BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010981
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 155/403 (38%), Gaps = 87/403 (21%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSS 134
L GDS Y+ ++ +G+PP++ + +DTGS V + S +FDT
Sbjct: 7 LQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYID---------TYFDTER 57
Query: 135 SSTARIVSCSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILG 194
SST R S + +Y GS T +G
Sbjct: 58 SSTYR-----------------------SKGFDVTVKYTQGSWT------------GFVG 82
Query: 195 ESLI----ANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQ--------LA 242
E L+ +T+ +V + +++ + +GI G L+ S L
Sbjct: 83 EDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLV 142
Query: 243 SRGITPRVFSH------CXXXXXXXXXXXXXXXXXEPS-----IVYSPLVPSKPHYNLNL 291
++ P VFS EPS I Y+P + + +Y + +
Sbjct: 143 TQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTP-IKEEWYYQIEI 201
Query: 292 HGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTM 351
+ + GQ L++D + N + IVDSGTTL L ++ FD V A+ S+ P
Sbjct: 202 LKLEIGGQSLNLDCREY---NADKAIVDSGTTLLRLPQKVFDAVVEAV---ARASLIPEF 255
Query: 352 SKG------KQCYLVSNSVSEIFPQVSLNFEGGAS-----MVLKPEEYLIHLGFYDGAAM 400
S G C+ S + FP++S+ S + + P+ Y+ + G
Sbjct: 256 SDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPM-MGAGLNY 314
Query: 401 WCIGFEKSPG-GVSILGDLVLKDKIFVYDLARQRVGWANYDCS 442
C F SP ++G V++ ++D A++RVG+A C+
Sbjct: 315 ECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 135/384 (35%), Gaps = 98/384 (25%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
YF + +GSPP+ F V DTGS LWV V
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPS-----------------------------VY 55
Query: 143 CSDPLCASEIQTTATQCPSGSNQC-SYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANS 201
C+ P C + + +Q + S S+S +YG GS I+G ++
Sbjct: 56 CTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS------------LSGIIGADQVSVE 103
Query: 202 TALIV---FGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLASRGITPRVFSHCXXXX 258
+V FG S + G + D DGI G G L+V G+TP VF +
Sbjct: 104 GLTVVGQQFGESVTEPGQ-TFVDAEFDGILGLGYPSLAV------GGVTP-VFDNMMAQN 155
Query: 259 XXXXXXXXXXXXXEP--------------------SIVYSPLVPSKPHYNLNLHGITVNG 298
P S+ + P V + ++ + L I V G
Sbjct: 156 LVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVP-VTKQAYWQIALDNIQVGG 214
Query: 299 QLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCY 358
++ S + IVD+GT+L + +AI A P + Y
Sbjct: 215 TVM-------FCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGA------APVDGE----Y 257
Query: 359 LVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFE----KSPGG-VS 413
V + + P V+ G L P Y + L F DG GF+ P G +
Sbjct: 258 AVECANLNVMPDVTFTIN-GVPYTLSPTAYTL-LDFVDGMQFCSSGFQGLDIHPPAGPLW 315
Query: 414 ILGDLVLKDKIFVYDLARQRVGWA 437
ILGD+ ++ V+D RVG A
Sbjct: 316 ILGDVFIRQFYSVFDRGNNRVGLA 339
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 143/361 (39%), Gaps = 80/361 (22%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y+ +V +G+P K+FN+ DTGS LW+ + C+NC G +D + SST +
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSGQTKYDPNQSSTYQ--- 67
Query: 143 CSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANST 202
++ ++S YGDGS SG D + N
Sbjct: 68 --------------------ADGRTWSISYGDGSSASGILAKDNV------------NLG 95
Query: 203 ALIVFGCSTYQTGDLSKTDKAI------DGIFGFG-------QGDLSVISQLASRGITPR 249
L++ G QT +L+K + A DG+ G G +G + + L S+G+ R
Sbjct: 96 GLLIKG----QTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISR 151
Query: 250 VFSHCXXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYN-LNLHGITVNGQLLSIDPSAF 308
S + + + P N GITV+ ++ S
Sbjct: 152 PIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVD--RATVGTSTV 209
Query: 309 AASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIF 368
A+S + I+D+GTTL L I A+V+++ + G Y +S S
Sbjct: 210 ASS--FDGILDTGTTLLILPNN--------IAASVARAYGAS-DNGDGTYTISCDTSAFK 258
Query: 369 PQV-SLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVY 427
P V S+N GAS + P+ + F + GF G +I+GD LK+ V+
Sbjct: 259 PLVFSIN---GASFQVSPDSLV----FEEFQGQCIAGFGYGNWGFAIIGDTFLKNNYVVF 311
Query: 428 D 428
+
Sbjct: 312 N 312
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 190 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 245
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 246 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILP 305
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 306 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 364
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 9 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 38
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 187 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 242
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 243 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILP 302
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 303 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 361
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 6 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 35
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 203 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 258
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V++I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 259 AAVASIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 377
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 22 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 51
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 188 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 243
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 244 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILP 303
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 304 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 362
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 7 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 36
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 191 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 246
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 365
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 10 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 39
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 179 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 234
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 235 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 294
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 295 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 353
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 12 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 41
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 193 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 248
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 249 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 308
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 309 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 367
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 12 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 41
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 196 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 251
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 252 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 311
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 312 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 370
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 15 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 44
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 191 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 246
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 365
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 10 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 39
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 191 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 246
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 365
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 10 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 39
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 190 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 245
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 246 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 305
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 306 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 364
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 9 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 38
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 193 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 248
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 249 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 308
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 309 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 367
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 12 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 41
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 207 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 262
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 381
