Query 010980
Match_columns 496
No_of_seqs 258 out of 1674
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 8.2E-53 2.8E-57 439.4 26.4 286 169-468 8-386 (396)
2 2qq8_A TBC1 domain family memb 100.0 1.1E-52 3.6E-57 429.6 26.1 288 168-463 20-311 (334)
3 2qfz_A TBC1 domain family memb 100.0 1.5E-52 5.2E-57 430.3 23.8 287 168-468 25-340 (345)
4 3qye_A TBC1 domain family memb 100.0 1.8E-51 6.2E-56 420.0 16.6 271 168-460 29-307 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.7E-50 9.3E-55 407.7 16.5 261 170-461 6-275 (310)
6 4hl4_A TBC1 domain family memb 100.0 5E-48 1.7E-52 387.9 20.7 266 170-467 21-292 (292)
7 3qwl_A TBC1 domain family memb 100.0 1.7E-40 5.8E-45 332.2 26.6 260 170-466 27-288 (294)
8 2ijq_A Hypothetical protein; s 17.3 1.7E+02 0.0057 25.7 5.1 99 380-487 37-146 (161)
9 4g26_A Pentatricopeptide repea 15.5 8.1E+02 0.028 24.9 10.9 51 362-412 126-176 (501)
10 3kev_A Galieria sulfuraria DCU 14.8 1.2E+02 0.004 27.7 3.6 29 376-404 102-130 (199)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=8.2e-53 Score=439.45 Aligned_cols=286 Identities=25% Similarity=0.495 Sum_probs=251.6
Q ss_pred HHHHHhchhccCCCCCHHHHHHHHHhCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcHHHHHHHHHHhhcCChHHH
Q 010980 169 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 248 (496)
Q Consensus 169 ~~~W~~~l~~~~~~~~~~~Lr~~l~~~GIP~~~R~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~L~~~~~~~~~~~~ 248 (496)
.++|.++++.+. .++.++||+ ++++|||+.+|+.||++|+|+++.+.+ +|+.....++.+|..+++++.....
T Consensus 8 ~~kw~~lL~~~~-~~d~~~Lr~-l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~--- 80 (396)
T 1fkm_A 8 ISKFDNILKDKT-IINQQDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQH--- 80 (396)
T ss_dssp HHHHHHHHSSCS-BCCHHHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSC---
T ss_pred HHHHHHHHcCCC-CCCHHHHHH-HHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccC---
Confidence 489999998653 479999999 568999999999999999999988754 5677888899999999998754211
Q ss_pred hhhhhhhhhcccccccccccCCCccccCCCCChhHHHHHHHHHHHhhhcCCCCcccChhhhHHHHHHhcC----------
Q 010980 249 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------- 318 (496)
Q Consensus 249 ~~~~~~~e~~~qI~kDV~RT~~~~~~F~~~~~~~~~~L~rIL~ays~~np~iGY~QGM~~Iaa~lL~v~~---------- 318 (496)
....+..+||++||.||+|++++|+.+ .+++.|+|||.+|+.+||++|||||||+|+++||+++.
T Consensus 81 ---~~~~~~~~qI~~Dv~RT~p~~~~F~~~--~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~ 155 (396)
T 1fkm_A 81 ---SRDIPTWHQIEIDIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID 155 (396)
T ss_dssp ---STHHHHHHHHHHHGGGSSTTSGGGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred ---cccHHHHHHHHHHhhhhCCCcccccCc--hHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence 112244569999999999999999863 57899999999999999999999999999999998751
Q ss_pred --------C----------hHHHHHHHHHHHHhcCCCCCCCcchhhhHHHHHHHHHHHhChhhhhHHhhcCCCcchhHHH
Q 010980 319 --------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFR 380 (496)
Q Consensus 319 --------d----------E~~aFw~f~~Lm~~~~~~f~~~~~gl~~~l~~l~~LL~~~~P~L~~hL~~~~i~~~~f~~~ 380 (496)
+ |++|||||++||+++..+|..+++|+...+..|+.+|+.++|+||+||++.++.+.+|+++
T Consensus 156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r 235 (396)
T 1fkm_A 156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFR 235 (396)
T ss_dssp GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHH
T ss_pred cccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 1 8999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCchHHHHHHHHHHHhhc---------------------------------------------------c--
Q 010980 381 WVLIQFKREFEYEKTMRLWEVLWTHY---------------------------------------------------L-- 407 (496)
Q Consensus 381 WfltlF~~~~p~~~vlRLWD~~l~~g---------------------------------------------------~-- 407 (496)
||+++|+++||+++++||||+||++| .
