Query 010981
Match_columns 496
No_of_seqs 282 out of 1676
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 8.8E-60 1.9E-64 483.9 44.5 388 24-443 25-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 1.5E-56 3.2E-61 462.0 37.7 309 76-444 114-451 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 1.4E-55 2.9E-60 450.7 37.2 335 81-442 45-397 (398)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 1.1E-55 2.5E-60 441.1 33.6 300 80-438 4-325 (325)
5 cd05478 pepsin_A Pepsin A, asp 100.0 1.8E-55 3.9E-60 438.0 32.9 298 78-438 6-317 (317)
6 cd05486 Cathespin_E Cathepsin 100.0 1.2E-55 2.5E-60 439.2 31.2 296 83-438 1-316 (316)
7 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.2E-55 9E-60 436.7 32.4 304 81-442 2-326 (326)
8 cd05477 gastricsin Gastricsins 100.0 1.7E-54 3.8E-59 431.3 33.9 297 81-439 2-318 (318)
9 cd05485 Cathepsin_D_like Cathe 100.0 1.9E-54 4E-59 432.3 32.5 301 78-438 7-329 (329)
10 cd05487 renin_like Renin stimu 100.0 3.1E-54 6.7E-59 430.6 32.8 300 79-439 5-326 (326)
11 cd06098 phytepsin Phytepsin, a 100.0 3.4E-54 7.4E-59 428.4 32.2 291 78-438 6-317 (317)
12 cd05488 Proteinase_A_fungi Fun 100.0 5.4E-54 1.2E-58 427.8 32.7 295 80-438 8-320 (320)
13 PTZ00147 plasmepsin-1; Provisi 100.0 1.4E-53 3E-58 436.7 34.4 300 78-440 135-450 (453)
14 cd05472 cnd41_like Chloroplast 100.0 1.6E-53 3.5E-58 420.8 32.4 290 82-441 1-299 (299)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 8.8E-53 1.9E-57 429.9 33.8 300 78-440 134-449 (450)
16 cd05473 beta_secretase_like Be 100.0 2.3E-51 4.9E-56 416.0 34.3 321 82-449 3-355 (364)
17 cd05489 xylanase_inhibitor_I_l 100.0 3.1E-50 6.7E-55 404.6 33.5 324 89-439 2-361 (362)
18 cd05475 nucellin_like Nucellin 100.0 3.5E-50 7.7E-55 391.2 32.0 260 82-441 2-273 (273)
19 cd06097 Aspergillopepsin_like 100.0 4.3E-50 9.3E-55 392.1 28.8 265 83-438 1-278 (278)
20 cd05476 pepsin_A_like_plant Ch 100.0 1.8E-49 3.8E-54 384.9 28.8 254 82-441 1-265 (265)
21 cd05474 SAP_like SAPs, pepsin- 100.0 5.4E-49 1.2E-53 388.1 29.1 272 82-439 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 1.5E-49 3.3E-54 396.0 21.3 298 82-439 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 2.4E-45 5.1E-50 359.7 29.7 269 83-438 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 7E-30 1.5E-34 228.3 17.3 163 83-269 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.3E-23 2.7E-28 187.8 13.7 149 286-438 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1E-21 2.2E-26 163.8 12.9 108 85-230 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.9 3E-05 6.5E-10 62.2 6.8 93 82-232 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.9 0.046 1E-06 46.0 8.1 29 81-111 10-38 (121)
29 PF13650 Asp_protease_2: Aspar 95.4 0.13 2.9E-06 40.2 8.7 26 85-112 1-26 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.0 0.17 3.7E-06 42.7 6.5 27 410-436 98-124 (124)
31 cd05484 retropepsin_like_LTR_2 92.1 0.19 4E-06 39.8 3.7 28 83-112 1-28 (91)
32 cd05479 RP_DDI RP_DDI; retrope 92.0 1.4 3.1E-05 37.1 9.2 29 82-112 16-44 (124)
33 PF08284 RVP_2: Retroviral asp 89.2 4.5 9.7E-05 34.7 9.9 29 410-438 103-131 (135)
34 PF13975 gag-asp_proteas: gag- 86.3 1.3 2.8E-05 33.4 4.2 31 82-114 8-38 (72)
35 PF00077 RVP: Retroviral aspar 83.4 1.7 3.7E-05 34.8 4.1 27 84-112 7-33 (100)
36 PF13650 Asp_protease_2: Aspar 77.5 3.1 6.8E-05 32.1 3.7 29 294-335 3-31 (90)
37 TIGR03698 clan_AA_DTGF clan AA 77.5 3.6 7.8E-05 33.6 4.1 24 411-434 84-107 (107)