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 26 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 55
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 192 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 247
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 248 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 307
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 308 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 366
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 11 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 40
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 193 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 248
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 249 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 308
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 309 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 367
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 12 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 41
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 194 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 249
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 250 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 309
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 310 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 368
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 13 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 42
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 207 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 262
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 381
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 26 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 55
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 208 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 263
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 264 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 323
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 324 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 382
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 27 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 56
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 196 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 251
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 252 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 311
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 312 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 370
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 15 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 44
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 191 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 246
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 365
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 10 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 39
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 188 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 243
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 244 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 303
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 304 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 362
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 7 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 36
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 191 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 246
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 365
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 10 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 39
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 205 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 260
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 261 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 320
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 321 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 379
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 24 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 53
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 207 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 262
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 381
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 26 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 55
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 207 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 262
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 381
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 26 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 55
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 208 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 263
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 264 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 323
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 324 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 382
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 27 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 56
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 203 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 258
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 377
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 22 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 51
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 213 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 268
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 269 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 328
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 329 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 387
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 32 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 61
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 207 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 262
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 381
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 26 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 55
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 204 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 259
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 260 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 319
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 320 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 378
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 23 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 52
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 203 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 258
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 377
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 22 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 51
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 206 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 261
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 262 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 321
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 322 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 380
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 25 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 54
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 206 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 261
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 262 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 321
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 322 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 380
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 25 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 54
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 203 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 258
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 377
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 22 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 51
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 227 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 282
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 283 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 342
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 343 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 401
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 46 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 75
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 206 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 261
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 262 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 321
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 322 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 380
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 25 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 54
