999 899999999999999999999975 67777
Q ss_pred --cchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976 265 --IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 342 (496)
Q Consensus 265 --~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 342 (496)
+ ++|+..++++++++|++..+++++|.+++.+|+ |.+|+.+|+++++++
T Consensus 124 ~~~----------~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~-------------------~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 124 HMT----------PQTREMIDKALALDANEVTALMLLASDAFMQAD-------------------YAQAIELWQKVLDLN 174 (198)
T ss_pred CCc----------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhC
Confidence 6 999999999999999999999999999999999 999999999999999
Q ss_pred CcHH
Q 010976 343 PSYS 346 (496)
Q Consensus 343 p~~~ 346 (496)
|.+.
T Consensus 175 ~~~~ 178 (198)
T PRK10370 175 SPRV 178 (198)
T ss_pred CCCc
Confidence 8876
No 38
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.54 E-value=5.7e-13 Score=144.75 Aligned_cols=151 Identities=11% Similarity=0.022 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010976 140 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK 219 (496)
Q Consensus 140 ~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~ 219 (496)
+++.......+..|++++++.+||.+....|+ +++|...++++++++|++..++.+++.++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~--------------~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~--- 132 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHR--------------SDEGLAVWRGIHQRFPDSSEAFILMLRGVKR--- 132 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---
Confidence 34444444556679999999999999999999 9999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010976 220 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 299 (496)
Q Consensus 220 ~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~l 299 (496)
++++++|+ ..+++++..+|+++.+++.+|.++.++|++ ++|+..|+++++.+|+++.++.++
T Consensus 133 -~~~~eeA~-------~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~----------~~A~~~y~~~~~~~p~~~~~~~~~ 194 (694)
T PRK15179 133 -QQGIEAGR-------AEIELYFSGGSSSAREILLEAKSWDEIGQS----------EQADACFERLSRQHPEFENGYVGW 194 (694)
T ss_pred -hccHHHHH-------HHHHHHhhcCCCCHHHHHHHHHHHHHhcch----------HHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 899999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976 300 GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 344 (496)
Q Consensus 300 g~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 344 (496)
|.++...|+ ..+|...|+++++...+
T Consensus 195 a~~l~~~G~-------------------~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 195 AQSLTRRGA-------------------LWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHcCC-------------------HHHHHHHHHHHHHhhCc
Confidence 999999998 66777777777776544
No 39
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=8.6e-14 Score=131.93 Aligned_cols=117 Identities=31% Similarity=0.317 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976 158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 237 (496)
Q Consensus 158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~ 237 (496)
-+.+-|.-+.+.++ |++|+..|.+||+++|+++..|.|++.+|.+ +|.++.|+ +.
T Consensus 83 ~LK~eGN~~m~~~~--------------Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AV-------kD 137 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKD--------------YQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAV-------KD 137 (304)
T ss_pred HHHHHHHHHHHhhh--------------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHH-------HH
Confidence 34455666666666 9999999999999999999999999999999 99999999 89
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976 238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309 (496)
Q Consensus 238 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~ 309 (496)
++.||.+||++..+|..||.+|..+|++ .+|+..|++||.++|++.....+|..+-..+++.
T Consensus 138 ce~Al~iDp~yskay~RLG~A~~~~gk~----------~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 138 CESALSIDPHYSKAYGRLGLAYLALGKY----------EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHccCcH----------HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999 9999999999999999999999999998888863
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=7.4e-14 Score=137.51 Aligned_cols=164 Identities=18% Similarity=0.139 Sum_probs=119.8
Q ss_pred hhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976 110 LAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERN--PEDYDALYNWALVLQESADNVSLDST 178 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~ 178 (496)
..+++++|+..+.+..... ...+...++++++...++++.... +.++..|..+|.++.+.|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~------- 161 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD------- 161 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH-------
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC-------
Confidence 4566666666665544332 233456799999999999988765 7889999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976 179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258 (496)
Q Consensus 179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 258 (496)
+++|+++|+++++++|++..+...++.++.. .|+++++. ..+.......|.++..+..+|.+
T Consensus 162 -------~~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~-------~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 162 -------PDKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEAR-------EALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp -------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHH-------HHHHHHHHH-HTSCCHCHHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHH-------HHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999977 56666666668888899999999
Q ss_pred HHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
+..+|++ ++|+..|+++++.+|+++..+.++|.++...|+
T Consensus 224 ~~~lg~~----------~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 224 YLQLGRY----------EEALEYLEKALKLNPDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHHT-H----------HHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred hcccccc----------ccccccccccccccccccccccccccccccccc
Confidence 9999999 999999999999999999999999999999998
No 41
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.7e-12 Score=127.07 Aligned_cols=179 Identities=19% Similarity=0.139 Sum_probs=164.7
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
+..+++..|+.+-+++|+.+|++..++...|.++..+++ .++|+-+|+.|..+.|..-+.|-.|-.
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--------------~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER--------------HTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc--------------hHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 446889999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHH-----------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976 213 AISDRAKMRGRTKEAEELW-----------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELS 263 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~-----------------------------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 263 (496)
+|.. .|++.||.-.- ++|.+.|++++.++|.+..+-+.++.++...|
T Consensus 377 sYLA----~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 377 SYLA----QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHh----hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 9999 99998887321 57999999999999999999999999999999
Q ss_pred CcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976 264 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 343 (496)
Q Consensus 264 ~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 343 (496)
++ +.+|..++++|...|+ ...+..||.++...+. ++++..+|..|+++||
T Consensus 453 ~~----------~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne-------------------~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 453 PT----------KDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNE-------------------PQKAMEYYYKALRQDP 502 (564)
T ss_pred cc----------chHHHHHHHHHhhccc-cHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHhcCc
Confidence 99 9999999999999887 5678899999998888 8999999999999999
Q ss_pred cHHHHHHHHHhhhcCC
Q 010976 344 SYSVYSSALRLVRSML 359 (496)
Q Consensus 344 ~~~~y~~al~~~~~~~ 359 (496)
.+......+..+.+.-
T Consensus 503 ~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 503 KSKRTLRGLRLLEKSD 518 (564)
T ss_pred cchHHHHHHHHHHhcc
Confidence 9998888888776544
No 42
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.52 E-value=6.9e-13 Score=127.00 Aligned_cols=179 Identities=19% Similarity=0.253 Sum_probs=151.0
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
+...|++..|+..|..|++.+|++..+++.+|.+|..+|+ -..|+..+.++|++.|+...+...+|
T Consensus 48 lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk--------------sk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK--------------SKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC--------------CccchhhHHHHHhcCccHHHHHHHhc
Confidence 3446889999999999999999999999999999999999 88899999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH------------------------------------------HHHHHHHHHhcCCCCH
Q 010976 212 IAISDRAKMRGRTKEAEELWKQ------------------------------------------ATKNYEKAVQLNWNSP 249 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~------------------------------------------A~~~~~~Al~l~P~~~ 249 (496)
.++.. +|++++|...|++ ++......|++.|=++
T Consensus 114 ~vllK----~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda 189 (504)
T KOG0624|consen 114 VVLLK----QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA 189 (504)
T ss_pred hhhhh----cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence 99999 9999999876633 6667777778888888
Q ss_pred HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHH
Q 010976 250 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS 329 (496)
Q Consensus 250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 329 (496)
..+...+.||...|+. ..||..++.+-++..++.+.+|.+..+++..|+ ..
T Consensus 190 ~l~~~Rakc~i~~~e~----------k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd-------------------~~ 240 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEP----------KKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD-------------------AE 240 (504)
T ss_pred HHHHHHHHHHHhcCcH----------HHHHHHHHHHHhccccchHHHHHHHHHHHhhhh-------------------HH
Confidence 8888888888888888 899999999999988999999999999999887 66
Q ss_pred HHHHHHHHHHhcCCcHH----HHHHHHHhhhc
Q 010976 330 QSAIYIAAAHALKPSYS----VYSSALRLVRS 357 (496)
Q Consensus 330 ~A~~~~~~a~~l~p~~~----~y~~al~~~~~ 357 (496)
.+...++.+++++|++. .|.+.-.+++.
T Consensus 241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence 77788999999999987 44444444443
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.52 E-value=1.6e-12 Score=145.13 Aligned_cols=186 Identities=11% Similarity=-0.025 Sum_probs=167.6
Q ss_pred hhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCC
Q 010976 109 QLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNV 173 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~ 173 (496)
...+++++|+..|.+++... +..+..+|++++|+..|+++++.+|.+ ...+..++.++...++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~-- 325 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN-- 325 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc--
Confidence 35578999999999988753 234667899999999999999998876 4677888889999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976 174 SLDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 238 (496)
Q Consensus 174 ~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~ 238 (496)
+++|+..+++++..+|. ...+++.+|.++.. .|++++|+ ..+
T Consensus 326 ------------~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~----~g~~~eA~-------~~l 382 (765)
T PRK10049 326 ------------YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY----SNDLPQAE-------MRA 382 (765)
T ss_pred ------------HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH----cCCHHHHH-------HHH
Confidence 99999999999999873 24578899999999 99999999 899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCC
Q 010976 239 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN 318 (496)
Q Consensus 239 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~ 318 (496)
++++...|++..+++++|.++...|++ ++|+..++++++++|++..+++.+|.++..+|+
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~----------~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~---------- 442 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWP----------RAAENELKKAEVLEPRNINLEVEQAWTALDLQE---------- 442 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC----------
Confidence 999999999999999999999999999 999999999999999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCcHHHH
Q 010976 319 PREVSPNELYSQSAIYIAAAHALKPSYSVY 348 (496)
Q Consensus 319 ~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y 348 (496)
|..|...++++++..|+++..
T Consensus 443 ---------~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 443 ---------WRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred ---------HHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999943
No 44
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.3e-13 Score=130.81 Aligned_cols=109 Identities=24% Similarity=0.296 Sum_probs=105.4
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
..+.++|.+|+..|.+||+++|.++..|.+++.+|.++|. ++.|++.++.||.+||++..+|..||
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--------------~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--------------YEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--------------hHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
.+|.. +|++.+|+ +.|+++|+++|++...+.+|..+-.++++.
T Consensus 157 ~A~~~----~gk~~~A~-------~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 157 LAYLA----LGKYEEAI-------EAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHc----cCcHHHHH-------HHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999 99999999 899999999999999999999999998887
No 45
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.51 E-value=5e-13 Score=116.37 Aligned_cols=119 Identities=17% Similarity=0.158 Sum_probs=113.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC
Q 010976 143 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 222 (496)
Q Consensus 143 ~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g 222 (496)
..|+++++++|++..+.+.+|..+...|+ +++|+..|++++.++|++..+++++|.++.. +|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~ 65 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR--------------YDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LK 65 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HH
Confidence 46889999999999999999999999999 9999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHH
Q 010976 223 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 296 (496)
Q Consensus 223 ~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~ 296 (496)
++++|+ ..|++++..+|.++..++++|.++...|++ ++|+..|+++++++|++....
T Consensus 66 ~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 66 EYEEAI-------DAYALAAALDPDDPRPYFHAAECLLALGEP----------ESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHH-------HHHHHHHhcCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhccccchHH
Confidence 999998 899999999999999999999999999999 999999999999999886643
No 46
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=9e-13 Score=114.75 Aligned_cols=124 Identities=18% Similarity=0.144 Sum_probs=116.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHH
Q 010976 191 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE 270 (496)
Q Consensus 191 ~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~ 270 (496)
+.|++++.++|++..+.+.+|.++.. .|++++|+ ..|++++.++|.++.+++++|.++..+|++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----- 67 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEAL-------KLFQLLAAYDPYNSRYWLGLAACCQMLKEY----- 67 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-----
Confidence 46889999999999999999999999 99999999 889999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHH
Q 010976 271 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 350 (496)
Q Consensus 271 ~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~ 350 (496)
++|+..|++++.++|+++..++++|.++...|+ +..|..+|+++++++|++..+..
T Consensus 68 -----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 68 -----EEAIDAYALAAALDPDDPRPYFHAAECLLALGE-------------------PESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred -----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhccccchHHH
Confidence 999999999999999999999999999999999 89999999999999999987655
Q ss_pred HHHh
Q 010976 351 ALRL 354 (496)
Q Consensus 351 al~~ 354 (496)
....
T Consensus 124 ~~~~ 127 (135)
T TIGR02552 124 LKER 127 (135)
T ss_pred HHHH
Confidence 4443
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1e-12 Score=125.21 Aligned_cols=181 Identities=18% Similarity=0.171 Sum_probs=126.8
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 208 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~ 208 (496)
+.|++++|.+.+|.+.++.+++..| .++.+..|+.+|....+ ...|+..|.+.+...|.+...+.
T Consensus 230 gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQ--------------P~~AL~~~~~gld~fP~~VT~l~ 294 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQ--------------PERALLVIGEGLDSFPFDVTYLL 294 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhcc--------------HHHHHHHHhhhhhcCCchhhhhh
Confidence 4455555666666666666655554 34555555555555555 55555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH---------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976 209 NWAIAISDRAKMRGRTKEAEELWKQ---------------------------ATKNYEKAVQLNWNSPQALNNWGLALQE 261 (496)
Q Consensus 209 ~lg~~~~~~~~~~g~~~eA~~~~~~---------------------------A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 261 (496)
..+.++.. ++++++|+++|+. |+.+|++.|++.-.+++.++|+|.|+..
T Consensus 295 g~ARi~ea----m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y 370 (478)
T KOG1129|consen 295 GQARIHEA----MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY 370 (478)
T ss_pred hhHHHHHH----HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence 55555555 5555555544422 4488888888888889999999999888
Q ss_pred ccCcchHHHhhhhHHHHHHHHHHHHHhc--CC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHH
Q 010976 262 LSAIVPAREKQTIVRTAISKFRAAIQLQ--FD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAA 338 (496)
Q Consensus 262 ~g~~~~A~~~~~~~~~Ai~~~~~Al~l~--P~-~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a 338 (496)
.+++ +-++..|++|+... |+ -.++|||||.+....|+ +..|..+|+-+
T Consensus 371 aqQ~----------D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD-------------------~nlA~rcfrla 421 (478)
T KOG1129|consen 371 AQQI----------DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD-------------------FNLAKRCFRLA 421 (478)
T ss_pred hcch----------hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc-------------------hHHHHHHHHHH
Confidence 8888 88888888888864 32 35788888888888888 88999999999
Q ss_pred HhcCCcHHHHHHHHHhhhc
Q 010976 339 HALKPSYSVYSSALRLVRS 357 (496)
Q Consensus 339 ~~l~p~~~~y~~al~~~~~ 357 (496)
+..|+++.....+|.++..
T Consensus 422 L~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred hccCcchHHHHHhHHHHHh
Confidence 9999999977777776654
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=6.6e-13 Score=130.74 Aligned_cols=190 Identities=19% Similarity=0.182 Sum_probs=115.7
Q ss_pred hhhhcHHHHHHHHHHhhccchh---------hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976 109 QLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 179 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~~~---------~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 179 (496)
...++++.|...+.+++..... .+...+++++|+.++.++.+..+ ++..+..+..++...++
T Consensus 55 ~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~-------- 125 (280)
T PF13429_consen 55 WSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGD-------- 125 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT---------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccchhhHHHHHHHHHhH--------
Confidence 3456667777777766655511 12356899999999999988764 56778888888999999
Q ss_pred cchhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976 180 PSKDALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 257 (496)
Q Consensus 180 ~~~~~~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 257 (496)
++++...++++.... +.++..|+.+|.++.. .|++++|+ .+|+++++++|++..++..++.
T Consensus 126 ------~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~-------~~~~~al~~~P~~~~~~~~l~~ 188 (280)
T PF13429_consen 126 ------YDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDPDKAL-------RDYRKALELDPDDPDARNALAW 188 (280)
T ss_dssp ------HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHHHHHH-------HHHHHHHHH-TT-HHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999988765 6788999999999999 99999999 8999999999999999999999
Q ss_pred HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHH
Q 010976 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA 337 (496)
Q Consensus 258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~ 337 (496)
++...|++ +++...++...+..|+++..+..+|.++..+|+ +..|..+|++
T Consensus 189 ~li~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-------------------~~~Al~~~~~ 239 (280)
T PF13429_consen 189 LLIDMGDY----------DEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-------------------YEEALEYLEK 239 (280)
T ss_dssp HHCTTCHH----------HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--------------------HHHHHHHHHH
T ss_pred HHHHCCCh----------HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-------------------cccccccccc
Confidence 99999999 888888888888889999999999999999999 8999999999
Q ss_pred HHhcCCcHHHHHHHHH
Q 010976 338 AHALKPSYSVYSSALR 353 (496)
Q Consensus 338 a~~l~p~~~~y~~al~ 353 (496)
+++.+|+++.....+.
T Consensus 240 ~~~~~p~d~~~~~~~a 255 (280)
T PF13429_consen 240 ALKLNPDDPLWLLAYA 255 (280)
T ss_dssp HHHHSTT-HHHHHHHH
T ss_pred cccccccccccccccc
Confidence 9999999995544443
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.45 E-value=9.4e-12 Score=132.33 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=58.2
Q ss_pred hhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976 271 KQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 349 (496)
Q Consensus 271 ~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~ 349 (496)
..|++++|+..|..++...+. +...|+.+|.||..+|. |..|+++|++++.++|++.+.+
T Consensus 426 ~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e-------------------~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 426 NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE-------------------YEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh-------------------HHHHHHHHHHHHhcCCCchhhh
Confidence 467778888888888777653 46788999999999998 8999999999999999999777
Q ss_pred HHHHhhhcCCchh
Q 010976 350 SALRLVRSMLPLP 362 (496)
Q Consensus 350 ~al~~~~~~~p~~ 362 (496)
-.|.-+...+..+
T Consensus 487 i~Lasl~~~~g~~ 499 (895)
T KOG2076|consen 487 ITLASLYQQLGNH 499 (895)
T ss_pred hhHHHHHHhcCCH
Confidence 7766655545333
No 50
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.44 E-value=9.1e-12 Score=116.21 Aligned_cols=166 Identities=22% Similarity=0.175 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 010976 139 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA 218 (496)
Q Consensus 139 ~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~ 218 (496)
..+...+-+....+|++..+ .+++..+...|+ -+.+..+..++...+|.+...+..+|.....
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~--------------a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-- 112 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGD--------------ADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-- 112 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhccc--------------ccchHHHHhhhhccCcccHHHHHHHHHHHHH--
Confidence 33666666677777888777 777888888777 6777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010976 219 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 298 (496)
Q Consensus 219 ~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~ 298 (496)
.|+|.+|+ ..++++..++|++.++|+.+|.+|.+.|++ ++|...|.+++++.|+++.+.+|
T Consensus 113 --~g~~~~A~-------~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~----------~~Ar~ay~qAl~L~~~~p~~~nN 173 (257)
T COG5010 113 --NGNFGEAV-------SVLRKAARLAPTDWEAWNLLGAALDQLGRF----------DEARRAYRQALELAPNEPSIANN 173 (257)
T ss_pred --hcchHHHH-------HHHHHHhccCCCChhhhhHHHHHHHHccCh----------hHHHHHHHHHHHhccCCchhhhh
Confidence 77777777 777777888888888888888888888877 78888888888888888888888
Q ss_pred HHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhcCC
Q 010976 299 LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSML 359 (496)
Q Consensus 299 lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~~~ 359 (496)
+|..|.-.|+ +..|..++..+...-+.+....++|.++....
T Consensus 174 lgms~~L~gd-------------------~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 174 LGMSLLLRGD-------------------LEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred HHHHHHHcCC-------------------HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 8888877777 67777777777777776776666666654433
No 51
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.6e-12 Score=127.51 Aligned_cols=162 Identities=21% Similarity=0.160 Sum_probs=132.0
Q ss_pred hhhcHHHHHHHHHHhhccc--hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHH
Q 010976 110 LAEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLE 187 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~--~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 187 (496)
..+.++.++.+|.+++... .....+....++++.......-++|.-...-...|+.++..|+ |.
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd--------------y~ 375 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD--------------YP 375 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC--------------HH
Confidence 3345555555555544333 2233334445555555555555567666667777888888888 99
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcch
Q 010976 188 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP 267 (496)
Q Consensus 188 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~ 267 (496)
.|+++|.+||..+|+++..|.|+|.||.. +|.+..|+ ..++++++++|++..+|.+-|.++..+.+|
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~k----L~~~~~aL-------~Da~~~ieL~p~~~kgy~RKg~al~~mk~y-- 442 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLK----LGEYPEAL-------KDAKKCIELDPNFIKAYLRKGAALRAMKEY-- 442 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHhcCchHHHHHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999 99999999 889999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010976 268 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 306 (496)
Q Consensus 268 A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~ 306 (496)
+.|++.|+++++++|++.++.-.+..|+..+
T Consensus 443 --------dkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 443 --------DKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred --------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988764
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.43 E-value=7.4e-12 Score=139.91 Aligned_cols=143 Identities=10% Similarity=-0.019 Sum_probs=136.0
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
...|++++|+..|.+++..+|....++..+|.++...|+ +++|+..|+++++++|++..++..+|.
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ--------------WQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 346999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
++.. .|++++|+ ..++++++.+|+++. +..+|.++...|++ ++|+..|+++++++|++
T Consensus 92 ~l~~----~g~~~eA~-------~~l~~~l~~~P~~~~-~~~la~~l~~~g~~----------~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 92 TLAD----AGQYDEAL-------VKAKQLVSGAPDKAN-LLALAYVYKRAGRH----------WDELRAMTQALPRAPQT 149 (765)
T ss_pred HHHH----CCCHHHHH-------HHHHHHHHhCCCCHH-HHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCC
Confidence 9999 99999999 899999999999999 99999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHcchhHH
Q 010976 293 HRAIYNLGTVLYGLAEDTL 311 (496)
Q Consensus 293 ~~a~~~lg~~~~~~g~~~~ 311 (496)
..++..++.++...+....
T Consensus 150 ~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 150 QQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHHHHHHHHHCCChHH
Confidence 9999999999988776443
No 53
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=4.9e-12 Score=110.68 Aligned_cols=108 Identities=18% Similarity=0.232 Sum_probs=102.5
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH
Q 010976 147 NAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK 225 (496)
Q Consensus 147 ~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~ 225 (496)
....+. ++..+..|.+|..++..|+ +++|++.|+-...++|.++..|++||.++.. +|++.
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~--------------l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~ 86 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKE--------------FAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWG 86 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHH
Confidence 345567 8888999999999999999 9999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976 226 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 289 (496)
Q Consensus 226 eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~ 289 (496)
+|+ .+|.+|+.++|+++.+++++|.++..+|+. +.|++.|+.|+...
T Consensus 87 ~AI-------~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~----------~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 87 EAI-------YAYGRAAQIKIDAPQAPWAAAECYLACDNV----------CYAIKALKAVVRIC 133 (157)
T ss_pred HHH-------HHHHHHHhcCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHh
Confidence 999 899999999999999999999999999999 99999999999886
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=9.4e-12 Score=129.51 Aligned_cols=174 Identities=17% Similarity=0.159 Sum_probs=149.1
Q ss_pred hhhhhhcHHHHHHHHHHhhccc------------------hhhhHhhccHHHHHHHHHHHHHh--------CCCCHHHHH
Q 010976 107 PHQLAEQNNAAMELINSVTGVD------------------EEGRSRQRILTFAAKRYANAIER--------NPEDYDALY 160 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~l~~~------------------~~~~~~~g~~~~Ai~~~~~al~~--------~P~~~~a~~ 160 (496)
.+...+++++|+.++.+++... +..+..++++.+|+..|++|+.+ +|..+.++.
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~ 287 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLN 287 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4457899999999999988872 34466789999999999999986 466678999
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976 161 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 232 (496)
Q Consensus 161 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 232 (496)
+||.+|...|+ |++|..+|++|+++ .|.-+..+.+++.++.. ++++++|+.+|+
T Consensus 288 nLa~ly~~~GK--------------f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q 349 (508)
T KOG1840|consen 288 NLAVLYYKQGK--------------FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQ 349 (508)
T ss_pred HHHHHHhccCC--------------hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHH
Confidence 99999999999 99999999999998 33445678899999999 999999999999
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHH
Q 010976 233 QATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--------FDFHRAIYNLGTVL 303 (496)
Q Consensus 233 ~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~--------P~~~~a~~~lg~~~ 303 (496)
++++.|..+...+- .-+..+.|||.+|+.+|++ ++|...|++||.+. +.....+++||..|
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~----------~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY----------KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY 419 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence 99999998776553 6788999999999999999 99999999999873 34467888999999
Q ss_pred HHcch
Q 010976 304 YGLAE 308 (496)
Q Consensus 304 ~~~g~ 308 (496)
.++++
T Consensus 420 ~~~k~ 424 (508)
T KOG1840|consen 420 EELKK 424 (508)
T ss_pred HHhcc
Confidence 77775
No 55
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.41 E-value=1.1e-11 Score=134.93 Aligned_cols=135 Identities=11% Similarity=0.069 Sum_probs=125.8
Q ss_pred hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976 130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 209 (496)
Q Consensus 130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~ 209 (496)
......|.+++|...++.+++++|++..++.+++.++.++++ +++|+..+++++..+|+++.+++.
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~--------------~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG--------------IEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHhhcCCCCHHHHHH
Confidence 334567999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976 210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 289 (496)
Q Consensus 210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~ 289 (496)
+|.++.. +|++++|+ .+|++++..+|+++.++.++|.++..+|+. ++|...|++|+...
T Consensus 160 ~a~~l~~----~g~~~~A~-------~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~----------~~A~~~~~~a~~~~ 218 (694)
T PRK15179 160 EAKSWDE----IGQSEQAD-------ACFERLSRQHPEFENGYVGWAQSLTRRGAL----------WRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHH----hcchHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhh
Confidence 9999999 99999999 899999999999999999999999999999 99999999999987
Q ss_pred CCCHHHHHHH
Q 010976 290 FDFHRAIYNL 299 (496)
Q Consensus 290 P~~~~a~~~l 299 (496)
.+-...+.++
T Consensus 219 ~~~~~~~~~~ 228 (694)
T PRK15179 219 GDGARKLTRR 228 (694)
T ss_pred CcchHHHHHH
Confidence 6655654443
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=3e-12 Score=122.03 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=126.6
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
++++++|+++|+.+++++|.+.++....|.-|+--++ .+-|+.+|++.|++--.+++.+.|+|.|.
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~--------------PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNN--------------PEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCC--------------hHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 4566666666666666666666666666666666666 88888888888888888888899999998
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLN--W-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~--P-~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
.. .++++-++ ..|++|+..- | .-...|+|+|.+....|++ .-|..+|+-+|..|++
T Consensus 369 ~y----aqQ~D~~L-------~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~----------nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 369 LY----AQQIDLVL-------PSFQRALSTATQPGQAADVWYNLGFVAVTIGDF----------NLAKRCFRLALTSDAQ 427 (478)
T ss_pred Hh----hcchhhhH-------HHHHHHHhhccCcchhhhhhhccceeEEeccch----------HHHHHHHHHHhccCcc
Confidence 88 88888888 7777777554 3 3578999999999999999 9999999999999999
Q ss_pred CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
+.++++|||.+-.+.|+ ...|..++..|-...|+..
T Consensus 428 h~ealnNLavL~~r~G~-------------------i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGD-------------------ILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred hHHHHHhHHHHHhhcCc-------------------hHHHHHHHHHhhhhCcccc
Confidence 99999999999999998 5677777777777776544
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=1.6e-10 Score=120.10 Aligned_cols=207 Identities=14% Similarity=0.003 Sum_probs=165.8
Q ss_pred hhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCCCCCC
Q 010976 109 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDS 177 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~-~a~~~lg~~~~~~~~~~~~~~ 177 (496)
...|+++.|.+.+.++.... ++....+|+++.|..+|.++.+..|++. .+...++.++...|+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~------ 168 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE------ 168 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC------
Confidence 45677888887777766553 2334456899999999999988888875 456667888888888
Q ss_pred CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------
Q 010976 178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT---------------------- 235 (496)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~---------------------- 235 (496)
+++|...+++.++.+|+++.++..++.++.. .|++++|++.+++..
T Consensus 169 --------~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~----~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 169 --------LHAARHGVDKLLEMAPRHKEVLKLAEEAYIR----SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred --------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 999988886654311
Q ss_pred ---------HHHHHHHhcCC----CCHHHHHHHHHHHHHccCcchHHH--------------------------hhhhHH
Q 010976 236 ---------KNYEKAVQLNW----NSPQALNNWGLALQELSAIVPARE--------------------------KQTIVR 276 (496)
Q Consensus 236 ---------~~~~~Al~l~P----~~~~a~~~lg~~l~~~g~~~~A~~--------------------------~~~~~~ 276 (496)
+.+.++.+..| +++..+..++..+...|++++|.. ..++.+
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 24444555566 589999999999999999988821 236678
Q ss_pred HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHH--HHHhcCCcHHHHHHHH
Q 010976 277 TAISKFRAAIQLQFDFH--RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA--AAHALKPSYSVYSSAL 352 (496)
Q Consensus 277 ~Ai~~~~~Al~l~P~~~--~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~--~a~~l~p~~~~y~~al 352 (496)
.++..++++++.+|+++ ..+..+|.+++..|+ |.+|..+|+ ++++.+|+...+....
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-------------------~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-------------------FIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-------------------HHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 89999999999999999 889999999999999 999999999 6888999988766433
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=9.8e-12 Score=129.39 Aligned_cols=166 Identities=21% Similarity=0.238 Sum_probs=142.5
Q ss_pred hhhHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--
Q 010976 130 EGRSRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-- 199 (496)
Q Consensus 130 ~~~~~~g~~~~Ai~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-- 199 (496)
..+..+|+|++|+..|+.|+++ .|.-......+|.+|..+++ |.+|+..|++|+.+
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k--------------~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK--------------YDEAVNLYEEALTIRE 272 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHHH
Confidence 3467789999999999999998 67777778889999999999 99999999999998
Q ss_pred ------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCcchHHHhh
Q 010976 200 ------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQ 272 (496)
Q Consensus 200 ------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~A~~~~ 272 (496)
+|.-+.++.+||.+|.. .|++++|..+++.|+..+++.+..+ |.-...+.+++.++..++++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~----~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~------- 341 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYK----QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY------- 341 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch-------
Confidence 56667889999999999 9999999999999999999955444 33456788999999999999
Q ss_pred hhHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976 273 TIVRTAISKFRAAIQLQ--------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 342 (496)
Q Consensus 273 ~~~~~Ai~~~~~Al~l~--------P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 342 (496)
++|+..|++++++- +.-+..+.|||.+|+.+|+ |.+|..+|++|+.+.
T Consensus 342 ---Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-------------------~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 342 ---EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-------------------YKEAEELYKKAIQIL 397 (508)
T ss_pred ---hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-------------------hhHHHHHHHHHHHHH
Confidence 99999999999872 2446789999999999999 677777777776653
No 59
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.1e-11 Score=121.36 Aligned_cols=173 Identities=18% Similarity=0.208 Sum_probs=153.2
Q ss_pred HHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 010976 118 MELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT 197 (496)
Q Consensus 118 ~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 197 (496)
..++.+.+...+..+.+.++++.|+.+|++++.-.-. ..++..+.. .+++++..+...
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~--------------~Ek~~k~~e~~a 351 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKE--------------AEKALKEAERKA 351 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHH--------------HHHHHHHHHHHH
Confidence 3445566666667788889999999999998776543 566667777 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHH
Q 010976 198 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT 277 (496)
Q Consensus 198 ~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~ 277 (496)
-++|.-+.--..-|+.++. .|+|..|+ ..|.+||..+|+++.+|.|+|.||.++|.+ ..
T Consensus 352 ~~~pe~A~e~r~kGne~Fk----~gdy~~Av-------~~YteAIkr~P~Da~lYsNRAac~~kL~~~----------~~ 410 (539)
T KOG0548|consen 352 YINPEKAEEEREKGNEAFK----KGDYPEAV-------KHYTEAIKRDPEDARLYSNRAACYLKLGEY----------PE 410 (539)
T ss_pred hhChhHHHHHHHHHHHHHh----ccCHHHHH-------HHHHHHHhcCCchhHHHHHHHHHHHHHhhH----------HH
Confidence 9999998888888999999 99999999 899999999999999999999999999999 99
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 010976 278 AISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 352 (496)
Q Consensus 278 Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al 352 (496)
|+...+.+++++|++..+|..-|.++..+.+ |..|...|.++++++|++..+...+
T Consensus 411 aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~-------------------ydkAleay~eale~dp~~~e~~~~~ 466 (539)
T KOG0548|consen 411 ALKDAKKCIELDPNFIKAYLRKGAALRAMKE-------------------YDKALEAYQEALELDPSNAEAIDGY 466 (539)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHhcCchhHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999999988554443
No 60
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.38 E-value=3.3e-12 Score=113.04 Aligned_cols=121 Identities=27% Similarity=0.398 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 229 ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 229 ~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
-.|++|.+.++.....||.+++.++++|.+|.++.++....+....+++|+..|++||.++|+...+++++|.+|..++.
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 45777889999999999999999999999999999997777777899999999999999999999999999999999996
Q ss_pred hHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhc
Q 010976 309 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 357 (496)
Q Consensus 309 ~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~ 357 (496)
... ......++|..|..||++|...+|++..|+.+|.+..+
T Consensus 85 l~~--------d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 85 LTP--------DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp H-----------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred hcC--------ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 321 11123457999999999999999999999999999865
No 61
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=6.6e-12 Score=123.16 Aligned_cols=162 Identities=17% Similarity=0.214 Sum_probs=147.6
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH---
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--- 205 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~--- 205 (496)
.+++..+|++++|+..--..+++++.+.++++.+|.+++...+ .+.|+.+|+++|.++|++..
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~--------------~~ka~~hf~qal~ldpdh~~sk~ 241 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN--------------ADKAINHFQQALRLDPDHQKSKS 241 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc--------------hHHHHHHHhhhhccChhhhhHHh
Confidence 4566678999999999999999999999999999999999999 99999999999999999764
Q ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCcchHHHhh
Q 010976 206 ---------AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQ 272 (496)
Q Consensus 206 ---------a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~~A~~~~ 272 (496)
.+...|+-.+. .|++.+|. ++|..+|.++|++ +..|.|++.+...+|+.
T Consensus 242 ~~~~~k~le~~k~~gN~~fk----~G~y~~A~-------E~Yteal~idP~n~~~naklY~nra~v~~rLgrl------- 303 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFK----NGNYRKAY-------ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL------- 303 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhh----ccchhHHH-------HHHHHhhcCCccccchhHHHHHHhHhhhcccCCc-------
Confidence 35566666677 88888888 8999999999985 56799999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976 273 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 344 (496)
Q Consensus 273 ~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 344 (496)
.+|+..++.|+++++....++...|.|+..+++ |..|.++|+++.++.-+
T Consensus 304 ---~eaisdc~~Al~iD~syikall~ra~c~l~le~-------------------~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 304 ---REAISDCNEALKIDSSYIKALLRRANCHLALEK-------------------WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ---hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999 89999999999988776
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.36 E-value=4.9e-11 Score=127.74 Aligned_cols=197 Identities=12% Similarity=0.064 Sum_probs=112.2
Q ss_pred hhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976 110 LAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 178 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 178 (496)
..++|..|+.+|..++... +.|+.++++.+.|+..|.++++++|.+..++..||.+-....+.
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~------ 249 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDS------ 249 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccch------
Confidence 3456666666666655544 34455666777777777777777777777777766666555441
Q ss_pred CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH----------------------------
Q 010976 179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL---------------------------- 230 (496)
Q Consensus 179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~---------------------------- 230 (496)
..+..++..+.++...+|+++.++..|+..++. .|+|..+...
T Consensus 250 -----~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 250 -----DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred -----HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 225556666666666666666665555555555 4444444322
Q ss_pred --HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976 231 --WKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307 (496)
Q Consensus 231 --~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g 307 (496)
|++|..+|.++++.++++ .-.++.+|.+|...|++ +.|+.+|++++...|++.+...-||.+|...+
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl----------e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL----------EESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH----------HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 223335555555555554 44455555555555555 66666666666666666666666666665554
Q ss_pred hhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 308 EDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 308 ~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
+. .+..+.+..+..++++..|.+.
T Consensus 391 ~~---------------~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 391 KK---------------QEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred hh---------------hHHHHHHHHHHHHHHhcccccH
Confidence 10 1113566666666666666555
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.9e-11 Score=124.17 Aligned_cols=179 Identities=16% Similarity=0.207 Sum_probs=136.4
Q ss_pred hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976 131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 210 (496)
Q Consensus 131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l 210 (496)
+++..|+..+=...-.+.+...|+.+-.|+..|..|...|+ +.+|..+|.|+..++|....+|..+
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k--------------~seARry~SKat~lD~~fgpaWl~f 352 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK--------------YSEARRYFSKATTLDPTFGPAWLAF 352 (611)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--------------cHHHHHHHHHHhhcCccccHHHHHH
Confidence 44555555555555556666666666666666666666666 6666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH---------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976 211 AIAISDRAKMRGRTKEAEELWKQ---------------------------ATKNYEKAVQLNWNSPQALNNWGLALQELS 263 (496)
Q Consensus 211 g~~~~~~~~~~g~~~eA~~~~~~---------------------------A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 263 (496)
|..+.. .|..++|+.+|.. |-..|.+|+.+.|.++-.++.+|.+.+..+
T Consensus 353 ghsfa~----e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~ 428 (611)
T KOG1173|consen 353 GHSFAG----EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYE 428 (611)
T ss_pred hHHhhh----cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHh
Confidence 666666 6666666655522 558999999999999999999999999999
Q ss_pred CcchHHHhhhhHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHH
Q 010976 264 AIVPAREKQTIVRTAISKFRAAIQLQ-------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA 336 (496)
Q Consensus 264 ~~~~A~~~~~~~~~Ai~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~ 336 (496)
.+ .+|+.+|+.++..- +.....+.|||.++.++++ |.+|+.+|+
T Consensus 429 ~y----------~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~-------------------~~eAI~~~q 479 (611)
T KOG1173|consen 429 EY----------PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK-------------------YEEAIDYYQ 479 (611)
T ss_pred hh----------HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh-------------------HHHHHHHHH
Confidence 99 99999999999431 2345679999999999999 999999999
Q ss_pred HHHhcCCcHHHHHHHHHhhh
Q 010976 337 AAHALKPSYSVYSSALRLVR 356 (496)
Q Consensus 337 ~a~~l~p~~~~y~~al~~~~ 356 (496)
+++.+.|.+..+..++..+-
T Consensus 480 ~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIY 499 (611)
T ss_pred HHHHcCCCchhHHHHHHHHH
Confidence 99999999997777766543
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=2.4e-10 Score=118.18 Aligned_cols=205 Identities=13% Similarity=0.055 Sum_probs=167.0
Q ss_pred hhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCCCCCCCC
Q 010976 110 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDAL-YNWALVLQESADNVSLDST 178 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~-~~lg~~~~~~~~~~~~~~~ 178 (496)
..|+++.|...+.+..... ......+|+++.|..+|.++.+.+|++..+. ...+.++...|+
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~------- 168 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNE------- 168 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC-------
Confidence 3477777777666554431 2223567999999999999999999986444 344899999999
Q ss_pred CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------
Q 010976 179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK---------------------- 236 (496)
Q Consensus 179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~---------------------- 236 (496)
+++|++.++++++.+|+++.++..++.+|.. .|++++|++.+.+..+
T Consensus 169 -------~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 169 -------NHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred -------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999966644221
Q ss_pred ---------HHHHHH----hcCCCCHHHHHHHHHHHHHccCcchHHH---------------------hhhhHHHHHHHH
Q 010976 237 ---------NYEKAV----QLNWNSPQALNNWGLALQELSAIVPARE---------------------KQTIVRTAISKF 282 (496)
Q Consensus 237 ---------~~~~Al----~l~P~~~~a~~~lg~~l~~~g~~~~A~~---------------------~~~~~~~Ai~~~ 282 (496)
.+.+.. ...|+++.++..++..+...|+.++|.. ..++.++++...
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHH
Confidence 111111 2346789999999999999999988822 348899999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 010976 283 RAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA 351 (496)
Q Consensus 283 ~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~a 351 (496)
++.++.+|+++..+..+|.++...++ |.+|..+|+++++.+|+...+...
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~~-------------------~~~A~~~le~al~~~P~~~~~~~L 367 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHGE-------------------WQEASLAFRAALKQRPDAYDYAWL 367 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999999999999999999999999 999999999999999999875543
No 65
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.35 E-value=3.2e-11 Score=112.61 Aligned_cols=143 Identities=22% Similarity=0.171 Sum_probs=136.1
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
++..|+-+.+.....++...+|.+...+..+|...+..|+ |.+|+..++++..++|++.++|..+|
T Consensus 76 ~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~--------------~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 76 LYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN--------------FGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred HHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc--------------hHHHHHHHHHHhccCCCChhhhhHHH
Confidence 4456888888899999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
.+|.+ .|++++|. ..|.+++++.|+++.+.+|+|..|.-.|++ +.|...+..+....+.
T Consensus 142 aaldq----~Gr~~~Ar-------~ay~qAl~L~~~~p~~~nNlgms~~L~gd~----------~~A~~lll~a~l~~~a 200 (257)
T COG5010 142 AALDQ----LGRFDEAR-------RAYRQALELAPNEPSIANNLGMSLLLRGDL----------EDAETLLLPAYLSPAA 200 (257)
T ss_pred HHHHH----ccChhHHH-------HHHHHHHHhccCCchhhhhHHHHHHHcCCH----------HHHHHHHHHHHhCCCC
Confidence 99999 99999999 899999999999999999999999999999 9999999999999999
Q ss_pred CHHHHHHHHHHHHHcchh
Q 010976 292 FHRAIYNLGTVLYGLAED 309 (496)
Q Consensus 292 ~~~a~~~lg~~~~~~g~~ 309 (496)
+..+..||+.+....|+.
T Consensus 201 d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 201 DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred chHHHHHHHHHHhhcCCh
Confidence 999999999999999983
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=6.3e-12 Score=128.13 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976 138 LTFAAKRYANAIERNP--EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 215 (496)
Q Consensus 138 ~~~Ai~~~~~al~~~P--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~ 215 (496)
+..-.+.|-.+...+| .+++++..||.+|...++ |++|+.+|+.||..+|++...|+.||..+.
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e--------------fdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE--------------FDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH--------------HHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 4456678888999999 799999999999999999 999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC----
Q 010976 216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD---- 291 (496)
Q Consensus 216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~---- 291 (496)
. ..+..+|+ ..|++|+++.|++..+++|||.++..+|.| ++|+.+|-.||.+.+.
T Consensus 476 N----~~~s~EAI-------sAY~rALqLqP~yVR~RyNlgIS~mNlG~y----------kEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 476 N----GNRSEEAI-------SAYNRALQLQPGYVRVRYNLGISCMNLGAY----------KEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred C----CcccHHHH-------HHHHHHHhcCCCeeeeehhhhhhhhhhhhH----------HHHHHHHHHHHHhhhccccc
Confidence 9 99999999 899999999999999999999999999999 9999999999998665
Q ss_pred ------CHHHHHHHHHHHHHcch
Q 010976 292 ------FHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 292 ------~~~a~~~lg~~~~~~g~ 308 (496)
+-.+|-.|-.++...++
T Consensus 535 ~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 535 NKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred ccCCcchHHHHHHHHHHHHHcCC
Confidence 12577777777777776
No 67
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.35 E-value=2e-11 Score=124.04 Aligned_cols=115 Identities=23% Similarity=0.131 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976 159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 238 (496)
Q Consensus 159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~ 238 (496)
+...|..++..|+ |++|+.+|+++++++|+++.+|+++|.+|.. +|++++|+ ..+
T Consensus 5 l~~~a~~a~~~~~--------------~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----~g~~~eAl-------~~~ 59 (356)
T PLN03088 5 LEDKAKEAFVDDD--------------FALAVDLYTQAIDLDPNNAELYADRAQANIK----LGNFTEAV-------ADA 59 (356)
T ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHH
Confidence 4566888888899 9999999999999999999999999999999 99999999 899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 239 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 239 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
++++.++|+++.+|+++|.+|..+|++ ++|+..|+++++++|++..+...++.|...+..
T Consensus 60 ~~Al~l~P~~~~a~~~lg~~~~~lg~~----------~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 60 NKAIELDPSLAKAYLRKGTACMKLEEY----------QTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 999999999999999999999999998776643
No 68
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.34 E-value=1.7e-10 Score=110.80 Aligned_cols=211 Identities=12% Similarity=0.081 Sum_probs=163.6
Q ss_pred CCCChhhhhhcHHHHHHHHHHhhccch-------------------------hhhHhhccHHHHHHHHHHHHHhCCCCHH
Q 010976 103 QGNTPHQLAEQNNAAMELINSVTGVDE-------------------------EGRSRQRILTFAAKRYANAIERNPEDYD 157 (496)
Q Consensus 103 ~~~~~~~~~~~~~~A~~~~~~~l~~~~-------------------------~~~~~~g~~~~Ai~~~~~al~~~P~~~~ 157 (496)
.++..+...|+++.|..-|..++.... ..++..|++..||.+....|++.|-++.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 445556678888888888888887651 1123348999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976 158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 237 (496)
Q Consensus 158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~ 237 (496)
.+..++.+|...|+ ...||..++.+-++..++.+.+|.++.+++. .|+...++ ..
T Consensus 191 l~~~Rakc~i~~~e--------------~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~----vgd~~~sL-------~~ 245 (504)
T KOG0624|consen 191 LRQARAKCYIAEGE--------------PKKAIHDLKQASKLSQDNTEGHYKISQLLYT----VGDAENSL-------KE 245 (504)
T ss_pred HHHHHHHHHHhcCc--------------HHHHHHHHHHHHhccccchHHHHHHHHHHHh----hhhHHHHH-------HH
Confidence 99999999999999 9999999999999999999999999999988 88888888 67
Q ss_pred HHHHHhcCCCCHHHHHHHH------------HHHHHccCcchH----------------------------HHhhhhHHH
Q 010976 238 YEKAVQLNWNSPQALNNWG------------LALQELSAIVPA----------------------------REKQTIVRT 277 (496)
Q Consensus 238 ~~~Al~l~P~~~~a~~~lg------------~~l~~~g~~~~A----------------------------~~~~~~~~~ 277 (496)
.+.+|.+||++-.++-..- .-..+.++|-++ ....+++.+
T Consensus 246 iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 246 IRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 7777777777544432111 111222222222 124577799
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhc
Q 010976 278 AISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 357 (496)
Q Consensus 278 Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~ 357 (496)
||+.+.++|.++|++..++...+.+|..-.. |+.|+..|++|.++++++...+..+...++
T Consensus 326 AiqqC~evL~~d~~dv~~l~dRAeA~l~dE~-------------------YD~AI~dye~A~e~n~sn~~~reGle~Akr 386 (504)
T KOG0624|consen 326 AIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM-------------------YDDAIHDYEKALELNESNTRAREGLERAKR 386 (504)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhhHH-------------------HHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 9999999999999999999999998876555 999999999999999999877666655443
No 69
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.34 E-value=4.8e-11 Score=114.23 Aligned_cols=150 Identities=20% Similarity=0.147 Sum_probs=125.6
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHH
Q 010976 151 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEA 227 (496)
Q Consensus 151 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~~~~~~~~~g~~~eA 227 (496)
.++..++.++.+|..+...|+ +++|+..|++++..+|+++ .+++.+|.++.. .|++++|
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A 89 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGD--------------YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEA 89 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHH
Confidence 445678999999999999999 9999999999999999876 688999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHH--------
Q 010976 228 EELWKQATKNYEKAVQLNWNSPQ---ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI-------- 296 (496)
Q Consensus 228 ~~~~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~-------- 296 (496)
+ ..|+++++.+|+++. +++.+|.++..... .+....|++++|+..|++++..+|++..++
T Consensus 90 ~-------~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~ 160 (235)
T TIGR03302 90 I-------AAADRFIRLHPNHPDADYAYYLRGLSNYNQID--RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY 160 (235)
T ss_pred H-------HHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 9 899999999998776 79999999987611 112233445999999999999999986543
Q ss_pred ---------HHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 297 ---------YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 297 ---------~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
..+|.+|+..|+ +..|...|++++...|+.+
T Consensus 161 ~~~~~~~~~~~~a~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 161 LRNRLAGKELYVARFYLKRGA-------------------YVAAINRFETVVENYPDTP 200 (235)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-------------------hHHHHHHHHHHHHHCCCCc
Confidence 356677777777 8899999999999887754
No 70
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=3.4e-10 Score=104.93 Aligned_cols=168 Identities=16% Similarity=0.075 Sum_probs=146.8
Q ss_pred hhhcHHHHHHHHHHhhccch----------hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 010976 110 LAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 179 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~~----------~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 179 (496)
..++.+.|..+++....... .-+-..|.+++|+++|+..++-+|.+..++...-.+...+|+
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK-------- 135 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK-------- 135 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC--------
Confidence 45777788888877665552 223346999999999999999999999999988888899999
Q ss_pred cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976 180 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 259 (496)
Q Consensus 180 ~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 259 (496)
--+||+.+..-++..+++.++|..++.+|.. .|+|.+|. -||++.+-++|.++..+..+|.++
T Consensus 136 ------~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~-------fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 136 ------NLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAA-------FCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred ------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7899999999999999999999999999999 88888887 899999999999999999999999
Q ss_pred HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309 (496)
Q Consensus 260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~ 309 (496)
+-+|.. .++.-|..+|.++++++|.+..+++.+-.+...+.+.
T Consensus 199 Yt~gg~-------eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 199 YTQGGA-------ENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred HHHhhH-------HHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 988875 6778999999999999999999999887777666643
No 71
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.9e-10 Score=123.36 Aligned_cols=225 Identities=16% Similarity=0.108 Sum_probs=156.4
Q ss_pred ChhhhhhcHHHHHHHHHHhhccc--------------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 106 TPHQLAEQNNAAMELINSVTGVD--------------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALV 165 (496)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~l~~~--------------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~ 165 (496)
..+...|.+..|...+.++++.. +.++-..++++.|...|...++.+|.+.+++..+|..
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~m 539 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCM 539 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHH
Confidence 33446788888888888888772 1122334788888899999999999999999999977
Q ss_pred HHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------------------------
Q 010976 166 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR---------------------------- 217 (496)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~---------------------------- 217 (496)
....+. ..+|...+..++..+..++.++..+|.+|...
T Consensus 540 a~~k~~--------------~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 540 ARDKNN--------------LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred HHhccC--------------cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 777888 99999999999999999999999888777663
Q ss_pred ---------HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976 218 ---------AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 218 ---------~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l 288 (496)
+....+...+...+.+|+..|.++|..+|.|..+-+.+|.++...|++ .+|+..|.++.+-
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~----------~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRF----------SEARDIFSQVREA 675 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCc----------hHHHHHHHHHHHH
Confidence 001112244556678899999999999999999999999999999999 5555555555444
Q ss_pred cCCCHHHHHHHHHHHHHcchhHHhccCCCC-----CCCCCc------------HHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 010976 289 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVN-----PREVSP------------NELYSQSAIYIAAAHALKPSYSVYSSA 351 (496)
Q Consensus 289 ~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~-----~~~~~~------------~~~~~~A~~~~~~a~~l~p~~~~y~~a 351 (496)
--++..+|.|+|.||..+|+...+..-.-. ....++ ...|.++..+...|..+.|.++.....
T Consensus 676 ~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 676 TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 444445555555555555543322211000 000000 012677778888888888887754444
Q ss_pred HHh
Q 010976 352 LRL 354 (496)
Q Consensus 352 l~~ 354 (496)
+.+
T Consensus 756 ~a~ 758 (1018)
T KOG2002|consen 756 LAL 758 (1018)
T ss_pred HHH
Confidence 433
No 72
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.33 E-value=2.8e-10 Score=117.74 Aligned_cols=185 Identities=13% Similarity=0.054 Sum_probs=154.6
Q ss_pred hhhhcHHHHHHHHHHhhccch-----------hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976 109 QLAEQNNAAMELINSVTGVDE-----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 177 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~~-----------~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~ 177 (496)
.+.|+++.|..++.++..... ..+...|++++|+..++++++.+|+++.++..++.+|...|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd------ 202 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA------ 202 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh------
Confidence 567889999999988877542 233457999999999999999999999999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHh------------------------------------------CCCCHHHHHHHHHHHH
Q 010976 178 TSPSKDALLEEACKKYDEATRL------------------------------------------CPTLHDAFYNWAIAIS 215 (496)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~Al~l------------------------------------------~P~~~~a~~~lg~~~~ 215 (496)
+++|++.+.+..+. .|+++.++..++..+.
T Consensus 203 --------w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~ 274 (398)
T PRK10747 203 --------WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI 274 (398)
T ss_pred --------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH
Confidence 77777555554432 3446666677777777
Q ss_pred HHHHHcCCHHHHHHHHH------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHh
Q 010976 216 DRAKMRGRTKEAEELWK------------------------QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 271 (496)
Q Consensus 216 ~~~~~~g~~~eA~~~~~------------------------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~ 271 (496)
. .|+.++|.+.++ ++++.+++.++.+|+++..+..+|.++...+++
T Consensus 275 ~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~------ 344 (398)
T PRK10747 275 E----CDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW------ 344 (398)
T ss_pred H----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH------
Confidence 7 999999987763 477888889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhc
Q 010976 272 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL 341 (496)
Q Consensus 272 ~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 341 (496)
++|..+|++++++.|++.. +..++.++..+|+ ..+|..+|++++.+
T Consensus 345 ----~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~-------------------~~~A~~~~~~~l~~ 390 (398)
T PRK10747 345 ----QEASLAFRAALKQRPDAYD-YAWLADALDRLHK-------------------PEEAAAMRRDGLML 390 (398)
T ss_pred ----HHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC-------------------HHHHHHHHHHHHhh
Confidence 9999999999999999654 6689999999998 67888888888765
No 73
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=2.4e-10 Score=105.88 Aligned_cols=162 Identities=17% Similarity=0.079 Sum_probs=149.6
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
.|+.+-|..++++.-...|+........|..+...|. +++|+++|+..++-||.|..++...-.+.
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~--------------~~~A~e~y~~lL~ddpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN--------------YKEAIEYYESLLEDDPTDTVIRKRKLAIL 130 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc--------------hhhHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 5888999999999999999999999999999999999 99999999999999999999999887778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976 215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 294 (496)
Q Consensus 215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~ 294 (496)
.. +|+..+|+ +.+..-+..-+++.++|..++.+|...|++ ++|.-+|++.+-++|.++.
T Consensus 131 ka----~GK~l~aI-------k~ln~YL~~F~~D~EAW~eLaeiY~~~~~f----------~kA~fClEE~ll~~P~n~l 189 (289)
T KOG3060|consen 131 KA----QGKNLEAI-------KELNEYLDKFMNDQEAWHELAEIYLSEGDF----------EKAAFCLEELLLIQPFNPL 189 (289)
T ss_pred HH----cCCcHHHH-------HHHHHHHHHhcCcHHHHHHHHHHHHhHhHH----------HHHHHHHHHHHHcCCCcHH
Confidence 77 99999999 777888888899999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976 295 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 347 (496)
Q Consensus 295 a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 347 (496)
.+..+|.+++.+|- .+.+..+..||+++++++|.+.+
T Consensus 190 ~f~rlae~~Yt~gg----------------~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 190 YFQRLAEVLYTQGG----------------AENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHHHhChHhHH
Confidence 99999999999984 23378899999999999996553
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=1.8e-10 Score=120.87 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=83.6
Q ss_pred hhhhcHHHHHHHHHHhhccc--------hh-------hh-----------HhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976 109 QLAEQNNAAMELINSVTGVD--------EE-------GR-----------SRQRILTFAAKRYANAIERNPEDYDALYNW 162 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~--------~~-------~~-----------~~~g~~~~Ai~~~~~al~~~P~~~~a~~~l 162 (496)
...+..++++++..+++... +. +| .+.....+++..++++++.+|.|+.+.+.+
T Consensus 405 e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~l 484 (799)
T KOG4162|consen 405 ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYL 484 (799)
T ss_pred hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 45677788888888887733 11 11 122456789999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976 163 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFYNWAIAISDRAKMRGRTKEAEE 229 (496)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~~~~~g~~~eA~~ 229 (496)
+.-|..+++ ++.|....++++++++ +++.+|..|+.++.. .+++.+|+.
T Consensus 485 alq~A~~R~--------------l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----~kr~~~Al~ 534 (799)
T KOG4162|consen 485 ALQYAEQRQ--------------LTSALDYAREALALNRGDSAKAWHLLALVLSA----QKRLKEALD 534 (799)
T ss_pred HHHHHHHHh--------------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----hhhhHHHHH
Confidence 999999999 9999999999999954 578899999999988 888888773
No 75
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.31 E-value=3.9e-11 Score=121.97 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=102.0
Q ss_pred hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976 131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 210 (496)
Q Consensus 131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l 210 (496)
..+..|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+ +++|+..+++++.++|+++.+|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--------------~~eAl~~~~~Al~l~P~~~~a~~~l 76 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--------------FTEAVADANKAIELDPSLAKAYLRK 76 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 35567999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976 211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 263 (496)
Q Consensus 211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 263 (496)
|.+|.. +|++++|+ ..|+++++++|++..++..++.+...+.
T Consensus 77 g~~~~~----lg~~~eA~-------~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 77 GTACMK----LEEYQTAK-------AALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHH----hCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999 99999999 8999999999999999999988876663
No 76
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.30 E-value=3.5e-11 Score=105.30 Aligned_cols=111 Identities=13% Similarity=0.046 Sum_probs=101.1
Q ss_pred HHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhH
Q 010976 197 TRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV 275 (496)
Q Consensus 197 l~l~-P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~ 275 (496)
..+. ++.-+..|.+|..+.. .|++++|. ..|+-...++|.+...|++||.++..+|++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~----~G~l~~A~-------~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~---------- 85 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLME----VKEFAGAA-------RLFQLLTIYDAWSFDYWFRLGECCQAQKHW---------- 85 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------
Confidence 3456 7788899999999999 99999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976 276 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 347 (496)
Q Consensus 276 ~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 347 (496)
.+|+..|.+|+.++|+++.+++|+|.|++..|+ ...|..+|+.++..-...+.
T Consensus 86 ~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~-------------------~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 86 GEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN-------------------VCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHhccChh
Confidence 999999999999999999999999999999999 67888888888887644443
No 77
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.30 E-value=1.2e-10 Score=129.02 Aligned_cols=159 Identities=9% Similarity=0.039 Sum_probs=108.5
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
+++|+++.|+..|+++++.+|+++.+.+.+..++...|+ +++|+.++++++.-.|.....+..+|.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~--------------~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR--------------DQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC--------------cHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 456777778888888887777775444477777777777 777777777777333334444444466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
++.. +|++++|+ +.|+++++.+|+++.++..++.++...++. ++|+..+++++..+|.+
T Consensus 111 ly~~----~gdyd~Ai-------ely~kaL~~dP~n~~~l~gLa~~y~~~~q~----------~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 111 AYRN----EKRWDQAL-------ALWQSSLKKDPTNPDLISGMIMTQADAGRG----------GVVLKQATELAERDPTV 169 (822)
T ss_pred HHHH----cCCHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHHhhcCCH----------HHHHHHHHHhcccCcch
Confidence 7777 77777777 777777777777777777777777777777 77777777777777774
Q ss_pred HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 293 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 293 ~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
... ..++.++...++ +..|+..|+++++.+|++.
T Consensus 170 ~~~-l~layL~~~~~~-------------------~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 170 QNY-MTLSYLNRATDR-------------------NYDALQASSEAVRLAPTSE 203 (822)
T ss_pred HHH-HHHHHHHHhcch-------------------HHHHHHHHHHHHHhCCCCH
Confidence 443 333333333333 4457777777777777766
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.29 E-value=1.5e-10 Score=117.66 Aligned_cols=162 Identities=14% Similarity=0.054 Sum_probs=135.1
Q ss_pred hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976 131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 210 (496)
Q Consensus 131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l 210 (496)
.....|++++|+..++++++.+|++..++.. +..+...++. .+....+.+.+......+|....++..+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDF----------SGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccc----------ccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 3456799999999999999999999988887 7777776651 0114444444444446678888888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976 211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 290 (496)
Q Consensus 211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P 290 (496)
|.++.. +|++++|+ ..++++++++|+++.++..+|.++...|++ ++|+..+++++...|
T Consensus 121 a~~~~~----~G~~~~A~-------~~~~~al~~~p~~~~~~~~la~i~~~~g~~----------~eA~~~l~~~l~~~~ 179 (355)
T cd05804 121 AFGLEE----AGQYDRAE-------EAARRALELNPDDAWAVHAVAHVLEMQGRF----------KEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHH----cCCHHHHH-------HHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHhhhhccC
Confidence 999999 99999999 899999999999999999999999999999 999999999999987
Q ss_pred CCH----HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976 291 DFH----RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 343 (496)
Q Consensus 291 ~~~----~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 343 (496)
..+ ..+..++.++...|+ +.+|..+|++++...|
T Consensus 180 ~~~~~~~~~~~~la~~~~~~G~-------------------~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 180 CSSMLRGHNWWHLALFYLERGD-------------------YEAALAIYDTHIAPSA 217 (355)
T ss_pred CCcchhHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHhcccc
Confidence 443 346689999999999 8899999999877666
No 79
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.29 E-value=1e-10 Score=103.68 Aligned_cols=115 Identities=31% Similarity=0.425 Sum_probs=91.5
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010976 137 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 216 (496)
Q Consensus 137 ~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~ 216 (496)
-|+.|.+.++.....||.++++++++|.++..+.+... .......+++|+.-|++||.++|+..+++++||++|..
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~----g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQ----GPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccC----cchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999876100 01223568999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010976 217 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 255 (496)
Q Consensus 217 ~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~l 255 (496)
++++..+..+|.++|++|..+|++|+..+|+|......|
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 999999999999999999999999999999987654444
No 80
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.27 E-value=9.5e-10 Score=114.26 Aligned_cols=199 Identities=16% Similarity=0.048 Sum_probs=152.1
Q ss_pred hhhhhcHHHHHHHHHHhhccch-----------hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC---
Q 010976 108 HQLAEQNNAAMELINSVTGVDE-----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV--- 173 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~l~~~~-----------~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~--- 173 (496)
....|+++.|..++.++..... ..+...|+++.|...+++.++.+|+++.++..++.++...|+..
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 3567899999999988755431 22334699999999999999999999999999999999999831
Q ss_pred ------C-C---CCCCc------chhhhH-----HHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHcCCHHHHH
Q 010976 174 ------S-L---DSTSP------SKDALL-----EEACKKYDEATRLCP----TLHDAFYNWAIAISDRAKMRGRTKEAE 228 (496)
Q Consensus 174 ------~-~---~~~~~------~~~~~~-----~~A~~~~~~Al~l~P----~~~~a~~~lg~~~~~~~~~~g~~~eA~ 228 (496)
. . ++... ...+.+ +++.+.+.++....| ++..++..++..+.. .|++++|+
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~ 283 (409)
T TIGR00540 208 DIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQ 283 (409)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHH
Confidence 0 0 00000 011112 222336666666666 478888888888888 99999998
Q ss_pred HHHHH-----------------------------HHHHHHHHHhcCCCCH--HHHHHHHHHHHHccCcchHHHhhhhHHH
Q 010976 229 ELWKQ-----------------------------ATKNYEKAVQLNWNSP--QALNNWGLALQELSAIVPAREKQTIVRT 277 (496)
Q Consensus 229 ~~~~~-----------------------------A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~g~~~~A~~~~~~~~~ 277 (496)
+.+++ +++.++++++.+|+++ ..+..+|.++.+.|++ ++
T Consensus 284 ~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~----------~~ 353 (409)
T TIGR00540 284 EIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF----------IE 353 (409)
T ss_pred HHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH----------HH
Confidence 76643 5667888889999999 8899999999999999 99
Q ss_pred HHHHHH--HHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHh
Q 010976 278 AISKFR--AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA 340 (496)
Q Consensus 278 Ai~~~~--~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 340 (496)
|..+|+ ++++.+|+... +..+|.++..+|+ ..+|..+|++++.
T Consensus 354 A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~-------------------~~~A~~~~~~~l~ 398 (409)
T TIGR00540 354 AADAFKNVAACKEQLDAND-LAMAADAFDQAGD-------------------KAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC-------------------HHHHHHHHHHHHH
Confidence 999999 68888898665 5599999999998 6677777777654
No 81
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=8.1e-10 Score=109.41 Aligned_cols=195 Identities=15% Similarity=0.084 Sum_probs=159.4
Q ss_pred hcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 010976 112 EQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS 181 (496)
Q Consensus 112 ~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 181 (496)
.++..|..+...++..+ +...+..|++++|.+.|++++..+....++++++|..+..+|+
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~---------- 539 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGN---------- 539 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcC----------
Confidence 34555555555555544 2223456899999999999999998899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976 182 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 261 (496)
Q Consensus 182 ~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 261 (496)
+++|+.+|-+.-.+--+++.+++.++.+|.. +.+..+|+ ++|.++..+-|+++..+..||.+|-+
T Consensus 540 ----ldeald~f~klh~il~nn~evl~qianiye~----led~aqai-------e~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 540 ----LDEALDCFLKLHAILLNNAEVLVQIANIYEL----LEDPAQAI-------ELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred ----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhCHHHHH-------HHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 9999999998888888899999999999988 89998888 78888888899999999999999999
Q ss_pred ccCcchHHH------------------------hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCC
Q 010976 262 LSAIVPARE------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV 317 (496)
Q Consensus 262 ~g~~~~A~~------------------------~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~ 317 (496)
.|+-.+|.+ ...-.++||.+|++|--+.|+...-...++.|+.+.|+
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn--------- 675 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN--------- 675 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc---------
Confidence 888877622 34456889999999988999988888888999999998
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHH
Q 010976 318 NPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 350 (496)
Q Consensus 318 ~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~ 350 (496)
|+.|.+.|+..++.-|.+....+
T Consensus 676 ----------yqka~d~yk~~hrkfpedldclk 698 (840)
T KOG2003|consen 676 ----------YQKAFDLYKDIHRKFPEDLDCLK 698 (840)
T ss_pred ----------HHHHHHHHHHHHHhCccchHHHH
Confidence 88888888888888887764433
No 82
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=3.1e-10 Score=112.33 Aligned_cols=204 Identities=17% Similarity=0.125 Sum_probs=167.3
Q ss_pred hhhhhcHHHHHHHHHHhhccc---------hh--hhHhh--ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Q 010976 108 HQLAEQNNAAMELINSVTGVD---------EE--GRSRQ--RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS 174 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~l~~~---------~~--~~~~~--g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 174 (496)
+...++++.|++.+.-.-..+ +. .++.+ .++..|-.+...++.++--++.++.+.|++-+..|+
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd--- 505 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD--- 505 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc---
Confidence 345678888887765333222 11 12232 589999999999999999999999999999999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976 175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 254 (496)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~ 254 (496)
+++|.+.|+.||.-+.....+++|+|..+.. +|+.++|+ ++|-+.-.+--++.+.++.