T Consensus 236 W~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 315 (396)
T 1fkm_A 236 WMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVED 315 (396)
T ss_dssp HHHTTTGGGSCHHHHHHHHHHHHHHHC-----------------------------------------------------
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988 1
Q ss_pred -------c-hhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHhccCC
Q 010980 408 -------S-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENG 468 (496)
Q Consensus 408 -------~-~~fl~~valAiL~~~r~~IL~~~~d~~eil~~L~~lp~~----iD~d~ll~~A~~L~~~~~e~~ 468 (496)
+ ..|++|||+|||..+|+.||+ +||++++++|+++|.. .|++.++..|..++...+...
T Consensus 316 ~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~ 386 (396)
T 1fkm_A 316 SGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT 386 (396)
T ss_dssp -------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred chhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccH
Confidence 1 379999999999999999995 5999999999999964 589999999999988776654
No 2
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-52 Score=429.57 Aligned_cols=288 Identities=20% Similarity=0.374 Sum_probs=239.9
Q ss_pred CHHHHH-hchhccCCCCCHHHHHHHHHhCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcHHHHHHHHHHhhcCChH
Q 010980 168 GSEEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 246 (496)
Q Consensus 168 ~~~~W~-~~l~~~~~~~~~~~Lr~~l~~~GIP~~~R~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~L~~~~~~~~~~ 246 (496)
...+|. .++.+|+...+.++||+ ++++|||+.+|+.||+.|+|+. .+.+.+.++....+.+..|..+...+......
T Consensus 20 ~~~~W~~~il~~w~~~~~~~~lr~-l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~ 97 (334)
T 2qq8_A 20 AVLTWNNEILPNWETMWCSRKVRD-LWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVENE 97 (334)
T ss_dssp HHHHHHHTTGGGCC--CCCHHHHH-HHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHhHHhccChHHHHH-HHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCccc
Confidence 358998 59999998899999998 6699999999999999999985 35566667777666667776665443211111
Q ss_pred HH-hhhhhhhhhcccccccccccCCCccccCCCCChhHHHHHHHHHHHhhhcCCCCcccChhhhHHHHHHhcCChHHHHH
Q 010980 247 QA-RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 325 (496)
Q Consensus 247 ~~-~~~~~~~e~~~qI~kDV~RT~~~~~~F~~~~~~~~~~L~rIL~ays~~np~iGY~QGM~~Iaa~lL~v~~dE~~aFw 325 (496)
+. .......+..+||++||+||+|++++|+.. +++++.|+|||.+|+.+||++|||||||+|||+|++++ +|++|||
T Consensus 98 d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~~-~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~ 175 (334)
T 2qq8_A 98 DAGFSAADREASLELIKLDISRTFPNLCIFQQG-GPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFI 175 (334)
T ss_dssp ---------CCHHHHHHHHHHTSSGGGCSSSTT-STTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHH
T ss_pred ccccccccchhHHHHHHHHHhhcCCCchhhcCC-CchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHH
Confidence 10 000112345579999999999999999863 46789999999999999999999999999999999998 7999999
Q ss_pred HHHHHHHhcC--CCCCCCcchhhhHHHHHHHHHHHhChhhhhHHhhcCCCcchhHHHHHHHhccccCchHHHHHHHHHHH
Q 010980 326 CFVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLW 403 (496)
Q Consensus 326 ~f~~Lm~~~~--~~f~~~~~gl~~~l~~l~~LL~~~~P~L~~hL~~~~i~~~~f~~~WfltlF~~~~p~~~vlRLWD~~l 403 (496)
||++||+++. .+|..+.+++...+..|+.+++..+|+||+||++.++++.+|+++||+|+|+++||++.++||||+||
T Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l 255 (334)
T 2qq8_A 176 AFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFC 255 (334)
T ss_dssp HHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 9999999753 35777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 010980 404 THYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCIC 463 (496)
Q Consensus 404 ~~g~~~~fl~~valAiL~~~r~~IL~~~~d~~eil~~L~~lp~~iD~d~ll~~A~~L~~~ 463 (496)
++| ..|++++|+|||..+++.|++ +|+++++++|+++|..+|++.++..|..+...