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 210 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 265
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 266 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 325
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 326 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 384
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 29 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 58
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 203 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 258
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 377
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 22 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 51
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 143/361 (39%), Gaps = 80/361 (22%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y+ +V +G+P K+FN+ DTGS LW+ + C+NC G + +D + SST +
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSRQTKYDPNQSSTYQ--- 67
Query: 143 CSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANST 202
++ ++S YGDGS SG D + N
Sbjct: 68 --------------------ADGRTWSISYGDGSSASGILAKDNV------------NLG 95
Query: 203 ALIVFGCSTYQTGDLSKTDKAI------DGIFGFG-------QGDLSVISQLASRGITPR 249
L++ G QT +L+K + A DG+ G G +G + + L S+G+ R
Sbjct: 96 GLLIKG----QTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISR 151
Query: 250 VFSHCXXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYN-LNLHGITVNGQLLSIDPSAF 308
S + + + P N GITV+ ++ S
Sbjct: 152 PIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVD--RATVGTSTV 209
Query: 309 AASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIF 368
A+S + I+D+GTTL L I A+V+++ + G Y +S S
Sbjct: 210 ASS--FDGILDTGTTLLILPNN--------IAASVARAYGAS-DNGDGTYTISCDTSRFK 258
Query: 369 PQV-SLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVY 427
P V S+N GAS + P+ + F + GF +I+GD LK+ V+
Sbjct: 259 PLVFSIN---GASFQVSPDSLV----FEEFQGQCIAGFGYGNWDFAIIGDTFLKNNYVVF 311
Query: 428 D 428
+
Sbjct: 312 N 312
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 207 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 262
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSCGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 381
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 26 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 55
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 227 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 282
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 283 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 342
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 343 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 401
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 46 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 75
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 249 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 304
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 305 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 364
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 365 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 423
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 68 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 97
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 250 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 305
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 306 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 365
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 366 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 424
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 69 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 98
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 250 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 305
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 306 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 365
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 366 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 424
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 69 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 98
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSGTT L ++ F+
Sbjct: 207 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFE 262
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S + +G ++++ V+D AR+R+G+A C +
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTCMGAVIMEGFYVVFDRARKRIGFAVSACHV 381
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 26 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 55
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+P + + +Y + + + +NGQ L +D + N ++IVDSG T L ++ F+
Sbjct: 207 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGCTNLRLPKKVFE 262
Query: 334 PFVSAITATVSQSVTPT-MSKGKQ--CYLVSNSVSEIFPQVSLNFEGGAS-----MVLKP 385
V +I A S P G+Q C+ + IFP +SL G + + + P
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 386 EEYLIHLGFYDGAAMWCIGFEKSPGGV-SILGDLVLKDKIFVYDLARQRVGWANYDCSL 443
++YL + + C F S +++G ++++ V+D AR+R+G+A C +
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 381
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 75 LIGDSYWLYFTKVKLGSPPKEFNVQIDTGS 104
L G S Y+ ++ +GSPP+ N+ +DTGS
Sbjct: 26 LRGKSGQGYYVEMTVGSPPQTLNILVDTGS 55
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Query: 275 IVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDP 334
+ Y+P+ S+ + G +V G L+ N+ + I D+GTTL L + D
Sbjct: 183 VAYTPVDNSQGFWEFTASGYSVGGGKLN--------RNSIDGIADTGTTLLLLDDNVVDA 234
Query: 335 FVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGF 394
+ A V + +G V E P S +F G+S + P + L
Sbjct: 235 YY----ANVQSAQYDNQQEG-----VVFDCDEDLP--SFSFGVGSSTITIPGDLLNLTPL 283
Query: 395 YDGAAMWCIGFEKSPG-GVSILGDLVLKDKIFVYDLARQRVGWA 437
+G++ G + S G G++I GD+ LK + V+DL +R+GWA
Sbjct: 284 EEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWA 327
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLG 124
Y T V +G+P + + DTGS LWV S P++S G
Sbjct: 17 YITSVSIGTPAQVLPLDFDTGSSDLWVF---SSETPKSSATG 55
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 147/379 (38%), Gaps = 68/379 (17%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y + + +GS ++ V IDTGS LWV S S C +G G NF
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVS-CQ--AGQGQDPNF------------- 57
Query: 143 CSDPLCASEIQTTATQCPSGSNQCS-YSFEYGDGSGTSGSYIYDTLYFDAILGESLIANS 201
C +E + + S N S +S EYGDG+ + G++ DT+ F I
Sbjct: 58 -----CKNEGTYSPSSSSSSQNLNSPFSIEYGDGTTSQGTWYKDTIGFGGI--------- 103
Query: 202 TALIVFGCSTYQTGDLSKTDKAID-GIFGFG------QGDL-SVISQLASRGITPR---- 249
+ Q D++ T ++D GI G G +G+ +V L ++GI +
Sbjct: 104 ------SITKQQFADVTST--SVDQGILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYS 155
Query: 250 VFSHCXXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFA 309
++ + + + V S ++L+ + V GQ ++ D
Sbjct: 156 LYLNSRQATSGQIIFGGVDNAKYSGTLIALPVTSDNELRIHLNTVKVAGQSINADV---- 211
Query: 310 ASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFP 369
+ ++DSGTT+TYL + D +SA + + G YLV ++S
Sbjct: 212 -----DVLLDSGTTITYLQQGVADQVISAFNGQETYD-----ANGNLFYLVDCNLS---G 258
Query: 370 QVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDL 429
V F+ A + + E+ L DG +ILGD L+ VYDL
Sbjct: 259 SVDFAFDKNAKISVPASEFTAPLYTEDGQVYDQCQLLFGTSDYNILGDNFLRSAYIVYDL 318
Query: 430 ARQRVGWANYDCSLSVNVS 448
+ A + + N++
Sbjct: 319 DDNEISLAQVKYTTASNIA 337
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/381 (23%), Positives = 144/381 (37%), Gaps = 94/381 (24%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARI 140
YF ++ +G+PP+ F V DTGS LWV C + C +S F+ S SST
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSR-------FNPSESSTYS- 65
Query: 141 VSCSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIAN 200
+N ++S +YG GS T G + YDTL +I + N
Sbjct: 66 ----------------------TNGQTFSLQYGSGSLT-GFFGYDTLTVQSI----QVPN 98
Query: 201 STALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSV------ISQLASRG-ITPRVFSH 253
FG S + G + DGI G LSV + + G +T VFS
Sbjct: 99 QE----FGLSENEPGT-NFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSV 153
Query: 254 CXXXXXXXXXXXXXXXXXEPSI----VYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFA 309
+ S+ +Y V + ++ + + + GQ ++
Sbjct: 154 YLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQ------ASGW 207
Query: 310 ASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFP 369
S + IVD+GT+L + ++ + A A + G+ +LV+ + + P
Sbjct: 208 CSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDE-------YGQ--FLVNCNSIQNLP 258
Query: 370 QVSLNFEGGASMVLKPEEYLI-------------HLGFYDGAAMWCIGFEKSPGGVSILG 416
++ G L P Y++ +L +G +W ILG
Sbjct: 259 SLTFIIN-GVEFPLPPSSYILSNNGYCTVGVEPTYLSSQNGQPLW------------ILG 305
Query: 417 DLVLKDKIFVYDLARQRVGWA 437
D+ L+ VYDL RVG+A
Sbjct: 306 DVFLRSYYSVYDLGNNRVGFA 326
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 85/380 (22%), Positives = 140/380 (36%), Gaps = 70/380 (18%)
Query: 73 PFLIGDSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDT 132
P + + Y + +GS ++ NV +DTGS LWV + + Q+ + D
Sbjct: 4 PVTLHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVP---------DVNVDCQVTYSDQ 54
Query: 133 SSSSTARIVSCSDPLCASEIQTTATQCPSGSNQCS-----YSFEYGDGSGTSGSYIYDTL 187
++ C + T PSGS+ + YGDGS + G+ DT+
Sbjct: 55 TAD-----------FCKQK----GTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTV 99