T Consensus 506 -----------~dka~~~ykeal~ndasc~ealfniglt~e~----~~~ldeal-------d~f~klh~il~nn~evl~q 563 (840)
T KOG2003|consen 506 -----------LDKAAEFYKEALNNDASCTEALFNIGLTAEA----LGNLDEAL-------DCFLKLHAILLNNAEVLVQ 563 (840)
T ss_pred -----------HHHHHHHHHHHHcCchHHHHHHHHhcccHHH----hcCHHHHH-------HHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999 99999999 6777666666679999999
Q ss_pred HHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCC-----CCC------
Q 010976 255 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR-----EVS------ 323 (496)
Q Consensus 255 lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~-----~~~------ 323 (496)
++.+|..+.+. .+||++|-++..+-|+++.++..||.+|-..|+...+-.....+- .+.
T Consensus 564 ianiye~led~----------aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 564 IANIYELLEDP----------AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHHHHHHhhCH----------HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 99999999999 999999999999999999999999999999997544432221111 111
Q ss_pred ----cHHHHHHHHHHHHHHHhcCCcHH
Q 010976 324 ----PNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 324 ----~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
...++..++.||++|--+.|+..
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 11256889999999999999876
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=7.1e-10 Score=106.02 Aligned_cols=180 Identities=11% Similarity=0.042 Sum_probs=148.9
Q ss_pred ccCCCChhhhhhcHHHHHHHHHHhhccc--------------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 101 ASQGNTPHQLAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVL 166 (496)
Q Consensus 101 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~ 166 (496)
....+..|+..|+.|.|+.+-+..+... ++.+...|-++.|...|...+...-.-..++..|-.+|
T Consensus 72 ~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IY 151 (389)
T COG2956 72 HLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIY 151 (389)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 4456777889999999998877655543 44566679999999999999876666678999999999
Q ss_pred HHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976 167 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 246 (496)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P 246 (496)
....+ +++||+.-++..++.+.... ..++..|.. +.+-..+...+++|+..+.+|++.||
T Consensus 152 Q~tre--------------W~KAId~A~~L~k~~~q~~~--~eIAqfyCE----LAq~~~~~~~~d~A~~~l~kAlqa~~ 211 (389)
T COG2956 152 QATRE--------------WEKAIDVAERLVKLGGQTYR--VEIAQFYCE----LAQQALASSDVDRARELLKKALQADK 211 (389)
T ss_pred HHhhH--------------HHHHHHHHHHHHHcCCccch--hHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHhhCc
Confidence 99999 99999999999999887543 344555555 44444555555666699999999999
Q ss_pred CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcchhH
Q 010976 247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-RAIYNLGTVLYGLAEDT 310 (496)
Q Consensus 247 ~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~-~a~~~lg~~~~~~g~~~ 310 (496)
++..+-..+|.++...|+| +.|++.++.+++.||++. ++...|-.||..+|+..
T Consensus 212 ~cvRAsi~lG~v~~~~g~y----------~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 212 KCVRASIILGRVELAKGDY----------QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred cceehhhhhhHHHHhccch----------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999 999999999999999974 78888999999999844
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.2e-10 Score=114.35 Aligned_cols=164 Identities=16% Similarity=0.143 Sum_probs=135.5
Q ss_pred hhhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHH------------HHHHHHHH
Q 010976 108 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYD------------ALYNWALV 165 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~------------a~~~lg~~ 165 (496)
+-..+.++.|....-.++.++ +.+++...+.+.|+.+|+++|.++|+..+ .|...|+-
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 345677777777666666555 55677789999999999999999998754 34455555
Q ss_pred HHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010976 166 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 241 (496)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~A 241 (496)
.++.|+ |..|.++|..+|.++|++ +..|.|++.+... +|+..+|+ ..+..|
T Consensus 259 ~fk~G~--------------y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r----Lgrl~eai-------sdc~~A 313 (486)
T KOG0550|consen 259 AFKNGN--------------YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR----LGRLREAI-------SDCNEA 313 (486)
T ss_pred Hhhccc--------------hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc----cCCchhhh-------hhhhhh
Confidence 666666 999999999999999985 5679999999999 99999999 899999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976 242 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307 (496)
Q Consensus 242 l~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g 307 (496)
+.+||.+..++...|.|+..++++ ++|++.|++|++...+ ......++.+-..+.
T Consensus 314 l~iD~syikall~ra~c~l~le~~----------e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLALEKW----------EEAVEDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999776 555555555544444
No 85
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.21 E-value=7.7e-10 Score=100.77 Aligned_cols=128 Identities=22% Similarity=0.281 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976 153 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEE 229 (496)
Q Consensus 153 P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~ 229 (496)
+....+++++|.++...|+ +++|+.+|++++.+.|+. ..+++++|.++.. .|++++|+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~- 92 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGE--------------YAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKAL- 92 (172)
T ss_pred hhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHH-
Confidence 4567789999999999999 999999999999987764 5789999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH----HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010976 230 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 305 (496)
Q Consensus 230 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A----~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~ 305 (496)
..|++++..+|++..++.++|.++..+|+...+ ......+++|++++++++.++|++ +...+..+..
T Consensus 93 ------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~ 163 (172)
T PRK02603 93 ------EYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKT 163 (172)
T ss_pred ------HHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHh
Confidence 788999999999999999999999999986444 234566788999999999999987 4556666666
Q ss_pred cch
Q 010976 306 LAE 308 (496)
Q Consensus 306 ~g~ 308 (496)
.|+
T Consensus 164 ~~~ 166 (172)
T PRK02603 164 TGR 166 (172)
T ss_pred cCc
Confidence 654
No 86
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.20 E-value=5.8e-10 Score=101.14 Aligned_cols=130 Identities=22% Similarity=0.199 Sum_probs=106.6
Q ss_pred ccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 010976 136 RILTFAAKRYANAIERNPED--YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNW 210 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---~~~a~~~l 210 (496)
+.+..+...+...++.++.+ ..+++++|.++..+|+ +++|+..|++++.+.|+ .+.+++++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~l~~~~~~~~~~~~~l 78 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE--------------YAEALQNYYEAMRLEIDPYDRSYILYNI 78 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 44555666665555666655 6778999999999999 99999999999999776 34589999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-------cCcchHHHhhhhHHHHHHHHH
Q 010976 211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL-------SAIVPAREKQTIVRTAISKFR 283 (496)
Q Consensus 211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-------g~~~~A~~~~~~~~~Ai~~~~ 283 (496)
|.++.. .|++++|+ ..|++++.++|.+...++++|.++..+ |++ .....++++|+..|+
T Consensus 79 g~~~~~----~g~~~eA~-------~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~---~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 79 GLIHTS----NGEHTKAL-------EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDS---EIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHH----cCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccH---HHHHHHHHHHHHHHH
Confidence 999999 99999999 889999999999999999999999944 454 223455678888888
Q ss_pred HHHHhcCCCH
Q 010976 284 AAIQLQFDFH 293 (496)
Q Consensus 284 ~Al~l~P~~~ 293 (496)
+++..+|++.
T Consensus 145 ~a~~~~p~~~ 154 (168)
T CHL00033 145 QAIALAPGNY 154 (168)
T ss_pred HHHHhCcccH
Confidence 9999998754
No 87
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.16 E-value=1.3e-09 Score=115.40 Aligned_cols=131 Identities=19% Similarity=0.146 Sum_probs=114.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 010976 136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFYNWAIA 213 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 213 (496)
+++.+|+.+|++|++++|+++.+|..++.+|...... . ......+..+....++++.+ +|.++.+|..+|..
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~-~-----~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~ 429 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ-Q-----PLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQ 429 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc-C-----CccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHH
Confidence 5688999999999999999999999999988776441 1 12224577888888888875 78888999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976 214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 293 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~ 293 (496)
+.. .|++++|. ..|++|+.++| +..+|+.+|.++...|++ ++|++.|++|+.++|.++
T Consensus 430 ~~~----~g~~~~A~-------~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~----------~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 430 ALV----KGKTDEAY-------QAINKAIDLEM-SWLNYVLLGKVYELKGDN----------RLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHh----cCCHHHHH-------HHHHHHHHcCC-CHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCc
Confidence 988 99999999 89999999999 589999999999999999 999999999999999987
Q ss_pred H
Q 010976 294 R 294 (496)
Q Consensus 294 ~ 294 (496)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 5
No 88
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.16 E-value=1.1e-09 Score=99.22 Aligned_cols=104 Identities=23% Similarity=0.249 Sum_probs=92.8
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 208 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~ 208 (496)
+..+|++++|+..|++++.+.|+. +.+++++|.++..+|+ +++|+++|++++.++|.+...+.
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------------HTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCcHHHHH
Confidence 445799999999999999997763 4689999999999999 99999999999999999999999
Q ss_pred HHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010976 209 NWAIAISDR---AKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 249 (496)
Q Consensus 209 ~lg~~~~~~---~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~ 249 (496)
++|.++..+ +..+|++++|+..|++|+..|++++..+|.+.
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999821 11289999999999999999999999999765
No 89
>PRK11906 transcriptional regulator; Provisional
Probab=99.15 E-value=2.9e-09 Score=107.85 Aligned_cols=146 Identities=11% Similarity=-0.024 Sum_probs=124.9
Q ss_pred ccHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 136 RILTFAAKRYANAI---ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 136 g~~~~Ai~~~~~al---~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
...+.|+.+|.+|+ .++|+++.+|..++.+++...- .+... ......+|.++.++|++++|.++.++..+|.
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~----~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~ 346 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL----HGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH----hcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45678999999999 9999999999999999988732 11112 4556889999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
++.. .++++.|+ ..|++|+.++|+++.+++..|.++.-.|+. ++|+..+++|++++|.-
T Consensus 347 ~~~~----~~~~~~a~-------~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~----------~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 347 ITGL----SGQAKVSH-------ILFEQAKIHSTDIASLYYYRALVHFHNEKI----------EEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHh----hcchhhHH-------HHHHHHhhcCCccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhccCchh
Confidence 9998 99999999 899999999999999999999999999999 99999999999999987
Q ss_pred HHHHHH-HHH-HHHHcc
Q 010976 293 HRAIYN-LGT-VLYGLA 307 (496)
Q Consensus 293 ~~a~~~-lg~-~~~~~g 307 (496)
..+-.. +-. .|+..+
T Consensus 406 ~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 406 RKAVVIKECVDMYVPNP 422 (458)
T ss_pred hHHHHHHHHHHHHcCCc
Confidence 654333 222 455444
No 90
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.14 E-value=1.9e-09 Score=119.55 Aligned_cols=166 Identities=10% Similarity=-0.012 Sum_probs=141.2
Q ss_pred hhhhhcHHHHHHHHHHhhccchh----------hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976 108 HQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 177 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~l~~~~~----------~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~ 177 (496)
....|+++.|+..+.+++..... .+...|++++|+.++++++.-.|.....+..+|.++..+|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd------ 117 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR------ 117 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC------
Confidence 34678999999999999977733 23456999999999999994445555666666889999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976 178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 257 (496)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 257 (496)
+++|++.|+++++.+|+++.++..++.++.+ .++.++|+ ..+++++..+|.+... ..++.
T Consensus 118 --------yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~----~~q~~eAl-------~~l~~l~~~dp~~~~~-l~lay 177 (822)
T PRK14574 118 --------WDQALALWQSSLKKDPTNPDLISGMIMTQAD----AGRGGVVL-------KQATELAERDPTVQNY-MTLSY 177 (822)
T ss_pred --------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh----cCCHHHHH-------HHHHHhcccCcchHHH-HHHHH
Confidence 9999999999999999999999999999999 99999999 8999999999986554 55566
Q ss_pred HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309 (496)
Q Consensus 258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~ 309 (496)
++...++. .+|+..|+++++.+|++..++..+..++...|-.
T Consensus 178 L~~~~~~~----------~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 178 LNRATDRN----------YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred HHHhcchH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 66666666 7899999999999999999999999999988853
No 91
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.14 E-value=6.7e-09 Score=107.24 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=113.4
Q ss_pred hhhcHHHHHHHHHHhhccchhh---------hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010976 110 LAEQNNAAMELINSVTGVDEEG---------RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP 180 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~~~~---------~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 180 (496)
...+++.|..++.++....+.. ...+++.++|+.+++++|+..|++...|..+|.++.++++
T Consensus 630 en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~--------- 700 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN--------- 700 (913)
T ss_pred ccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH---------
Confidence 4567888889998888766432 2236899999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010976 181 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260 (496)
Q Consensus 181 ~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 260 (496)
.+.|.+.|...++.+|+....|..|+.+-.. .|+.-.|. ..++++.-.||++...|...-.+-.
T Consensus 701 -----ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~rAR-------~ildrarlkNPk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 701 -----IEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLVRAR-------SILDRARLKNPKNALLWLESIRMEL 764 (913)
T ss_pred -----HHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchhhHH-------HHHHHHHhcCCCcchhHHHHHHHHH
Confidence 9999999999999999999999998888877 78888887 7788888888888888877777777
Q ss_pred HccCcchH
Q 010976 261 ELSAIVPA 268 (496)
Q Consensus 261 ~~g~~~~A 268 (496)
+.|+.+.|
T Consensus 765 R~gn~~~a 772 (913)
T KOG0495|consen 765 RAGNKEQA 772 (913)
T ss_pred HcCCHHHH
Confidence 77777544
No 92
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.13 E-value=1.6e-09 Score=91.47 Aligned_cols=107 Identities=24% Similarity=0.297 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976 156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWK 232 (496)
Q Consensus 156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 232 (496)
+++++.+|..+...|+ +++|++.|++++..+|++ ..+++.+|.++.. .|++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~---- 59 (119)
T TIGR02795 2 EEAYYDAALLVLKAGD--------------YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAA---- 59 (119)
T ss_pred cHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHH----
Confidence 4678999999999999 999999999999999886 6789999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976 233 QATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 297 (496)
Q Consensus 233 ~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 297 (496)
..|++++..+|++ +.+++++|.++..+|++ ++|+..|+++++..|++..+..
T Consensus 60 ---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 60 ---KAFLAVVKKYPKSPKAPDALLKLGMSLQELGDK----------EKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred ---HHHHHHHHHCCCCCcccHHHHHHHHHHHHhCCh----------HHHHHHHHHHHHHCcCChhHHH
Confidence 8888888888875 67899999999999999 9999999999999999876543
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=2.6e-09 Score=108.62 Aligned_cols=160 Identities=15% Similarity=-0.002 Sum_probs=134.0
Q ss_pred hhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010976 134 RQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 210 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~l 210 (496)
..|+.+.|...|.++.+..|.+ .+..+..+.++...|+ +++|++.++++++.+|++..++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~--------------~~~A~~~~~~~l~~~P~~~~a~~~- 82 (355)
T cd05804 18 LGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGD--------------LPKALALLEQLLDDYPRDLLALKL- 82 (355)
T ss_pred hcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHH-
Confidence 3577888899999998888755 5678888999999999 999999999999999999988876
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976 211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 290 (496)
Q Consensus 211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P 290 (496)
+..+.. .|++..+..... ..+......+|....++..+|.++...|++ ++|+..++++++++|
T Consensus 83 ~~~~~~----~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~----------~~A~~~~~~al~~~p 145 (355)
T cd05804 83 HLGAFG----LGDFSGMRDHVA---RVLPLWAPENPDYWYLLGMLAFGLEEAGQY----------DRAEEAARRALELNP 145 (355)
T ss_pred hHHHHH----hcccccCchhHH---HHHhccCcCCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCC
Confidence 767766 665555443222 333335567788889999999999999999 999999999999999
Q ss_pred CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976 291 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 344 (496)
Q Consensus 291 ~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 344 (496)
++..++..+|.+++..|+ +.++..++.+++...|.
T Consensus 146 ~~~~~~~~la~i~~~~g~-------------------~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 146 DDAWAVHAVAHVLEMQGR-------------------FKEGIAFMESWRDTWDC 180 (355)
T ss_pred CCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHhhhhccCC
Confidence 999999999999999999 78888888888887763
No 94
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.11 E-value=3.7e-09 Score=112.89 Aligned_cols=133 Identities=21% Similarity=0.156 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 236 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~ 236 (496)
..+...|+.++..|+ +++|+..+.++|+.+|.++.+|+.||.+|.+ +|+..+++ .
T Consensus 140 ~~ll~eAN~lfarg~--------------~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq----rGd~eK~l-------~ 194 (895)
T KOG2076|consen 140 RQLLGEANNLFARGD--------------LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ----RGDIEKAL-------N 194 (895)
T ss_pred HHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCccchhhHHHHHHHHHH----cccHHHHH-------H
Confidence 446667888889999 9999999999999999999999999999999 99999999 7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCC
Q 010976 237 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT 316 (496)
Q Consensus 237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~ 316 (496)
.+-.|-.++|++.+.|..++....++|++ ++|+-+|.+||+.+|.+....++...+|.++|+
T Consensus 195 ~~llAAHL~p~d~e~W~~ladls~~~~~i----------~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~-------- 256 (895)
T KOG2076|consen 195 FWLLAAHLNPKDYELWKRLADLSEQLGNI----------NQARYCYSRAIQANPSNWELIYERSSLYQKTGD-------- 256 (895)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcccH----------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--------
Confidence 88889999999999999999999999999 999999999999999999999999999999998
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976 317 VNPREVSPNELYSQSAIYIAAAHALKP 343 (496)
Q Consensus 317 ~~~~~~~~~~~~~~A~~~~~~a~~l~p 343 (496)
+..|...|.+.+.+.|
T Consensus 257 -----------~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 257 -----------LKRAMETFLQLLQLDP 272 (895)
T ss_pred -----------HHHHHHHHHHHHhhCC
Confidence 7888999999999999
No 95
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.6e-09 Score=103.36 Aligned_cols=188 Identities=10% Similarity=0.039 Sum_probs=157.9
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC--------------------CCCCCcchhhhHHH
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS--------------------LDSTSPSKDALLEE 188 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 188 (496)
+.+++..|++.+|+..|+++..+||....+.-.+|.++...|+.-. .........++++.
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence 5667888999999999999999999999999999999888877310 00112334678999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH
Q 010976 189 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 268 (496)
Q Consensus 189 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A 268 (496)
|+.+-+++|..+|.+..++...|.++.. .|+..+|+ -.|+.|+.+.|.....|-.|-.+|...|++.||
T Consensus 319 AL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~-------IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 319 ALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAV-------IAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred HHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHH-------HHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 9999999999999999999999999999 99999999 899999999999999999999999999999887
Q ss_pred HH--------------------------hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCC
Q 010976 269 RE--------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV 322 (496)
Q Consensus 269 ~~--------------------------~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~ 322 (496)
.- ...--++|...|+++|.++|.+..+...++.++...|+
T Consensus 388 ~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~-------------- 453 (564)
T KOG1174|consen 388 NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP-------------- 453 (564)
T ss_pred HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc--------------
Confidence 11 11233788899999999999999999999999988887
Q ss_pred CcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 323 SPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 323 ~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
+..++..+++.+...|+..
T Consensus 454 -----~~D~i~LLe~~L~~~~D~~ 472 (564)
T KOG1174|consen 454 -----TKDIIKLLEKHLIIFPDVN 472 (564)
T ss_pred -----cchHHHHHHHHHhhccccH
Confidence 5666777777777777655
No 96
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.5e-09 Score=102.47 Aligned_cols=123 Identities=17% Similarity=0.130 Sum_probs=111.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976 136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 215 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~ 215 (496)
...+.-+...+.-+..||+|.+-|..||.+|..+|+ +..|...|.+|+++.|++++.+..+|.++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~--------------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGR--------------ASDALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 346778888999999999999999999999999999 999999999999999999999999999987
Q ss_pred HHHHHcC---CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 216 DRAKMRG---RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 216 ~~~~~~g---~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
. +. ...++. ..+++++.+||++..+++.||..+++.|+| .+|+..++..+...|.+
T Consensus 202 ~----~a~~~~ta~a~-------~ll~~al~~D~~~iral~lLA~~afe~g~~----------~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 202 Y----QAGQQMTAKAR-------ALLRQALALDPANIRALSLLAFAAFEQGDY----------AEAAAAWQMLLDLLPAD 260 (287)
T ss_pred H----hcCCcccHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhcCCCC
Confidence 6 33 234444 899999999999999999999999999999 99999999999998765
Q ss_pred H
Q 010976 293 H 293 (496)
Q Consensus 293 ~ 293 (496)
.
T Consensus 261 ~ 261 (287)
T COG4235 261 D 261 (287)
T ss_pred C
Confidence 4
No 97
>PRK11906 transcriptional regulator; Provisional
Probab=99.10 E-value=7.2e-09 Score=105.02 Aligned_cols=158 Identities=12% Similarity=0.028 Sum_probs=130.7
Q ss_pred HHHhCCCCH---HHH----HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH
Q 010976 148 AIERNPEDY---DAL----YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT---RLCPTLHDAFYNWAIAISDR 217 (496)
Q Consensus 148 al~~~P~~~---~a~----~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al---~l~P~~~~a~~~lg~~~~~~ 217 (496)
+...-|.+. ++| +.+|.-....+. ....+.|..+|.+|+ .++|+++.+|..++.|+..+
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t-----------~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~ 308 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFT-----------PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL 308 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccC-----------HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH
Confidence 344446666 555 566666655544 223788999999999 99999999999999999884
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976 218 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 297 (496)
Q Consensus 218 ~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 297 (496)
+.+.+ .+ -...-.+|....++|++++|.++.++..+|.++...+++ +.|+..|++|+.++|+++.+++
T Consensus 309 ~~~g~-~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~----------~~a~~~f~rA~~L~Pn~A~~~~ 376 (458)
T PRK11906 309 ALHGK-SE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA----------KVSHILFEQAKIHSTDIASLYY 376 (458)
T ss_pred HHhcC-CC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch----------hhHHHHHHHHhhcCCccHHHHH
Confidence 33222 22 233345677999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976 298 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 347 (496)
Q Consensus 298 ~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 347 (496)
..|.++...|+ ..+|...++++++++|-...
T Consensus 377 ~~~~~~~~~G~-------------------~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 377 YRALVHFHNEK-------------------IEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHcCC-------------------HHHHHHHHHHHhccCchhhH
Confidence 99999999999 78999999999999998773
No 98
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.2e-09 Score=101.68 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976 184 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 263 (496)
Q Consensus 184 ~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 263 (496)
...++-+.-++.-++.||+|.+-|..||.+|.. +|++..|. ..|.+|+++.|++++.+..+|.++....
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~-------~AY~~A~rL~g~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDAL-------LAYRNALRLAGDNPEILLGLAEALYYQA 204 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 347888899999999999999999999999999 99999999 8999999999999999999999988766
Q ss_pred CcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976 264 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 343 (496)
Q Consensus 264 ~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 343 (496)
.- .+-.++...|++++++||.+..+.+.||..++..|+ |.+|+..++..+.+.|
T Consensus 205 ~~-------~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~-------------------~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 205 GQ-------QMTAKARALLRQALALDPANIRALSLLAFAAFEQGD-------------------YAEAAAAWQMLLDLLP 258 (287)
T ss_pred CC-------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc-------------------HHHHHHHHHHHHhcCC
Confidence 53 344789999999999999999999999999999999 9999999999999988
Q ss_pred cHHHHH
Q 010976 344 SYSVYS 349 (496)
Q Consensus 344 ~~~~y~ 349 (496)
.+.-..
T Consensus 259 ~~~~rr 264 (287)
T COG4235 259 ADDPRR 264 (287)
T ss_pred CCCchH
Confidence 877333
No 99
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.08 E-value=2e-09 Score=85.18 Aligned_cols=99 Identities=33% Similarity=0.474 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010976 158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 237 (496)
Q Consensus 158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~ 237 (496)
+++++|.++...|+ +++|+..++++++..|++..+++.+|.++.. .|++++|+ ..
T Consensus 2 ~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~~ 56 (100)
T cd00189 2 ALLNLGNLYYKLGD--------------YDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEAL-------ED 56 (100)
T ss_pred HHHHHHHHHHHHhc--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHH-------HH
Confidence 57899999999999 9999999999999999999999999999999 88888888 89
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 238 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 238 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
|++++...|.+..+++.+|.++...|++ ++|+..+.++++..|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 57 YEKALELDPDNAKAYYNLGLAYYKLGKY----------EEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHhCCCcchhHHHHHHHHHHHHHhH----------HHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999 9999999999988774
No 100
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.08 E-value=5.4e-10 Score=85.26 Aligned_cols=68 Identities=32% Similarity=0.508 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 010976 154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWK 232 (496)
Q Consensus 154 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~ 232 (496)
+++.+|+.+|.+++..|+ +++|+.+|+++++++|+++.+++++|.++.. +| ++.+|+
T Consensus 1 e~a~~~~~~g~~~~~~~~--------------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~---- 58 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGD--------------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAI---- 58 (69)
T ss_dssp TSHHHHHHHHHHHHHTTH--------------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHH----
T ss_pred CHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHH----
Confidence 367899999999999999 9999999999999999999999999999999 99 688988
Q ss_pred HHHHHHHHHHhcCC
Q 010976 233 QATKNYEKAVQLNW 246 (496)
Q Consensus 233 ~A~~~~~~Al~l~P 246 (496)
..|+++++++|
T Consensus 59 ---~~~~~al~l~P 69 (69)
T PF13414_consen 59 ---EDFEKALKLDP 69 (69)
T ss_dssp ---HHHHHHHHHST
T ss_pred ---HHHHHHHHcCc
Confidence 88899998887
No 101
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.08 E-value=6e-09 Score=110.39 Aligned_cols=155 Identities=19% Similarity=0.093 Sum_probs=124.1
Q ss_pred HhCCCCHHHHH--HHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 010976 150 ERNPEDYDALY--NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 227 (496)
Q Consensus 150 ~~~P~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA 227 (496)
..-|.+.++|- ..|.-|...++ .+.+.+|+.+|++|++++|+++.+|-.++.+|.. ...+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~-----------~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~----~~~~~~~ 395 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGD-----------AKSLNKASDLLEEILKSEPDFTYAQAEKALADIV----RHSQQPL 395 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHhcCCc
Confidence 34577777764 44555554433 3448899999999999999999999999998876 3222211
Q ss_pred -HHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010976 228 -EELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 304 (496)
Q Consensus 228 -~~~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~ 304 (496)
...+.++....++++.+ +|..+.+|.-+|..+...|++ ++|+..|++|++++| +..+|..+|.++.
T Consensus 396 ~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~----------~~A~~~l~rAl~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 396 DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT----------DEAYQAINKAIDLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 12345566777777774 788889999999999999999 999999999999999 5889999999999
Q ss_pred HcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976 305 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 349 (496)
Q Consensus 305 ~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~ 349 (496)
..|+ +.+|+..|++|+.++|.++.|.
T Consensus 465 ~~G~-------------------~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 465 LKGD-------------------NRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred HcCC-------------------HHHHHHHHHHHHhcCCCCchHH
Confidence 9999 8999999999999999988543
No 102
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.07 E-value=4e-09 Score=96.02 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=96.6
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 208 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~ 208 (496)
+...|++++|+.+|++++++.|+. ..+++++|.++..+|+ +++|+.+|++++.++|++..++.
T Consensus 45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--------------HDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcccHHHHH
Confidence 456799999999999999987764 5789999999999999 99999999999999999999999
Q ss_pred HHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976 209 NWAIAISDR---AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264 (496)
Q Consensus 209 ~lg~~~~~~---~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 264 (496)
++|.++... ....+++++|+..|++|++++++++.++|++ +...+..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 999999871 1113457888888999999999999999987 4445555554444
No 103
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.07 E-value=5.5e-10 Score=85.21 Aligned_cols=68 Identities=32% Similarity=0.447 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CcchHHHhhhhHHHHHH
Q 010976 202 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-AIVPAREKQTIVRTAIS 280 (496)
Q Consensus 202 ~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~~A~~~~~~~~~Ai~ 280 (496)
+++..|+++|.++.. .|++++|+ .+|.++++++|+++.+++++|.++..+| ++ ++|+.
T Consensus 1 e~a~~~~~~g~~~~~----~~~~~~A~-------~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~----------~~A~~ 59 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQ----QGDYEEAI-------EYFEKAIELDPNNAEAYYNLGLAYMKLGKDY----------EEAIE 59 (69)
T ss_dssp TSHHHHHHHHHHHHH----TTHHHHHH-------HHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------HHHHH
T ss_pred CHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------HHHHH
Confidence 367899999999999 99999999 8999999999999999999999999999 78 99999
Q ss_pred HHHHHHHhcC
Q 010976 281 KFRAAIQLQF 290 (496)
Q Consensus 281 ~~~~Al~l~P 290 (496)
.|+++++++|
T Consensus 60 ~~~~al~l~P 69 (69)
T PF13414_consen 60 DFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHcCc
Confidence 9999999998
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=1.3e-09 Score=113.98 Aligned_cols=194 Identities=15% Similarity=0.122 Sum_probs=156.9
Q ss_pred hhhcHHHHHHHHHHhhccc--hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------hcCCCCCC--
Q 010976 110 LAEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQE---------SADNVSLD-- 176 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~--~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~---------~~~~~~~~-- 176 (496)
..|-...|+..+++.-... ..||...|+..+|.....+-++ +|.++..|..+|.+... .+++....
T Consensus 410 slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~ 488 (777)
T KOG1128|consen 410 SLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQ 488 (777)
T ss_pred HcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHH
Confidence 4566667777776655444 3567778999999999999888 78888889888877532 11111111
Q ss_pred ---CCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976 177 ---STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 253 (496)
Q Consensus 177 ---~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~ 253 (496)
+......++|+++.++++..++++|-....||++|.+..+ +++++.|. .+|.+++.++|++.++|+
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av-------~aF~rcvtL~Pd~~eaWn 557 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAV-------KAFHRCVTLEPDNAEAWN 557 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHH-------HHHHHHhhcCCCchhhhh
Confidence 0112335789999999999999999999999999999999 88888888 899999999999999999
Q ss_pred HHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHH
Q 010976 254 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAI 333 (496)
Q Consensus 254 ~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~ 333 (496)
|++.+|..+|+. .+|...+.+|++.+-+++.+|-|.-.+..+.|. ++.|..
T Consensus 558 Nls~ayi~~~~k----------~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge-------------------~eda~~ 608 (777)
T KOG1128|consen 558 NLSTAYIRLKKK----------KRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE-------------------FEDAIK 608 (777)
T ss_pred hhhHHHHHHhhh----------HHHHHHHHHHhhcCCCCCeeeechhhhhhhccc-------------------HHHHHH
Confidence 999999999999 999999999999999999999999999999998 777777
Q ss_pred HHHHHHhcCCc
Q 010976 334 YIAAAHALKPS 344 (496)
Q Consensus 334 ~~~~a~~l~p~ 344 (496)
.|.+.+.+.-.
T Consensus 609 A~~rll~~~~~ 619 (777)
T KOG1128|consen 609 AYHRLLDLRKK 619 (777)
T ss_pred HHHHHHHhhhh
Confidence 77777665443
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.06 E-value=7.2e-09 Score=111.36 Aligned_cols=150 Identities=17% Similarity=0.080 Sum_probs=136.7
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
..+...|...|-++++++|..+.+|..||.+|...-+ ...|.++|++|.++|++++.++-..+..|
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D--------------m~RA~kCf~KAFeLDatdaeaaaa~adty 536 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD--------------MKRAKKCFDKAFELDATDAEAAAASADTY 536 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcCCchhhhhHHHHHHHh
Confidence 4668889999999999999999999999999999988 99999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH-----------------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 215 SDRAKMRGRTKEAEEL-----------------------------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 215 ~~~~~~~g~~~eA~~~-----------------------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
.. ..++++|... +.+|+..|+.|++.+|++..+|..+|.+|...|++
T Consensus 537 ae----~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry 612 (1238)
T KOG1127|consen 537 AE----ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY 612 (1238)
T ss_pred hc----cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce
Confidence 88 8888877643 24588999999999999999999999999999999
Q ss_pred chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHh
Q 010976 266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 312 (496)
Q Consensus 266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a 312 (496)
..|++.|.+|..++|.+..+.|-.+.....+|+...+
T Consensus 613 ----------~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 613 ----------SHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ----------ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999985443
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.05 E-value=2.8e-09 Score=117.21 Aligned_cols=206 Identities=11% Similarity=0.030 Sum_probs=152.0
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCC----CCCCcchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL----DSTSPSKDALLEEACKKYDEATRLCPTLHDAF 207 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~----~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~ 207 (496)
+...+++++|+..++.+++.+|+...+|+.+|.++++.++.-+. -........++ .++++|...+...+++..++
T Consensus 41 ~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al 119 (906)
T PRK14720 41 YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLAL 119 (906)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHH
Confidence 34579999999999999999999999999999999988872000 00012223334 66777777777788888999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH-------------------
Q 010976 208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA------------------- 268 (496)
Q Consensus 208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A------------------- 268 (496)
+.||.||.. +|++++|. ..|+++++++|+|+.+++|+|..|... +.+.|
T Consensus 120 ~~LA~~Ydk----~g~~~ka~-------~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~ 187 (906)
T PRK14720 120 RTLAEAYAK----LNENKKLK-------GVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVG 187 (906)
T ss_pred HHHHHHHHH----cCChHHHH-------HHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchH
Confidence 999999999 99999999 899999999999999999999999999 88887
Q ss_pred ---------------------------------------------HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010976 269 ---------------------------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303 (496)
Q Consensus 269 ---------------------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~ 303 (496)
+...+++++++..++.+|+++|+|..+.+.++.+|
T Consensus 188 ~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 188 IEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 11467888999999999999999999999999998
Q ss_pred HHcchhHHhccCCCCCCCCCc-HHHHHHHHHHHHHHHhcCCcHHHHHH
Q 010976 304 YGLAEDTLRTGGTVNPREVSP-NELYSQSAIYIAAAHALKPSYSVYSS 350 (496)
Q Consensus 304 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~A~~~~~~a~~l~p~~~~y~~ 350 (496)
...-....-....+.-..+.. ...+..++.-|++-+.+++.+-+|.+
T Consensus 268 ~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~ 315 (906)
T PRK14720 268 KEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNFVYHR 315 (906)
T ss_pred HHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence 844321100000000000111 11255666667777777776654443
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.04 E-value=1.9e-08 Score=101.52 Aligned_cols=125 Identities=19% Similarity=0.064 Sum_probs=119.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976 152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 231 (496)
Q Consensus 152 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 231 (496)
+|....++|..+..++..|+ +++|...++..++..|+|+..+...+.++.. .++..+|+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~--------------~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~----~nk~~~A~--- 360 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQ--------------YDEALKLLQPLIAAQPDNPYYLELAGDILLE----ANKAKEAI--- 360 (484)
T ss_pred CccchHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH---
Confidence 37888999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHH
Q 010976 232 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 311 (496)
Q Consensus 232 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 311 (496)
+.+++++.++|+.+..+.++|.+|.+.|++ ++|+..++..+.-+|+++..|..|+.+|..+|+...
T Consensus 361 ----e~~~kal~l~P~~~~l~~~~a~all~~g~~----------~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 361 ----ERLKKALALDPNSPLLQLNLAQALLKGGKP----------QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred ----HHHHHHHhcCCCccHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 899999999999999999999999999999 999999999999999999999999999999998543
No 108
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.03 E-value=6e-09 Score=87.93 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCcchHHHhhhhHHHHHH
Q 010976 204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAIS 280 (496)
Q Consensus 204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~ 280 (496)
++.++.+|..+.. .|++++|+ ..|.+++..+|++ ..+++.+|.++...|++ ++|+.
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~ 60 (119)
T TIGR02795 2 EEAYYDAALLVLK----AGDYADAI-------QAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY----------ADAAK 60 (119)
T ss_pred cHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCccccHHHHHHHHHHHHhhccH----------HHHHH
Confidence 4678999999999 99999999 7888888888876 67999999999999999 99999
Q ss_pred HHHHHHHhcCCC---HHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010976 281 KFRAAIQLQFDF---HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR 353 (496)
Q Consensus 281 ~~~~Al~l~P~~---~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~ 353 (496)
.|++++...|++ +.+++++|.++..+|+ +..|..++.+++...|+......+..
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-------------------~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGD-------------------KEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHHCCCCCcccHHHHHHHHHHHHhCC-------------------hHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 999999998885 6789999999999998 88999999999999999887666543
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.02 E-value=3.8e-09 Score=116.19 Aligned_cols=167 Identities=11% Similarity=0.026 Sum_probs=134.2
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976 150 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 229 (496)
Q Consensus 150 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~ 229 (496)
..+|.+..+|..|...+...++ +++|+..++.+++.+|+...+|+.+|.++.. .+++.++.-
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~--------------~deai~i~~~~l~~~P~~i~~yy~~G~l~~q----~~~~~~~~l 86 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENL--------------TDEAKDICEEHLKEHKKSISALYISGILSLS----RRPLNDSNL 86 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCcceehHHHHHHHHHh----hcchhhhhh
Confidence 4579999999999999999999 9999999999999999999999999999998 888877762
Q ss_pred H-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010976 230 L-----------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 298 (496)
Q Consensus 230 ~-----------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~ 298 (496)
. | .++++|...+...+++-.+++.||.||-++|+. ++|...|+++|+++|+|+.+++|
T Consensus 87 v~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~----------~ka~~~yer~L~~D~~n~~aLNn 155 (906)
T PRK14720 87 LNLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNEN----------KKLKGVWERLVKADRDNPEIVKK 155 (906)
T ss_pred hhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCcccHHHHHH
Confidence 2 2 466777777777888889999999999999999 99999999999999999999999
Q ss_pred HHHHHHHcchhHHhccCCCCCCCCCc-HHHHHHHHHHHHHHHhcCCcHH
Q 010976 299 LGTVLYGLAEDTLRTGGTVNPREVSP-NELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 299 lg~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
+|..|... +...+..-...+..... ...|..+..++.+...++|++-
T Consensus 156 ~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~ 203 (906)
T PRK14720 156 LATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDF 203 (906)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccc
Confidence 99999988 53332211111100000 1135666677777777777765
No 110
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1e-07 Score=91.51 Aligned_cols=192 Identities=12% Similarity=0.049 Sum_probs=154.1
Q ss_pred hhhhhhcHHHHHHHHHHhhccch----------hhhHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcC
Q 010976 107 PHQLAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESAD 171 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~l~~~~----------~~~~~~g~~~~Ai~~~~~al~~~P~~-----~~a~~~lg~~~~~~~~ 171 (496)
.+..+|-+|.|...|........ ..|-...+|.+||+.-++..++.++. +..+..|+..+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 34567888999998888776441 22344589999999999999998875 4557777877777777
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HH
Q 010976 172 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQ 250 (496)
Q Consensus 172 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~-~~ 250 (496)
++.|+..+.+|++.+|+...+-..+|.++.. .|+|..|+ +.++.+++.||.+ ++
T Consensus 196 --------------~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV-------~~~e~v~eQn~~yl~e 250 (389)
T COG2956 196 --------------VDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAV-------EALERVLEQNPEYLSE 250 (389)
T ss_pred --------------HHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHH-------HHHHHHHHhChHHHHH
Confidence 9999999999999999999999999999999 99999999 8999999999986 56
Q ss_pred HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHH
Q 010976 251 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQ 330 (496)
Q Consensus 251 a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 330 (496)
+...|-.+|.++|+. ++.+..++++.+..++........-.+....|. ..
T Consensus 251 vl~~L~~~Y~~lg~~----------~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~--------------------~~ 300 (389)
T COG2956 251 VLEMLYECYAQLGKP----------AEGLNFLRRAMETNTGADAELMLADLIELQEGI--------------------DA 300 (389)
T ss_pred HHHHHHHHHHHhCCH----------HHHHHHHHHHHHccCCccHHHHHHHHHHHhhCh--------------------HH
Confidence 888999999999999 999999999999988755444333344445553 56
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHH
Q 010976 331 SAIYIAAAHALKPSYSVYSSALR 353 (496)
Q Consensus 331 A~~~~~~a~~l~p~~~~y~~al~ 353 (496)
|..++.+-++-+|....+...+.
T Consensus 301 Aq~~l~~Ql~r~Pt~~gf~rl~~ 323 (389)
T COG2956 301 AQAYLTRQLRRKPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHH
Confidence 77777777888887765554443
No 111
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.00 E-value=2.5e-08 Score=103.26 Aligned_cols=209 Identities=10% Similarity=0.016 Sum_probs=130.9
Q ss_pred hhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010976 111 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP 180 (496)
Q Consensus 111 ~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 180 (496)
.++|...+.....++... +..+...|+-++|..+...+++.++.....|..+|.++..-.+
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~--------- 90 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK--------- 90 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh---------
Confidence 455555666665555433 2334556788888888888888888888888888888887777
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010976 181 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260 (496)
Q Consensus 181 ~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 260 (496)
|++|+++|+.|+.+.|+|...|..++....+ +++++-.. ..-.+.+++.|.+-..|...+.++.
T Consensus 91 -----Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q----mRd~~~~~-------~tr~~LLql~~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 91 -----YDEAIKCYRNALKIEKDNLQILRDLSLLQIQ----MRDYEGYL-------ETRNQLLQLRPSQRASWIGFAVAQH 154 (700)
T ss_pred -----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----HHhhhhHH-------HHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 8888888888888888888888888888777 77777766 5666677778888888888888888
Q ss_pred HccCcchHHHhhhhHHHHHHHHHHHHHhc---CCCH-----HHHHHHHHHHHHcchhHHhccCCCC---------CCCCC
Q 010976 261 ELSAIVPAREKQTIVRTAISKFRAAIQLQ---FDFH-----RAIYNLGTVLYGLAEDTLRTGGTVN---------PREVS 323 (496)
Q Consensus 261 ~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~---P~~~-----~a~~~lg~~~~~~g~~~~a~~~~~~---------~~~~~ 323 (496)
..|++ ..|....+.-.+.. |... ........++.+.|....+...... +....
T Consensus 155 L~g~y----------~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 155 LLGEY----------KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHH----------HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 88887 55554444433322 2211 1222222233333321111100000 00001
Q ss_pred cHH------HHHHHHHHHHHHHhcCCcHHHHHHHHHh
Q 010976 324 PNE------LYSQSAIYIAAAHALKPSYSVYSSALRL 354 (496)
Q Consensus 324 ~~~------~~~~A~~~~~~a~~l~p~~~~y~~al~~ 354 (496)
.++ .+.+|...|...+..+|++-.|...+..
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH
Confidence 111 2578888888889999998866555443
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=2.7e-08 Score=100.38 Aligned_cols=109 Identities=20% Similarity=0.116 Sum_probs=104.8
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
++..|++++|...++..++..|+|+..+...+.++...++ ..+|++.+++++.++|+....+.++|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--------------~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--------------AKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3446899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
.+|.. .|++.+|+ ..+...+.-+|+++..|..|+.+|..+|+.
T Consensus 382 ~all~----~g~~~eai-------~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 382 QALLK----GGKPQEAI-------RILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHh----cCChHHHH-------HHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 99999 99999999 899999999999999999999999999999
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.98 E-value=6.3e-09 Score=111.82 Aligned_cols=80 Identities=24% Similarity=0.295 Sum_probs=75.6
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 213 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 213 (496)
..+++..|+..|+.+++.+|.+..+|..+|.+|-..|+ +.-|++.|.+|..++|.+....|..+.+
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr--------------y~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR--------------YSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc--------------eehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 34789999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 010976 214 ISDRAKMRGRTKEAEELW 231 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~~~~ 231 (496)
... .|+|.+|+..+
T Consensus 640 ecd----~GkYkeald~l 653 (1238)
T KOG1127|consen 640 ECD----NGKYKEALDAL 653 (1238)
T ss_pred HHH----hhhHHHHHHHH
Confidence 999 99999998665
No 114
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=8.4e-09 Score=108.57 Aligned_cols=127 Identities=23% Similarity=0.163 Sum_probs=119.9
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
+.+.++.++|..++.++-.++|..+..|+..|.++...|. +++|.+.|..|+.++|++..+...+|
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~--------------~~EA~~af~~Al~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ--------------LEEAKEAFLVALALDPDHVPSMTALA 725 (799)
T ss_pred HHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh--------------hHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 5556888999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976 212 IAISDRAKMRGRTKEAEELWKQATK--NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 289 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A~~--~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~ 289 (496)
.++.. .|+..-|. . .+..++++||.++++|+++|.++..+|+. ++|.++|..|+++.
T Consensus 726 ~~lle----~G~~~la~-------~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~----------~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 726 ELLLE----LGSPRLAE-------KRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS----------KQAAECFQAALQLE 784 (799)
T ss_pred HHHHH----hCCcchHH-------HHHHHHHHHhhCCCCHHHHHHHHHHHHHccch----------HHHHHHHHHHHhhc
Confidence 99999 99877776 5 88999999999999999999999999999 99999999999998
Q ss_pred CCCH
Q 010976 290 FDFH 293 (496)
Q Consensus 290 P~~~ 293 (496)
+.+|
T Consensus 785 ~S~P 788 (799)
T KOG4162|consen 785 ESNP 788 (799)
T ss_pred cCCC
Confidence 8765
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=5e-09 Score=109.72 Aligned_cols=163 Identities=15% Similarity=0.038 Sum_probs=130.3
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 208 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~ 208 (496)
+..+...|-...|+..|++. ..|.....+|...|+ ..+|.....+-++ +|.++..|.
T Consensus 405 aell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~--------------~~kaeei~~q~le-k~~d~~lyc 461 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQ--------------HGKAEEINRQELE-KDPDPRLYC 461 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcc--------------cchHHHHHHHHhc-CCCcchhHH
Confidence 34456678888999998874 668888899999998 8888888888888 788888888
Q ss_pred HHHHHHHHH-----HHHcCCHHHHH------------HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHh
Q 010976 209 NWAIAISDR-----AKMRGRTKEAE------------ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 271 (496)
Q Consensus 209 ~lg~~~~~~-----~~~~g~~~eA~------------~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~ 271 (496)
.||.+..+- +...+++..|. .+|.++..+++..++++|-....|+++|.+..+++++
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~------ 535 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE------ 535 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh------
Confidence 888775541 11122221111 3456677999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976 272 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 343 (496)
Q Consensus 272 ~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 343 (496)
+.|..+|.+.+.++|++..+|+|+..+|..+++ -.+|-..+..|++.+-
T Consensus 536 ----q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-------------------k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 536 ----QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-------------------KKRAFRKLKEALKCNY 584 (777)
T ss_pred ----HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-------------------hHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999997 3455556666666653
No 116
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.96 E-value=2.1e-08 Score=103.84 Aligned_cols=143 Identities=16% Similarity=0.107 Sum_probs=135.6
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 213 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 213 (496)
..++|.+.++..++.++..|++.+.+...|..+..+|+ -++|....+.++..++.....|.-+|.+
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--------------~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--------------KEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--------------hHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 36889999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976 214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 293 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~ 293 (496)
+.. ..+|++|+ ++|+.|+.++|+|.+.|..++.+..+++++ +.....-.+-+++.|.+.
T Consensus 85 ~R~----dK~Y~eai-------Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~----------~~~~~tr~~LLql~~~~r 143 (700)
T KOG1156|consen 85 QRS----DKKYDEAI-------KCYRNALKIEKDNLQILRDLSLLQIQMRDY----------EGYLETRNQLLQLRPSQR 143 (700)
T ss_pred Hhh----hhhHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHhhhhhH
Confidence 999 88888888 899999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHcchhHH
Q 010976 294 RAIYNLGTVLYGLAEDTL 311 (496)
Q Consensus 294 ~a~~~lg~~~~~~g~~~~ 311 (496)
..|..++..+...|+...
T Consensus 144 a~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998443
No 117
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.4e-08 Score=99.04 Aligned_cols=117 Identities=24% Similarity=0.191 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHHHHHc
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----L-----------HDAFYNWAIAISDRAKMR 221 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~-----------~~a~~~lg~~~~~~~~~~ 221 (496)
.-....|+.|++.|+ |..|+..|++|+..-.. + ..++.|++.||.. +
T Consensus 209 ~~~ke~Gn~~fK~gk--------------~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK----l 270 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGK--------------FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK----L 270 (397)
T ss_pred HHHHHhhhHHHhhch--------------HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh----h
Confidence 335667999999999 99999999999987321 1 2468999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010976 222 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 301 (496)
Q Consensus 222 g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~ 301 (496)
++|.+|+ ..+.++|+++|+|..++|+.|.++..+|++ +.|+..|++|++++|+|..+...|..
T Consensus 271 ~~~~~Ai-------~~c~kvLe~~~~N~KALyRrG~A~l~~~e~----------~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 271 KEYKEAI-------ESCNKVLELDPNNVKALYRRGQALLALGEY----------DLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred hhHHHHH-------HHHHHHHhcCCCchhHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999888 899999999999999999999999999999 99999999999999999999988888
Q ss_pred HHHHcch
Q 010976 302 VLYGLAE 308 (496)
Q Consensus 302 ~~~~~g~ 308 (496)
+-.+..+
T Consensus 334 l~~k~~~ 340 (397)
T KOG0543|consen 334 LKQKIRE 340 (397)
T ss_pred HHHHHHH
Confidence 7666554
No 118
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.96 E-value=1.4e-08 Score=80.21 Aligned_cols=99 Identities=29% Similarity=0.396 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976 206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 285 (496)
Q Consensus 206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A 285 (496)
+++++|.++.. .|++++|+ ..++++++..|.+..+++.+|.++...|++ ++|+..|+++
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~ 60 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEAL-------EYYEKALELDPDNADAYYNLAAAYYKLGKY----------EEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 57889999999 99999999 899999999999999999999999999999 9999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976 286 IQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 344 (496)
Q Consensus 286 l~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 344 (496)
+.+.|.+..++..+|.++...|+ +..+..++.+++...|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 61 LELDPDNAKAYYNLGLAYYKLGK-------------------YEEALEAYEKALELDPN 100 (100)
T ss_pred HhCCCcchhHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHccCCC
Confidence 99999999999999999999998 78888899998887763
No 119
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.8e-08 Score=99.81 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=110.2
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHH
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNPED---------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY 193 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 193 (496)
+..+++.|+|..|+..|++|+..-... ..++.|++.+|.++++ |.+|++.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~--------------~~~Ai~~c 280 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE--------------YKEAIESC 280 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh--------------HHHHHHHH
Confidence 455788999999999999998864321 3478899999999999 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhh
Q 010976 194 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQT 273 (496)
Q Consensus 194 ~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~ 273 (496)
.++|.++|+|..++|..|.++.. +|+++.|+ ..|+++++++|+|-.+...|..+-.+..++
T Consensus 281 ~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~-------~df~ka~k~~P~Nka~~~el~~l~~k~~~~-------- 341 (397)
T KOG0543|consen 281 NKVLELDPNNVKALYRRGQALLA----LGEYDLAR-------DDFQKALKLEPSNKAARAELIKLKQKIREY-------- 341 (397)
T ss_pred HHHHhcCCCchhHHHHHHHHHHh----hccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH--------
Confidence 99999999999999999999999 99999999 899999999999999999999988887776
Q ss_pred hHHHHHHHHHHHHHhc
Q 010976 274 IVRTAISKFRAAIQLQ 289 (496)
Q Consensus 274 ~~~~Ai~~~~~Al~l~ 289 (496)
.+...+.|.+.+..-
T Consensus 342 -~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 342 -EEKEKKMYANMFAKL 356 (397)
T ss_pred -HHHHHHHHHHHhhcc
Confidence 144466777776653
No 120
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.93 E-value=5.7e-08 Score=85.82 Aligned_cols=135 Identities=16% Similarity=0.062 Sum_probs=111.8
Q ss_pred hhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHH
Q 010976 111 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLE 187 (496)
Q Consensus 111 ~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 187 (496)
..+...|-..|..++... ..++...+...++..+..+|+. ..+...+|.+++..|+ ++
T Consensus 5 ~~~~~~a~~~y~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~--------------~~ 65 (145)
T PF09976_consen 5 QQQAEQASALYEQALQAL-----QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD--------------YD 65 (145)
T ss_pred HHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC--------------HH
Confidence 344555666666666443 3688888999999999999998 6778889999999999 99
Q ss_pred HHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976 188 EACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264 (496)
Q Consensus 188 ~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 264 (496)
+|+..|+.++...|+. ..+.++|+.++.. .|++++|+ ..++. +.-.+-.+.++..+|.+|...|+
T Consensus 66 ~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~----~~~~d~Al-------~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 66 EAKAALEKALANAPDPELKPLARLRLARILLQ----QGQYDEAL-------ATLQQ-IPDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHh-ccCcchHHHHHHHHHHHHHHCCC
Confidence 9999999999988664 4588999999999 99999999 55544 34445567788999999999999
Q ss_pred cchHHHhhhhHHHHHHHHHHHH
Q 010976 265 IVPAREKQTIVRTAISKFRAAI 286 (496)
Q Consensus 265 ~~~A~~~~~~~~~Ai~~~~~Al 286 (496)
+ ++|+..|++||
T Consensus 134 ~----------~~A~~~y~~Al 145 (145)
T PF09976_consen 134 Y----------DEARAAYQKAL 145 (145)
T ss_pred H----------HHHHHHHHHhC
Confidence 9 99999999985
No 121
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.87 E-value=3e-07 Score=95.35 Aligned_cols=175 Identities=11% Similarity=-0.002 Sum_probs=130.7
Q ss_pred ChhhhhhcHHHHHHHHHHhhccchhh----------hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCC
Q 010976 106 TPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL 175 (496)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~l~~~~~~----------~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~ 175 (496)
..+...+.++-+...|..++..+..- ....|..+.-...+++++...|.....|...+..++..|+
T Consensus 524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd---- 599 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD---- 599 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC----
Confidence 33455666777777787777766210 1123777788888999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH------------------------
Q 010976 176 DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW------------------------ 231 (496)
Q Consensus 176 ~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~------------------------ 231 (496)
...|...+.+|++.+|++-++|+.--.+.+. ..+++.|...|
T Consensus 600 ----------v~~ar~il~~af~~~pnseeiwlaavKle~e----n~e~eraR~llakar~~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 600 ----------VPAARVILDQAFEANPNSEEIWLAAVKLEFE----NDELERARDLLAKARSISGTERVWMKSANLERYLD 665 (913)
T ss_pred ----------cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc----cccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh
Confidence 9999999999999999998888877666666 67777776554
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 232 --KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 232 --~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
++|+..++++|+..|+++..|..+|.++.++++. +.|...|..-++.-|+.+..|..|+.+--..|.
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i----------e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI----------EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH----------HHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 3366777778888888888888888888888777 666666666666666666666666666655554
No 122
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.87 E-value=1.8e-07 Score=89.81 Aligned_cols=159 Identities=15% Similarity=0.071 Sum_probs=115.6
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHH
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDAL---YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA 206 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~---~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a 206 (496)
...|+|++|+..|++++...|..+.+. +.+|.+|++.++ +++|+..|++.++++|++ ..+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~--------------y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------------LPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCcCCCchHHH
Confidence 346999999999999999999987654 899999999999 999999999999998886 467
Q ss_pred HHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHccCcchH----
Q 010976 207 FYNWAIAISDRAKMRGR-----------TKEAEELWKQATKNYEKAVQLNWNSPQ---ALNNWGLALQELSAIVPA---- 268 (496)
Q Consensus 207 ~~~lg~~~~~~~~~~g~-----------~~eA~~~~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~~A---- 268 (496)
++.+|.++.. +++ .+.-...-.+|+..|++.++..|++.. +...+..+..++.+.+-.
T Consensus 109 ~Y~~g~~~~~----~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 109 LYMRGLTNMA----LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred HHHHHHhhhh----cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988755 331 111112224566899999999998642 222222222222211110
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcchh
Q 010976 269 REKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAED 309 (496)
Q Consensus 269 ~~~~~~~~~Ai~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~~ 309 (496)
+.+.|.+..|+.-++.+++.-|+. .++++.++.+|..+|..
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 223344499999999999988765 57899999999999973
No 123
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.86 E-value=3.8e-07 Score=96.30 Aligned_cols=199 Identities=18% Similarity=0.137 Sum_probs=122.9
Q ss_pred hhhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976 109 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 178 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 178 (496)
...|+++.|++.+....... +..+.++|++++|...|...|..||++..-+..+..++.....
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~------- 87 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ------- 87 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc-------
Confidence 45667777777665433322 4445566777777777777777777777777666666533221
Q ss_pred CcchhhhHHHHHHHHHHHHHhCCCCHHH------------HHHHHHHHHHHHHHcC-------------CHHHHHHHHHH
Q 010976 179 SPSKDALLEEACKKYDEATRLCPTLHDA------------FYNWAIAISDRAKMRG-------------RTKEAEELWKQ 233 (496)
Q Consensus 179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a------------~~~lg~~~~~~~~~~g-------------~~~eA~~~~~~ 233 (496)
......+.-...|++.....|....+ +-.+...|.......| +..++ ....+
T Consensus 88 --~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~-~~i~~ 164 (517)
T PF12569_consen 88 --LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKA-AIIES 164 (517)
T ss_pred --cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHH-HHHHH
Confidence 00011566666777666665542211 1111122211100011 01110 11122
Q ss_pred HHHHHHHHHhcC------------CCC--HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010976 234 ATKNYEKAVQLN------------WNS--PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 299 (496)
Q Consensus 234 A~~~~~~Al~l~------------P~~--~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~l 299 (496)
-+..|...++.+ |.. ..+++.++..|...|++ ++|+.+.++||++.|..++.++..
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~----------~~Al~~Id~aI~htPt~~ely~~K 234 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY----------EKALEYIDKAIEHTPTLVELYMTK 234 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCcHHHHHHH
Confidence 223333333221 111 34678899999999999 999999999999999999999999
Q ss_pred HHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 300 GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 300 g~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
|.+|.+.|+ +..|..+++.|..+|+.+.
T Consensus 235 arilKh~G~-------------------~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 235 ARILKHAGD-------------------LKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHCCC-------------------HHHHHHHHHHHHhCChhhH
Confidence 999999999 8899999999999999887
No 124
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.86 E-value=9.9e-09 Score=77.26 Aligned_cols=65 Identities=25% Similarity=0.324 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976 208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 287 (496)
Q Consensus 208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~ 287 (496)
+.+|..+.. .|++++|+ ..|+++++.+|+++.+++.+|.++..+|++ ++|+..|+++++
T Consensus 1 ~~~a~~~~~----~g~~~~A~-------~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQ----QGDYDEAI-------AAFEQALKQDPDNPEAWYLLGRILYQQGRY----------DEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHH----CTHHHHHH-------HHHHHHHCCSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred ChHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 467888999 99999999 899999999999999999999999999999 999999999999
Q ss_pred hcCCCH
Q 010976 288 LQFDFH 293 (496)
Q Consensus 288 l~P~~~ 293 (496)
++|+++
T Consensus 60 ~~P~~p 65 (65)
T PF13432_consen 60 LDPDNP 65 (65)
T ss_dssp HSTT-H
T ss_pred HCcCCC
Confidence 999975
No 125
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.85 E-value=7.3e-09 Score=82.39 Aligned_cols=80 Identities=26% Similarity=0.302 Sum_probs=71.1
Q ss_pred hccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~--~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
+|+++.|+..|+++++.+|. +...++.+|.+|+++|+ +++|+..+++ +..+|.+...++.+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--------------y~~A~~~~~~-~~~~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--------------YEEAIELLQK-LKLDPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--------------HHHHHHHHHC-HTHHHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--------------HHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence 58999999999999999995 56778889999999999 9999999999 8899999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 010976 213 AISDRAKMRGRTKEAEELWKQ 233 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~~~ 233 (496)
++.. +|++++|++.|++
T Consensus 67 ~~~~----l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 67 CLLK----LGKYEEAIKALEK 83 (84)
T ss_dssp HHHH----TT-HHHHHHHHHH
T ss_pred HHHH----hCCHHHHHHHHhc
Confidence 9999 9999999955544
No 126
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.85 E-value=1.1e-08 Score=77.09 Aligned_cols=65 Identities=29% Similarity=0.472 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976 160 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 239 (496)
Q Consensus 160 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~ 239 (496)
+.+|..++..|+ +++|+..|+++++.+|++..+++.+|.++.. +|++++|+ ..|+
T Consensus 1 ~~~a~~~~~~g~--------------~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~-------~~~~ 55 (65)
T PF13432_consen 1 YALARALYQQGD--------------YDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEAL-------AYYE 55 (65)
T ss_dssp HHHHHHHHHCTH--------------HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHH-------HHHH
T ss_pred ChHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 467899999999 9999999999999999999999999999999 99999999 8999
Q ss_pred HHHhcCCCCH
Q 010976 240 KAVQLNWNSP 249 (496)
Q Consensus 240 ~Al~l~P~~~ 249 (496)
++++++|+++
T Consensus 56 ~a~~~~P~~p 65 (65)
T PF13432_consen 56 RALELDPDNP 65 (65)
T ss_dssp HHHHHSTT-H
T ss_pred HHHHHCcCCC
Confidence 9999999875
No 127
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.83 E-value=1.2e-08 Score=100.31 Aligned_cols=187 Identities=18% Similarity=0.132 Sum_probs=130.1
Q ss_pred CCCChhhhhhcHHHHHHHHHHhhcc------c----------hhhhHhhccHHHHHHHHHHHHHhCC------CCHHHHH
Q 010976 103 QGNTPHQLAEQNNAAMELINSVTGV------D----------EEGRSRQRILTFAAKRYANAIERNP------EDYDALY 160 (496)
Q Consensus 103 ~~~~~~~~~~~~~~A~~~~~~~l~~------~----------~~~~~~~g~~~~Ai~~~~~al~~~P------~~~~a~~ 160 (496)
....++...++|++|+++-..-+.+ . +..+...|.|++|+.++.+-+.+.- ....++|
T Consensus 60 QLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlY 139 (639)
T KOG1130|consen 60 QLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALY 139 (639)
T ss_pred HhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHh
Confidence 3455566778888888764432221 1 2234456999999999988876542 2467999
Q ss_pred HHHHHHHHhcCCCCCCCC------CcchhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHHHH
Q 010976 161 NWALVLQESADNVSLDST------SPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAE 228 (496)
Q Consensus 161 ~lg~~~~~~~~~~~~~~~------~~~~~~~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~~~~~g~~~eA~ 228 (496)
|+|++|...|+....... ....-..++.|+++|..-|++-.. .-.++-+||+.|+. +|+|+.|+
T Consensus 140 NlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai 215 (639)
T KOG1130|consen 140 NLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAI 215 (639)
T ss_pred hhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHHHH
Confidence 999999999985332221 233456788999999998887433 33578899999998 99999999
Q ss_pred HHHHHHHH----HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc----C--CCHHHHHH
Q 010976 229 ELWKQATK----NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ----F--DFHRAIYN 298 (496)
Q Consensus 229 ~~~~~A~~----~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~----P--~~~~a~~~ 298 (496)
...++=+. .=.+|- .-.++.|+|.++.-+|++ +.|+++|++++.+. - -.+...|.
T Consensus 216 ~~H~~RL~ia~efGDrAa-----eRRA~sNlgN~hiflg~f----------e~A~ehYK~tl~LAielg~r~vEAQscYS 280 (639)
T KOG1130|consen 216 HFHKLRLEIAQEFGDRAA-----ERRAHSNLGNCHIFLGNF----------ELAIEHYKLTLNLAIELGNRTVEAQSCYS 280 (639)
T ss_pred HHHHHHHHHHHHhhhHHH-----HHHhhcccchhhhhhccc----------HhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 54433222 222221 246899999999999999 88998888876552 2 23456788
Q ss_pred HHHHHHHcch
Q 010976 299 LGTVLYGLAE 308 (496)
Q Consensus 299 lg~~~~~~g~ 308 (496)
||..|.-+.+
T Consensus 281 LgNtytll~e 290 (639)
T KOG1130|consen 281 LGNTYTLLKE 290 (639)
T ss_pred hhhHHHHHHH
Confidence 8888887776
No 128
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.81 E-value=2.4e-07 Score=86.65 Aligned_cols=160 Identities=21% Similarity=0.183 Sum_probs=112.8
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH---H
Q 010976 132 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---D 205 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~---~ 205 (496)
.+..|+|.+|+..|++++...|.. ..+.+.+|.+++..|+ +.+|+..|++.++..|++. .
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~--------------y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD--------------YEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCcchhh
Confidence 445799999999999999998875 6889999999999999 9999999999999999865 6
Q ss_pred HHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCcchH----HHhhhh
Q 010976 206 AFYNWAIAISDRAKMRGRT----KEAEELWKQATKNYEKAVQLNWNSPQA---LNNWGLALQELSAIVPA----REKQTI 274 (496)
Q Consensus 206 a~~~lg~~~~~~~~~~g~~----~eA~~~~~~A~~~~~~Al~l~P~~~~a---~~~lg~~l~~~g~~~~A----~~~~~~ 274 (496)
+++.+|.++.. +.+- +.-.....+|+..|+..+...|++..+ ...+..+-..+.+.+-. +-+.|.
T Consensus 81 A~Y~~g~~~~~----~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 81 ALYMLGLSYYK----QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHHHH----HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHH----hCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 89999999877 3211 222344567779999999999986432 22222222111111100 234444
Q ss_pred HHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcchh
Q 010976 275 VRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAED 309 (496)
Q Consensus 275 ~~~Ai~~~~~Al~l~P~~~---~a~~~lg~~~~~~g~~ 309 (496)
+..|+..|+.+++.-|+.. .++..++.+|..+|..
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 4999999999999999875 6788899999999973
No 129
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.80 E-value=9.9e-09 Score=98.81 Aligned_cols=104 Identities=19% Similarity=0.127 Sum_probs=95.4
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 208 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~ 208 (496)
+..++++|.|++||.||.+++..+|.++..+.|++..|+++.+ |..|...+..|+.++-.+..+|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~--------------FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS--------------FAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH--------------HHHHHHhHHHHHHhhHHHHHHHH
Confidence 5558899999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976 209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 257 (496)
Q Consensus 209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 257 (496)
.+|.+... +|...+|. +.|+.+|++.|++-+..-.++.
T Consensus 170 RR~~AR~~----Lg~~~EAK-------kD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 170 RRMQARES----LGNNMEAK-------KDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred HHHHHHHH----HhhHHHHH-------HhHHHHHhhCcccHHHHHHHHH
Confidence 99999999 99999998 8999999999997766554443
No 130
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.79 E-value=9.2e-09 Score=101.14 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=107.2
Q ss_pred hhHhhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC---
Q 010976 131 GRSRQRILTFAAKRYANAIERN------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP--- 201 (496)
Q Consensus 131 ~~~~~g~~~~Ai~~~~~al~~~------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P--- 201 (496)
+++.+++|.+|+++-..-|.+. -..+.+--|||+++..+|. |++|+.++.+-|.+.-
T Consensus 64 AyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~--------------fdeA~~cc~rhLd~areLg 129 (639)
T KOG1130|consen 64 AYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGA--------------FDEALTCCFRHLDFARELG 129 (639)
T ss_pred hhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcc--------------cchHHHHHHHHhHHHHHHh
Confidence 3445556666655543322221 1123334456666666666 9999999998877632
Q ss_pred ---CCHHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHH
Q 010976 202 ---TLHDAFYNWAIAISDRAKMRGR-------------TKEAEELWKQATKNYEKAVQLNWN------SPQALNNWGLAL 259 (496)
Q Consensus 202 ---~~~~a~~~lg~~~~~~~~~~g~-------------~~eA~~~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l 259 (496)
....++||+|.+|.. .|+ .+++...++.|++.|..-|++.-. ...++.|||..|
T Consensus 130 Drv~e~RAlYNlgnvYha----kGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTy 205 (639)
T KOG1130|consen 130 DRVLESRALYNLGNVYHA----KGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTY 205 (639)
T ss_pred HHHhhhHHHhhhhhhhhh----cccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCcee
Confidence 256899999999988 554 256677889999999988877543 345788899999
Q ss_pred HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcchhH
Q 010976 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDT 310 (496)
Q Consensus 260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~------~~a~~~lg~~~~~~g~~~ 310 (496)
+-+|++ ++||.+-+.-|.+...+ -.++.|||.++.-+|+..