T Consensus 256 ~eg--~~~l~~valaiL~~~~~~Ll~--~d~~~il~~L~~lp~~~d~~~l~~~a~~l~~~ 311 (334)
T 2qq8_A 256 RDG--EEFLFRTALGILKLFEDILTK--MDFIHMAQFLTRLPEDLPAEELFASIATIQMQ 311 (334)
T ss_dssp HHC--HHHHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHSCCTTCCHHHHHHHHHHCCCE
T ss_pred HcC--CHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHhCCCcCCHHHHHHHHHHccCc
Confidence 988 689999999999999999995 49999999999999889999999999988643
No 3
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.5e-52 Score=430.27 Aligned_cols=287 Identities=25% Similarity=0.471 Sum_probs=248.4
Q ss_pred CHHHHHhchhccCCCCCHHHHHHHHHhCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcHHHHHHHHHHhhcCChHH
Q 010980 168 GSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 247 (496)
Q Consensus 168 ~~~~W~~~l~~~~~~~~~~~Lr~~l~~~GIP~~~R~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~L~~~~~~~~~~~ 247 (496)
+.++|.++++.+ .++.++||+. +++|||+.+|+.||++|+|++|.+. ++|......++.+|..+++++......+
T Consensus 25 r~~kw~~~l~~~--~~d~~~Lr~l-~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~~~ 99 (345)
T 2qfz_A 25 RLDKFKQLLAGP--NTDLEELRRL-SWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRNDE 99 (345)
T ss_dssp HHHHHHHHHHCS--BCCHHHHHHH-HTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHcCC--CCCHHHHHHH-HHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 358999999854 4789999995 5899999999999999999988764 4567788889999999999875432111
Q ss_pred HhhhhhhhhhcccccccccccCCCccccCCCCChhHHHHHHHHHHHhhhcCCCCcccChhhhHHHHHHhcC---------
Q 010980 248 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME--------- 318 (496)
Q Consensus 248 ~~~~~~~~e~~~qI~kDV~RT~~~~~~F~~~~~~~~~~L~rIL~ays~~np~iGY~QGM~~Iaa~lL~v~~--------- 318 (496)
...+..++|++||+||+|+ ++|+.+ .+++.|+|||.+|+.+||++|||||||+||++|++++.
T Consensus 100 -----~~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~ 171 (345)
T 2qfz_A 100 -----VHQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEV 171 (345)
T ss_dssp ------CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC----
T ss_pred -----chHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccc
Confidence 1224457999999999999 999864 46789999999999999999999999999999998763
Q ss_pred ---------------ChHHHHHHHHHHHHhcCCCCCCCcchhhhHHHHHHHHHHHhChhhhhHHhhcCCCcchhHHHHHH
Q 010980 319 ---------------DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVL 383 (496)
Q Consensus 319 ---------------dE~~aFw~f~~Lm~~~~~~f~~~~~gl~~~l~~l~~LL~~~~P~L~~hL~~~~i~~~~f~~~Wfl 383 (496)
+|++|||||++||+++.++|..+++|+...+..++.+|+..+|+||+||++.++++.+|+++||+
T Consensus 172 ~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~ 251 (345)
T 2qfz_A 172 DTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMN 251 (345)
T ss_dssp -CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 28999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HhccccCchHHHHHHHHHHHhhccch-hHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHH
Q 010980 384 IQFKREFEYEKTMRLWEVLWTHYLSE-HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAE 458 (496)
Q Consensus 384 tlF~~~~p~~~vlRLWD~~l~~g~~~-~fl~~valAiL~~~r~~IL~~~~d~~eil~~L~~lp~~----iD~d~ll~~A~ 458 (496)
|+|+++||+++++||||+||++|.+. .|++|+|+|+|..+++.||++ .|+++++++|+++|.. .|++.++..|.