38 TIGR02281 clan_AA_DTGA clan AA 77.2 4.8 0.00011 33.7 4.9 36 284-335 9-44 (121)
39 PF13975 gag-asp_proteas: gag- 71.8 7 0.00015 29.3 4.1 29 294-335 13-41 (72)
40 cd05484 retropepsin_like_LTR_2 71.6 5.9 0.00013 31.1 3.9 30 293-335 4-33 (91)
41 cd05482 HIV_retropepsin_like R 71.6 5.4 0.00012 31.3 3.5 25 86-112 2-26 (87)
42 COG3577 Predicted aspartyl pro 68.3 16 0.00035 33.3 6.2 72 80-193 103-174 (215)
43 cd06094 RP_Saci_like RP_Saci_l 67.5 26 0.00057 27.5 6.5 22 312-333 8-29 (89)
44 cd05483 retropepsin_like_bacte 67.0 10 0.00022 29.6 4.4 30 293-335 6-35 (96)
45 PF12384 Peptidase_A2B: Ty3 tr 65.6 22 0.00049 31.2 6.3 23 314-336 46-68 (177)
46 cd06095 RP_RTVL_H_like Retrope 64.4 9 0.0002 29.8 3.5 25 86-112 2-26 (86)
47 cd06095 RP_RTVL_H_like Retrope 63.4 9.1 0.0002 29.7 3.4 29 294-335 3-31 (86)
48 PF11925 DUF3443: Protein of u 56.4 75 0.0016 31.9 9.0 63 171-234 83-150 (370)
49 TIGR03698 clan_AA_DTGF clan AA 50.8 64 0.0014 26.2 6.5 26 85-110 2-32 (107)
50 PF00077 RVP: Retroviral aspar 50.2 14 0.00031 29.3 2.5 25 293-330 9-33 (100)
51 PF09668 Asp_protease: Asparty 45.4 36 0.00078 28.6 4.2 35 82-118 24-58 (124)
52 COG3577 Predicted aspartyl pro 44.3 47 0.001 30.4 5.0 36 283-334 102-137 (215)
53 PF09668 Asp_protease: Asparty 42.5 32 0.00069 29.0 3.5 29 293-334 28-56 (124)
54 PF12384 Peptidase_A2B: Ty3 tr 39.8 39 0.00084 29.8 3.6 28 85-112 35-62 (177)
55 cd05481 retropepsin_like_LTR_1 38.3 35 0.00076 27.0 3.0 22 315-336 12-33 (93)
56 PF03302 VSP: Giardia variant- 35.6 23 0.0005 36.3 2.0 34 462-496 359-392 (397)
57 COG5550 Predicted aspartyl pro 30.0 33 0.00072 28.6 1.7 21 316-336 29-50 (125)
58 PTZ00382 Variant-specific surf 22.9 62 0.0013 25.9 2.0 30 465-495 61-90 (96)
59 PF08284 RVP_2: Retroviral asp 22.3 1.2E+02 0.0026 25.8 3.8 29 82-112 21-49 (135)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=8.8e-60 Score=483.94 Aligned_cols=388 Identities=28% Similarity=0.467 Sum_probs=298.3
Q ss_pred eeeeeeeeCCC-----CCc----ccHHHHHHhhHHHHHHHhhcccCCeeeeeccCCCCCcccCCcceeEEEEEEeCCCCc
Q 010981 24 VVLPLERAFPL-----SQP----VQLSQLRARDRVRHSRILQGVVGGVVEFPVQGSSDPFLIGDSYWLYFTKVKLGSPPK 94 (496)
Q Consensus 24 ~~~pl~~~~p~-----~~~----~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Y~~~i~vGtP~q 94 (496)
.+++|.|+... +.. ..+.+..+|+++|++++.++.. ...++..... ..++.|+++|.||||||
T Consensus 25 ~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~~~-----~~~~~Y~v~i~iGTPpq 96 (431)
T PLN03146 25 FTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDA---SPNDPQSDLI-----SNGGEYLMNISIGTPPV 96 (431)
T ss_pred eEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccc---cCCccccCcc-----cCCccEEEEEEcCCCCc
Confidence 88999876321 111 2244556677777766643211 1112221111 12349999999999999
Q ss_pred EEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCCCCCCCCeeeeEeCC
Q 010981 95 EFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPSGSNQCSYSFEYGD 174 (496)
Q Consensus 95 ~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~~~~~~~~~~Y~~ 174 (496)
++.|++||||+++||+|.+|..|..+. .+.|||++|+|++.++|+++.|..... ...|.. ++.|.|.+.|+|
T Consensus 97 ~~~vi~DTGS~l~Wv~C~~C~~C~~~~-----~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~-~~~c~y~i~Ygd 168 (431)
T PLN03146 97 PILAIADTGSDLIWTQCKPCDDCYKQV-----SPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSD-ENTCTYSYSYGD 168 (431)