T Consensus 206 YlLGdf----------~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 206 YLLGDF----------DQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred eeeccH----------HHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 999998 99998888877775433 468999999999999743
No 131
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.78 E-value=1.4e-08 Score=80.77 Aligned_cols=80 Identities=26% Similarity=0.295 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976 184 ALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 261 (496)
Q Consensus 184 ~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 261 (496)
++++.|+..|+++++.+|. +...++.+|.+|+. .|++++|+ ..+++ +..++.+...++.+|.++.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~-------~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAI-------ELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHH-------HHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHH-------HHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 4499999999999999995 56778889999999 99999999 77777 88888899999999999999
Q ss_pred ccCcchHHHhhhhHHHHHHHHHHH
Q 010976 262 LSAIVPAREKQTIVRTAISKFRAA 285 (496)
Q Consensus 262 ~g~~~~A~~~~~~~~~Ai~~~~~A 285 (496)
+|++ ++|+.+|+++
T Consensus 71 l~~y----------~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKY----------EEAIKALEKA 84 (84)
T ss_dssp TT-H----------HHHHHHHHHH
T ss_pred hCCH----------HHHHHHHhcC
Confidence 9999 9999999875
No 132
>PRK15331 chaperone protein SicA; Provisional
Probab=98.78 E-value=8.7e-08 Score=84.47 Aligned_cols=111 Identities=15% Similarity=0.004 Sum_probs=100.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 010976 148 AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 227 (496)
Q Consensus 148 al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA 227 (496)
+..+.++..+..|..|.-++..|+ +++|...|+-...++|.+++.++.||.++.. +++|++|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk--------------~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----~k~y~~A 90 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGR--------------LDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----KKQFQKA 90 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----HHHHHHH
Confidence 444566777889999999999999 9999999999999999999999999999988 8888888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976 228 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 294 (496)
Q Consensus 228 ~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~ 294 (496)
+ ..|..|..++++++...+..|.|+..+|+. ..|+.+|..++. .|.+..
T Consensus 91 i-------~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~----------~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 91 C-------DLYAVAFTLLKNDYRPVFFTGQCQLLMRKA----------AKARQCFELVNE-RTEDES 139 (165)
T ss_pred H-------HHHHHHHHcccCCCCccchHHHHHHHhCCH----------HHHHHHHHHHHh-CcchHH
Confidence 7 899999999999999999999999999999 999999999998 455443
No 133
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.78 E-value=2.4e-08 Score=96.23 Aligned_cols=109 Identities=18% Similarity=0.112 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976 159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 238 (496)
Q Consensus 159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~ 238 (496)
+...|+-|+.+|+ |++||.||.+++.++|.++..+.|++.+|+. +.+|..|. ..|
T Consensus 100 iKE~GN~yFKQgK--------------y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE-------~DC 154 (536)
T KOG4648|consen 100 IKERGNTYFKQGK--------------YEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAE-------EDC 154 (536)
T ss_pred HHHhhhhhhhccc--------------hhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHH-------HhH
Confidence 4567888888888 9999999999999999999999999999999 88888888 899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010976 239 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 302 (496)
Q Consensus 239 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~ 302 (496)
..|+.+|-.+..+|...|.+-..+|.. .+|...|+.+|++.|++.+....++.+
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~----------~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNN----------MEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhH----------HHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 999999999999999999999999999 999999999999999987765555544
No 134
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.77 E-value=2.7e-07 Score=89.41 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHH-HHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010976 155 DYDALYNWALVL-QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEEL 230 (496)
Q Consensus 155 ~~~a~~~lg~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~ 230 (496)
+...+|..+..+ +..|+ |++|+..|++.++..|++ +.+++.+|.+|+. .|++++|+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~--------------y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~-- 200 (263)
T PRK10803 141 DANTDYNAAIALVQDKSR--------------QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAA-- 200 (263)
T ss_pred CHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHH--
Confidence 357788888876 55788 999999999999999997 5899999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010976 231 WKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 295 (496)
Q Consensus 231 ~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a 295 (496)
..|++++...|+ .+.+++.+|.++..+|++ ++|+..|+++++..|+...+
T Consensus 201 -----~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~----------~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 201 -----YYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT----------AKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred -----HHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHH
Confidence 788888877776 688999999999999999 99999999999999998754
No 135
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=7.5e-08 Score=86.44 Aligned_cols=107 Identities=23% Similarity=0.267 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976 159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----DAFYNWAIAISDRAKMRGRTKEAEELWKQ 233 (496)
Q Consensus 159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~-----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~ 233 (496)
+..-|+-++..|+ |++|...|..||.++|... ..|.|+|.++.. ++.++.|+
T Consensus 98 lK~EGN~~F~ngd--------------yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI----- 154 (271)
T KOG4234|consen 98 LKKEGNELFKNGD--------------YEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAI----- 154 (271)
T ss_pred HHHHHHHhhhccc--------------HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHH-----
Confidence 3445777888888 9999999999999999854 468889999998 88888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976 234 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 300 (496)
Q Consensus 234 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg 300 (496)
..+.++|+++|.+..++.+++.+|.++.++ ++|+..|.+.++++|....+.-.+.
T Consensus 155 --~dcsKaiel~pty~kAl~RRAeayek~ek~----------eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 155 --EDCSKAIELNPTYEKALERRAEAYEKMEKY----------EEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred --HHHHhhHhcCchhHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHhCcchHHHHHHHH
Confidence 899999999999999999999999999999 9999999999999999765544433
No 136
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.72 E-value=1.9e-07 Score=92.00 Aligned_cols=182 Identities=15% Similarity=0.168 Sum_probs=134.4
Q ss_pred hcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhcCCCCCCCCCcchhhh
Q 010976 112 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP--ED----YDALYNWALVLQESADNVSLDSTSPSKDAL 185 (496)
Q Consensus 112 ~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P--~~----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 185 (496)
.+++.|.++|.++-.. +...+++++|..+|.++....- ++ ..++...+.+|.+. +
T Consensus 29 ~~~e~Aa~~y~~Aa~~----fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~-------------- 89 (282)
T PF14938_consen 29 PDYEEAADLYEKAANC----FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D-------------- 89 (282)
T ss_dssp HHHHHHHHHHHHHHHH----HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T--------------
T ss_pred CCHHHHHHHHHHHHHH----HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C--------------
Confidence 5889999999877643 3456899999999999977642 11 34566667776665 7
Q ss_pred HHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976 186 LEEACKKYDEATRLC--PT----LHDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~--P~----~~~a~~~lg~~~~~~~~~~-g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 258 (496)
+++|+.+|++|+.+. -+ -+.++.++|.+|.. . |++++|++.|++|++.|+.-= ..-....++.++|.+
T Consensus 90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 999999999999982 22 24678999999988 8 999999999999999888632 001135678899999
Q ss_pred HHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHH
Q 010976 259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-------FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQS 331 (496)
Q Consensus 259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~-------~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A 331 (496)
+..+|+| ++|+..|+++....-+ -...+...+.|++..|+ +..|
T Consensus 165 ~~~l~~y----------~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-------------------~v~A 215 (282)
T PF14938_consen 165 YARLGRY----------EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-------------------YVAA 215 (282)
T ss_dssp HHHTT-H----------HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--------------------HHHH
T ss_pred HHHhCCH----------HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-------------------HHHH
Confidence 9999999 9999999999875321 12345677888888887 6788
Q ss_pred HHHHHHHHhcCCcHH
Q 010976 332 AIYIAAAHALKPSYS 346 (496)
Q Consensus 332 ~~~~~~a~~l~p~~~ 346 (496)
...+++....+|.+.
T Consensus 216 ~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 216 RKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHGTTSTTST
T ss_pred HHHHHHHHhhCCCCC
Confidence 888888888888655
No 137
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=5e-07 Score=85.84 Aligned_cols=148 Identities=20% Similarity=0.153 Sum_probs=125.2
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
.+..+|..||+++..-.+.+|.+-..+..||.+|+...+ |..|..+|++.-.+.|......+..+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~--------------f~~AA~CYeQL~ql~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE--------------FALAAECYEQLGQLHPELEQYRLYQAQ 86 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999 999999999999999998888777788
Q ss_pred HHHHHHHHcCCHHHHHHHHH----------------HHHHH-------HHHHHhcCC--CCHHHHHHHHHHHHHccCcch
Q 010976 213 AISDRAKMRGRTKEAEELWK----------------QATKN-------YEKAVQLNW--NSPQALNNWGLALQELSAIVP 267 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~~----------------~A~~~-------~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~~ 267 (496)
.++. .+.+.+|+.... .||.+ .+..++.-| +.+...+|.|.++++.|++
T Consensus 87 SLY~----A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy-- 160 (459)
T KOG4340|consen 87 SLYK----ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY-- 160 (459)
T ss_pred HHHH----hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH--
Confidence 8888 788887775431 12221 122233334 5678899999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 268 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 268 A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
++|++.|+.|++...-++..-||++.+++..++
T Consensus 161 --------EaAvqkFqaAlqvsGyqpllAYniALaHy~~~q 193 (459)
T KOG4340|consen 161 --------EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ 193 (459)
T ss_pred --------HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh
Confidence 999999999999999999999999999999998
No 138
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=2.7e-07 Score=82.93 Aligned_cols=103 Identities=21% Similarity=0.180 Sum_probs=90.6
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNPEDY-----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 203 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~-----~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~ 203 (496)
+..++..|+|.+|..-|..||.+.|..+ ..|.|+|.++.+++. ++.||+.+.+||+++|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k--------------~e~aI~dcsKaiel~pty 167 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK--------------WESAIEDCSKAIELNPTY 167 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh--------------HHHHHHHHHhhHhcCchh
Confidence 3446778999999999999999999764 467899999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976 204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 256 (496)
Q Consensus 204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 256 (496)
..++..++.+|.. +.+|++|+ ..|.+.++.+|...++.-.+.
T Consensus 168 ~kAl~RRAeayek----~ek~eeal-------eDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 168 EKALERRAEAYEK----MEKYEEAL-------EDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHHHHHHHh----hhhHHHHH-------HHHHHHHHhCcchHHHHHHHH
Confidence 9999999999999 88888888 899999999998766554443
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=1.4e-06 Score=76.97 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q 010976 186 LEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLAL 259 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l 259 (496)
...+...+++.+.-+|+. ..+.+.+|.++.. .|++++|+ ..|++++...|+. ..+..+|+.++
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~-------~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAK-------AALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 888988999999999998 5678889999999 99999999 7888888777654 56889999999
Q ss_pred HHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHH
Q 010976 260 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH 339 (496)
Q Consensus 260 ~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~ 339 (496)
...|++ ++|+..++. +.-.+-.+.++..+|.+|...|+ +..|...|++|+
T Consensus 96 ~~~~~~----------d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~-------------------~~~A~~~y~~Al 145 (145)
T PF09976_consen 96 LQQGQY----------DEALATLQQ-IPDEAFKALAAELLGDIYLAQGD-------------------YDEARAAYQKAL 145 (145)
T ss_pred HHcCCH----------HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHhC
Confidence 999999 999999976 34445567788899999999999 788888888764
No 140
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.66 E-value=6.4e-07 Score=99.62 Aligned_cols=64 Identities=9% Similarity=-0.073 Sum_probs=42.1
Q ss_pred hhhhhcHHHHHHHHHHhhccc-------hhhhHhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Q 010976 108 HQLAEQNNAAMELINSVTGVD-------EEGRSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESAD 171 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~g~~~~Ai~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 171 (496)
+...|+.+.|...+......+ ..++.+.|++++|+..|++..+.. .-+...+..+...|...|+
T Consensus 269 y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 446788888888887654433 456677788888888887776543 1234566666666666666
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.65 E-value=7.7e-07 Score=86.27 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCcchHHHhhhhHHHH
Q 010976 203 LHDAFYNWAIAI-SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTA 278 (496)
Q Consensus 203 ~~~a~~~lg~~~-~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~A~~~~~~~~~A 278 (496)
+...+|..+..+ .. .|+|++|+ ..|++.+...|++ +.+++.+|.+|+..|++ ++|
T Consensus 141 ~e~~~Y~~A~~l~~~----~~~y~~Ai-------~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~----------~~A 199 (263)
T PRK10803 141 DANTDYNAAIALVQD----KSRQDDAI-------VAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK----------DDA 199 (263)
T ss_pred CHHHHHHHHHHHHHh----cCCHHHHH-------HHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH----------HHH
Confidence 457778888776 55 78999999 8999999999997 58999999999999999 999
Q ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Q 010976 279 ISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 355 (496)
Q Consensus 279 i~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~ 355 (496)
+..|++++...|+ .+.+++.+|.++..+|+ +..|..+|++.++..|+......+...+
T Consensus 200 ~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~-------------------~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 200 AYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD-------------------TAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 9999999998877 57899999999999998 8899999999999999988776665554
No 142
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.65 E-value=1.3e-07 Score=95.92 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=63.4
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHcCCHHHH
Q 010976 151 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA---FYNWAIAISDRAKMRGRTKEA 227 (496)
Q Consensus 151 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a---~~~lg~~~~~~~~~~g~~~eA 227 (496)
.+|+++++|+++|.+|+.+|+ |++|+.+|++||+++|++..+ |+|+|.+|.. +|++++|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr--------------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEA 131 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR--------------VKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKA 131 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHH
Confidence 479999999999999999999 999999999999999999865 9999999999 9999999
Q ss_pred HHHHHHHHHH
Q 010976 228 EELWKQATKN 237 (496)
Q Consensus 228 ~~~~~~A~~~ 237 (496)
+++|++|++.
T Consensus 132 la~LrrALel 141 (453)
T PLN03098 132 ADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHh
Confidence 9666666654
No 143
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.64 E-value=7e-07 Score=75.69 Aligned_cols=96 Identities=24% Similarity=0.176 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 233 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~ 233 (496)
.+++++|.++..+|+ .++|+.+|++++....+ ...++.++|.+|.. +|++++|+
T Consensus 2 ~~~~~~A~a~d~~G~--------------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~----- 58 (120)
T PF12688_consen 2 RALYELAWAHDSLGR--------------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEAL----- 58 (120)
T ss_pred chHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHH-----
Confidence 578999999999999 99999999999998544 36789999999999 99999999
Q ss_pred HHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976 234 ATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 287 (496)
Q Consensus 234 A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~ 287 (496)
..+++++...|+ +..+...++.++...|++ ++|+..+-.++.
T Consensus 59 --~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~----------~eAl~~~l~~la 103 (120)
T PF12688_consen 59 --ALLEEALEEFPDDELNAALRVFLALALYNLGRP----------KEALEWLLEALA 103 (120)
T ss_pred --HHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHH
Confidence 788888888788 888999999999999999 999998888775
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.62 E-value=4.2e-06 Score=78.31 Aligned_cols=171 Identities=26% Similarity=0.220 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976 155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW 231 (496)
Q Consensus 155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 231 (496)
.+..++..|..++..|+ |.+|++.|++.+...|+. ..+.+.+|.+++. .|++.+|+
T Consensus 4 ~~~~lY~~a~~~~~~g~--------------y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~--- 62 (203)
T PF13525_consen 4 TAEALYQKALEALQQGD--------------YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAI--- 62 (203)
T ss_dssp -HHHHHHHHHHHHHCT---------------HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHH---
T ss_pred CHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHH---
Confidence 46789999999999999 999999999999998874 5789999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCcc-hHHHhhhhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHH
Q 010976 232 KQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIV-PAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLY 304 (496)
Q Consensus 232 ~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~-~A~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~~~lg~~~~ 304 (496)
..|++.+...|++ +.+++.+|.++..+.+-. ......+...+|+..|+..+...|+.. .+...+..+-.
T Consensus 63 ----~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 63 ----AAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp ----HHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 8999999998886 468999999988764320 013355667899999999999999874 23333333322
Q ss_pred HcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Q 010976 305 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 355 (496)
Q Consensus 305 ~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~ 355 (496)
.+.+.....+..-. ....|..|+..+..+++--|+......++.++
T Consensus 139 ~la~~e~~ia~~Y~-----~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 139 RLAEHELYIARFYY-----KRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHHHHHHHHHHHHH-----CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 22221111110000 00017889999999999999888776666553
No 145
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.62 E-value=1.4e-07 Score=95.62 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=66.2
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCcchHHHhhhhH
Q 010976 199 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA---LNNWGLALQELSAIVPAREKQTIV 275 (496)
Q Consensus 199 l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a---~~~lg~~l~~~g~~~~A~~~~~~~ 275 (496)
.+|+++.+|+|+|.+|.. +|++++|+ .+|+++|+++|++..+ |+|+|.+|..+|++
T Consensus 70 ~dP~~a~a~~NLG~AL~~----lGryeEAI-------a~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~---------- 128 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS----KGRVKDAL-------AQFETALELNPNPDEAQAAYYNKACCHAYREEG---------- 128 (453)
T ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------
Confidence 589999999999999999 99999999 8999999999999965 99999999999999
Q ss_pred HHHHHHHHHHHHh
Q 010976 276 RTAISKFRAAIQL 288 (496)
Q Consensus 276 ~~Ai~~~~~Al~l 288 (496)
++|+.+|++|+++
T Consensus 129 dEAla~LrrALel 141 (453)
T PLN03098 129 KKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999998
No 146
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.61 E-value=1.6e-06 Score=72.75 Aligned_cols=110 Identities=23% Similarity=0.164 Sum_probs=89.8
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC----HHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDAF 207 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~----~~a~ 207 (496)
....|+++.|++.|.++|.+.|..+.+|+|++..+.-+|+ .++|+..+++|+++.-.. -.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~--------------~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD--------------DEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC--------------hHHHHHHHHHHHHhcCccchHHHHHH
Confidence 4456999999999999999999999999999999999999 999999999999996543 3578
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHhcCCCCHHHHHHHHHHH
Q 010976 208 YNWAIAISDRAKMRGRTKEAEELWKQATK-----NYEKAVQLNWNSPQALNNWGLAL 259 (496)
Q Consensus 208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~-----~~~~Al~l~P~~~~a~~~lg~~l 259 (496)
..+|.+|.. +|+.+.|...|+.|.. .-++.+.+||.-+.+-..|+.++
T Consensus 119 vQRg~lyRl----~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f 171 (175)
T KOG4555|consen 119 VQRGLLYRL----LGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAF 171 (175)
T ss_pred HHHHHHHHH----hCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 999999999 9999999987777654 23445677775544444455444
No 147
>PRK15331 chaperone protein SicA; Provisional
Probab=98.60 E-value=6.4e-07 Score=79.05 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=97.3
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHH
Q 010976 198 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT 277 (496)
Q Consensus 198 ~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~ 277 (496)
.+.++.-+..|..|.-++. .|++++|. ..|+-..-++|.++..+..||.+++.+++| ++
T Consensus 31 gis~~~le~iY~~Ay~~y~----~Gk~~eA~-------~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y----------~~ 89 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYN----QGRLDEAE-------TFFRFLCIYDFYNPDYTMGLAAVCQLKKQF----------QK 89 (165)
T ss_pred CCCHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHHHHH----------HH
Confidence 3455566778888888888 99999999 889988899999999999999999999999 99
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 278 AISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 278 Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
|+..|-.|..++++++...+..|.|+..+|+ ...|..+|..++. .|.+.
T Consensus 90 Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~-------------------~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 90 ACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK-------------------AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHcccCCCCccchHHHHHHHhCC-------------------HHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999999999999998 6788889998888 46555
No 148
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.60 E-value=1.7e-07 Score=71.06 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=60.6
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
...|++++|+..|++++..+|++.++++.+|.+|...|+ +++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--------------YDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---------------HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 357999999999999999999999999999999999999 999999999999999999888777654
No 149
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.58 E-value=4.4e-07 Score=89.45 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=122.3
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
+...|++++|++.+.+. .+.++....-.+|..+++ ++.|.+.++.+-+.+.+.. ..+++
T Consensus 112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R--------------~dlA~k~l~~~~~~~eD~~--l~qLa 170 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNR--------------PDLAEKELKNMQQIDEDSI--LTQLA 170 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHCCSCCHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCcHH--HHHHH
Confidence 44568999999888764 678888888999999999 9999999999988877644 44444
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976 212 IAISDRAKMRG--RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 289 (496)
Q Consensus 212 ~~~~~~~~~~g--~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~ 289 (496)
.++...+ .| ++.+|. -.|++..+..+.++..++.++.++..+|++ ++|...+.+|+..+
T Consensus 171 ~awv~l~--~g~e~~~~A~-------y~f~El~~~~~~t~~~lng~A~~~l~~~~~----------~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 171 EAWVNLA--TGGEKYQDAF-------YIFEELSDKFGSTPKLLNGLAVCHLQLGHY----------EEAEELLEEALEKD 231 (290)
T ss_dssp HHHHHHH--HTTTCCCHHH-------HHHHHHHCCS--SHHHHHHHHHHHHHCT-H----------HHHHHHHHHHCCC-
T ss_pred HHHHHHH--hCchhHHHHH-------HHHHHHHhccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhc
Confidence 4443321 44 466676 888887777788999999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976 290 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 347 (496)
Q Consensus 290 P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 347 (496)
|+++.++.|+..+...+|+.. ..+..++.+....+|+++.
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~------------------~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPT------------------EAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TC------------------HHHHHHHHHCHHHTTTSHH
T ss_pred cCCHHHHHHHHHHHHHhCCCh------------------hHHHHHHHHHHHhCCCChH
Confidence 999999999999999999721 3455667777777887773
No 150
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.55 E-value=3.6e-05 Score=76.27 Aligned_cols=209 Identities=16% Similarity=0.100 Sum_probs=154.6
Q ss_pred hhhcHHHHHHHHHHhhccc----------hhhhHhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCCCCCC
Q 010976 110 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPED-YDALYNWALVLQESADNVSLDST 178 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~-~~a~~~lg~~~~~~~~~~~~~~~ 178 (496)
..|++..|..++.+.-... .+.-...|+++.|-.+..++-+..+++ ......++.++...|+
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d------- 168 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD------- 168 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC-------
Confidence 3466666666665533322 223334689999999999998884443 4566677888888888
Q ss_pred CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------------------HHH-HHH
Q 010976 179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------------------ATK-NYE 239 (496)
Q Consensus 179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~------------------A~~-~~~ 239 (496)
+..|..-..++++..|.++.++...-.+|.. .|++.+......+ |.. .++
T Consensus 169 -------~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 169 -------YPAARENVDQLLEMTPRHPEVLRLALRAYIR----LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred -------chhHHHHHHHHHHhCcCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 8988887765422 111 111
Q ss_pred HH------------HhcCC----CCHHHHHHHHHHHHHccCcchHHH---------------------hhhhHHHHHHHH
Q 010976 240 KA------------VQLNW----NSPQALNNWGLALQELSAIVPARE---------------------KQTIVRTAISKF 282 (496)
Q Consensus 240 ~A------------l~l~P----~~~~a~~~lg~~l~~~g~~~~A~~---------------------~~~~~~~Ai~~~ 282 (496)
++ .+--| +++.....++.-+..+|.+++|.+ +.++...=++..
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHH
Confidence 11 11112 356677777888889999988722 456667777788
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Q 010976 283 RAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 355 (496)
Q Consensus 283 ~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~ 355 (496)
++.++..|+++..++.||..|++.+. |.+|..+|+.|+++.|+...|...-..+
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~-------------------w~kA~~~leaAl~~~~s~~~~~~la~~~ 371 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKL-------------------WGKASEALEAALKLRPSASDYAELADAL 371 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhH-------------------HHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 88889999999999999999999998 9999999999999999988766554443
No 151
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.55 E-value=2.1e-05 Score=90.16 Aligned_cols=173 Identities=10% Similarity=0.004 Sum_probs=113.0
Q ss_pred hhhhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcC
Q 010976 107 PHQLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIER----NPEDYDALYNWALVLQESAD 171 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~----~P~~~~a~~~lg~~~~~~~~ 171 (496)
.+...|+.++|+.++..+.... -.++.+.|++++|...|.+.... .|+ ...|..+-..|.+.|+
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCC
Confidence 4556788888888887765422 55667778888888888888653 343 5677777778888888
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------
Q 010976 172 NVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ----------------- 233 (496)
Q Consensus 172 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~----------------- 233 (496)
+++|.+.|++..+.+ +.+...|..+...|.. .|++++|++.|++
T Consensus 595 --------------ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI 656 (1060)
T PLN03218 595 --------------VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALV 656 (1060)
T ss_pred --------------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 888888888887775 3466777777777877 8888888844422
Q ss_pred -----------HHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh--cCCCHHHHHHH
Q 010976 234 -----------ATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDFHRAIYNL 299 (496)
Q Consensus 234 -----------A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~l 299 (496)
|.+.+.+..+.. +-+...|+.+..+|.+.|++ ++|+..|++..+. .| +...|+.|
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~----------eeA~~lf~eM~~~g~~P-dvvtyN~L 725 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW----------KKALELYEDIKSIKLRP-TVSTMNAL 725 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHcCCCC-CHHHHHHH
Confidence 223333333322 11344444444444444444 7777777776553 34 35667777
Q ss_pred HHHHHHcchh
Q 010976 300 GTVLYGLAED 309 (496)
Q Consensus 300 g~~~~~~g~~ 309 (496)
...|.+.|+.
T Consensus 726 I~gy~k~G~~ 735 (1060)
T PLN03218 726 ITALCEGNQL 735 (1060)
T ss_pred HHHHHHCCCH
Confidence 7777777763
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.55 E-value=2.6e-06 Score=72.19 Aligned_cols=108 Identities=24% Similarity=0.281 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHH
Q 010976 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISK 281 (496)
Q Consensus 205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~ 281 (496)
.++|++|.++.. +|+.++|+ ..|+++++.... -..++.++|.+|..+|++ ++|+..
T Consensus 2 ~~~~~~A~a~d~----~G~~~~Ai-------~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----------deA~~~ 60 (120)
T PF12688_consen 2 RALYELAWAHDS----LGREEEAI-------PLYRRALAAGLSGADRRRALIQLASTLRNLGRY----------DEALAL 60 (120)
T ss_pred chHHHHHHHHHh----cCCHHHHH-------HHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHH
Confidence 578999999999 99999999 788888876544 367899999999999999 999999
Q ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Q 010976 282 FRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 354 (496)
Q Consensus 282 ~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~ 354 (496)
+++++...|+ +......++.++...|+ +.+|...+-.++. +..+.|++++..
T Consensus 61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr-------------------~~eAl~~~l~~la--~~~~~y~ra~~~ 115 (120)
T PF12688_consen 61 LEEALEEFPDDELNAALRVFLALALYNLGR-------------------PKEALEWLLEALA--ETLPRYRRAIRF 115 (120)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9999999888 88899999999999999 5555555544443 333466666654
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.54 E-value=1e-05 Score=77.76 Aligned_cols=172 Identities=15% Similarity=0.068 Sum_probs=120.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHcCCHHHHHHH
Q 010976 154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA---FYNWAIAISDRAKMRGRTKEAEEL 230 (496)
Q Consensus 154 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a---~~~lg~~~~~~~~~~g~~~eA~~~ 230 (496)
..+..++..|..+...|+ +++|++.|++++...|....+ .+.+|.+|+. .+++++|+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~--------------y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~-- 89 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGN--------------WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQ-- 89 (243)
T ss_pred CCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHH--
Confidence 467788999999999999 999999999999999997655 4999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCc--------chHHHhhhhHHHHHHHHHHHHHhcCCCH---HHH
Q 010976 231 WKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAI--------VPAREKQTIVRTAISKFRAAIQLQFDFH---RAI 296 (496)
Q Consensus 231 ~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~--------~~A~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~ 296 (496)
..|++.++.+|++ +.+++.+|.++..++.- +.....+....+|+..|++.++..|+.. .+.
T Consensus 90 -----~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~ 164 (243)
T PRK10866 90 -----AAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT 164 (243)
T ss_pred -----HHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 8999999998876 56789999887666521 1112234455789999999999999874 344
Q ss_pred HHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Q 010976 297 YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 355 (496)
Q Consensus 297 ~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~ 355 (496)
..+..+...+.+.....+..-. ....|..|+.-++..++--|+.+....+|..+
T Consensus 165 ~rl~~l~~~la~~e~~ia~~Y~-----~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l 218 (243)
T PRK10866 165 KRLVFLKDRLAKYELSVAEYYT-----KRGAYVAVVNRVEQMLRDYPDTQATRDALPLM 218 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HcCchHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 4444444444432211111000 00015666666777777667666555555443
No 154
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.53 E-value=1.2e-05 Score=85.02 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHH
Q 010976 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 284 (496)
Q Consensus 205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~ 284 (496)
.+++.++..|.. .|++++|+ .+.++||+..|..++.|...|.+|-..|++ .+|...++.
T Consensus 195 w~~~~lAqhyd~----~g~~~~Al-------~~Id~aI~htPt~~ely~~KarilKh~G~~----------~~Aa~~~~~ 253 (517)
T PF12569_consen 195 WTLYFLAQHYDY----LGDYEKAL-------EYIDKAIEHTPTLVELYMTKARILKHAGDL----------KEAAEAMDE 253 (517)
T ss_pred HHHHHHHHHHHH----hCCHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHH
Confidence 466888999988 99999999 899999999999999999999999999999 999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcchhHHhcc--CCCCCCCCCcHH---------HHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010976 285 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTG--GTVNPREVSPNE---------LYSQSAIYIAAAHALKPSYSVYSSALR 353 (496)
Q Consensus 285 Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~--~~~~~~~~~~~~---------~~~~A~~~~~~a~~l~p~~~~y~~al~ 353 (496)
|-.+|+.+-.+....+..+.+.|+...+.. ......+.++.. +..+.+..|.+...+..+...|.....
T Consensus 254 Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 254 ARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999998888888888888887654332 111111112221 334555566665555554445554444
Q ss_pred hhh
Q 010976 354 LVR 356 (496)
Q Consensus 354 ~~~ 356 (496)
.+.
T Consensus 334 ~f~ 336 (517)
T PF12569_consen 334 HFD 336 (517)
T ss_pred HHH
Confidence 443
No 155
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.53 E-value=2.5e-05 Score=89.57 Aligned_cols=179 Identities=13% Similarity=0.042 Sum_probs=141.6
Q ss_pred hhhhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCC
Q 010976 107 PHQLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERN--PEDYDALYNWALVLQESADNV 173 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~ 173 (496)
.+...|+.+.|..++..+.... -.++.+.|++++|+..|.+..+.. | +...|..+-..|.+.|+
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~-- 557 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGA-- 557 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCC--
Confidence 4557899999999998877422 567888999999999999987654 4 46789999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCC
Q 010976 174 SLDSTSPSKDALLEEACKKYDEATRL----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNS 248 (496)
Q Consensus 174 ~~~~~~~~~~~~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~ 248 (496)
+++|.+.|++.... .|+ ...|..+-.+|.+ .|++++|. +.|++..+.+ +.+
T Consensus 558 ------------~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k----~G~ldeA~-------elf~~M~e~gi~p~ 613 (1060)
T PLN03218 558 ------------VDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN----AGQVDRAK-------EVYQMIHEYNIKGT 613 (1060)
T ss_pred ------------HHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHcCCCCC
Confidence 99999999999763 454 5788888889999 99999999 5666666665 346
Q ss_pred HHHHHHHHHHHHHccCcchHH-------------------------HhhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHH
Q 010976 249 PQALNNWGLALQELSAIVPAR-------------------------EKQTIVRTAISKFRAAIQLQ-FDFHRAIYNLGTV 302 (496)
Q Consensus 249 ~~a~~~lg~~l~~~g~~~~A~-------------------------~~~~~~~~Ai~~~~~Al~l~-P~~~~a~~~lg~~ 302 (496)
...|+.+...|.+.|++++|. .+.|++++|...|++..+.. +-+...+..|..+
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 777888888888888886661 14567788888888888764 3356788888888
Q ss_pred HHHcchhHHh
Q 010976 303 LYGLAEDTLR 312 (496)
Q Consensus 303 ~~~~g~~~~a 312 (496)
|.+.|+...+
T Consensus 694 y~k~G~~eeA 703 (1060)
T PLN03218 694 CSNAKNWKKA 703 (1060)
T ss_pred HHhCCCHHHH
Confidence 8888875443
No 156
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.53 E-value=5.2e-07 Score=69.39 Aligned_cols=71 Identities=24% Similarity=0.299 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010976 162 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 241 (496)
Q Consensus 162 lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~A 241 (496)
|..+|+..++ +++|++++++++.++|+++..++.+|.++.. +|++.+|+ ..|+++
T Consensus 1 l~~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~-------~~l~~~ 55 (73)
T PF13371_consen 1 LKQIYLQQED--------------YEEALEVLERALELDPDDPELWLQRARCLFQ----LGRYEEAL-------EDLERA 55 (73)
T ss_pred CHHHHHhCCC--------------HHHHHHHHHHHHHhCcccchhhHHHHHHHHH----hccHHHHH-------HHHHHH
Confidence 3567888888 9999999999999999999999999999999 99999999 899999
Q ss_pred HhcCCCCHHHHHHHHH
Q 010976 242 VQLNWNSPQALNNWGL 257 (496)
Q Consensus 242 l~l~P~~~~a~~~lg~ 257 (496)
++.+|++..+....+.
T Consensus 56 l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 56 LELSPDDPDARALRAM 71 (73)
T ss_pred HHHCCCcHHHHHHHHh
Confidence 9999999887765543
No 157
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.53 E-value=9.4e-08 Score=74.69 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHH
Q 010976 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 280 (496)
Q Consensus 201 P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~ 280 (496)
|+...+++++|.+|.. +|++++|+..|++|++.++..-..+|....+++++|.++..+|++ ++|+.
T Consensus 2 ~~~a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~ 67 (78)
T PF13424_consen 2 PDTANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY----------EEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHH
Confidence 4556789999999999 999999999999888884433223344578999999999999999 99999
Q ss_pred HHHHHHHhc
Q 010976 281 KFRAAIQLQ 289 (496)
Q Consensus 281 ~~~~Al~l~ 289 (496)
+|++++++.
T Consensus 68 ~~~~al~i~ 76 (78)
T PF13424_consen 68 YYQKALDIF 76 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999999863
No 158
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=5.6e-06 Score=75.53 Aligned_cols=92 Identities=22% Similarity=0.301 Sum_probs=82.0
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
-..|-+.-|.-.|.+++.++|+-+++++.+|..+...|+ |+.|.+.|...++++|.+--++.|+|+
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~--------------fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhccc--------------chHHHHHhhhHhccCCcchHHHhccce
Confidence 346778889999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010976 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 249 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~ 249 (496)
+++- -|++.-|. +.+.+-.+-||++|
T Consensus 142 ~~YY----~gR~~LAq-------~d~~~fYQ~D~~DP 167 (297)
T COG4785 142 ALYY----GGRYKLAQ-------DDLLAFYQDDPNDP 167 (297)
T ss_pred eeee----cCchHhhH-------HHHHHHHhcCCCCh
Confidence 9999 99999999 45555555566554
No 159
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=6.8e-06 Score=84.78 Aligned_cols=153 Identities=19% Similarity=0.116 Sum_probs=122.0
Q ss_pred hhhcHHHHHHHHHHhhccc---------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 010976 110 LAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP 180 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~---------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 180 (496)
+.++|+.|+.+.+...+.. ..|.++++..++|+..++ ..++.+..++...|.+++++++
T Consensus 58 q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~--------- 125 (652)
T KOG2376|consen 58 QLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER--------- 125 (652)
T ss_pred hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh---------
Confidence 5677888877666554311 456678888888888888 5566677788888888888888
Q ss_pred chhhhHHHHHHHHHHHHHh------------------------------CCC-CHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976 181 SKDALLEEACKKYDEATRL------------------------------CPT-LHDAFYNWAIAISDRAKMRGRTKEAEE 229 (496)
Q Consensus 181 ~~~~~~~~A~~~~~~Al~l------------------------------~P~-~~~a~~~lg~~~~~~~~~~g~~~eA~~ 229 (496)
|++|...|+..++- .|. ..+.+||.+.++.. .|+|.+|++
T Consensus 126 -----ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~----~gky~qA~e 196 (652)
T KOG2376|consen 126 -----YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE----NGKYNQAIE 196 (652)
T ss_pred -----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh----cccHHHHHH
Confidence 88888888876433 233 56678999999999 999999999
Q ss_pred HHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976 230 LWKQATKNYEKAVQLNWNS--------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 293 (496)
Q Consensus 230 ~~~~A~~~~~~Al~l~P~~--------~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~ 293 (496)
.+++|+..+++-+..+-.+ ..+...|+.+++.+|+. ++|...|...++.+|-+.
T Consensus 197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt----------~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT----------AEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHhcCCCc
Confidence 9999999999988776544 33678899999999999 999999999999987654
No 160
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.49 E-value=2.7e-06 Score=86.81 Aligned_cols=113 Identities=18% Similarity=0.090 Sum_probs=104.4
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
.++++.|+..|++..+.+|+ +...++.++...++ -.+|++.+.+++..+|.+...+...+..+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~--------------E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE--------------EVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 47899999999999998875 56778999999998 99999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976 215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 285 (496)
Q Consensus 215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A 285 (496)
.. .++++.|+ ...++++.+.|++...|+.|+.+|..+|++ +.|+..++.+
T Consensus 245 l~----k~~~~lAL-------~iAk~av~lsP~~f~~W~~La~~Yi~~~d~----------e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LS----KKKYELAL-------EIAKKAVELSPSEFETWYQLAECYIQLGDF----------ENALLALNSC 294 (395)
T ss_pred Hh----cCCHHHHH-------HHHHHHHHhCchhHHHHHHHHHHHHhcCCH----------HHHHHHHhcC
Confidence 99 99999999 899999999999999999999999999999 9998777654
No 161
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.49 E-value=3.5e-05 Score=76.36 Aligned_cols=173 Identities=16% Similarity=0.101 Sum_probs=134.8
Q ss_pred hhhhhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCC
Q 010976 107 PHQLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL 175 (496)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~ 175 (496)
+-.+.|+.+.+-.++.++.... .+....+|++..|..-..++++..|.++.++.....+|+..|+
T Consensus 127 AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---- 202 (400)
T COG3071 127 AAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---- 202 (400)
T ss_pred HHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc----
Confidence 3467899999999999888773 2334557999999999999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHh------------------------C--------------C----CCHHHHHHHHHH
Q 010976 176 DSTSPSKDALLEEACKKYDEATRL------------------------C--------------P----TLHDAFYNWAIA 213 (496)
Q Consensus 176 ~~~~~~~~~~~~~A~~~~~~Al~l------------------------~--------------P----~~~~a~~~lg~~ 213 (496)
+.+......+.-+- + | +++.....++.-
T Consensus 203 ----------~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 203 ----------WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred ----------HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 44444333322211 1 1 122333334444
Q ss_pred HHHHHHHcCCHHHHHHHHHH------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHH
Q 010976 214 ISDRAKMRGRTKEAEELWKQ------------------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 269 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~~~~~~------------------------A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~ 269 (496)
+.. +|++++|.+...+ =++..++.+...|+++..+..||.++.+.+.+
T Consensus 273 li~----l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w---- 344 (400)
T COG3071 273 LIR----LGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW---- 344 (400)
T ss_pred HHH----cCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH----
Confidence 444 9999999877644 33577888899999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 270 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 270 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
.+|..+|+.|++..|+ ...+..+|.++..+|+
T Consensus 345 ------~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~ 376 (400)
T COG3071 345 ------GKASEALEAALKLRPS-ASDYAELADALDQLGE 376 (400)
T ss_pred ------HHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC
Confidence 9999999999999887 6778889999999998
No 162
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.49 E-value=7.4e-07 Score=68.50 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976 211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 290 (496)
Q Consensus 211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P 290 (496)
..+|.. .+++++|+ +++++++.++|+++.++..+|.++..+|++ .+|+..|++++++.|
T Consensus 2 ~~~~~~----~~~~~~A~-------~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQ----QEDYEEAL-------EVLERALELDPDDPELWLQRARCLFQLGRY----------EEALEDLERALELSP 60 (73)
T ss_pred HHHHHh----CCCHHHHH-------HHHHHHHHhCcccchhhHHHHHHHHHhccH----------HHHHHHHHHHHHHCC
Confidence 455666 99999999 899999999999999999999999999999 999999999999999
Q ss_pred CCHHHHHHHH
Q 010976 291 DFHRAIYNLG 300 (496)
Q Consensus 291 ~~~~a~~~lg 300 (496)
++..+.....
T Consensus 61 ~~~~~~~~~a 70 (73)
T PF13371_consen 61 DDPDARALRA 70 (73)
T ss_pred CcHHHHHHHH
Confidence 9988766554
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.48 E-value=5e-07 Score=68.42 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976 183 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 257 (496)
Q Consensus 183 ~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 257 (496)
.|++++|+..|++++..+|++..+++.+|.+|.. .|++++|. ..+++++..+|+++.++..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~-------~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAE-------ELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHH-------HHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCcCHHHHHHHHhc
Confidence 3459999999999999999999999999999999 99999999 8999999999999888877665
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.48 E-value=4.6e-05 Score=69.61 Aligned_cols=181 Identities=28% Similarity=0.301 Sum_probs=138.9
Q ss_pred hhhcHHHHHHHHHHhhcc--c----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhcCCCCCC
Q 010976 110 LAEQNNAAMELINSVTGV--D----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWAL-VLQESADNVSLD 176 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~--~----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~-~~~~~~~~~~~~ 176 (496)
..+.+..+...+...... . +......+++..++..+.+++...+.........+. ++...++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 145 (291)
T COG0457 71 KLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGD----- 145 (291)
T ss_pred HcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCC-----
Confidence 445555555555555431 1 222334577888999999999888877666666666 8888888
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHH
Q 010976 177 STSPSKDALLEEACKKYDEATRLCP---TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQAL 252 (496)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~Al~l~P---~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-~~~a~ 252 (496)
++.|+..|.+++..+| .....+..++..+.. .+++.+++ ..+.+++...+. ....+
T Consensus 146 ---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~~~~~~~~~~~~~~~~~~ 205 (291)
T COG0457 146 ---------YEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEAL-------ELLEKALKLNPDDDAEAL 205 (291)
T ss_pred ---------HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHH-------HHHHHHHhhCcccchHHH
Confidence 9999999999988777 355666666666666 78888888 788888888888 68899
Q ss_pred HHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHH
Q 010976 253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA 332 (496)
Q Consensus 253 ~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~ 332 (496)
.+++..+...+++ ..|+..+.+++...|.....+..++..+...+. +..+.
T Consensus 206 ~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 256 (291)
T COG0457 206 LNLGLLYLKLGKY----------EEALEYYEKALELDPDNAEALYNLALLLLELGR-------------------YEEAL 256 (291)
T ss_pred HHhhHHHHHcccH----------HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC-------------------HHHHH
Confidence 9999999999988 999999999999999877788888888875554 67778
Q ss_pred HHHHHHHhcCCc
Q 010976 333 IYIAAAHALKPS 344 (496)
Q Consensus 333 ~~~~~a~~l~p~ 344 (496)
..+.+++...|.
T Consensus 257 ~~~~~~~~~~~~ 268 (291)
T COG0457 257 EALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhCcc
Confidence 888888888886
No 165
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.48 E-value=2.3e-07 Score=72.50 Aligned_cols=70 Identities=27% Similarity=0.363 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHHHHHcCCHH
Q 010976 153 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---C----PTLHDAFYNWAIAISDRAKMRGRTK 225 (496)
Q Consensus 153 P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---~----P~~~~a~~~lg~~~~~~~~~~g~~~ 225 (496)
|+...++.++|.+|..+|+ +++|+.+|++++++ . |..+.+++++|.++.. +|+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~ 63 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGR--------------YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHH
Confidence 4456789999999999999 99999999999987 1 2236789999999999 99999
Q ss_pred HHHHHHHHHHHHHHH
Q 010976 226 EAEELWKQATKNYEK 240 (496)
Q Consensus 226 eA~~~~~~A~~~~~~ 240 (496)
+|++.|++|++.+++
T Consensus 64 ~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 64 EALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcC
Confidence 999888888877764
No 166
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.47 E-value=5.9e-06 Score=69.39 Aligned_cols=100 Identities=32% Similarity=0.350 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976 160 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 239 (496)
Q Consensus 160 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~ 239 (496)
-..|..+.+.|+ ++.|++.|.++|.+.|.++.+|+|++.++.- +|+.++|+ +.+.
T Consensus 47 El~~valaE~g~--------------Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~AL-------dDLn 101 (175)
T KOG4555|consen 47 ELKAIALAEAGD--------------LDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEAL-------DDLN 101 (175)
T ss_pred HHHHHHHHhccc--------------hHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHH-------HHHH
Confidence 345778888999 9999999999999999999999999999999 99999999 7777
Q ss_pred HHHhcCCCC----HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976 240 KAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 294 (496)
Q Consensus 240 ~Al~l~P~~----~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~ 294 (496)
+|+++.-.. -.++...|.+|..+|+- +.|...|+.|.++...++.
T Consensus 102 ~AleLag~~trtacqa~vQRg~lyRl~g~d----------d~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 102 KALELAGDQTRTACQAFVQRGLLYRLLGND----------DAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhCch----------HHHHHhHHHHHHhCCHHHH
Confidence 888776443 45789999999999999 9999999999888766544
No 167
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=5.5e-06 Score=80.58 Aligned_cols=173 Identities=14% Similarity=0.048 Sum_probs=126.9
Q ss_pred hhhcHHHHHHHHHHhhccc-----------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 010976 110 LAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 178 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~-----------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 178 (496)
...++.-|+.+++..+... +.|++.+|+|++|+..|.-+...+--+.+.+.+|+.+++-+|.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~------- 106 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ------- 106 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-------
Confidence 3456667777777666544 4578889999999999999998877788999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------HHHcCCHHH----------HHHHHHHHHHHHHHHH
Q 010976 179 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR------AKMRGRTKE----------AEELWKQATKNYEKAV 242 (496)
Q Consensus 179 ~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~------~~~~g~~~e----------A~~~~~~A~~~~~~Al 242 (496)
|.+|...-.++-+ .|-..+.+++++.-+.+. +..+++..+ ...+|++||+.|.+.+
T Consensus 107 -------Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 107 -------YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred -------HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876665421 111123333333221110 000111111 1244677889999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976 243 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307 (496)
Q Consensus 243 ~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g 307 (496)
.-+|++...-.+++.||.++.-+ +-+.+.+.--|+.-|+.+.+.+.++..++++-
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYy----------dvsqevl~vYL~q~pdStiA~NLkacn~fRl~ 233 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYY----------DVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI 233 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchh----------hhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh
Confidence 99999999999999999999999 99999999999999999999998888877664
No 168
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.42 E-value=3.8e-05 Score=70.16 Aligned_cols=159 Identities=29% Similarity=0.313 Sum_probs=139.2
Q ss_pred hHhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIE--RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 209 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~ 209 (496)
+...+.+..++..+...+. ..+.....+..++..+...+. +..+++.+.+++...+........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 134 (291)
T COG0457 69 LLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK--------------YEEALELLEKALALDPDPDLAEAL 134 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHcCCCCcchHHHH
Confidence 4456889999999999997 788999999999999999999 999999999999998887666666
Q ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976 210 WAI-AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW---NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 285 (496)
Q Consensus 210 lg~-~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P---~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A 285 (496)
.+. ++.. .|+++.|. ..|.+++..+| .....+..++..+...+++ +.|+..+.++
T Consensus 135 ~~~~~~~~----~~~~~~a~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~ 193 (291)
T COG0457 135 LALGALYE----LGDYEEAL-------ELYEKALELDPELNELAEALLALGALLEALGRY----------EEALELLEKA 193 (291)
T ss_pred HHHHHHHH----cCCHHHHH-------HHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH----------HHHHHHHHHH
Confidence 666 7888 99999999 77888777777 4667777788888888888 9999999999
Q ss_pred HHhcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976 286 IQLQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 344 (496)
Q Consensus 286 l~l~P~-~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 344 (496)
+...+. ....+.+++.++...+. +..+..++..++...|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGK-------------------YEEALEYYEKALELDPD 234 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHccc-------------------HHHHHHHHHHHHhhCcc
Confidence 999999 79999999999999996 78888899999998887
No 169
>PLN03077 Protein ECB2; Provisional
Probab=98.41 E-value=2.8e-05 Score=88.64 Aligned_cols=191 Identities=9% Similarity=-0.020 Sum_probs=122.3
Q ss_pred hhhhcHHHHHHHHHHhhccc-------hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---------
Q 010976 109 QLAEQNNAAMELINSVTGVD-------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN--------- 172 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~-------~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~--------- 172 (496)
...|+.+.|...+.+....+ -.++.+.|++++|+..|++.+...+-+...+..+-..+...|..
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 35677788888877765543 24566678888888888888754332333332222222222210
Q ss_pred -----CCCCCC-------CcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------
Q 010976 173 -----VSLDST-------SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------- 233 (496)
Q Consensus 173 -----~~~~~~-------~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~------- 233 (496)
..++.. -+.+.|++++|.+.|+.. +.+...|+.+...|.. .|+.++|++.|++
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~----~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVA----HGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Confidence 000000 011223377887777765 4566778888888888 8888888877643
Q ss_pred ---------------------HHHHHHHHHhc---CCCCHHHHHHHHHHHHHccCcchHHH-------------------
Q 010976 234 ---------------------ATKNYEKAVQL---NWNSPQALNNWGLALQELSAIVPARE------------------- 270 (496)
Q Consensus 234 ---------------------A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~~A~~------------------- 270 (496)
|...|+...+. .| +...|..+..+|.+.|++++|.+
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ 665 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 55666666533 34 45788889999999999877722
Q ss_pred ---hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 271 ---KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 271 ---~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
..++.+.+....++.++++|++...+..|+.+|...|+
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 34666777777778888888888888888888888887
No 170
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1e-06 Score=81.34 Aligned_cols=90 Identities=21% Similarity=0.169 Sum_probs=82.1
Q ss_pred CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976 178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 257 (496)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 257 (496)
+..+...+|..|+.+|.+||.++|..+..|.|.+.+|++ +.+++... ..+++|++++|+...+++.+|.
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~-------~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVE-------EDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhh-------hhHHHHHhcChHHHHHHHHHHH
Confidence 344555569999999999999999999999999999999 77777777 8999999999999999999999
Q ss_pred HHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l 288 (496)
++.....+ ++||..+.+|..+
T Consensus 87 ~~l~s~~~----------~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 87 WLLQSKGY----------DEAIKVLQRAYSL 107 (284)
T ss_pred HHHhhccc----------cHHHHHHHHHHHH
Confidence 99999999 9999999999765
No 171
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=1.2e-06 Score=79.89 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976 156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 235 (496)
Q Consensus 156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~ 235 (496)
+..++.+|..|-.+|- ..-|.-.|.+++.++|+.+++++.||..+.. .|+|+.|.
T Consensus 65 A~l~fERGvlYDSlGL--------------~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~----a~~fdaa~------- 119 (297)
T COG4785 65 AQLLFERGVLYDSLGL--------------RALARNDFSQALAIRPDMPEVFNYLGIYLTQ----AGNFDAAY------- 119 (297)
T ss_pred HHHHHHhcchhhhhhH--------------HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh----cccchHHH-------
Confidence 3456778888888888 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976 236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 294 (496)
Q Consensus 236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~ 294 (496)
+.|...+++||.+-.++.|.|..+..-|++ .-|.+.+.+--+.||++|-
T Consensus 120 eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~----------~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 120 EAFDSVLELDPTYNYAHLNRGIALYYGGRY----------KLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred HHhhhHhccCCcchHHHhccceeeeecCch----------HhhHHHHHHHHhcCCCChH
Confidence 899999999999999999999999999999 8888888888888888874
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.37 E-value=9.4e-07 Score=87.11 Aligned_cols=154 Identities=18% Similarity=0.125 Sum_probs=109.3
Q ss_pred CChhhhhhcHHHHHHHHHHhhccc---------------hhhhHhhccHHHHHHHHHHHHHhCC--C----CHHHHHHHH
Q 010976 105 NTPHQLAEQNNAAMELINSVTGVD---------------EEGRSRQRILTFAAKRYANAIERNP--E----DYDALYNWA 163 (496)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~l~~~---------------~~~~~~~g~~~~Ai~~~~~al~~~P--~----~~~a~~~lg 163 (496)
+..++..+++++|...|.++.... ....++..++++|+.+|++|+.+.- + -+.++..+|
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA 121 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELA 121 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344566677777777776665443 1112345699999999999998742 2 256788999
Q ss_pred HHHHHh-cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976 164 LVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCP--T----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 236 (496)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P--~----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~ 236 (496)
.+|... ++ +++|+++|++|+.+.- + -...+.++|.++.. +|+|++|+ +
T Consensus 122 ~~ye~~~~d--------------~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~-------~ 176 (282)
T PF14938_consen 122 EIYEEQLGD--------------YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAI-------E 176 (282)
T ss_dssp HHHCCTT----------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHH-------H
T ss_pred HHHHHHcCC--------------HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHH-------H
Confidence 999888 88 9999999999999822 1 13567888999999 99999999 5
Q ss_pred HHHHHHhcCC-------CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976 237 NYEKAVQLNW-------NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 293 (496)
Q Consensus 237 ~~~~Al~l~P-------~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~ 293 (496)
.|++.....- +-...+...+.++...|++ -.|...|++....+|.+.
T Consensus 177 ~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~----------v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 177 IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY----------VAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCC
Confidence 6665554321 1123566788899999998 999999999999998663
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.36 E-value=5.4e-05 Score=67.65 Aligned_cols=137 Identities=18% Similarity=0.095 Sum_probs=115.5
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Q 010976 137 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPTLHDAFYNWAIAIS 215 (496)
Q Consensus 137 ~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~P~~~~a~~~lg~~~~ 215 (496)
+.+.+..-..+.+.+.|.. .-.+.||..+.++|+ +.+|..+|++++. +..+++..+..++.+.+
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr--------------~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGR--------------YHEAVPHYQQALSGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhh--------------hhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 4445555556666666754 447789999999999 9999999999986 57789999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976 216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 293 (496)
Q Consensus 216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~ 293 (496)
. .+++.+|. ..+++..+.+|. .+..+..+|.+|..+|++ .+|...|+.++...|+ +
T Consensus 136 a----~~~~A~a~-------~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~----------a~Aesafe~a~~~ypg-~ 193 (251)
T COG4700 136 A----IQEFAAAQ-------QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKY----------ADAESAFEVAISYYPG-P 193 (251)
T ss_pred h----hccHHHHH-------HHHHHHhhcCCccCCCCchHHHHHHHHhcCCc----------hhHHHHHHHHHHhCCC-H
Confidence 9 99999999 889999999986 677888999999999999 9999999999999988 5
Q ss_pred HHHHHHHHHHHHcchhH
Q 010976 294 RAIYNLGTVLYGLAEDT 310 (496)
Q Consensus 294 ~a~~~lg~~~~~~g~~~ 310 (496)
.+....+..+..+|+..
T Consensus 194 ~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 194 QARIYYAEMLAKQGRLR 210 (251)
T ss_pred HHHHHHHHHHHHhcchh
Confidence 66666788888888743
No 174
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.35 E-value=5.2e-05 Score=84.47 Aligned_cols=114 Identities=12% Similarity=-0.064 Sum_probs=78.4
Q ss_pred hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--CCCCHHHH
Q 010976 130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAF 207 (496)
Q Consensus 130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--~P~~~~a~ 207 (496)
..+.+.|++++|...|++. .+.+..+|+.+...|.+.|+ +++|++.|++.... .| +...|
T Consensus 267 ~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~--------------~~eA~~lf~~M~~~g~~p-d~~t~ 328 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGY--------------SEEALCLYYEMRDSGVSI-DQFTF 328 (697)
T ss_pred HHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHcCCCC-CHHHH
Confidence 4577789999999999865 45578889999999999998 77787777777653 33 34456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH----------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976 208 YNWAIAISDRAKMRGRTKEAEELWK----------------------------QATKNYEKAVQLNWNSPQALNNWGLAL 259 (496)
Q Consensus 208 ~~lg~~~~~~~~~~g~~~eA~~~~~----------------------------~A~~~~~~Al~l~P~~~~a~~~lg~~l 259 (496)
..+..++.. .|++++|.+.+. .|...|++..+ .+...|+.+...|
T Consensus 329 ~~ll~a~~~----~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y 401 (697)
T PLN03081 329 SIMIRIFSR----LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHh----ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHH
Confidence 666666666 666666555442 23355554432 3567788888888
Q ss_pred HHccCcchH
Q 010976 260 QELSAIVPA 268 (496)
Q Consensus 260 ~~~g~~~~A 268 (496)
.+.|+.++|
T Consensus 402 ~~~G~~~~A 410 (697)
T PLN03081 402 GNHGRGTKA 410 (697)
T ss_pred HHcCCHHHH
Confidence 888888444
No 175
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=2.5e-05 Score=80.70 Aligned_cols=136 Identities=18% Similarity=0.134 Sum_probs=102.6
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 213 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 213 (496)
..++|++|+....+.+...|++.++.+..-.++.+.++ |++|++..++-..+.-.+ ...+..+.|
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k--------------y~~ALk~ikk~~~~~~~~-~~~fEKAYc 88 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDK--------------YEDALKLIKKNGALLVIN-SFFFEKAYC 88 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH--------------HHHHHHHHHhcchhhhcc-hhhHHHHHH
Confidence 35889999999999999999999999999999999998 999885544433222222 222678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH------
Q 010976 214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ------ 287 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~------ 287 (496)
.++ +++.++|+ ..+. .+++.+..++...|.+++++|+| ++|+..|+..++
T Consensus 89 ~Yr----lnk~Deal-------k~~~---~~~~~~~~ll~L~AQvlYrl~~y----------dealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 89 EYR----LNKLDEAL-------KTLK---GLDRLDDKLLELRAQVLYRLERY----------DEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHH----cccHHHHH-------HHHh---cccccchHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCchH
Confidence 888 99999999 6666 56777788888999999999999 555544444432
Q ss_pred ------------------------hcCC-CHHHHHHHHHHHHHcch
Q 010976 288 ------------------------LQFD-FHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 288 ------------------------l~P~-~~~a~~~lg~~~~~~g~ 308 (496)
..|. ..+.+||.+.++...|+
T Consensus 145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 2233 56788888888888888
No 176
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.2e-06 Score=79.24 Aligned_cols=93 Identities=20% Similarity=0.098 Sum_probs=84.8
Q ss_pred hhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010976 130 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 209 (496)
Q Consensus 130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~ 209 (496)
..++.-..|..||.+|.++|.++|..+..|.+.+.+|+++.+ ++.......+|++++|+...+++.
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~--------------~~~v~~dcrralql~~N~vk~h~f 83 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH--------------WEPVEEDCRRALQLDPNLVKAHYF 83 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh--------------hhhhhhhHHHHHhcChHHHHHHHH
Confidence 334556789999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010976 210 WAIAISDRAKMRGRTKEAEELWKQATKNYEK 240 (496)
Q Consensus 210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~ 240 (496)
+|.++.. ...|++|+..+++|...++.
T Consensus 84 lg~~~l~----s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 84 LGQWLLQ----SKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHh----hccccHHHHHHHHHHHHHhc
Confidence 9999999 99999999777777666654
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.32 E-value=1.3e-05 Score=76.30 Aligned_cols=104 Identities=24% Similarity=0.298 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976 159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 235 (496)
Q Consensus 159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~ 235 (496)
.|+.|.-++..|+ |..|...|..-++..|+. +.++|.||.+++. +|++.+|.
T Consensus 144 ~Y~~A~~~~ksgd--------------y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa------- 198 (262)
T COG1729 144 LYNAALDLYKSGD--------------YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAA------- 198 (262)
T ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHH-------
Confidence 7899999999999 999999999999999984 6899999999999 99999999
Q ss_pred HHHHHHHhcCCC---CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976 236 KNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 297 (496)
Q Consensus 236 ~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 297 (496)
..|..+++-.|+ -+++++.||.++..+|+. ++|...|+++++..|+...+..
T Consensus 199 ~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~----------d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 199 YIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT----------DEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHCCCCHHHHH
Confidence 677777766655 578999999999999999 9999999999999999876644
No 178
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.31 E-value=4.3e-06 Score=82.43 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=116.4
Q ss_pred hhhhcHHHHHHHHHHhhccc-----hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchh
Q 010976 109 QLAEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKD 183 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~-----~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 183 (496)
...|+++.|+..+.+.-... -+.+.+.++++.|.+.++..-+.+.+..-....-+++....|.
T Consensus 113 ~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~------------ 180 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG------------ 180 (290)
T ss_dssp CCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT------------
T ss_pred HHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc------------
Confidence 34577777777666542111 3456778999999999999988887766555555666666663
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976 184 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 263 (496)
Q Consensus 184 ~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 263 (496)
+.+.+|.-.|+......+.++..++.++.++.. +|++++|. ..+.+++..+|+++.++.|+..+...+|
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe-------~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAE-------ELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHH-------HHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 238999999999888888999999999999999 99999999 7888899999999999999999999999
Q ss_pred CcchHHHhhhhHHH-HHHHHHHHHHhcCCCHHH
Q 010976 264 AIVPAREKQTIVRT-AISKFRAAIQLQFDFHRA 295 (496)
Q Consensus 264 ~~~~A~~~~~~~~~-Ai~~~~~Al~l~P~~~~a 295 (496)
+. .+ +.+.+.+....+|+++..
T Consensus 250 k~----------~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 250 KP----------TEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp -T----------CHHHHHHHHHCHHHTTTSHHH
T ss_pred CC----------hhHHHHHHHHHHHhCCCChHH
Confidence 97 44 445666666678887753
No 179
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=1.9e-05 Score=80.66 Aligned_cols=99 Identities=17% Similarity=0.087 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
++.|+..|++..+.+|+ +...++.++.. .++-.+|+ ..+.+++..+|.+...+...+..+...+++
T Consensus 185 ~~~ai~lle~L~~~~pe---v~~~LA~v~l~----~~~E~~AI-------~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPE---VAVLLARVYLL----MNEEVEAI-------RLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHh----cCcHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 99999999999998876 56668888887 88888887 888999999999999999999999999999
Q ss_pred chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
+.|+...++|+.+.|++...|+.|+.+|..+|+
T Consensus 251 ----------~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 251 ----------ELALEIAKKAVELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred ----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998
No 180
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.27 E-value=2.3e-05 Score=67.79 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976 155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELW 231 (496)
Q Consensus 155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 231 (496)
.+..++.-|.-.++.|+ |++|++.|+......|. -..+...||.+|+. .+++++|+
T Consensus 9 ~~~~ly~~a~~~l~~~~--------------Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~--- 67 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGN--------------YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAI--- 67 (142)
T ss_pred CHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHH---
Confidence 35678889999999999 99999999999999886 45789999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCc-----chHHHhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010976 232 KQATKNYEKAVQLNWNSP---QALNNWGLALQELSAI-----VPAREKQTIVRTAISKFRAAIQLQFDFHRA 295 (496)
Q Consensus 232 ~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~-----~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a 295 (496)
..+++-|+++|+++ .+++..|.+++.+..- -..-...+....|...|++.++.-|++..+
T Consensus 68 ----a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 68 ----AAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred ----HHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 89999999999875 5789999999887650 000224455689999999999999997643
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.25 E-value=0.00014 Score=68.72 Aligned_cols=162 Identities=20% Similarity=0.122 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHH
Q 010976 115 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 191 (496)
Q Consensus 115 ~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 191 (496)
.++..+|++++... ..|+|++|+..|+.+....|.. ..+...++.++++.++ +++|+.
T Consensus 32 ~p~~~LY~~g~~~L-----~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~--------------y~~A~~ 92 (254)
T COG4105 32 LPASELYNEGLTEL-----QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGE--------------YDLALA 92 (254)
T ss_pred CCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhccc--------------HHHHHH
Confidence 35667777766544 4699999999999999999876 4788899999999999 999999
Q ss_pred HHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH-----------------
Q 010976 192 KYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA----------------- 251 (496)
Q Consensus 192 ~~~~Al~l~P~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a----------------- 251 (496)
..++-+.+.|+++ -++|..|.+++.. ..+...=...-.+|+..++..++.-|++.-+
T Consensus 93 ~~drFi~lyP~~~n~dY~~YlkgLs~~~~---i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 93 YIDRFIRLYPTHPNADYAYYLKGLSYFFQ---IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcc---CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999998865 4678888887652 2222222223356778999999999985321
Q ss_pred HHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcch
Q 010976 252 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAE 308 (496)
Q Consensus 252 ~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~ 308 (496)
=..+|..|.+.|.+ -.|+.-++.+++--|+. .+++..+..+|..+|-
T Consensus 170 Em~IaryY~kr~~~----------~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 170 EMAIARYYLKRGAY----------VAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHHHhcCh----------HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 12345566666666 99999999999986654 4788888999999995
No 182
>PLN03077 Protein ECB2; Provisional
Probab=98.22 E-value=0.00012 Score=83.67 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCC--CCCCCCcH--------------HHHHHHHHH
Q 010976 271 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV--NPREVSPN--------------ELYSQSAIY 334 (496)
Q Consensus 271 ~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~--~~~~~~~~--------------~~~~~A~~~ 334 (496)
+.|++++|...|+.. +.+...|+.+...|...|+...+..... ......|. ..+.++..+
T Consensus 536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 455668888888775 4567778888888888887544332211 00111111 125667777
Q ss_pred HHHHH---hcCCcHHHHHHHHHhhhc
Q 010976 335 IAAAH---ALKPSYSVYSSALRLVRS 357 (496)
Q Consensus 335 ~~~a~---~l~p~~~~y~~al~~~~~ 357 (496)
|+... .+.|+...|...+..+-+
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 77665 346776666665555433
No 183
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.18 E-value=0.0001 Score=84.53 Aligned_cols=191 Identities=15% Similarity=0.037 Sum_probs=136.6
Q ss_pred hhhhcHHHHHHHHHHhhccc----------------hhhhHhhccHHHHHHHHHHHHHhCCC--------CHHHHHHHHH
Q 010976 109 QLAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPE--------DYDALYNWAL 164 (496)
Q Consensus 109 ~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~g~~~~Ai~~~~~al~~~P~--------~~~a~~~lg~ 164 (496)
...|+++.|...+.+++... +..+..+|++++|...+++++.+... ...++..+|.
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 45678888888887776432 22345679999999999999886321 2344667899
Q ss_pred HHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976 165 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 239 (496)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~ 239 (496)
+++..|+ +++|...+++++.+... ...++..+|.++.. .|++++|...+.++...+.