T Consensus 252 ~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~-~d~~~il~~L~~~p~~~~~~~di~~ll~~A~ 330 (345)
T 2qfz_A 252 NLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEE-KDFQELLLFLQNLPTAHWDDEDISLLLAEAY 330 (345)
T ss_dssp TTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHC-CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHH
T ss_pred HHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHcCCCcCCchhHHHHHHHHHH
Confidence 99999999999999999999988543 389999999999999999976 4999999999999965 37999999999
Q ss_pred HHHHHhccCC
Q 010980 459 ALCICAGENG 468 (496)
Q Consensus 459 ~L~~~~~e~~ 468 (496)
.+......++
T Consensus 331 ~l~~~~~~~~ 340 (345)
T 2qfz_A 331 RLKFAFADAP 340 (345)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHhhH
Confidence 9998875443
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.8e-51 Score=419.96 Aligned_cols=271 Identities=20% Similarity=0.386 Sum_probs=236.2
Q ss_pred CHHHHHhchhccCC---CCCHHHHHHHHHhCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcHHHHHHHHHHhhcCC
Q 010980 168 GSEEWTTFLDNEGR---VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 244 (496)
Q Consensus 168 ~~~~W~~~l~~~~~---~~~~~~Lr~~l~~~GIP~~~R~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~L~~~~~~~~ 244 (496)
+.++|.++++++|+ ..+.++|+++ +++|||+.+|+.||+.|+|+.+...+..+ ....++..|..+.++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~l~~~-~~~GIP~~lR~~vW~~Llg~~~~~~~~~~---~~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEKMHSA-VGQGVPRHHRGEIWKFLAEQFHLKHQFPS---KQQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHHHHHH-HHTCCCGGGHHHHHHHHHHHHHHHCCCCS---SSCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHHHHHH-HHcCCCHHHHHHHHHHHhCcchhhhcchh---hhhhchHHHHHHHHhcC---
Confidence 45789999988887 4688999995 58999999999999999998542111000 01234567888876532
Q ss_pred hHHHhhhhhhhhhcccccccccccCCCccccCCCCChhHHHHHHHHHHHhhhcCCCCcccChhhhHHHHHHhcCChHHHH
Q 010980 245 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 324 (496)
Q Consensus 245 ~~~~~~~~~~~e~~~qI~kDV~RT~~~~~~F~~~~~~~~~~L~rIL~ays~~np~iGY~QGM~~Iaa~lL~v~~dE~~aF 324 (496)
...++|++||+||+|++++|..+.+++++.|+|||.+|+.+||++|||||||+||++|++++ +|++||
T Consensus 102 -----------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF 169 (331)
T 3qye_A 102 -----------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAF 169 (331)
T ss_dssp -----------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHH
T ss_pred -----------CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHH
Confidence 11248999999999999999998888999999999999999999999999999999999999 799999
Q ss_pred HHHHHHHHhc--CCCCCCCcchhhhHHHHHHHHHHHhChhhhhHHhhcCCCcchhHHHHHHHhccccCchHHHHHHHHHH
Q 010980 325 WCFVALMERL--GPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVL 402 (496)
Q Consensus 325 w~f~~Lm~~~--~~~f~~~~~gl~~~l~~l~~LL~~~~P~L~~hL~~~~i~~~~f~~~WfltlF~~~~p~~~vlRLWD~~ 402 (496)
|||++||+++ ..+|.+++++++..+..++.+++.++|+||+||++.++.+.+|+++||+|+|+++||++.++||||+|
T Consensus 170 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 170 KMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 9999999874 55788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 010980 403 WTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRI---DLDAILRDAEAL 460 (496)
