Query 010978
Match_columns 496
No_of_seqs 210 out of 422
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 18:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 3E-28 1E-32 194.4 7.3 61 262-323 2-62 (64)
2 2yus_A SWI/SNF-related matrix- 90.4 0.68 2.3E-05 37.6 6.7 49 264-318 15-63 (79)
3 2cu7_A KIAA1915 protein; nucle 88.7 1.2 4.2E-05 34.8 6.7 52 264-321 6-57 (72)
4 2yum_A ZZZ3 protein, zinc fing 85.0 1.8 6.1E-05 33.9 5.8 53 265-320 6-61 (75)
5 2hzd_A Transcriptional enhance 77.7 1.5 5.3E-05 36.6 3.2 56 264-321 3-75 (82)
6 1x41_A Transcriptional adaptor 77.4 3.3 0.00011 31.3 4.7 50 264-319 5-55 (60)
7 2cqq_A RSGI RUH-037, DNAJ homo 74.3 9 0.00031 30.6 6.7 47 268-320 9-58 (72)
8 2elk_A SPCC24B10.08C protein; 73.4 5.1 0.00017 30.2 4.8 48 267-319 9-57 (58)
9 2xag_B REST corepressor 1; ami 71.2 6.3 0.00021 41.8 6.5 54 264-323 377-430 (482)
10 2ba2_A D12_ORF131, hypothetica 69.8 6.4 0.00022 33.2 5.0 46 356-404 34-79 (85)
11 2cqr_A RSGI RUH-043, DNAJ homo 68.7 26 0.00088 28.1 8.2 50 266-318 17-67 (73)
12 2iw5_B Protein corest, REST co 67.9 8 0.00027 37.8 6.0 51 264-320 130-180 (235)
13 1ity_A TRF1; helix-turn-helix, 64.1 16 0.00055 28.1 6.0 53 262-318 5-58 (69)
14 2d9a_A B-MYB, MYB-related prot 58.3 27 0.00092 26.0 6.2 50 263-317 4-53 (60)
15 2dim_A Cell division cycle 5-l 57.9 33 0.0011 26.3 6.8 51 262-317 4-54 (70)
16 2yqk_A Arginine-glutamic acid 54.7 13 0.00043 28.7 3.9 47 262-313 4-50 (63)
17 2kes_A Synphilin-1; synphillin 54.4 15 0.0005 27.9 4.0 23 365-387 15-41 (48)
18 3sjm_A Telomeric repeat-bindin 51.9 39 0.0013 26.1 6.3 49 263-314 7-55 (64)
19 2eqr_A N-COR1, N-COR, nuclear 51.4 16 0.00056 27.7 4.0 48 260-313 5-52 (61)
20 1guu_A C-MYB, MYB proto-oncoge 49.6 44 0.0015 24.0 5.9 46 267-317 3-48 (52)
21 1wgx_A KIAA1903 protein; MYB D 43.6 33 0.0011 27.9 4.8 46 269-317 10-56 (73)
22 1gvd_A MYB proto-oncogene prot 38.0 77 0.0026 22.8 5.7 46 267-317 3-48 (52)
23 2cjj_A Radialis; plant develop 37.3 47 0.0016 27.7 5.0 47 269-318 10-57 (93)
24 1w0t_A Telomeric repeat bindin 37.3 96 0.0033 22.4 6.2 47 267-317 2-49 (53)
25 4eef_G F-HB80.4, designed hema 33.9 11 0.00038 31.1 0.6 44 269-315 22-66 (74)
26 2li6_A SWI/SNF chromatin-remod 27.7 14 0.00048 31.5 0.3 45 272-319 49-97 (116)
27 2lm1_A Lysine-specific demethy 26.1 32 0.0011 28.5 2.2 45 272-317 44-94 (107)
28 2din_A Cell division cycle 5-l 25.8 2.1E+02 0.007 21.5 6.5 49 264-319 6-54 (66)
29 2cxy_A BAF250B subunit, HBAF25 23.7 36 0.0012 29.3 2.1 45 272-317 51-101 (125)
30 2aje_A Telomere repeat-binding 23.5 1.9E+02 0.0064 24.7 6.5 51 262-315 8-60 (105)
31 1c20_A DEAD ringer protein; DN 23.4 37 0.0013 29.2 2.1 45 272-317 52-103 (128)
32 3ok8_A Brain-specific angiogen 22.4 2.2E+02 0.0076 27.4 7.4 41 354-395 71-121 (222)
33 2crg_A Metastasis associated p 22.0 83 0.0028 24.7 3.7 47 263-314 4-50 (70)
34 2eqy_A RBP2 like, jumonji, at 21.3 41 0.0014 28.9 2.0 45 272-317 42-92 (122)
35 3ghg_A Fibrinogen alpha chain; 20.5 1.2E+02 0.0041 32.9 5.6 40 354-393 109-149 (562)
36 2jrz_A Histone demethylase jar 20.1 42 0.0014 28.6 1.7 45 272-317 40-90 (117)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=3e-28 Score=194.37 Aligned_cols=61 Identities=51% Similarity=0.758 Sum_probs=57.7
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhhhhccC
Q 010978 262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM 323 (496)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~ 323 (496)
+.+|+||+||+|||++||+||++|| .++||||+||++|||+|||++||||||||||+..++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 5789999999999999999999996 799999999999999999999999999999997653