T ss_pred eEEEEECCCCCcceEcCCCCcccccCC-----CCcccCCCCCCCcccCCCCcccccCCC--CCCCCC-CCCCeeEEEeCC
Confidence 999999999999999999999998652 478999999999999999999975322 234654 356999999999
Q ss_pred CCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCchHHHHHhcCCCCceeEEe
Q 010981 175 GSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLASRGITPRVFSHC 254 (496)
Q Consensus 175 g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~~FS~~ 254 (496)
|+.+.|.+++|+|+|++..++. ....++.|||+....+.|. ...+||||||++..|+++||..+ ++++||+|
T Consensus 169 gs~~~G~l~~Dtltlg~~~~~~---~~v~~~~FGc~~~~~g~f~---~~~~GilGLG~~~~Sl~sql~~~--~~~~FSyc 240 (431)
T PLN03146 169 GSFTKGNLAVETLTIGSTSGRP---VSFPGIVFGCGHNNGGTFD---EKGSGIVGLGGGPLSLISQLGSS--IGGKFSYC 240 (431)
T ss_pred CCceeeEEEEEEEEeccCCCCc---ceeCCEEEeCCCCCCCCcc---CCCceeEecCCCCccHHHHhhHh--hCCcEEEE
Confidence 9988999999999998643222 1366899999998877642 35799999999999999999763 55799999
Q ss_pred ecCCC---CccceEEeCCCCC---CCeEEeeCCCC--CCceeEEEeEEEEccEEeecCcccccccCCCcEEEeccccccc
Q 010981 255 LKGQG---NGGGILVLGEILE---PSIVYSPLVPS--KPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTY 326 (496)
Q Consensus 255 l~~~~---~~~G~l~~Gg~d~---~~l~~~pl~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~ 326 (496)
|.+.. ...|.|+||+..+ +.+.|+|++.. ..+|.|+|++|+||++.++++...+.......+||||||++++
T Consensus 241 L~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~ 320 (431)
T PLN03146 241 LVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTL 320 (431)
T ss_pred CCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCcccee
Confidence 97522 3479999999642 35899999843 3689999999999999998877655423345799999999999
Q ss_pred ccHHHHHHHHHHHHHHhccCcCCC-CCCCCceEEeeCCccccCCeEEEEecCCcEEEeCCCceEEEeeeeCCceEEEEEE
Q 010981 327 LVEEAFDPFVSAITATVSQSVTPT-MSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGF 405 (496)
Q Consensus 327 lp~~~~~~i~~~i~~~~~~~~~~~-~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i~p~~y~~~~~~~~~~~~~cl~i 405 (496)
||+++|+++.++|..++....... ....+.||.... ...+|+|+|+| +|+++.|+|++|+++.. .+..|+++
T Consensus 321 Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~----~~~~Cl~~ 393 (431)
T PLN03146 321 LPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVS----EDLVCFAM 393 (431)
T ss_pred cCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcC----CCcEEEEE
Confidence 999999999999998886432211 112457887432 24689999999 58999999999999753 34578898
Q ss_pred EecCCCceeeCceEEeeEEEEEECCCCEEEEEeCCCCC
Q 010981 406 EKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCSL 443 (496)
Q Consensus 406 ~~~~~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~~c~~ 443 (496)
... ...||||+.|||++|+|||++++|||||+.+|++
T Consensus 394 ~~~-~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 394 IPT-SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred ecC-CCceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 765 4569999999999999999999999999999974
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.5e-56 Score=461.96 Aligned_cols=309 Identities=21% Similarity=0.379 Sum_probs=255.8
Q ss_pred cCCcceeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCC--CCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccC
Q 010981 76 IGDSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQ 153 (496)
Q Consensus 76 ~g~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~ 153 (496)
.+|.+.+|+++|+||||||+|.|++||||+++||+|..|.. |..+ +.||+++|+|++.+.+.