Q Consensus 403 l~~g~~~~fl~~valAiL~~~r~~IL~~~~d~~eil~~L~~lp~~i---D~d~ll~~A~~L 460 (496)
|++| ..+++++|+|||+.+++.||+++ |+++++++|++.++++ |++.+++.|..+
T Consensus 250 l~~g--~~~l~~valaiL~~~~~~ll~~~-~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 250 FLQG--TEVIFKVALSLLGSHKPLILQHE-NLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHHC--TTHHHHHHHHHHHHTHHHHHTCC-SHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred HHCC--cHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 9998 56999999999999999999875 9999999999965566 688888888765
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-50 Score=407.70 Aligned_cols=261 Identities=24% Similarity=0.415 Sum_probs=230.7
Q ss_pred HHHHhchhccCCCC--CHHHHHHHHHhCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcHHHHHHHHHHhhcCChHH
Q 010980 170 EEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 247 (496)
Q Consensus 170 ~~W~~~l~~~~~~~--~~~~Lr~~l~~~GIP~~~R~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~L~~~~~~~~~~~ 247 (496)
++|.+++++|+... +.++|++ ++++|||+.+|+.||+.|+|+.+. ....+.|..+..+. +
T Consensus 6 ~~W~~~~~~w~~~~~~~~~~l~~-l~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~---~--- 67 (310)
T 3hzj_A 6 YSWGELLGKWHSNLGARPKGLST-LVKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKD---S--- 67 (310)
T ss_dssp CCHHHHHHHHHTSTTSCCTTHHH-HHHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSC---C---
T ss_pred HHHHHHHHHHhhhcccCHHHHHH-HHHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhcc---C---
Confidence 68999998876654 6688998 458999999999999999999652 12346687775431 1
Q ss_pred HhhhhhhhhhcccccccccccCCCccccCCCCChhHHHHHHHHHHHhhhcCCCCcccChhhhHHHHHHhcCChHHHHHHH
Q 010980 248 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCF 327 (496)
Q Consensus 248 ~~~~~~~~e~~~qI~kDV~RT~~~~~~F~~~~~~~~~~L~rIL~ays~~np~iGY~QGM~~Iaa~lL~v~~dE~~aFw~f 327 (496)
+..++|++||+||+|++++|..+.+.+++.|+|||.+|+.+||++|||||||+||++|++++ +|++|||||
T Consensus 68 --------~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l 138 (310)
T 3hzj_A 68 --------AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVL 138 (310)
T ss_dssp --------TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHH
T ss_pred --------CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHH
Confidence 12358999999999999999998888999999999999999999999999999999999999 799999999
Q ss_pred HHHHHh--cCCCCCCCcchhhhHHHHHHHHHHHhChhhhhHHhhcCCCcchhHHHHHHHhccccCchHHHHHHHHHHHhh
Q 010980 328 VALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTH 405 (496)
Q Consensus 328 ~~Lm~~--~~~~f~~~~~gl~~~l~~l~~LL~~~~P~L~~hL~~~~i~~~~f~~~WfltlF~~~~p~~~vlRLWD~~l~~ 405 (496)
+++|++ +...|.++++++...+..++.+++.++|+||+||++.++++.+|+++||+|+|+++||++.++||||+++++
T Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~ 218 (310)
T 3hzj_A 139 VKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCE 218 (310)
T ss_dssp HHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 999987 455787888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHH-hCCCC----CCHHHHHHHHHHHH
Q 010980 406 YLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFIN-ELSGR----IDLDAILRDAEALC 461 (496)
Q Consensus 406 g~~~~fl~~valAiL~~~r~~IL~~~~d~~eil~~L~-~lp~~----iD~d~ll~~A~~L~ 461 (496)
| ..+++++|+|||..+++.|++. |+++++++++ ++|.. .|++.+++.|..+.