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=90.42 E-value=0.68 Score=37.61 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=40.0
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhh
Q 010978 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR 318 (496)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYR 318 (496)
...+-.||+|=+++|++||..+|+ .=+.|-+.|+ +=|..+++.|-++|-
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLP 63 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhc
Confidence 344678999999999999999974 3467777764 799999999998873
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=88.66 E-value=1.2 Score=34.81 Aligned_cols=52 Identities=27% Similarity=0.345 Sum_probs=41.3
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhhhhc
Q 010978 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAK 321 (496)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k 321 (496)
...+-.||+|=++.|+++|..+|- .=+.|-+.| +|=|-.+|+.|.++|-..+
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 445668999999999999999963 345666654 7899999999999985543
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.96 E-value=1.8 Score=33.89 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=39.9
Q ss_pred CCCcccCHHHHHHHHHHHHhhCCCCCCchH---HHHhhcCCCCccHHHHHHHhhhhhhh
Q 010978 265 KPRMRWTPELHECFVEAVNKLDGPEKATPK---AVLKLMNVEGLTIYHVKSHLQKYRLA 320 (496)
Q Consensus 265 KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK---~IL~lM~V~gLT~~hVKSHLQKYRl~ 320 (496)
..+-.||+|=+++|+++|..+| .+...|. .|-+.| +|=|..+|+.|-++|-..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 3455899999999999999996 3332233 444454 789999999999998654
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=77.75 E-value=1.5 Score=36.63 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=36.1
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHh---hc-C-------------CCCccHHHHHHHhhhhhhhc
Q 010978 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLK---LM-N-------------VEGLTIYHVKSHLQKYRLAK 321 (496)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~---lM-~-------------V~gLT~~hVKSHLQKYRl~k 321 (496)
++..-.|.++|-..|++|+...=-....+ -+|. .| | -.-=|+.+|.||||.-|..+
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 45566899999999999999872111222 2221 11 1 13457888999999876654
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=77.40 E-value=3.3 Score=31.34 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=39.6
Q ss_pred CCCCcccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCccHHHHHHHhhhhhh
Q 010978 264 HKPRMRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319 (496)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLG-G~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl 319 (496)
...|-.||+|=.+++++||.++| + .=+.|-+.| +|=|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~----~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFG----NWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTT----CHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcC----cHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 44566899999999999999996 3 235666666 68899999999888744
No 7
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=74.31 E-value=9 Score=30.64 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=36.8
Q ss_pred cccCHHHHHHHHHHHHhhCCCCCCchHH---HHhhcCCCCccHHHHHHHhhhhhhh
Q 010978 268 MRWTPELHECFVEAVNKLDGPEKATPKA---VLKLMNVEGLTIYHVKSHLQKYRLA 320 (496)
Q Consensus 268 lrWT~ELH~rFV~AV~qLGG~ekAtPK~---IL~lM~V~gLT~~hVKSHLQKYRl~ 320 (496)
-.||.|=+++|+.|+..+++ -||.+ |-+.| |=|..+|+.|-+++...