T Consensus 582 ~~~~~G~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 582 LLWEWAR--------------LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHhcC--------------HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHh
Confidence 9999999 99999999999887332 34566778888888 9999999988877755432
Q ss_pred HHH--------------------------------hcCC--CC----HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHH
Q 010976 240 KAV--------------------------------QLNW--NS----PQALNNWGLALQELSAIVPAREKQTIVRTAISK 281 (496)
Q Consensus 240 ~Al--------------------------------~l~P--~~----~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~ 281 (496)
..- ...+ .. ...+.++|.++...|++ ++|+..
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~----------~~A~~~ 713 (903)
T PRK04841 644 NGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF----------DEAEII 713 (903)
T ss_pred cccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH----------HHHHHH
Confidence 210 0000 00 01134667777777777 999999
Q ss_pred HHHHHHhc------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 282 FRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 282 ~~~Al~l~------P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
|++++... .....++..+|.++...|+ ...|..++.+|+++.....
T Consensus 714 l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~-------------------~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 714 LEELNENARSLRLMSDLNRNLILLNQLYWQQGR-------------------KSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHhCccc
Confidence 99998862 2334678889999999998 7788888888887765433
No 184
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.17 E-value=5e-06 Score=80.77 Aligned_cols=88 Identities=20% Similarity=0.159 Sum_probs=81.4
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 213 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 213 (496)
..|.++.||+.|..+|.++|..+..|..++.++.++++ ...||..|..|+.++|+.+.-|-.+|.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k--------------p~~airD~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK--------------PNAAIRDCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccC--------------CchhhhhhhhhhccCcccccccchhhHH
Confidence 46889999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976 214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 246 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P 246 (496)
... +|++.+|. .+++.+.+++-
T Consensus 192 ~rl----lg~~e~aa-------~dl~~a~kld~ 213 (377)
T KOG1308|consen 192 ERL----LGNWEEAA-------HDLALACKLDY 213 (377)
T ss_pred HHH----hhchHHHH-------HHHHHHHhccc
Confidence 988 99999998 67777777653
No 185
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.16 E-value=0.0001 Score=84.61 Aligned_cols=149 Identities=12% Similarity=-0.030 Sum_probs=115.4
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----
Q 010976 132 RSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---- 202 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---- 202 (496)
....|++++|...++++++..+.. ..++..+|.++...|+ +++|...+++++.+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~--------------~~~A~~~~~~al~~~~~~g~~ 527 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE--------------LARALAMMQQTEQMARQHDVY 527 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhcch
Confidence 345799999999999999865543 2456788999999999 99999999999987432
Q ss_pred --CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHH
Q 010976 203 --LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 279 (496)
Q Consensus 203 --~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai 279 (496)
...++.++|.++.. .|++++|...+++++...+..-.. .+.....+..+|.+++..|++ ++|.
T Consensus 528 ~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~----------~~A~ 593 (903)
T PRK04841 528 HYALWSLLQQSEILFA----QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL----------DEAE 593 (903)
T ss_pred HHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH----------HHHH
Confidence 12466788999998 999999998888877766653211 122344577889999999999 9999
Q ss_pred HHHHHHHHhcC-----CCHHHHHHHHHHHHHcch
Q 010976 280 SKFRAAIQLQF-----DFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 280 ~~~~~Al~l~P-----~~~~a~~~lg~~~~~~g~ 308 (496)
..+++++.+.. ....++.++|.++...|+
T Consensus 594 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 594 QCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 99999988632 235567778889999998
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.13 E-value=5.2e-05 Score=72.23 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=87.6
Q ss_pred HhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHH
Q 010976 133 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA 206 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a 206 (496)
++.|+|..|...|..-++..|+. +.++|.||.+++.+|+ |+.|...|..+++-.|++ +++
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~--------------y~~Aa~~f~~~~k~~P~s~KApda 217 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD--------------YEDAAYIFARVVKDYPKSPKAPDA 217 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc--------------chHHHHHHHHHHHhCCCCCCChHH
Confidence 35699999999999999999986 6899999999999999 999999999999997774 688
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976 207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 254 (496)
Q Consensus 207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~ 254 (496)
++.+|.++.. +|+.++|. ..|++.++..|+...+..-
T Consensus 218 llKlg~~~~~----l~~~d~A~-------atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 218 LLKLGVSLGR----LGNTDEAC-------ATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHH----hcCHHHHH-------HHHHHHHHHCCCCHHHHHH
Confidence 9999999999 99999999 8889999999988776543
No 187
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.13 E-value=5.2e-05 Score=65.57 Aligned_cols=101 Identities=25% Similarity=0.246 Sum_probs=82.7
Q ss_pred HhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH---HH
Q 010976 133 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DA 206 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~---~a 206 (496)
...|+|.+|++.|+......|.. ..+...++.+|+..++ +++|+..+++-|+++|+++ .+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~--------------y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD--------------YEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCCCccHH
Confidence 35699999999999999998865 5789999999999999 9999999999999999876 57
Q ss_pred HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010976 207 FYNWAIAISDRAKMRGR--------TKEAEELWKQATKNYEKAVQLNWNSPQA 251 (496)
Q Consensus 207 ~~~lg~~~~~~~~~~g~--------~~eA~~~~~~A~~~~~~Al~l~P~~~~a 251 (496)
+|..|.+++. +.. .+.=.....+|...|++.+..-|++..+
T Consensus 87 ~Y~~gL~~~~----~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYE----QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHH----HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8999999988 543 1112223455669999999999987654
No 188
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.09 E-value=0.00012 Score=74.77 Aligned_cols=194 Identities=22% Similarity=0.154 Sum_probs=127.4
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-------CC-----
Q 010976 134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-------CP----- 201 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-------~P----- 201 (496)
+..+.+.-++.-.+||+++|+.+++|..|+.-... - ..+|.++|+++++. +.
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~--T--------------i~Eae~l~rqAvkAgE~~lg~s~~~~~~ 243 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEEAS--T--------------IVEAEELLRQAVKAGEASLGKSQFLQHH 243 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc--C--------------HHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence 35677889999999999999999999887653221 1 45555555555554 11
Q ss_pred -----------C--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCcc
Q 010976 202 -----------T--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIV 266 (496)
Q Consensus 202 -----------~--~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~ 266 (496)
. ...+-..+|+|..+ +|+.+||+ +.|+..++.+|. +..++.||-.+|..++.|
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCark----lGr~~EAI-------k~~rdLlke~p~~~~l~IrenLie~LLelq~Y- 311 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARK----LGRLREAI-------KMFRDLLKEFPNLDNLNIRENLIEALLELQAY- 311 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHH----hCChHHHH-------HHHHHHHhhCCccchhhHHHHHHHHHHhcCCH-
Confidence 0 02344678888888 99999999 888988887775 567899999999999999
Q ss_pred hHHHhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976 267 PAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY 345 (496)
Q Consensus 267 ~A~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 345 (496)
.++...+.+-=.+ -|+.+...|.-+.+..+...+..... .......++++ ..|.+.+.+|.+.+|..
T Consensus 312 ---------ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e-~a~rRGls~ae--~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 312 ---------ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE-AASRRGLSPAE--MNAVEAIHRAVEFNPHV 379 (539)
T ss_pred ---------HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch-hhhhcCCChhH--HHHHHHHHHHHHhCCCC
Confidence 7777777664222 26677777777665544332110000 00001123333 45788899999999999
Q ss_pred HHHHHHHHhhhcCCchhhhhhcc
Q 010976 346 SVYSSALRLVRSMLPLPYLKAGY 368 (496)
Q Consensus 346 ~~y~~al~~~~~~~p~~~l~~g~ 368 (496)
+.|---.+-+. .-|...+++|.
T Consensus 380 p~YLLe~K~Li-lPPehilkrGD 401 (539)
T PF04184_consen 380 PKYLLEMKSLI-LPPEHILKRGD 401 (539)
T ss_pred chhhhccCCCC-CChHHhcCCCc
Confidence 98865554442 11333555553
No 189
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.07 E-value=6.1e-06 Score=68.62 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=70.0
Q ss_pred hccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC-
Q 010976 366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP- 444 (496)
Q Consensus 366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 444 (496)
.|++.-............|.++||+|....|..+...... .....-.|+|..+.+++++.+-.-+
T Consensus 3 ~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~--------------~~~~kG~I~L~~~~~ve~~~~~~~~~ 68 (106)
T cd01238 3 ESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK--------------RGSKKGSIDLSKIKCVETVKPEKNPP 68 (106)
T ss_pred ceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc--------------ccCcceeEECCcceEEEEecCCcCcc
Confidence 4556555444444455689999999987777665432221 1123568999999888877665433
Q ss_pred ----CCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010976 445 ----PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 445 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 478 (496)
....|.|.|.....|+.|+|.++.++|++||+.|
T Consensus 69 ~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 69 IPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred cccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 4677888876666799999999999999999865
No 190
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.06 E-value=5.9e-06 Score=83.77 Aligned_cols=106 Identities=22% Similarity=0.168 Sum_probs=96.9
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976 182 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 261 (496)
Q Consensus 182 ~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 261 (496)
..+.|+.|+..|.+||+++|+++..+-+++.++.. .+.+..|+ ..+.+|++++|.+..+|+..|.+...
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al-------~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGAL-------HDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHH-------HHHHhhhhcCchhhheeeeccHHHHh
Confidence 33449999999999999999999999999999999 88888888 89999999999999999999999999
Q ss_pred ccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 262 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 262 ~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
++++ .+|...|++...+.|+++.+...+-.|-.-..+
T Consensus 85 l~~~----------~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 85 LGEF----------KKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHH----------HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999998888777654444
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00026 Score=66.62 Aligned_cols=137 Identities=17% Similarity=0.196 Sum_probs=113.5
Q ss_pred hHhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH----hCC--CCH
Q 010976 132 RSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR----LCP--TLH 204 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~----l~P--~~~ 204 (496)
..-.|+|.-.+..+.+.++.+ |.++.....||.+..+.|+ .+.|..+|++.-+ ++- .+.
T Consensus 187 llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD--------------~k~a~~yf~~vek~~~kL~~~q~~~ 252 (366)
T KOG2796|consen 187 LLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD--------------IKTAEKYFQDVEKVTQKLDGLQGKI 252 (366)
T ss_pred HhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHHHhhhhccchhH
Confidence 334588999999999999998 6788899999999999999 9999999995433 332 234
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHH
Q 010976 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 284 (496)
Q Consensus 205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~ 284 (496)
.+..+.+.+|.. .+++.+|. ..|.+++..||.++.+-+|.+.|+..+|+. .+|++..+.
T Consensus 253 ~V~~n~a~i~lg----~nn~a~a~-------r~~~~i~~~D~~~~~a~NnKALcllYlg~l----------~DAiK~~e~ 311 (366)
T KOG2796|consen 253 MVLMNSAFLHLG----QNNFAEAH-------RFFTEILRMDPRNAVANNNKALCLLYLGKL----------KDALKQLEA 311 (366)
T ss_pred HHHhhhhhheec----ccchHHHH-------HHHhhccccCCCchhhhchHHHHHHHHHHH----------HHHHHHHHH
Confidence 566777777777 88888888 899999999999999999999999999999 999999999
Q ss_pred HHHhcCCCH---HHHHHHHHHH
Q 010976 285 AIQLQFDFH---RAIYNLGTVL 303 (496)
Q Consensus 285 Al~l~P~~~---~a~~~lg~~~ 303 (496)
++.+.|... ...+||-..|
T Consensus 312 ~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 312 MVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HhccCCccchhhhHHHHHHHHH
Confidence 999999743 4555665544
No 192
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.98 E-value=1.5e-05 Score=54.78 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
++++..+|.+|..+|+ +++|++.|+++++.+|++..+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~--------------~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQ--------------PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4679999999999999 999999999999999999999999875
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.97 E-value=0.00055 Score=61.37 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=94.7
Q ss_pred hhHhhccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC--CHHHH
Q 010976 131 GRSRQRILTFAAKRYANAIE-RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAF 207 (496)
Q Consensus 131 ~~~~~g~~~~Ai~~~~~al~-~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~--~~~a~ 207 (496)
.....|++.+|..+|++++. +.-+++..+..++...+..++ +..|...+++..+.+|. .++..
T Consensus 98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~--------------~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE--------------FAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHhhcCCccCCCCch
Confidence 45567999999999999986 567889999999999999999 99999999999999987 56778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
..+|.+|.. +|++.+|. ..|+.++...| .+++....+..+..+|+.
T Consensus 164 Ll~aR~laa----~g~~a~Ae-------safe~a~~~yp-g~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 164 LLFARTLAA----QGKYADAE-------SAFEVAISYYP-GPQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHHHHHHHh----cCCchhHH-------HHHHHHHHhCC-CHHHHHHHHHHHHHhcch
Confidence 888999999 99999999 56666666555 577888889999999988
No 194
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.96 E-value=1.1e-05 Score=81.76 Aligned_cols=103 Identities=24% Similarity=0.234 Sum_probs=94.7
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
...+.|+.|+..|.+||+++|+.+..+.+++..+.+.++ |..|+..+.+|++++|....+|+..|.
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~--------------~~~Al~Da~kaie~dP~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVES--------------FGGALHDALKAIELDPTYIKAYVRRGT 80 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeech--------------hhhHHHHHHhhhhcCchhhheeeeccH
Confidence 345889999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010976 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 260 (496)
+... ++++.+|+ ..|++...+.|+.+.+...+-.+-.
T Consensus 81 a~m~----l~~~~~A~-------~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 81 AVMA----LGEFKKAL-------LDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHh----HHHHHHHH-------HHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9998 88888888 8999999999999998887776654
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.95 E-value=1.6e-05 Score=54.67 Aligned_cols=44 Identities=25% Similarity=0.175 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010976 249 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 302 (496)
Q Consensus 249 ~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~ 302 (496)
+.++..+|.+|..+|++ ++|+..|+++++.+|+++.++..||.+
T Consensus 1 p~~~~~la~~~~~~G~~----------~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQP----------DEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 36789999999999999 999999999999999999999999863
No 196
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0002 Score=69.90 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 273 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 273 ~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
-.+++||..|.++|.-+|+....-.+++.||+++.-
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence 456999999999999999999999999999999885
No 197
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.93 E-value=1.2e-05 Score=51.99 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q 010976 192 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAE 228 (496)
Q Consensus 192 ~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~ 228 (496)
+|++||+++|+++.+|++||.+|.. .|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~----~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN----QGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH----CcCHHhhc
Confidence 4899999999999999999999999 99999986
No 198
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.92 E-value=8.7e-06 Score=52.60 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 237 NYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
+|++||+++|+++.+|+++|.+|...|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDY 29 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence 48899999999999999999999999999
No 199
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00021 Score=66.57 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCC----------HHHHHHHHHHHHHccCcchHHHhhh
Q 010976 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNS----------PQALNNWGLALQELSAIVPAREKQT 273 (496)
Q Consensus 205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al-~l~P~~----------~~a~~~lg~~l~~~g~~~~A~~~~~ 273 (496)
.++...|+-++. +|+|.+|...|+.|+.+++... +-.|.. ...+.|++.|+...|+|
T Consensus 179 ~~l~q~GN~lfk----~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~-------- 246 (329)
T KOG0545|consen 179 PVLHQEGNRLFK----LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY-------- 246 (329)
T ss_pred HHHHHhhhhhhh----hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH--------
Confidence 466778888888 9999999999999999888754 334544 45688999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH-HHHHHH
Q 010976 274 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS-VYSSAL 352 (496)
Q Consensus 274 ~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~-~y~~al 352 (496)
-+++++....|..+|.|..+++..|.++...=+ ..+|...|.++++++|... +..+-+
T Consensus 247 --yevleh~seiL~~~~~nvKA~frRakAhaa~Wn-------------------~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 247 --YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN-------------------EAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred --HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC-------------------HHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 999999999999999999999999988765554 4678888999999999877 444444
Q ss_pred Hhh
Q 010976 353 RLV 355 (496)
Q Consensus 353 ~~~ 355 (496)
+++
T Consensus 306 r~l 308 (329)
T KOG0545|consen 306 RLL 308 (329)
T ss_pred HHH
Confidence 443
No 200
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.83 E-value=0.00068 Score=69.45 Aligned_cols=113 Identities=24% Similarity=0.158 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC----------------C--
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW----------------N-- 247 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P----------------~-- 247 (496)
.++-++.-++||+++|+.+++|..|+.-. ..-..+|.+.|++|++.-+..+..+. .
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAEEe------A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAEEE------ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccccc------ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 88899999999999999999999887543 34567899999998887777665432 0
Q ss_pred CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcchhHHhcc
Q 010976 248 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD--FHRAIYNLGTVLYGLAEDTLRTG 314 (496)
Q Consensus 248 ~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~a~~ 314 (496)
...+..++|.+.+++|+. ++|++.|+..++..|. +-.+++||-.++..++.......
T Consensus 258 ~~y~KrRLAmCarklGr~----------~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRL----------REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhHHHHHHHHHHhCCh----------HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 134567899999999999 9999999999998775 56799999999999998655443
No 201
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00016 Score=67.37 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHHH
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLH----------DAFYNWAIAISDRA 218 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~P~~~----------~a~~~lg~~~~~~~ 218 (496)
.++...|+-++..|+ |.+|...|+.|+.. .|..+ ..+.|+..|+..
T Consensus 179 ~~l~q~GN~lfk~~~--------------ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-- 242 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGR--------------YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-- 242 (329)
T ss_pred HHHHHhhhhhhhhcc--------------HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh--
Confidence 456677777777777 99999999999865 45443 467899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010976 219 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 295 (496)
Q Consensus 219 ~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a 295 (496)
.|+|-+++ +.+...|..+|.|..+|+..|.+....=+. ++|.+.|.++|+++|.-..+
T Consensus 243 --~~e~yevl-------eh~seiL~~~~~nvKA~frRakAhaa~Wn~----------~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 243 --KEEYYEVL-------EHCSEILRHHPGNVKAYFRRAKAHAAVWNE----------AEAKADLQKVLELDPSLASV 300 (329)
T ss_pred --HHHHHHHH-------HHHHHHHhcCCchHHHHHHHHHHHHhhcCH----------HHHHHHHHHHHhcChhhHHH
Confidence 88888888 899999999999999999999999888888 99999999999999975543
No 202
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00017 Score=70.05 Aligned_cols=100 Identities=17% Similarity=0.106 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976 158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---CPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 233 (496)
Q Consensus 158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---~P~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~ 233 (496)
-+..-|+-|+...+ |..|+.+|.++|+. +|+ ++..|.|++.|... +|+|..++
T Consensus 83 n~KeeGN~~fK~Kr--------------yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l----- 139 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKR--------------YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSAL----- 139 (390)
T ss_pred HHHHHhHHHHHhhh--------------HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHH-----
Confidence 34455888888888 99999999999998 344 56789999999998 66666666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 234 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 234 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
..+.+++.++|.+..++++-+.|+.++.++ ++|+.+++..+.++-+.
T Consensus 140 --~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~----------~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 140 --NDCSAALKLKPTHLKAYIRGAKCLLELERF----------AEAVNWCEEGLQIDDEA 186 (390)
T ss_pred --HHHHHHHhcCcchhhhhhhhhHHHHHHHHH----------HHHHHHHhhhhhhhHHH
Confidence 999999999999999999999999999999 88888888887776543
No 203
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0025 Score=60.39 Aligned_cols=140 Identities=16% Similarity=0.077 Sum_probs=111.3
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
+...+++++|++..... .+.++...--.|+.++.+ ++-|.+.+++..+++-+ ..+..|+
T Consensus 118 ~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r--------------~d~A~~~lk~mq~ided--~tLtQLA 176 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHR--------------FDLAEKELKKMQQIDED--ATLTQLA 176 (299)
T ss_pred hhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHccchH--HHHHHHH
Confidence 45568888888877663 345666666778888888 99999999999887643 4566677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
.++...+.-.+++.+|. -.|+..-+..|-.+..++..+.+...+|++ ++|...++.||..+++
T Consensus 177 ~awv~la~ggek~qdAf-------yifeE~s~k~~~T~~llnG~Av~~l~~~~~----------eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 177 QAWVKLATGGEKIQDAF-------YIFEELSEKTPPTPLLLNGQAVCHLQLGRY----------EEAESLLEEALDKDAK 239 (299)
T ss_pred HHHHHHhccchhhhhHH-------HHHHHHhcccCCChHHHccHHHHHHHhcCH----------HHHHHHHHHHHhccCC
Confidence 77766333334455555 788888887777899999999999999999 9999999999999999
Q ss_pred CHHHHHHHHHHHHHcchh
Q 010976 292 FHRAIYNLGTVLYGLAED 309 (496)
Q Consensus 292 ~~~a~~~lg~~~~~~g~~ 309 (496)
+++.+.|+-.+-..+|++
T Consensus 240 dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKD 257 (299)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999999975
No 204
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00061 Score=65.27 Aligned_cols=139 Identities=18% Similarity=0.112 Sum_probs=99.8
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC---------CCCCCcchhhhHHHHHHH-------
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS---------LDSTSPSKDALLEEACKK------- 192 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~---------~~~~~~~~~~~~~~A~~~------- 192 (496)
+.|++...+|..|..+|++.-.+.|....-....+..+++.+...+ ....-....=.++.||++
T Consensus 51 gyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g 130 (459)
T KOG4340|consen 51 GYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPG 130 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcc
Confidence 6678889999999999999999999987777767777777666100 000000000012222221
Q ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHH
Q 010976 193 YDEATRLCP--TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE 270 (496)
Q Consensus 193 ~~~Al~l~P--~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~ 270 (496)
.+..++.-| +.++...+.|.++++ .|++++|+ +-|+.|++..--++-.-+|++.++++.|++
T Consensus 131 ~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAv-------qkFqaAlqvsGyqpllAYniALaHy~~~qy----- 194 (459)
T KOG4340|consen 131 SRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAV-------QKFQAALQVSGYQPLLAYNLALAHYSSRQY----- 194 (459)
T ss_pred hHHHHHhccCCCccchhccchheeec----cccHHHHH-------HHHHHHHhhcCCCchhHHHHHHHHHhhhhH-----
Confidence 112223345 577888999999999 99999999 788899999988999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHh
Q 010976 271 KQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 271 ~~~~~~~Ai~~~~~Al~l 288 (496)
..|+++....++.
T Consensus 195 -----asALk~iSEIieR 207 (459)
T KOG4340|consen 195 -----ASALKHISEIIER 207 (459)
T ss_pred -----HHHHHHHHHHHHh
Confidence 8888877666654
No 205
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.73 E-value=5.1e-05 Score=61.82 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=65.6
Q ss_pred hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCceeee
Q 010976 382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLV 461 (496)
Q Consensus 382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (496)
..|.++||+|+...|.....+. ....-.|||.+|.+|+.+.+-+......|.|.|.+...|+.
T Consensus 19 ~n~KkRwF~Lt~~~L~Y~k~~~-----------------~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~ 81 (98)
T cd01244 19 LHFKKRYFQLTTTHLSWAKDVQ-----------------CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQ 81 (98)
T ss_pred cCCceeEEEECCCEEEEECCCC-----------------CceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEE
Confidence 5899999999987777643211 24567899999999998888776677899999888878999
Q ss_pred ecChhhhhhHHHHHHH
Q 010976 462 ADSWEALDGWLDAIRL 477 (496)
Q Consensus 462 ~~~~~~~~~~~~a~~~ 477 (496)
|+|..+.+.|.+||+=
T Consensus 82 a~s~~E~~~Wi~al~k 97 (98)
T cd01244 82 FEAPVEATDWLNALEK 97 (98)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999973
No 206
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0042 Score=57.75 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=119.7
Q ss_pred hhhhhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCC-----CC-HHHHHHHHHHHHHhcCCCCCCCCCcc
Q 010976 108 HQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP-----ED-YDALYNWALVLQESADNVSLDSTSPS 181 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P-----~~-~~a~~~lg~~~~~~~~~~~~~~~~~~ 181 (496)
+...+.+++|.+++.++-... ....+++.|-..|.++-...- ++ ...|..-+.+|. ..+
T Consensus 24 fgg~~k~eeAadl~~~Aan~y----klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~---------- 88 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMY----KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVD---------- 88 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccC----------
Confidence 445678999999998776444 335778888888888866531 12 344445555554 447
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010976 182 KDALLEEACKKYDEATRLCPTLH------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 255 (496)
Q Consensus 182 ~~~~~~~A~~~~~~Al~l~P~~~------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~l 255 (496)
.++|+.++++++++..+.. .-+..+|.+|.. .+.++++|+.+|++|-++|..- +.+..--.++...
T Consensus 89 ----~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~ekaI~~YE~Aae~yk~e-es~ssANKC~lKv 160 (288)
T KOG1586|consen 89 ----PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDFEKAIAHYEQAAEYYKGE-ESVSSANKCLLKV 160 (288)
T ss_pred ----hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHHHHcch-hhhhhHHHHHHHH
Confidence 9999999999999865532 234467777754 1477888887777777777531 1111122344555
Q ss_pred HHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH-------HHHHHHHHcchhHHhccCCCCCCCCCcHHHH
Q 010976 256 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY-------NLGTVLYGLAEDTLRTGGTVNPREVSPNELY 328 (496)
Q Consensus 256 g~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~-------~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 328 (496)
+..-..+++| .+||..|++.....-++.-.-+ .-|.|++-..+ -
T Consensus 161 A~yaa~leqY----------~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D-------------------~ 211 (288)
T KOG1586|consen 161 AQYAAQLEQY----------SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD-------------------E 211 (288)
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc-------------------H
Confidence 5556667777 9999999999988766654333 33444444343 2
Q ss_pred HHHHHHHHHHHhcCCcHH
Q 010976 329 SQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 329 ~~A~~~~~~a~~l~p~~~ 346 (496)
-.+...+++-..++|.+.
T Consensus 212 v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 212 VNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHhcCCccc
Confidence 344455667777888776
No 207
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.003 Score=59.85 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=122.6
Q ss_pred CCCChhhhhhcHHHHHHHHHHhhccc-----hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 010976 103 QGNTPHQLAEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 177 (496)
Q Consensus 103 ~~~~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~ 177 (496)
.....+...+++++|+........+. .....+..+++-|....++...++- -..+..||..+....-
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~------ 184 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLAT------ 184 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhc------
Confidence 34445567889999999988754444 3455677889999999999988764 3456667666655432
Q ss_pred CCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976 178 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 257 (496)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 257 (496)
.-+.+..|.-.|+..-+..|-.+..++..+.|+.. +|++++|. ..++.+|..++++++++.|+-.
T Consensus 185 ----ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe-------~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 185 ----GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAE-------SLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred ----cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHH-------HHHHHHHhccCCCHHHHHHHHH
Confidence 11238899999999999888899999999999999 99999999 8999999999999999999999
Q ss_pred HHHHccCcchHHHhhhhHHHHHHHHH-HHHHhcCCCH
Q 010976 258 ALQELSAIVPAREKQTIVRTAISKFR-AAIQLQFDFH 293 (496)
Q Consensus 258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~-~Al~l~P~~~ 293 (496)
+-...|.- .++..-+- +....+|.++
T Consensus 250 ~a~~~Gkd----------~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 250 LALHLGKD----------AEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHhCCC----------hHHHHHHHHHHHhcCCcch
Confidence 99999998 66665443 4444466654
No 208
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00038 Score=70.67 Aligned_cols=147 Identities=15% Similarity=0.019 Sum_probs=116.2
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHH-HHhCCC--------C
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA-TRLCPT--------L 203 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A-l~l~P~--------~ 203 (496)
....++..+..-.+.+..+..+.++++......++..|+ +.+|.+.+... +.-.|. .
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn--------------~~kA~KlL~~sni~~~~g~~~T~q~~~ 282 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN--------------HPKAMKLLLVSNIHKEAGGTITPQLSS 282 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc--------------hHHHHHHHHhcccccccCccccchhhh
Confidence 344566666666667777778889999999999999999 99999877543 222333 2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--C---------CCHHHHHHHHHHHHHccCcchHHHhh
Q 010976 204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--W---------NSPQALNNWGLALQELSAIVPAREKQ 272 (496)
Q Consensus 204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~--P---------~~~~a~~~lg~~l~~~g~~~~A~~~~ 272 (496)
-..|+|+|.+++. +|.|.-+...|.+|+..+..-+... | ...+.+||.|..|...|+.
T Consensus 283 cif~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP------- 351 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQ----LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP------- 351 (696)
T ss_pred heeecCcceEeee----hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc-------
Confidence 3457999999999 9999999988888886444444332 2 3567899999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976 273 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307 (496)
Q Consensus 273 ~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g 307 (496)
-.|.++|.+++..--.+|..|..|+.|+....
T Consensus 352 ---l~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 352 ---LLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred ---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876543
No 209
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.67 E-value=8.7e-05 Score=61.09 Aligned_cols=96 Identities=23% Similarity=0.375 Sum_probs=66.7
Q ss_pred hccccCCCCCCCC----CChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC
Q 010976 366 AGYLTAPPAGIPV----APHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL 441 (496)
Q Consensus 366 ~g~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (496)
.|+|...|+.... -....|+|+||+|...++..+-...+. . ..+.-.|+|....+|..+.+.
T Consensus 2 ~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~-----------~---~~p~G~IdL~~~~~V~~~~~~ 67 (104)
T cd01236 2 CGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP-----------T---TLPQGTIDMNQCTDVVDAEAR 67 (104)
T ss_pred cceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC-----------C---cccceEEEccceEEEeecccc
Confidence 4777777666542 456789999999975555443211110 0 122456888888888866654
Q ss_pred CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHH
Q 010976 442 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIR 476 (496)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 476 (496)
+- .+++|.|.|..--.||.|+|.++.++|..+|.
T Consensus 68 ~~-~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 68 TG-QKFSICILTPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred cC-CccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence 33 46889998876666999999999999999985
No 210
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.67 E-value=8e-05 Score=47.87 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976 156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 203 (496)
Q Consensus 156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~ 203 (496)
+.+|+++|.+|..+|+ +++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD--------------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCC--------------chHHHHHHHHHHHHCcCC
Confidence 4689999999999999 999999999999999974
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00081 Score=63.40 Aligned_cols=157 Identities=16% Similarity=0.119 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 235 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~ 235 (496)
...+.+..++.-++. |.-.+..+.+.++.+ |..+.....||.+-.+ .|+.+.|...|+...
T Consensus 178 ~Vmy~~~~~llG~kE--------------y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKE--------------YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHHHHhcchh--------------hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHH
Confidence 356677778888888 999999999999998 6688889999999999 999999995554333
Q ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhc
Q 010976 236 KNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 313 (496)
Q Consensus 236 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~ 313 (496)
+ .+-.++ ..+...+.|.+.++.-.+++ ..|...|.+.+..||.++.+.+|.+.|+..+|+
T Consensus 240 k---~~~kL~~~q~~~~V~~n~a~i~lg~nn~----------a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~----- 301 (366)
T KOG2796|consen 240 K---VTQKLDGLQGKIMVLMNSAFLHLGQNNF----------AEAHRFFTEILRMDPRNAVANNNKALCLLYLGK----- 301 (366)
T ss_pred H---HHhhhhccchhHHHHhhhhhheecccch----------HHHHHHHhhccccCCCchhhhchHHHHHHHHHH-----
Confidence 2 222333 23456677888888888888 999999999999999999999999999999998
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhcCCchhh
Q 010976 314 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPY 363 (496)
Q Consensus 314 ~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~~~p~~~ 363 (496)
...|+..++++....|....-...+-.+..+....|
T Consensus 302 --------------l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Y 337 (366)
T KOG2796|consen 302 --------------LKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEY 337 (366)
T ss_pred --------------HHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHh
Confidence 778889999999999987644444444444443333
No 212
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.64 E-value=0.0018 Score=63.62 Aligned_cols=153 Identities=10% Similarity=0.061 Sum_probs=107.6
Q ss_pred hhhHhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH
Q 010976 130 EGRSRQRILTFAAKRYANAIERNPEDY-----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 204 (496)
Q Consensus 130 ~~~~~~g~~~~Ai~~~~~al~~~P~~~-----~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~ 204 (496)
.++.+..++.+++.+....+.+-...+ .++..+|..+..++. |+++++.|++|+++.-++.
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~--------------fq~~Lesfe~A~~~A~~~~ 156 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV--------------FQKALESFEKALRYAHNND 156 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH--------------HHHHHHHHHHHHHHhhccC
Confidence 344455677777777777666543222 456667888888888 9999999999999844332
Q ss_pred ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHccCcchHHHhhhh
Q 010976 205 ------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WN---SPQALNNWGLALQELSAIVPAREKQTI 274 (496)
Q Consensus 205 ------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~---~~~a~~~lg~~l~~~g~~~~A~~~~~~ 274 (496)
.++..||..+.. +.++++|+-...+|.+.-+. +.++ .+ ...+++.++.+|..+|+.
T Consensus 157 D~~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s-~~l~d~~~kyr~~~lyhmaValR~~G~L--------- 222 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNS-YGLKDWSLKYRAMSLYHMAVALRLLGRL--------- 222 (518)
T ss_pred CceeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHh-cCcCchhHHHHHHHHHHHHHHHHHhccc---------
Confidence 467888999988 88888888444444333221 1111 11 245678889999999998
Q ss_pred HHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcchhHH
Q 010976 275 VRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTL 311 (496)
Q Consensus 275 ~~~Ai~~~~~Al~l~------P~~~~a~~~lg~~~~~~g~~~~ 311 (496)
-.|.++.++|.++. +-+.....-+|.+|...|+...
T Consensus 223 -gdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 223 -GDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred -ccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence 89999999988762 4456777888999999997543
No 213
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.64 E-value=8e-05 Score=47.89 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 249 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 249 ~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
+.+|+++|.++..+|++ ++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDY----------EEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHCcCC
Confidence 46899999999999999 99999999999999974
No 214
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.59 E-value=0.00016 Score=46.26 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976 156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 203 (496)
Q Consensus 156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~ 203 (496)
+.+|+.+|.+++.+|+ +++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGN--------------YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCcCC
Confidence 4689999999999999 999999999999999985
No 215
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.011 Score=60.16 Aligned_cols=183 Identities=13% Similarity=0.058 Sum_probs=128.2
Q ss_pred hhcHHHHHHHHHHhhccch-----------------hhh---HhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 010976 111 AEQNNAAMELINSVTGVDE-----------------EGR---SRQRILTFAAKRYANAIERNPED----YDALYNWALVL 166 (496)
Q Consensus 111 ~~~~~~A~~~~~~~l~~~~-----------------~~~---~~~g~~~~Ai~~~~~al~~~P~~----~~a~~~lg~~~ 166 (496)
.|+.+.-.+.|.+++.... .++ ....+.+.+.+.|+.+|.+=|.. +..|...|...
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 3555666667777776541 111 12478899999999999998864 67788888888
Q ss_pred HHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976 167 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 246 (496)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P 246 (496)
..+.+ +..|.+.+-.||..+|.+-- +-..-.+-.. +++++... ..|++-|+..|
T Consensus 415 IRq~~--------------l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElq----L~efDRcR-------kLYEkfle~~P 468 (677)
T KOG1915|consen 415 IRQLN--------------LTGARKILGNAIGKCPKDKL-FKGYIELELQ----LREFDRCR-------KLYEKFLEFSP 468 (677)
T ss_pred HHHcc--------------cHHHHHHHHHHhccCCchhH-HHHHHHHHHH----HhhHHHHH-------HHHHHHHhcCh
Confidence 88888 99999999999999998642 2222222233 45555555 89999999999
Q ss_pred CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HcchhHHhccCCCCCCCCCc
Q 010976 247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY--GLAEDTLRTGGTVNPREVSP 324 (496)
Q Consensus 247 ~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~--~~g~~~~a~~~~~~~~~~~~ 324 (496)
.+..+|...|.+-..+|+. +.|...|+-|+....-+..-+.-.+.+=+ ..|+
T Consensus 469 e~c~~W~kyaElE~~Lgdt----------dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E---------------- 522 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDT----------DRARAIFELAISQPALDMPELLWKAYIDFEIEEGE---------------- 522 (677)
T ss_pred HhhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch----------------
Confidence 9999999999999999999 88888888888765433332222222222 2233
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHH
Q 010976 325 NELYSQSAIYIAAAHALKPSYSVY 348 (496)
Q Consensus 325 ~~~~~~A~~~~~~a~~l~p~~~~y 348 (496)
+..+...|++.+...+...++
T Consensus 523 ---~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 523 ---FEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred ---HHHHHHHHHHHHHhcccchHH
Confidence 666777777777776666643
No 216
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.55 E-value=0.00017 Score=46.15 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 249 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 249 ~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
+.+++.+|.+++.+|++ ++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNY----------EEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCcCC
Confidence 46899999999999999 99999999999999985
No 217
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.55 E-value=0.0083 Score=56.90 Aligned_cols=111 Identities=22% Similarity=0.176 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976 155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW 231 (496)
Q Consensus 155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 231 (496)
.+.-||+-|....+.|+ +++|+..|++....+|.. ..+...++.++++ .+++++|+
T Consensus 33 p~~~LY~~g~~~L~~gn--------------~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~--- 91 (254)
T COG4105 33 PASELYNEGLTELQKGN--------------YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLAL--- 91 (254)
T ss_pred CHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHH---
Confidence 46778999999999999 999999999999998875 4788999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 232 KQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 232 ~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
...++-+.+.|+++ .+++..|.+++..= +.....+....+|+..|+..|..-|+.
T Consensus 92 ----~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i--~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 92 ----AYIDRFIRLYPTHPNADYAYYLKGLSYFFQI--DDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred ----HHHHHHHHhCCCCCChhHHHHHHHHHHhccC--CccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 88999999998765 46777787755432 223445666689999999999999986
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.54 E-value=0.0021 Score=56.42 Aligned_cols=75 Identities=25% Similarity=0.306 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976 156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 235 (496)
Q Consensus 156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~ 235 (496)
..+...++..+...|+ +++|+..+++++.++|.+..+|..+-.+|.. .|+..+|++.|++..
T Consensus 62 ~~~~~~l~~~~~~~~~--------------~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 62 LDALERLAEALLEAGD--------------YEEALRLLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHH
Confidence 4567778888899999 9999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 010976 236 KNYEKAVQLNWNS 248 (496)
Q Consensus 236 ~~~~~Al~l~P~~ 248 (496)
..+.+-+...|..
T Consensus 124 ~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 124 RRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHS----H
T ss_pred HHHHHHhCcCcCH
Confidence 9999888888863
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.50 E-value=0.014 Score=59.04 Aligned_cols=192 Identities=13% Similarity=-0.016 Sum_probs=123.4
Q ss_pred hHhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hcCCCCCCCCCcchhhhHHHHHHHHHHHH-HhCCCC
Q 010976 132 RSRQRILTFAAKRYANAIER----NPEDYDALYNWALVLQE---SADNVSLDSTSPSKDALLEEACKKYDEAT-RLCPTL 203 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~----~P~~~~a~~~lg~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al-~l~P~~ 203 (496)
|....+|+.-+.+.+..-.+ -++.+.+.+.+|.++.+ .|+ .++|+..+..++ ...+.+
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gd--------------re~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGD--------------REKALQILLPVLESDENPD 216 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCC--------------HHHHHHHHHHHHhccCCCC
Confidence 33346777777777776555 45667788888999988 666 999999999954 456779
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHH--HHHH
Q 010976 204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT--AISK 281 (496)
Q Consensus 204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~--Ai~~ 281 (496)
++.+..+|.+|.+++...+..+ .+.+++|+..|.++.+++| +...-.|++.++...|...+.......+.- +.-.
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d--~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll 293 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTD--RESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLL 293 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 9999999999998655433322 2338899999999999996 445556778888888875211111110000 0000
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH---HHHHHHhhhcC
Q 010976 282 FRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV---YSSALRLVRSM 358 (496)
Q Consensus 282 ~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~---y~~al~~~~~~ 358 (496)
-++-..-.-.+...+-.+..+..-.|+ +..+..+++++.++.|.... ....+.+++++
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d-------------------~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li~~~ 354 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGD-------------------YEKAIQAAEKAFKLKPPAWELESTLENIKLIRHF 354 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHH
Confidence 001000112334444555566666666 78899999999999888763 33444455444
Q ss_pred C
Q 010976 359 L 359 (496)
Q Consensus 359 ~ 359 (496)
.
T Consensus 355 ~ 355 (374)
T PF13281_consen 355 R 355 (374)
T ss_pred h
Confidence 4
No 220
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.0037 Score=67.23 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=99.7
Q ss_pred hhcHHHHHHHHHHhhccc--hhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHH
Q 010976 111 AEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEE 188 (496)
Q Consensus 111 ~~~~~~A~~~~~~~l~~~--~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (496)
.|..++|..+|.+....+ +.-+-.+|.+++|.+..+.-=++ ..-..||+.+.-+...++ .+.
T Consensus 813 LgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~D--------------i~~ 876 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRD--------------IEA 876 (1416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhcc--------------HHH
Confidence 455555555555444333 22222334555554443322111 123568899999999998 999
Q ss_pred HHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-------
Q 010976 189 ACKKYDEA----------TRLCPT----------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA------- 241 (496)
Q Consensus 189 A~~~~~~A----------l~l~P~----------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~A------- 241 (496)
|+++|+++ |.-+|. +...|..||..+.. .|+.+.|+..|..|..+|...
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES----~GemdaAl~~Y~~A~D~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES----VGEMDAALSFYSSAKDYFSMVRIKCIQG 952 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc----ccchHHHHHHHHHhhhhhhheeeEeecc
Confidence 99999875 222443 45678889999999 999999999999988877542
Q ss_pred -------HhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976 242 -------VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 242 -------l~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l 288 (496)
|.....+-.+.+.||..|...|+. .+|+..|.+|-.+
T Consensus 953 k~~kAa~iA~esgd~AAcYhlaR~YEn~g~v----------~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 953 KTDKAARIAEESGDKAACYHLARMYENDGDV----------VKAVKFFTRAQAF 996 (1416)
T ss_pred CchHHHHHHHhcccHHHHHHHHHHhhhhHHH----------HHHHHHHHHHHHH
Confidence 233456777888888888888888 9999988886543
No 221
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.37 E-value=0.005 Score=66.99 Aligned_cols=106 Identities=20% Similarity=0.079 Sum_probs=97.0
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 213 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 213 (496)
..+++.+|+....+.++..|+..-+....|.++.++|+ .++|..+++..-...+++-..+-.+-.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk--------------~~ea~~~Le~~~~~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK--------------GDEALKLLEALYGLKGTDDLTLQFLQNV 86 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC--------------chhHHHHHhhhccCCCCchHHHHHHHHH
Confidence 35788999999999999999999999999999999999 9999988888888888888999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
|.+ ++++++|. .+|+++++.+|+ .+.+..+=.+|.+-+.|
T Consensus 87 y~d----~~~~d~~~-------~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 87 YRD----LGKLDEAV-------HLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHH----HhhhhHHH-------HHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 999 99999999 899999999999 88888888888888887
No 222
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0091 Score=56.48 Aligned_cols=183 Identities=12% Similarity=0.084 Sum_probs=146.5
Q ss_pred hhhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHH
Q 010976 110 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA 189 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A 189 (496)
...++...++++..++..+ ..-..|+.+-..+|.++|.+..+|.-+-.++..++. ++.+-
T Consensus 38 Yte~fr~~m~YfRAI~~~~-------E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-------------dL~~E 97 (318)
T KOG0530|consen 38 YTEDFRDVMDYFRAIIAKN-------EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-------------DLNKE 97 (318)
T ss_pred echhHHHHHHHHHHHHhcc-------ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-------------HHHHH
Confidence 4567788888888777666 444679999999999999999999999999888775 38888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH
Q 010976 190 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK-EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 268 (496)
Q Consensus 190 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~-eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A 268 (496)
++++.+.++-+|.|..+|..+-.+... .|+.. .-+ +..+..+..+.+|.-+|...-.++...+.+
T Consensus 98 l~~l~eI~e~npKNYQvWHHRr~ive~----l~d~s~rEL-------ef~~~~l~~DaKNYHaWshRqW~~r~F~~~--- 163 (318)
T KOG0530|consen 98 LEYLDEIIEDNPKNYQVWHHRRVIVEL----LGDPSFREL-------EFTKLMLDDDAKNYHAWSHRQWVLRFFKDY--- 163 (318)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHH----hcCcccchH-------HHHHHHHhccccchhhhHHHHHHHHHHhhH---
Confidence 999999999999999999998888887 88877 566 788999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 269 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 269 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
+.-+.+..+.|+.+-.|-.+|+..-.+..... ...+....+.-..|....+.+.|++.
T Consensus 164 -------~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~-------------~~~~~~~le~El~yt~~~I~~vP~Ne 221 (318)
T KOG0530|consen 164 -------EDELAYADELLEEDIRNNSAWNQRYFVITNTK-------------GVISKAELERELNYTKDKILLVPNNE 221 (318)
T ss_pred -------HHHHHHHHHHHHHhhhccchhheeeEEEEecc-------------CCccHHHHHHHHHHHHHHHHhCCCCc
Confidence 89999999999988777777665443332211 12222335566677778888888887
No 223
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.33 E-value=0.0071 Score=50.23 Aligned_cols=91 Identities=21% Similarity=0.219 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-
Q 010976 184 ALLEEACKKYDEATRLCPT------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ- 250 (496)
Q Consensus 184 ~~~~~A~~~~~~Al~l~P~------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~- 250 (496)
+.|++|...|++|+...-+ ++-++-.|+.++.. +|+|++++..-+.|+.+|.+-=+++.+...
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 4499999999999998432 23467788889999 999999999999999999999999987655
Q ss_pred ---HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976 251 ---ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 251 ---a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l 288 (496)
+-++.+.++..+|+. ++|+..|+.+-+.
T Consensus 99 WIaaVfsra~Al~~~Gr~----------~eA~~~fr~agEM 129 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRK----------EEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHH
Confidence 457889999999999 9999999998664
No 224
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.29 E-value=0.0057 Score=60.14 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=100.2
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 213 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 213 (496)
.+..+.|...|.+|++..+....+|...|.+-+.. ++ .+.|.+.|+++++..|.+...|......
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d--------------~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKD--------------PKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS---------------HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34578999999999966666789999999997774 55 7779999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976 214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 290 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P 290 (496)
+.. .++.+.|. ..|++++..-|... ..|..+...-...|+. +.....++++.++-|
T Consensus 80 l~~----~~d~~~aR-------~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl----------~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 80 LIK----LNDINNAR-------ALFERAISSLPKEKQSKKIWKKFIEFESKYGDL----------ESVRKVEKRAEELFP 138 (280)
T ss_dssp HHH----TT-HHHHH-------HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H----------HHHHHHHHHHHHHTT
T ss_pred HHH----hCcHHHHH-------HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhh
Confidence 988 99999999 78888887766544 5677777777777777 999999999999988
Q ss_pred CCHH
Q 010976 291 DFHR 294 (496)
Q Consensus 291 ~~~~ 294 (496)
+...
T Consensus 139 ~~~~ 142 (280)
T PF05843_consen 139 EDNS 142 (280)
T ss_dssp TS-H
T ss_pred hhhH
Confidence 8543
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.27 E-value=0.019 Score=58.15 Aligned_cols=174 Identities=13% Similarity=0.014 Sum_probs=114.2
Q ss_pred hhhhhcHHHHHHHHHHhhccc--------------hhhhHh---hccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHh
Q 010976 108 HQLAEQNNAAMELINSVTGVD--------------EEGRSR---QRILTFAAKRYAN-AIERNPEDYDALYNWALVLQES 169 (496)
Q Consensus 108 ~~~~~~~~~A~~~~~~~l~~~--------------~~~~~~---~g~~~~Ai~~~~~-al~~~P~~~~a~~~lg~~~~~~ 169 (496)
++...+++..+.+++..-... +.++.+ .|+.++|+..+.. .....+.+++.+..+|.+|..+
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 345667777777776555441 233444 7999999999999 5566688999999999999876
Q ss_pred cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-----hc
Q 010976 170 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-----QL 244 (496)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al-----~l 244 (496)
-.. ........+++|+..|.++.+++|+. ..=.|++.++.- .|...+.....++-...+...+ .-
T Consensus 231 ~~~-----s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~----~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 231 FLE-----SNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLML----AGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHH-----cCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHH----cCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 430 11123334999999999999999754 334566666666 6764444422222211111111 11
Q ss_pred CCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010976 245 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 301 (496)
Q Consensus 245 ~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~ 301 (496)
.-.+...+-.++.+..-.|++ ++|+.++++++++.|........+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~----------~ka~~a~e~~~~l~~~~W~l~St~~n 347 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDY----------EKAIQAAEKAFKLKPPAWELESTLEN 347 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhhcCCcchhHHHHHHH
Confidence 223455566677777778888 99999999999998887654444443
No 226
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0048 Score=60.18 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=78.8
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 204 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~ 204 (496)
+.-+++..+|..|+..|.+.|+..-.+ +..|.|++.+.+.+|+ |..|+..+.+|+.++|.+.
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N--------------yRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN--------------YRSALNDCSAALKLKPTHL 153 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH--------------HHHHHHHHHHHHhcCcchh
Confidence 334667899999999999999987554 4568899999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010976 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245 (496)
Q Consensus 205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~ 245 (496)
.+++.=+.|+.. +.++++|. ..++..++++
T Consensus 154 Ka~~R~Akc~~e----Le~~~~a~-------nw~ee~~~~d 183 (390)
T KOG0551|consen 154 KAYIRGAKCLLE----LERFAEAV-------NWCEEGLQID 183 (390)
T ss_pred hhhhhhhHHHHH----HHHHHHHH-------HHHhhhhhhh
Confidence 999999999999 88888888 6666655443
No 227
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.25 E-value=0.029 Score=63.96 Aligned_cols=163 Identities=7% Similarity=-0.040 Sum_probs=119.9
Q ss_pred hhhcHHHHHHHHHHhhccch-----------hhhH----hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Q 010976 110 LAEQNNAAMELINSVTGVDE-----------EGRS----RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS 174 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~~-----------~~~~----~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 174 (496)
+.++.+.|...+++++...+ -++. .-|.-+.-.+.|++|.+.+ +-...|..|..+|...++
T Consensus 1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek--- 1545 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEK--- 1545 (1710)
T ss_pred hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhc---
Confidence 56777777777777776651 0111 1143444556677776665 234567778888888888
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHH
Q 010976 175 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQAL 252 (496)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~ 252 (496)
+++|.++|+..++-.-+....|..+|..+.. +.+-+.|. ..+.+|++.-|. +.+..
T Consensus 1546 -----------~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~-------~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1546 -----------NDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAAR-------ELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred -----------chhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHH-------HHHHHHHhhcchhhhHHHH
Confidence 8888888888888877788888888888887 77777777 666677766666 77777
Q ss_pred HHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 253 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 253 ~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
...+.+-++.|+. +.+...|+-.+.-.|.-.+.|.-+...-.+.|.
T Consensus 1604 skfAqLEFk~GDa----------eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDA----------ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred HHHHHHHhhcCCc----------hhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence 7888888888888 888888888888888888888877776666665
No 228
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.24 E-value=0.014 Score=57.60 Aligned_cols=146 Identities=27% Similarity=0.220 Sum_probs=106.8
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-HDAFYNWAIA 213 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~ 213 (496)
..+..+|+..|+.+ .+..++.+.++||.+|..-.- ...++.+|.+.|++|....-.. ..+.+++|.+
T Consensus 90 ~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~g----------v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~ 157 (292)
T COG0790 90 SRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRG----------VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLA 157 (292)
T ss_pred cccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCC----------cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 36789999999955 455688999999999987220 1113999999999999874333 3458899998
Q ss_pred HHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 214 ISDRAKMRGRTKEAE-ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~-~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
|.. |....+. ....+|+..|.++-... ++.+.+++|.+|..-.- -..++.+|+.+|.+|.+...
T Consensus 158 ~~~-----g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G------v~~d~~~A~~wy~~Aa~~g~-- 222 (292)
T COG0790 158 YLS-----GLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG------VPRDLKKAFRWYKKAAEQGD-- 222 (292)
T ss_pred HHc-----ChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC------CCcCHHHHHHHHHHHHHCCC--
Confidence 875 3222122 22346778888887775 89999999988865411 12355999999999999877
Q ss_pred HHHHHHHHHHHHHcch
Q 010976 293 HRAIYNLGTVLYGLAE 308 (496)
Q Consensus 293 ~~a~~~lg~~~~~~g~ 308 (496)
..++++++ +++..|.
T Consensus 223 ~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 223 GAACYNLG-LMYLNGE 237 (292)
T ss_pred HHHHHHHH-HHHhcCC
Confidence 89999999 7777773
No 229
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.23 E-value=0.0074 Score=65.72 Aligned_cols=102 Identities=18% Similarity=0.099 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976 185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264 (496)
Q Consensus 185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 264 (496)
+|.+|.+...+.++..|+...+...-|..+.+ +|+.++|. .+++..-...+++...+--+-.+|..+|+
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r----~gk~~ea~-------~~Le~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFR----LGKGDEAL-------KLLEALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----hcCchhHH-------HHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence 39999999999999999999999999999999 99999999 67776667778899999999999999999
Q ss_pred cchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 265 ~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
+ ++|..+|++++..+|+ -...+.+=.+|.+.+.
T Consensus 93 ~----------d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 93 L----------DEAVHLYERANQKYPS-EELLYHLFMAYVREKS 125 (932)
T ss_pred h----------hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence 9 9999999999999999 7888888888887776
No 230
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=0.03 Score=57.21 Aligned_cols=179 Identities=14% Similarity=0.178 Sum_probs=102.4
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
++++..|...|++||..+-.+...|...+.+-++... ...|...+++|+.+-|.--..||..-.+-
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~--------------vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ--------------VNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh--------------HhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 5666677777777777777777777777666666666 66677777777777776666666655555
Q ss_pred HHHHHHcCCHHHHHHHH--------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH
Q 010976 215 SDRAKMRGRTKEAEELW--------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 268 (496)
Q Consensus 215 ~~~~~~~g~~~eA~~~~--------------------------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A 268 (496)
-. +|+..-|.+.| +.|...|++-+-..| ....|...+..-.+.|+.
T Consensus 152 E~----LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~--- 223 (677)
T KOG1915|consen 152 EM----LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNV--- 223 (677)
T ss_pred HH----hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcH---
Confidence 44 66666666322 113355555555554 344455555555555555
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH-
Q 010976 269 REKQTIVRTAISKFRAAIQLQFDFH-RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS- 346 (496)
Q Consensus 269 ~~~~~~~~~Ai~~~~~Al~l~P~~~-~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~- 346 (496)
.-|...|.+|+..-.++. ....-.+.+.+..++.. |..|...|.-|+..-|...
T Consensus 224 -------~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE-----------------~ERar~iykyAld~~pk~ra 279 (677)
T KOG1915|consen 224 -------ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKE-----------------YERARFIYKYALDHIPKGRA 279 (677)
T ss_pred -------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhcCcccH
Confidence 777777777776544332 22233334444333211 5666666777777666553
Q ss_pred --HHHHHHHhhhcCC
Q 010976 347 --VYSSALRLVRSML 359 (496)
Q Consensus 347 --~y~~al~~~~~~~ 359 (496)
.|..-...-+++.
T Consensus 280 eeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFG 294 (677)
T ss_pred HHHHHHHHHHHHHhc
Confidence 3444444333333
No 231
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.09 E-value=0.015 Score=57.20 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 010976 158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWKQATK 236 (496)
Q Consensus 158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~~A~~ 236 (496)
+|..+.....+.+. .+.|...|.+|++..+....+|...|.+-+. .+ +.+.|. .
T Consensus 3 v~i~~m~~~~r~~g--------------~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~----~~~d~~~A~-------~ 57 (280)
T PF05843_consen 3 VWIQYMRFMRRTEG--------------IEAARKVFKRARKDKRCTYHVYVAYALMEYY----CNKDPKRAR-------K 57 (280)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHCCCCS-THHHHHHHHHHHH----TCS-HHHHH-------H
T ss_pred HHHHHHHHHHHhCC--------------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCCHHHHH-------H
Confidence 56667777777777 9999999999997666678899988888555 54 444488 7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcchhHHhc
Q 010976 237 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAEDTLRT 313 (496)
Q Consensus 237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~~~lg~~~~~~g~~~~a~ 313 (496)
.|+.+++.-|.+...|......+...|+. +.|...|++++..-|... .+|......-...|+
T Consensus 58 Ife~glk~f~~~~~~~~~Y~~~l~~~~d~----------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd----- 122 (280)
T PF05843_consen 58 IFERGLKKFPSDPDFWLEYLDFLIKLNDI----------NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD----- 122 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC-----
Confidence 88888888899999999999999999999 999999999999866654 466666666666675
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHH
Q 010976 314 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 349 (496)
Q Consensus 314 ~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~ 349 (496)
+......+.++.++-|......
T Consensus 123 --------------l~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 123 --------------LESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp --------------HHHHHHHHHHHHHHTTTS-HHH
T ss_pred --------------HHHHHHHHHHHHHHhhhhhHHH
Confidence 5566666777777777644333
No 232
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.08 E-value=0.00021 Score=69.68 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
++.|++.|.++|.++|..+..|..++.++.. +++...|+ ..|..|+++||+...-|-..|.+...+|++
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~ai-------rD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAI-------RDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeee----ccCCchhh-------hhhhhhhccCcccccccchhhHHHHHhhch
Confidence 9999999999999999999999999999999 99999999 899999999999999999999999999999
Q ss_pred chHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 266 VPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
.+|-..++.|.+++-+
T Consensus 199 ----------e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 ----------EEAAHDLALACKLDYD 214 (377)
T ss_pred ----------HHHHHHHHHHHhcccc
Confidence 9999999999998755
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.08 E-value=0.0029 Score=62.22 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=96.8
Q ss_pred hhHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC--
Q 010976 131 GRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-- 202 (496)
Q Consensus 131 ~~~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-- 202 (496)
+...++.|+++++.|+.|+++.-++ ..++..||.++..+.+ +++|..+..+|.++--+
T Consensus 131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D--------------~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD--------------YEKALFFPCKAAELVNSYG 196 (518)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh--------------hhHHhhhhHhHHHHHHhcC
Confidence 3445688999999999999886443 3467899999999999 99999999999998332
Q ss_pred --------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCcchHHHhh
Q 010976 203 --------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQ 272 (496)
Q Consensus 203 --------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~A~~~~ 272 (496)
...++|.++.++.. +|+.-.|.++.++|.+. +++. .+-+.....-+|.+|...|+.
T Consensus 197 l~d~~~kyr~~~lyhmaValR~----~G~LgdA~e~C~Ea~kl---al~~Gdra~~arc~~~~aDIyR~~gd~------- 262 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRL----LGRLGDAMECCEEAMKL---ALQHGDRALQARCLLCFADIYRSRGDL------- 262 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHH----hcccccHHHHHHHHHHH---HHHhCChHHHHHHHHHHHHHHHhcccH-------
Confidence 23467888888888 99999999544443332 1111 133566778899999999999
Q ss_pred hhHHHHHHHHHHHHHhc
Q 010976 273 TIVRTAISKFRAAIQLQ 289 (496)
Q Consensus 273 ~~~~~Ai~~~~~Al~l~ 289 (496)
+.|..-|++|....
T Consensus 263 ---e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 263 ---ERAFRRYEQAMGTM 276 (518)
T ss_pred ---hHHHHHHHHHHHHH
Confidence 88888888887653
No 234
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.08 E-value=0.033 Score=56.25 Aligned_cols=170 Identities=15% Similarity=0.134 Sum_probs=117.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHcCCHHHH
Q 010976 152 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEA 227 (496)
Q Consensus 152 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~~~~~~~~~g~~~eA 227 (496)
.......|...+.+..+.|. ++.|...+.++...++. .+.+.+..+..+.. .|+..+|
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~--------------~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~----~g~~~~A 203 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGN--------------FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA----QGEQEEA 203 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH----cCCHHHH
Confidence 34556778888899999999 99999999999987632 46677777888888 9999999
Q ss_pred HHHHHHHHH-HHHHHHhcC-----------------CC--CHHHHHHHHHHHHHccCcchHHHhh------hhHHHHHHH
Q 010976 228 EELWKQATK-NYEKAVQLN-----------------WN--SPQALNNWGLALQELSAIVPAREKQ------TIVRTAISK 281 (496)
Q Consensus 228 ~~~~~~A~~-~~~~Al~l~-----------------P~--~~~a~~~lg~~l~~~g~~~~A~~~~------~~~~~Ai~~ 281 (496)
+..++..+. .+..-+... +. ...-.-..+.++..+|++ .... +..++++..
T Consensus 204 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w---~~~~~~~~~~~~~~~~~~~ 280 (352)
T PF02259_consen 204 IQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKW---LDELYSKLSSESSDEILKY 280 (352)
T ss_pred HHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHH---HHhhccccccccHHHHHHH
Confidence 977766666 333221100 00 222233445555555555 3333 566999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976 282 FRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 344 (496)
Q Consensus 282 ~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 344 (496)
|+++++++|....+|+.+|..+...-+.......... .....++...++.+|-+++.+.+.
T Consensus 281 ~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 281 YKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESS--QEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccc--hhHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999998877653321111000 012344667899999999999888
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.019 Score=55.52 Aligned_cols=137 Identities=15% Similarity=0.070 Sum_probs=96.8
Q ss_pred hhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH--HHH
Q 010976 131 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--AFY 208 (496)
Q Consensus 131 ~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~--a~~ 208 (496)
.....|++.+|...|..++...|++.++...++.+|...|+ .+.|...+.. .|.... .+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~--------------~e~A~~iL~~----lP~~~~~~~~~ 204 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGD--------------VEAAQAILAA----LPLQAQDKAAH 204 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC--------------hHHHHHHHHh----CcccchhhHHH
Confidence 34557999999999999999999999999999999999999 8887766654 343221 111
Q ss_pred H---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976 209 N---WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 285 (496)
Q Consensus 209 ~---lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A 285 (496)
. .-..+.. .....+. ..+++.+..||++.++.+.++..|...|+. ++|.+.+-..
T Consensus 205 ~l~a~i~ll~q----aa~~~~~--------~~l~~~~aadPdd~~aa~~lA~~~~~~g~~----------e~Ale~Ll~~ 262 (304)
T COG3118 205 GLQAQIELLEQ----AAATPEI--------QDLQRRLAADPDDVEAALALADQLHLVGRN----------EAALEHLLAL 262 (304)
T ss_pred HHHHHHHHHHH----HhcCCCH--------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence 1 1111222 2222332 366778889999999999999999999999 9999888887
Q ss_pred HHhcCC--CHHHHHHHHHHHHHcc
Q 010976 286 IQLQFD--FHRAIYNLGTVLYGLA 307 (496)
Q Consensus 286 l~l~P~--~~~a~~~lg~~~~~~g 307 (496)
++.+-. +..+...|-.++.-.|
T Consensus 263 l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 263 LRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHhcccccCcHHHHHHHHHHHhcC
Confidence 776543 3344444444443333
No 236
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.04 E-value=0.19 Score=50.43 Aligned_cols=91 Identities=20% Similarity=0.004 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------------
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ-------------------------------- 233 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~-------------------------------- 233 (496)
.+.|+.+-+++-...|.-..++...-...+. .|+++.|+++.++
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~----~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCA----AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHh----cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 6666666666666666665555554445555 6666666655432
Q ss_pred --HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC
Q 010976 234 --ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 290 (496)
Q Consensus 234 --A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P 290 (496)
|...-.+++++.|+...+-..-+.+|++.|+. .++-..++.+.+..|
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~----------rKg~~ilE~aWK~eP 294 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNL----------RKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccch----------hhhhhHHHHHHhcCC
Confidence 55778889999999999999999999999998 555555555555444
No 237
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=96.99 E-value=0.0014 Score=53.62 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=54.7
Q ss_pred hhhhhhhccccchh--hhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC-C----CCCeeeEee
Q 010976 381 HSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL-P----PGAGLCIET 453 (496)
Q Consensus 381 ~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~ 453 (496)
...|.++||+|... .|........ ......|+|..+.++..+.+... | +...|.+.|
T Consensus 12 ~k~WkkRwFvL~~~~~~L~Yy~~~~~----------------~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t 75 (101)
T cd01235 12 LKGWKPRWFVLDPDKHQLRYYDDFED----------------TAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKT 75 (101)
T ss_pred CCCccceEEEEECCCCEEEEecCCCC----------------CccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEe
Confidence 45899999999743 4444332211 12345788888888876443211 1 344577776
Q ss_pred cCCceeeeecChhhhhhHHHHHHHH
Q 010976 454 IHGPVFLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~a~~~~ 478 (496)
..-..||.|+|.++++.|++||+.+
T Consensus 76 ~~r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 76 SKRTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred CCceEEEECCCHHHHHHHHHHHHhh
Confidence 5544588899999999999999864
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.99 E-value=0.024 Score=49.69 Aligned_cols=81 Identities=23% Similarity=0.153 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 010976 186 LEEACKKYDEATRLCPTL----------------------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 243 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~----------------------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~ 243 (496)
.+.++..+++++.+.... ..+...++..+.. .|++++|+ ..+++++.
T Consensus 22 ~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~----~~~~~~a~-------~~~~~~l~ 90 (146)
T PF03704_consen 22 PEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE----AGDYEEAL-------RLLQRALA 90 (146)
T ss_dssp HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHH-------HHHHHHHh
Confidence 888888888888873221 1233444455555 88888888 89999999
Q ss_pred cCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976 244 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 287 (496)
Q Consensus 244 l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~ 287 (496)
.+|.+-.++..+-.+|...|+. .+|+..|++..+
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~----------~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRR----------AEALRVYERYRR 124 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHH
Confidence 9999999999999999999999 999999888754
No 239
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=96.99 E-value=0.0017 Score=54.09 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=59.1
Q ss_pred hccccCCCCCCCCCChhhhhhhccccchhhh-------hhhccccccccccccCCCCCCCCCCCceeeeecCceeecccc
Q 010976 366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGL-------QQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSAC 438 (496)
Q Consensus 366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (496)
.|+|...++.... ....|+++||+|....+ ..+-.. . .......|+|..+..++..
T Consensus 2 eGwL~K~~~~~~~-~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~-~---------------~~k~~g~I~L~~~~~v~~~ 64 (108)
T cd01266 2 EGWLKKSPPYKLL-FRTKWVRRYFVLHCGDRERNLFALEYYKTS-R---------------KFKLEFVIDLESCSQVDPG 64 (108)
T ss_pred ceeeeeCCccccc-cccCcEEEEEEEeccccCCCcceEEEECCC-C---------------CCccceEEECCccEEEccc
Confidence 3566554332211 23589999999986554 222111 0 1234567888876665432
Q ss_pred cCC---CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010976 439 ADL---TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 439 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 478 (496)
... .-+..+.|.+.|..-..||.|+|.++++.|+++|+.+
T Consensus 65 ~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 65 LLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred ccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 111 1123567888876555699999999999999999764
No 240
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.93 E-value=0.014 Score=48.19 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=78.5
Q ss_pred hhHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010976 131 GRSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 207 (496)
Q Consensus 131 ~~~~~g~~~~Ai~~~~~al~~~P~~~---~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~ 207 (496)
.++..|++-+|++..+..+...+++. ..+..-|.++..++. ...+...+...+-.++++|.++..+.|..+..+
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~---~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAK---KTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHH---hccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 45678999999999999999998877 556677999988877 333445566678899999999999999998888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc
Q 010976 208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 244 (496)
Q Consensus 208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l 244 (496)
+.+|.-+.. ...|++++.-.+++|..