T Consensus 219 g--~~~l~~v~lail~~~~~~Ll~~--d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l~ 275 (310)
T 3hzj_A 219 G--LNIIFHVALALLKTSKEDLLQA--DFEGALKFFRVQLPKRYRAEENARRLMEQACNIK 275 (310)
T ss_dssp C--TTHHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHSC
T ss_pred C--cHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhCcccccccccHHHHHHHHHhcC
Confidence 8 5789999999999999999964 9999999997 56633 58999999998873
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=5e-48 Score=387.94 Aligned_cols=266 Identities=18% Similarity=0.267 Sum_probs=225.3
Q ss_pred HHHHhchhccCCCCCHHHHHHHHHhC-C-CChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcHHHHHHHHHHhhcCChHH
Q 010980 170 EEWTTFLDNEGRVMDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 247 (496)
Q Consensus 170 ~~W~~~l~~~~~~~~~~~Lr~~l~~~-G-IP~~~R~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~L~~~~~~~~~~~ 247 (496)
++++..+. +..+|.++||+.+..+ | +|+++|+.||+.|+|+.+.+... .|.....
T Consensus 21 ~~i~~~l~--~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~------------~~~~~~~--------- 77 (292)
T 4hl4_A 21 AEIHQALN--SDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP------------ISGKNLR--------- 77 (292)
T ss_dssp HHHHHHHT--SSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS------------CCCTTHH---------
T ss_pred HHHHHHHc--CCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC------------chhhhhc---------
Confidence 44555553 4558999999965443 3 79999999999999998765321 1111000
Q ss_pred HhhhhhhhhhcccccccccccCCCccccCCC--CChhHHHHHHHHHHHhhhcCCCCcccChhhhHHHHHHhcCChHHHHH
Q 010980 248 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGD--DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 325 (496)
Q Consensus 248 ~~~~~~~~e~~~qI~kDV~RT~~~~~~F~~~--~~~~~~~L~rIL~ays~~np~iGY~QGM~~Iaa~lL~v~~dE~~aFw 325 (496)
...+..+||++||.||+|+++.|..+ ...+++.|.|||.+|+.+||++|||||||+||++|++++ +|++|||
T Consensus 78 -----~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~ 151 (292)
T 4hl4_A 78 -----QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATS 151 (292)
T ss_dssp -----HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHH
T ss_pred -----ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHH
Confidence 01234569999999999999988642 244678999999999999999999999999999999999 7999999
Q ss_pred HHHHHHHhcCC-CCCCCcchhhhHHHHHHHHHHHhChhhhhHHhhcCCCcchhHHHHHHHhccccCc-hHHHHHHHHHHH
Q 010980 326 CFVALMERLGP-NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE-YEKTMRLWEVLW 403 (496)
Q Consensus 326 ~f~~Lm~~~~~-~f~~~~~gl~~~l~~l~~LL~~~~P~L~~hL~~~~i~~~~f~~~WfltlF~~~~p-~~~vlRLWD~~l 403 (496)
||+++|+...+ .|.+++.+++..+..++.+++..+|+||+||++.++. .+|+++||+|+|++++| ++.++||||+++
T Consensus 152 ~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l 230 (292)
T 4hl4_A 152 LVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFL 230 (292)
T ss_dssp HHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence 99999997655 5677888999999999999999999999999999995 68999999999999996 999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccC
Q 010980 404 THYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGEN 467 (496)
Q Consensus 404 ~~g~~~~fl~~valAiL~~~r~~IL~~~~d~~eil~~L~~lp~~iD~d~ll~~A~~L~~~~~e~ 467 (496)
++| ..+++|+|+||+..++++||+++.|+++++.+++++|..+|++.++..|..|+...|++
T Consensus 231 ~~g--~~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~pp~ 292 (292)
T 4hl4_A 231 ACH--PLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFPPS 292 (292)
T ss_dssp HSC--TTHHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHSCC-
T ss_pred HcC--CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 988 57999999999999999999887799999999999999999999999999999988763
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=332.17 Aligned_cols=260 Identities=14% Similarity=0.203 Sum_probs=209.7
Q ss_pred HHHHhchhccCCCCCHHHHHHHHHhCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhcHHHHHHHHHHhhcCChHHHh
Q 010980 170 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 249 (496)
Q Consensus 170 ~~W~~~l~~~~~~~~~~~Lr~~l~~~GIP~~~R~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~L~~~~~~~~~~~~~ 249 (496)
+..+.++. +..+|.++||++++++|||+.+|+.||++|+|++|.+++ .|+.+..+++++|.+++++.