T Consensus 9 ~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 36999999999999999963 35654 55555 68999999998886544
No 8
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=73.39 E-value=5.1 Score=30.22 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=36.5
Q ss_pred CcccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCccHHHHHHHhhhhhh
Q 010978 267 RMRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319 (496)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLG-G~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl 319 (496)
+-.||+|=.+++++||.++| | .=+.|-+.|+. |=|..+++.|-++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~----~W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLG----NWADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTT----CHHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC----CHHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 44699999999999999997 4 23455556632 6788999998887743
No 9
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=71.16 E-value=6.3 Score=41.84 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=44.0
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhhhhccC
Q 010978 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM 323 (496)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~ 323 (496)
.+..-+||.+=|..|++||.+.|- .=+.|-++++- =|..+|++|.++||....+
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhCh
Confidence 456789999999999999999963 35677777665 5999999999999886543
No 10
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=69.85 E-value=6.4 Score=33.25 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCC
Q 010978 356 FTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSA 404 (496)
Q Consensus 356 itEALr~QmEVQkrLHEQLEVQR~LQLRIEaqGKYLqsiLek~qk~~~~ 404 (496)
|.+.|..|-|-=+.--||+ +.||+.+.|||+-|+.||+--+..+..
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~~~nkR 79 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQGINKR 79 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777776555555555 889999999999999999766655443
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=68.70 E-value=26 Score=28.10 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=39.5
Q ss_pred CCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhc-CCCCccHHHHHHHhhhhh
Q 010978 266 PRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLM-NVEGLTIYHVKSHLQKYR 318 (496)
Q Consensus 266 pRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM-~V~gLT~~hVKSHLQKYR 318 (496)
.+-.||.+=.++|++||..+|. -+|.+--++- -|+|=|-.+|+.|.+.+.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3456999999999999999962 2777665543 368999999999988764
No 12
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=67.87 E-value=8 Score=37.78 Aligned_cols=51 Identities=25% Similarity=0.381 Sum_probs=42.1
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhhhh
Q 010978 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA 320 (496)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~ 320 (496)
.+..-+||+|=++.|++|+..+|- .=..|-++ |++=|..+|+.|..+||..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 466788999999999999999962 24566666 5789999999999999854
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=64.07 E-value=16 Score=28.09 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=41.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCccHHHHHHHhhhhh
Q 010978 262 TAHKPRMRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR 318 (496)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLG-G~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYR 318 (496)
..++.|-.||+|=-++.+++|.++| | .=+.|.+.|+..|=|-.+++-+-..|-
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~----~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEG----NWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSS----CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC----cHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 3567888999999999999999997 3 346777888655788888887766653
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=58.32 E-value=27 Score=25.97 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=37.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhh
Q 010978 263 AHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (496)
Q Consensus 263 ~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKY 317 (496)
....|-.||+|=.++++++|.++|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3566778999999999999999962 1235555565 678888888877665
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.86 E-value=33 Score=26.33 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=39.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhh
Q 010978 262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (496)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKY 317 (496)
.....|-.||+|=.++++++|.++|- ..=+.|-+.|+ |=|-.+++-|-..|
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34556678999999999999999961 13466777775 78888888877665
No 16
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.73 E-value=13 Score=28.75 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=31.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHH
Q 010978 262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSH 313 (496)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSH 313 (496)
.+...+-.||+|=|++|.+|+.+.| -+ =..|-+.| |+.-|..+|..+
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~f 50 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELITF 50 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHHH
Confidence 4455567999999999999999995 22 23343311 566777776543
No 17
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=54.44 E-value=15 Score=27.93 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=16.9
Q ss_pred HHHHHHHHH----HHHHHHHHHhHHHH
Q 010978 365 EVQKQLHEQ----LEVQRALQLRIEEH 387 (496)
Q Consensus 365 EVQkrLHEQ----LEVQR~LQLRIEaq 387 (496)
.+-|+|+|| +.+|.+||.-+|+|
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 667888888 55777777777666
No 18
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=51.86 E-value=39 Score=26.08 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=36.0
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHh
Q 010978 263 AHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHL 314 (496)
Q Consensus 263 ~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHL 314 (496)
..+.|-.||+|=-++.+++|.++|. . .=+.|.+.+.+.|=|-.+++-.-
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHHH
Confidence 3445678999999999999999962 1 24578888877788888877543
No 19
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.37 E-value=16 Score=27.74 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=35.4
Q ss_pred CcCCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHH
Q 010978 260 SATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSH 313 (496)
Q Consensus 260 ~~~~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSH 313 (496)
+...++..-.||++=|+.|++|+.+.|- -=..|-.+ |+|=|..+|.-|
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHH--CTTSCHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHH
Confidence 3445677889999999999999999962 12455544 468888887654
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=49.57 E-value=44 Score=24.02 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=35.7
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhh
Q 010978 267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (496)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKY 317 (496)
|-.||+|=.++++++|.++|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999963 2345666665 588888888877665
No 21
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=43.59 E-value=33 Score=27.87 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHHHHhhc-CCCCccHHHHHHHhhhh
Q 010978 269 RWTPELHECFVEAVNKLDGPEKATPKAVLKLM-NVEGLTIYHVKSHLQKY 317 (496)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM-~V~gLT~~hVKSHLQKY 317 (496)
.||.+=.++|..|+..++ +.+|-+--++- -|+|=|.++|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 499999999999999993 55887765543 37899999999887665
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=38.03 E-value=77 Score=22.77 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=34.5
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhh
Q 010978 267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (496)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKY 317 (496)
|-.||+|=.++++++|.++|. ..=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999962 1124555555 688888888877665
No 23
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=37.31 E-value=47 Score=27.75 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=35.9
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHHHHhhc-CCCCccHHHHHHHhhhhh
Q 010978 269 RWTPELHECFVEAVNKLDGPEKATPKAVLKLM-NVEGLTIYHVKSHLQKYR 318 (496)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM-~V~gLT~~hVKSHLQKYR 318 (496)
.||.|=.+.|++|+.++| . -+|.+--++= -|+|=|-.+|+.|-+++.