Query: 188 YFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL-----SVISQLA 242
F G I N V D + D+ I G+ G+ + +V L
Sbjct: 100 GF----GGVSIKNQVLADV---------DSTSIDQGILGV-GYKTNEAGGSYDNVPVTLK 145
Query: 243 SRGITPR-----VFSHCXXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGITVN 297
+G+ + + S++ P V S ++L + V+
Sbjct: 146 KQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALP-VTSDRELRISLGSVEVS 204
Query: 298 GQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQC 357
G+ ++ D N + ++DSGTT+TYL ++ D + A ++Q S G
Sbjct: 205 GKTINTD--------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQD-----SNGNSF 251
Query: 358 YLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGD 417
Y V ++S V NF A + + E+ L DG +ILGD
Sbjct: 252 YEVDCNLS---GDVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVNDANILGD 308
Query: 418 LVLKDKIFVYDLARQRVGWA 437
L+ VYDL + A
Sbjct: 309 NFLRSAYIVYDLDDNEISLA 328
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 143/380 (37%), Gaps = 75/380 (19%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWV--TCSSC--SNCPQNSGLGIQLNFFDTSSSSTA 138
Y + +GS ++ V IDTGS LWV T + C + Q + Q FD SSSS+A
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 139 RIVSCSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLI 198
+ + NQ +S EYGD + + GS+ DT+ F I
Sbjct: 74 QNL----------------------NQ-DFSIEYGDLTSSQGSFYKDTVGFGGI------ 104
Query: 199 ANSTALIVFGCSTYQTGDLSKT--DKAIDGIFGFGQGDL------SVISQLASRGITPRV 250
Q D++ T D+ I GI GF + +V L +GI +
Sbjct: 105 ---------SIKNQQFADVTTTSVDQGIMGI-GFTADEAGYNLYDNVPVTLKKQGIINKN 154
Query: 251 FSHCXXXXXXXXXXXXXXXXXEPSIVYSPL--VPSKPHYNLNLHGITVNGQLLSIDPSAF 308
+ + L +P L +H L SI+
Sbjct: 155 AYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVH-------LGSINFDGT 207
Query: 309 AASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIF 368
+ S N + ++DSGTT+TY + D F + AT + + C L ++V
Sbjct: 208 SVSTNADVVLDSGTTITYFSQSTADKFARIVGATWDSR--NEIYRLPSCDLSGDAV---- 261
Query: 369 PQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYD 428
NF+ G + + E ++ D + C F S +ILGD L+ VYD
Sbjct: 262 ----FNFDQGVKITVPLSELILK----DSDSSICY-FGISRNDANILGDNFLRRAYIVYD 312
Query: 429 LARQRVGWANYDCSLSVNVS 448
L + + A + S ++S
Sbjct: 313 LDDKTISLAQVKYTSSSDIS 332
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/388 (21%), Positives = 143/388 (36%), Gaps = 65/388 (16%)
Query: 73 PFLIGDSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDT 132
P + + + Y + +GS ++FNV +DTGS LWV +S + C +
Sbjct: 4 PVTLNNEHVSYAADITIGSNKQKFNVIVDTGSSDLWVPDASVT-CDK------------- 49
Query: 133 SSSSTARIVSCSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAI 192
R +D I T + S + + YGDGS + G+ DT+ F
Sbjct: 50 -----PRPGQSADFCKGKGIYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFG-- 102
Query: 193 LGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFG------QGDL-SVISQLASRG 245
G S+ VF D++KT GI G G GD +V L ++G
Sbjct: 103 -GASITKQ-----VFA-------DITKT-SIPQGILGIGYKTNEAAGDYDNVPVTLKNQG 148
Query: 246 ITPR-----VFSHCXXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGITVNGQL 300
+ + + S++ P V S + L+ + G+
Sbjct: 149 VIAKNAYSLYLNSPNAATGQIIFGGVDKAKYSGSLIAVP-VTSDRELRITLNSLKAVGKN 207
Query: 301 LSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLV 360
++ N + ++DSGTT+TYL ++ + A A + +G Y+
Sbjct: 208 IN---------GNIDVLLDSGTTITYLQQDVAQDIIDAFQAELKSD-----GQGHTFYVT 253
Query: 361 SNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVL 420
S V NF+ A + + E+ L + +G +ILGD L
Sbjct: 254 DCQTSGT---VDFNFDNNAKISVPASEFTAPLSYANGQPYPKCQLLLGISDANILGDNFL 310
Query: 421 KDKIFVYDLARQRVGWANYDCSLSVNVS 448
+ VYDL ++ A + + N++
Sbjct: 311 RSAYLVYDLDDDKISLAQVKYTSASNIA 338
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/380 (22%), Positives = 140/380 (36%), Gaps = 70/380 (18%)
Query: 73 PFLIGDSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDT 132
P + + Y + +GS ++ NV +DTGS LWV + + Q+ + D
Sbjct: 4 PVTLHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVP---------DVNIDCQVTYSDQ 54
Query: 133 SSSSTARIVSCSDPLCASEIQTTATQCPSGSNQCS-----YSFEYGDGSGTSGSYIYDTL 187
++ C + T PSGS+ +S YGDGS + G+ DT+
Sbjct: 55 TAD-----------FCKQK----GTYDPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTV 99
Query: 188 YFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL-----SVISQLA 242
F G I N V D + D+ I G+ G+ + +V L
Sbjct: 100 GF----GGVSIKNQVLADV---------DSTSIDQGILGV-GYKTNEAGGSYDNVPVTLK 145
Query: 243 SRGITPR-----VFSHCXXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGITVN 297
+G+ + + S++ P V S ++L + V+
Sbjct: 146 KQGVIAKNAYSLYLNSPDSATGQIIFGGVDNAKYSGSLIALP-VTSDRELRISLGSVEVS 204
Query: 298 GQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQC 357
G+ ++ D N + ++DSGTT+TYL ++ D + A ++Q S G
Sbjct: 205 GKTINTD--------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQD-----SNGNSF 251
Query: 358 YLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGD 417
Y V ++S V NF A + + ++ DG +ILGD
Sbjct: 252 YEVDCNLS---GDVVFNFSKNAKISVPASDFAASTQGDDGQPYDKCQLLFDVNKANILGD 308
Query: 418 LVLKDKIFVYDLARQRVGWA 437
L+ VYDL + A
Sbjct: 309 NFLRSAYIVYDLDDNEISIA 328
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/377 (20%), Positives = 138/377 (36%), Gaps = 87/377 (23%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARI 140
Y+T + LG+PP+ F V +DTGS LWV + C + C +S +D +SS+ +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK-------YDHEASSSYKA 67
Query: 141 VSCS----------------DPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIY 184
D L ++ +++ +F +G G G Y
Sbjct: 68 NGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG-LGY 126
Query: 185 DTLYFDAILGESLIANSTALIVFGCSTYQTGDLSK-TDKAIDGIFGFGQGDLSVISQLAS 243
DT+ D ++ A L+ + GD SK T+ + FG
Sbjct: 127 DTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFG-------------- 172
Query: 244 RGITPRVFSHCXXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGITVNGQLLSI 303
GI F + I + P V K ++ + GI + + +
Sbjct: 173 -GIDESKF--------------------KGDITWLP-VRRKAYWEVKFEGIGLGDEYAEL 210
Query: 304 DPSAFAASNNRETIVDSGTTLTYL---VEEAFDPFVSAITATVSQSVTPTMSKGKQCYLV 360
+ A +D+GT+L L + E + + A + Q Y +
Sbjct: 211 ESHGAA--------IDTGTSLITLPSGLAEMINAEIGAKKGSTGQ------------YTL 250
Query: 361 SNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVL 420
+ + P + NF G + + P +Y + + +A+ + F + G ++I+GD L
Sbjct: 251 DCNTRDNLPDLIFNFN-GYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFL 309
Query: 421 KDKIFVYDLARQRVGWA 437
+ +YDL VG A
Sbjct: 310 RKYYSIYDLGNNAVGLA 326
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/374 (20%), Positives = 137/374 (36%), Gaps = 81/374 (21%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARI 140
Y+T + LG+PP+ F V +DTGS LWV + C + C +S +D +SS+ +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK-------YDHEASSSYKA 67
Query: 141 VSCS----------------DPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIY 184
D L ++ +++ +F +G G G Y
Sbjct: 68 NGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG-LGY 126
Query: 185 DTLYFDAILGESLIANSTALIVFGCSTYQTGDLSK-TDKAIDGIFGFGQGDLSVISQLAS 243
DT+ D ++ A L+ + GD SK T+ + FG
Sbjct: 127 DTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFG-------------- 172
Query: 244 RGITPRVFSHCXXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGITVNGQLLSI 303
GI F + I + P V K ++ + GI + + +
Sbjct: 173 -GIDESKF--------------------KGDITWLP-VRRKAYWEVKFEGIGLGDEYAEL 210
Query: 304 DPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNS 363
+ A +D+GT+L L S + ++ + Q L N+
Sbjct: 211 ESHGAA--------IDTGTSLITL--------PSGLAEMINAEIGAKKGWTGQYTLDCNT 254
Query: 364 VSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDK 423
+ P + NF G + + P +Y + + +A+ + F + G ++I+GD L+
Sbjct: 255 RDNL-PDLIFNFN-GYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKY 312
Query: 424 IFVYDLARQRVGWA 437
+YDL VG A
Sbjct: 313 YSIYDLGNNAVGLA 326
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 137/368 (37%), Gaps = 76/368 (20%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSC-SNCPQNSGLGIQLNFFDTSSSSTARIV 141
YF K+ +G+PP+EF V DTGS LWV C SN +N + FD SST R
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNH------HRFDPRKSSTFR-- 64
Query: 142 SCSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANS 201
+ PL S YG GS G YDT+ I+ N
Sbjct: 65 NLGKPL---------------------SIHYGTGS-MEGFLGYDTVTVSNIVD----PNQ 98
Query: 202 TALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLS------VISQLASRGITPR----VF 251
T G ST Q G++ T DGI G L+ V + R + R V+
Sbjct: 99 TV----GLSTEQPGEVF-TYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVY 153
Query: 252 SHCXXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAAS 311
S+ + P V + ++ + +T+NG A A
Sbjct: 154 MDRNGQGSMLTLGAIDPSYYTGSLHWVP-VTLQQYWQFTVDSVTING-------VAVACV 205
Query: 312 NNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQV 371
+ I+D+GT++ + AI AT ++ ++ G + + + +F
Sbjct: 206 GGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEFDVNCGN----LRSMPTVVFEIN 261
Query: 372 SLNFEGGASMVLKPEEYLIHLGFY--DGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDL 429
++ S ++ GF + + +W ILGD+ +++ V+D
Sbjct: 262 GRDYPLSPSAYTSKDQGFCTSGFQGDNNSELW------------ILGDVFIREYYSVFDR 309
Query: 430 ARQRVGWA 437
A RVG A
Sbjct: 310 ANNRVGLA 317
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/374 (20%), Positives = 137/374 (36%), Gaps = 81/374 (21%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARI 140