T Consensus 27 ~~~~~ll~--~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~--~~~~~l~~kr~eY~~l~~~~--------- 93 (294)
T 3qwl_A 27 KSLEILLK--DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHE--SHAKVMMYRKEQYLDVLHAL--------- 93 (294)
T ss_dssp HHHHHHTT--SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGG--GHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHhc--CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCch--hHHHHHHHHHHHHHHHHHhh---------
Confidence 34545554 678999999996644449999999999999999998865 47899999999999999872
Q ss_pred hhhhhhhhcccccccccccCCCccccCCCCChhHHHHHH--HHHHHhhhcCCCCcccChhhhHHHHHHhcCChHHHHHHH
Q 010980 250 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRD--ILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCF 327 (496)
Q Consensus 250 ~~~~~~e~~~qI~kDV~RT~~~~~~F~~~~~~~~~~L~r--IL~ays~~np~iGY~QGM~~Iaa~lL~v~~dE~~aFw~f 327 (496)
+..++|+.+.++. ..|... -.+.+ ...++ ..+++ .++|||.+||++++.++.+|++|||||
T Consensus 94 ------~~~r~I~~~tP~~----~vfl~~-----~~~~~~~l~~~~-~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f 156 (294)
T 3qwl_A 94 ------KVVRFVSDATPQA----EVYLRM-----YQLESGKLPRSP-SFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWIT 156 (294)
T ss_dssp ------HHTTSCCTTSCHH----HHHHHH-----HHHHHTCCCSST-TSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred ------hhhhhhhccCchH----HHHHHH-----HHcccccccccc-cCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHH
Confidence 2234677644321 111100 00000 01111 11233 256999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcchhhhHHHHHHHHHHHhChhhhhHHhhcCCCcchhHHHHHHHhccccCchHHHHHHHHHHHhhcc
Q 010980 328 VALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYL 407 (496)
Q Consensus 328 ~~Lm~~~~~~f~~~~~gl~~~l~~l~~LL~~~~P~L~~hL~~~~i~~~~f~~~WfltlF~~~~p~~~vlRLWD~~l~~g~ 407 (496)
++||+++..+|..+++|++.. ++.+++.++|+||+||++.++.+.+++.+||+++|+++||++.++||||++|+++
T Consensus 157 ~~Lm~~l~~~f~~~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~- 232 (294)
T 3qwl_A 157 RRFVNQLNTKYRDSLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGS- 232 (294)
T ss_dssp HHHHHHHHTTTTTTGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhhCCChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCC-
Confidence 999999988999999998866 4899999999999999999999887777999999999999999999999999966
Q ss_pred chhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Q 010980 408 SEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE 466 (496)
Q Consensus 408 ~~~fl~~valAiL~~~r~~IL~~~~d~~eil~~L~~lp~~iD~d~ll~~A~~L~~~~~e 466 (496)
..|++++|+|||+.+++.||+.+ ++++++++|+++| ..|++.++..|..|+.....