T Consensus 10 ~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYD-K--DTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp SCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 599999999999999995 2 2565433221 247999999999988864
No 24
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=37.25 E-value=96 Score=22.45 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=35.6
Q ss_pred CcccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCccHHHHHHHhhhh
Q 010978 267 RMRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (496)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLG-G~ekAtPK~IL~lM~V~gLT~~hVKSHLQKY 317 (496)
|-.||+|=.+..+++|..+| | .=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~----~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEG----NWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT----CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC----CHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45799999999999999997 3 34667777765577777777655444
No 25
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=33.85 E-value=11 Score=31.07 Aligned_cols=44 Identities=30% Similarity=0.335 Sum_probs=35.4
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcC-CCCccHHHHHHHhh
Q 010978 269 RWTPELHECFVEAVNKLDGPEKATPKAVLKLMN-VEGLTIYHVKSHLQ 315 (496)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~-V~gLT~~hVKSHLQ 315 (496)
.||.+=.+.|..|+... .+-||.+--++-. |+|=|.+.|+.|-|
T Consensus 22 ~WT~eE~K~FE~ALa~y---p~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFT---NKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSS---CSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHC---CCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 49999999999999998 3557776554433 68999999999865
No 26
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=27.74 E-value=14 Score=31.45 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCch----HHHHhhcCCCCccHHHHHHHhhhhhh
Q 010978 272 PELHECFVEAVNKLDGPEKATP----KAVLKLMNVEGLTIYHVKSHLQKYRL 319 (496)
Q Consensus 272 ~ELH~rFV~AV~qLGG~ekAtP----K~IL~lM~V~gLT~~hVKSHLQKYRl 319 (496)
-+|+..|.. |..+||.++.+- +.|.+.||++. -..++.|-.||=+
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 467877765 788999887554 57888999987 5678887777633
No 27
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=26.08 E-value=32 Score=28.49 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCch----HHHHhhcCCCCcc--HHHHHHHhhhh
Q 010978 272 PELHECFVEAVNKLDGPEKATP----KAVLKLMNVEGLT--IYHVKSHLQKY 317 (496)
Q Consensus 272 ~ELH~rFV~AV~qLGG~ekAtP----K~IL~lM~V~gLT--~~hVKSHLQKY 317 (496)
-+|++.|.. |..+||.++.+- +.|.+.||++.-| -..++.|-.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478888876 678999986654 4678889987633 24566665555
No 28
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.81 E-value=2.1e+02 Score=21.51 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=37.4
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhhh
Q 010978 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319 (496)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl 319 (496)
...+-.||+|=.++++++|..+|. .=..|-++| |=|-.+++.|-+.|-.