Y+T + LG+PP+ F V +DTGS LWV + C + C +S +D +SS+ +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK-------YDHEASSSYKA 67
Query: 141 VSCS----------------DPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIY 184
D L ++ +++ +F +G G G Y
Sbjct: 68 NGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG-LGY 126
Query: 185 DTLYFDAILGESLIANSTALIVFGCSTYQTGDLSK-TDKAIDGIFGFGQGDLSVISQLAS 243
DT+ D ++ A L+ + GD SK T+ + FG
Sbjct: 127 DTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFG-------------- 172
Query: 244 RGITPRVFSHCXXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGITVNGQLLSI 303
GI F + I + P V K ++ + GI + + +
Sbjct: 173 -GIDESKF--------------------KGDITWLP-VRRKAYWEVKFEGIGLGDEYAEL 210
Query: 304 DPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNS 363
+ A +D+GT+L L S + ++ + Q L N+
Sbjct: 211 ESHGAA--------IDTGTSLITL--------PSGLAEMINAEIGAKKGWTGQYTLDCNT 254
Query: 364 VSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDK 423
+ P + NF G + + P +Y + + +A+ + F + G ++I+GD L+
Sbjct: 255 RDNL-PDLIFNFN-GYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKY 312
Query: 424 IFVYDLARQRVGWA 437
+YD+ VG A
Sbjct: 313 YSIYDIGNNAVGLA 326
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 43 LRARDRVRHSRILQGVVGGVVEFPVQGSSDPFLI---GDSYWL-------YFTKVKLGSP 92
L+ R R+SR+ G+ GG E P+ ++P GD L YF ++ +G+P
Sbjct: 5 LKKRPIDRNSRVATGLSGGE-EQPLLSGANPLRSEEEGDIVALKNYMNAQYFGEIGVGTP 63
Query: 93 PKEFNVQIDTGSDILWVTCSSC 114
P++F V DTGS LWV + C
Sbjct: 64 PQKFTVIFDTGSSNLWVPSAKC 85
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 377 GGASMVLKPEEYLIHLGFYDGAAMWCI-GFEK-----SPGGVSILGDLVLKDKIFVYDLA 430
GG LKPEEY++ +G +GAA CI GF G + ILGD+ + V+D
Sbjct: 411 GGKKFALKPEEYILKVG--EGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYG 468
Query: 431 RQRVGWAN 438
+ R+G+A
Sbjct: 469 KLRIGFAK 476
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 127/334 (38%), Gaps = 50/334 (14%)
Query: 141 VSCSDPLCASEIQTTATQCPS---GSNQ-----CSYSFEYGDGSGTSGSYIYDTLYFDAI 192
++CS P C A CP+ GS++ +Y G+ +GS + +
Sbjct: 50 IACSSPTCLLANAYPAPGCPAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFHTRFAANTT 109
Query: 193 LGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLASRGITPRVFS 252
G ++ ++ C+ + L+ + G+ G L++ SQ+AS P F
Sbjct: 110 DGNKPVSEVNVRVLAACAPSKL--LASLPRGSTGVAGLAGSGLALPSQVASAQKVPNKFL 167
Query: 253 HCXXXXXXXXXXXXXXXXXEP----SIVYSPLVPS--KPHYNLNLHGITVNGQLLSIDPS 306
C P S+ Y+PLV P + ++ I V + I
Sbjct: 168 LCLPTGGPGVAIFGGGPLPWPQFTQSMDYTPLVAKGGSPAHYISARSIKVENTRVPISER 227
Query: 307 AFAASNNRETIVDSGTTLTY--LVEEAFDPFVSAIT----------ATVSQSVTPTMSKG 354
A A V T L Y L + + P V A T A V+++V P ++
Sbjct: 228 ALATGG-----VMLSTRLPYVLLRRDVYRPLVDAFTKALAAQPANGAPVARAVKP-VAPF 281
Query: 355 KQCY----LVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPG 410
+ CY L +N P V L +GG+ + + ++ + G A C+ F + G
Sbjct: 282 ELCYDTKTLGNNPGGYWVPNVLLELDGGSDWAMTGKNSMVDV--KPGTA--CVAFVEMKG 337
Query: 411 --------GVSILGDLVLKDKIFVYDLARQRVGW 436
ILG ++D + +D+ ++R+G+
Sbjct: 338 VDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGF 371
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 69 GSSDPFLIGDSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN---CPQNSGLGI 125
GS+ L D YF ++ +G+PP++F V DTGS +LWV S C N C +S
Sbjct: 1 GSAVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHS---- 56
Query: 126 QLNFFDTSSSSTAR 139
+++S SST +
Sbjct: 57 ---MYESSDSSTYK 67
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 134/367 (36%), Gaps = 66/367 (17%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y +KV +GS ++ V IDTGS WV S + C + F +SSSS +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWV-VDSNAQCGKGVDCKSSGTFTPSSSSSYKNL-- 70
Query: 143 CSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANST 202
+++ YGDGS + G++ DT+ I G S+
Sbjct: 71 ----------------------GAAFTIRYGDGSTSQGTWGKDTV---TINGVSITGQ-- 103
Query: 203 ALIVFGCSTYQTGDLSKTDKAID-GIFGFGQGDLSVISQLASRGITPR-------VFSHC 254
Q D+++T ++D GI G G + + R TP +
Sbjct: 104 ----------QIADVTQT--SVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQG 151
Query: 255 XXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGIT----VNGQLLSIDPSAFAA 310
+I++ + +K L +T + L S++ +
Sbjct: 152 KIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSF 211
Query: 311 SNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQ 370
S ++DSGTTLTY + A + Q +++ + Y + +
Sbjct: 212 SFGDGALLDSGTTLTYFPSDFAAQLADKAGARLVQ-----VARDQYLYFIDCNTDTSGTT 266
Query: 371 VSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLA 430
V NF GA + + EY+ G DG +W I P +ILGD L+ +Y+L
Sbjct: 267 V-FNFGNGAKITVPNTEYVYQNG--DGTCLWGI----QPSDDTILGDNFLRHAYLLYNLD 319
Query: 431 RQRVGWA 437
+ A
Sbjct: 320 ANTISIA 326
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 133/370 (35%), Gaps = 75/370 (20%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
YF + +G+P ++F V DTGS LWV CS+ ++
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSD-----PLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESL 197
CSD P +S + T+ + S YG GS T G YDT+ I
Sbjct: 50 CSDHNQFNPDDSSTFEATSQEL---------SITYGTGSMT-GILGYDTVQVGGI----- 94
Query: 198 IANSTALIVFGCSTYQTGDLSKTDKAIDGIFGF------GQGDLSVISQLASRGITPRVF 251
S +FG S + G DGI G G V L +G+ +
Sbjct: 95 ---SDTNQIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 252 SHCXXXXXXXXXXXXXXXXXEPSIVYSPL----VPSKPHYNLNLHGITVNGQLLSIDPSA 307
+ S L V + ++ + L IT++G+ +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETI------ 204
Query: 308 FAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEI 367
A S + IVD+GT+L A S I A+ + S G+ ++S S +
Sbjct: 205 -ACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN-------SDGEM--VISCSSIDS 254
Query: 368 FPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVY 427
P + + G L P Y++ + + S G + ILGD+ ++ V+
Sbjct: 255 LPDIVFTID-GVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVF 313
Query: 428 DLARQRVGWA 437
D A +VG A
Sbjct: 314 DRANNKVGLA 323
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 133/370 (35%), Gaps = 75/370 (20%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
YF + +G+P ++F V DTGS LWV CS+ ++
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 93
Query: 143 CSD-----PLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESL 197
CSD P +S + T+ + S YG GS T G YDT+ I
Sbjct: 94 CSDHNQFNPDDSSTFEATSQEL---------SITYGTGSMT-GILGYDTVQVGGI----- 138
Query: 198 IANSTALIVFGCSTYQTGDLSKTDKAIDGIFGF------GQGDLSVISQLASRGITPRVF 251
S +FG S + G DGI G G V L +G+ +
Sbjct: 139 ---SDTNQIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 194
Query: 252 SHCXXXXXXXXXXXXXXXXXEPSIVYSPL----VPSKPHYNLNLHGITVNGQLLSIDPSA 307
+ S L V + ++ + L IT++G+ +
Sbjct: 195 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETI------ 248
Query: 308 FAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEI 367
A S + IVD+GT+L A S I A+ + S G+ ++S S +
Sbjct: 249 -ACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN-------SDGEM--VISCSSIDS 298
Query: 368 FPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVY 427
P + + G L P Y++ + + S G + ILGD+ ++ V+
Sbjct: 299 LPDIVFTID-GVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVF 357
Query: 428 DLARQRVGWA 437
D A +VG A
Sbjct: 358 DRANNKVGLA 367
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 132/370 (35%), Gaps = 75/370 (20%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
YF + +G+P ++F V DTGS LWV CS+ ++
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSD-----PLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESL 197
CSD P +S + T + S YG GS T G YDT+ I
Sbjct: 50 CSDHNQFNPDDSSTFEATXQEL---------SITYGTGSMT-GILGYDTVQVGGI----- 94
Query: 198 IANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFG------QGDLSVISQLASRGITPRVF 251
S +FG S + G DGI G G V L +G+ +
Sbjct: 95 ---SDTNQIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 252 SHCXXXXXXXXXXXXXXXXXEPSIVYSPL----VPSKPHYNLNLHGITVNGQLLSIDPSA 307
+ S L V + ++ + L IT++G+ +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETI------ 204
Query: 308 FAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEI 367
A S + IVD+GT+L A S I A+ + S G+ ++S S +
Sbjct: 205 -ACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN-------SDGEM--VISCSSIDS 254
Query: 368 FPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVY 427
P + +G L P Y++ + + S G + ILGD+ ++ V+
Sbjct: 255 LPDIVFTIDG-VQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVF 313
Query: 428 DLARQRVGWA 437
D A +VG A
Sbjct: 314 DRANNKVGLA 323
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 132/370 (35%), Gaps = 75/370 (20%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
YF + +G+P ++F V DTGS LWV CS+ ++
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSD-----PLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESL 197
CSD P +S + T+ + S YG GS T G YDT+ I
Sbjct: 50 CSDHNQFNPDDSSTFEATSQEL---------SITYGTGSMT-GILGYDTVQVGGI----- 94
Query: 198 IANSTALIVFGCSTYQTGDLSKTDKAIDGIFGF------GQGDLSVISQLASRGITPRVF 251
S +FG S + G DGI G G V L +G+ +
Sbjct: 95 ---SDTNQIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 252 SHCXXXXXXXXXXXXXXXXXEPSIVYSPL----VPSKPHYNLNLHGITVNGQLLSIDPSA 307
+ S L V + ++ + L IT++G+ +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETI------ 204
Query: 308 FAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEI 367
A S + IVD+GT+L A S I A+ + S G+ ++S S +
Sbjct: 205 -ACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN-------SDGEM--VISCSSIDS 254