T Consensus 82 ~~la~~l~s-----------~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGS-----------VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhh-----------HHHHHHHHHHHHHHhcc
Confidence 887776654 55555555777777754
No 241
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.92 E-value=0.046 Score=59.22 Aligned_cols=90 Identities=18% Similarity=0.297 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHhcCC----------CCHHHHHHHHHHHHHccCcchHH
Q 010976 204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQA----TKNYEKAVQLNW----------NSPQALNNWGLALQELSAIVPAR 269 (496)
Q Consensus 204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A----~~~~~~Al~l~P----------~~~~a~~~lg~~l~~~g~~~~A~ 269 (496)
-..||+.+.-+.. .++.+.|+++|+++ .+.++. |.-+| .+...|..+|.-+...|+.
T Consensus 858 r~Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~rm-L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem---- 928 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFRM-LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM---- 928 (1416)
T ss_pred hhhHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHHH-HHhChHHHHHHHHhccchHHHHHHHHHHhcccch----
Confidence 3568888888888 89999999888773 333322 22233 2456677777777777777
Q ss_pred HhhhhHHHHHHHHHHHHHh---------------------cCCCHHHHHHHHHHHHHcch
Q 010976 270 EKQTIVRTAISKFRAAIQL---------------------QFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 270 ~~~~~~~~Ai~~~~~Al~l---------------------~P~~~~a~~~lg~~~~~~g~ 308 (496)
+.|+.+|..|-.. ...+-.+.|.||.-|-+.|+
T Consensus 929 ------daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 929 ------DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred ------HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence 7777777765332 34667788888888888887
No 242
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.89 E-value=0.02 Score=47.28 Aligned_cols=103 Identities=12% Similarity=0.014 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976 162 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 238 (496)
Q Consensus 162 lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~ 238 (496)
++.-++..|+ +-+|++..+..+..++++. ..+..-|.++..++....+.+--..++.-++++|
T Consensus 2 ~A~~~~~rGn--------------hiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~ 67 (111)
T PF04781_consen 2 KAKDYFARGN--------------HIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECF 67 (111)
T ss_pred hHHHHHHccC--------------HHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHH
Confidence 4566778888 9999999999999988876 5667778888887777777777778888999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976 239 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 239 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l 288 (496)
.++..+.|..+..++.+|.-+.....| ++++...+++|.+
T Consensus 68 s~a~~Lsp~~A~~L~~la~~l~s~~~Y----------kk~v~kak~~Lsv 107 (111)
T PF04781_consen 68 SRAVELSPDSAHSLFELASQLGSVKYY----------KKAVKKAKRGLSV 107 (111)
T ss_pred HHHhccChhHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHhcc
Confidence 999999999988888888876666666 8888888888875
No 243
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=96.89 E-value=0.0017 Score=53.20 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=45.1
Q ss_pred CceeeeecCceeecccccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHH
Q 010976 422 RRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIR 476 (496)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 476 (496)
.+...|+|.+..+|....|.. .+++|.|.|.+...+|+|+|.++.+.|+++|.
T Consensus 47 ~p~~vI~L~~c~~v~~~~d~k--~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~ 99 (101)
T cd01257 47 APKRVIPLESCFNINKRADAK--HRHLIALYTRDEYFAVAAENEAEQDSWYQALL 99 (101)
T ss_pred CceEEEEccceEEEeeccccc--cCeEEEEEeCCceEEEEeCCHHHHHHHHHHHh
Confidence 457789999999988766632 46999999988877999999999999999995
No 244
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.89 E-value=0.0018 Score=41.36 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 250 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
.+|+.+|.+|..+|++ ++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~----------~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDY----------EEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence 5789999999999999 99999999999999964
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.029 Score=54.96 Aligned_cols=112 Identities=14% Similarity=0.007 Sum_probs=88.2
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-CCCCH---HHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTLH---DAF 207 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~P~~~---~a~ 207 (496)
....|++-+|...+++.+.-.|.+.-++..--.+++.+|+ ...-...+++.+-. +|+.+ ...
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~--------------~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN--------------QIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc--------------hhhhhhHHHHhccccCCCCcHHHHHH
Confidence 3446889999999999999999999888888888888888 77777778888776 66653 333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH
Q 010976 208 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 268 (496)
Q Consensus 208 ~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A 268 (496)
-.++..+.. .|-|++|. +.-++++++|+.+..+...++.++...|++.++
T Consensus 179 GmyaFgL~E----~g~y~dAE-------k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg 228 (491)
T KOG2610|consen 179 GMYAFGLEE----CGIYDDAE-------KQADRALQINRFDCWASHAKAHVLEMNGRHKEG 228 (491)
T ss_pred HHHHhhHHH----hccchhHH-------HHHHhhccCCCcchHHHHHHHHHHHhcchhhhH
Confidence 445555666 78888887 788888888888888888888888888888443
No 246
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=96.88 E-value=0.0013 Score=53.97 Aligned_cols=93 Identities=23% Similarity=0.308 Sum_probs=61.3
Q ss_pred hhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC-C
Q 010976 365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT-L 443 (496)
Q Consensus 365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 443 (496)
+.|+|..... ....|.++||+|....|........ ......|+|.+ ++|+...+.. .
T Consensus 4 k~G~L~Kkg~-----~~k~WkkRwfvL~~~~L~yyk~~~~----------------~~~~~~I~L~~-~~v~~~~~~~~~ 61 (100)
T cd01233 4 KKGYLNFPEE-----TNSGWTRRFVVVRRPYLHIYRSDKD----------------PVERGVINLST-ARVEHSEDQAAM 61 (100)
T ss_pred eeEEEEeeCC-----CCCCcEEEEEEEECCEEEEEccCCC----------------ccEeeEEEecc-cEEEEccchhhh
Confidence 4577766532 2358999999998776665433221 12245677774 3455444321 1
Q ss_pred C-CCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976 444 P-PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY 479 (496)
Q Consensus 444 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 479 (496)
+ ....|.|.|..-..||.|+|.+++.+|.+||.-+|
T Consensus 62 ~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 62 VKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred cCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 1 33578888776667999999999999999998776
No 247
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.86 E-value=0.002 Score=41.18 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 203 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~ 203 (496)
.+|+.+|.+|..+|+ +++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~--------------~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGD--------------YEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTS--------------HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Confidence 679999999999999 999999999999999953
No 248
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.86 E-value=0.0032 Score=60.69 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=62.6
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
.+.|+.++|...|+.|++++|++++++..+|......++ .-+|-.+|-+|+.++|.+.+++.|+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~--------------iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE--------------IVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh--------------hHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 457999999999999999999999999999999999888 999999999999999999999998764
Q ss_pred H
Q 010976 213 A 213 (496)
Q Consensus 213 ~ 213 (496)
.
T Consensus 193 T 193 (472)
T KOG3824|consen 193 T 193 (472)
T ss_pred c
Confidence 4
No 249
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.86 E-value=0.067 Score=61.15 Aligned_cols=140 Identities=10% Similarity=0.006 Sum_probs=123.1
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC--CHHHHHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYN 209 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~--~~~a~~~ 209 (496)
|.+.+.+++|.++|+.-++..-+....|..+|..++..++ -++|...+.+||+.-|. +......
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne--------------~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE--------------AEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH--------------HHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 4456889999999999999998999999999999999999 99999999999999998 7788888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh-
Q 010976 210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL- 288 (496)
Q Consensus 210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l- 288 (496)
.+.+.+. .|+.+.+. ..|+..+.-+|.-...|+-+...-.+.|.. +.....|++++.+
T Consensus 1606 fAqLEFk----~GDaeRGR-------tlfEgll~ayPKRtDlW~VYid~eik~~~~----------~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1606 FAQLEFK----YGDAERGR-------TLFEGLLSAYPKRTDLWSVYIDMEIKHGDI----------KYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHhh----cCCchhhH-------HHHHHHHhhCccchhHHHHHHHHHHccCCH----------HHHHHHHHHHHhcC
Confidence 8999999 99999999 899999999999999999999998888888 9999999999987
Q ss_pred -cCCCHHHHHHHHHHHHHc
Q 010976 289 -QFDFHRAIYNLGTVLYGL 306 (496)
Q Consensus 289 -~P~~~~a~~~lg~~~~~~ 306 (496)
.|....-+|..-.-|-+.
T Consensus 1665 l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1665 LSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred CChhHhHHHHHHHHHHHHh
Confidence 466666666665555443
No 250
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.82 E-value=0.096 Score=55.52 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=119.9
Q ss_pred hHhhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH--
Q 010976 132 RSRQRILTFAAKRYANAIERNPE----DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD-- 205 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~----~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~-- 205 (496)
+...|+++.|...|++++..+=. -..+|.++|..-....+ ++.|.++.++|... |....
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~--------------~~~Al~lm~~A~~v-P~~~~~~ 461 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN--------------FEAALKLMRRATHV-PTNPELE 461 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHhhhcC-CCchhhh
Confidence 44569999999999999987632 36789999988888888 99999999999876 22211
Q ss_pred -------HH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhH
Q 010976 206 -------AF---YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV 275 (496)
Q Consensus 206 -------a~---~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~ 275 (496)
+. ++--.+... .-+++++...|+.....|++.+.+.--.|+.-.|.|..+.+..-+
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~----y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf---------- 527 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSM----YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF---------- 527 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHH----HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH----------
Confidence 11 111122222 567778888888888999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHH-HcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976 276 RTAISKFRAAIQLQ--FDFHRAIYNLGTVLY-GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 344 (496)
Q Consensus 276 ~~Ai~~~~~Al~l~--P~~~~a~~~lg~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 344 (496)
++|.+.|++-+.+- |.-.++|+..-.... +.|.. ....|...|++|+..-|.
T Consensus 528 eesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~-----------------klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT-----------------KLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC-----------------CHHHHHHHHHHHHhcCCH
Confidence 89999999988874 444455554333222 22210 046677777777777764
No 251
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.75 E-value=0.042 Score=59.38 Aligned_cols=142 Identities=19% Similarity=0.125 Sum_probs=106.1
Q ss_pred hccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhh-hHHHHHHHHHHHHHhCCCCHHHHH
Q 010976 135 QRILTFAAKRYANAIER-----NPEDYDALYNWALVLQESADNVSLDSTSPSKDA-LLEEACKKYDEATRLCPTLHDAFY 208 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~-----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~Al~l~P~~~~a~~ 208 (496)
..+.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+..- ... +++.|+.+|.++-.+ +++.+.+
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~----------~~~~d~~~A~~~~~~aA~~--g~~~a~~ 329 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG----------VEKIDYEKALKLYTKAAEL--GNPDAQY 329 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC----------CccccHHHHHHHHHHHHhc--CCchHHH
Confidence 47999999999999771 11256688999999988542 000 388999999999877 4667889
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976 209 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l 288 (496)
.+|.++.. .. -.+++.+|..+|..|... .+..+.++++.+|..-.-. ..+...|..+|.+|.+.
T Consensus 330 ~lg~~~~~----g~----~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv------~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 330 LLGVLYET----GT----KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGV------ERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHc----CC----ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCc------CCCHHHHHHHHHHHHHc
Confidence 99999976 33 334556666899888765 5899999999998765222 34569999999999998
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 010976 289 QFDFHRAIYNLGTVLYGL 306 (496)
Q Consensus 289 ~P~~~~a~~~lg~~~~~~ 306 (496)
+ ++.+.+.++..+..-
T Consensus 394 g--~~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 394 G--NPSAAYLLGAFYEYG 409 (552)
T ss_pred c--ChhhHHHHHHHHHHc
Confidence 7 667777777665543
No 252
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=96.72 E-value=0.0033 Score=51.91 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=51.7
Q ss_pred hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCcee---ecccccCCC-CC-CCCeeeEeecCC
Q 010976 382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIV---SVSACADLT-LP-PGAGLCIETIHG 456 (496)
Q Consensus 382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~-~~~~~~~~~~~~ 456 (496)
..|+++||+|....|..+...... ...-.|+|..+. +|......+ -. ..++|.|.|..-
T Consensus 14 k~wkkRwFvL~~~~L~Yyk~~~d~----------------~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~R 77 (103)
T cd01251 14 EGFKKRWFTLDDRRLMYFKDPLDA----------------FAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPER 77 (103)
T ss_pred CCceeEEEEEeCCEEEEECCCCCc----------------CcCcEEEeeccccceeEeccCCccccccccceEEEEeCCe
Confidence 469999999997777775443221 122345555332 232211111 11 234899987644
Q ss_pred ceeeeecChhhhhhHHHHHHHHH
Q 010976 457 PVFLVADSWEALDGWLDAIRLVY 479 (496)
Q Consensus 457 ~~~~~~~~~~~~~~~~~a~~~~~ 479 (496)
..||.|+|.++++.|+.||.-|.
T Consensus 78 ty~l~a~s~~e~~~Wi~ai~~v~ 100 (103)
T cd01251 78 KFLFACETEQDRREWIAAFQNVL 100 (103)
T ss_pred EEEEECCCHHHHHHHHHHHHHHh
Confidence 44899999999999999999875
No 253
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.69 E-value=0.0027 Score=51.83 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=62.1
Q ss_pred ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC--CCCCCeeeEeecCCc
Q 010976 380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT--LPPGAGLCIETIHGP 457 (496)
Q Consensus 380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 457 (496)
....|+++||+|....|-....... . ....-.|+|.++.+|.+|.+-. ...-++|.|.|..-.
T Consensus 15 ~~K~WkrRwF~L~~~~L~y~K~~~~-------------~--~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt 79 (101)
T cd01264 15 FIKRWKTRYFTLSGAQLLFQKGKSK-------------D--DPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKT 79 (101)
T ss_pred eeecceeEEEEEeCCEEEEEeccCc-------------c--CCCCceEEcccceEEeeccccccccccCcEEEEEcCCce
Confidence 3458999999998766644221110 0 1113589999999999998743 245679999987776
Q ss_pred eeeeecChhhhhhHHHHHHHH
Q 010976 458 VFLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 458 ~~~~~~~~~~~~~~~~a~~~~ 478 (496)
.||.|+|....+.|..+|..+
T Consensus 80 ~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 80 YILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred EEEEeCCHHHHHHHHHHHHhh
Confidence 799999999999999999754
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.11 Score=48.84 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=78.3
Q ss_pred HhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-----CC
Q 010976 133 SRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CP 201 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-----~P 201 (496)
...++|++|..++.+|++-.-++ +.++-..+.+...+.. +.++..+|++|..+ .|
T Consensus 42 RnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k--------------lsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 42 RNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK--------------LSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHhCCc
Confidence 34567888888888887544333 3445566777777777 99999999999987 34
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHH
Q 010976 202 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK 281 (496)
Q Consensus 202 ~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~ 281 (496)
+.+..-...+--... .-+.++|++.|++++..++.-=+. -.-.+.+...+.+|.++.++ .+|-..
T Consensus 108 dtAAmaleKAak~le----nv~Pd~AlqlYqralavve~~dr~-~ma~el~gk~sr~lVrl~kf----------~Eaa~a 172 (308)
T KOG1585|consen 108 DTAAMALEKAAKALE----NVKPDDALQLYQRALAVVEEDDRD-QMAFELYGKCSRVLVRLEKF----------TEAATA 172 (308)
T ss_pred chHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHhccchH-HHHHHHHHHhhhHhhhhHHh----------hHHHHH
Confidence 444333333333334 678889997666666655431110 11234566777888888888 666665
Q ss_pred HHH
Q 010976 282 FRA 284 (496)
Q Consensus 282 ~~~ 284 (496)
+.+
T Consensus 173 ~lK 175 (308)
T KOG1585|consen 173 FLK 175 (308)
T ss_pred HHH
Confidence 555
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.66 E-value=0.027 Score=59.55 Aligned_cols=124 Identities=17% Similarity=0.141 Sum_probs=96.4
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----CHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNW 210 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~~~a~~~l 210 (496)
....+.|...+....+..|+..-.++..|.++...|+ +++|++.|++++..... ..-.++.+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~--------------~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El 311 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN--------------LEEAIESFERAIESQSEWKQLHHLCYFEL 311 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC--------------HHHHHHHHHHhccchhhHHhHHHHHHHHH
Confidence 4678889999999999999999999999999999999 99999999999864333 34568889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHH
Q 010976 211 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 286 (496)
Q Consensus 211 g~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al 286 (496)
|.++.. +++|++|. .+|.+.++.+ .......+..|.++..+|+. .......++|...|+++-
T Consensus 312 ~w~~~~----~~~w~~A~-------~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~---~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 312 AWCHMF----QHDWEEAA-------EYFLRLLKESKWSKAFYAYLAAACLLMLGRE---EEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHH----HchHHHHH-------HHHHHHHhccccHHHHHHHHHHHHHHhhccc---hhhhhhHHHHHHHHHHHH
Confidence 999988 99999998 7888888765 33455667788999999986 111122245555555553
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.63 E-value=0.059 Score=56.98 Aligned_cols=153 Identities=14% Similarity=0.015 Sum_probs=106.4
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD--NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
.|+-+.++..+.++.+ ..+--..+..+..+.+...- ....+ ......+.|.+.++...+..|+..-.++..|.
T Consensus 201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~----~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR 275 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGID----GEDVPLEEAEELLEEMLKRYPNSALFLFFEGR 275 (468)
T ss_pred CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCc----ccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3889999999999877 33332333333222221111 00000 02344889999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
++.. .|+.++|++.|++|+..-.. ...-..-+++.+|.++..+++| ++|..+|.+.++.+.-.
T Consensus 276 ~~~~----~g~~~~Ai~~~~~a~~~q~~---~~Ql~~l~~~El~w~~~~~~~w----------~~A~~~f~~L~~~s~WS 338 (468)
T PF10300_consen 276 LERL----KGNLEEAIESFERAIESQSE---WKQLHHLCYFELAWCHMFQHDW----------EEAAEYFLRLLKESKWS 338 (468)
T ss_pred HHHH----hcCHHHHHHHHHHhccchhh---HHhHHHHHHHHHHHHHHHHchH----------HHHHHHHHHHHhccccH
Confidence 9999 99999999655554421111 1112456789999999999999 99999999999876543
Q ss_pred -HHHHHHHHHHHHHcchh
Q 010976 293 -HRAIYNLGTVLYGLAED 309 (496)
Q Consensus 293 -~~a~~~lg~~~~~~g~~ 309 (496)
....|..|.++..+++.
T Consensus 339 ka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 34456678888888874
No 257
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.2 Score=46.87 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=65.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC-----CC-CHHHHHH
Q 010976 136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-----PT-LHDAFYN 209 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-----P~-~~~a~~~ 209 (496)
+.+++|.++|.++ |+.|....+ +..|=..|-++-.+. .+ -+..|..
T Consensus 28 ~k~eeAadl~~~A--------------an~yklaK~--------------w~~AG~aflkaA~~h~k~~skhDaat~Yve 79 (288)
T KOG1586|consen 28 NKYEEAAELYERA--------------ANMYKLAKN--------------WSAAGDAFLKAADLHLKAGSKHDAATTYVE 79 (288)
T ss_pred cchHHHHHHHHHH--------------HHHHHHHHh--------------HHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 5788888888887 444555555 666666666655441 11 2344555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976 210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 289 (496)
Q Consensus 210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~ 289 (496)
.+.+|. .++..+|+.++++|++.|...-+.. .-+.-+..+|.+|..- +.++++||.+|++|-+.-
T Consensus 80 A~~cyk-----k~~~~eAv~cL~~aieIyt~~Grf~-~aAk~~~~iaEiyEsd---------l~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 80 AANCYK-----KVDPEEAVNCLEKAIEIYTDMGRFT-MAAKHHIEIAEIYESD---------LQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred HHHHhh-----ccChHHHHHHHHHHHHHHHhhhHHH-HHHhhhhhHHHHHhhh---------HHHHHHHHHHHHHHHHHH
Confidence 566664 4588888866666666665432211 0122234455555432 345599999999998764
Q ss_pred C
Q 010976 290 F 290 (496)
Q Consensus 290 P 290 (496)
.
T Consensus 145 k 145 (288)
T KOG1586|consen 145 K 145 (288)
T ss_pred c
Confidence 3
No 258
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.52 E-value=0.0072 Score=62.89 Aligned_cols=98 Identities=22% Similarity=0.202 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976 186 LEEACKKYDEATRLCPTLH-DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~-~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 264 (496)
...|++++.+|+.+.|... ....+|+.++.. .|-.-+|- ..+.++|.++...+-.++.+|.++..+.+
T Consensus 623 ~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----~~~~~da~-------~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 623 STFAIACLQRALNLAPLQQDVPLVNLANLLIH----YGLHLDAT-------KLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cHHHHHHHHHHhccChhhhcccHHHHHHHHHH----hhhhccHH-------HHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 9999999999999999754 457899999988 78777887 78888999998889999999999999999
Q ss_pred cchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010976 265 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 304 (496)
Q Consensus 265 ~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~ 304 (496)
. +.|+++|++|+.++|+++.+...|-.+-.
T Consensus 692 i----------~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 I----------SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred h----------HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9 99999999999999999999888776655
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.48 E-value=0.07 Score=53.83 Aligned_cols=143 Identities=18% Similarity=0.171 Sum_probs=108.9
Q ss_pred hHhhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-----
Q 010976 132 RSRQRILTFAAKRYANAIERNP----EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----- 202 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P----~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----- 202 (496)
..+.|.++.|...+.++...++ ..+.+.+..+.+++..|+ -.+|+..++..+.....
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~--------------~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE--------------QEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhcccc
Confidence 4457999999999999988662 257788889999999999 99999999998882111
Q ss_pred ----------------------CHHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976 203 ----------------------LHDAFYNWAIAISDRAKMRGRTKEAE------ELWKQATKNYEKAVQLNWNSPQALNN 254 (496)
Q Consensus 203 ----------------------~~~a~~~lg~~~~~~~~~~g~~~eA~------~~~~~A~~~~~~Al~l~P~~~~a~~~ 254 (496)
...-.-..+.++.. .|++.... ..++.++..|.++++++|+...+|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~----~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLL----LAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHH----HHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 11222344556665 77777666 66777889999999999999999999
Q ss_pred HHHHHHHccCcchH-------HHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 255 WGLALQELSAIVPA-------REKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 255 lg~~l~~~g~~~~A-------~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
+|..+...-..... .........|+..|-+++.+.+++
T Consensus 298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 99998877554321 123455678999999999999883
No 260
>PRK10941 hypothetical protein; Provisional
Probab=96.47 E-value=0.026 Score=54.89 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=68.6
Q ss_pred HHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 010976 119 ELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 198 (496)
Q Consensus 119 ~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 198 (496)
..+.+.+......+.+.++++.|+.+.+..+.++|+++.-+..+|.+|.++|. +..|...++..++
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c--------------~~~A~~DL~~fl~ 243 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC--------------EHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHH
Confidence 34555555555667788999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCHHHHHHHH
Q 010976 199 LCPTLHDAFYNWA 211 (496)
Q Consensus 199 l~P~~~~a~~~lg 211 (496)
.+|+++.+-.-.-
T Consensus 244 ~~P~dp~a~~ik~ 256 (269)
T PRK10941 244 QCPEDPISEMIRA 256 (269)
T ss_pred hCCCchhHHHHHH
Confidence 9999988765433
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.14 Score=48.20 Aligned_cols=174 Identities=14% Similarity=0.042 Sum_probs=104.5
Q ss_pred CCCChhhhhhcHHHHHHHHHHhhccch----------------hhhHhhccHHHHHHHHHHHHHhC-----CCCHHHHHH
Q 010976 103 QGNTPHQLAEQNNAAMELINSVTGVDE----------------EGRSRQRILTFAAKRYANAIERN-----PEDYDALYN 161 (496)
Q Consensus 103 ~~~~~~~~~~~~~~A~~~~~~~l~~~~----------------~~~~~~g~~~~Ai~~~~~al~~~-----P~~~~a~~~ 161 (496)
.+...++.+.++++|-..+.++..... .-......+.++..+|++|..+. |+.+..-..
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmale 115 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALE 115 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHH
Confidence 345566777788888777776663221 00112356777777777777653 443333333
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976 162 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 235 (496)
Q Consensus 162 lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~ 235 (496)
.+.-..+..+ +++|+.+|++++.+--.. .+.+-..+++|.. ..+|.+|-..+.+-.
T Consensus 116 KAak~lenv~--------------Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 116 KAAKALENVK--------------PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAATAFLKEG 177 (308)
T ss_pred HHHHHhhcCC--------------HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHHHHHHhh
Confidence 3333344444 999999999999873332 2345566677877 888888875554433
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH
Q 010976 236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL----QFDFHRAIYNLGTVLYG 305 (496)
Q Consensus 236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l----~P~~~~a~~~lg~~~~~ 305 (496)
..+.+.-. -++...++...-.+|....+| ..|..+|+..-++ .+++..++-||-..|-.
T Consensus 178 ~~~~~~~~-y~~~~k~~va~ilv~L~~~Dy----------v~aekc~r~~~qip~f~~sed~r~lenLL~ayd~ 240 (308)
T KOG1585|consen 178 VAADKCDA-YNSQCKAYVAAILVYLYAHDY----------VQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE 240 (308)
T ss_pred hHHHHHhh-cccHHHHHHHHHHHHhhHHHH----------HHHHHHhcchhcCccccChHHHHHHHHHHHHhcc
Confidence 33332211 122333444444555555577 9999999998776 45667777777666543
No 262
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.44 Score=48.21 Aligned_cols=185 Identities=17% Similarity=0.169 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010976 138 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 217 (496)
Q Consensus 138 ~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~ 217 (496)
-.++++.=.+.+..+|+...+|+..-.++...-.. .+.....+...+++-+.+...+++.+|+...+|+.+..++..
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~--~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~- 121 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR--AQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK- 121 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh--hcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-
Confidence 35688888889999999999998776666543320 022223445568888999999999999999999999999987
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976 218 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 297 (496)
Q Consensus 218 ~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 297 (496)
.+.. .|.+-+..+.++++.||.|..+|...-.+....... .....+=+++..++|.-++.|..+|.
T Consensus 122 ---~p~~-----~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~------~~~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 122 ---NPHS-----DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS------RNLEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred ---CCCc-----hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc------cccchhHHHHHHHHHhccchhhhHHH
Confidence 6544 566666999999999999999988776666554332 01125667889999999999999999
Q ss_pred HHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 298 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 298 ~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
+...++..+-.... .+. .-+.+....-.++...|.--+|++.
T Consensus 188 yRs~lL~~l~~~~~------~g~-~~~~~~l~sEle~v~saiFTdp~Dq 229 (421)
T KOG0529|consen 188 YRSLLLSTLHPKEA------DGN-FMPKELLQSELEMVHSAIFTDPEDQ 229 (421)
T ss_pred HHHHHHHHhccccc------cCc-cCCHHHHHHHHHHHHHHHhcCcccc
Confidence 99998875543110 000 1235566777778888888899888
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.051 Score=53.28 Aligned_cols=119 Identities=18% Similarity=-0.010 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976 159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 238 (496)
Q Consensus 159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~ 238 (496)
...-+.+++..|+ +-+|....++.|+-.|.+.-++..--.+++. .|+...-. ..+
T Consensus 106 ~h~~aai~~~~g~--------------~h~a~~~wdklL~d~PtDlla~kfsh~a~fy----~G~~~~~k-------~ai 160 (491)
T KOG2610|consen 106 RHAKAAILWGRGK--------------HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY----NGNQIGKK-------NAI 160 (491)
T ss_pred hhhhHHHhhcccc--------------ccHHHHHHHHHHHhCchhhhhhhhhhhHHHh----ccchhhhh-------hHH
Confidence 3344566777788 9999999999999999998888877778877 89888888 788
Q ss_pred HHHHhc-CCCC---HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHh
Q 010976 239 EKAVQL-NWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 312 (496)
Q Consensus 239 ~~Al~l-~P~~---~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a 312 (496)
++.+-. |++- ...+..++..+.+.|-| ++|.+.-++++++++.+.-+...++.++...|+....
T Consensus 161 ~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y----------~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg 228 (491)
T KOG2610|consen 161 EKIIPKWNADLPCYSYVHGMYAFGLEECGIY----------DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEG 228 (491)
T ss_pred HHhccccCCCCcHHHHHHHHHHhhHHHhccc----------hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhH
Confidence 888755 6654 66677788899999999 9999999999999999999999999999988875443
No 264
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.39 E-value=0.053 Score=50.95 Aligned_cols=103 Identities=18% Similarity=0.111 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC------CHHH
Q 010976 185 LLEEACKKYDEATRL----CPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN------SPQA 251 (496)
Q Consensus 185 ~~~~A~~~~~~Al~l----~P~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~------~~~a 251 (496)
.+++|++.|.-|+-. ... -+..+..++.+|.. +|+.+.....+++|+..|.++++.... ....
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~----~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD----LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 388888888887754 212 25667888888888 999999999999999999999976632 3578
Q ss_pred HHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 010976 252 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-RAIYNLGT 301 (496)
Q Consensus 252 ~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~-~a~~~lg~ 301 (496)
++.+|.+..++|++ ++|+.+|.+++...-... ..+.+++.
T Consensus 168 ~YLigeL~rrlg~~----------~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 168 LYLIGELNRRLGNY----------DEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHhCCH----------HHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 88999999999999 999999999998643332 34444444
No 265
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.39 E-value=0.15 Score=55.26 Aligned_cols=164 Identities=21% Similarity=0.127 Sum_probs=117.1
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH-----hCCCCHHHHHHHH
Q 010976 137 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-----LCPTLHDAFYNWA 211 (496)
Q Consensus 137 ~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-----l~P~~~~a~~~lg 211 (496)
+...|...|+.+... .+..+.+.+|.+|..-+. ....+++.|+.+|+.+.. ..-.++.+.+.+|
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~---------g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg 295 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTY---------GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLG 295 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccc---------cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHH
Confidence 467899999998776 478899999999987633 334459999999999977 1112666899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
.+|.. ..-...- ++.+|+.+|.++-.+ .++.+.+++|.++.... +..++..|..+|..|.. -.
T Consensus 296 ~~Y~~----g~~~~~~--d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~-------~~~d~~~A~~yy~~Aa~--~G 358 (552)
T KOG1550|consen 296 RLYLQ----GLGVEKI--DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGT-------KERDYRRAFEYYSLAAK--AG 358 (552)
T ss_pred HHHhc----CCCCccc--cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCC-------ccccHHHHHHHHHHHHH--cC
Confidence 99986 4311110 445555899888777 47889999999998766 11334899999999865 46
Q ss_pred CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 010976 292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 343 (496)
Q Consensus 292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 343 (496)
+..+.++++.+|..-.- . ..+ ...|..+|.++-+...
T Consensus 359 ~~~A~~~la~~y~~G~g------v-----~r~----~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 359 HILAIYRLALCYELGLG------V-----ERN----LELAFAYYKKAAEKGN 395 (552)
T ss_pred ChHHHHHHHHHHHhCCC------c-----CCC----HHHHHHHHHHHHHccC
Confidence 78999999998864311 0 011 4567777777777663
No 266
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.36 E-value=0.0086 Score=48.70 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=41.1
Q ss_pred eeeecCceeecccccCCCCCCCCeeeEeecCC-ceeeeecChhhhhhHHHHHH
Q 010976 425 IRIEVPDIVSVSACADLTLPPGAGLCIETIHG-PVFLVADSWEALDGWLDAIR 476 (496)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~ 476 (496)
-.|+++.+ +|.++.|..+-.-+.|.+-+..+ -+|+.+++.++.+.|..+|+
T Consensus 45 gli~l~~~-~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~~er~~Wi~~l~ 96 (98)
T cd01245 45 GLIDLSDA-YLYPVHDSLFGRPNCFQIVERALPTVYYSCRSSEERDKWIESLQ 96 (98)
T ss_pred ceeecccc-EEEEccccccCCCeEEEEecCCCCeEEEEeCCHHHHHHHHHHHh
Confidence 36788888 99999997666568888876655 46777777799999999986
No 267
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.30 E-value=0.81 Score=45.91 Aligned_cols=126 Identities=14% Similarity=0.140 Sum_probs=89.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc
Q 010976 142 AKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR 221 (496)
Q Consensus 142 i~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~ 221 (496)
...|++.++.+|.|.++|..+....-..-...... ........+.-+..|++||+.+|++...+..+-.+... .
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~----~ 78 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK----V 78 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----h
Confidence 35678899999999999999987766554311100 22344557788899999999999999988887777766 7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976 222 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 222 g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~~A~~~~~~~~~Ai~~~~~Al~l 288 (496)
...++.. +.+++++..+|++...|..+-...+. .+.+ .+......|.++|+.
T Consensus 79 ~~~~~l~-------~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f--------~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 79 WDSEKLA-------KKWEELLFKNPGSPELWREYLDFRQSNFASF--------TVSDVRDVYEKCLRA 131 (321)
T ss_pred CCHHHHH-------HHHHHHHHHCCCChHHHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHH
Confidence 7777766 78888999999999888655433332 3332 226666777776654
No 268
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.27 E-value=0.52 Score=50.23 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=107.6
Q ss_pred hhccHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----C
Q 010976 134 RQRILTFAAKRYANAIE-RNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----L 203 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~-~~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~ 203 (496)
..|+..+-+..|.+|++ .+|.- ...|..+|..|...|+ ++.|...|++|++.+=. .
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~--------------l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD--------------LDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc--------------HHHHHHHHHHhhcCCccchHHH
Confidence 35788889999999875 46643 4789999999999999 99999999999987432 3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC------------------CCHHHHHHHHHHHHHccCc
Q 010976 204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW------------------NSPQALNNWGLALQELSAI 265 (496)
Q Consensus 204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P------------------~~~~a~~~lg~~l~~~g~~ 265 (496)
+.+|.++|..-.. ..+++.|+ .+.++|...-- ++...|..++......|-+
T Consensus 425 a~vw~~waemElr----h~~~~~Al-------~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 425 AEVWCAWAEMELR----HENFEAAL-------KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred HHHHHHHHHHHHh----hhhHHHHH-------HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 6789999988888 88888888 45555543311 1233455555555555655
Q ss_pred chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
+.-...|.+.+.+.--.|.+..|.|..+....-
T Consensus 494 ----------estk~vYdriidLriaTPqii~NyAmfLEeh~y 526 (835)
T KOG2047|consen 494 ----------ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKY 526 (835)
T ss_pred ----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHH
Confidence 899999999999999999999999998877765
No 269
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.25 E-value=0.015 Score=56.25 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 259 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 259 (496)
.++|...|+.|++++|++++++..+|..... ..+.-+|- .+|-+|+.++|.+.+++.|.....
T Consensus 132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~----~~~iv~AD-------q~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 132 LEKAMTLFEHALALAPTNPQILIEMGQFREM----HNEIVEAD-------QCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh----hhhhHhhh-------hhhheeeeeCCCchHHHhhhhccc
Confidence 9999999999999999999999998888877 67777777 899999999999999999987653
No 270
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=96.24 E-value=0.0066 Score=49.25 Aligned_cols=79 Identities=13% Similarity=0.271 Sum_probs=53.2
Q ss_pred ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecC-Cce
Q 010976 380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIH-GPV 458 (496)
Q Consensus 380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 458 (496)
....|.++||+|....|..+..... ......|+|... .|..+.+.. ..+.|.|.+.. .+.
T Consensus 16 ~~k~WkkrwfvL~~~~L~yyk~~~~----------------~~~~~~I~L~~~-~v~~~~~~~--k~~~F~I~~~~~~~~ 76 (96)
T cd01260 16 MGQKWARRWFVLKGTTLYWYRSKQD----------------EKAEGLIFLSGF-TIESAKEVK--KKYAFKVCHPVYKSF 76 (96)
T ss_pred cccCceeEEEEEECCEEEEECCCCC----------------CccceEEEccCC-EEEEchhcC--CceEEEECCCCCcEE
Confidence 3458999999998766665433221 112456777754 344443333 45677777666 556
Q ss_pred eeeecChhhhhhHHHHHHH
Q 010976 459 FLVADSWEALDGWLDAIRL 477 (496)
Q Consensus 459 ~~~~~~~~~~~~~~~a~~~ 477 (496)
||.|+|.+++..|++||+.
T Consensus 77 ~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 77 YFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred EEEeCCHHHHHHHHHHHHh
Confidence 9999999999999999974
No 271
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.23 E-value=0.023 Score=58.12 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--------CHHHHHHHHH
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--------SPQALNNWGL 257 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--------~~~a~~~lg~ 257 (496)
+.-+..-...++.+..+.+.+.+..+..++. .|++.+|.+.+ ...-+...|. .-..|+|+|.
T Consensus 222 Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~----~gn~~kA~KlL------~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 222 LKLAKREVKHVMNIAQDSSMALLLKSQLEYA----HGNHPKAMKLL------LVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH----hcchHHHHHHH------HhcccccccCccccchhhhheeecCcce
Confidence 6666667777777777888888888888888 99999998422 2223333343 2345799999
Q ss_pred HHHHccCcchHHHhhhhHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcch
Q 010976 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQL------------------QFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l------------------~P~~~~a~~~lg~~~~~~g~ 308 (496)
+++++|.| .-++.+|.+||+- .-...++.||.|..|...|+
T Consensus 292 Ih~~~~~y----------~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr 350 (696)
T KOG2471|consen 292 IHYQLGCY----------QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR 350 (696)
T ss_pred EeeehhhH----------HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC
Confidence 99999999 9999999999961 12457899999999999998
No 272
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.20 E-value=0.027 Score=58.86 Aligned_cols=103 Identities=20% Similarity=0.117 Sum_probs=89.8
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYD-ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 211 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~-a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 211 (496)
..+|+...|+.++..|+...|.... ...+|++++...+- .-.|-.++.+++.++-..+-.++.+|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~--------------~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL--------------HLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh--------------hccHHHHHHHHHhhcccCchHHHhcc
Confidence 3469999999999999999987543 57899999999998 88999999999999988888889989
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010976 212 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 260 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 260 (496)
.++.. +.+.+.|+ +.|+.|+.++|+++.+.+.|-.+-+
T Consensus 684 ~~~l~----l~~i~~a~-------~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 684 NAYLA----LKNISGAL-------EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHH----HhhhHHHH-------HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888 77777777 8999999999999999887766555
No 273
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.083 Score=55.47 Aligned_cols=137 Identities=20% Similarity=0.036 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010976 140 FAAKRYANAIERNPEDYDALYN--WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 217 (496)
Q Consensus 140 ~Ai~~~~~al~~~P~~~~a~~~--lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~ 217 (496)
-++..+...+.++|.++..+.. +...+...++ ...++-....++..+|++..++.+||.++..
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~- 113 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLAD--------------STLAFLAKRIPLSVNPENCPAVQNLAAALEL- 113 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhcccccc--------------chhHHHHHhhhHhcCcccchHHHHHHHHHHH-
Confidence 3677777777788888877443 4677777777 8889999999999999999999999999988
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976 218 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 297 (496)
Q Consensus 218 ~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 297 (496)
.|....++. ...+.+....|++.+....+-.+|. ++++ ...+++..++.....+++.+.|.++.+..
T Consensus 114 ---~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 114 ---DGLQFLALA------DISEIAEWLSPDNAEFLGHLIRFYQ-LGRY---LKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred ---hhhHHHHHH------HHHHHHHhcCcchHHHHhhHHHHHH-HHHH---HHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 777766663 4555588889999998888855555 5555 34444448899999999999999977766
Q ss_pred HHHHHHH
Q 010976 298 NLGTVLY 304 (496)
Q Consensus 298 ~lg~~~~ 304 (496)
.+.....
T Consensus 181 ~~~~~r~ 187 (620)
T COG3914 181 ALMTARQ 187 (620)
T ss_pred HHHHHHH
Confidence 6666633
No 274
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.16 E-value=0.011 Score=37.20 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 203 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~ 203 (496)
++++.+|.++..+|+ +++|++.|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~--------------~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGD--------------YDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCH--------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHCcCC
Confidence 578999999999999 999999999999999974
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.13 E-value=0.011 Score=38.55 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh
Q 010976 158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 199 (496)
Q Consensus 158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 199 (496)
+|.+||.+|..+|+ |++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~--------------~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGD--------------YEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT---------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--------------HHHHHHHHHHHHHh
Confidence 57899999999999 99999999997765
No 276
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.27 Score=44.85 Aligned_cols=117 Identities=13% Similarity=0.017 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Q 010976 140 FAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIA 213 (496)
Q Consensus 140 ~Ai~~~~~al~~~P~~~---~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~ 213 (496)
+.+...++.+.-++... -+-..++..+...++ +++|+..++.++..-.+ ..-+-.+|+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~--------------~d~A~aqL~~~l~~t~De~lk~l~~lRLArv 135 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANN--------------LDKAEAQLKQALAQTKDENLKALAALRLARV 135 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 34444444444554443 234466788888898 99999999999865333 23456788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
... +|++++|+ ..+..... +. .+..--..|.++...|+- ++|+..|.+|++.+++.
T Consensus 136 q~q----~~k~D~AL-------~~L~t~~~--~~w~~~~~elrGDill~kg~k----------~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 136 QLQ----QKKADAAL-------KTLDTIKE--ESWAAIVAELRGDILLAKGDK----------QEARAAYEKALESDASP 192 (207)
T ss_pred HHH----hhhHHHHH-------HHHhcccc--ccHHHHHHHHhhhHHHHcCch----------HHHHHHHHHHHHccCCh
Confidence 999 99999999 44443211 11 122345679999999999 99999999999997554
Q ss_pred H
Q 010976 293 H 293 (496)
Q Consensus 293 ~ 293 (496)
+
T Consensus 193 ~ 193 (207)
T COG2976 193 A 193 (207)
T ss_pred H
Confidence 3
No 277
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.08 E-value=1.8 Score=43.69 Aligned_cols=212 Identities=18% Similarity=0.062 Sum_probs=121.4
Q ss_pred hhhcHHHHHHHHHHhhccch------hhh----HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------
Q 010976 110 LAEQNNAAMELINSVTGVDE------EGR----SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN------- 172 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~~------~~~----~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~------- 172 (496)
..|+++.|..-|+.+++.-. .|+ .++|+.+.|+.+-+.+-...|.-+.++...-......|+.
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 45777777777776665441 122 2357888888888888888887777666555555555551
Q ss_pred --------CCCCCCC------------cchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976 173 --------VSLDSTS------------PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 232 (496)
Q Consensus 173 --------~~~~~~~------------~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 232 (496)
+.++... ..-..+...|...-.+++++.|+...+-..-+.+|+. .|+..++-
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~---- 283 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGS---- 283 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhh----
Confidence 0000000 0112235566666777777788877777777788888 88888887
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHcchh
Q 010976 233 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA---IQLQFDFHRAIYNLGTVLYGLAED 309 (496)
Q Consensus 233 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A---l~l~P~~~~a~~~lg~~~~~~g~~ 309 (496)
..++.+-+.+|+ +. ++.+|....-- +.++.-++++ .++.|+|.+.....+..-+.-|+.
T Consensus 284 ---~ilE~aWK~ePH-P~----ia~lY~~ar~g----------dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 284 ---KILETAWKAEPH-PD----IALLYVRARSG----------DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred ---hHHHHHHhcCCC-hH----HHHHHHHhcCC----------CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 677777777764 22 23334333333 3344444443 345788888888888777777765
Q ss_pred HHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHH
Q 010976 310 TLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 347 (496)
Q Consensus 310 ~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 347 (496)
..+....-......|.+.+......++.+-.-|.....
T Consensus 346 ~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 346 SAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred HHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHH
Confidence 43332221122344444343444444555444444443
No 278
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.07 E-value=0.084 Score=42.31 Aligned_cols=66 Identities=20% Similarity=0.071 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCc
Q 010976 189 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--PQALNNWGLALQELSAI 265 (496)
Q Consensus 189 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~g~~ 265 (496)
.+..+++.++.+|++..+.+.++..+.. .|++++|+ +.+-..++.++++ ..+...+-.++..+|.-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~----~g~~e~Al-------~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA----AGDYEEAL-------DQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4678899999999999999999999999 99999999 8888999888765 66666666677777775
No 279
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=96.04 E-value=0.012 Score=47.27 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=47.8
Q ss_pred ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-
Q 010976 380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV- 458 (496)
Q Consensus 380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 458 (496)
....|+++||+|....|..+-...... ....-.|+|....-+.... ....|.|.+..+.+
T Consensus 11 ~~k~Wk~RwFvL~~g~L~Yyk~~~~~~--------------~~~~G~I~L~~~~i~~~~~-----~~~~F~i~~~~~r~~ 71 (91)
T cd01247 11 YINGWQDRYFVLKEGNLSYYKSEAEKS--------------HGCRGSIFLKKAIIAAHEF-----DENRFDISVNENVVW 71 (91)
T ss_pred ccCCCceEEEEEECCEEEEEecCccCc--------------CCCcEEEECcccEEEcCCC-----CCCEEEEEeCCCeEE
Confidence 345899999999755555433211100 0123456666432222111 13466676555456
Q ss_pred eeeecChhhhhhHHHHHHH
Q 010976 459 FLVADSWEALDGWLDAIRL 477 (496)
Q Consensus 459 ~~~~~~~~~~~~~~~a~~~ 477 (496)
||.|+|.++.+.|++||..
T Consensus 72 ~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 72 YLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999963
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.01 E-value=0.012 Score=38.22 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976 251 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 289 (496)
Q Consensus 251 a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~ 289 (496)
+|.+||.+|..+|++ ++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~----------~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDY----------EKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-H----------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHHHHhc
Confidence 588999999999999 99999999976553
No 281
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.91 E-value=0.027 Score=58.21 Aligned_cols=89 Identities=24% Similarity=0.124 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
...|+..|.++++..|.....+.+++.++..++.. |+.-.|+ ..+..|+++||....+|+.|+.++.+++++
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-~d~~~Al-------rDch~Alrln~s~~kah~~la~aL~el~r~ 461 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-GDSYLAL-------RDCHVALRLNPSIQKAHFRLARALNELTRY 461 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-ccHHHHH-------HhHHhhccCChHHHHHHHHHHHHHHHHhhH
Confidence 88899999999999999999999999999874332 3555555 899999999999999999999999999999
Q ss_pred chHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 266 VPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
.+|+.+...+....|.+
T Consensus 462 ----------~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 462 ----------LEALSCHWALQMSFPTD 478 (758)
T ss_pred ----------HHhhhhHHHHhhcCchh
Confidence 99998877766666743
No 282
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.88 E-value=1.5 Score=43.08 Aligned_cols=178 Identities=21% Similarity=0.118 Sum_probs=120.6
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
...+++..|+..|..+-.. .++.+...++.+|..-.- ...+..+|+..|+.+ .+..++.+.++||.
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~g----------v~~~~~~A~~~~~~~--a~~g~~~a~~~lg~ 117 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKG----------VSRDKTKAADWYRCA--AADGLAEALFNLGL 117 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccC----------ccccHHHHHHHHHHH--hhcccHHHHHhHHH
Confidence 3467888899999888763 344788888888876442 223388999999944 56678899999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
+|.. |+- ...++.+|...|++|.+..-.. ..+.+++|.+|..-. .. ..-..+...|+..|+++-...
T Consensus 118 ~~~~-----G~g--v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~--~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 118 MYAN-----GRG--VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA--LAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred HHhc-----CCC--cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh--hcccHHHHhHHHHHHHHHHhc--
Confidence 9975 321 1224455558999998875332 344899999888753 10 111122358999999998876
Q ss_pred CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 010976 292 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA 351 (496)
Q Consensus 292 ~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~a 351 (496)
++.+.+++|.+|..- . +... .+..|..+|.++-+.......|...
T Consensus 186 ~~~a~~~lg~~y~~G-~-----Gv~~---------d~~~A~~wy~~Aa~~g~~~a~~~~~ 230 (292)
T COG0790 186 NPDAQLLLGRMYEKG-L-----GVPR---------DLKKAFRWYKKAAEQGDGAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHcC-C-----CCCc---------CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 889999999776543 1 1111 1688999999998887733344433
No 283
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.88 E-value=0.015 Score=47.14 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=49.8
Q ss_pred hhhhhhhccccchh--hhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce
Q 010976 381 HSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV 458 (496)
Q Consensus 381 ~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (496)
...|+++||+|+.. -|..+..... ..+.-.|+|..+..+....+ ....|.|-|..--.
T Consensus 14 ~K~WkkRWFvL~~~~~~L~Yyk~~~d----------------~~p~G~I~L~~~~~~~~~~~----~~~~F~i~t~~r~y 73 (95)
T cd01265 14 LRGRRSRWFALDDRTCYLYYYKDSQD----------------AKPLGRVDLSGAAFTYDPRE----EKGRFEIHSNNEVI 73 (95)
T ss_pred CcCceeEEEEEcCCCcEEEEECCCCc----------------ccccceEECCccEEEcCCCC----CCCEEEEEcCCcEE
Confidence 45899999999743 2444332211 12344666666443322222 23578888654445
Q ss_pred eeeecChhhhhhHHHHHHHH
Q 010976 459 FLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 459 ~~~~~~~~~~~~~~~a~~~~ 478 (496)
+|.|+|.++++.|+.||...
T Consensus 74 ~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 74 ALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred EEECCCHHHHHHHHHHHHhh
Confidence 99999999999999999754
No 284
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.81 E-value=0.097 Score=41.94 Aligned_cols=70 Identities=24% Similarity=0.165 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHH
Q 010976 141 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYNWAIAISDRA 218 (496)
Q Consensus 141 Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~~~~~~ 218 (496)
.+..+++.++.+|++.++.+.+|..+...|+ +++|++.+-.+++.++++ -.+...+-.++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~--------------~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-- 70 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGD--------------YEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-- 70 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCccccccHHHHHHHHHHHH--
Confidence 5678899999999999999999999999999 999999999999998875 4455554445544
Q ss_pred HHcCCHHHHH
Q 010976 219 KMRGRTKEAE 228 (496)
Q Consensus 219 ~~~g~~~eA~ 228 (496)
+|.-+.-.
T Consensus 71 --lg~~~plv 78 (90)
T PF14561_consen 71 --LGPGDPLV 78 (90)
T ss_dssp --H-TT-HHH
T ss_pred --cCCCChHH
Confidence 66654444
No 285
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.77 E-value=0.29 Score=49.16 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=98.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976 136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 215 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~ 215 (496)
...+.-+..|++||+.+|++...+..+-.+..+..+ -++..+.+++++..+|++...|..+-....
T Consensus 45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~--------------~~~l~~~we~~l~~~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 45 ALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD--------------SEKLAKKWEELLFKNPGSPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 445678899999999999999999988888888888 889999999999999999988876543332
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhcC----C-------CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHH
Q 010976 216 DRAKMRGRTKEAEELWKQATKNYEKAVQLN----W-------NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 284 (496)
Q Consensus 216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~----P-------~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~ 284 (496)
.. ...-.+......|.+++..+.....-. + .......++...+.+.|.. +.|+..++.
T Consensus 111 ~~-~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~----------E~Ava~~Qa 179 (321)
T PF08424_consen 111 SN-FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT----------ERAVALWQA 179 (321)
T ss_pred HH-hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch----------HHHHHHHHH
Confidence 10 012357788888888877777665442 1 1234456666777777777 999999999
Q ss_pred HHHhcCC
Q 010976 285 AIQLQFD 291 (496)
Q Consensus 285 Al~l~P~ 291 (496)
.++++-.
T Consensus 180 ~lE~n~~ 186 (321)
T PF08424_consen 180 LLEFNFF 186 (321)
T ss_pred HHHHHcC
Confidence 9998643
No 286
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.75 E-value=0.017 Score=36.28 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 250 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
++++++|.++..+|++ ++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~----------~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDY----------DEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCcCC
Confidence 4789999999999999 99999999999999974
No 287
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.68 E-value=0.016 Score=35.18 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 250 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
.+++++|.++..+|++ ++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~----------~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDY----------DEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhH----------HHHHHHHHHHHccCCCC
Confidence 5788999999999999 99999999999998863
No 288
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.60 E-value=0.021 Score=34.55 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 203 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~ 203 (496)
.+++.+|.++..+++ +++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~--------------~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGD--------------YDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhh--------------HHHHHHHHHHHHccCCCC
Confidence 568899999999999 999999999999998863
No 289
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.63 Score=45.24 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 236 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~ 236 (496)
+.-+.-+.-....++ +.+|...|..++...|++.++...++.+|.. .|+.+.|. .
T Consensus 135 e~~~~~~~~~~~~e~--------------~~~a~~~~~~al~~~~~~~~~~~~la~~~l~----~g~~e~A~-------~ 189 (304)
T COG3118 135 EEALAEAKELIEAED--------------FGEAAPLLKQALQAAPENSEAKLLLAECLLA----AGDVEAAQ-------A 189 (304)
T ss_pred HHHHHHhhhhhhccc--------------hhhHHHHHHHHHHhCcccchHHHHHHHHHHH----cCChHHHH-------H
Confidence 344455666677788 9999999999999999999999999999999 99999888 3
Q ss_pred HHHHHHhcCCCCHHH--HHH---HHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010976 237 NYEKAVQLNWNSPQA--LNN---WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 310 (496)
Q Consensus 237 ~~~~Al~l~P~~~~a--~~~---lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 310 (496)
.+. ..|.+... +.. .-..+.+.... . =+..+++.+..+|++..+.+.++..+...|+..
T Consensus 190 iL~----~lP~~~~~~~~~~l~a~i~ll~qaa~~----------~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e 253 (304)
T COG3118 190 ILA----ALPLQAQDKAAHGLQAQIELLEQAAAT----------P-EIQDLQRRLAADPDDVEAALALADQLHLVGRNE 253 (304)
T ss_pred HHH----hCcccchhhHHHHHHHHHHHHHHHhcC----------C-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 333 22332211 111 11233333332 2 234577788889999999999999999999843
No 290
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.55 E-value=0.016 Score=49.12 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=55.9
Q ss_pred hccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeeccc--ccCCCC
Q 010976 366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSA--CADLTL 443 (496)
Q Consensus 366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 443 (496)
+|+|+.-.. ......|+|+||+|...-+.....++... ...+...|+|........ +-.-.-
T Consensus 4 ~GfL~~~q~---~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-------------~~~Plg~I~L~~c~~~~v~~~~r~~c 67 (122)
T cd01263 4 HGFLTMFED---TSGFGAWHRRWCALEGGEIKYWKYPDDEK-------------RKGPTGLIDLSTCTSSEGASAVRDIC 67 (122)
T ss_pred ceeEEEEec---cCCCCCceEEEEEEeCCEEEEEcCCCccc-------------cCCceEEEEhhhCcccccccCChhhc
Confidence 567765221 13456899999999855555544433311 012345666665433222 222234
Q ss_pred CCCCeeeEeecCCc--------------------eeeeecChhhhhhHHHHHH
Q 010976 444 PPGAGLCIETIHGP--------------------VFLVADSWEALDGWLDAIR 476 (496)
Q Consensus 444 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~a~~ 476 (496)
|+..+|.+++..-. +||-||+.++++.|+.||.
T Consensus 68 ~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain 120 (122)
T cd01263 68 ARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLN 120 (122)
T ss_pred CCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHh
Confidence 55666666543211 5888999999999999985
No 291
>PRK10941 hypothetical protein; Provisional
Probab=95.52 E-value=0.15 Score=49.55 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976 206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 285 (496)
Q Consensus 206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A 285 (496)
...|+-.+|.. .++++.|+ .+.+..+.++|+++.-+..+|.+|.++|.+ ..|+..++.-
T Consensus 183 ml~nLK~~~~~----~~~~~~AL-------~~~e~ll~l~P~dp~e~RDRGll~~qL~c~----------~~A~~DL~~f 241 (269)
T PRK10941 183 LLDTLKAALME----EKQMELAL-------RASEALLQFDPEDPYEIRDRGLIYAQLDCE----------HVALSDLSYF 241 (269)
T ss_pred HHHHHHHHHHH----cCcHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHHH
Confidence 35566667777 88888888 899999999999999999999999999999 9999999999
Q ss_pred HHhcCCCHHHHHHHHH
Q 010976 286 IQLQFDFHRAIYNLGT 301 (496)
Q Consensus 286 l~l~P~~~~a~~~lg~ 301 (496)
++..|+++.+-.-.-.
T Consensus 242 l~~~P~dp~a~~ik~q 257 (269)
T PRK10941 242 VEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHhCCCchhHHHHHHH
Confidence 9999999876554433
No 292
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.48 E-value=0.027 Score=45.11 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=51.4
Q ss_pred hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCceee
Q 010976 381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFL 460 (496)
Q Consensus 381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (496)
...|.++||+|....|.......... ......|++... ++..+.+.. -..+.|.|.|...+.+|
T Consensus 13 ~~~W~kr~~~L~~~~l~~y~~~~~~~--------------~~~~~~i~l~~~-~v~~~~~~~-~~~~~f~i~~~~~~~~f 76 (94)
T cd01250 13 NKEWKKRWFVLKNGQLTYHHRLKDYD--------------NAHVKEIDLRRC-TVRHNGKQP-DRRFCFEVISPTKTWHF 76 (94)
T ss_pred CCCceEEEEEEeCCeEEEEcCCcccc--------------cccceEEeccce-EEecCcccc-CCceEEEEEcCCcEEEE
Confidence 45799999999866666533322100 112234555432 233332221 14678888877776799
Q ss_pred eecChhhhhhHHHHHHH
Q 010976 461 VADSWEALDGWLDAIRL 477 (496)
Q Consensus 461 ~~~~~~~~~~~~~a~~~ 477 (496)
.|+|.+++..|++||+.
T Consensus 77 ~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 77 QADSEEERDDWISAIQE 93 (94)
T ss_pred ECCCHHHHHHHHHHHhc
Confidence 99999999999999963
No 293
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.45 E-value=1.1 Score=45.80 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=98.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-----CCC------------------
Q 010976 146 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CPT------------------ 202 (496)
Q Consensus 146 ~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-----~P~------------------ 202 (496)
-..++.+|-+.+++..++.++..+|+ ++.|.+.+++||-. .|.
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd--------------~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~ 95 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGD--------------HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYR 95 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCc
Confidence 34568899999999999999999999 88888888887643 111
Q ss_pred ---CH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHccCcchHHHhhhh
Q 010976 203 ---LH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQA-LNNWGLALQELSAIVPAREKQTI 274 (496)
Q Consensus 203 ---~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-~~~a-~~~lg~~l~~~g~~~~A~~~~~~ 274 (496)
|- .+.+.....+.+ .|-+.-|+ +.++-.+.+||. ++-. ++.+-....+.+++
T Consensus 96 ~~eNR~fflal~r~i~~L~~----RG~~rTAl-------E~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y--------- 155 (360)
T PF04910_consen 96 RPENRQFFLALFRYIQSLGR----RGCWRTAL-------EWCKLLLSLDPDEDPLGVLLFIDYYALRSRQY--------- 155 (360)
T ss_pred cccchHHHHHHHHHHHHHHh----cCcHHHHH-------HHHHHHHhcCCCCCcchhHHHHHHHHHhcCCH---------
Confidence 11 123333444444 66666666 899999999998 6654 44445555566666
Q ss_pred HHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 275 VRTAISKFRAAIQLQF-----DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 275 ~~~Ai~~~~~Al~l~P-----~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
+-=+..++....... .-|...+.++.+++.+++..... .............|...+.+|+..-|...
T Consensus 156 -~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~----~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 156 -QWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQ----SSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred -HHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccc----cccccccccchhHHHHHHHHHHHHhHHHH
Confidence 555555555443111 13456778888888888741000 00001111123556666777776666443
No 294
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.39 E-value=0.18 Score=52.05 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010976 140 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK 219 (496)
Q Consensus 140 ~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~ 219 (496)
.-...|+.|+...+.|...|.++.....+.+. +.+--+.|.+++..+|++++.|..-+.-.+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~--------------~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe--- 151 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKT--------------YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE--- 151 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCchhHHhhhhhHHh---
Confidence 34568999999999999999999999999888 9999999999999999999999988877777
Q ss_pred HcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976 220 MRGR-TKEAEELWKQATKNYEKAVQLNWNSPQALN 253 (496)
Q Consensus 220 ~~g~-~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~ 253 (496)
.+. .+.|. ..+.++|+.+|+++..|.
T Consensus 152 -~n~ni~saR-------alflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 152 -INLNIESAR-------ALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred -hccchHHHH-------HHHHHHhhcCCCChHHHH
Confidence 554 66666 899999999999988764
No 295
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.36 Score=46.02 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=115.9
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHH-HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLE-EACKKYDEATRLCPTLHDAFYNWAIA 213 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~Al~l~P~~~~a~~~lg~~ 213 (496)
..++.+-++++.+.+.-+|.+..+|..+-.+....|+ +. .-+++...++..+..+..+|..+-.+
T Consensus 91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d--------------~s~rELef~~~~l~~DaKNYHaWshRqW~ 156 (318)
T KOG0530|consen 91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGD--------------PSFRELEFTKLMLDDDAKNYHAWSHRQWV 156 (318)
T ss_pred HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC--------------cccchHHHHHHHHhccccchhhhHHHHHH
Confidence 3678889999999999999999999999999999998 77 78899999999999999999999988
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976 214 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 293 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~ 293 (496)
... .+.++.-+ .+..+.|+.|-.|-.+|+..-.+........ ....++.-+.+..+.|.+.|+|.
T Consensus 157 ~r~----F~~~~~EL-------~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~----~~~~le~El~yt~~~I~~vP~Ne 221 (318)
T KOG0530|consen 157 LRF----FKDYEDEL-------AYADELLEEDIRNNSAWNQRYFVITNTKGVI----SKAELERELNYTKDKILLVPNNE 221 (318)
T ss_pred HHH----HhhHHHHH-------HHHHHHHHHhhhccchhheeeEEEEeccCCc----cHHHHHHHHHHHHHHHHhCCCCc
Confidence 888 77777777 8888899888777777776654444422221 11223556677888899999999
Q ss_pred HHHHHHHHHHHH-cc
Q 010976 294 RAIYNLGTVLYG-LA 307 (496)
Q Consensus 294 ~a~~~lg~~~~~-~g 307 (496)
.+|+.|.-++.. .|
T Consensus 222 SaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 222 SAWNYLKGLLELDSG 236 (318)
T ss_pred cHHHHHHHHHHhccC
Confidence 999999888875 44
No 296
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.29 Score=51.57 Aligned_cols=127 Identities=15% Similarity=0.011 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYN--WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 263 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~--lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 263 (496)
-.-++..+...+.++|.++..+.. +...+.. .+....+. .....++..||.+..++.+||.++...|
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~----~~~~~~~~-------~~~~~~l~~~~~~~~~~~~L~~ale~~~ 115 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAFLSILLAP----LADSTLAF-------LAKRIPLSVNPENCPAVQNLAAALELDG 115 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHHHHhhccc----cccchhHH-------HHHhhhHhcCcccchHHHHHHHHHHHhh
Confidence 334677777777889998877433 4777777 88886766 6889999999999999999999999888
Q ss_pred CcchHHHhhhhHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 010976 264 AIVPAREKQTIVRTAIS-KFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 342 (496)
Q Consensus 264 ~~~~A~~~~~~~~~Ai~-~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 342 (496)
.. -.++. ..+.+....|++......+-.+|. .++....... -.++..+++++..+.
T Consensus 116 ~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~------------~~~~~~~l~~~~d~~ 172 (620)
T COG3914 116 LQ----------FLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGR------------TAEAELALERAVDLL 172 (620)
T ss_pred hH----------HHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhcc------------HHHHHHHHHHHHHhh
Confidence 77 55554 445599999999998888855555 5543332222 355666677788888
Q ss_pred CcHH
Q 010976 343 PSYS 346 (496)
Q Consensus 343 p~~~ 346 (496)
|.++
T Consensus 173 p~~~ 176 (620)
T COG3914 173 PKYP 176 (620)
T ss_pred hhhh
Confidence 8776
No 297
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.32 E-value=0.045 Score=36.29 Aligned_cols=36 Identities=33% Similarity=0.328 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 010976 204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 243 (496)
Q Consensus 204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~ 243 (496)
+.++.++|.+|.. +|++++|+..+++++..+++.+.
T Consensus 2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 2 ASALNNLANAYRA----QGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHh----hhhcchhhHHHHHHHHHHHHHhc
Confidence 4678999999999 99999999999999988888754
No 298
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=95.17 E-value=0.044 Score=44.09 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=63.0
Q ss_pred ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCC----CCCCCCeeeEeecC
Q 010976 380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL----TLPPGAGLCIETIH 455 (496)
Q Consensus 380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 455 (496)
....|.+++|+|....|.-...... .........|++.++ .|....+. ..+..+.|.|.+..
T Consensus 13 ~~~~wk~r~~vL~~~~L~~~~~~~~-------------~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~ 78 (104)
T PF00169_consen 13 SRKKWKKRYFVLRDSYLLYYKSSKD-------------KSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPN 78 (104)
T ss_dssp SSSSEEEEEEEEETTEEEEESSTTT-------------TTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETT
T ss_pred CCCCeEEEEEEEECCEEEEEecCcc-------------ccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCC
Confidence 3458999999998766554433321 011245678888888 66655554 46689999999888
Q ss_pred C-ceeeeecChhhhhhHHHHHHHH
Q 010976 456 G-PVFLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 456 ~-~~~~~~~~~~~~~~~~~a~~~~ 478 (496)
+ ..+|.++|.+++..|.++|..+
T Consensus 79 ~~~~~~~~~s~~~~~~W~~~i~~~ 102 (104)
T PF00169_consen 79 GKSYLFSAESEEERKRWIQAIQKA 102 (104)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHH
Confidence 8 6799999999999999999876
No 299
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.15 E-value=0.1 Score=54.08 Aligned_cols=91 Identities=23% Similarity=0.128 Sum_probs=76.8
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
.+....|+..|.+++...|.....+.+++.++.+.+- .++.-.|+..+..|++++|....+|+.|+.++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW-----------~~d~~~AlrDch~Alrln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKW-----------RGDSYLALRDCHVALRLNPSIQKAHFRLARAL 455 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhc-----------cccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999988764 12266788999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976 215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 247 (496)
Q Consensus 215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~ 247 (496)
.. ++++.+|+ .+...+....|.
T Consensus 456 ~e----l~r~~eal-------~~~~alq~~~Pt 477 (758)
T KOG1310|consen 456 NE----LTRYLEAL-------SCHWALQMSFPT 477 (758)
T ss_pred HH----HhhHHHhh-------hhHHHHhhcCch
Confidence 99 99999999 455444455553
No 300
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.11 E-value=0.22 Score=51.44 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
...-...|++|+...+.+...|.++...... .+.+.+-. ..|.+++..+|+++..|..-+.-.+..+..