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhC
Confidence 344567999999999999999963 335566644 5888999998887643
No 29
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=23.69 E-value=36 Score=29.25 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCch----HHHHhhcCCCCcc--HHHHHHHhhhh
Q 010978 272 PELHECFVEAVNKLDGPEKATP----KAVLKLMNVEGLT--IYHVKSHLQKY 317 (496)
Q Consensus 272 ~ELH~rFV~AV~qLGG~ekAtP----K~IL~lM~V~gLT--~~hVKSHLQKY 317 (496)
-+|++.|.. |..+||.++.+- +.|.+.||++.-| -..++.|-.||
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478888876 779999986543 4678899998643 23455555554
No 30
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=23.54 E-value=1.9e+02 Score=24.73 Aligned_cols=51 Identities=20% Similarity=0.151 Sum_probs=39.2
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcC--CCCccHHHHHHHhh
Q 010978 262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMN--VEGLTIYHVKSHLQ 315 (496)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~--V~gLT~~hVKSHLQ 315 (496)
..++.|-.||+|=-+..+++|.++|. . .=+.|++.+. .+|=|-.++|.+..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKdrWr 60 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKDKWK 60 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHHHHH
Confidence 46888999999999999999999973 1 2357777653 48888888986533
No 31
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=23.41 E-value=37 Score=29.23 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCch----HHHHhhcCCCCc-c--HHHHHHHhhhh
Q 010978 272 PELHECFVEAVNKLDGPEKATP----KAVLKLMNVEGL-T--IYHVKSHLQKY 317 (496)
Q Consensus 272 ~ELH~rFV~AV~qLGG~ekAtP----K~IL~lM~V~gL-T--~~hVKSHLQKY 317 (496)
-+||+.|.. |..+||.++.+- +.|.+.||++.- | -..++.|-.||
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~ 103 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKY 103 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 478888876 778999886554 467888998752 2 35667766665
No 32
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=22.44 E-value=2.2e+02 Score=27.37 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=33.0
Q ss_pred cChHHHHHHHH-HHHHHHHHHHHHH---------HHHHHhHHHHHHHHHHHH
Q 010978 354 IQFTEALRMQM-EVQKQLHEQLEVQ---------RALQLRIEEHARYLEKIV 395 (496)
Q Consensus 354 ~qitEALr~Qm-EVQkrLHEQLEVQ---------R~LQLRIEaqGKYLqsiL 395 (496)
-.|.+|| +|| |+||+|..+||.. ..|+.+||.-.||++..+
T Consensus 71 keLG~vL-~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~ 121 (222)
T 3ok8_A 71 QILGEIL-VQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSC 121 (222)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466776 455 9999999998864 689999999999998554
No 33
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=21.95 E-value=83 Score=24.66 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=32.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHh
Q 010978 263 AHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHL 314 (496)
Q Consensus 263 ~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHL 314 (496)
.++..-.||++=|+.|.+|+...| -+ =..|-+.| |++-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 456777999999999999999995 22 23343311 5677777776554
No 34
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.35 E-value=41 Score=28.90 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCch----HHHHhhcCCCCcc--HHHHHHHhhhh
Q 010978 272 PELHECFVEAVNKLDGPEKATP----KAVLKLMNVEGLT--IYHVKSHLQKY 317 (496)
Q Consensus 272 ~ELH~rFV~AV~qLGG~ekAtP----K~IL~lM~V~gLT--~~hVKSHLQKY 317 (496)
-+|++.|.. |..+||.++.+- +.|.+.||++.-+ ...++.|-.||
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~ 92 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERI 92 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHT
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 468888876 788999876543 4678899987533 24566666665
No 35
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.54 E-value=1.2e+02 Score=32.92 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=23.2
Q ss_pred cChHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010978 354 IQFTEALRMQM-EVQKQLHEQLEVQRALQLRIEEHARYLEK 393 (496)
Q Consensus 354 ~qitEALr~Qm-EVQkrLHEQLEVQR~LQLRIEaqGKYLqs 393 (496)
.||++-||-++ .++++|..||..-|.||=.|++|-.-||+
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554444443 56666666665556666666666665553
No 36
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=20.09 E-value=42 Score=28.59 Aligned_cols=45 Identities=18% Similarity=0.046 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCch----HHHHhhcCCCCcc--HHHHHHHhhhh
Q 010978 272 PELHECFVEAVNKLDGPEKATP----KAVLKLMNVEGLT--IYHVKSHLQKY 317 (496)
Q Consensus 272 ~ELH~rFV~AV~qLGG~ekAtP----K~IL~lM~V~gLT--~~hVKSHLQKY 317 (496)
-+|++.|.. |..+||.++.+- +.|.+.||++.-| -..++.|-.||
T Consensus 40 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 40 LDLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred ecHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478888876 788999876554 4678899987433 24566666665
Done!