T Consensus 114 ~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~-------~~yd~s~SSTy~~~~~~--------- 177 (482)
T PTZ00165 114 LNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPH-------RKFDPKKSSTYTKLKLG--------- 177 (482)
T ss_pred ccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccccc-------CCCCccccCCcEecCCC---------
Confidence 34667799999999999999999999999999999999974 6655 89999999999764210
Q ss_pred CCCCCCCCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCC
Q 010981 154 TTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQG 233 (496)
Q Consensus 154 ~~~~~c~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~ 233 (496)
.....+.++|++|+ ..|.+++|+|+|++.. +.++.||+++..++.. +...++|||||||++
T Consensus 178 ---------~~~~~~~i~YGsGs-~~G~l~~DtV~ig~l~--------i~~q~FG~a~~~s~~~-f~~~~~DGILGLg~~ 238 (482)
T PTZ00165 178 ---------DESAETYIQYGTGE-CVLALGKDTVKIGGLK--------VKHQSIGLAIEESLHP-FADLPFDGLVGLGFP 238 (482)
T ss_pred ---------CccceEEEEeCCCc-EEEEEEEEEEEECCEE--------EccEEEEEEEeccccc-cccccccceeecCCC
Confidence 01125779999998 6899999999998753 6679999999876532 224578999999997
Q ss_pred CC---------chHHHHHhcCCCC-ceeEEeecCCCCccceEEeCCCCC------CCeEEeeCCCCCCceeEEEeEEEEc
Q 010981 234 DL---------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE------PSIVYSPLVPSKPHYNLNLHGITVN 297 (496)
Q Consensus 234 ~~---------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~~Gg~d~------~~l~~~pl~~~~~~w~v~l~~i~v~ 297 (496)
.. +++++|++||+++ ++||+||.++.+.+|+|+|||+|+ +++.|+|+. ...+|+|++++|+|+
T Consensus 239 ~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i~vg 317 (482)
T PTZ00165 239 DKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDILID 317 (482)
T ss_pred cccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeEEEC
Confidence 64 4789999999997 899999987666689999999983 479999997 578999999999999
Q ss_pred cEEeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecC
Q 010981 298 GQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEG 377 (496)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~g 377 (496)
++.+... ..+..+|+||||+++++|++++++|.+++++. .+|+..+.+|+|+|+| +
T Consensus 318 g~~~~~~------~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-----------------~~C~~~~~lP~itf~f-~ 373 (482)
T PTZ00165 318 GKSLGFC------DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-----------------EDCSNKDSLPRISFVL-E 373 (482)
T ss_pred CEEeeec------CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc-----------------ccccccccCCceEEEE-C
Confidence 9877542 23467999999999999999999999887532 2687777899999999 4
Q ss_pred Cc-----EEEeCCCceEEEeee-eCCceEEEEEEEecC-----CCceeeCceEEeeEEEEEECCCCEEEEEeCCCCCC
Q 010981 378 GA-----SMVLKPEEYLIHLGF-YDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANYDCSLS 444 (496)
Q Consensus 378 g~-----~~~i~p~~y~~~~~~-~~~~~~~cl~i~~~~-----~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~~c~~~ 444 (496)
|. +++++|++|+++... ..++..|.++++..+ +..||||++|||++|+|||.+++|||||+++|..+
T Consensus 374 g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 374 DVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred CCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 43 899999999997421 134557888998754 35799999999999999999999999999998753
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-55 Score=450.73 Aligned_cols=335 Identities=39% Similarity=0.694 Sum_probs=278.0
Q ss_pred eeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCC-CCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCC
Q 010981 81 WLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS-NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQC 159 (496)
Q Consensus 81 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~-~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c 159 (496)
+.|+++|+||||||+|.|++||||+++||+|..|. .|..+. .+.|+|++|+|++.+.|+++.|....+. |
T Consensus 45 ~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~-----~~~f~p~~SSt~~~~~c~~~~c~~~~~~----~ 115 (398)