Query: 368 FPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVY 427
P + G L P Y++ + + S G + ILGD+ ++ V+
Sbjct: 255 LPDIVFTIN-GVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVF 313
Query: 428 DLARQRVGWA 437
D A +VG A
Sbjct: 314 DRANNKVGLA 323
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 132/370 (35%), Gaps = 75/370 (20%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
YF + +G+P ++F V DTGS LWV CS+ ++
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 93
Query: 143 CSD-----PLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESL 197
CSD P +S + T + S YG GS T G YDT+ I
Sbjct: 94 CSDHNQFNPDDSSTFEATXQEL---------SITYGTGSMT-GILGYDTVQVGGI----- 138
Query: 198 IANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFG------QGDLSVISQLASRGITPRVF 251
S +FG S + G DGI G G V L +G+ +
Sbjct: 139 ---SDTNQIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 194
Query: 252 SHCXXXXXXXXXXXXXXXXXEPSIVYSPL----VPSKPHYNLNLHGITVNGQLLSIDPSA 307
+ S L V + ++ + L IT++G+ +
Sbjct: 195 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETI------ 248
Query: 308 FAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEI 367
A S + IVD+GT+L A S I A+ + S G+ ++S S +
Sbjct: 249 -ACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN-------SDGEM--VISCSSIDS 298
Query: 368 FPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVY 427
P + +G L P Y++ + + S G + ILGD+ ++ V+
Sbjct: 299 LPDIVFTIDG-VQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVF 357
Query: 428 DLARQRVGWA 437
D A +VG A
Sbjct: 358 DRANNKVGLA 367
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 131/370 (35%), Gaps = 75/370 (20%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
YF + +G+P ++F V DTGS LWV CS+ ++
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSD-----PLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESL 197
CSD P +S + T + S YG GS T G YDT+ I
Sbjct: 50 CSDHNQFNPDDSSTFEATXQEL---------SITYGTGSMT-GILGYDTVQVGGI----- 94
Query: 198 IANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFG------QGDLSVISQLASRGITPRVF 251
S +FG S + G DGI G G V L +G+ +
Sbjct: 95 ---SDTNQIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 252 SHCXXXXXXXXXXXXXXXXXEPSIVYSPL----VPSKPHYNLNLHGITVNGQLLSIDPSA 307
+ S L V + ++ + L IT++G+ +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETI------ 204
Query: 308 FAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEI 367
A S + IVD+GT+L A S I A+ + S G+ ++S S +
Sbjct: 205 -ACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN-------SDGEM--VISCSSIDS 254
Query: 368 FPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVY 427
P + G L P Y++ + + S G + ILGD+ ++ V+
Sbjct: 255 LPDIVFTING-VQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVF 313
Query: 428 DLARQRVGWA 437
D A +VG A
Sbjct: 314 DRANNKVGLA 323
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 131/370 (35%), Gaps = 75/370 (20%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
YF + +G+P ++F V DTGS LWV CS+ ++
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSD-----PLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESL 197
CSD P +S + T+ + S YG GS T G YDT+ I
Sbjct: 50 CSDHNQFNPDDSSTFEATSQEL---------SITYGTGSMT-GILGYDTVQVGGI----- 94
Query: 198 IANSTALIVFGCSTYQTGDLSKTDKAIDGIFGF------GQGDLSVISQLASRGITPRVF 251
S +FG S + G DGI G G V L +G+ +
Sbjct: 95 ---SDTNQIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 252 SHCXXXXXXXXXXXXXXXXXEPSIVYSPL----VPSKPHYNLNLHGITVNGQLLSIDPSA 307
+ S L V + ++ + L IT++G+ +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETI------ 204
Query: 308 FAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEI 367
A S + IVD+GT+L A S I A+ + S G+ ++S S
Sbjct: 205 -ACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN-------SDGEM--VISCSSIAS 254
Query: 368 FPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVY 427
P + G L P Y++ + + S G + ILGD+ ++ V+
Sbjct: 255 LPDIVFTIN-GVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVF 313
Query: 428 DLARQRVGWA 437
D A +VG A
Sbjct: 314 DRANNKVGLA 323
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 129/374 (34%), Gaps = 77/374 (20%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y+ ++ +G+PP+ F V DTGS LWV + CS G+
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGI------------------- 57
Query: 143 CSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANST 202
+ ++ N ++ YG G G D++ I T
Sbjct: 58 -------HSLYESSDSSSYMENGDDFTIHYGSGR-VKGFLSQDSVTVGGITVTQTFGEVT 109
Query: 203 ALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLASRGITPRVFSHCXXXXXXXX 262
L + Q DG+ G G A G+TP VF H
Sbjct: 110 QLPLIPFMLAQ----------FDGVLGMG------FPAQAVGGVTP-VFDHILSQGVLKE 152
Query: 263 XXXXXXXXXEPSIVYSPLV--PSKP-HYNLNLH----------GITVNGQLLSIDPSAFA 309
P ++ +V S P HY + H IT+ G +S+ S
Sbjct: 153 KVFSVYYNRGPHLLGGEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKG--VSVGSSTLL 210
Query: 310 ASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQC--YLVSNSVSEI 367
E +VD+G++ F+SA T+++ + +K K+ Y+VS S
Sbjct: 211 CEEGCEVVVDTGSS-----------FISAPTSSLKLIMQALGAKEKRLHEYVVSCSQVPT 259
Query: 368 FPQVSLNFEGGASMVLKPEEYLIHLGFYDG----AAMWCIGFEKSPGGVSILGDLVLKDK 423
P +S N GG + L +Y++ A+ + G V +LG ++
Sbjct: 260 LPDISFNL-GGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKF 318
Query: 424 IFVYDLARQRVGWA 437
+D R+G+A
Sbjct: 319 YTEFDRHNNRIGFA 332
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSC-SNCPQNSGLGIQLNFFDTSSSST 137
YF K+ LG+PP+EF V DTGS WV C SN +N FD SST
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNH------QRFDPRKSST 65
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSC-SNCPQNSGLGIQLNFFDTSSSST 137
YF K+ LG+PP+EF V DTGS WV C SN +N FD SST
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNH------QRFDPRKSST 65
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTAR 139
Y+ ++ +G+PP+ F V DTGS +WV S CS + FD S SS+ +
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSSYK 66
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTAR 139
Y+ ++ +G+PP+ F V DTGS +WV S CS + FD S SS+ +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSSYK 73
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTAR 139
Y+ ++ +G+PP+ F V DTGS +WV S CS + FD S SS+ +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSSYK 73
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTAR 139
Y+ ++ +G+PP+ F V DTGS +WV S CS + FD S SS+ +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSSYK 73
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTAR 139
Y+ ++ +G+PP+ F V DTGS +WV S CS + FD S SS+ +
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSSYK 70
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTAR 139
Y+ ++ +G+PP+ F V DTGS +WV S CS + FD S SS+ +
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSSYK 69
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 130/366 (35%), Gaps = 67/366 (18%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARI 140
YF + +G+P ++F V DTGS LWV CS+ C + N F+ SST +
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNH-------NRFNPEDSSTYQ- 65
Query: 141 VSCSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIAN 200
S + S YG GS T G YDT+ I
Sbjct: 66 ----------------------STSETVSITYGTGSMT-GILGYDTVQVGGI-------- 94
Query: 201 STALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLASRGITP---RVFSHCXXX 257
S +FG S + G DGI G +S S G TP +++
Sbjct: 95 SDTNQIFGLSETEPGSFLYY-APFDGILGLAYPSIS------SSGATPVFDNIWNQGLVS 147
Query: 258 XXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGITVNGQL------LSIDPSAFAAS 311
+++ + S +LN +TV G ++++ A A +
Sbjct: 148 QDLFSVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACA 207
Query: 312 NNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQV 371
+ IVD+GT+L S I A+ + S G +VS S P +
Sbjct: 208 EGCQAIVDTGTSLLTGPTSPIANIQSDIGASEN-------SDGDM--VVSCSAISSLPDI 258
Query: 372 SLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLAR 431
G + P Y++ + + G + ILGD+ ++ V+D A
Sbjct: 259 VFTIN-GVQYPVPPSAYILQSEGSCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRAN 317
Query: 432 QRVGWA 437
+VG A
Sbjct: 318 NQVGLA 323
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTAR 139
Y+ ++ +G+PP+ F V DTGS +WV S CS + FD S SS+ +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSSYK 73
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTAR 139
Y+ ++ +G+PP+ F V DTGS +WV S CS + FD S SS+ +
Sbjct: 63 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSSYK 116
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS 115
Y+ + +G+PP+ F V DTGS LWV+ S CS
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS 46
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 34/171 (19%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
SI + P+ K ++ + L GITVNGQ AA + IVD+GT+ A
Sbjct: 178 SIHWIPVTAEK-YWQVALDGITVNGQT--------AACEGCQAIVDTGTSKIVAPVSALA 228
Query: 334 PFVSAITATVSQSVTPTMSKGKQCYLVSNSVS-EIFPQVSLNFEGGASMVLKPEEYLIHL 392
+ I A+ +Q ++ N S + P ++ G L P Y+
Sbjct: 229 NIMKDIGASENQG-----------EMMGNCASVQSLPDITFTING-VKQPLPPSAYI--- 273
Query: 393 GFYDGAAMWC---IGFEKSPGGVS---ILGDLVLKDKIFVYDLARQRVGWA 437
+G +C +G P S I GD+ L++ +YD +VG+A
Sbjct: 274 ---EGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFA 321
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 89/372 (23%), Positives = 136/372 (36%), Gaps = 79/372 (21%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARI 140