T Consensus 233 -~~~l~~valAiL~~~r~~Ll~~~-~~~~il~~Lq~lp-~~di~~ll~~A~~l~~~~~~ 288 (294)
T 3qwl_A 233 -CKILVFVAVEILLTFKIKVMALN-SAEKITKFLENIP-QDSSDAIVSKAIDLWHKHCG 288 (294)
T ss_dssp -STHHHHHHHHHHHHTHHHHHHCC-SHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHHC
T ss_pred -chHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHcCC-cccHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999764 5599999999999 78999999999999776533
No 8
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=17.30 E-value=1.7e+02 Score=25.72 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=56.3
Q ss_pred HHHHHhccccCchHHHHHHHHHHHhhccc-------hhHHHH-HHHHHHHHhHHHHhcCCCCHHHHHHHHHhCCCC---C
Q 010980 380 RWVLIQFKREFEYEKTMRLWEVLWTHYLS-------EHLHLY-VCVAILKRYRNKIMGEQMDFDTLLKFINELSGR---I 448 (496)
Q Consensus 380 ~WfltlF~~~~p~~~vlRLWD~~l~~g~~-------~~fl~~-valAiL~~~r~~IL~~~~d~~eil~~L~~lp~~---i 448 (496)
.-++.+|...--++ +=-+|+-+|..... .+-++. +|+|+.+..+...-....-+...+..|..++.. +
T Consensus 37 ~~~i~lFn~g~yfe-aHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GI 115 (161)
T 2ijq_A 37 VHGVRLYNSGEFHE-SHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGV 115 (161)
T ss_dssp HHHHHHHHTTCHHH-HHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGB
T ss_pred HHHHHHHhCCCchH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCc
Confidence 33444555533332 33456666654321 135667 788888776654433222456777778777754 7
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 010980 449 DLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLL 487 (496)
Q Consensus 449 D~d~ll~~A~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~ 487 (496)
|++.|+..+..+.. -|+ +.++|.|+++...+
T Consensus 116 Dv~~L~~~~~~~l~-dp~-------~~~~P~l~~dg~~~ 146 (161)
T 2ijq_A 116 DLLDVRTTVTNALS-DPS-------ALHGWQIRLDGEYP 146 (161)
T ss_dssp CHHHHHHHHHHHHH-CGG-------GGTTCCCCBTTBCC
T ss_pred CHHHHHHHHHHHhh-CCc-------cCCCCeEEecCCCC
Confidence 99999998888754 111 12266676654333
No 9
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=15.46 E-value=8.1e+02 Score=24.86 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=40.5
Q ss_pred hhhhHHhhcCCCcchhHHHHHHHhccccCchHHHHHHHHHHHhhccchhHH
Q 010980 362 PLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLH 412 (496)
Q Consensus 362 ~L~~hL~~~~i~~~~f~~~WfltlF~~~~p~~~vlRLWD~~l~~g~~~~fl 412 (496)
++++.+.+.|+.|...++.-++..|.+.=.++.+.++|+.+...|...+..
T Consensus 126 ~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 126 DMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 345566778899999999999999998888999999999988777544433
No 10
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=14.78 E-value=1.2e+02 Score=27.67 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=24.5
Q ss_pred hhHHHHHHHhccccCchHHHHHHHHHHHh
Q 010980 376 FFCFRWVLIQFKREFEYEKTMRLWEVLWT 404 (496)
Q Consensus 376 ~f~~~WfltlF~~~~p~~~vlRLWD~~l~ 404 (496)
-|+|.+..--=.+.++++.++..|+++|.
T Consensus 102 ~ftF~~~re~gqk~L~~e~Ai~~W~lll~ 130 (199)
T 3kev_A 102 QFVFQYSKEPSQRSLPAETAMALWDVLLR 130 (199)
T ss_dssp HHHHHHHSCTTCSSBCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCcCcCCCCHHHHHHHHHHHhC
Confidence 37777776666789999999999999995
Done!