T KOG1339|consen 45 GEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQH-----NPIFDPSASSTYKSVGCSSPRCKSLPQS----C 115 (398)
T ss_pred cccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccC-----CCccCccccccccccCCCCccccccccC----c
Confidence 39999999999999999999999999999999999 798741 2459999999999999999999977553 4
Q ss_pred CCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCchHH
Q 010981 160 PSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVIS 239 (496)
Q Consensus 160 ~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ 239 (496)
. .+..|.|.+.|++|+.++|++++|+|+|++.+ .....++.|||+..+.+.+... .+++||||||++.++++.
T Consensus 116 ~-~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~~~~~-~~~dGIlGLg~~~~S~~~ 188 (398)
T KOG1339|consen 116 S-PNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGSFGLF-AAFDGILGLGRGSLSVPS 188 (398)
T ss_pred c-cCCcCceEEEeCCCCceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccccccc-cccceEeecCCCCcccee
Confidence 4 36889999999998889999999999998743 1235679999999998762222 678999999999999999
Q ss_pred HHHhcCCCCceeEEeecCCCC---ccceEEeCCCCC----CCeEEeeCCCCCC-ceeEEEeEEEEccEEeecCccccccc
Q 010981 240 QLASRGITPRVFSHCLKGQGN---GGGILVLGEILE----PSIVYSPLVPSKP-HYNLNLHGITVNGQLLSIDPSAFAAS 311 (496)
Q Consensus 240 ~l~~~g~i~~~FS~~l~~~~~---~~G~l~~Gg~d~----~~l~~~pl~~~~~-~w~v~l~~i~v~~~~~~~~~~~~~~~ 311 (496)
|+...+...++||+||.+.+. .+|.|+||++|. +.+.|+||..... +|.|++.+|+|+++. +++...+...
T Consensus 189 q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~~~~~~~ 267 (398)
T KOG1339|consen 189 QLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGSSLFCTD 267 (398)
T ss_pred ecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCcceEecC
Confidence 999887776799999998753 489999999984 5789999995544 999999999999987 6665655433
Q ss_pred CCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCcccc----CCeEEEEecCCcEEEeCCCc
Q 010981 312 NNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEI----FPQVSLNFEGGASMVLKPEE 387 (496)
Q Consensus 312 ~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~----~P~i~f~f~gg~~~~i~p~~ 387 (496)
..++|+||||++++||+++|++|.++|.+.+.. ......|...|..... +|+|+|+|.+|+.+.+++++
T Consensus 268 -~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~------~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~ 340 (398)
T KOG1339|consen 268 -GGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV------VGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKN 340 (398)
T ss_pred -CCCEEEECCcceeeccHHHHHHHHHHHHhheec------cccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccc
Confidence 678999999999999999999999999997410 2233446666665554 99999999658999999999
Q ss_pred eEEEeeeeCCceEEEEEEEecC-C-CceeeCceEEeeEEEEEECC-CCEEEEEe--CCCC
Q 010981 388 YLIHLGFYDGAAMWCIGFEKSP-G-GVSILGDLVLKDKIFVYDLA-RQRVGWAN--YDCS 442 (496)
Q Consensus 388 y~~~~~~~~~~~~~cl~i~~~~-~-~~~iLG~~fl~~~y~VfD~~-~~~IGfa~--~~c~ 442 (496)
|+++..... .+|+++.... . ..||||+.|||+++++||.. ++|||||+ .+|+
T Consensus 341 y~~~~~~~~---~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 341 YLVEVSDGG---GVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred eEEEECCCC---CceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 999865311 2177655543 3 48999999999999999999 99999999 6665
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.1e-55 Score=441.09 Aligned_cols=300 Identities=28% Similarity=0.457 Sum_probs=249.7
Q ss_pred ceeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCC----CCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCC
Q 010981 80 YWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS----NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 155 (496)
Q Consensus 80 ~~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~----~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 155 (496)
+.+|+++|+||||+|+|.|+|||||+++||+|..|. .|..+ +.|+|++|+|++.