YF + +G+P ++F V DTGS LWV CS+ C + N F+ SST +
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNH-------NRFNPEDSSTYQ- 65
Query: 141 VSCSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIAN 200
S + S YG GS T G YDT+ I
Sbjct: 66 ----------------------STSETVSITYGTGSMT-GILGYDTVQVGGI-------- 94
Query: 201 STALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLASRGITP---RVFSHCXXX 257
S +FG S + G DGI G +S S G TP +++
Sbjct: 95 SDTNQIFGLSETEPGSFLYY-APFDGILGLAYPSIS------SSGATPVFDNIWNQGLVS 147
Query: 258 XXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGITVNGQL------LSIDPSAFAAS 311
+++ + S +LN +TV G ++++ A A +
Sbjct: 148 QDLFSVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACA 207
Query: 312 NNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQV 371
+ IVD+GT+L S I A+ + S G +VS S P +
Sbjct: 208 EGCQAIVDTGTSLLTGPTSPIANIQSDIGASEN-------SDGDM--VVSCSAISSLPDI 258
Query: 372 SLNFEGGASMVLKPEEYLIHLGFYDGAAMWCI-GFE-----KSPGGVSILGDLVLKDKIF 425
G + P Y++ +G+ CI GF+ G + ILGD+ ++
Sbjct: 259 VFTIN-GVQYPVPPSAYILQ---SEGS---CISGFQGMNVPTESGELWILGDVFIRQYFT 311
Query: 426 VYDLARQRVGWA 437
V+D A +VG A
Sbjct: 312 VFDRANNQVGLA 323
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 68/336 (20%), Positives = 125/336 (37%), Gaps = 50/336 (14%)
Query: 141 VSCSDPLCASEIQTTATQCPS---GSNQ-----CSYSFEYGDGSGTSGSYIYDTLYFDAI 192
+ CS P C A CP+ GS++ +Y + G+ +GS + +
Sbjct: 48 IPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTT 107
Query: 193 LGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLASRGITPRVFS 252
G ++ ++ C+ + L+ + G+ G L++ +Q+AS F
Sbjct: 108 DGSKPVSKVNVGVLAACAPSKL--LASLPRGSTGVAGLANSGLALPAQVASAQKVANRFL 165
Query: 253 HCXXXXXXXXXXXXXXXXXEP----SIVYSPLVPS--KPHYNLNLHGITVNGQLLSIDPS 306
C P S+ Y+PLV P + ++ I V + +
Sbjct: 166 LCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEG 225
Query: 307 AFAASNNRETIVDSGTTLTY--LVEEAFDPFVSAIT----------ATVSQSVTPTMSKG 354
A A V T L Y L + + P + A T A V+++V G
Sbjct: 226 ALATGG-----VMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFG 280
Query: 355 KQCY----LVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPG 410
CY L +N P V L +GG+ + + ++ + G A C+ F + G
Sbjct: 281 -VCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDV--KQGTA--CVAFVEMKG 335
Query: 411 GVS--------ILGDLVLKDKIFVYDLARQRVGWAN 438
+ ILG ++D + +D+ ++R+G++
Sbjct: 336 VAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 84/409 (20%), Positives = 147/409 (35%), Gaps = 88/409 (21%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y T + +P N+ +D G LWV +C QN SST R V
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWV------DCDQN------------YVSSTYRPVR 63
Query: 143 CSDPLCASEIQTTATQCPSG------SNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGES 196
C C+ C +G +N C E + +G + + D + ES
Sbjct: 64 CRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAE----DVVSVES 119
Query: 197 LIANSTALIV------FGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLASRGITPRV 250
+S+ +V F C+ T L + G+ G G+ +++ SQ AS R
Sbjct: 120 TDGSSSGRVVTVPRFIFSCA--PTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRK 177
Query: 251 FSHCXXXXXXXXXXXX----------XXXXXEPSIVYSPLV--------------PSKPH 286
F+ C + ++ Y+PL+ PS +
Sbjct: 178 FAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEY 237
Query: 287 Y------NLNLHGITVNGQLLSIDPSAFAASN----NRETIVDSGTTLTYLVEEAFDPFV 336
+ +N + +N LLSI + + N T+++ T++ V EAF
Sbjct: 238 FIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLE--TSIYKAVTEAFIKES 295
Query: 337 SAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEG--------GASMVLKPEEY 388
+A T SV P + ++S + P + L + G++ ++ +
Sbjct: 296 AARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN 355
Query: 389 LIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWA 437
++ LG DG + ++G L+D + +DLA RVG++
Sbjct: 356 VVCLGVVDGGSNLRTSI--------VIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 84/409 (20%), Positives = 147/409 (35%), Gaps = 88/409 (21%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y T + +P N+ +D G LWV +C QN SST R V
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWV------DCDQN------------YVSSTYRPVR 63
Query: 143 CSDPLCASEIQTTATQCPSG------SNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGES 196
C C+ C +G +N C E + +G + + D + ES
Sbjct: 64 CRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAE----DVVSVES 119
Query: 197 LIANSTALIV------FGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLASRGITPRV 250
+S+ +V F C+ T L + G+ G G+ +++ SQ AS R
Sbjct: 120 TDGSSSGRVVTVPRFIFSCA--PTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRK 177
Query: 251 FSHCXXXXXXXXXXXX----------XXXXXEPSIVYSPLV--------------PSKPH 286
F+ C + ++ Y+PL+ PS +
Sbjct: 178 FAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEY 237
Query: 287 Y------NLNLHGITVNGQLLSIDPSAFAASN----NRETIVDSGTTLTYLVEEAFDPFV 336
+ +N + +N LLSI + + N T+++ T++ V EAF
Sbjct: 238 FIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLE--TSIYKAVTEAFIKES 295
Query: 337 SAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEG--------GASMVLKPEEY 388
+A T SV P + ++S + P + L + G++ ++ +
Sbjct: 296 AARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN 355
Query: 389 LIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWA 437
++ LG DG + ++G L+D + +DLA RVG++
Sbjct: 356 VVCLGVVDGGSNLRTSI--------VIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTAR 139
Y V +G+P ++F + DTGS WV C N G FFD SSSST +
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVG----KRFFDPSSSSTFK 72
>pdb|3IKO|B Chain B, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|E Chain E, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|H Chain H, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
Length = 442
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 332 FDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIH 391
FDP Q + K + C L S VS+I P++ ++ + E+ ++
Sbjct: 131 FDPVSYPYKTDNDQVKMALLKKERHCRLTSWIVSQIGPEIEEKIRNSSNEI---EQIFLY 187
Query: 392 LGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLAR-QRVGWANYDCSLSVNVS 448
L D + E G +S+L + + + DLA Q W+ CS+ N+S
Sbjct: 188 LLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNIS 245
>pdb|3BG0|B Chain B, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|C Chain C, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|F Chain F, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|G Chain G, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|B Chain B, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|C Chain C, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|F Chain F, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|G Chain G, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 442
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 332 FDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIH 391
FDP Q + K + C L S VS+I P++ ++ + E+ ++
Sbjct: 131 FDPVSYPYKTDNDQVKMALLKKERHCRLTSWIVSQIGPEIEEKIRNSSNEI---EQIFLY 187
Query: 392 LGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLAR-QRVGWANYDCSLSVNVS 448
L D + E G +S+L + + + DLA Q W+ CS+ N+S
Sbjct: 188 LLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNIS 245
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 332 FDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIH 391
FDP Q + K + C L S VS+I P++ ++ + E+ ++
Sbjct: 440 FDPVSYPYKTDNDQVKXALLKKERHCRLTSWIVSQIGPEIEEKIRNSSNEI---EQIFLY 496
Query: 392 LGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLAR-QRVGWANYDCSLSVNVS 448
L D + E G +S+L + + + DLA Q W+ CS+ N+S
Sbjct: 497 LLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNIS 554
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 135/367 (36%), Gaps = 64/367 (17%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y + +GS ++ NV +DTGS LW+ S+ P+ G + +F ++ S +
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPK--WRGDKGDFCKSAGSYS----- 66
Query: 143 CSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAI-LGESLIAN- 200
P + Q T+ + +YGDGS G DT+ + + + L AN
Sbjct: 67 ---PASSRTSQNLNTR---------FDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANV 114
Query: 201 ---STALIVFGCSTYQTGDLSKTDK-------AIDGIFGFGQGDLSVISQLASRGITPRV 250
S + G +Q+G+ ++ D GI G L + S AS G +
Sbjct: 115 WSTSARKGILGIG-FQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQI--I 171
Query: 251 FSHCXXXXXXXXXXXXXXXXXEPSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAA 310
F S+V P + S+ + L + V G+ ++D
Sbjct: 172 FGGI------------DKAKYSGSLVDLP-ITSEKKLTVGLRSVNVRGR--NVDA----- 211
Query: 311 SNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQ 370
N ++DSGTT++Y + AI A + S G + Y+ S
Sbjct: 212 --NTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFD-----SAGNKVYVADCKTS---GT 261
Query: 371 VSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLA 430
+ F + + E+L + G +ILGD L+ VY+L
Sbjct: 262 IDFQFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRESEDNILGDNFLRSAYVVYNLD 321
Query: 431 RQRVGWA 437
+++ A
Sbjct: 322 DKKISMA 328
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 83/409 (20%), Positives = 144/409 (35%), Gaps = 67/409 (16%)
Query: 62 VVEFPVQGSSDPFLIGDSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNS 121
+V PVQ S L++ ++ +P + V +D + LWV C Q S
Sbjct: 9 LVVLPVQNDG-------STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQ-----QYS 56
Query: 122 GLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGS 181