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk----~~~~~~v~-------ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n 155 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKK----KKTYGEVK-------KIFAAMLAKHPNNPDLWIYAAKWEFEINLN 155 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCchhHHhhhhhHHhhccc
Confidence 4556788999999999999999998766665 55566655 899999999999999999999888887772
Q ss_pred chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976 266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 300 (496)
Q Consensus 266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg 300 (496)
++.|.+.|.++|+.+|+++..|...=
T Consensus 156 ---------i~saRalflrgLR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 156 ---------IESARALFLRGLRFNPDSPKLWKEYF 181 (568)
T ss_pred ---------hHHHHHHHHHHhhcCCCChHHHHHHH
Confidence 39999999999999999998776543
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.09 E-value=0.1 Score=37.17 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258 (496)
Q Consensus 205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 258 (496)
+.+|.++..+.. +|+|.+|. .+.+.+|+++|+|.++......+
T Consensus 2 d~lY~lAig~yk----l~~Y~~A~-------~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYK----LGEYEKAR-------RYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHH----TT-HHHHH-------HHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHH----hhhHHHHH-------HHHHHHHhhCCCcHHHHHHHHHH
Confidence 467899999999 99999999 89999999999999987665544
No 302
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.92 E-value=0.79 Score=38.39 Aligned_cols=90 Identities=20% Similarity=0.157 Sum_probs=66.4
Q ss_pred hHhhccHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh
Q 010976 132 RSRQRILTFAAKRYANAIERNPE------------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 199 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 199 (496)
....|.|++|...|++|....-. ++-++..|+..+..+|+ |++++..-+++|..
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr--------------y~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR--------------YDECLQSADRALRY 84 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHH
Confidence 34458899999999999987522 34567788899999999 99999888888865
Q ss_pred -------CCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010976 200 -------CPTL----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 239 (496)
Q Consensus 200 -------~P~~----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~ 239 (496)
+.+. ..+.++++.++.. +|+.++|++.|+.|.+...
T Consensus 85 FNRRGEL~qdeGklWIaaVfsra~Al~~----~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 85 FNRRGELHQDEGKLWIAAVFSRAVALEG----LGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHH--TTSTHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHH
T ss_pred HhhccccccccchhHHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHH
Confidence 4443 3456889999999 9999999976666655543
No 303
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.5 Score=47.84 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=110.3
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
+..+++-+.+...+++.+|+...+|+.+..++.+.+. .++..=++.++++++.||.+..+|..+-.+.
T Consensus 88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~------------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~ 155 (421)
T KOG0529|consen 88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH------------SDWNTELQLCEKALKQDPRNFHAWHYRRFVV 155 (421)
T ss_pred HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHhcCcccccchHHHHHHH
Confidence 4567888899999999999999999999999998776 2378889999999999999999888776666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHH---hhhhHHHHHHHHHHHHHhcCC
Q 010976 215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE---KQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~---~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
.. .... .....+-++...++|.-|+.|..+|.+...++..+-.- ++.. ....+..-+..-..|+-.+|+
T Consensus 156 ~~----~~~~---~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~-~~~g~~~~~~~l~sEle~v~saiFTdp~ 227 (421)
T KOG0529|consen 156 EQ----AERS---RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK-EADGNFMPKELLQSELEMVHSAIFTDPE 227 (421)
T ss_pred HH----Hhcc---cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc-cccCccCCHHHHHHHHHHHHHHHhcCcc
Confidence 55 2222 00122223788999999999999999999888754321 0000 122345666777888888999
Q ss_pred CHHHHHHHHH
Q 010976 292 FHRAIYNLGT 301 (496)
Q Consensus 292 ~~~a~~~lg~ 301 (496)
+..+|+..-+
T Consensus 228 DqS~WfY~rW 237 (421)
T KOG0529|consen 228 DQSCWFYHRW 237 (421)
T ss_pred ccceeeehHH
Confidence 9999887333
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.79 E-value=2.1 Score=37.96 Aligned_cols=84 Identities=18% Similarity=0.023 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 236 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~ 236 (496)
.++..+..+-...++ .+++...+...--+.|+.+..-..-|..+.. .|++.+|+ .
T Consensus 11 ~gLie~~~~al~~~~--------------~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~----r~~w~dA~-------r 65 (160)
T PF09613_consen 11 GGLIEVLSVALRLGD--------------PDDAEALLDALRVLRPEFPELDLFDGWLHIV----RGDWDDAL-------R 65 (160)
T ss_pred HHHHHHHHHHHccCC--------------hHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hCCHHHHH-------H
Confidence 345555666666677 9999999999999999999999999999999 99999999 8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 237 NYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 237 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
.++...+..|..+.+.-.++.|++.+|+.
T Consensus 66 lLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 66 LLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 99998888999999999999999999985
No 305
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.77 E-value=1.2 Score=45.47 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=72.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-------CC------------CC---HHHHH
Q 010976 196 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-------NW------------NS---PQALN 253 (496)
Q Consensus 196 Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l-------~P------------~~---~~a~~ 253 (496)
.++.+|.+.+++..++.++.. +|+...|.+..++|+-.|++++.- ++ .| ..+++
T Consensus 32 ll~~~PyHidtLlqls~v~~~----~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQ----QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 345689999999999999999 999999999999999999977622 21 12 23556
Q ss_pred HHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHH
Q 010976 254 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVL 303 (496)
Q Consensus 254 ~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~lg~~~ 303 (496)
.....+.+.|-+ ..|.++.+-.+.+||. ++-.....-..|
T Consensus 108 r~i~~L~~RG~~----------rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ 148 (360)
T PF04910_consen 108 RYIQSLGRRGCW----------RTALEWCKLLLSLDPDEDPLGVLLFIDYY 148 (360)
T ss_pred HHHHHHHhcCcH----------HHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 666677777777 9999999999999998 775444333333
No 306
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.69 E-value=0.16 Score=36.17 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 213 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 213 (496)
+.+|.+|..++++|+ |++|..+.+.+|+++|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~--------------Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGE--------------YEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhh--------------HHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467899999999999 9999999999999999998876654433
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.61 E-value=1.8 Score=38.49 Aligned_cols=82 Identities=17% Similarity=0.042 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976 206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 285 (496)
Q Consensus 206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A 285 (496)
.+..+..+-.. .++.+++. ..+...-.+.|+.+..-..-|.++...|++ .+|+..|+.+
T Consensus 12 gLie~~~~al~----~~~~~D~e-------~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w----------~dA~rlLr~l 70 (160)
T PF09613_consen 12 GLIEVLSVALR----LGDPDDAE-------ALLDALRVLRPEFPELDLFDGWLHIVRGDW----------DDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHc----cCChHHHH-------HHHHHHHHhCCCchHHHHHHHHHHHHhCCH----------HHHHHHHHHH
Confidence 34444444445 77888887 777777789999999999999999999999 9999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcch
Q 010976 286 IQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 286 l~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
..-.|..+.+--.++.|++.+++
T Consensus 71 ~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 71 EERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred hccCCCChHHHHHHHHHHHHcCC
Confidence 99999999999999999999997
No 308
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.53 E-value=0.063 Score=42.58 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=49.5
Q ss_pred hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCC-ceee
Q 010976 382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG-PVFL 460 (496)
Q Consensus 382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 460 (496)
..|.++||+|....|..+....... ......|++.+.. ++... . ..+.|.|.+..+ ..+|
T Consensus 13 ~~W~~r~~vl~~~~L~~~~~~~~~~--------------~~~~~~i~l~~~~-~~~~~--~--~~~~F~i~~~~~~~~~~ 73 (91)
T cd01246 13 KGWQKRWFVLDNGLLSYYKNKSSMR--------------GKPRGTILLSGAV-ISEDD--S--DDKCFTIDTGGDKTLHL 73 (91)
T ss_pred CCceeeEEEEECCEEEEEecCccCC--------------CCceEEEEeceEE-EEECC--C--CCcEEEEEcCCCCEEEE
Confidence 5899999999866665543322210 1223345555432 22211 1 257899988774 4599
Q ss_pred eecChhhhhhHHHHHHH
Q 010976 461 VADSWEALDGWLDAIRL 477 (496)
Q Consensus 461 ~~~~~~~~~~~~~a~~~ 477 (496)
.|+|.+++..|+.||+-
T Consensus 74 ~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 74 RANSEEERQRWVDALEL 90 (91)
T ss_pred ECCCHHHHHHHHHHHHh
Confidence 99999999999999974
No 309
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=94.08 E-value=0.11 Score=41.17 Aligned_cols=86 Identities=24% Similarity=0.336 Sum_probs=59.8
Q ss_pred ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC-CCCCCeeeEeecCC-c
Q 010976 380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT-LPPGAGLCIETIHG-P 457 (496)
Q Consensus 380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~ 457 (496)
....|.+++++|....+.-........ .......|++.++ ++....+.. .+...+|.+.+..+ .
T Consensus 14 ~~~~~~~~~~~L~~~~l~~~~~~~~~~-------------~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~ 79 (102)
T smart00233 14 KKKSWKKRYFVLFNSTLLYYKSEKAKK-------------DYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRS 79 (102)
T ss_pred ccCCceEEEEEEECCEEEEEeCCCccc-------------cCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCce
Confidence 345799999999876555433322210 0344667888877 666555543 34567888887777 6
Q ss_pred eeeeecChhhhhhHHHHHHHHH
Q 010976 458 VFLVADSWEALDGWLDAIRLVY 479 (496)
Q Consensus 458 ~~~~~~~~~~~~~~~~a~~~~~ 479 (496)
.+|.++|.+++..|.++|+.+.
T Consensus 80 ~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 80 YLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEEEcCCHHHHHHHHHHHHHhh
Confidence 6899999999999999998753
No 310
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.08 E-value=1.2 Score=50.63 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=89.2
Q ss_pred chhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010976 181 SKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 257 (496)
Q Consensus 181 ~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 257 (496)
...+.|++|+..|++.-.-.|.. .++.+..|+.+...+...|+. +.|.+|+.-|++. .-.|.-|--|...+.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYL-HGGVGAPLEYLGKAL 560 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHh-cCCCCCchHHHhHHH
Confidence 34678999999999999999874 578999999999866666654 5667777888764 445777888999999
Q ss_pred HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307 (496)
Q Consensus 258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g 307 (496)
+|+.+|++ ++-+++|.-|++..|+++.+-...-.+.+++.
T Consensus 561 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 561 VYQRLGEY----------NEEIKSLLLALKRYSQHPEISRLRDHLVYRLH 600 (932)
T ss_pred HHHHhhhH----------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 99999999 99999999999999998876555555555444
No 311
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.03 E-value=0.084 Score=45.08 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=47.3
Q ss_pred hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCC-----
Q 010976 382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG----- 456 (496)
Q Consensus 382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 456 (496)
..|.++||+|....|........ ......|+|.++ .|+.+.+..- .+.|.|.+..+
T Consensus 14 ~~WkkRwfvL~~~~L~yyk~~~~----------------~~~~g~I~L~~~-~v~~~~~~~~--~~~F~i~~~~~~~~i~ 74 (125)
T cd01252 14 KTWKRRWFILTDNCLYYFEYTTD----------------KEPRGIIPLENV-SIREVEDPSK--PFCFELFSPSDKQQIK 74 (125)
T ss_pred CCeEeEEEEEECCEEEEEcCCCC----------------CCceEEEECCCc-EEEEcccCCC--CeeEEEECCccccccc
Confidence 57999999998666655432211 123456677643 3444433222 23444433222
Q ss_pred ---------------ce-eeeecChhhhhhHHHHHHHH
Q 010976 457 ---------------PV-FLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 457 ---------------~~-~~~~~~~~~~~~~~~a~~~~ 478 (496)
.+ ||-|+|.+++..|++||+-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~ 112 (125)
T cd01252 75 ACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKAS 112 (125)
T ss_pred cccccccccccccCceEEEEECCCHHHHHHHHHHHHHH
Confidence 35 48899999999999999754
No 312
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=2.3 Score=44.11 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=96.7
Q ss_pred hhHhhccHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC
Q 010976 131 GRSRQRILTFAAKRYANAIERN---PE-------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200 (496)
Q Consensus 131 ~~~~~g~~~~Ai~~~~~al~~~---P~-------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 200 (496)
+..-.|++.+|+.......... |. .+..++.+|.....-+. ++.|...|..|+++-
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~--------------~enAe~hf~~a~k~t 397 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNC--------------YENAEFHFIEATKLT 397 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcch--------------HHHHHHHHHHHHHhh
Confidence 3444699999998877776543 44 35677788888888888 999999999999984
Q ss_pred CC-C--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHccCcch
Q 010976 201 PT-L--HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----------PQALNNWGLALQELSAIVP 267 (496)
Q Consensus 201 P~-~--~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~----------~~a~~~lg~~l~~~g~~~~ 267 (496)
-. + +.+..|+++.|.. .|+-+.-. +-.=.+.|.| ..+++-.|...+..+++
T Consensus 398 ~~~dl~a~~nlnlAi~YL~----~~~~ed~y----------~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~l-- 461 (629)
T KOG2300|consen 398 ESIDLQAFCNLNLAISYLR----IGDAEDLY----------KALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDL-- 461 (629)
T ss_pred hHHHHHHHHHHhHHHHHHH----hccHHHHH----------HHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccH--
Confidence 43 2 3456788999988 77543322 2222334442 34567777777888888
Q ss_pred HHHhhhhHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcchhH
Q 010976 268 AREKQTIVRTAISKFRAAIQLQFD------FHRAIYNLGTVLYGLAEDT 310 (496)
Q Consensus 268 A~~~~~~~~~Ai~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~~~ 310 (496)
.+|....++.|+..-. ..-.+..||.+....|+..
T Consensus 462 --------nEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~ 502 (629)
T KOG2300|consen 462 --------NEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTV 502 (629)
T ss_pred --------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 9999999999988611 1223445666777777643
No 313
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.01 E-value=0.089 Score=49.02 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=54.2
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHH
Q 010976 134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD 205 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~ 205 (496)
..++.+.|.+.|.+++.+.|+....|+.+|....+.|+ ++.|.+.|++.++++|.+..
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~--------------~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE--------------FDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc--------------HHHHHHHHHHHHcCCccccc
Confidence 45888999999999999999999999999999999999 99999999999999998653
No 314
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.96 E-value=0.086 Score=49.13 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010976 185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 250 (496)
Q Consensus 185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~ 250 (496)
+.+.|.+.|.+++++.|.....|+.+|..... .|+++.|. +.|++.++++|.+..
T Consensus 10 D~~aaaely~qal~lap~w~~gwfR~g~~~ek----ag~~daAa-------~a~~~~L~ldp~D~~ 64 (287)
T COG4976 10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEK----AGEFDAAA-------AAYEEVLELDPEDHG 64 (287)
T ss_pred ChHHHHHHHHHHhhcCchhhhhhhhcchhhhh----cccHHHHH-------HHHHHHHcCCccccc
Confidence 39999999999999999999999999999988 99999988 899999999997643
No 315
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=0.29 Score=47.07 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=65.6
Q ss_pred HHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC
Q 010976 121 INSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200 (496)
Q Consensus 121 ~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 200 (496)
+.+.+...-..+...++++.|..+.++.+.++|+++.-+...|.+|.++|. +..|++.++..++.+
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c--------------~~vAl~dl~~~~~~~ 245 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC--------------YHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC--------------chhhHHHHHHHHHhC
Confidence 333333333445667899999999999999999999999999999999999 999999999999999
Q ss_pred CCCHHHHHHHHHH
Q 010976 201 PTLHDAFYNWAIA 213 (496)
Q Consensus 201 P~~~~a~~~lg~~ 213 (496)
|+.+.+-.-....
T Consensus 246 P~~~~a~~ir~~l 258 (269)
T COG2912 246 PDDPIAEMIRAQL 258 (269)
T ss_pred CCchHHHHHHHHH
Confidence 9998776554433
No 316
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.76 E-value=0.5 Score=44.43 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC------CCHH
Q 010976 221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF------DFHR 294 (496)
Q Consensus 221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P------~~~~ 294 (496)
...+++|++.|.-|+-+++..-...-.-+..+..++.+|..+|+. .....-+..|...|++|++... +...
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~---~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE---ENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 446677776666666654432111112366788899999999985 4455556888888888887643 2357
Q ss_pred HHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 010976 295 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 344 (496)
Q Consensus 295 a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 344 (496)
+.|.+|.+..++|+ +.+|..+|.+.+...-.
T Consensus 167 l~YLigeL~rrlg~-------------------~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 167 LLYLIGELNRRLGN-------------------YDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCC-------------------HHHHHHHHHHHHcCCCC
Confidence 89999999999999 88999999888775443
No 317
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.69 E-value=1.8 Score=37.21 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976 155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWK 232 (496)
Q Consensus 155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~P~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 232 (496)
.....+++++++....+ ..+..+.+..++..++ -.|. .-+..|.|+..+++ +++|++++
T Consensus 31 s~~s~f~lAwaLV~S~~-----------~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR----lkeY~~s~---- 91 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRD-----------TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR----LKEYSKSL---- 91 (149)
T ss_pred hHHHHHHHHHHHHcccc-----------hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH----HhhHHHHH----
Confidence 35667888888877665 2348889999999997 5555 45678899999999 88888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976 233 QATKNYEKAVQLNWNSPQALNNWGLAL 259 (496)
Q Consensus 233 ~A~~~~~~Al~l~P~~~~a~~~lg~~l 259 (496)
.+.+..++.+|+|.++....-.+.
T Consensus 92 ---~yvd~ll~~e~~n~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 92 ---RYVDALLETEPNNRQALELKETIE 115 (149)
T ss_pred ---HHHHHHHhhCCCcHHHHHHHHHHH
Confidence 899999999999988775544443
No 318
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=93.66 E-value=0.47 Score=36.43 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976 221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264 (496)
Q Consensus 221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 264 (496)
.|++.+|+.+|++|++.+.+++...|+++.-......+...+.+
T Consensus 19 ~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 19 EGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988866655555444433
No 319
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=3.8 Score=36.86 Aligned_cols=136 Identities=19% Similarity=0.104 Sum_probs=98.7
Q ss_pred hccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----CHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDY--DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFY 208 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~--~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~~~a~~ 208 (496)
.+..++|+..|...-+-.-... -+....|.+..+.|+ -..|+..|..+-.-.|- .--+..
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgd--------------ta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGD--------------TAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhccc--------------HHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4667888888887766554333 355667889999999 99999999998776443 123455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976 209 NWAIAISDRAKMRGRTKEAEELWKQATKNYE-KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 287 (496)
Q Consensus 209 ~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~-~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~ 287 (496)
.-+.++.+ .|-|++-. ...+ -+..-+|--..+.-.||.+-++.|++ ..|...|.+...
T Consensus 137 raa~lLvD----~gsy~dV~-------srvepLa~d~n~mR~sArEALglAa~kagd~----------a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVD----NGSYDDVS-------SRVEPLAGDGNPMRHSAREALGLAAYKAGDF----------AKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhc----cccHHHHH-------HHhhhccCCCChhHHHHHHHHhHHHHhccch----------HHHHHHHHHHHc
Confidence 55677777 88888766 2222 12344566677888999999999999 999999999877
Q ss_pred hcCCCHHHHHHHHHHHHHc
Q 010976 288 LQFDFHRAIYNLGTVLYGL 306 (496)
Q Consensus 288 l~P~~~~a~~~lg~~~~~~ 306 (496)
+.+-++...+.+.++..+
T Consensus 196 -Da~aprnirqRAq~mldl 213 (221)
T COG4649 196 -DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred -cccCcHHHHHHHHHHHHH
Confidence 666677777777776654
No 320
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.56 E-value=2.1 Score=46.44 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHHHh----------cCCC-CHHHHHHHHHHHHHccCcchH
Q 010976 206 AFYNWAIAISDRAKMRGRTKEAEELW------KQATKNYEKAVQ----------LNWN-SPQALNNWGLALQELSAIVPA 268 (496)
Q Consensus 206 a~~~lg~~~~~~~~~~g~~~eA~~~~------~~A~~~~~~Al~----------l~P~-~~~a~~~lg~~l~~~g~~~~A 268 (496)
.|..-+.-+-. .|+|.+|.++| ++||..|.+.-. ..|+ -...+..+|.-|...|+..+|
T Consensus 826 ~yiakaedlde----hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 826 LYIAKAEDLDE----HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred HHHHhHHhHHh----hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHH
Confidence 34444555555 89999999887 678888876421 1232 245778888888889998766
Q ss_pred H---HhhhhHHHHHHHHH
Q 010976 269 R---EKQTIVRTAISKFR 283 (496)
Q Consensus 269 ~---~~~~~~~~Ai~~~~ 283 (496)
. -+.|++..|+..|+
T Consensus 902 e~~flea~d~kaavnmyk 919 (1636)
T KOG3616|consen 902 EEHFLEAGDFKAAVNMYK 919 (1636)
T ss_pred HHHHHhhhhHHHHHHHhh
Confidence 2 24556665555443
No 321
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=3 Score=46.99 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=32.0
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976 269 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307 (496)
Q Consensus 269 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g 307 (496)
++..|.+++-|..++.+|-+..-+...+..||.+|.+-.
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 346788899999999998888888888888888887665
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.55 E-value=0.15 Score=33.70 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976 249 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 289 (496)
Q Consensus 249 ~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~ 289 (496)
..+++++|.+|..+|++ ++|+.++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRY----------EEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhc----------chhhHHHHHHHHHH
Confidence 35789999999999999 99999999999863
No 323
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.39 E-value=8.5 Score=37.67 Aligned_cols=124 Identities=17% Similarity=0.003 Sum_probs=83.5
Q ss_pred HhhccHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhc-CCCCCCCCCcchhhhHHHHHHHHHHHHHhC---
Q 010976 133 SRQRILTFAAKRYANAIERN-PEDY-------DALYNWALVLQESA-DNVSLDSTSPSKDALLEEACKKYDEATRLC--- 200 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~-P~~~-------~a~~~lg~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~--- 200 (496)
.++|+++.|..+|.++-... ..++ +.+|+.|......+ + ++.|+..+++|+++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~--------------~~~a~~wL~~a~~~l~~~ 69 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK--------------YEEAVKWLQRAYDILEKP 69 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC--------------hHHHHHHHHHHHHHHHhh
Confidence 35789999999999987655 3333 45566666666666 6 999999999999882
Q ss_pred -C---CC-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHH
Q 010976 201 -P---TL-------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 269 (496)
Q Consensus 201 -P---~~-------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~ 269 (496)
. .. ..++..++.+|.. .+.++. +++|....+.+-...|+.+..+...=.++.+.++.
T Consensus 70 ~~~~~~~~~~~elr~~iL~~La~~~l~----~~~~~~----~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~---- 137 (278)
T PF08631_consen 70 GKMDKLSPDGSELRLSILRLLANAYLE----WDTYES----VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE---- 137 (278)
T ss_pred hhccccCCcHHHHHHHHHHHHHHHHHc----CCChHH----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh----
Confidence 1 11 2356667777776 666543 34455666666666787777775444555556776
Q ss_pred HhhhhHHHHHHHHHHHHHh
Q 010976 270 EKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 270 ~~~~~~~~Ai~~~~~Al~l 288 (496)
+++.+.+.+.+.-
T Consensus 138 ------~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 138 ------EEYEEILMRMIRS 150 (278)
T ss_pred ------hHHHHHHHHHHHh
Confidence 7777777777764
No 324
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.10 E-value=0.12 Score=42.47 Aligned_cols=91 Identities=21% Similarity=0.347 Sum_probs=50.8
Q ss_pred hhccccCCCCCCCCCChhhhhhhccccchh-hhhhhc-cccccccccccCCCCCCCCCCCceeeeecCceeecccccCCC
Q 010976 365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHE-GLQQAS-KNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT 442 (496)
Q Consensus 365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (496)
+.|+|.... .....|+++||+|... .|..+. .+.. .....+|+..+ .|..|.-..
T Consensus 3 k~G~L~K~g-----~~~~~Wk~R~f~L~~~~~l~~yk~~~~~-----------------~~~~~i~l~~~-~v~~~~~~~ 59 (102)
T cd01241 3 KEGWLHKRG-----EYIKTWRPRYFLLKSDGSFIGYKEKPED-----------------GDPFLPPLNNF-SVAECQLMK 59 (102)
T ss_pred EEEEEEeec-----CCCCCCeeEEEEEeCCCeEEEEecCCCc-----------------cCccccccCCe-EEeeeeeee
Confidence 356665542 2456899999999843 344322 1111 01224555543 444444322
Q ss_pred C--CCCCeeeEeecC-C-c--eeeeecChhhhhhHHHHHHHH
Q 010976 443 L--PPGAGLCIETIH-G-P--VFLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 443 ~--~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~a~~~~ 478 (496)
+ +....|.|.+.+ . . .++.|+|.++++.|..||+=|
T Consensus 60 ~~~~~~~~F~i~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 60 TERPRPNTFIIRCLQWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred ccCCCcceEEEEeccCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 2 333466665211 1 1 255799999999999999754
No 325
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.92 E-value=2 Score=43.77 Aligned_cols=85 Identities=16% Similarity=0.062 Sum_probs=70.0
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHH
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNP--------ED----------YDALYNWALVLQESADNVSLDSTSPSKDALLEEAC 190 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P--------~~----------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~ 190 (496)
+...+++++|..|+..|..+|++.. .. ..+--.+..||..+++ .+-|+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk--------------pdlAL 248 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK--------------PDLAL 248 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC--------------CchHH
Confidence 4456678999999999999998752 11 1233467899999999 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976 191 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 231 (496)
Q Consensus 191 ~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 231 (496)
.+..+.|.++|.+..-+...+.+... +.+|.+|-.-+
T Consensus 249 nh~hrsI~lnP~~frnHLrqAavfR~----LeRy~eAarSa 285 (569)
T PF15015_consen 249 NHSHRSINLNPSYFRNHLRQAAVFRR----LERYSEAARSA 285 (569)
T ss_pred HHHhhhhhcCcchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 99999999999999999999999998 88888887433
No 326
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.80 E-value=8.8 Score=40.93 Aligned_cols=165 Identities=10% Similarity=-0.017 Sum_probs=117.9
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 010976 134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTLHDAFYNWAI 212 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~P~~~~a~~~lg~ 212 (496)
..|+++.....|++++--...+.+.|...+.-....|+ .+-|-..+.++.++ .|+.+..+...+.
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~--------------~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD--------------VSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc--------------hhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35899999999999998888899999999999988888 88888888888887 6677777777776
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh---c
Q 010976 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL---Q 289 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l---~ 289 (496)
.--. .|++..|. ..|++..+--|+...+-.........+|+. +.+.. +...+.. .
T Consensus 375 f~e~----~~n~~~A~-------~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~----------~~~~~-~~~l~s~~~~~ 432 (577)
T KOG1258|consen 375 FEES----NGNFDDAK-------VILQRIESEYPGLVEVVLRKINWERRKGNL----------EDANY-KNELYSSIYEG 432 (577)
T ss_pred HHHh----hccHHHHH-------HHHHHHHhhCCchhhhHHHHHhHHHHhcch----------hhhhH-HHHHHHHhccc
Confidence 6666 88888888 788888877799988888888888888887 55553 2222222 1
Q ss_pred CCCH----HHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 010976 290 FDFH----RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 352 (496)
Q Consensus 290 P~~~----~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al 352 (496)
-.+. ..+.+.....+...++ -..|...+.++....|++..+...+
T Consensus 433 ~~~~~i~~~l~~~~~r~~~~i~~d------------------~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARLRYKIRED------------------ADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcC------------------HHHHHHHHHHhhhcCCccHHHHHHH
Confidence 1222 2223333333222221 3567777888999999888544433
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.80 E-value=2.2 Score=36.64 Aligned_cols=83 Identities=22% Similarity=0.206 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH-hcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCc
Q 010976 247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ-LQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 324 (496)
Q Consensus 247 ~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~-l~P~-~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 324 (496)
-..+..++++.++....+. .+.++.+..++..++ -.|. .-+..|.|+..++++++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~-------~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke---------------- 86 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDT-------EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE---------------- 86 (149)
T ss_pred chHHHHHHHHHHHHcccch-------HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh----------------
Confidence 3577889999999987765 567899999999997 4554 34688899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Q 010976 325 NELYSQSAIYIAAAHALKPSYSVYSSALRLV 355 (496)
Q Consensus 325 ~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~ 355 (496)
|..+..|....++.+|++......-..+
T Consensus 87 ---Y~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 87 ---YSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred ---HHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 9999999999999999998655544433
No 328
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.54 E-value=1.2 Score=40.72 Aligned_cols=91 Identities=18% Similarity=0.140 Sum_probs=68.2
Q ss_pred hhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-CHHH
Q 010976 131 GRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDA 206 (496)
Q Consensus 131 ~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-~~~a 206 (496)
.....+++++|+..++.++...-+. .-+-.+|+.++.+++. +++|++.+..... ++ .+..
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k--------------~D~AL~~L~t~~~--~~w~~~~ 161 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK--------------ADAALKTLDTIKE--ESWAAIV 161 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHhcccc--ccHHHHH
Confidence 3455699999999999998654332 3456688999999999 9999988776532 22 2233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010976 207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 248 (496)
Q Consensus 207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~ 248 (496)
.-.+|.++.. .|+-++|+ ..|.++++.++..
T Consensus 162 ~elrGDill~----kg~k~~Ar-------~ay~kAl~~~~s~ 192 (207)
T COG2976 162 AELRGDILLA----KGDKQEAR-------AAYEKALESDASP 192 (207)
T ss_pred HHHhhhHHHH----cCchHHHH-------HHHHHHHHccCCh
Confidence 5668999999 99999999 7888888776443
No 329
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.48 E-value=2 Score=39.14 Aligned_cols=99 Identities=24% Similarity=0.137 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976 156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWK 232 (496)
Q Consensus 156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 232 (496)
-.++..+|..|.+.|+ +++|+++|.++...+.+ ..+.++++-.+... .+++........
T Consensus 36 r~~~~~l~~~~~~~Gd--------------~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ 97 (177)
T PF10602_consen 36 RMALEDLADHYCKIGD--------------LEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHHHHhhh--------------HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHH
Confidence 4678899999999999 99999999999887654 33566677777777 999999996666
Q ss_pred HHHHHHHHHHhcCCCCHHH----HHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976 233 QATKNYEKAVQLNWNSPQA----LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 287 (496)
Q Consensus 233 ~A~~~~~~Al~l~P~~~~a----~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~ 287 (496)
+|....++ ..+... ...-|..+...++| .+|-..|-.++.
T Consensus 98 ka~~~~~~-----~~d~~~~nrlk~~~gL~~l~~r~f----------~~AA~~fl~~~~ 141 (177)
T PF10602_consen 98 KAESLIEK-----GGDWERRNRLKVYEGLANLAQRDF----------KEAAELFLDSLS 141 (177)
T ss_pred HHHHHHhc-----cchHHHHHHHHHHHHHHHHHhchH----------HHHHHHHHccCc
Confidence 66555554 222332 23345666667777 888888877653
No 330
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.44 E-value=12 Score=39.48 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=88.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHcC
Q 010976 144 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRAKMRG 222 (496)
Q Consensus 144 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~~~~~g 222 (496)
.|++++..-+-.++.|+..+..+...++.+...+........-+++..+|++++..--. +...++.++.--..++. -.
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~-~n 345 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD-DN 345 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc-cc
Confidence 57777877888899999888877777765444455555555678899999999875322 33333333222111000 00
Q ss_pred CHHHHHHHHHH----------------------------HHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCcchHHHhhh
Q 010976 223 RTKEAEELWKQ----------------------------ATKNYEKAVQLNWNSPQALNNWGLA-LQELSAIVPAREKQT 273 (496)
Q Consensus 223 ~~~eA~~~~~~----------------------------A~~~~~~Al~l~P~~~~a~~~lg~~-l~~~g~~~~A~~~~~ 273 (496)
+++.-.+.+++ |...|.+|-+.--.....+..-|.+ |...++.
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~-------- 417 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDK-------- 417 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCCh--------
Confidence 11111111111 2233333332211111222111111 3334444
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHH
Q 010976 274 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 311 (496)
Q Consensus 274 ~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 311 (496)
.-|...|+--|+..++.+...+..-..+..++++..
T Consensus 418 --~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N 453 (656)
T KOG1914|consen 418 --ETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNN 453 (656)
T ss_pred --hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchh
Confidence 999999999999999999888888888888887543
No 331
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.33 E-value=0.17 Score=41.84 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=54.4
Q ss_pred hhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC---CCCeeeEeecCCcee
Q 010976 383 DWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP---PGAGLCIETIHGPVF 459 (496)
Q Consensus 383 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 459 (496)
.|+|.+++||...+.-... +. ...-.-.|||.+|.+|+.+....+| +.+.|.|.| +-.||
T Consensus 15 ~rKRhYWrLDsK~Itlf~~-e~---------------~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T-~~~vY 77 (117)
T cd01239 15 RRKKHYWRLDSKAITLYQE-ES---------------GSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRT-TTNVY 77 (117)
T ss_pred ceeeeEEEecCCeEEEEEc-CC---------------CCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEe-cCEEE
Confidence 5777888998776654322 11 1234779999999999988776543 777899998 66678
Q ss_pred eeecC---------------------hhhhhhHHHHHHH
Q 010976 460 LVADS---------------------WEALDGWLDAIRL 477 (496)
Q Consensus 460 ~~~~~---------------------~~~~~~~~~a~~~ 477 (496)
+|-.+ .+.+..|-.||+.
T Consensus 78 ~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~q 116 (117)
T cd01239 78 FVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQ 116 (117)
T ss_pred EecccccccCCCcccCCCCcccccchhHHHHHHHHHHhc
Confidence 88442 2334779999985
No 332
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.09 E-value=0.43 Score=46.42 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010976 234 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 305 (496)
Q Consensus 234 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~ 305 (496)
|..+|.+|+.+.|++...|+.||.+....|+. =.|+-+|-+++...--++.+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~----------l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDD----------LDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-H----------HHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccch----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45899999999999999999999999999998 999999999998876679999999999988
No 333
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.92 E-value=1.9 Score=42.02 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010976 155 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 234 (496)
Q Consensus 155 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A 234 (496)
...++..++..+...++ ++.++..+++.+.++|.+-.+|..+-.+|.. .|+...|+..|++.
T Consensus 152 ~~~~l~~lae~~~~~~~--------------~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~----~g~~~~ai~~y~~l 213 (280)
T COG3629 152 FIKALTKLAEALIACGR--------------ADAVIEHLERLIELDPYDEPAYLRLMEAYLV----NGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCchHHHHHHHHH
Confidence 45677788888889999 9999999999999999999999999999999 99999999888777
Q ss_pred HHHHHHHHhcCCC
Q 010976 235 TKNYEKAVQLNWN 247 (496)
Q Consensus 235 ~~~~~~Al~l~P~ 247 (496)
......-+..+|.
T Consensus 214 ~~~~~edlgi~P~ 226 (280)
T COG3629 214 KKTLAEELGIDPA 226 (280)
T ss_pred HHHhhhhcCCCcc
Confidence 7766666666664
No 334
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.59 E-value=7.6 Score=37.98 Aligned_cols=113 Identities=19% Similarity=0.118 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHH---hcCCCC---
Q 010976 184 ALLEEACKKYDEATRLC----PTL----HDAFYNWAIAISDRAKMRG-RTKEAEELWKQATKNYEKAV---QLNWNS--- 248 (496)
Q Consensus 184 ~~~~~A~~~~~~Al~l~----P~~----~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~~A~~~~~~Al---~l~P~~--- 248 (496)
|+++.|..+|.|+-.+. |+. +..+|+.|..+.. .+ ++++|...+++|.+.+++.- ...|+.
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 33999999999987764 332 3567888888888 89 99999999999999987643 333332
Q ss_pred -HHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976 249 -PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307 (496)
Q Consensus 249 -~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g 307 (496)
..++..++.+|...+.+ ..+++|+...+.+-.-.|+.+..+...-.++...+
T Consensus 83 r~~iL~~La~~~l~~~~~-------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~ 135 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTY-------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF 135 (278)
T ss_pred HHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC
Confidence 34677788888888775 23345666666665666877776644444444433
No 335
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=91.55 E-value=1.3 Score=34.23 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 250 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~ 250 (496)
-..|+.+..+|++.+ . .|++++|+.+|.+|++.|..++...|+...
T Consensus 3 ~~~a~~l~~~Ave~D---------------~----~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 3 ELAAKEVLKRAVELD---------------Q----EGRFQEALVCYQEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred hHHHHHHHHHHHHHH---------------H----hccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 445666666665543 3 999999999999999999999999986544
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.28 E-value=0.88 Score=46.90 Aligned_cols=125 Identities=10% Similarity=0.089 Sum_probs=84.8
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
.|++-.|-.....+++..|.++......+.+...+|+ |+.+...+.-+=.+-.....+...+-..+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~--------------ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGY--------------YEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhh--------------HHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 4788888888889999999999988899999999999 99988887666554333333444444445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976 215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 294 (496)
Q Consensus 215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~ 294 (496)
.. +|++++|. ..-...+.-.-.+++...--+..--.+|- ++++...+++.+.++|....
T Consensus 368 ~~----l~r~~~a~-------s~a~~~l~~eie~~ei~~iaa~sa~~l~~----------~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 368 HG----LARWREAL-------STAEMMLSNEIEDEEVLTVAAGSADALQL----------FDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred hc----hhhHHHHH-------HHHHHHhccccCChhheeeecccHHHHhH----------HHHHHHHHHHHhccCChhcc
Confidence 55 78888877 44444444443444444333333333344 49999999999998875443
No 337
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.22 E-value=0.34 Score=47.22 Aligned_cols=90 Identities=9% Similarity=0.018 Sum_probs=70.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCcchH
Q 010976 190 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN-WGLALQELSAIVPA 268 (496)
Q Consensus 190 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~-lg~~l~~~g~~~~A 268 (496)
+-.|.++....|+++..|...+..... .|-+.+-- ..|.++++.+|.+++.|.. -+.-+...+++
T Consensus 93 ~f~~~R~tnkff~D~k~w~~y~~Y~~k----~k~y~~~~-------nI~~~~l~khP~nvdlWI~~c~~e~~~~ani--- 158 (435)
T COG5191 93 IFELYRSTNKFFNDPKIWSQYAAYVIK----KKMYGEMK-------NIFAECLTKHPLNVDLWIYCCAFELFEIANI--- 158 (435)
T ss_pred eEeeehhhhcCCCCcHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHhcCCCCceeeeeeccchhhhhccH---
Confidence 335666777788999988887655555 44444444 8999999999999999876 55567777777
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976 269 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 300 (496)
Q Consensus 269 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg 300 (496)
+.+.+.|.++|+++|+++.+|+..-
T Consensus 159 -------~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 159 -------ESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred -------HHHHHHHHhhhccCCCCchHHHHHH
Confidence 9999999999999999998887543
No 338
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.88 E-value=9.6 Score=40.52 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=86.2
Q ss_pred chhhhHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC---
Q 010976 181 SKDALLEEACKKYDEATRL------------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--- 245 (496)
Q Consensus 181 ~~~~~~~~A~~~~~~Al~l------------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~--- 245 (496)
.+..-|++|...|.-|+.. .|.+.+.+..++.+... +|+.+-|....++++-.+++++.-.
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~----qgD~e~aadLieR~Ly~~d~a~hp~F~~ 324 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRF----QGDREMAADLIERGLYVFDRALHPNFIP 324 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHH----hcchhhHHHHHHHHHHHHHHHhcccccc
Confidence 4566799999999888776 56678889999999988 9999999999999999999988432
Q ss_pred -----------CCCH---HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcch
Q 010976 246 -----------WNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 246 -----------P~~~---~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~ 308 (496)
|.|- -+++..-..+.+.|-+ ..|.++++-.++++|. ++-+...+-.+|.-..+
T Consensus 325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~----------rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrar 392 (665)
T KOG2422|consen 325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW----------RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAR 392 (665)
T ss_pred ccccccCcccchhhHHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHH
Confidence 2221 1233333344444555 9999999999999998 88777766666665554
No 339
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.77 E-value=1.1 Score=51.67 Aligned_cols=109 Identities=20% Similarity=0.203 Sum_probs=89.2
Q ss_pred HHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 010976 186 LEEACK------KYD-EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGL 257 (496)
Q Consensus 186 ~~~A~~------~~~-~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 257 (496)
+.+|.+ .+. ..-.+.|.....|..|+.++.. +|++++|+..-++|.-.+++.+.++ |+....+.+++.
T Consensus 948 ~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 948 FSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred hhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 665655 555 3334588899999999999999 9999999988888888888888887 556788999999
Q ss_pred HHHHccCcchHHHhhhhHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcch
Q 010976 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~ 308 (496)
..+..++. ..|...+.++..+ .|.-.....|++.++...++
T Consensus 1024 ~~f~~~~~----------~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e 1072 (1236)
T KOG1839|consen 1024 YEFAVKNL----------SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE 1072 (1236)
T ss_pred HHHhccCc----------cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH
Confidence 98888888 8899988888876 45556677889999888887
No 340
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.62 E-value=7 Score=40.70 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=83.6
Q ss_pred hccHHHHHHHHHHHHHhCCC-CHH--HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH-hCCCC-------
Q 010976 135 QRILTFAAKRYANAIERNPE-DYD--ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPTL------- 203 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~-~~~--a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~P~~------- 203 (496)
.+.++.|...|..|+++--. +.. +..++|.+|...++ -+ .+.++++ +.|.+
T Consensus 380 v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~--------------~e----d~y~~ld~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 380 VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD--------------AE----DLYKALDLIGPLNTNSLSSQ 441 (629)
T ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc--------------HH----HHHHHHHhcCCCCCCcchHH
Confidence 48899999999999987533 333 44578999999888 33 2333333 34442
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCcchHHHhhhh
Q 010976 204 ---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW------NSPQALNNWGLALQELSAIVPAREKQTI 274 (496)
Q Consensus 204 ---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P------~~~~a~~~lg~~l~~~g~~~~A~~~~~~ 274 (496)
..++|..|...+. ++++.||. ...++.++..- -....+..||.+..-.|+.
T Consensus 442 ~l~a~~~~v~glfaf~----qn~lnEaK-------~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~--------- 501 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFK----QNDLNEAK-------RFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNT--------- 501 (629)
T ss_pred HHHHHHHHHHHHHHHH----hccHHHHH-------HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcch---------
Confidence 2356666666666 99999999 66666666541 1233456678888888888
Q ss_pred HHHHHHHHHHHHHhc---CCCHHHHH
Q 010976 275 VRTAISKFRAAIQLQ---FDFHRAIY 297 (496)
Q Consensus 275 ~~~Ai~~~~~Al~l~---P~~~~a~~ 297 (496)
.++....+-++.+. |+.+..+.
T Consensus 502 -~es~nmvrpamqlAkKi~Di~vqLw 526 (629)
T KOG2300|consen 502 -VESRNMVRPAMQLAKKIPDIPVQLW 526 (629)
T ss_pred -HHHHhccchHHHHHhcCCCchHHHH
Confidence 88888888888774 55544433
No 341
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.54 E-value=0.94 Score=44.01 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976 189 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 261 (496)
Q Consensus 189 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 261 (496)
|+.+|.+|+.+.|++...|+++|.++.. .|+.-.|+ -+|-+++-..--++.+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~----~~~~l~av-------y~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY----QGDDLDAV-------YYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc----ccchHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6889999999999999999999999999 99999998 78888886654468899999999888
No 342
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=4.7 Score=43.25 Aligned_cols=102 Identities=11% Similarity=0.061 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHH
Q 010976 114 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLE 187 (496)
Q Consensus 114 ~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 187 (496)
..+++.++..++=..+...++..+|..+++.|...+..-|.| +....+++.+|..+.+ ++
T Consensus 346 TkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q--------------LD 411 (872)
T KOG4814|consen 346 TKEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ--------------LD 411 (872)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH--------------HH
Confidence 445555666555555566777899999999999999987765 4567789999999999 99
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976 188 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 233 (496)
Q Consensus 188 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~ 233 (496)
.|.+++++|=+.+|.++-..+..-.+... .|.-.+|+.+...
T Consensus 412 ~A~E~~~EAE~~d~~~~l~q~~~~~~~~~----E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 412 NAVEVYQEAEEVDRQSPLCQLLMLQSFLA----EDKSEEALTCLQK 453 (872)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHH----hcchHHHHHHHHH
Confidence 99999999999999998877777666666 8888888855543
No 343
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.44 E-value=0.44 Score=37.03 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=51.4
Q ss_pred hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecC-Cceee
Q 010976 382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIH-GPVFL 460 (496)
Q Consensus 382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 460 (496)
..|.+++++|....+.-........ .......|++.+ ..+....+.. ...++|.|.+.+ ...+|
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~-------------~~~~~~~i~l~~-~~v~~~~~~~-~~~~~f~i~~~~~~~~~~ 78 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKK-------------SYKPKGSIPLSG-AEVEESPDDS-GRKNCFEIRTPDGRSYLL 78 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCc-------------CCCCcceEEcCC-CEEEECCCcC-CCCcEEEEecCCCcEEEE
Confidence 5799999999766655533222110 123345666665 3333332222 345778887766 45689
Q ss_pred eecChhhhhhHHHHHHH
Q 010976 461 VADSWEALDGWLDAIRL 477 (496)
Q Consensus 461 ~~~~~~~~~~~~~a~~~ 477 (496)
.+.|.+++..|.++|+.
T Consensus 79 ~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 79 QAESEEEREEWIEALQS 95 (96)
T ss_pred EeCCHHHHHHHHHHHhc
Confidence 99999999999999974
No 344
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.35 E-value=0.55 Score=45.83 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=70.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHcC
Q 010976 144 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN-WAIAISDRAKMRG 222 (496)
Q Consensus 144 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~-lg~~~~~~~~~~g 222 (496)
.|.++....|+++..|...+......+. +.+--..|.++++.+|.+.+.|.. -+.-+.. .+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~--------------y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~----~a 156 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKM--------------YGEMKNIFAECLTKHPLNVDLWIYCCAFELFE----IA 156 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCCceeeeeeccchhhh----hc
Confidence 4555666779999999999888888888 999999999999999999999876 2333444 77
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010976 223 RTKEAEELWKQATKNYEKAVQLNWNSPQALNN 254 (496)
Q Consensus 223 ~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~ 254 (496)
+++.+. ..|.+++.+||.++..|..
T Consensus 157 ni~s~R-------a~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 157 NIESSR-------AMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cHHHHH-------HHHHhhhccCCCCchHHHH
Confidence 888877 8999999999999887653
No 345
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.09 E-value=0.6 Score=38.26 Aligned_cols=84 Identities=13% Similarity=0.202 Sum_probs=48.7
Q ss_pred ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce-
Q 010976 380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV- 458 (496)
Q Consensus 380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 458 (496)
....|.+++++|....|.-+....... ... .....|++. .+.++.+.+.+ -+.++|.|.+.+|.+
T Consensus 19 ~~~~Wk~r~~vL~~~~L~~ykd~~~~~-----~~~-------~~~~~i~l~-~~~i~~~~~~~-k~~~~F~l~~~~~~~~ 84 (104)
T cd01253 19 SNRSWDNVYGVLCGQSLSFYKDEKMAA-----ENV-------HGEPPVDLT-GAQCEVASDYT-KKKHVFRLRLPDGAEF 84 (104)
T ss_pred CCCCcceEEEEEeCCEEEEEecCcccc-----cCC-------CCCCcEecc-CCEEEecCCcc-cCceEEEEEecCCCEE
Confidence 356899999999866554433221100 000 011123333 23333333322 234788887667655
Q ss_pred eeeecChhhhhhHHHHHHH
Q 010976 459 FLVADSWEALDGWLDAIRL 477 (496)
Q Consensus 459 ~~~~~~~~~~~~~~~a~~~ 477 (496)
+|-|+|.+++..|+.||+-
T Consensus 85 ~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 85 LFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred EEECCCHHHHHHHHHHHhc
Confidence 7779999999999999963
No 346
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=89.88 E-value=2.4 Score=32.50 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 248 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~ 248 (496)
++.|+.++.+|+..+ . .|++++|+.+|.+|++.|..++...|+.
T Consensus 3 ~~~A~~l~~~Av~~D---------------~----~g~y~eA~~~Y~~aie~l~~~~k~e~~~ 46 (75)
T cd02678 3 LQKAIELVKKAIEED---------------N----AGNYEEALRLYQHALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 567777777776543 3 9999999999999999999999998853
No 347
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.77 E-value=7.3 Score=42.28 Aligned_cols=104 Identities=20% Similarity=0.105 Sum_probs=64.7
Q ss_pred hhhcHHHHHHHHHHhhccc--hhhhHhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhh
Q 010976 110 LAEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERN--PEDYDALYNWALVLQESADNVSLDSTSPSKDAL 185 (496)
Q Consensus 110 ~~~~~~~A~~~~~~~l~~~--~~~~~~~g~~~~Ai~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 185 (496)
..|++++|..+|..+-..+ -.-+.+.|+|-.-.++++.--.-+ ..--+++.++|..+..+..
T Consensus 746 ~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~-------------- 811 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME-------------- 811 (1189)
T ss_pred hhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH--------------
Confidence 4577777777665544333 112333455554444443311111 1124688888888888888
Q ss_pred HHHHHHHHHHHH----------------------HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976 186 LEEACKKYDEAT----------------------RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 231 (496)
Q Consensus 186 ~~~A~~~~~~Al----------------------~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 231 (496)
+++|.++|.+.- .--|++...+-.+|.++.. .|.-++|.+.|
T Consensus 812 We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~s----vGMC~qAV~a~ 875 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTS----VGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHh----hchHHHHHHHH
Confidence 888888877642 1247777777788888888 88888888766
No 348
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=89.69 E-value=27 Score=37.01 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=57.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH
Q 010976 146 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK 225 (496)
Q Consensus 146 ~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~ 225 (496)
++-|+.||.|.++|+.|-.-+..+ . +++..+.|++.+...|..+.+|......... ..+|+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~--------------~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~----skdfe 70 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-P--------------IDKVRETYEQLVNVFPSSPRAWKLYIERELA----SKDFE 70 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-C--------------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hhhHH
Confidence 677899999999999988877766 6 9999999999999999999999877766666 67777
Q ss_pred HHHHHHHH
Q 010976 226 EAEELWKQ 233 (496)
Q Consensus 226 eA~~~~~~ 233 (496)
.-.++|.+
T Consensus 71 ~VEkLF~R 78 (656)
T KOG1914|consen 71 SVEKLFSR 78 (656)
T ss_pred HHHHHHHH
Confidence 76655544
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.58 E-value=10 Score=33.27 Aligned_cols=69 Identities=17% Similarity=0.088 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
+.++...+...--+.|+.+..-..-|.++.. .|++.+|+ ..++...+-.+..+.+.-.++.|+.-+|+.
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~----rg~w~eA~-------rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIA----RGNYDEAA-------RILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHH----cCCHHHHH-------HHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 9999999999999999999999999999999 99999999 888888888888898999999999999985
No 350
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.49 E-value=1.6 Score=35.05 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976 221 RGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 289 (496)
Q Consensus 221 ~g~~~eA~~~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~ 289 (496)
.|++.+|++.+.+..+......... -....++.++|.++...|++ ++|+..+++|+++-
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~----------~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY----------EEALQALEEAIRLA 71 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHH
Confidence 8999999977776655544332221 02356788999999999999 99999999999874
No 351
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.42 E-value=8.6 Score=33.72 Aligned_cols=71 Identities=13% Similarity=-0.074 Sum_probs=64.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976 221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 300 (496)
Q Consensus 221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg 300 (496)
.++++++. ..+...--+.|+.+..-..-|.++...|++ .+|+..|+...+-.+..+.+.-.++
T Consensus 23 ~~d~~D~e-------~lLdALrvLrP~~~e~d~~dg~l~i~rg~w----------~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 23 SADPYDAQ-------AMLDALRVLRPNLKELDMFDGWLLIARGNY----------DEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred cCCHHHHH-------HHHHHHHHhCCCccccchhHHHHHHHcCCH----------HHHHHHHHhhhccCCCchHHHHHHH
Confidence 77788877 677766678999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHcch
Q 010976 301 TVLYGLAE 308 (496)
Q Consensus 301 ~~~~~~g~ 308 (496)
.|++-+|+
T Consensus 86 ~CL~al~D 93 (153)
T TIGR02561 86 LCLNAKGD 93 (153)
T ss_pred HHHHhcCC
Confidence 99999997
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.31 E-value=1.4 Score=42.75 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=60.5
Q ss_pred hhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHH
Q 010976 111 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC 190 (496)
Q Consensus 111 ~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~ 190 (496)
-+..+-+..+|.+.++.....+...|.+.+|+.+.++++.++|-+...+..+-.+|..+|+ --.++
T Consensus 268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD--------------~is~~ 333 (361)
T COG3947 268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD--------------EISAI 333 (361)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc--------------chhhh
Confidence 3455566677888888888888888999999999999999999999999999999999999 55566
Q ss_pred HHHHHH
Q 010976 191 KKYDEA 196 (496)
Q Consensus 191 ~~~~~A 196 (496)
+.|++.
T Consensus 334 khyery 339 (361)
T COG3947 334 KHYERY 339 (361)
T ss_pred hHHHHH
Confidence 666554
No 353
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.15 E-value=12 Score=40.93 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHccCcchHHH---hhhhHHHHHHHHHHH------HH----hcCCC-HHHHHHHHHHHHHcchhHHh
Q 010976 249 PQALNNWGLALQELSAIVPARE---KQTIVRTAISKFRAA------IQ----LQFDF-HRAIYNLGTVLYGLAEDTLR 312 (496)
Q Consensus 249 ~~a~~~lg~~l~~~g~~~~A~~---~~~~~~~Ai~~~~~A------l~----l~P~~-~~a~~~lg~~~~~~g~~~~a 312 (496)
...|...+.-+-+.|++.+|.+ ..|..+.||..|.+. ++ ..|+. .+.+..+|.-|-..|+...+
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHH
Confidence 3455666777888888877733 556667777777663 22 23333 35566677777777764433
No 354
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.15 E-value=2.9 Score=40.37 Aligned_cols=63 Identities=17% Similarity=0.106 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010976 221 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 300 (496)
Q Consensus 221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg 300 (496)
.++++.|. .+-++.+.++|.++.-+.-.|.+|.++|.+ .-|+..+...++.-|+.+.+-.-..
T Consensus 194 e~~~~~al-------~~~~r~l~l~P~dp~eirDrGliY~ql~c~----------~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 194 ELQWELAL-------RVAERLLDLNPEDPYEIRDRGLIYAQLGCY----------HVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred hhchHHHH-------HHHHHHHhhCCCChhhccCcHHHHHhcCCc----------hhhHHHHHHHHHhCCCchHHHHHHH
Confidence 77777777 899999999999999999999999999999 9999999999999999887654433
No 355
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.08 E-value=16 Score=37.94 Aligned_cols=118 Identities=15% Similarity=-0.016 Sum_probs=76.8
Q ss_pred hhHhhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHH--HHHHHHHh--------
Q 010976 131 GRSRQRI-LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK--KYDEATRL-------- 199 (496)
Q Consensus 131 ~~~~~g~-~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~Al~l-------- 199 (496)
.+.+.|. -++|+..++.+++..|.+....+..-.. .+ .. |.+|+. .+.+.+.+
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f-vK-q~--------------Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF-VK-QA--------------YKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH-HH-HH--------------HHHHHhhhhHHHHHHHHHHHHhcC
Confidence 3445555 7899999999999999987554322111 11 11 444332 22222222
Q ss_pred -CC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhH
Q 010976 200 -CP---TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV 275 (496)
Q Consensus 200 -~P---~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~ 275 (496)
-| .+.+.-+.|+.+-+- +.+|+|.++. -+..-..++.| ++.++..+|.++....+|
T Consensus 452 l~~i~i~e~eian~LaDAEyL--ysqgey~kc~-------~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y---------- 511 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYL--YSQGEYHKCY-------LYSSWLTKIAP-SPQAYRLLGLCLMENKRY---------- 511 (549)
T ss_pred CCcccccHHHHHHHHHHHHHH--HhcccHHHHH-------HHHHHHHHhCC-cHHHHHHHHHHHHHHhhH----------
Confidence 22 244445555544221 2388888888 56666778999 999999999999999999
Q ss_pred HHHHHHHHH
Q 010976 276 RTAISKFRA 284 (496)
Q Consensus 276 ~~Ai~~~~~ 284 (496)
++|..++..
T Consensus 512 ~eA~~~l~~ 520 (549)
T PF07079_consen 512 QEAWEYLQK 520 (549)
T ss_pred HHHHHHHHh
Confidence 999888765
No 356
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.05 E-value=26 Score=34.90 Aligned_cols=107 Identities=19% Similarity=0.081 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh----cC------------CCCH
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ----LN------------WNSP 249 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~----l~------------P~~~ 249 (496)
..+-|+.-..|+++||..+.+|..|+.-- .--..+|.+.|++|++.-+.... +. ..+.
T Consensus 200 p~~RI~~A~~ALeIN~eCA~AyvLLAEEE------a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnv 273 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNECATAYVLLAEEE------ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNV 273 (556)
T ss_pred cHHHHHHHHHHHhcCchhhhHHHhhhhhh------hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccch
Confidence 77788889999999999999998877543 33456777777776654333322 11 1122
Q ss_pred H--HHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcch
Q 010976 250 Q--ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF--HRAIYNLGTVLYGLAE 308 (496)
Q Consensus 250 ~--a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~--~~a~~~lg~~~~~~g~ 308 (496)
. ....|+.|-.++|+. .+|++.|+...+-.|-. -.++-||-.++..+.-
T Consensus 274 l~YIKRRLAMCARklGrl----------rEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA 326 (556)
T KOG3807|consen 274 LVYIKRRLAMCARKLGRL----------REAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA 326 (556)
T ss_pred hhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 2 234566666667776 99999999988777632 2456677666666654
No 357
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.97 E-value=15 Score=39.17 Aligned_cols=162 Identities=7% Similarity=0.017 Sum_probs=119.8
Q ss_pred cHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHhcCCCCCCCCCcchhh
Q 010976 113 QNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER-----NPE---DYDALYNWALVLQESADNVSLDSTSPSKDA 184 (496)
Q Consensus 113 ~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~-----~P~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 184 (496)
.++.+.....+........+.......+.+..|+..++. +|. +...|......-...|+
T Consensus 246 ~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~------------- 312 (577)
T KOG1258|consen 246 SLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGD------------- 312 (577)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhccc-------------
Confidence 334444444455544444444445566667777777653 233 34556666666677787
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Q 010976 185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELS 263 (496)
Q Consensus 185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g 263 (496)
++...-.|++++--+..+...|.+.+.-+.. .|+.+-|. ..+.++.+.. |..+..+...+..-...|
T Consensus 313 -~~~~~~l~ercli~cA~Y~efWiky~~~m~~----~~~~~~~~-------~~~~~~~~i~~k~~~~i~L~~a~f~e~~~ 380 (577)
T KOG1258|consen 313 -FSRVFILFERCLIPCALYDEFWIKYARWMES----SGDVSLAN-------NVLARACKIHVKKTPIIHLLEARFEESNG 380 (577)
T ss_pred -HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH----cCchhHHH-------HHHHhhhhhcCCCCcHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999988 89988888 5566665554 677888888888888888
Q ss_pred CcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010976 264 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 309 (496)
Q Consensus 264 ~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~ 309 (496)
++ ..|...|++..+--|+...+-.........+|+.
T Consensus 381 n~----------~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 381 NF----------DDAKVILQRIESEYPGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred cH----------HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence 88 9999999999988899888777767777777753
No 358
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.92 E-value=3.4 Score=31.88 Aligned_cols=40 Identities=23% Similarity=0.105 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010976 187 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 245 (496)
Q Consensus 187 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~ 245 (496)
..|+++..+|++.| . .|++.+|+.+|.+|++.|..++...
T Consensus 4 ~~Ai~~a~~Ave~D---------------~----~g~y~eA~~~Y~~aie~l~~~~~~~ 43 (76)
T cd02681 4 RDAVQFARLAVQRD---------------Q----EGRYSEAVFYYKEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHHHHHHHH---------------H----ccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777777654 3 9999999999999999999987555
No 359
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.83 E-value=0.72 Score=39.12 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=51.0
Q ss_pred hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecC---ceeecccccCCCCCCCCeeeEeecCCc
Q 010976 381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVP---DIVSVSACADLTLPPGAGLCIETIHGP 457 (496)
Q Consensus 381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (496)
...|.++||+|.+..|-.+..+.... ..|...- +....|... ++...+..-+. -+..++|+|.|..=.
T Consensus 30 ~~~w~kRWFvlr~s~L~Y~~~~~~~~-------~~~vil~-D~~f~v~~~~~~~~~~~~~~~~~-~~~~~~~~i~t~~R~ 100 (121)
T cd01254 30 CDRWQKRWFIVKESFLAYMDDPSSAQ-------ILDVILF-DVDFKVNGGGKEDISLAVELKDI-TGLRHGLKITNSNRS 100 (121)
T ss_pred ccCCcceeEEEeCCEEEEEcCCCCCc-------eeeEEEE-cCCccEEeCCccccccccccccc-CCCceEEEEEcCCcE
Confidence 34799999999988887766555411 0000000 000000000 00000111111 356789999877666
Q ss_pred eeeeecChhhhhhHHHHHHH
Q 010976 458 VFLVADSWEALDGWLDAIRL 477 (496)
Q Consensus 458 ~~~~~~~~~~~~~~~~a~~~ 477 (496)
..|.|+|.+.+.+|.++|..
T Consensus 101 ~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 101 LKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred EEEEeCCHHHHHHHHHHHHh
Confidence 79999999999999999974
No 360
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.81 E-value=4.8 Score=43.15 Aligned_cols=82 Identities=9% Similarity=-0.015 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010976 185 LLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 258 (496)
Q Consensus 185 ~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 258 (496)
+|..+++.|...+..-|++ +....++..||.. +.+.+.|. ++|++|=+.+|.++-....+-.+
T Consensus 369 ~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~----L~QLD~A~-------E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 369 KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK----LEQLDNAV-------EVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh----HHHHHHHH-------HHHHHHHhhccccHHHHHHHHHH
Confidence 3999999999999987764 4567889999988 77777777 89999999999999999988888
Q ss_pred HHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976 259 LQELSAIVPAREKQTIVRTAISKFRAAIQ 287 (496)
Q Consensus 259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~ 287 (496)
....|.. .+|+.+......
T Consensus 438 ~~~E~~S----------e~AL~~~~~~~s 456 (872)
T KOG4814|consen 438 FLAEDKS----------EEALTCLQKIKS 456 (872)
T ss_pred HHHhcch----------HHHHHHHHHHHh
Confidence 8888998 666666555544
No 361
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=88.69 E-value=1 Score=33.83 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976 221 RGRTKEAEELWKQATKNYEKAVQLNWN 247 (496)
Q Consensus 221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~ 247 (496)
.|++++|+.+|.+|+..+..++...++
T Consensus 18 ~g~~~~A~~~Y~~ai~~l~~~~~~~~~ 44 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYLMQALKSESN 44 (69)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999998864
No 362
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=88.64 E-value=4.2 Score=47.08 Aligned_cols=123 Identities=17% Similarity=0.048 Sum_probs=91.4
Q ss_pred HHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 010976 139 TFAAKRYANA-IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYN 209 (496)
Q Consensus 139 ~~Ai~~~~~a-l~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~P~~~~a~~~ 209 (496)
.+++..+... -.+.|+....+..++.++..+++ .++|+..-.++.-+ .|+....|.+
T Consensus 955 ~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d--------------~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGD--------------NQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcc--------------hHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3344466533 34578889999999999999999 99999888877655 4567778889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976 210 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 210 lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l 288 (496)
++...+. .++...|+..+..|.....-.. +..|.-.....|++.++...+++ +.|+.+.+.|+++
T Consensus 1021 lal~~f~----~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~----------d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1021 LALYEFA----VKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA----------DTALRYLESALAK 1086 (1236)
T ss_pred HHHHHHh----ccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH----------HHHHHHHHHHHHH
Confidence 9988888 8888888855444433222111 23466667778999999999999 9999999999986
Q ss_pred c
Q 010976 289 Q 289 (496)
Q Consensus 289 ~ 289 (496)
+
T Consensus 1087 ~ 1087 (1236)
T KOG1839|consen 1087 N 1087 (1236)
T ss_pred H
Confidence 4
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.30 E-value=33 Score=38.48 Aligned_cols=150 Identities=13% Similarity=0.039 Sum_probs=97.0
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----
Q 010976 132 RSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---- 202 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~---- 202 (496)
....|++++|+++.+.++..-|.+ ..++..+|.+..-.|+ +++|..+.+.+.++.-.
T Consensus 468 al~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~--------------~~~Al~~~~~a~~~a~~~~~~ 533 (894)
T COG2909 468 ALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGE--------------LTQALALMQQAEQMARQHDVY 533 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhch--------------HHHHHHHHHHHHHHHHHcccH
Confidence 345699999999999999988865 4567788889999999 99999999999888332
Q ss_pred CHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHH
Q 010976 203 LHDA--FYNWAIAISDRAKMRGRTKEAEELWKQAT-KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 279 (496)
Q Consensus 203 ~~~a--~~~lg~~~~~~~~~~g~~~eA~~~~~~A~-~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai 279 (496)
+..+ .+..+.++.. +|+...+.. .++. ..+.+-+...|-+.......+.+++..-++ +.+.
T Consensus 534 ~l~~~~~~~~s~il~~----qGq~~~a~~--~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~----------~~~~ 597 (894)
T COG2909 534 HLALWSLLQQSEILEA----QGQVARAEQ--EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRL----------DLAE 597 (894)
T ss_pred HHHHHHHHHHHHHHHH----hhHHHHHHH--HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH----------hhhh
Confidence 2222 3344566666 783333331 1111 122333444455555656666666655556 7777
Q ss_pred HHHHHHHHhc----CC--CH-HHHHHHHHHHHHcchhHH
Q 010976 280 SKFRAAIQLQ----FD--FH-RAIYNLGTVLYGLAEDTL 311 (496)
Q Consensus 280 ~~~~~Al~l~----P~--~~-~a~~~lg~~~~~~g~~~~ 311 (496)
...++.+++. |. .. -++++|+.+++..|+.+.
T Consensus 598 ~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 598 AEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred HHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH
Confidence 7777776652 22 22 234588999999998433
No 364
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.12 E-value=1.2 Score=29.40 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 010976 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 242 (496)
Q Consensus 205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al 242 (496)
++|..||.+-.. .++|++|++.|++|+...++.+
T Consensus 2 dv~~~Lgeisle----~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 2 DVYDLLGEISLE----NENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred cHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHhc
Confidence 467888988888 9999999987777777766543
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.09 E-value=12 Score=35.07 Aligned_cols=176 Identities=19% Similarity=0.217 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH----HHHHH
Q 010976 276 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS----VYSSA 351 (496)
Q Consensus 276 ~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~----~y~~a 351 (496)
.+|+...+.-++-+|.+......|-.+|.-.|+ |.+|..-++-+.++.|.+. .|+..