T Consensus 4 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~-------~~y~~~~SsT~~~--------------- 61 (325)
T cd05490 4 DAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLH-------HKYNSSKSSTYVK--------------- 61 (325)
T ss_pred CCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCc-------CcCCcccCcceee---------------
Confidence 459999999999999999999999999999999887 35544 7899999999952
Q ss_pred CCCCCCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC
Q 010981 156 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL 235 (496)
Q Consensus 156 ~~~c~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~ 235 (496)
..+.|.+.|++|+ +.|.+++|+|+|++.. ..++.|||++.+++.. +.....+||||||++..
T Consensus 62 --------~~~~~~i~Yg~G~-~~G~~~~D~v~~g~~~--------~~~~~Fg~~~~~~~~~-~~~~~~dGilGLg~~~~ 123 (325)
T cd05490 62 --------NGTEFAIQYGSGS-LSGYLSQDTVSIGGLQ--------VEGQLFGEAVKQPGIT-FIAAKFDGILGMAYPRI 123 (325)
T ss_pred --------CCcEEEEEECCcE-EEEEEeeeEEEECCEE--------EcCEEEEEEeeccCCc-ccceeeeEEEecCCccc
Confidence 3579999999998 7999999999998653 5678999998876632 12356799999999754
Q ss_pred c------hHHHHHhcCCCC-ceeEEeecCCC--CccceEEeCCCCC----CCeEEeeCCCCCCceeEEEeEEEEccEEee
Q 010981 236 S------VISQLASRGITP-RVFSHCLKGQG--NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLS 302 (496)
Q Consensus 236 s------~~~~l~~~g~i~-~~FS~~l~~~~--~~~G~l~~Gg~d~----~~l~~~pl~~~~~~w~v~l~~i~v~~~~~~ 302 (496)
+ ++++|++||+|+ ++||+||.++. ..+|+|+||++|+ +++.|+|+. .+.+|.|++++|+|+++...
T Consensus 124 s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~ 202 (325)
T cd05490 124 SVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT-RKAYWQIHMDQVDVGSGLTL 202 (325)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC-cceEEEEEeeEEEECCeeee
Confidence 3 778999999996 89999998642 2479999999994 789999997 56799999999999886432
Q ss_pred cCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEEE
Q 010981 303 IDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMV 382 (496)
Q Consensus 303 ~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~ 382 (496)
. .....++|||||+++++|++++++|.+++.+. ......|.++|+....+|+|+|+| +|+.++
T Consensus 203 ~-------~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---------~~~~~~~~~~C~~~~~~P~i~f~f-gg~~~~ 265 (325)
T cd05490 203 C-------KGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---------PLIQGEYMIDCEKIPTLPVISFSL-GGKVYP 265 (325)
T ss_pred c-------CCCCEEEECCCCccccCCHHHHHHHHHHhCCc---------cccCCCEEecccccccCCCEEEEE-CCEEEE
Confidence 1 23457999999999999999999999988642 112356899999877899999999 889999
Q ss_pred eCCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceEEeeEEEEEECCCCEEEEEe
Q 010981 383 LKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWAN 438 (496)
Q Consensus 383 i~p~~y~~~~~~~~~~~~~cl~i~~~~-----~~~~iLG~~fl~~~y~VfD~~~~~IGfa~ 438 (496)
|+|++|+++... .+...|.++|+..+ ...||||++|||++|+|||++++|||||+
T Consensus 266 l~~~~y~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 266 LTGEDYILKVSQ-RGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EChHHeEEeccC-CCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 999999997532 23456777887632 45799999999999999999999999995
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.8e-55 Score=437.97 Aligned_cols=298 Identities=29% Similarity=0.504 Sum_probs=255.2
Q ss_pred CcceeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCC--CCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCC
Q 010981 78 DSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 155 (496)
Q Consensus 78 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 155 (496)
+.+..|+++|+||||+|++.|+|||||+++||+|..|.. |..+ +.|+|++|+|++.