Q F ++ S A C AS C S + G G G
Sbjct: 57 SKTYQAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGLMS---TNPITQQTGLGELGE 113
Query: 182 YIYDTLYFDAILGESLIANSTALI---VFGCST---YQTGDLSKTDKAIDGIFGFGQGDL 235
D L A G + + +F C+ Q G + G+ G G +
Sbjct: 114 ---DVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKG----LPRNTQGVAGLGHAPI 166
Query: 236 SVISQLASRGITPRVFSHCXXXXXXXXXXXXXXXXXE-----------PSIVYSPL-VPS 283
S+ +QLAS R F+ C + ++PL +
Sbjct: 167 SLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITL 226
Query: 284 KPHYNLNLHGITVNGQLLSIDP-----SAFAASNNRETIVDSGTTLTYLVEEAFDPFVSA 338
+ YN+ ++ I +N S+ P S S + T++ + T L + + F
Sbjct: 227 QGEYNVRVNSIRINQH--SVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQV 284
Query: 339 ITATV-SQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFE---------GGASMVLKPEEY 388
+ Q+ +++ C+ SN ++ +P V L + G ++++ +
Sbjct: 285 FAQQLPKQAQVKSVAPFGLCF-NSNKINA-YPSVDLVMDKPNGPVWRISGEDLMVQAQPG 342
Query: 389 LIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWA 437
+ LG +G P LG L++ + V+DLAR RVG++
Sbjct: 343 VTCLGVMNGGM--------QPRAEITLGARQLEENLVVFDLARSRVGFS 383
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y T V++G+P + N+ DTGS LWV S + + + S S+TA+++S
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASE------VXQTIYTPSKSTTAKLLS 70
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 311 SNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQ 370
S + + I D+GTTL YL + + ++ S S S G + S ++
Sbjct: 210 STSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSS-----SVGGYVFPCSATLP----- 259
Query: 371 VSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPG-GVSILGDLVLKDKIFVYDL 429
S F G++ ++ P +Y+ G++ G + S G G++I GD+ LK V++
Sbjct: 260 -SFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNG 318
Query: 430 A 430
A
Sbjct: 319 A 319
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y T V++G+P + N+ DTGS LWV S + + + S S+TA+++S
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASE------VXQTIYTPSKSTTAKLLS 70
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 311 SNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQ 370
S + + I D+GTTL YL + + ++ S S S G + S ++
Sbjct: 210 STSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSS-----SVGGYVFPCSATLP----- 259
Query: 371 VSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPG-GVSILGDLVLKDKIFVYDL 429
S F G++ ++ P +Y+ G++ G + S G G++I GD+ LK V++
Sbjct: 260 -SFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNG 318
Query: 430 A 430
A
Sbjct: 319 A 319
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y T V++G+P + N+ DTGS LWV SS + + G I + S S+TA+++S
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWV-FSSETTASEVDGQTI----YTPSKSTTAKLLS 71
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 311 SNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQ 370
S + + I D+GTTL YL + + ++ S S S G + S ++
Sbjct: 211 STSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSS-----SVGGYVFPCSATLP----- 260
Query: 371 VSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPG-GVSILGDLVLKDKIFVYDL 429
S F G++ ++ P +Y+ G++ G + S G G++I GD+ LK V++
Sbjct: 261 -SFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNG 319
Query: 430 AR 431
A
Sbjct: 320 AT 321
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVS 142
Y T V++G+P + N+ DTGS LWV SS + + G I + S S+TA+++S
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWV-FSSETTASEVDGQTI----YTPSKSTTAKLLS 71
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 311 SNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQ 370
S + + I D+GTTL YL + + ++ S S S G + S ++
Sbjct: 211 STSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSS-----SVGGYVFPCSATLP----- 260
Query: 371 VSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPG-GVSILGDLVLKDKIFVYDL 429
S F G++ ++ P +Y+ G++ G + S G G++I GD+ LK V++
Sbjct: 261 -SFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNG 319
Query: 430 A 430
A
Sbjct: 320 A 320
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSC 114
Y+ ++ +G+PP+ F V DTGS LWV C
Sbjct: 15 YYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHC 46
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 66/335 (19%), Positives = 121/335 (36%), Gaps = 48/335 (14%)
Query: 141 VSCSDPLCASEIQTTATQCPS---GSNQ-----CSYSFEYGDGSGTSGSYIYDTLYFDAI 192
+ CS P C A CP+ GS++ +Y + G+ +GS + +
Sbjct: 48 IPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTT 107
Query: 193 LGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLASRGITPRVFS 252
G ++ ++ C+ + L+ + G+ G L++ +Q+AS F
Sbjct: 108 DGSKPVSKVNVGVLAACAPSKL--LASLPRGSTGVAGLANSGLALPAQVASAQKVANRFL 165
Query: 253 HCXXXXXXXXXXXXXXXXXEP----SIVYSPLVPS--KPHYNLNLHGITVNGQLLSIDPS 306
C P S+ Y+PLV P + ++ I V + +
Sbjct: 166 LCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEG 225
Query: 307 AFAASNNRETIVDSGTTLTY--LVEEAFDPFVSAIT-ATVSQSVTPTMSKGKQ------- 356
A A V T L Y L + + P + A T A +Q
Sbjct: 226 ALATGG-----VMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFG 280
Query: 357 -CY----LVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGG 411
CY L +N P V L +GG+ + + ++ + G A C+ F + G
Sbjct: 281 VCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDV--KQGTA--CVAFVEMKGV 336
Query: 412 VS--------ILGDLVLKDKIFVYDLARQRVGWAN 438
+ ILG ++D + +D+ ++R+G++
Sbjct: 337 AAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 362 NSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCI-GFEKSP----GGVSILG 416
N++S + P VS GG L PE+Y++ +G G A CI GF G + ILG
Sbjct: 8 NTLSSM-PNVSFTI-GGKKFGLTPEQYILKVG--KGEATQCISGFTAMDATLLGPLWILG 63
Query: 417 DLVLKDKIFVYDLARQRVGWAN 438
D+ ++ V+D VG+A
Sbjct: 64 DVFMRPYHTVFDYGNLLVGFAE 85
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTAR 139
Y V +G+P ++F + DTGS WV C+ G FFD S+SST +
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVG----SRFFDPSASSTFK 72
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 315 ETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLN 374
E IVD+GT+L + AI A + +G+ Y++ P ++L
Sbjct: 122 EAIVDTGTSLMVGPVDEVRELQKAIGAV-------PLIQGE--YMIPCEKVSTLPAITLK 172
Query: 375 FEGGASMVLKPEEYLIHLGFYDGAAMWCI----GFEKSP--GGVSILGDLVLKDKIFVYD 428
GG L PE+Y + + C+ G + P G + ILGD+ + V+D
Sbjct: 173 L-GGKGYKLSPEDYTLKVS--QAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFD 229
Query: 429 LARQRVGWAN 438
RVG+A
Sbjct: 230 RDNNRVGFAE 239
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 317 IVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFE 376
I D+GTTL L + D + + S S+G + S S+ P S+
Sbjct: 212 IADTGTTLLLLDDSIVDAYYEQVNGASYDS-----SQGGYVFPSSASL----PDFSVTI- 261
Query: 377 GGASMVLKPEEYLIHLGFYD-GAAMWCIGFEKSPG-GVSILGDLVLKDKIFVYDLARQRV 434
G P EY+ F D G G + + G G SI GD+ LK + V+D + R+
Sbjct: 262 -GDYTATVPGEYI---SFADVGNGQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRL 317
Query: 435 GWA 437
G+A
Sbjct: 318 GFA 320
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 317 IVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFE 376
I D+GTTL L +E VSA VS + + G Y+ S S P ++
Sbjct: 212 IADTGTTLILLDDE----IVSAYYEQVSGAQESYEAGG---YVFSCSTD--LPDFTVVI- 261
Query: 377 GGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPG-GVSILGDLVLKDKIFVYDLARQRVG 435
G + P +Y+ + G++ G + + G G+SILGD+ LK + V++ ++G
Sbjct: 262 -GDYKAVVPGKYINYAPVSTGSSTCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLG 320
Query: 436 WA 437
+A
Sbjct: 321 FA 322
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSST 137
+Y+ + ++G ++F DTGS LWV + C+ + N +D++ S T
Sbjct: 22 MYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTK-----NLYDSNKSKT 72
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 25/166 (15%)
Query: 274 SIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 333
S+ Y+ + S+ ++ N+ T Q + + I D+GTTL L +
Sbjct: 178 SLTYTGVDNSQGFWSFNVDSYTAGSQ----------SGDGFSGIADTGTTLLLLDDSVVS 227
Query: 334 PFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLG 393
+ S ++ S + G + S ++ P S++ G + V LI+ G
Sbjct: 228 QYYSQVSGAQQDS-----NAGGYVFDCSTNL----PDFSVSISGYTATVPGS---LINYG 275
Query: 394 FYDGAAMWCIGFEKSPGGV--SILGDLVLKDKIFVYDLARQRVGWA 437
G C+G +S G+ SI GD+ LK + V+D ++G+A
Sbjct: 276 -PSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFA 320
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 317 IVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFE 376
IVD+GTTLT + +AF + A T V+ + T + Y +N S F FE
Sbjct: 210 IVDTGTTLTLIASDAFAKYKKA-TGAVADNNTGLLRLTTAQY--ANLQSLFFTIGGQTFE 266
Query: 377 GGASMVLKPEEYLIHLGFYDGAAMWCIG--FEKSPGGVSILGDLVLKDKIF-VYDLARQR 433
A+ + P +G + +G S G+ + L ++ + VYD +R
Sbjct: 267 LTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKR 326
Query: 434 VG 435
+G
Sbjct: 327 LG 328
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSST 137
+++ + ++G ++F + DTGS LWV C+ +SG I+ N +D+S S +
Sbjct: 63 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN----SSGCSIK-NLYDSSKSKS 113
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSST 137
+++ + ++G ++F + DTGS LWV C+ +SG I+ N +D+S S +
Sbjct: 17 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN----SSGCSIK-NLYDSSKSKS 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,248,888
Number of Sequences: 62578
Number of extensions: 531390
Number of successful extensions: 1604
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1330
Number of HSP's gapped (non-prelim): 206
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)