T Consensus 18 ~dai~~a~~qVkakPtda~~RhflfqLlcvaGd-------------------w~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 18 QDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGD-------------------WEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred HHHHHHHHHHHhcCCccccchhHHHHHHhhcch-------------------HHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 999999999999999999998888899999998 8888888888899999877 45554
Q ss_pred HHhhhcCCchhhhhhccccCCCCCCCCCChhhhhhh---ccccchhhhh------------hhcccccc----ccc--cc
Q 010976 352 LRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRS---QFVLNHEGLQ------------QASKNEQK----QVT--RS 410 (496)
Q Consensus 352 l~~~~~~~p~~~l~~g~l~~~~~~~~~~~~~~~~~~---~~~l~~~~l~------------~~~~~~~~----~~~--~~ 410 (496)
++.- ..-+.-+.....+.....+...|... .+.+.+++-. +...+-+. +.. .+
T Consensus 79 ir~e------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~~~gg~fawiaD 152 (273)
T COG4455 79 IRCE------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGHADGGSFAWIAD 152 (273)
T ss_pred HHHH------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcccCCcchhhhhh
Confidence 4321 01111112233345555566677532 2233333211 11111110 000 11
Q ss_pred cCCCCCC---CCCCCceeeeecCceeeccccc--CC-CCC-CCCeeeEeecCCc---eeeeecChhhhhhHHHHHHHHH
Q 010976 411 LSGRTGD---FSPDRRAIRIEVPDIVSVSACA--DL-TLP-PGAGLCIETIHGP---VFLVADSWEALDGWLDAIRLVY 479 (496)
Q Consensus 411 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~ 479 (496)
.-.|.|+ +....++++||...|.|++.-. ++ -|- .+.-+++. +|. +||-++=-.+-+. .|++||-+
T Consensus 153 sD~RlgpvlEvitnG~Y~Wipfs~IrSL~v~~psrlrDL~w~paeltl~--dg~~~~a~LparY~gt~e~-ddalrLgr 228 (273)
T COG4455 153 SDDRLGPVLEVITNGRYLWIPFSRIRSLSVDPPSRLRDLAWRPAELTLR--DGAIASALLPARYHGTGED-DDALRLGR 228 (273)
T ss_pred cccccCcceEEEeCCEEEEEehhhccccccCCCCChHHhhcccceEEEe--cCceeEEEeeeecCCCccc-hHHHHhcc
Confidence 1123333 3344589999999999877322 21 111 33334443 332 4888876666665 67777744
No 366
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.76 E-value=1.9 Score=28.02 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHH--HHHHHHhCCCC
Q 010976 156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK--YDEATRLCPTL 203 (496)
Q Consensus 156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~--~~~Al~l~P~~ 203 (496)
++.++.+|..+..+|+ +++|+.. |.-+..+++.|
T Consensus 1 ~e~~y~~a~~~y~~~k--------------y~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGK--------------YDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHhcccC
Confidence 3568899999999999 9999999 55888888764
No 367
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=87.75 E-value=4.1 Score=31.25 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 248 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~ 248 (496)
+++|+....+|++. -. .|++++|+.+|.+|++.|.+++...|+.
T Consensus 5 ~~~A~~li~~Av~~---------------d~----~g~~~eAl~~Y~~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 5 LSKAKELISKALKA---------------DE----AGDYEEALELYKKAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHHHHHH---------------HH----cCCHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 66677766666543 33 8999999999999999999999988753
No 368
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.35 E-value=1.1 Score=36.80 Aligned_cols=80 Identities=14% Similarity=0.234 Sum_probs=46.9
Q ss_pred hhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCC-CCCeeeEeecC----C
Q 010976 382 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIH----G 456 (496)
Q Consensus 382 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~ 456 (496)
..|.++||++-...|-.+-..+.. .+...+.+.+.. .+...|.+|. ..+.|.+.+.. .
T Consensus 18 K~~KrrwF~lk~~~L~YyK~kee~--------------~~~p~i~lnl~g---cev~~dv~~~~~kf~I~l~~ps~~~~r 80 (106)
T cd01237 18 KGYKQYWFTFRDTSISYYKSKEDS--------------NGAPIGQLNLKG---CEVTPDVNVAQQKFHIKLLIPTAEGMN 80 (106)
T ss_pred hhheeEEEEEeCCEEEEEccchhc--------------CCCCeEEEecCc---eEEcccccccccceEEEEecCCccCCe
Confidence 369999999975555443222210 012233444431 1222333343 34666665433 2
Q ss_pred ceeeeecChhhhhhHHHHHHHH
Q 010976 457 PVFLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 457 ~~~~~~~~~~~~~~~~~a~~~~ 478 (496)
.+||.++|.+..+.|..|.||+
T Consensus 81 ~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 81 EVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred EEEEECCCHHHHHHHHHHHHHh
Confidence 4699999999999999999985
No 369
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=87.34 E-value=0.75 Score=38.43 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=23.6
Q ss_pred CCCeeeEeecCCceeeeecChhhhhhHHHHHH
Q 010976 445 PGAGLCIETIHGPVFLVADSWEALDGWLDAIR 476 (496)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 476 (496)
....+-+.|...-.+|.+++.++..+|.+||.
T Consensus 79 ~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~ 110 (112)
T PF15413_consen 79 HLKVFSIFTPTKTFHLRCETREDRYDWIEALQ 110 (112)
T ss_dssp SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHH
T ss_pred CCCCcEEECCCcEEEEEECCHHHHHHHHHHHH
Confidence 33445556566666999999999999999996
No 370
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=87.14 E-value=34 Score=34.08 Aligned_cols=193 Identities=19% Similarity=0.092 Sum_probs=102.8
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC------------
Q 010976 134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP------------ 201 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P------------ 201 (496)
+..+..+-|+.-.+|+++||+.+.+|..|+.--.. - ..+|.+.+++|++.-.
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--T--------------i~~AE~l~k~ALka~e~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEEAT--T--------------IVDAERLFKQALKAGETIYRQSQQCQHQ 259 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--h--------------HHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 34566778888899999999999998887653322 1 5556666666655410
Q ss_pred -----------CCHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCcc
Q 010976 202 -----------TLHDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIV 266 (496)
Q Consensus 202 -----------~~~~a~--~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~ 266 (496)
.+...| ..|+.|-.+ +|+..+|+ +.++...+-.|- -...+-||-.++.++.-|
T Consensus 260 ~~~~da~~rRDtnvl~YIKRRLAMCARk----lGrlrEA~-------K~~RDL~ke~pl~t~lniheNLiEalLE~QAY- 327 (556)
T KOG3807|consen 260 SPQHEAQLRRDTNVLVYIKRRLAMCARK----LGRLREAV-------KIMRDLMKEFPLLTMLNIHENLLEALLELQAY- 327 (556)
T ss_pred ccchhhhhhcccchhhHHHHHHHHHHHH----hhhHHHHH-------HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-
Confidence 111122 356666666 99999999 566655555452 123455666666666555
Q ss_pred hHHHhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcH
Q 010976 267 PAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY 345 (496)
Q Consensus 267 ~A~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 345 (496)
.+-...+-+-=.+ -|..+.+.|.-+.+-.+.-.+... ........++.+ -..|.+.+.+|.+.+|..
T Consensus 328 ---------ADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFs-pd~asrRGLS~A--E~~AvEAihRAvEFNPHV 395 (556)
T KOG3807|consen 328 ---------ADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFS-PETASRRGLSTA--EINAVEAIHRAVEFNPHV 395 (556)
T ss_pred ---------HHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcC-chhhhhccccHH--HHHHHHHHHHHhhcCCCC
Confidence 2222221111111 255555555433322111100000 000000111222 356888899999999999
Q ss_pred HHHHHHHHhhhcCC-chhhhhhcc
Q 010976 346 SVYSSALRLVRSML-PLPYLKAGY 368 (496)
Q Consensus 346 ~~y~~al~~~~~~~-p~~~l~~g~ 368 (496)
+.|.--++ .-.+ |...+++|.
T Consensus 396 PkYLLE~k--slIlPPEHiLKRGD 417 (556)
T KOG3807|consen 396 PKYLLEMK--SLILPPEHILKRGD 417 (556)
T ss_pred cHHHHHHH--hccCCHHHHhhccc
Confidence 97753332 2233 344555554
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.91 E-value=4.4 Score=32.47 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010976 186 LEEACKKYDEATRLCPT---------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 240 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~---------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~ 240 (496)
|.+|++.+.+.+..... ...+..++|.++.. .|++++|+..+++|+...++
T Consensus 14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~----~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR----FGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHH
Confidence 99998888888877322 24567888998988 99999999777776666554
No 372
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=86.32 E-value=2.1 Score=32.93 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 247 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~ 247 (496)
+++|+....+|+..+ . .|++++|+.+|.+|++.|..++...++
T Consensus 3 l~~Ai~lv~~Av~~D---------------~----~g~y~eA~~lY~~ale~~~~~~k~e~~ 45 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------Q----RGDAAAALSLYCSALQYFVPALHYETD 45 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----hccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 567788888776554 3 899999999999999999999988754
No 373
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.36 E-value=9.6 Score=39.00 Aligned_cols=79 Identities=13% Similarity=0.036 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCC--------CCH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976 186 LEEACKKYDEATRLCP--------TLH----------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 247 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P--------~~~----------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~ 247 (496)
|..|+.-|..||+++. ..+ .+--.|..||.. +++.+-|+ ..-.+.|.+||.
T Consensus 192 ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~----~rkpdlAL-------nh~hrsI~lnP~ 260 (569)
T PF15015_consen 192 YAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR----MRKPDLAL-------NHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh----cCCCchHH-------HHHhhhhhcCcc
Confidence 7777777777776632 211 134578889999 99999999 888999999999
Q ss_pred CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976 248 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 285 (496)
Q Consensus 248 ~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A 285 (496)
+..-+...+.++..+.+| .+|-..+--|
T Consensus 261 ~frnHLrqAavfR~LeRy----------~eAarSamia 288 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERY----------SEAARSAMIA 288 (569)
T ss_pred hhhHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 999999999999999999 6666554443
No 374
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.29 E-value=14 Score=33.54 Aligned_cols=86 Identities=21% Similarity=0.055 Sum_probs=60.4
Q ss_pred hhhhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC--CCC
Q 010976 129 EEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--PTL 203 (496)
Q Consensus 129 ~~~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~--P~~ 203 (496)
+.-+.+.|+++.|++.|.++....... .+.+.++-.+....++ +.....+..++-.+- +.+
T Consensus 43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d--------------~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD--------------WSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHhccch
Confidence 334677899999999999988766432 5677788888888999 999999999887763 233
Q ss_pred HHHHH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 010976 204 HDAFY----NWAIAISDRAKMRGRTKEAEELWK 232 (496)
Q Consensus 204 ~~a~~----~lg~~~~~~~~~~g~~~eA~~~~~ 232 (496)
....+ .-|..+.. .++|.+|.+.|-
T Consensus 109 ~~~~nrlk~~~gL~~l~----~r~f~~AA~~fl 137 (177)
T PF10602_consen 109 WERRNRLKVYEGLANLA----QRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHHHHHHHHH----hchHHHHHHHHH
Confidence 33322 23344444 788888874443
No 375
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.28 E-value=33 Score=36.66 Aligned_cols=112 Identities=14% Similarity=0.116 Sum_probs=67.5
Q ss_pred ccHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh----
Q 010976 136 RILTFAAKRYANAIER------------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---- 199 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---- 199 (496)
..|++|...|.-+... +|-+.+.+..++.++..+|+ .....+..+.++-.+++|+.-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD-------~e~aadLieR~Ly~~d~a~hp~F~~ 324 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGD-------REMAADLIERGLYVFDRALHPNFIP 324 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHHHHhcccccc
Confidence 5788899888888765 36778999999999999999 111223344445555555432
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Q 010976 200 ----------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQEL 262 (496)
Q Consensus 200 ----------~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~ 262 (496)
.|.|-..|..+ +. .-+.-+-..||+.|.+.++-.+.++|. +|-+...+-..|.-.
T Consensus 325 ~sg~cRL~y~~~eNR~FyL~l----~r----~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 325 FSGNCRLPYIYPENRQFYLAL----FR----YMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred ccccccCcccchhhHHHHHHH----HH----HHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 12221111111 11 111122245566666999999999998 877666555555433
No 376
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=85.11 E-value=8 Score=29.72 Aligned_cols=43 Identities=23% Similarity=0.186 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 247 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~ 247 (496)
+.+|+..+.+|++.+ . .|++++|..+|.+|++.|..+++..++
T Consensus 3 l~~A~~l~~~Ave~d---------------~----~~~y~eA~~~Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 3 LEQAAELIRLALEKE---------------E----EGDYEAAFEFYRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----HhhHHHHHHHHHHHHHHHHHHhccCCC
Confidence 567777777776654 3 799999999999999999999988765
No 377
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=85.05 E-value=1.2 Score=34.85 Aligned_cols=80 Identities=25% Similarity=0.354 Sum_probs=51.7
Q ss_pred hhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeec---CCc
Q 010976 381 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETI---HGP 457 (496)
Q Consensus 381 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 457 (496)
...|.++++.|....+.-+....... .....+++..+. +....+.. -..+.|.+.+. ...
T Consensus 16 ~~~w~~~~~~l~~~~l~~~~~~~~~~---------------~~~~~~~l~~~~-v~~~~~~~-~~~~~F~i~~~~~~~~~ 78 (99)
T cd00900 16 GKRWKRRWFFLFDDGLLLYKSDDKKE---------------IKPGSIPLSEIS-VEEDPDGS-DDPNCFAIVTKDRGRRV 78 (99)
T ss_pred ccCceeeEEEEECCEEEEEEcCCCCc---------------CCCCEEEccceE-EEECCCCC-CCCceEEEECCCCCcEE
Confidence 35799999999766655543332211 000356666666 54443322 24577888777 345
Q ss_pred eeeeecChhhhhhHHHHHHH
Q 010976 458 VFLVADSWEALDGWLDAIRL 477 (496)
Q Consensus 458 ~~~~~~~~~~~~~~~~a~~~ 477 (496)
++|.+.|.+++..|.+||+.
T Consensus 79 ~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 79 FVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred EEEEcCCHHHHHHHHHHHhc
Confidence 69999999999999999974
No 378
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.01 E-value=1.6 Score=28.71 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 200 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 200 (496)
+++..||.+-...++ |++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~--------------f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENEN--------------FEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHH
Confidence 567889999999999 999999999999873
No 379
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.84 E-value=43 Score=33.50 Aligned_cols=158 Identities=18% Similarity=0.090 Sum_probs=86.4
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---CCCCCC---------CcchhhhHHHHHHHHHHHHHhC-
Q 010976 134 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN---VSLDST---------SPSKDALLEEACKKYDEATRLC- 200 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~---~~~~~~---------~~~~~~~~~~A~~~~~~Al~l~- 200 (496)
+.+--++||..-.-.+.+.|..++++-.++.++++..+. ...++. +.-.-+..+++...+.+|+...
T Consensus 208 ra~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~ 287 (415)
T COG4941 208 RADLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRR 287 (415)
T ss_pred cchHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 345678899999999999999999999999988877663 222222 1112355788888899988873
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHH
Q 010976 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 280 (496)
Q Consensus 201 P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~ 280 (496)
|.-....-.++.++... ...++ ..|..-..+|+....+.| ++..-.|.+.++.+.--. ..++.
T Consensus 288 pGPYqlqAAIaa~HA~a-~~aed-----tDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp----------~agLa 350 (415)
T COG4941 288 PGPYQLQAAIAALHARA-RRAED-----TDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGP----------AAGLA 350 (415)
T ss_pred CChHHHHHHHHHHHHhh-cccCC-----CChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhH----------HhHHH
Confidence 44434444444444330 00111 122222255555555555 334444444444444333 44444
Q ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHcch
Q 010976 281 KFRAAIQL--QFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 281 ~~~~Al~l--~P~~~~a~~~lg~~~~~~g~ 308 (496)
..+....- -.++.-.+...|..+.++|+
T Consensus 351 ~ve~L~~~~~L~gy~~~h~~RadlL~rLgr 380 (415)
T COG4941 351 MVEALLARPRLDGYHLYHAARADLLARLGR 380 (415)
T ss_pred HHHHhhcccccccccccHHHHHHHHHHhCC
Confidence 44333322 11233344445555666665
No 380
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.77 E-value=33 Score=31.77 Aligned_cols=51 Identities=10% Similarity=0.090 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcch
Q 010976 247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD----FHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 247 ~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~----~~~a~~~lg~~~~~~g~ 308 (496)
+.++..+.||..|.+... ++++..|.++|++... +++++..|+.+++.+++
T Consensus 139 ~t~elq~aLAtyY~krD~-----------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 139 ETAELQYALATYYTKRDP-----------EKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred CCHHHHHHHHHHHHccCH-----------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 478888888888875544 8999999999988543 58889999999999887
No 381
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.72 E-value=1 Score=26.71 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHH
Q 010976 250 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 284 (496)
Q Consensus 250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~ 284 (496)
.+++++|.++...|++ ++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~----------~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDP----------DEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCH----------HHHHHHHhC
Confidence 5788999999999999 999888763
No 382
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=84.17 E-value=1.2 Score=44.25 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=85.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHh-------------cCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976 221 RGRTKEAEELWKQATKNYEKAVQ-------------LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 287 (496)
Q Consensus 221 ~g~~~eA~~~~~~A~~~~~~Al~-------------l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~ 287 (496)
.+++..|...|.++..++.. +. +...-...+.|++.+-...+.+ ..|+..-..+++
T Consensus 235 k~~~~~a~~k~~k~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~----------~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 235 KQRYREALAKYRKALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGR----------GGARFRTNEALR 303 (372)
T ss_pred hccHhHHHHHHHHHhhhhcc-cccccccccccccccccccccccccchHHhcccccCC----------Ccceeccccccc
Confidence 77777887777777666663 11 1122234566788888888888 888888888888
Q ss_pred hcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhhcCC
Q 010976 288 LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSML 359 (496)
Q Consensus 288 l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~y~~al~~~~~~~ 359 (496)
.++....+++..+..+..+.+ +..+...++.+....|++......+..++...
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~-------------------~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKN-------------------YDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhc-------------------hhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 999999999999999999998 88899999999999999998888877666544
No 383
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=83.96 E-value=4.8 Score=30.73 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976 221 RGRTKEAEELWKQATKNYEKAVQLNWN 247 (496)
Q Consensus 221 ~g~~~eA~~~~~~A~~~~~~Al~l~P~ 247 (496)
.|++++|+.+|.+|++.|..++...|+
T Consensus 19 ~g~~~~Al~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 19 DGNYEEALELYKEALDYLLQALKAEKE 45 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 899999999999999999999988876
No 384
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=83.84 E-value=1 Score=47.80 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=39.8
Q ss_pred eeeecCceeecccccCCCCC-CCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHH
Q 010976 425 IRIEVPDIVSVSACADLTLP-PGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVY 479 (496)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~ 479 (496)
-.+.+.++.+|.|...+..| ..+.|.+-|..|. +|++++|.++++.|..+|+-+.
T Consensus 420 ~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 420 KSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred ccccHHHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 34446677777777443444 5566666665665 5999999999999999998764
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.61 E-value=3.3 Score=26.86 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHccCcchHHHhhhhHHHHHHH--HHHHHHhcCCC
Q 010976 250 QALNNWGLALQELSAIVPAREKQTIVRTAISK--FRAAIQLQFDF 292 (496)
Q Consensus 250 ~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~--~~~Al~l~P~~ 292 (496)
+.++.+|..+...|++ ++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky----------~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKY----------DEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHhcccC
Confidence 5678899999999999 999999 55888888764
No 386
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.45 E-value=76 Score=34.87 Aligned_cols=127 Identities=15% Similarity=0.081 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHH-HhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCC--CCHH---
Q 010976 136 RILTFAAKRYANAIERN-P---EDYDALYNWALVLQ-ESADNVSLDSTSPSKDALLEEACKKYDEATRLCP--TLHD--- 205 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~-P---~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P--~~~~--- 205 (496)
+-...||.+++.+++.. + ..+.+++.+|.+|+ ...+ ++.|..++++++.+.. +..+
T Consensus 35 kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n--------------~~~Ae~~L~k~~~l~~~~~~~d~k~ 100 (608)
T PF10345_consen 35 KLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETEN--------------LDLAETYLEKAILLCERHRLTDLKF 100 (608)
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhccccchHHHHH
Confidence 45567899999888522 2 13567888999998 4555 9999999999999874 4333
Q ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHH--HHHHHccCcchHHHhhhhHHHHHHH
Q 010976 206 -AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWG--LALQELSAIVPAREKQTIVRTAISK 281 (496)
Q Consensus 206 -a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~-~~~a~~~lg--~~l~~~g~~~~A~~~~~~~~~Ai~~ 281 (496)
+.+.++.++.+ .+... |....+++++.++. .+. .....+.+- ..+...+++ ..|+..
T Consensus 101 ~~~~ll~~i~~~----~~~~~-a~~~l~~~I~~~~~----~~~~~w~~~frll~~~l~~~~~d~----------~~Al~~ 161 (608)
T PF10345_consen 101 RCQFLLARIYFK----TNPKA-ALKNLDKAIEDSET----YGHSAWYYAFRLLKIQLALQHKDY----------NAALEN 161 (608)
T ss_pred HHHHHHHHHHHh----cCHHH-HHHHHHHHHHHHhc----cCchhHHHHHHHHHHHHHHhcccH----------HHHHHH
Confidence 34455555655 77666 88766766666665 122 222222322 122222576 899999
Q ss_pred HHHHHHhc--CCCHHH
Q 010976 282 FRAAIQLQ--FDFHRA 295 (496)
Q Consensus 282 ~~~Al~l~--P~~~~a 295 (496)
++....+. ..++.+
T Consensus 162 L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 162 LQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHhhhcCCHHH
Confidence 99988875 354433
No 387
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.16 E-value=2.2 Score=35.91 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=32.4
Q ss_pred CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHHHHH
Q 010976 445 PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVYTIY 482 (496)
Q Consensus 445 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~ 482 (496)
+-++|+|.|.+|.. .|-|.|.+++..|+++|..+...+
T Consensus 76 r~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~ 114 (117)
T cd01230 76 KPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAAF 114 (117)
T ss_pred CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 77899999988776 666889999999999999987654
No 388
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=83.05 E-value=15 Score=35.79 Aligned_cols=78 Identities=15% Similarity=0.002 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976 188 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKM-----------RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 256 (496)
Q Consensus 188 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~-----------~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 256 (496)
.-...++.-++.+|++..++..+|..+...+.. ..++..+..+.++|+..+.+|+.++|....++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 456677888888999999999999998875321 123455667789999999999999999999999998
Q ss_pred HHHHHccCc
Q 010976 257 LALQELSAI 265 (496)
Q Consensus 257 ~~l~~~g~~ 265 (496)
.+-...|..
T Consensus 141 ~~s~~fgeP 149 (277)
T PF13226_consen 141 NISAYFGEP 149 (277)
T ss_pred HHHhhcCCc
Confidence 888888886
No 389
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.81 E-value=7.7 Score=37.91 Aligned_cols=64 Identities=19% Similarity=0.119 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHH
Q 010976 204 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR 283 (496)
Q Consensus 204 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~ 283 (496)
..++..++..+.. .|+++.++ ..+++.+.++|.+-.+|..+-.+|...|+. ..|+..|+
T Consensus 153 ~~~l~~lae~~~~----~~~~~~~~-------~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~----------~~ai~~y~ 211 (280)
T COG3629 153 IKALTKLAEALIA----CGRADAVI-------EHLERLIELDPYDEPAYLRLMEAYLVNGRQ----------SAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHHh----cccHHHHH-------HHHHHHHhcCccchHHHHHHHHHHHHcCCc----------hHHHHHHH
Confidence 4566777777777 88888888 899999999999999999999999999999 99999999
Q ss_pred HHHHh
Q 010976 284 AAIQL 288 (496)
Q Consensus 284 ~Al~l 288 (496)
+.-+.
T Consensus 212 ~l~~~ 216 (280)
T COG3629 212 QLKKT 216 (280)
T ss_pred HHHHH
Confidence 87653
No 390
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.62 E-value=1.6 Score=25.82 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHH
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 195 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 195 (496)
.+.+++|.++..+|+ +++|...+++
T Consensus 2 ~a~~~la~~~~~~G~--------------~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGD--------------PDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHhC
Confidence 568899999999999 9999988763
No 391
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=82.54 E-value=7.9 Score=30.09 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976 185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 246 (496)
Q Consensus 185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P 246 (496)
.|+.|.++.++||..+ . .|+.++|+.+|++++..+.+++.+.-
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E----~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------E----WGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------h----cCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4777887777777654 3 89999999999999999999998864
No 392
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=82.32 E-value=2.3 Score=35.88 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=46.9
Q ss_pred ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCcee
Q 010976 380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVF 459 (496)
Q Consensus 380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (496)
....|..++.+|....|.-.....+......... ........-..|.|..- -++...|-+- +-++|++.|.+|..|
T Consensus 22 ~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~--~~~~~~~p~~~i~L~~a-~a~~a~dY~K-r~~VFrL~~~dg~e~ 97 (119)
T PF15410_consen 22 SKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDI--QSVENAKPDSSISLHHA-LAEIASDYTK-RKNVFRLRTADGSEY 97 (119)
T ss_dssp S---EEEEEEEEETTEEEEESSHHHHCCT-BS-----SS--E-----EE-TT--EEEEETTBTT-CSSEEEEE-TTS-EE
T ss_pred CCCCccEEeEEEECCEEEEEccCcccccCCcccc--cccccCcceeEEEecce-EEEeCccccc-CCeEEEEEeCCCCEE
Confidence 4558998888886554443222111110000000 00000111234555532 2333555554 899999999999985
Q ss_pred e-eecChhhhhhHHHHHHHH
Q 010976 460 L-VADSWEALDGWLDAIRLV 478 (496)
Q Consensus 460 ~-~~~~~~~~~~~~~a~~~~ 478 (496)
| -|.|.+++..|+++|-.+
T Consensus 98 Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 98 LFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp EEE-SSHHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHhhh
Confidence 5 567999999999999765
No 393
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=82.24 E-value=21 Score=40.97 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=79.3
Q ss_pred hhhHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHH
Q 010976 130 EGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA 206 (496)
Q Consensus 130 ~~~~~~g~~~~Ai~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a 206 (496)
.+....+.|+.|+..|++.-.-.|.- .++.+..|..+..+.. .......+.+|+..|++.-. .|.-+--
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 554 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKAS-------EQGDPRDFTQALSEFSYLHG-GVGAPLE 554 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHH-------hcCChHHHHHHHHHHHHhcC-CCCCchH
Confidence 34556689999999999999988865 5788899998887665 11112458888888887642 3445555
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976 207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 256 (496)
Q Consensus 207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg 256 (496)
|..-+.+|.. +|+++|-+ ++|.-|++..|++|..-...-
T Consensus 555 ~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 593 (932)
T PRK13184 555 YLGKALVYQR----LGEYNEEI-------KSLLLALKRYSQHPEISRLRD 593 (932)
T ss_pred HHhHHHHHHH----hhhHHHHH-------HHHHHHHHhcCCCCccHHHHH
Confidence 6777777888 99999999 788888888888876544333
No 394
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=81.36 E-value=73 Score=33.25 Aligned_cols=65 Identities=20% Similarity=0.130 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH----H
Q 010976 272 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS----V 347 (496)
Q Consensus 272 ~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~----~ 347 (496)
+|++.++.-+-.-..++.| .+.++..+|.+++...+ |.+|..|+. .+-|+.. .
T Consensus 475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~-------------------Y~eA~~~l~---~LP~n~~~~dsk 531 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR-------------------YQEAWEYLQ---KLPPNERMRDSK 531 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh-------------------HHHHHHHHH---hCCCchhhHHHH
Confidence 3444999999899999999 89999999999999998 888888864 4555544 3
Q ss_pred HHHHHHhhhcCC
Q 010976 348 YSSALRLVRSML 359 (496)
Q Consensus 348 y~~al~~~~~~~ 359 (496)
..+++.+.++.+
T Consensus 532 vqKAl~lCqKh~ 543 (549)
T PF07079_consen 532 VQKALALCQKHL 543 (549)
T ss_pred HHHHHHHHHHhh
Confidence 456666665554
No 395
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=80.46 E-value=14 Score=33.59 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=95.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976 136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 215 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~ 215 (496)
.+|++|...|..-..-+ .++..-+.+|..++. |+ ....+.+..|++.|..+-. -+.+.+-.++|.++.
T Consensus 49 knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~-GK--------gG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~ 116 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLA-GK--------GGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHW 116 (248)
T ss_pred HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhc-cc--------CCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhc
Confidence 45556665555543333 356667777765543 32 0223349999999998876 567888888888887
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc-c-----hH--------HHhhhhHHHHHHH
Q 010976 216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI-V-----PA--------REKQTIVRTAISK 281 (496)
Q Consensus 216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-~-----~A--------~~~~~~~~~Ai~~ 281 (496)
. -....++--...+|.+++.++-.+ ++..+-++|...|..-.+- . ++ ..-..+.+.|.++
T Consensus 117 ~----g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qf 190 (248)
T KOG4014|consen 117 N----GEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQF 190 (248)
T ss_pred c----CcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHH
Confidence 6 444444444455666899988766 5778888888777644111 0 00 1124667788887
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 282 FRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 282 ~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
--+|-++ +++.+..|+...| .+|+
T Consensus 191 a~kACel--~~~~aCAN~SrMy-klGD 214 (248)
T KOG4014|consen 191 AIKACEL--DIPQACANVSRMY-KLGD 214 (248)
T ss_pred HHHHHhc--CChHHHhhHHHHH-HccC
Confidence 7777666 4677777777654 4553
No 396
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.51 E-value=34 Score=33.14 Aligned_cols=59 Identities=22% Similarity=0.134 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010976 185 LLEEACKKYDEATRLCPTLH----DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 247 (496)
Q Consensus 185 ~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~ 247 (496)
.+++|+..|++++++.+... .++..+-.+++. +|++++-.+.|.+-+.+.+.|+..|-.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~----l~~~~eMm~~Y~qlLTYIkSAVTrNyS 104 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR----LGNYKEMMERYKQLLTYIKSAVTRNYS 104 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 49999999999999998754 467777778888 999999999999999999999877643
No 397
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.84 E-value=9.5 Score=35.23 Aligned_cols=72 Identities=15% Similarity=0.042 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHH
Q 010976 138 LTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAI 212 (496)
Q Consensus 138 ~~~Ai~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~~~a~~~lg~ 212 (496)
-+.|...|-++-... -++++..+.+|..|.+ .+ .++++..|.+++++.+. +++.+..|+.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-rD--------------~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas 186 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYTK-RD--------------PEKTIQLLLRALELSNPDDNFNPEILKSLAS 186 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-cC--------------HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 356666666543221 2578999999998884 45 99999999999999544 6899999999
Q ss_pred HHHHHHHHcCCHHHHH
Q 010976 213 AISDRAKMRGRTKEAE 228 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~ 228 (496)
++.. +|+++.|-
T Consensus 187 ~~~~----~~~~e~AY 198 (203)
T PF11207_consen 187 IYQK----LKNYEQAY 198 (203)
T ss_pred HHHH----hcchhhhh
Confidence 9999 99999875
No 398
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=78.54 E-value=40 Score=35.09 Aligned_cols=78 Identities=8% Similarity=0.068 Sum_probs=61.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCC
Q 010976 144 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 223 (496)
Q Consensus 144 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~ 223 (496)
.|++++..-|-.++.|+.....+...++ -+.|.+..++++..+|. ..+.++.+|.. ..+
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd--------------~q~al~tv~rg~~~sps---L~~~lse~yel----~nd 348 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISD--------------KQKALKTVERGIEMSPS---LTMFLSEYYEL----VND 348 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccH--------------HHHHHHHHHhcccCCCc---hheeHHHHHhh----ccc
Confidence 4778888888899999999888888888 89999999999988887 56677777766 677
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010976 224 TKEAEELWKQATKNYEKAV 242 (496)
Q Consensus 224 ~~eA~~~~~~A~~~~~~Al 242 (496)
-++-..+|++.+..+.+-+
T Consensus 349 ~e~v~~~fdk~~q~L~r~y 367 (660)
T COG5107 349 EEAVYGCFDKCTQDLKRKY 367 (660)
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 6666677777666555443
No 399
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.24 E-value=98 Score=32.87 Aligned_cols=193 Identities=10% Similarity=-0.021 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010976 138 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 217 (496)
Q Consensus 138 ~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~ 217 (496)
++--...|.+.+... .+..+++.++.+|.+.+ -++-...+++.++.+=++...--.|+..|.
T Consensus 82 ~~~veh~c~~~l~~~-e~kmal~el~q~y~en~---------------n~~l~~lWer~ve~dfnDvv~~ReLa~~yE-- 143 (711)
T COG1747 82 NQIVEHLCTRVLEYG-ESKMALLELLQCYKENG---------------NEQLYSLWERLVEYDFNDVVIGRELADKYE-- 143 (711)
T ss_pred HHHHHHHHHHHHHhc-chHHHHHHHHHHHHhcC---------------chhhHHHHHHHHHhcchhHHHHHHHHHHHH--
Confidence 344456677777664 56788999999999885 455667788888888887776666666654
Q ss_pred HHHcCCHHHHHHHHHHHHH-------------HHHHHHhcCCCCHHHHHHHH-HHHHHccCcc--hH-------HHhhhh
Q 010976 218 AKMRGRTKEAEELWKQATK-------------NYEKAVQLNWNSPQALNNWG-LALQELSAIV--PA-------REKQTI 274 (496)
Q Consensus 218 ~~~~g~~~eA~~~~~~A~~-------------~~~~Al~l~P~~~~a~~~lg-~~l~~~g~~~--~A-------~~~~~~ 274 (496)
.++-..+...|.+|+. .+.+..++-+++..-...+- .+--.+|.-. =+ +....+
T Consensus 144 ---kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 ---KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred ---HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 5777777777766553 45555555565544332221 1111222210 01 345677
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCc-HHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 010976 275 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP-NELYSQSAIYIAAAHALKPSYSVYSSA 351 (496)
Q Consensus 275 ~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~A~~~~~~a~~l~p~~~~y~~a 351 (496)
+.+|+..+...++++..+..+.-++-.-+...-+........+.-.+++. ...|..+..-|++.+.++..+-+|.+.
T Consensus 221 ~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVfHqt 298 (711)
T COG1747 221 WTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVFHQT 298 (711)
T ss_pred HHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEEecc
Confidence 89999999999999999999888887766653322111111111011111 113566677777777777766655443
No 400
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.10 E-value=14 Score=28.58 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=40.5
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh
Q 010976 133 SRQRILTFAAKRYANAIERNPEDYDALYNWAL---VLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 199 (496)
Q Consensus 133 ~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 199 (496)
+.+.+.++|+..++++++..++..+-+..+|. +|...|+ |.+.+++-.+=+.+
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk--------------yr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK--------------YREMLAFALQQLEI 72 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 35678899999999999999998887777765 5566676 88877766554443
No 401
>PF15409 PH_8: Pleckstrin homology domain
Probab=78.07 E-value=3.6 Score=32.73 Aligned_cols=77 Identities=22% Similarity=0.440 Sum_probs=43.8
Q ss_pred Chhhhhhhccccc-hhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCCCCeeeEeecCCce
Q 010976 380 PHSDWKRSQFVLN-HEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV 458 (496)
Q Consensus 380 ~~~~~~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (496)
+...|.+++|+|| ..+..++....... .. .-.+.|.+. +.|+.. ...-|.||+... |
T Consensus 10 ~lqG~~kRyFvL~~~~G~LsYy~~~~~~-----~~--------rGsi~v~~a-~is~~~-------~~~~I~idsg~~-i 67 (89)
T PF15409_consen 10 PLQGWHKRYFVLDFEKGTLSYYRNQNSG-----KL--------RGSIDVSLA-VISANK-------KSRRIDIDSGDE-I 67 (89)
T ss_pred cCCCceeEEEEEEcCCcEEEEEecCCCC-----ee--------EeEEEccce-EEEecC-------CCCEEEEEcCCe-E
Confidence 4568999999996 33444433322210 00 012222222 344432 223455664333 5
Q ss_pred -eeeecChhhhhhHHHHHHHH
Q 010976 459 -FLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 459 -~~~~~~~~~~~~~~~a~~~~ 478 (496)
.|.|.|.++...|++||+.+
T Consensus 68 ~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 68 WHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred EEEEcCCHHHHHHHHHHHHhc
Confidence 89999999999999999854
No 402
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=77.40 E-value=3.1 Score=41.47 Aligned_cols=101 Identities=19% Similarity=0.049 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976 186 LEEACKKYDEATRLCP-------------------TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 246 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P-------------------~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P 246 (496)
+..|..-|.+++..-- .-...+.+++.+-.. .+.+..|+ .....+++.++
T Consensus 238 ~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk----~~~~~~a~-------~~~~~~~~~~~ 306 (372)
T KOG0546|consen 238 YREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLK----VKGRGGAR-------FRTNEALRDER 306 (372)
T ss_pred HhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhccc----ccCCCcce-------eccccccccCh
Confidence 8888888887776411 112234556666666 77777777 67777788999
Q ss_pred CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976 247 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307 (496)
Q Consensus 247 ~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g 307 (496)
....+++.++..+..+.++ ++|++.+..+....|++..+...+..+-....
T Consensus 307 s~tka~~Rr~~~~~~~~~~----------~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNY----------DEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred hhCcHHHHHHhHHHhhhch----------hhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 9999999999999999999 99999999999999999887766665544443
No 403
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.23 E-value=80 Score=39.54 Aligned_cols=138 Identities=18% Similarity=0.028 Sum_probs=92.4
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC--------HH-
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--------HD- 205 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~--------~~- 205 (496)
.|.++.|-.+.-.|.+.. -+.++..+|..++..|+ -..|+..+++.+.++-.+ +.
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd--------------~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGD--------------ELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHhhcccccCCccccchh
Confidence 589999999999888876 67889999999999999 999999999999774222 11
Q ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc--chHHHhhhhHHH---
Q 010976 206 -AFYNWAIAISDRAKMRGRTKEAEELW--KQATKNYEKAVQLNWNSPQALNNWGLALQELSAI--VPAREKQTIVRT--- 277 (496)
Q Consensus 206 -a~~~lg~~~~~~~~~~g~~~eA~~~~--~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~--~~A~~~~~~~~~--- 277 (496)
-..-.+.+... .++|.+.-.++ .+-++.|..+.++.|.....++.+|.-|.+.-.- ...+++.|++..
T Consensus 1747 ~n~~i~~~~~L~----~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~ 1822 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLK----ITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK 1822 (2382)
T ss_pred hhhhhhhhHHHH----HHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH
Confidence 11111122222 33444333333 2345899999999998888888888444332111 112456666666
Q ss_pred HHHHHHHHHHhcCCC
Q 010976 278 AISKFRAAIQLQFDF 292 (496)
Q Consensus 278 Ai~~~~~Al~l~P~~ 292 (496)
++..|.+++..+-.+
T Consensus 1823 ~~~~~~~sl~yg~~~ 1837 (2382)
T KOG0890|consen 1823 AIYFFGRALYYGNQH 1837 (2382)
T ss_pred HHHHHHHHHHhcchh
Confidence 777788888765443
No 404
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=76.90 E-value=34 Score=38.11 Aligned_cols=127 Identities=18% Similarity=0.195 Sum_probs=84.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976 136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 215 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~ 215 (496)
+..++=|..+++-+.+++.+...+..|-.+++..|+ +++-...-.++-++.|..+..|..|..-..
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~d--------------l~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~ 158 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGD--------------LEKLRQARLEMSEIAPLPPHLWLEWLKDEL 158 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcc--------------hHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 344556777778888888888888999999999999 888888888888888888889888876665
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976 216 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 216 ~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l 288 (496)
.+.. .+.-.+... .|++++. |-+++..|...+.-+...++. ..+.++++.-...|.+||+-
T Consensus 159 ~mt~-s~~~~~v~~-------~~ekal~-dy~~v~iw~e~~~y~~~~~~~---~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 159 SMTQ-SEERKEVEE-------LFEKALG-DYNSVPIWEEVVNYLVGFGNV---AKKSEDYKKERSVFERALRS 219 (881)
T ss_pred hhcc-CcchhHHHH-------HHHHHhc-ccccchHHHHHHHHHHhcccc---ccccccchhhhHHHHHHHhh
Confidence 5211 255556664 4444442 223555555555544444442 22334447777777777764
No 405
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.90 E-value=7 Score=23.55 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 136 RILTFAAKRYANAIERNPEDYDALYNWALV 165 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~ 165 (496)
|+.+.|...|++++...|.+...|..+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467889999999999999999999877654
No 406
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.61 E-value=8.1 Score=29.69 Aligned_cols=44 Identities=27% Similarity=0.197 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 250 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~ 250 (496)
+++|+....+|+..| . .|++++|+.+|.+|++.|.. +.||....
T Consensus 3 l~kai~Lv~~A~~eD---------------~----~gny~eA~~lY~~ale~~~~--ekn~~~k~ 46 (75)
T cd02680 3 LERAHFLVTQAFDED---------------E----KGNAEEAIELYTEAVELCIN--TSNETMDQ 46 (75)
T ss_pred HHHHHHHHHHHHHhh---------------H----hhhHHHHHHHHHHHHHHHHH--hcChhhHH
Confidence 667888888886544 2 89999999999999999887 44555433
No 407
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.11 E-value=1.2e+02 Score=32.31 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=54.7
Q ss_pred HHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh---cCC----CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCc
Q 010976 252 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL---QFD----FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 324 (496)
Q Consensus 252 ~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l---~P~----~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 324 (496)
+..+|.++..+|+. ..|..+|..+++. ... .|.++|.||..++.++.
T Consensus 452 ~lL~g~~lR~Lg~~----------~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g---------------- 505 (546)
T KOG3783|consen 452 YLLKGVILRNLGDS----------EVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGG---------------- 505 (546)
T ss_pred HHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhccc----------------
Confidence 34456666666666 9999999998843 222 36899999999999986
Q ss_pred HHHHHHHHHHHHHHHhcCCcHH-------HHHHHHHhhhcC
Q 010976 325 NELYSQSAIYIAAAHALKPSYS-------VYSSALRLVRSM 358 (496)
Q Consensus 325 ~~~~~~A~~~~~~a~~l~p~~~-------~y~~al~~~~~~ 358 (496)
.+.++..++.+|.....++. ....++..++..
T Consensus 506 --~~~e~~~~L~kAr~~~~dY~lenRLh~rIqAAl~~~r~~ 544 (546)
T KOG3783|consen 506 --GLKEARALLLKAREYASDYELENRLHMRIQAALHTVRKL 544 (546)
T ss_pred --ChHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHhcc
Confidence 15678888888888776655 344455555443
No 408
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.09 E-value=23 Score=34.66 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976 159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 238 (496)
Q Consensus 159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~ 238 (496)
+...+..|...|. +.+|+...++++.++|-+...+..+-.+|.. +|+--.+++.|++-.+.+
T Consensus 282 lgkva~~yle~g~--------------~neAi~l~qr~ltldpL~e~~nk~lm~~la~----~gD~is~~khyerya~vl 343 (361)
T COG3947 282 LGKVARAYLEAGK--------------PNEAIQLHQRALTLDPLSEQDNKGLMASLAT----LGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHcCC--------------hHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----hccchhhhhHHHHHHHHH
Confidence 3445677788888 9999999999999999999999999999999 999999998887766666
Q ss_pred HHHHhcCC
Q 010976 239 EKAVQLNW 246 (496)
Q Consensus 239 ~~Al~l~P 246 (496)
++-+.++-
T Consensus 344 eaelgi~v 351 (361)
T COG3947 344 EAELGIDV 351 (361)
T ss_pred HHHhCCCc
Confidence 66555553
No 409
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=74.62 E-value=5.2 Score=32.35 Aligned_cols=55 Identities=16% Similarity=0.425 Sum_probs=43.2
Q ss_pred CceeeeecCceeecccccCCCCC-CCCeeeEeecCC-ceeeeecChhhhhhHHHHHH
Q 010976 422 RRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIHG-PVFLVADSWEALDGWLDAIR 476 (496)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~ 476 (496)
.+++.|+-..|..|+.|.-+-+| .-..|.+...++ ...+-++|.+.+..|.-.|+
T Consensus 49 rpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir 105 (107)
T cd01231 49 KPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELR 105 (107)
T ss_pred CCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHh
Confidence 46788999999999999999999 445555553233 23677889999999999886
No 410
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.54 E-value=21 Score=34.71 Aligned_cols=146 Identities=8% Similarity=-0.042 Sum_probs=102.3
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 137 ILTFAAKRYANAIERNPEDYDALYNWALVLQES--ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 137 ~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
-++.-+..+..+++-+|.+...|..+-.++..- .. +..-....++.+..|+.|...|..+-.+.
T Consensus 89 ~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~--------------~~rEl~itkklld~DsrNyH~W~YR~~vl 154 (328)
T COG5536 89 LLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPS--------------WGRELFITKKLLDSDSRNYHVWSYRRWVL 154 (328)
T ss_pred hhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcc--------------cchhHHHHHHHhcccccccceeeeEeeee
Confidence 456677789999999999999999988887665 33 77777888999999999888776554444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 215 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW---GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 215 ~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~l---g~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
.. -...+++.... +..++-..+|..|+.|..||.+. -......|++ ..+..+++-+...-.++-.+|+
T Consensus 155 ~~-ie~~~N~S~~k----~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v----isqk~l~~eL~~i~~~if~~p~ 225 (328)
T COG5536 155 RT-IEDLFNFSDLK----HELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV----ISQKYLEKELEYIFDKIFTDPD 225 (328)
T ss_pred ec-chhhccchhHH----HHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc----chHHHHHHHHHHHHhhhhcCcc
Confidence 11 00023333322 33467777889999999999887 4444556665 1222467777788888888999
Q ss_pred CHHHHHHHHHHHHH
Q 010976 292 FHRAIYNLGTVLYG 305 (496)
Q Consensus 292 ~~~a~~~lg~~~~~ 305 (496)
+..+|..+-.+...
T Consensus 226 ~~S~w~y~r~~~~~ 239 (328)
T COG5536 226 NQSVWGYLRGVSSE 239 (328)
T ss_pred ccchhhHHHHHhcc
Confidence 98888776655444
No 411
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.94 E-value=57 Score=31.55 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHHccCcchH
Q 010976 246 WNSPQALNNWGLALQELSAIVPA 268 (496)
Q Consensus 246 P~~~~a~~~lg~~l~~~g~~~~A 268 (496)
-.++..+..+|..|++.|++.+|
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A 109 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEA 109 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHH
Confidence 35899999999999999999555
No 412
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.42 E-value=8.4 Score=23.16 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 185 LLEEACKKYDEATRLCPTLHDAFYNWAIA 213 (496)
Q Consensus 185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 213 (496)
+++.+...|++++...|.+...|..+...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 38899999999999999999999876543
No 413
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=73.30 E-value=7.2 Score=31.75 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=35.6
Q ss_pred eeeecCceeecccccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976 425 IRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY 479 (496)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 479 (496)
-.|++.++ .|....+ .+..++|.|.+..-..+|.|+|.++.+.|.+||.-+.
T Consensus 48 ~~i~l~~~-~v~~~~~--~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i 99 (101)
T cd01219 48 ARIDVSGM-QVCEGDN--LERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSII 99 (101)
T ss_pred EEEecccE-EEEeCCC--CCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 45677663 3333223 3345677787555556889999999999999998663
No 414
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.17 E-value=26 Score=36.55 Aligned_cols=72 Identities=17% Similarity=0.034 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 010976 183 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 262 (496)
Q Consensus 183 ~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 262 (496)
.|++-.|-.-...++...|.++......+.+... +|.|+.+...... .++++. .-..+...+-..+..+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~----lg~ye~~~~~~s~----~~~~~~---s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSH----LGYYEQAYQDISD----VEKIIG---TTDSTLRCRLRSLHGL 370 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHH----hhhHHHHHHHhhc----hhhhhc---CCchHHHHHHHhhhch
Confidence 3556667777777777788888777777777777 8888877743321 122222 1223333444556666
Q ss_pred cCc
Q 010976 263 SAI 265 (496)
Q Consensus 263 g~~ 265 (496)
|++
T Consensus 371 ~r~ 373 (831)
T PRK15180 371 ARW 373 (831)
T ss_pred hhH
Confidence 776
No 415
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=72.77 E-value=77 Score=29.01 Aligned_cols=131 Identities=18% Similarity=0.057 Sum_probs=85.9
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
.+++..|++.|..+.. -+++.+-.++|.+++.-..... ..-+.++|..++.++-.++ +..+-++|...|
T Consensus 86 ~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~-------~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 86 DASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRK-------ADPDSEKAERYMTRACDLE--DGEACFLLSTMY 154 (248)
T ss_pred ccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCcc-------CCCCcHHHHHHHHHhccCC--CchHHHHHHHHH
Confidence 3688999999999876 5688899999999876443111 1123788999999998764 566777777766
Q ss_pred HHHHHHc-----------CCH-HHH-----HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHH
Q 010976 215 SDRAKMR-----------GRT-KEA-----EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT 277 (496)
Q Consensus 215 ~~~~~~~-----------g~~-~eA-----~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~ 277 (496)
.. - |.. +.+ .+..++|++.--+|-++ +++.+--|+...|..-.-. ..+.++
T Consensus 155 ~~----g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv------~Kde~~ 222 (248)
T KOG4014|consen 155 MG----GKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGV------PKDEDQ 222 (248)
T ss_pred hc----cchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCC------CccHHH
Confidence 43 1 111 000 13345566777777666 4788888888877543222 234477
Q ss_pred HHHHHHHHHHh
Q 010976 278 AISKFRAAIQL 288 (496)
Q Consensus 278 Ai~~~~~Al~l 288 (496)
|..+-.+|.++
T Consensus 223 Aekyk~rA~e~ 233 (248)
T KOG4014|consen 223 AEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHHHHH
Confidence 77777777765
No 416
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.65 E-value=66 Score=40.23 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976 154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 233 (496)
Q Consensus 154 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~ 233 (496)
...+.|...|.+....|. ++.|..++-.|.+.. -+.++...|..+.. +|+-..|+..+++
T Consensus 1668 ~~ge~wLqsAriaR~aG~--------------~q~A~nall~A~e~r--~~~i~~E~AK~lW~----~gd~~~Al~~Lq~ 1727 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGH--------------LQRAQNALLNAKESR--LPEIVLERAKLLWQ----TGDELNALSVLQE 1727 (2382)
T ss_pred hhHHHHHHHHHHHHhccc--------------HHHHHHHHHhhhhcc--cchHHHHHHHHHHh----hccHHHHHHHHHH
Confidence 346788888998888888 999999999998877 56788899999999 9999999954444
Q ss_pred HHHHHHHHHhcC----CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010976 234 ATKNYEKAVQLN----WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 307 (496)
Q Consensus 234 A~~~~~~Al~l~----P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g 307 (496)
.+..+.--+.-. |....... -+.+....++|-+.... -..++-+..|..+.++.|.....+|.+|..|.+.-
T Consensus 1728 ~l~~~~~~~~~~~~~~p~~~n~~i-~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll 1803 (2382)
T KOG0890|consen 1728 ILSKNFPDLHTPYTDTPQSVNLLI-FKKAKLKITKYLEESGN-FESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLL 1803 (2382)
T ss_pred HHHhhcccccCCccccchhhhhhh-hhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHh
Confidence 443333222222 11111111 11233333444111111 12356678999999999998899999996665544
No 417
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.53 E-value=30 Score=26.86 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHHHHHcCCHHHHH
Q 010976 160 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA---IAISDRAKMRGRTKEAE 228 (496)
Q Consensus 160 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg---~~~~~~~~~~g~~~eA~ 228 (496)
...|.-++..++ .++|+..++++++..++....+..+| .+|.+ .|+|.+.+
T Consensus 10 ie~GlkLY~~~~--------------~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e----~Gkyr~~L 63 (80)
T PF10579_consen 10 IEKGLKLYHQNE--------------TQQALQKWRKALEKITDREDRFRVLGYLIQAHME----WGKYREML 63 (80)
T ss_pred HHHHHHHhccch--------------HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 344566667777 99999999999999888777666655 55666 89998888
No 418
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=71.45 E-value=77 Score=31.01 Aligned_cols=73 Identities=15% Similarity=-0.026 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCcch----------H--HHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010976 236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVP----------A--REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 303 (496)
Q Consensus 236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~----------A--~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~ 303 (496)
..++.=++-.|++..++..+|..+...+=-.. + ..-....+.|+.++.+|+.++|+...++..+-.+-
T Consensus 64 ~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s 143 (277)
T PF13226_consen 64 AVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINIS 143 (277)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 66677778899999999999988775432111 1 11345578999999999999999999999998888
Q ss_pred HHcch
Q 010976 304 YGLAE 308 (496)
Q Consensus 304 ~~~g~ 308 (496)
..+|+
T Consensus 144 ~~fge 148 (277)
T PF13226_consen 144 AYFGE 148 (277)
T ss_pred hhcCC
Confidence 88885
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.42 E-value=1e+02 Score=29.83 Aligned_cols=153 Identities=14% Similarity=0.031 Sum_probs=85.7
Q ss_pred hhcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhh
Q 010976 111 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER-----NPEDYDALYNWALVLQESADNVSLDSTSPSKDAL 185 (496)
Q Consensus 111 ~~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~-----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 185 (496)
.+++++|++++.+..... .+.|++.-|.++..-.++. .+.+.+...++..++..... .......-
T Consensus 3 ~kky~eAidLL~~Ga~~l----l~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~------~~p~r~~f 72 (260)
T PF04190_consen 3 QKKYDEAIDLLYSGALIL----LKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPP------EEPERKKF 72 (260)
T ss_dssp TT-HHHHHHHHHHHHHHH----HHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-T------T-TTHHHH
T ss_pred cccHHHHHHHHHHHHHHH----HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC------CcchHHHH
Confidence 467888888877655433 3445666666554444332 24455566777777776654 11223334
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----HHH----HHHHHHHhcCCCCHHHHHHHH
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK-----QAT----KNYEKAVQLNWNSPQALNNWG 256 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~-----~A~----~~~~~Al~l~P~~~~a~~~lg 256 (496)
...|++.- +.-...-.++..+..+|..|.. .|++.+|..+|- .+. -.+....+-.|.....+...+
T Consensus 73 i~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 73 IKAAIKWS-KFGSYKFGDPELHHLLAEKLWK----EGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA 147 (260)
T ss_dssp HHHHHHHH-HTSS-TT--HHHHHHHHHHHHH----TT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred HHHHHHHH-ccCCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 55555555 2222222488999999999999 999999998872 121 223334456677777777666
Q ss_pred HH-HHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976 257 LA-LQELSAIVPAREKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 257 ~~-l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l 288 (496)
.+ |..+++. ..|...+..-++.
T Consensus 148 VL~yL~l~n~----------~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNL----------RDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBH----------HHHHHHHHHHHHH
T ss_pred HHHHHHhcCH----------HHHHHHHHHHHHH
Confidence 54 5566777 7777766555544
No 420
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=70.71 E-value=66 Score=27.37 Aligned_cols=108 Identities=13% Similarity=-0.024 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHcc
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN--YEKAVQLNWNSPQALNNWGLALQELS 263 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~--~~~Al~l~P~~~~a~~~lg~~l~~~g 263 (496)
+...+.+++..+..++.+...+..+..+|.. . +..+.++.+..-... .++++.+... ...+.....+|.+.|
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~----~-~~~~ll~~l~~~~~~yd~~~~~~~c~~-~~l~~~~~~l~~k~~ 96 (140)
T smart00299 23 LEELIPYLESALKLNSENPALQTKLIELYAK----Y-DPQKEIERLDNKSNHYDIEKVGKLCEK-AKLYEEAVELYKKDG 96 (140)
T ss_pred HHHHHHHHHHHHccCccchhHHHHHHHHHHH----H-CHHHHHHHHHhccccCCHHHHHHHHHH-cCcHHHHHHHHHhhc
Confidence 8899999999999988888888888888876 3 233444333210000 0111111111 112334455666677
Q ss_pred CcchHHH----hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010976 264 AIVPARE----KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 304 (496)
Q Consensus 264 ~~~~A~~----~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~ 304 (496)
++.+|.+ ..++++.|++++.+ ..++..|..++..+.
T Consensus 97 ~~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 97 NFKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CHHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 7755522 33556666666554 345666766665554
No 421
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.53 E-value=2e+02 Score=32.58 Aligned_cols=113 Identities=19% Similarity=-0.021 Sum_probs=80.4
Q ss_pred hHhhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 010976 132 RSRQRILTFAAKRYANAIERNPE---------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT 202 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~---------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~ 202 (496)
...+.++++|..+..++...-+. .++.....|.+....++ +++|++..+.++..-|.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~--------------~e~a~~lar~al~~L~~ 490 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGD--------------PEEAEDLARLALVQLPE 490 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhccc
Confidence 34568899999888888766544 13445566888888899 99999999999998776
Q ss_pred C-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCc
Q 010976 203 L-----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAI 265 (496)
Q Consensus 203 ~-----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~ 265 (496)
+ ..++..+|.+..- .|++++|....++|.+..++ .+-- ...+.+..+.++..+|+.
T Consensus 491 ~~~~~r~~~~sv~~~a~~~----~G~~~~Al~~~~~a~~~a~~---~~~~~l~~~~~~~~s~il~~qGq~ 553 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHI----RGELTQALALMQQAEQMARQ---HDVYHLALWSLLQQSEILEAQGQV 553 (894)
T ss_pred ccchhhhhhhhhhhHHHHH----hchHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHhhHH
Confidence 4 3567888888888 99999999655555444332 1222 234455667888888843
No 422
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=69.30 E-value=1.1e+02 Score=32.14 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHccCc
Q 010976 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA-VQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 201 P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~A-l~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
-++...|..||..... +|+++-|.++|+++-..-.-. |-.--.+.+.+..++......|++
T Consensus 344 ~~~~~~W~~Lg~~AL~----~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~ 405 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALR----QGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDI 405 (443)
T ss_dssp CSTHHHHHHHHHHHHH----TTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H
T ss_pred cCcHHHHHHHHHHHHH----cCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCH
Confidence 3578899999999999 999999996665543221111 112233444445555555544444
No 423
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=69.18 E-value=1.3e+02 Score=30.21 Aligned_cols=136 Identities=15% Similarity=0.093 Sum_probs=87.3
Q ss_pred hhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 134 RQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
..+-.+++.....+++... |.-....-.++.++..... ....++..=...|+-...+.|+ +.+-.|++.
T Consensus 268 ~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~---------aedtDW~~I~aLYdaL~~~apS-PvV~LNRAV 337 (415)
T COG4941 268 DRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARR---------AEDTDWPAIDALYDALEQAAPS-PVVTLNRAV 337 (415)
T ss_pred hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcc---------cCCCChHHHHHHHHHHHHhCCC-CeEeehHHH
Confidence 3456677888888887665 4433444444444443322 1112377666677776666665 445567777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976 213 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW---NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 289 (496)
Q Consensus 213 ~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P---~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~ 289 (496)
+... ..-...++ ...+ ++.-+| .+...+.-.|.++.++|+. .+|...|++|+.+.
T Consensus 338 Ala~----~~Gp~agL-------a~ve-~L~~~~~L~gy~~~h~~RadlL~rLgr~----------~eAr~aydrAi~La 395 (415)
T COG4941 338 ALAM----REGPAAGL-------AMVE-ALLARPRLDGYHLYHAARADLLARLGRV----------EEARAAYDRAIALA 395 (415)
T ss_pred HHHH----hhhHHhHH-------HHHH-HhhcccccccccccHHHHHHHHHHhCCh----------HHHHHHHHHHHHhc
Confidence 7766 44455555 3333 333332 4666778889999999999 99999999999999
Q ss_pred CCCHHHHHHHHH
Q 010976 290 FDFHRAIYNLGT 301 (496)
Q Consensus 290 P~~~~a~~~lg~ 301 (496)
++..+..+.+..
T Consensus 396 ~~~aer~~l~~r 407 (415)
T COG4941 396 RNAAERAFLRQR 407 (415)
T ss_pred CChHHHHHHHHH
Confidence 988776554443
No 424
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=69.10 E-value=9.9 Score=31.44 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=34.3
Q ss_pred eecccccCCCCCCCCeeeEeecCC--ceeeeecChhhhhhHHHHHH
Q 010976 433 VSVSACADLTLPPGAGLCIETIHG--PVFLVADSWEALDGWLDAIR 476 (496)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~ 476 (496)
+...+..|+..+.-..|+++|+.+ .+||..++-+++..|..||-
T Consensus 61 v~~~~~~~~~~~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv 106 (108)
T cd01258 61 VKNSSTRRLNDQRDNCFLIRTGTQVENHYLRVETHRDLASWERALV 106 (108)
T ss_pred eccCCccCcCCCCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHh
Confidence 333445555566778999999998 24999999999999999984
No 425
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=68.86 E-value=7.5 Score=32.21 Aligned_cols=87 Identities=23% Similarity=0.418 Sum_probs=50.2
Q ss_pred ChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCcee-eeecCceeeccc-ccCCCCCCCCeeeEeecC--
Q 010976 380 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAI-RIEVPDIVSVSA-CADLTLPPGAGLCIETIH-- 455 (496)
Q Consensus 380 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 455 (496)
....|.+.+|+|-..+|....+.....+ .+..++ ...-++|=..-. ---..-|-.++|++....
T Consensus 12 gkKsWKk~~f~LR~SGLYy~~Kgksk~s------------rdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q 79 (114)
T cd01259 12 GKKSWKKYYFVLRSSGLYYFPKEKTKNT------------RDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQ 79 (114)
T ss_pred CCccceEEEEEEeCCeeEEccCCCcCCH------------HHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccC
Confidence 3457999999998888877554433210 001111 111111111111 111356777888884221
Q ss_pred C--c--e-eeeecChhhhhhHHHHHHHH
Q 010976 456 G--P--V-FLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 456 ~--~--~-~~~~~~~~~~~~~~~a~~~~ 478 (496)
+ . + ||-|+|..++.-|+.|||+.
T Consensus 80 ~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 80 SKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred cccchhheeeccCCHHHHHHHHHHHHHH
Confidence 1 1 2 99999999999999999985
No 426
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.63 E-value=6.9 Score=43.72 Aligned_cols=111 Identities=20% Similarity=0.189 Sum_probs=56.7
Q ss_pred hccccCCCCCCCCCChhhhhhhccccchhhhhhhcccccc--ccc---ccc---CCCCCCCCCCCceeeeecCceeeccc
Q 010976 366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQK--QVT---RSL---SGRTGDFSPDRRAIRIEVPDIVSVSA 437 (496)
Q Consensus 366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (496)
+|||+.-. ..+....|-|+|+.|.......+--+++- ..+ .++ ...++...+.+-+.+-+--.|-.+.|
T Consensus 993 rGFLtmfe---d~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rP 1069 (1116)
T KOG3640|consen 993 RGFLTMFE---DGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRP 1069 (1116)
T ss_pred eeeeeeee---ccCCCchhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEEeecc
Confidence 57776543 23445569999999976544443333331 100 000 00111111222222222223333333
Q ss_pred ccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHHhh
Q 010976 438 CADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYAR 484 (496)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 484 (496)
..|=.=|.+.-=+++ |||-||+-+.++-|+-+|--+.++.+-
T Consensus 1070 l~~Dqep~~ie~r~R-----v~LaADTkeel~~Wls~iN~tL~~LRs 1111 (1116)
T KOG3640|consen 1070 LEDDQEPLLIEKRLR-----VMLAADTKEELQSWLSAINDTLKQLRS 1111 (1116)
T ss_pred cccccCcchhhhcce-----eeeecccHHHHHHHHHHHHHHHHHHHh
Confidence 333222221111122 799999999999999999988887664
No 427
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=67.97 E-value=16 Score=29.76 Aligned_cols=53 Identities=9% Similarity=0.166 Sum_probs=36.0
Q ss_pred eeeeecCceeecccccC-CCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976 424 AIRIEVPDIVSVSACAD-LTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY 479 (496)
Q Consensus 424 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 479 (496)
...+||..+. |+...| ..+| ++|.|-+..-...|.|.|.++.+.|.++|.-+.
T Consensus 44 ~~~i~L~~~~-V~~~~~~~~~~--~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 44 LGHLPLRGML-TEESEHEWGVP--HCFTIFGGQCAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred EEEEEcCceE-EeeccCCcCCc--eeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 4578887774 555444 3444 455555333335888999999999999997653
No 428
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=67.46 E-value=76 Score=26.98 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=60.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHH---------HHHhCCCCHHH
Q 010976 136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE---------ATRLCPTLHDA 206 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~---------Al~l~P~~~~a 206 (496)
+.....+.+++..+..++.++..+..+..+|.+.. ..+.+.+++. ++.++... ..
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~---------------~~~ll~~l~~~~~~yd~~~~~~~c~~~-~l 84 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYD---------------PQKEIERLDNKSNHYDIEKVGKLCEKA-KL 84 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC---------------HHHHHHHHHhccccCCHHHHHHHHHHc-Cc
Confidence 56778889999998888888888888888887654 3444444442 22222111 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q 010976 207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQ 260 (496)
Q Consensus 207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 260 (496)
|-....+|.. .|++.+|+..+-+-...++.|++. ...+++.|..++..+.
T Consensus 85 ~~~~~~l~~k----~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKK----DGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHh----hcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3333444555 788888876543322222333221 1346777777665554
No 429
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=67.26 E-value=20 Score=36.62 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcc--hHHHhhhhHHHHHHHHHHHHHh-cCCCHHHHHH
Q 010976 227 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV--PAREKQTIVRTAISKFRAAIQL-QFDFHRAIYN 298 (496)
Q Consensus 227 A~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~--~A~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~ 298 (496)
|+++..+|+.++++|.. -+.|+.|.++|.++..+|+.- +..++...|.+|...+++|=.. +..+..++-|
T Consensus 330 a~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diLdn 402 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDILDN 402 (404)
T ss_dssp HHHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHHhh
Confidence 45667789999998875 568899999999999999984 3344667789999999998665 2334444444
No 430
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.44 E-value=33 Score=36.36 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-cchHHHhhhhHHHHHHHHHHH
Q 010976 207 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA-IVPAREKQTIVRTAISKFRAA 285 (496)
Q Consensus 207 ~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-~~~A~~~~~~~~~Ai~~~~~A 285 (496)
++.+|.++.. +|+...|..+|...++.+.+--.--.-.|.+++.+|.+++.+|. . .++.+++.+|
T Consensus 452 ~lL~g~~lR~----Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~----------~e~~~~L~kA 517 (546)
T KOG3783|consen 452 YLLKGVILRN----LGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGL----------KEARALLLKA 517 (546)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccCh----------HHHHHHHHHH
Confidence 5677999999 99999999777766665332222223478999999999999999 7 9999999999
Q ss_pred HHhcCC
Q 010976 286 IQLQFD 291 (496)
Q Consensus 286 l~l~P~ 291 (496)
-....+
T Consensus 518 r~~~~d 523 (546)
T KOG3783|consen 518 REYASD 523 (546)
T ss_pred Hhhccc
Confidence 776644
No 431
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.69 E-value=51 Score=33.80 Aligned_cols=99 Identities=18% Similarity=0.120 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQ 233 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~ 233 (496)
.++..+|.-|...|+ ++.|+++|.++-..+.+. ...+.|+-.+-.. +|+|..-...-.+
T Consensus 151 ra~~Dl~dhy~~cG~--------------l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~----~~nw~hv~sy~~~ 212 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQ--------------LDNALRCYSRARDYCTSAKHVINMCLNLILVSIY----MGNWGHVLSYISK 212 (466)
T ss_pred HHHHHHHHHHHHhcc--------------HHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHh----hcchhhhhhHHHH
Confidence 578889999999999 999999999988777653 3445565555555 8888877755555
Q ss_pred HHHHH----HHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHH
Q 010976 234 ATKNY----EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 286 (496)
Q Consensus 234 A~~~~----~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al 286 (496)
|...- ..+-+. | +.+...-|.+...+++| +.|..+|-.+.