T Consensus 6 ~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~-------~~f~~~~Sst~~~--------------- 63 (317)
T cd05478 6 YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNH-------NRFNPRQSSTYQS--------------- 63 (317)
T ss_pred ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCccccccc-------CcCCCCCCcceee---------------
Confidence 345599999999999999999999999999999999975 5544 8999999999963
Q ss_pred CCCCCCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC
Q 010981 156 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL 235 (496)
Q Consensus 156 ~~~c~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~ 235 (496)
..+.|++.|++|+ +.|.+++|+|+|++.. +.++.|||+....+.+. .....+||||||++..
T Consensus 64 --------~~~~~~~~yg~gs-~~G~~~~D~v~ig~~~--------i~~~~fg~~~~~~~~~~-~~~~~dGilGLg~~~~ 125 (317)
T cd05478 64 --------TGQPLSIQYGTGS-MTGILGYDTVQVGGIS--------DTNQIFGLSETEPGSFF-YYAPFDGILGLAYPSI 125 (317)
T ss_pred --------CCcEEEEEECCce-EEEEEeeeEEEECCEE--------ECCEEEEEEEecCcccc-ccccccceeeeccchh
Confidence 3578999999998 7999999999998653 56799999988766542 2345799999998754
Q ss_pred ------chHHHHHhcCCCC-ceeEEeecCCCCccceEEeCCCC----CCCeEEeeCCCCCCceeEEEeEEEEccEEeecC
Q 010981 236 ------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEIL----EPSIVYSPLVPSKPHYNLNLHGITVNGQLLSID 304 (496)
Q Consensus 236 ------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~~Gg~d----~~~l~~~pl~~~~~~w~v~l~~i~v~~~~~~~~ 304 (496)
+++++|++||+|+ ++||+||.+++..+|+|+|||+| ++++.|+|+. ...+|.|++++|+|+++.+..
T Consensus 126 s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~-~~~~w~v~l~~v~v~g~~~~~- 203 (317)
T cd05478 126 ASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVT-AETYWQITVDSVTINGQVVAC- 203 (317)
T ss_pred cccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECC-CCcEEEEEeeEEEECCEEEcc-
Confidence 4889999999997 89999999876568999999998 4789999997 568999999999999998742
Q ss_pred cccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEEEeC
Q 010981 305 PSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLK 384 (496)
Q Consensus 305 ~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i~ 384 (496)
..+..++|||||+++++|++++++|.+++.+.. ...++|.++|+....+|+|+|+| +|+.++|+
T Consensus 204 ------~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~---------~~~~~~~~~C~~~~~~P~~~f~f-~g~~~~i~ 267 (317)
T cd05478 204 ------SGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ---------NQNGEMVVNCSSISSMPDVVFTI-NGVQYPLP 267 (317)
T ss_pred ------CCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc---------ccCCcEEeCCcCcccCCcEEEEE-CCEEEEEC
Confidence 234579999999999999999999999886532 13467999999877899999999 78999999
Q ss_pred CCceEEEeeeeCCceEEEEEEEecC-CCceeeCceEEeeEEEEEECCCCEEEEEe
Q 010981 385 PEEYLIHLGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDLARQRVGWAN 438 (496)
Q Consensus 385 p~~y~~~~~~~~~~~~~cl~i~~~~-~~~~iLG~~fl~~~y~VfD~~~~~IGfa~ 438 (496)
|++|+.+. .+.|.++|+..+ ...||||++|||++|+|||++++|||||+
T Consensus 268 ~~~y~~~~-----~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 268 PSAYILQD-----QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred HHHheecC-----CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 99999863 456778898865 46799999999999999999999999996
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.2e-55 Score=439.20 Aligned_cols=296 Identities=30% Similarity=0.503 Sum_probs=249.9
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCC--CCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCC
Q 010981 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCP 160 (496)
Q Consensus 83 Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~ 160 (496)