T Consensus 213 A~st~~~~~~~~q~v-~--~kl~C~agLa~L~lkky----------k~aa~~fL~~~ 256 (466)
T KOG0686|consen 213 AESTPDANENLAQEV-P--AKLKCAAGLANLLLKKY----------KSAAKYFLLAE 256 (466)
T ss_pred HHhCchhhhhHHHhc-C--cchHHHHHHHHHHHHHH----------HHHHHHHHhCC
Confidence 55542 222222 2 23455556666667788 88888876654
No 432
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.54 E-value=11 Score=28.87 Aligned_cols=34 Identities=21% Similarity=0.110 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHhC
Q 010976 114 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERN 152 (496)
Q Consensus 114 ~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~~ 152 (496)
.+.|+.++.+++..+ ..|+|++|+.+|.++++..
T Consensus 3 l~kai~Lv~~A~~eD-----~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 3 LERAHFLVTQAFDED-----EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHHhh-----HhhhHHHHHHHHHHHHHHH
Confidence 467888888887766 3578899999999998753
No 433
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=65.28 E-value=1.4e+02 Score=30.97 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHH-------HHHHHHHHHHHHcCCH------
Q 010976 158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY-------NWAIAISDRAKMRGRT------ 224 (496)
Q Consensus 158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~-------~lg~~~~~~~~~~g~~------ 224 (496)
....||..++.+++ |+-|...|+.+.+-.-++ .+|. ..|.++.. .+..
T Consensus 210 q~R~LAD~aFml~D--------------y~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~alsl~~----~~~~~~~k~~ 270 (414)
T PF12739_consen 210 QMRRLADLAFMLRD--------------YELAYSTYRLLKKDFKND-KAWKYLAGAQEMAALSLLM----QGQSISAKIR 270 (414)
T ss_pred HHHHHHHHHHHHcc--------------HHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHHHHHHh----cCCCCccccc
Confidence 34568999999999 999999999988753322 2333 33444444 5533
Q ss_pred -HHHHHHHHHHHHHHHHH----HhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh--c--CC---C
Q 010976 225 -KEAEELWKQATKNYEKA----VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--Q--FD---F 292 (496)
Q Consensus 225 -~eA~~~~~~A~~~~~~A----l~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l--~--P~---~ 292 (496)
++....++.|+..|.++ ......-..+....+.++...|.+ .+|...+-+.... + -. .
T Consensus 271 ~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~----------~~a~~~~~~~~~~~l~~~l~~~~~ 340 (414)
T PF12739_consen 271 KDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGY----------WEAADQLIRWTSEILESDLRPFGS 340 (414)
T ss_pred cccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCcc----------HHHHHHHHHHHHHHHhhhhhhHhh
Confidence 36667788899999884 222234456677778888888888 6666655555544 2 22 3
Q ss_pred HHHHHHHHHHH
Q 010976 293 HRAIYNLGTVL 303 (496)
Q Consensus 293 ~~a~~~lg~~~ 303 (496)
+-.+-.++.++
T Consensus 341 alllE~~a~~~ 351 (414)
T PF12739_consen 341 ALLLEQAAYCY 351 (414)
T ss_pred HHHHHHHHHhh
Confidence 44555566666
No 434
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=63.88 E-value=13 Score=27.77 Aligned_cols=33 Identities=33% Similarity=0.331 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHh
Q 010976 114 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 151 (496)
Q Consensus 114 ~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~ 151 (496)
++.|+.++.+++..+. .|++++|+.+|.+++..
T Consensus 2 ~~~A~~~~~~Av~~D~-----~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 2 LDKAIELIKKAVEADE-----AGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHH-----TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHH
Confidence 3567777777777663 57778888887777653
No 435
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.55 E-value=1.1e+02 Score=33.67 Aligned_cols=87 Identities=11% Similarity=-0.016 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHH-hCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHH
Q 010976 186 LEEACKKYDEATR-LCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGL 257 (496)
Q Consensus 186 ~~~A~~~~~~Al~-l~P~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~----~~a~~~lg~ 257 (496)
...|+++++-+++ ..+. .+.+++.+|.+|.. ...++++|...+.+|+...++ ++. ..+.+-++.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~---eT~n~~~Ae~~L~k~~~l~~~-----~~~~d~k~~~~~ll~~ 108 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLE---ETENLDLAETYLEKAILLCER-----HRLTDLKFRCQFLLAR 108 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHH
Confidence 6778999998884 2222 45788999999884 289999999555555444433 333 334556778
Q ss_pred HHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCC
Q 010976 258 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 291 (496)
Q Consensus 258 ~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~ 291 (496)
++.+.+.. . |...++++++.--+
T Consensus 109 i~~~~~~~----------~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 109 IYFKTNPK----------A-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHhcCHH----------H-HHHHHHHHHHHHhc
Confidence 88888775 4 88888888886444
No 436
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=63.35 E-value=7.2 Score=42.25 Aligned_cols=97 Identities=19% Similarity=0.276 Sum_probs=69.7
Q ss_pred hccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCCCC
Q 010976 366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPP 445 (496)
Q Consensus 366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (496)
.|.+.....+........+.++||.|..+.|...-. +.......||+.+|.+|+-..+-|.--
T Consensus 568 ~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ks-----------------p~~q~~~~Ipl~nI~avEklee~sF~~ 630 (800)
T KOG2059|consen 568 EGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKS-----------------PGKQPIYTIPLSNIRAVEKLEEKSFKM 630 (800)
T ss_pred ccceEeccccccchhhhhhhheEEEeccceeEEecC-----------------CccCcccceeHHHHHHHHHhhhhccCC
Confidence 344443333333334467888899998777665111 112346789999999999999988887
Q ss_pred CCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976 446 GAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY 479 (496)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 479 (496)
-..|.|=+.+-..|+-|.+--.+.+|.|||+=+.
T Consensus 631 knv~qVV~~drtly~Q~~n~vEandWldaL~kvs 664 (800)
T KOG2059|consen 631 KNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVS 664 (800)
T ss_pred CceEEEEecCcceeEecCCchHHHHHHHHHHHHh
Confidence 7777776555677999999999999999998665
No 437
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.11 E-value=27 Score=36.11 Aligned_cols=67 Identities=15% Similarity=0.027 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHH-------HHh-CCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010976 158 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA-------TRL-CPTLHDAFYNWAIAISDRAKMRGRTKEAEE 229 (496)
Q Consensus 158 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A-------l~l-~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~ 229 (496)
+...|..++.-+|+ |..|++.++-. ... -+-+...+|..|.+|.. ++||.+|+.
T Consensus 124 SligLlRvh~LLGD--------------Y~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylM----lrRY~DAir 185 (404)
T PF10255_consen 124 SLIGLLRVHCLLGD--------------YYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLM----LRRYADAIR 185 (404)
T ss_pred HHHHHHHHHHhccC--------------HHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHH----HHHHHHHHH
Confidence 34566678888999 99999886643 111 12255678999999998 999999998
Q ss_pred HHHHHHHHHHHHH
Q 010976 230 LWKQATKNYEKAV 242 (496)
Q Consensus 230 ~~~~A~~~~~~Al 242 (496)
.|.+.+-...+.-
T Consensus 186 ~f~~iL~yi~r~k 198 (404)
T PF10255_consen 186 TFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHhh
Confidence 8887777766654
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.46 E-value=95 Score=33.62 Aligned_cols=71 Identities=14% Similarity=-0.015 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHccC
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSA 264 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~ 264 (496)
++.|.....++ ++..=|..||.+... .|++..|.++|.+|..+-.-.| .-..++.+.+..+|....+.|+
T Consensus 653 l~iA~~la~e~-----~s~~Kw~~Lg~~al~----~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 653 LDIAFDLAVEA-----NSEVKWRQLGDAALS----AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHHHHHHHhh-----cchHHHHHHHHHHhh----cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 66665544333 567778999999999 9999999977766644322221 1123456666666666666666
Q ss_pred c
Q 010976 265 I 265 (496)
Q Consensus 265 ~ 265 (496)
.
T Consensus 724 ~ 724 (794)
T KOG0276|consen 724 N 724 (794)
T ss_pred c
Confidence 5
No 439
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.46 E-value=1.3e+02 Score=29.33 Aligned_cols=171 Identities=15% Similarity=0.110 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 010976 139 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA 218 (496)
Q Consensus 139 ~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~ 218 (496)
..|++.-...+..+|....+|..+-.+.....- .+..+...++.-...+..+++-+|.+...|..+-.++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~------~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~-- 120 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQM------VSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLEL-- 120 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhh------hcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHh--
Confidence 457777777888888888888877776655111 122234447777888999999999999999988777755
Q ss_pred HHc--CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---ccCcchHHHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976 219 KMR--GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE---LSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 293 (496)
Q Consensus 219 ~~~--g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~---~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~ 293 (496)
. .+ |..-+..-++.+..|+.|.-.|...-.++.. .+++ .++..-.++-..+|.-|+.|.
T Consensus 121 --~p~~~-------~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~-------S~~k~e~eytt~~I~tdi~N~ 184 (328)
T COG5536 121 --FPKPS-------WGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNF-------SDLKHELEYTTSLIETDIYNN 184 (328)
T ss_pred --CCCcc-------cchhHHHHHHHhcccccccceeeeEeeeeecchhhccc-------hhHHHHHHhHHHHHhhCCCCh
Confidence 3 23 3333367888999999988887766555521 1222 222444666667788899999
Q ss_pred HHHHHHHH---HHHHcchhHHhccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCcHH
Q 010976 294 RAIYNLGT---VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 346 (496)
Q Consensus 294 ~a~~~lg~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 346 (496)
.+|.+.-. ..+..|+ .++ ...+..-..++..+.-.+|++.
T Consensus 185 SaW~~r~~~~~~~~~~~~------------vis-qk~l~~eL~~i~~~if~~p~~~ 227 (328)
T COG5536 185 SAWHHRYIWIERRFNRGD------------VIS-QKYLEKELEYIFDKIFTDPDNQ 227 (328)
T ss_pred HHHHHHHHHHHHHHhhcc------------cch-HHHHHHHHHHHHhhhhcCcccc
Confidence 99988833 3333332 111 1135666777777777788776
No 440
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=61.95 E-value=5.9 Score=41.79 Aligned_cols=56 Identities=29% Similarity=0.483 Sum_probs=45.2
Q ss_pred ceeeeecCceeecccccCC-CCCCC---CeeeEeecCCceeeeecC------------hhhhhhHHHHHHHHH
Q 010976 423 RAIRIEVPDIVSVSACADL-TLPPG---AGLCIETIHGPVFLVADS------------WEALDGWLDAIRLVY 479 (496)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~------------~~~~~~~~~a~~~~~ 479 (496)
-+--|||.+|.+|+...+. .+|.| +.|.|+|.. .||+|..+ .+...+|-.||+...
T Consensus 452 yYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~-~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 452 YYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTAT-TVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred eEEeecHHHhheeeccCCcccCCCCCCCceEEEEeee-EEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 4668999999999999886 56644 568888766 78999998 556889999998653
No 441
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.30 E-value=44 Score=34.56 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976 210 WAIAISDRAKMRGRTKEAEELWKQAT----KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 285 (496)
Q Consensus 210 lg~~~~~~~~~~g~~~eA~~~~~~A~----~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A 285 (496)
|..++.- +|+|..|++..+.-- ..|. ..-+-+...++..|.+|..+++| .+|+..|...
T Consensus 128 LlRvh~L----LGDY~~Alk~l~~idl~~~~l~~---~V~~~~is~~YyvGFaylMlrRY----------~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCL----LGDYYQALKVLENIDLNKKGLYT---KVPACHISTYYYVGFAYLMLRRY----------ADAIRTFSQI 190 (404)
T ss_pred HHHHHHh----ccCHHHHHHHhhccCcccchhhc---cCcchheehHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 3344555 999999994332100 0111 11234667899999999999999 9999999888
Q ss_pred HH
Q 010976 286 IQ 287 (496)
Q Consensus 286 l~ 287 (496)
|-
T Consensus 191 L~ 192 (404)
T PF10255_consen 191 LL 192 (404)
T ss_pred HH
Confidence 75
No 442
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.46 E-value=1.1e+02 Score=35.18 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 202 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 202 ~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
+.+..|..+|.+..+ .|...+|+ +.|-+| +++..|...-.+..+.|.|
T Consensus 1102 n~p~vWsqlakAQL~----~~~v~dAi-------eSyika-----dDps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQ----GGLVKDAI-------ESYIKA-----DDPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred CChHHHHHHHHHHHh----cCchHHHH-------HHHHhc-----CCcHHHHHHHHHHHhcCcH
Confidence 344556666666665 66666666 344333 3444444444445555555
No 443
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=60.25 E-value=2.2e+02 Score=33.40 Aligned_cols=67 Identities=18% Similarity=0.100 Sum_probs=38.4
Q ss_pred HHcCCHHHHHHHHHHHHH---HHHHHHhcCCCCHHHH---HHHHHHHHHccCcchH----HHhhhhHHHHHHHHHHH
Q 010976 219 KMRGRTKEAEELWKQATK---NYEKAVQLNWNSPQAL---NNWGLALQELSAIVPA----REKQTIVRTAISKFRAA 285 (496)
Q Consensus 219 ~~~g~~~eA~~~~~~A~~---~~~~Al~l~P~~~~a~---~~lg~~l~~~g~~~~A----~~~~~~~~~Ai~~~~~A 285 (496)
.+.|+.++|++.|+.+.. ++.-+-++.+.-.+.. ..|...+.+.+++-+| .+-.++.++|+..|=+|
T Consensus 963 e~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka 1039 (1265)
T KOG1920|consen 963 ERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKA 1039 (1265)
T ss_pred HHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhH
Confidence 347777777776665432 2222234455544444 6777888888888555 23445555555554444
No 444
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.20 E-value=91 Score=32.07 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 205 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 205 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
.++..+|.-|.. .|+++.|++.|.++..++..+-. -...+.|+-.+-..+|+|
T Consensus 151 ra~~Dl~dhy~~----cG~l~~Alr~YsR~RdYCTs~kh----vInm~ln~i~VSI~~~nw 203 (466)
T KOG0686|consen 151 RALEDLGDHYLD----CGQLDNALRCYSRARDYCTSAKH----VINMCLNLILVSIYMGNW 203 (466)
T ss_pred HHHHHHHHHHHH----hccHHHHHhhhhhhhhhhcchHH----HHHHHHHHHHHHHhhcch
Confidence 577888999998 99999999888777776665432 356677777777888887
No 445
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=59.20 E-value=74 Score=30.17 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=50.7
Q ss_pred hccHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 010976 135 QRILTFAAKRYANAIERN---PED---------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT 202 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~---P~~---------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~ 202 (496)
.|+|+.|++....||+.+ |+. ++-....+......|...++ .+.........-.. -|+
T Consensus 96 ~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~---------~~~~~~~~l~~~~d-mpd 165 (230)
T PHA02537 96 IGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP---------YFLRVFLDLTTEWD-MPD 165 (230)
T ss_pred ccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh---------HHHHHHHHHHhcCC-CCh
Confidence 599999999999999987 432 23334455555555541110 01111111111111 122
Q ss_pred --CHHHHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010976 203 --LHDAFYNWAIAISDRA-----KMRGRTKEAEELWKQATKNYEKAVQLNWNS 248 (496)
Q Consensus 203 --~~~a~~~lg~~~~~~~-----~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~ 248 (496)
.+..|...|..+..-. ...++...|+ .++++|+++||+.
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al-------~~L~rA~~l~~k~ 211 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLAL-------ALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCcccHHHHH-------HHHHHHHHhCCCC
Confidence 2345566666663100 0034445555 8999999999864
No 446
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.22 E-value=1.7e+02 Score=27.71 Aligned_cols=59 Identities=19% Similarity=0.106 Sum_probs=48.0
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 204 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~ 204 (496)
+.+.+.+++||...+.-++-+|.+......+=.+|.-.|+ |++|..-++-+-.+.|++.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGd--------------w~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGD--------------WEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcch--------------HHHHHHHHHHHhhcCcccc
Confidence 3345778888888888888888888888888888888888 8888888888888888753
No 447
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.83 E-value=1.1e+02 Score=31.47 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=39.2
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCH--HHHHHH--HHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDY--DALYNW--ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 199 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~--~a~~~l--g~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 199 (496)
.+..++|..|...|...+..-|... ..+..+ |.-++..-+ +.+|.+.+++.+..
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd--------------~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFD--------------HKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHH
Confidence 4567899999999999988633333 344444 445566677 99999999998765
No 448
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.81 E-value=1.6e+02 Score=26.79 Aligned_cols=103 Identities=10% Similarity=0.108 Sum_probs=68.2
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHH-HHhCCCCHH
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDA-----LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA-TRLCPTLHD 205 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a-----~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A-l~l~P~~~~ 205 (496)
....|+-..|+..|.++-.-.| .|.. ...-+.++...|. |++-....+.. -.-+|-...
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gs--------------y~dV~srvepLa~d~n~mR~s 168 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGS--------------YDDVSSRVEPLAGDGNPMRHS 168 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhcccc--------------HHHHHHHhhhccCCCChhHHH
Confidence 4456999999999999876553 2333 3333556666776 76644433322 222566677
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976 206 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 261 (496)
Q Consensus 206 a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 261 (496)
+.-.||.+-.+ .|++..|. ..|.+... |.+.+..-.+.+.+...
T Consensus 169 ArEALglAa~k----agd~a~A~-------~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 169 AREALGLAAYK----AGDFAKAK-------SWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHhHHHHh----ccchHHHH-------HHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 88889999999 99999999 66665544 55666666666666543
No 449
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.55 E-value=20 Score=27.64 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=23.0
Q ss_pred HHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHh
Q 010976 116 AAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 151 (496)
Q Consensus 116 ~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~ 151 (496)
.|+.+..+++..+ ..|+|++|+.+|..++..
T Consensus 5 ~Ai~~a~~Ave~D-----~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRD-----QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHH
Confidence 5667777777666 357788888888888764
No 450
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=54.66 E-value=61 Score=35.26 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHccCcchHH---HhhhhHHHHHHHHHHH
Q 010976 249 PQALNNWGLALQELSAIVPAR---EKQTIVRTAISKFRAA 285 (496)
Q Consensus 249 ~~a~~~lg~~l~~~g~~~~A~---~~~~~~~~Ai~~~~~A 285 (496)
+..|+-.|.-+.+..+++||. -+.|+-.+|...+++.
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 456788888888888887663 3667778888777764
No 451
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.57 E-value=23 Score=27.49 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=27.2
Q ss_pred hcHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHh
Q 010976 112 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 151 (496)
Q Consensus 112 ~~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~ 151 (496)
+.++.|+..+++++..+.. |+.+.|+.+|++++..
T Consensus 3 ~~~~~A~~~I~kaL~~dE~-----g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 3 GYYKQAFEEISKALRADEW-----GDKEQALAHYRKGLRE 37 (79)
T ss_pred hHHHHHHHHHHHHhhhhhc-----CCHHHHHHHHHHHHHH
Confidence 4578888888888887743 6778888888888764
No 452
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.47 E-value=92 Score=34.57 Aligned_cols=154 Identities=14% Similarity=0.068 Sum_probs=88.8
Q ss_pred hhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010976 134 RQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 212 (496)
Q Consensus 134 ~~g~~~~Ai~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 212 (496)
+-|+-++|+...-.+++.. |-.++.+..-|.+|..+=- ...+...+..+.|++.|++|++..|.... =.|++.
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~-----~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~at 328 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFI-----ASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLAT 328 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhh-----ccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHH
Confidence 3589999999988888876 4567778888888865432 12334455689999999999999997533 245566
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhc
Q 010976 213 AISDRAKMRGRT-KEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 289 (496)
Q Consensus 213 ~~~~~~~~~g~~-~eA~~~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~ 289 (496)
.+.. .|+. +... +.-.-.+.++.- --.++-+| .-||.-|-|-+|.--.+++.+|+.+-+..+++.
T Consensus 329 LL~a----aG~~Fens~-------Elq~IgmkLn~LlgrKG~lekl-q~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 329 LLRA----AGEHFENSL-------ELQQIGMKLNSLLGRKGALEKL-QEYWDVATYFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred HHHH----hhhhccchH-------HHHHHHHHHHHHhhccchHHHH-HHHHhHHHhhhhhhhccCHHHHHHHHHHHhccC
Confidence 6555 4432 2222 222222222100 00000000 112222222122223345599999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 010976 290 FDFHRAIYNLGTVLYG 305 (496)
Q Consensus 290 P~~~~a~~~lg~~~~~ 305 (496)
|-....-..++.++.-
T Consensus 397 ~P~WYLkS~meni~l~ 412 (1226)
T KOG4279|consen 397 PPVWYLKSTMENILLI 412 (1226)
T ss_pred CceehHHHHHHHHHHH
Confidence 8876666666665543
No 453
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.44 E-value=21 Score=24.25 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.5
Q ss_pred HHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHH
Q 010976 252 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 287 (496)
Q Consensus 252 ~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~ 287 (496)
.++|+.+|..+|+. +.|...+++++.
T Consensus 2 kLdLA~ayie~Gd~----------e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDL----------EGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCCh----------HHHHHHHHHHHH
Confidence 36799999999999 999999999985
No 454
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.34 E-value=23 Score=24.09 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 010976 159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 198 (496)
Q Consensus 159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 198 (496)
.++|+..|..+|+ .+.|.+.+++.+.
T Consensus 2 kLdLA~ayie~Gd--------------~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGD--------------LEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCC--------------hHHHHHHHHHHHH
Confidence 3689999999999 9999999999995
No 455
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=54.08 E-value=8.1 Score=41.25 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=45.8
Q ss_pred ceeeeecCceeecccccCCCCC--CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHH
Q 010976 423 RAIRIEVPDIVSVSACADLTLP--PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVY 479 (496)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~ 479 (496)
.++..|+.++.+|=|+-...-- .-++|.+-+..|.. ||.|+|.++.|.|..+|.-+.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 430 QCISTPFSDLEDVFPVPSKYTGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred hcccCchhhhcccccccHHhhCCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhc
Confidence 5777888888888776664333 56788888888875 999999999999999998764
No 456
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=53.46 E-value=38 Score=28.54 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=53.9
Q ss_pred hccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecC-ceeecccccC----
Q 010976 366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVP-DIVSVSACAD---- 440 (496)
Q Consensus 366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---- 440 (496)
.|++..+... .....|.|.+.++..-.+.=+...+++.. .+.....+.+.+. ...+|+++..
T Consensus 5 EGwvkvP~~~---~~krGW~r~~vVv~~~Kl~lYd~e~~k~~----------~p~~~~~~vLdlrD~~fsV~~VtasDvi 71 (122)
T cd01243 5 EGHVKIPKPG---GVKKGWQRALVVVCDFKLFLYDIAEDRAS----------QPSVVISQVLDMRDPEFSVSSVLESDVI 71 (122)
T ss_pred eeeEeccCCC---CcccCceEEEEEEeCCEEEEEeCCccccC----------CccCceeEEEEcCCCCEEEEEecHHHcc
Confidence 4565555322 22237999999998777766554443220 0111122333331 2222222211
Q ss_pred ----CCCCCCCeeeEeecC--C-----ceeeeecChhhhhhHHHHHHHHHHH
Q 010976 441 ----LTLPPGAGLCIETIH--G-----PVFLVADSWEALDGWLDAIRLVYTI 481 (496)
Q Consensus 441 ----~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~a~~~~~~~ 481 (496)
--+|. .|+|.+.. . .+||.|+|..+-..|+.|+-=+..|
T Consensus 72 ~a~~kDiP~--If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l~~~ 121 (122)
T cd01243 72 HASKKDIPC--IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSELHKI 121 (122)
T ss_pred ccCcccCCe--EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHHHhh
Confidence 23332 34554322 2 2699999999999999998755544
No 457
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.39 E-value=73 Score=31.53 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 251 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a 251 (496)
+++||.+..+|+..+- .++|.+|..+|+.|+++|.-+|...-++..+
T Consensus 7 l~kaI~lv~kA~~eD~-------------------a~nY~eA~~lY~~aleYF~~~lKYE~~~~ka 53 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDN-------------------AKNYEEALRLYQNALEYFLHALKYEANNKKA 53 (439)
T ss_pred HHHHHHHHHHHhhhcc-------------------hhchHHHHHHHHHHHHHHHHHHHhhhcChhH
Confidence 7788888888887652 7899999999999999999999887655543
No 458
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=53.08 E-value=2.9e+02 Score=33.18 Aligned_cols=128 Identities=16% Similarity=0.072 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCC-------
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGR------- 223 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~~~~~g~------- 223 (496)
.....+|..+...|+ +.+|++.|..|+.+--. .+.++-.++.+..-..+...+
T Consensus 243 R~~k~~gd~~LlaG~--------------~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~ 308 (1185)
T PF08626_consen 243 RLQKVLGDLYLLAGR--------------WPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQIC 308 (1185)
T ss_pred hhhhhhhhHHHHcCC--------------HHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchh
Confidence 345567888888888 99999999999987322 234555555554433211111
Q ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHHhc----CCC--CHHHH
Q 010976 224 ---------------------------------------------TKEAEELWKQATKNYEKAVQL----NWN--SPQAL 252 (496)
Q Consensus 224 ---------------------------------------------~~eA~~~~~~A~~~~~~Al~l----~P~--~~~a~ 252 (496)
...-.+.+++++.+|.++... .|. +.++.
T Consensus 309 ~~~~~~~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~ 388 (1185)
T PF08626_consen 309 SPLCPISSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEAC 388 (1185)
T ss_pred cccCCCCCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHH
Confidence 122224578899999998622 243 45677
Q ss_pred HHHHHHHHHcc--------------------CcchHHHhhhhHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHc
Q 010976 253 NNWGLALQELS--------------------AIVPAREKQTIVRTAISKFRAAIQLQFD------FHRAIYNLGTVLYGL 306 (496)
Q Consensus 253 ~~lg~~l~~~g--------------------~~~~A~~~~~~~~~Ai~~~~~Al~l~P~------~~~a~~~lg~~~~~~ 306 (496)
..++..+.... .- .++.....+++.+... ...++..++.+|..+
T Consensus 389 lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~----------~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~l 458 (1185)
T PF08626_consen 389 LRFARFLVAQHLSDNLDHIVKRPLTPTPNISSR----------SEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSL 458 (1185)
T ss_pred HHHHHHHHHhhcccchhhhhccccccccCCCCH----------HHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhc
Confidence 77777777776 33 6777788888776542 357888999999999
Q ss_pred ch
Q 010976 307 AE 308 (496)
Q Consensus 307 g~ 308 (496)
|-
T Consensus 459 G~ 460 (1185)
T PF08626_consen 459 GF 460 (1185)
T ss_pred ch
Confidence 94
No 459
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.91 E-value=1.5e+02 Score=32.23 Aligned_cols=94 Identities=16% Similarity=0.027 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976 185 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 264 (496)
Q Consensus 185 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 264 (496)
+|-+.....++||.+.++... .+. +..+ .|+++.|. +... ..++..-|..||.+....|+
T Consensus 622 ~Fle~~g~~e~AL~~s~D~d~-rFe---lal~----lgrl~iA~-------~la~-----e~~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 622 HFLESQGMKEQALELSTDPDQ-RFE---LALK----LGRLDIAF-------DLAV-----EANSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hHhhhccchHhhhhcCCChhh-hhh---hhhh----cCcHHHHH-------HHHH-----hhcchHHHHHHHHHHhhccc
Confidence 344555566777777665321 122 2234 77777776 3322 33678889999999999999
Q ss_pred cchHHHhhhhHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcch
Q 010976 265 IVPAREKQTIVRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 265 ~~~A~~~~~~~~~Ai~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~ 308 (496)
+ ..|.++|.+|-.+ ..++.+.+..+|......|+
T Consensus 682 l----------~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 682 L----------PLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred c----------hhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 9 9999999998554 23444545555555444444
No 460
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.65 E-value=2.3e+02 Score=27.63 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh
Q 010976 136 RILTFAAKRYANAIERNPEDY----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 199 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~----~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 199 (496)
.+.++|+..|++++++.+.-. .++..+-.+++.+++ |++-+..|.+.+..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~--------------~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGN--------------YKEMMERYKQLLTY 94 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcccc--------------HHHHHHHHHHHHHH
Confidence 577888889999988887653 456666778888888 77777777776653
No 461
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=52.25 E-value=1e+02 Score=34.01 Aligned_cols=107 Identities=15% Similarity=0.037 Sum_probs=63.6
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWA-LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFYNWA 211 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--~P~~~~a~~~lg 211 (496)
-|+|++|.+.|-.+=+.+ |+ .++..+|+ |-.-.+.++-.-.- +.....++.++|
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgD--------------wfrV~qL~r~g~~d~dD~~~e~A~r~ig 803 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGD--------------WFRVYQLIRNGGSDDDDEGKEDAFRNIG 803 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhh--------------HHHHHHHHHccCCCcchHHHHHHHHHHH
Confidence 378888888876553221 11 23344555 54444433321111 111346888999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH------H---------HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH
Q 010976 212 IAISDRAKMRGRTKEAEELWKQA------T---------KNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 268 (496)
Q Consensus 212 ~~~~~~~~~~g~~~eA~~~~~~A------~---------~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A 268 (496)
..+.. +..+++|.+.|.+. + ..++.....-|.+.+.+-.+|.++...|.-++|
T Consensus 804 ~~fa~----~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qA 871 (1189)
T KOG2041|consen 804 ETFAE----MMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQA 871 (1189)
T ss_pred HHHHH----HHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHH
Confidence 98888 88888888777541 1 122233344478888888888888888887444
No 462
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=52.22 E-value=53 Score=36.38 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=85.9
Q ss_pred HHHHHHHhhccchhh--hHhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHH
Q 010976 117 AMELINSVTGVDEEG--RSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEAC 190 (496)
Q Consensus 117 A~~~~~~~l~~~~~~--~~~~g~~~~Ai~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~ 190 (496)
+...+.+++....++ .+..+++..|.-.|..++.+-|.+ .....+.+.++.+++- ++|..++
T Consensus 46 i~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l------------~~~~~~~ 113 (748)
T KOG4151|consen 46 IEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGL------------GEYPKAI 113 (748)
T ss_pred hHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCc------------cchhhhc
Confidence 344555555555433 445688888888888888888743 4556677888877665 5599999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010976 191 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 253 (496)
Q Consensus 191 ~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~ 253 (496)
....-++...|....+++.++.+|.. .++++-|+ +...-....+|.+..+..
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~a----l~k~d~a~-------rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEA----LNKLDLAV-------RDLRIVEKMDPSNVSASE 165 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHH----HHHHHHHH-------HHHHHHhcCCCCcchHHH
Confidence 99999999999999999999999988 77777777 666667788888865544
No 463
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=50.50 E-value=63 Score=28.14 Aligned_cols=52 Identities=19% Similarity=0.028 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 203 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 203 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
..+.....+..... .|++.-|. +....++..+|++..+...++.+|.++|.-
T Consensus 69 G~d~vl~~A~~~~~----~gd~~wA~-------~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALA----AGDYQWAA-------ELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHH----CT-HHHHH-------HHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 34555556666666 88888888 899999999999999999999999988875
No 464
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.35 E-value=65 Score=29.37 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010976 184 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 246 (496)
Q Consensus 184 ~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P 246 (496)
...+..++..++.++..| ++..+.+++.++.. .|+.++|. ...+++..+-|
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~----~G~~~eA~-------~~~~~~~~lyP 175 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALAL----LGDPEEAR-------QWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCC
Confidence 346777788888888888 67889999999999 99999999 66666666666
No 465
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=50.00 E-value=57 Score=28.41 Aligned_cols=49 Identities=18% Similarity=0.045 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010976 154 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 216 (496)
Q Consensus 154 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~ 216 (496)
.-.+.....+.-.+..|+ +.-|....+.++..+|++..+...++.+|..
T Consensus 68 GG~d~vl~~A~~~~~~gd--------------~~wA~~L~d~l~~adp~n~~ar~l~A~al~~ 116 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGD--------------YQWAAELLDHLVFADPDNEEARQLKADALEQ 116 (141)
T ss_dssp TCHHHHHHHHHHHHHCT---------------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 345667777888888999 9999999999999999999999999999987
No 466
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=49.61 E-value=41 Score=28.42 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=39.6
Q ss_pred eeeecCceeecccccCCCCC-----CCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010976 425 IRIEVPDIVSVSACADLTLP-----PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY 479 (496)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 479 (496)
-.|.+.+|.+|.+....+.- .-..|.|.|..-.+-|+|.+.+..+-|+.||+.+.
T Consensus 62 ~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 62 KSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred cceEEeeeEEecCCCCCCccccccccceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 35888888888755542111 23456666655567999999999999999998764
No 467
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=49.60 E-value=30 Score=26.51 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHh
Q 010976 114 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 151 (496)
Q Consensus 114 ~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~ 151 (496)
.+.|+.++.+++..+ ..|++++|+.+|.++|+.
T Consensus 3 l~~Ai~lv~~Av~~D-----~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVKKD-----QRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHH-----HhccHHHHHHHHHHHHHH
Confidence 456778888887666 346777777777777654
No 468
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=49.38 E-value=3.2e+02 Score=28.33 Aligned_cols=95 Identities=20% Similarity=0.075 Sum_probs=55.2
Q ss_pred hHhhccHHHHHHHHHHHHHhCCCCHHHHH-------HHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHH----HhC
Q 010976 132 RSRQRILTFAAKRYANAIERNPEDYDALY-------NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT----RLC 200 (496)
Q Consensus 132 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~-------~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al----~l~ 200 (496)
.+..++|+.|...|+.+.+-.-+| .+|. ..|.+++..+.....+.........++.|+..|.++- ...
T Consensus 218 aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~~~~ 296 (414)
T PF12739_consen 218 AFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRCSLP 296 (414)
T ss_pred HHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhccccccc
Confidence 455799999999999887754333 3333 3444555555421111122234456888999898842 222
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010976 201 PTLHDAFYNWAIAISDRAKMRGRTKEAEELW 231 (496)
Q Consensus 201 P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 231 (496)
..-..+....+.++.. .|.+.+|...+
T Consensus 297 ~~a~R~~ll~~ell~~----~~~~~~a~~~~ 323 (414)
T PF12739_consen 297 YYALRCALLLAELLKS----RGGYWEAADQL 323 (414)
T ss_pred cchHHHHHHHHHHHHh----cCccHHHHHHH
Confidence 2233455555566656 88888877433
No 469
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.33 E-value=64 Score=29.41 Aligned_cols=52 Identities=29% Similarity=0.340 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 010976 136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT 202 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~ 202 (496)
......++..++.++..| ++..+.+++.++...|+ .++|....+++..+.|.
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~--------------~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGD--------------PEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCc
Confidence 455667788888888888 68899999999999999 99999999999999993
No 470
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=47.59 E-value=3.3e+02 Score=27.91 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHc---CC-------------HHHHHHHHHHHHHHHHHHHhc--CCC---------------CHHH
Q 010976 205 DAFYNWAIAISDRAKMR---GR-------------TKEAEELWKQATKNYEKAVQL--NWN---------------SPQA 251 (496)
Q Consensus 205 ~a~~~lg~~~~~~~~~~---g~-------------~~eA~~~~~~A~~~~~~Al~l--~P~---------------~~~a 251 (496)
..|+.+|.+|..++... .+ ..+.-..-.+|+.+|+.-+.. .|+ ...+
T Consensus 223 ql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a 302 (371)
T PF12309_consen 223 QLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYA 302 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHH
Confidence 56888998888753221 11 001223346677777776644 232 2457
Q ss_pred HHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHH
Q 010976 252 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 294 (496)
Q Consensus 252 ~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~ 294 (496)
++.+|.+|.+.=- .....+.+++..++..|+.++..--.++.
T Consensus 303 ~f~~arl~~K~~~-~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 303 YFHIARLYSKLIT-SDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHccccC-CChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 8889998887711 12256778889999999999887544444
No 471
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=47.11 E-value=3.8e+02 Score=30.29 Aligned_cols=104 Identities=8% Similarity=0.057 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCc
Q 010976 186 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 265 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 265 (496)
.++-+..++.-+.+++.+...+..|-.++.. .|++++-. ..-.+..++-|..+..|.++..-...+..-
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk----~~dl~kl~-------~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s 163 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRK----LGDLEKLR-------QARLEMSEIAPLPPHLWLEWLKDELSMTQS 163 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHH----hcchHHHH-------HHHHHHHHhcCCChHHHHHHHHHHHhhccC
Confidence 6677888888899999999999998888888 99988876 566666778899999998888766655442
Q ss_pred chHHHhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010976 266 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 308 (496)
Q Consensus 266 ~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 308 (496)
++..++...|++|+. +-+...+|...+..+...++
T Consensus 164 -------~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~ 198 (881)
T KOG0128|consen 164 -------EERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGN 198 (881)
T ss_pred -------cchhHHHHHHHHHhc-ccccchHHHHHHHHHHhccc
Confidence 334788888999885 44556677777776666655
No 472
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.53 E-value=90 Score=34.64 Aligned_cols=80 Identities=15% Similarity=0.012 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010976 183 DALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 261 (496)
Q Consensus 183 ~~~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 261 (496)
.|+-++|+...-.+++.+ |-.++.|..-|.+|.+.+. ..+|.+|. ....|++.|++|++..|.. ..=.|++.++..
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~-~S~ytDa~-s~~~a~~WyrkaFeveP~~-~sGIN~atLL~a 332 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFI-ASNYTDAE-SLNHAIEWYRKAFEVEPLE-YSGINLATLLRA 332 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhh-ccCCcchh-hHHHHHHHHHHHhccCchh-hccccHHHHHHH
Confidence 466888888888888875 4466788888888877432 23444443 4677889999999999953 445678888888
Q ss_pred ccCc
Q 010976 262 LSAI 265 (496)
Q Consensus 262 ~g~~ 265 (496)
.|+.
T Consensus 333 aG~~ 336 (1226)
T KOG4279|consen 333 AGEH 336 (1226)
T ss_pred hhhh
Confidence 8876
No 473
>PF12854 PPR_1: PPR repeat
Probab=46.52 E-value=39 Score=21.25 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHH
Q 010976 248 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 284 (496)
Q Consensus 248 ~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~ 284 (496)
+...|+-+-..|.+.|+. ++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~----------~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRV----------DEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCH----------HHHHHHHHh
Confidence 567888999999999999 999998875
No 474
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.47 E-value=88 Score=40.72 Aligned_cols=91 Identities=22% Similarity=0.208 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976 156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 235 (496)
Q Consensus 156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~ 235 (496)
++.+...|..+.++|+ .++|-+.|..|++++-....+|..||..+..++...+.- +..-..|+
T Consensus 2812 aeff~lkG~f~~kL~~--------------~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~n---i~~a~~av 2874 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGK--------------FEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVN---ISFACNAV 2874 (3550)
T ss_pred HHHHHhhhHHHHHhcC--------------cchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcc---cHHHHHHH
Confidence 4566777888889998 999999999999999999999999999887755444442 22234566
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 010976 236 KNYEKAVQLNWNSPQALNNWGLALQELSA 264 (496)
Q Consensus 236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 264 (496)
.+|-+|.... ++..+.-.++.+++-+.-
T Consensus 2875 sCyLqA~~~~-~~skaRk~iakvLwLls~ 2902 (3550)
T KOG0889|consen 2875 SCYLQAARLY-NSSKARKLIAKVLWLLSF 2902 (3550)
T ss_pred HHHHHHhccc-cchhhHHHHHHHHHHHHh
Confidence 7777776554 244555556666665443
No 475
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=46.13 E-value=1.8e+02 Score=29.68 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh
Q 010976 156 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 199 (496)
Q Consensus 156 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 199 (496)
..+++|+|.+|..++..... .....+.+|+.+|++|-.+
T Consensus 107 a~vL~N~aa~~s~~a~~~~~-----~~~~~~k~A~~~fq~AAg~ 145 (377)
T PF03097_consen 107 ACVLFNIAALYSQLAASQNR-----STDEGLKEACNYFQRAAGI 145 (377)
T ss_dssp HHHHHHHHHHHHHHHHHS-T-----TSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc-----ccchhHHHHHHHHHHHHHH
Confidence 35677778777777752211 1334466777777776544
No 476
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=45.78 E-value=55 Score=36.30 Aligned_cols=102 Identities=21% Similarity=0.123 Sum_probs=80.9
Q ss_pred HHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010976 163 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 238 (496)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~ 238 (496)
|+.+++.++ +..+.--|..++.+-|. .+....+.+.++.. .-.|++..++ .-.
T Consensus 60 ~n~~~~K~d--------------~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~--~~l~~~~~~~-------~E~ 116 (748)
T KOG4151|consen 60 GNKLFQKRD--------------YEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQ--LGLGEYPKAI-------PEC 116 (748)
T ss_pred hhHHhhhhh--------------hhccchhhhhhheeccccchhhhhHHHHHHHHHhh--cCccchhhhc-------Cch
Confidence 677788888 99998889999999884 33455666666655 1256777777 888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976 239 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 297 (496)
Q Consensus 239 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 297 (496)
.-++...|....+++..+.+|...+++ +-|++..+-.....|.+..+..
T Consensus 117 ~la~~~~p~i~~~Ll~r~~~y~al~k~----------d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 117 ELALESQPRISKALLKRARKYEALNKL----------DLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred hhhhhccchHHHHHhhhhhHHHHHHHH----------HHHHHHHHHHhcCCCCcchHHH
Confidence 899999999999999999999999998 8899998888888998854433
No 477
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=45.59 E-value=36 Score=25.91 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHh
Q 010976 114 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 151 (496)
Q Consensus 114 ~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~ 151 (496)
.+.|+.++.+++..+ ..|++++|+.+|.+++..
T Consensus 3 ~~~A~~l~~~Av~~D-----~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 3 LQKAIELVKKAIEED-----NAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHH
Confidence 356677777776555 346667777777666543
No 478
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=44.79 E-value=54 Score=31.11 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=51.6
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-cC-CC
Q 010976 182 KDALLEEACKKYDEATRLCPTLHDA------------FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-LN-WN 247 (496)
Q Consensus 182 ~~~~~~~A~~~~~~Al~l~P~~~~a------------~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~-l~-P~ 247 (496)
..|+|+.|+...+.||+.+=..++- ...++..... .|+.-+.- |-+ .+..... .+ |+
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~----ag~~~e~~--~~~---~~~~l~~~~dmpd 165 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAAS----AGESVEPY--FLR---VFLDLTTEWDMPD 165 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHH----cCCCCChH--HHH---HHHHHHhcCCCCh
Confidence 4566999999999999985332221 2233333333 44321111 111 1111111 11 33
Q ss_pred C--HHHHHHHHHHHHHc--cCcchHHHhhhhHHHHHHHHHHHHHhcCCC
Q 010976 248 S--PQALNNWGLALQEL--SAIVPAREKQTIVRTAISKFRAAIQLQFDF 292 (496)
Q Consensus 248 ~--~~a~~~lg~~l~~~--g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~ 292 (496)
. +..|-..|..+.+. |+. ....+++..|+.++++|++++|+.
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~---~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEP---IGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCC---ccCcccHHHHHHHHHHHHHhCCCC
Confidence 2 33455566666321 111 122344589999999999999874
No 479
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=42.42 E-value=89 Score=33.49 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=29.6
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010976 189 ACKKYDEATRL-----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 236 (496)
Q Consensus 189 A~~~~~~Al~l-----~P~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~ 236 (496)
++..|.+|+.. +-.+...|..+|-.|++ .+++.+|+..|.+|-.
T Consensus 298 ~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR----~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 298 PLELFNEAISSARTYYNNHHVYPYTYLGGYYYR----HKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccceehhhHHHH----HHHHHHHHHHHHHHHH
Confidence 44555555543 33455667888888999 9999999988877654
No 480
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.36 E-value=43 Score=25.41 Aligned_cols=34 Identities=32% Similarity=0.228 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHh
Q 010976 113 QNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 151 (496)
Q Consensus 113 ~~~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~ 151 (496)
.++.|..++.+++..+. .|++++|+.+|.++++.
T Consensus 4 ~~~~A~~li~~Av~~d~-----~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 4 YLSKAKELISKALKADE-----AGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHH
Confidence 34567777777766552 46677777777776653
No 481
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.12 E-value=2e+02 Score=27.48 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHhcC--CC----HHHHHH
Q 010976 225 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF--DF----HRAIYN 298 (496)
Q Consensus 225 ~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P--~~----~~a~~~ 298 (496)
...++++.+|+..|.+.-. .---......+|.-|+..|++ ++|+..|+.+...-. .. ..++..
T Consensus 155 ~~iI~lL~~A~~~f~~~~~-~R~~~~l~~~~A~ey~~~g~~----------~~A~~~l~~~~~~yr~egW~~l~~~~l~~ 223 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ-NRMASYLSLEMAEEYFRLGDY----------DKALKLLEPAASSYRREGWWSLLTEVLWR 223 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 4556667777777765432 111234566889999999999 999999999965532 21 244555
Q ss_pred HHHHHHHcch
Q 010976 299 LGTVLYGLAE 308 (496)
Q Consensus 299 lg~~~~~~g~ 308 (496)
+-.|+..+|+
T Consensus 224 l~~Ca~~~~~ 233 (247)
T PF11817_consen 224 LLECAKRLGD 233 (247)
T ss_pred HHHHHHHhCC
Confidence 5566666665
No 482
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.94 E-value=44 Score=32.31 Aligned_cols=101 Identities=24% Similarity=0.367 Sum_probs=54.1
Q ss_pred hhccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCceeeeecCceeecccccCCCC-
Q 010976 365 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL- 443 (496)
Q Consensus 365 ~~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 443 (496)
+.||+..-. ......|.|+||+|...-|....-..++ .+.-.|||+- +|+..+.|++-
T Consensus 262 REGWLlKlg----g~rvktWKrRWFiLtdNCLYYFe~tTDK----------------EPrGIIpLeN-lsir~VedP~kP 320 (395)
T KOG0930|consen 262 REGWLLKLG----GNRVKTWKRRWFILTDNCLYYFEYTTDK----------------EPRGIIPLEN-LSIREVEDPKKP 320 (395)
T ss_pred ccceeeeec----CCcccchhheeEEeecceeeeeeeccCC----------------CCCcceeccc-cceeeccCCCCC
Confidence 357765442 2245689999999988777664432221 1223444442 23333333222
Q ss_pred -------C------------CCCeeeEeecCCceeee-ecChhhhhhHHHHHHHH------HHHHhhccc
Q 010976 444 -------P------------PGAGLCIETIHGPVFLV-ADSWEALDGWLDAIRLV------YTIYARGKA 487 (496)
Q Consensus 444 -------~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~------~~~~~~~~~ 487 (496)
| .++|=.|. +.-.||=+ |-+.++.+.|..+|+-. |++.++-|+
T Consensus 321 ~cfEly~ps~~gq~IKACKTe~DGRvVE-G~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy~mla~rK~ 389 (395)
T KOG0930|consen 321 NCFELYIPSNKGQVIKACKTEADGRVVE-GNHSVYRISAPTPEEKDEWIKSIKAAISRDPFYEMLAARKK 389 (395)
T ss_pred CeEEEecCCCCcCeeeeecccCCceeEe-ccceEEEeeCCCHHHHHHHHHHHHHHhccCcHHHHHhcccc
Confidence 2 11222222 11124655 45999999999999854 556555544
No 483
>PF12854 PPR_1: PPR repeat
Probab=41.84 E-value=61 Score=20.33 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010976 203 LHDAFYNWAIAISDRAKMRGRTKEAEELWK 232 (496)
Q Consensus 203 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 232 (496)
+...|..+-..|.+ .|+.++|.+.|+
T Consensus 6 d~~ty~~lI~~~Ck----~G~~~~A~~l~~ 31 (34)
T PF12854_consen 6 DVVTYNTLIDGYCK----AGRVDEAFELFD 31 (34)
T ss_pred cHhHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 45678888889999 999999995443
No 484
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=41.22 E-value=72 Score=32.46 Aligned_cols=103 Identities=17% Similarity=0.052 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010976 136 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 215 (496)
Q Consensus 136 g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~ 215 (496)
..+-+|+..++.++..+|.+......+..+|..+|- ...|...|...=--+=.+-..-+.+-.-+.
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~--------------~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~ 262 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGA--------------GSLALEHYESLDIKNIQLDTLGHLILDRLS 262 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHhcChHHHHHHHhHHHHHHHHh
Q ss_pred HHHHHcCCHHHHH-HHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010976 216 DRAKMRGRTKEAE-ELWKQATKNYEKAVQLNWNSPQALNNWG 256 (496)
Q Consensus 216 ~~~~~~g~~~eA~-~~~~~A~~~~~~Al~l~P~~~~a~~~lg 256 (496)
. .|.+..+. ..+..+...|.....--|+....-+..|
T Consensus 263 ~----~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~g 300 (365)
T PF09797_consen 263 T----LGPFKSAPENLLENALKFYDNSEKETPEFIIKAFENG 300 (365)
T ss_pred c----cCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCC
No 485
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.20 E-value=4.1e+02 Score=27.22 Aligned_cols=61 Identities=18% Similarity=0.039 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHh-CCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010976 159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTL-HDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 235 (496)
Q Consensus 159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~P~~-~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~ 235 (496)
....+.-++..++ |..|.+.++..+.. .++. ...+..+..+|.. +...++.+|.+.++...
T Consensus 134 ~~~~a~~l~n~~~--------------y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~--WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 134 EWRRAKELFNRYD--------------YGAAARILEELLRRLPGREEYQRYKDLCEGYDA--WDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH--HHccCHHHHHHHHHHHH
Confidence 3455677788888 99999999999985 4333 2455555555532 45888999996665443
No 486
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=40.15 E-value=4.7e+02 Score=27.58 Aligned_cols=131 Identities=16% Similarity=0.251 Sum_probs=80.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCC
Q 010976 144 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 223 (496)
Q Consensus 144 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~~~~~g~ 223 (496)
.++.-|+-+|.+.-.|+.|-.-|..++. +++-.+.|++...-.|-...+|...-.--.. ..+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s--------------~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA----~~d 91 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQES--------------MDAEREMYEQLSSPFPIMEHAWRLYMSGELA----RKD 91 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhh--------------HHHHHHHHHHhcCCCccccHHHHHHhcchhh----hhh
Confidence 4556678899999999999999999988 9998999998887777666555321110000 111
Q ss_pred HHHHH-------------HHH----------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCcchH
Q 010976 224 TKEAE-------------ELW----------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 268 (496)
Q Consensus 224 ~~eA~-------------~~~----------------------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A 268 (496)
|..-. .+| -+|.+.--.++-.+|.+...|...+..+...... .-
T Consensus 92 f~svE~lf~rCL~k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~-~k 170 (660)
T COG5107 92 FRSVESLFGRCLKKSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEEL-GK 170 (660)
T ss_pred HHHHHHHHHHHHhhhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccc-cc
Confidence 11111 111 1222222233345677777777777655432111 11
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCCH
Q 010976 269 REKQTIVRTAISKFRAAIQLQFDFH 293 (496)
Q Consensus 269 ~~~~~~~~~Ai~~~~~Al~l~P~~~ 293 (496)
.+.+.+++.-...|.+||...-++.
T Consensus 171 wEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 171 WEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccH
Confidence 3467777888889999998755543
No 487
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.94 E-value=4.5e+02 Score=27.28 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--HHhcCCC-CHHHHH
Q 010976 186 LEEACKKYDEATRL-CPT--------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK--AVQLNWN-SPQALN 253 (496)
Q Consensus 186 ~~~A~~~~~~Al~l-~P~--------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~--Al~l~P~-~~~a~~ 253 (496)
+.+|.++-+..+.- .-. .+..|+.+..+|.. .|+...-...+ ..+-+ .|.-+.. .....+
T Consensus 142 ~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~----~~~l~~~rs~l----~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 142 YKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYEL----EGRLADIRSFL----HALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHh----hcchHHHHHHH----HHHHHHhhhcCcchhHHHHHH
Confidence 88888777666543 111 23456666666666 77755443211 11111 1221221 233455
Q ss_pred HHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCcHHHHH
Q 010976 254 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL----QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS 329 (496)
Q Consensus 254 ~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 329 (496)
.|-..|...+.| +.|-....++.-- +-..++.+|.+|.+-.-+++ |.
T Consensus 214 ~LLr~yL~n~ly----------dqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld-------------------Ys 264 (493)
T KOG2581|consen 214 LLLRNYLHNKLY----------DQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD-------------------YS 264 (493)
T ss_pred HHHHHHhhhHHH----------HHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc-------------------hh
Confidence 566677777777 7777766665411 11234556666777666666 99
Q ss_pred HHHHHHHHHHhcCCcHH
Q 010976 330 QSAIYIAAAHALKPSYS 346 (496)
Q Consensus 330 ~A~~~~~~a~~l~p~~~ 346 (496)
.|..||-+|+...|...
T Consensus 265 sA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 265 SALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhCcchh
Confidence 99999999999999755
No 488
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=39.77 E-value=1.3e+02 Score=23.08 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=19.7
Q ss_pred HHHccCcchHHHhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010976 259 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 297 (496)
Q Consensus 259 l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 297 (496)
+-..|++ .+.+..+.+|++.+.+++...|++..-..
T Consensus 16 ~D~~gr~---~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 16 AEKEGNA---EDAITNYKKAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHhcCCH---HHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 3345665 22223336666666666667788765433
No 489
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.48 E-value=40 Score=35.86 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=36.7
Q ss_pred cccCCCCCCCCeeeEeecCCceeee-ecChhhhhhHHHHHHHHHHHHh
Q 010976 437 ACADLTLPPGAGLCIETIHGPVFLV-ADSWEALDGWLDAIRLVYTIYA 483 (496)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~ 483 (496)
+..|.+- .-++|.++|.++.|||+ +-|.+.+-.||.-|-+|..+|-
T Consensus 575 ~AtdY~K-Kp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fS 621 (774)
T KOG0932|consen 575 PATDYSK-KPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAFS 621 (774)
T ss_pred CCccccc-CCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhcc
Confidence 4444332 45889999999999776 5599999999999999998874
No 490
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=39.14 E-value=61 Score=26.62 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=34.4
Q ss_pred eeeeecCceeecccccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHHh
Q 010976 424 AIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYA 483 (496)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 483 (496)
+--||+..-.+++. -.+..|.|.|. +.+|...|....+..||++|.-|..-+.
T Consensus 51 KGeI~~~~~l~v~~------k~~~~F~I~tp-~RtY~l~d~~~~A~~W~~~I~~~~~~~~ 103 (104)
T PF14593_consen 51 KGEIPWSKELSVEV------KSFKTFFIHTP-KRTYYLEDPEGNAQQWVEAIEEVKKQYY 103 (104)
T ss_dssp EEEE--STT-EEEE------CSSSEEEEEET-TEEEEEE-TTS-HHHHHHHHHHHHHHHH
T ss_pred CcEEecCCceEEEE------ccCCEEEEECC-CcEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 45666664444443 24457888854 7788888888889999999998876553
No 491
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=38.54 E-value=34 Score=36.03 Aligned_cols=96 Identities=24% Similarity=0.466 Sum_probs=55.0
Q ss_pred hccccCCCCCCCCCChhhhhhhccccchhhhhhhccccccccccccCCCCCCCCCCCcee-eeecCceeecccccC-CCC
Q 010976 366 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAI-RIEVPDIVSVSACAD-LTL 443 (496)
Q Consensus 366 ~g~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~ 443 (496)
.|+|... ..+...|.+.+|+|-.-+|...-+.-.+. +....++ .+.-+.|-..-.... --.
T Consensus 320 ~GfL~~K-----~dgkKsWKk~yf~LR~SGLYys~K~tsk~------------~r~Lq~l~~~~~snVYt~i~~rKkyks 382 (622)
T KOG3751|consen 320 QGFLYLK-----EDGKKSWKKHYFVLRRSGLYYSTKGTSKE------------PRHLQCLADLHSSNVYTGIGGRKKYKS 382 (622)
T ss_pred cceeeec-----ccccccceeEEEEEecCcceEccCCCCCC------------chhhHHHHhcccCceEEeecchhccCC
Confidence 5666655 34566899999999888888743322211 1111111 222222222222221 244
Q ss_pred CCCCeeeEee--cCC----ceeeeecChhhhhhHHHHHHHH
Q 010976 444 PPGAGLCIET--IHG----PVFLVADSWEALDGWLDAIRLV 478 (496)
Q Consensus 444 ~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~a~~~~ 478 (496)
|-.++|||-. ..+ --+|-|++..+++-|+.||||.
T Consensus 383 PTd~~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~ 423 (622)
T KOG3751|consen 383 PTDYGFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLL 423 (622)
T ss_pred CCCceEEeeeccccCcccceeeeecccchhHHHHHHHHHHH
Confidence 5556666631 111 1288999999999999999985
No 492
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=38.36 E-value=2e+02 Score=24.97 Aligned_cols=78 Identities=24% Similarity=0.227 Sum_probs=45.8
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWAL-VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 213 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 213 (496)
.|++..-+.+|...=. ..-|.++|. ++..+|+ -++--+.+....+-+..++..+..+|.+
T Consensus 69 C~NlKrVi~C~~~~n~-----~se~vD~ALd~lv~~~k--------------kDqLdki~~~l~kn~~~~p~~L~kia~A 129 (161)
T PF09205_consen 69 CGNLKRVIECYAKRNK-----LSEYVDLALDILVKQGK--------------KDQLDKIYNELKKNEEINPEFLVKIANA 129 (161)
T ss_dssp -S-THHHHHHHHHTT--------HHHHHHHHHHHHTT---------------HHHHHHHHHHH-----S-HHHHHHHHHH
T ss_pred hcchHHHHHHHHHhcc-----hHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 3666667777655311 123455554 3445555 6666677777776566789999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 010976 214 ISDRAKMRGRTKEAEELWKQAT 235 (496)
Q Consensus 214 ~~~~~~~~g~~~eA~~~~~~A~ 235 (496)
|.. .|+..++-+.+.+|.
T Consensus 130 y~k----lg~~r~~~ell~~AC 147 (161)
T PF09205_consen 130 YKK----LGNTREANELLKEAC 147 (161)
T ss_dssp HHH----TT-HHHHHHHHHHHH
T ss_pred HHH----hcchhhHHHHHHHHH
Confidence 999 999999996555443
No 493
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.03 E-value=2.7e+02 Score=26.57 Aligned_cols=75 Identities=12% Similarity=-0.014 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010976 186 LEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 259 (496)
Q Consensus 186 ~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 259 (496)
-...+..+.+|+..... -......+|.-|+. .|++++|++.|+.+...|++- .-..-...++..+-.|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~----~g~~~~A~~~l~~~~~~yr~e-gW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR----LGDYDKALKLLEPAASSYRRE-GWWSLLTEVLWRLLECA 228 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHH
Confidence 44455666666554322 22345677888888 999999997777776666531 00001345677778888
Q ss_pred HHccCc
Q 010976 260 QELSAI 265 (496)
Q Consensus 260 ~~~g~~ 265 (496)
..+|+.
T Consensus 229 ~~~~~~ 234 (247)
T PF11817_consen 229 KRLGDV 234 (247)
T ss_pred HHhCCH
Confidence 888887
No 494
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=37.81 E-value=57 Score=24.69 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhccchhhhHhhccHHHHHHHHHHHHHh
Q 010976 115 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 151 (496)
Q Consensus 115 ~~A~~~~~~~l~~~~~~~~~~g~~~~Ai~~~~~al~~ 151 (496)
+.|+.++.+++..+ ..|++++|+.+|..++..
T Consensus 4 ~~a~~l~~~Av~~D-----~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 4 QQAKELIKQAVKED-----EDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHH
Confidence 45666666665555 236777777777776653
No 495
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.49 E-value=3.7e+02 Score=25.54 Aligned_cols=135 Identities=13% Similarity=0.176 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH---------------HHHcC
Q 010976 159 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-HDAFYNWAIAISDR---------------AKMRG 222 (496)
Q Consensus 159 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~---------------~~~~g 222 (496)
+..++.+..+.++ |++.+.+..+++..++.. .+=.+.++.+|... -+..+
T Consensus 4 li~~Aklaeq~eR--------------y~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 4 LIYLAKLAEQAER--------------YDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHTTH--------------HHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC--------------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc
Confidence 5567888888888 999999999999998873 33444444444332 00111
Q ss_pred C----HHHHHHHHHH------------HHHHHHHHHhcCCCCHH----HHHHHHHHHHHccCcchHHHhhhhHHHHHHHH
Q 010976 223 R----TKEAEELWKQ------------ATKNYEKAVQLNWNSPQ----ALNNWGLALQELSAIVPAREKQTIVRTAISKF 282 (496)
Q Consensus 223 ~----~~eA~~~~~~------------A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~ 282 (496)
+ ....++.|.+ .+...+..|--...+.+ .+-..|..|..+-.+.....+..-.+.|...|
T Consensus 70 ~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY 149 (236)
T PF00244_consen 70 KGNEKQVKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAY 149 (236)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhh
Confidence 1 1111222211 22222222211122222 23334555555555433333445568899999
Q ss_pred HHHHHh-----cCCCH---HHHHHHHHHHHHcc
Q 010976 283 RAAIQL-----QFDFH---RAIYNLGTVLYGLA 307 (496)
Q Consensus 283 ~~Al~l-----~P~~~---~a~~~lg~~~~~~g 307 (496)
++|+.+ .|.+| ....|.+..|+..-
T Consensus 150 ~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~ 182 (236)
T PF00244_consen 150 EEALEIAKKELPPTHPLRLGLALNYSVFYYEIL 182 (236)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHc
Confidence 999875 56666 45566666665533
No 496
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.10 E-value=2.3e+02 Score=30.78 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=41.0
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010976 135 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 214 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 214 (496)
+..++.+....+.-+.-...........+..+-..+. .++|-.+|++.+..+|+ ..++.++.-+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 84 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNE--------------TERAYALYETLIAQNND--EARYEYARRL 84 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhh--------------hHhHHHHHHHHHHhCCc--chHHHHHHHH
Confidence 3444444444444433333344444455555555565 66677777777776666 4556666666
Q ss_pred HHHHHHcCCHHHHH
Q 010976 215 SDRAKMRGRTKEAE 228 (496)
Q Consensus 215 ~~~~~~~g~~~eA~ 228 (496)
.. .|-...|.
T Consensus 85 ~~----~~~~~~~~ 94 (578)
T PRK15490 85 YN----TGLAKDAQ 94 (578)
T ss_pred Hh----hhhhhHHH
Confidence 65 66555555
No 497
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.92 E-value=2.7e+02 Score=28.78 Aligned_cols=124 Identities=13% Similarity=-0.007 Sum_probs=71.9
Q ss_pred hccHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHHhC--CCC
Q 010976 135 QRILTFAAKRYANAIER-NPE--------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--PTL 203 (496)
Q Consensus 135 ~g~~~~Ai~~~~~al~~-~P~--------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~--P~~ 203 (496)
++++.+|...-+..+.. .-. .+..|+.+..+|...++ +..-...+..-+... -++
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~--------------l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGR--------------LADIRSFLHALLRTATLRHD 204 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcc--------------hHHHHHHHHHHHHHhhhcCc
Confidence 46777777665554432 111 24456777777777777 555444444444331 112
Q ss_pred HH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh--cCCC--CHHHHHHHHHHHHHccCcchHHHhhhhH
Q 010976 204 HD----AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--LNWN--SPQALNNWGLALQELSAIVPAREKQTIV 275 (496)
Q Consensus 204 ~~----a~~~lg~~~~~~~~~~g~~~eA~~~~~~A~~~~~~Al~--l~P~--~~~a~~~lg~~l~~~g~~~~A~~~~~~~ 275 (496)
.. ..+.|-..|.. .+.|+.|. ....+..- -..+ .+..++.+|.+..-+++|
T Consensus 205 ~e~qavLiN~LLr~yL~----n~lydqa~-------~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldY---------- 263 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLH----NKLYDQAD-------KLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDY---------- 263 (493)
T ss_pred chhHHHHHHHHHHHHhh----hHHHHHHH-------HHhhcccCccccccHHHHHHHHHHhhHHHhhcch----------
Confidence 22 22333334444 56666665 55544431 1112 344567788888888888
Q ss_pred HHHHHHHHHHHHhcCCCH
Q 010976 276 RTAISKFRAAIQLQFDFH 293 (496)
Q Consensus 276 ~~Ai~~~~~Al~l~P~~~ 293 (496)
..|.++|-+|+...|++.
T Consensus 264 ssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 264 SSALEYFLQALRKAPQHA 281 (493)
T ss_pred hHHHHHHHHHHHhCcchh
Confidence 999999999999999853
No 498
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=36.54 E-value=3e+02 Score=27.91 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 010976 157 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 198 (496)
Q Consensus 157 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 198 (496)
.+++|+|.++.+++..... .....+.+|+.+|++|-.
T Consensus 107 ~VLfNigal~sq~a~~~~~-----~~~~glK~A~~~fq~AAG 143 (355)
T cd09241 107 NILYNLGALYSQLALSENR-----YTDEGLKRACSYFQASAG 143 (355)
T ss_pred HHHHHHHHHHHHHHHHcCC-----CChHHHHHHHHHHHHHHH
Confidence 4678888888777752111 112336677777777654
No 499
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=36.08 E-value=2.8e+02 Score=24.11 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHHHHh
Q 010976 236 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 288 (496)
Q Consensus 236 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~Al~l 288 (496)
+.+.....-+..+++.+..+|.+|.++|+. .+|-+.+++|-+-
T Consensus 107 ki~~~l~kn~~~~p~~L~kia~Ay~klg~~----------r~~~ell~~ACek 149 (161)
T PF09205_consen 107 KIYNELKKNEEINPEFLVKIANAYKKLGNT----------REANELLKEACEK 149 (161)
T ss_dssp HHHHHH-----S-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhcch----------hhHHHHHHHHHHh
Confidence 566665555566899999999999999999 8999988888653
No 500
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=35.94 E-value=5.4e+02 Score=27.06 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHccCcchHHHhhhhHHHHHHHHHHH
Q 010976 246 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 285 (496)
Q Consensus 246 P~~~~a~~~lg~~l~~~g~~~~A~~~~~~~~~Ai~~~~~A 285 (496)
-+++..|..||......|++ +-|..+|+++
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~----------~lAe~c~~k~ 373 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNI----------ELAEECYQKA 373 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBH----------HHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHcCCH----------HHHHHHHHhh
Confidence 45788999999999999999 9999999886
Done!