|+++|+||||||++.|+|||||+++||+|..|. .|..+ +.|+|++|+|++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~-------~~y~~~~SsT~~--------------------- 52 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH-------NRFQPSESSTYV--------------------- 52 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc-------ceECCCCCcccc---------------------
Confidence 899999999999999999999999999999997 57665 789999999995
Q ss_pred CCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCc----
Q 010981 161 SGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLS---- 236 (496)
Q Consensus 161 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s---- 236 (496)
...+.|.+.|++|+ +.|.+++|+|+|++.. ..++.|||+..+.+... ....++||||||++..+
T Consensus 53 --~~~~~~~i~Yg~g~-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~-~~~~~dGilGLg~~~~s~~~~ 120 (316)
T cd05486 53 --SNGEAFSIQYGTGS-LTGIIGIDQVTVEGIT--------VQNQQFAESVSEPGSTF-QDSEFDGILGLAYPSLAVDGV 120 (316)
T ss_pred --cCCcEEEEEeCCcE-EEEEeeecEEEECCEE--------EcCEEEEEeeccCcccc-cccccceEeccCchhhccCCC
Confidence 35689999999998 7999999999998643 56799999887765321 23568999999997654
Q ss_pred --hHHHHHhcCCCC-ceeEEeecCCC--CccceEEeCCCCC----CCeEEeeCCCCCCceeEEEeEEEEccEEeecCccc
Q 010981 237 --VISQLASRGITP-RVFSHCLKGQG--NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSA 307 (496)
Q Consensus 237 --~~~~l~~~g~i~-~~FS~~l~~~~--~~~G~l~~Gg~d~----~~l~~~pl~~~~~~w~v~l~~i~v~~~~~~~~~~~ 307 (496)
++++|++||+|+ ++||+||.++. ..+|+|+||++|+ +++.|+|+. ...+|.|++++|+|+++.+..
T Consensus 121 ~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~-~~~~w~v~l~~i~v~g~~~~~---- 195 (316)
T cd05486 121 TPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT-VQGYWQIQLDNIQVGGTVIFC---- 195 (316)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECC-CceEEEEEeeEEEEecceEec----
Confidence 689999999997 89999998642 3479999999984 789999997 578999999999999987632
Q ss_pred ccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEEEeCCCc
Q 010981 308 FAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEE 387 (496)
Q Consensus 308 ~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i~p~~ 387 (496)
.....++|||||+++++|+++++++.+++.+. ..+++|.++|+....+|+|+|+| +|+.++|+|++
T Consensus 196 ---~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------~~~~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~ 261 (316)
T cd05486 196 ---SDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------ATDGEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQA 261 (316)
T ss_pred ---CCCCEEEECCCcchhhcCHHHHHHHHHHhCCc----------ccCCcEEEeccccccCCCEEEEE-CCEEEEeCHHH
Confidence 23467999999999999999999998877542 12356999999777899999999 78999999999
Q ss_pred eEEEeeeeCCceEEEEEEEecC-----CCceeeCceEEeeEEEEEECCCCEEEEEe
Q 010981 388 YLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWAN 438 (496)
Q Consensus 388 y~~~~~~~~~~~~~cl~i~~~~-----~~~~iLG~~fl~~~y~VfD~~~~~IGfa~ 438 (496)
|++.... ++...|.++|+..+ ...||||++|||++|+|||++++|||||+
T Consensus 262 y~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 262 YTLEDQS-DGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred eEEeccc-CCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 9987432 34567778887643 35799999999999999999999999996
No 7
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.2e-55 Score=436.69 Aligned_cols=304 Identities=28% Similarity=0.529 Sum_probs=249.5
Q ss_pred eeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCC
Q 010981 81 WLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCP 160 (496)
Q Consensus 81 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~ 160 (496)
+.|+++|+||||+|++.|+|||||+++||+|..|..|..+. .+.|+|++|+|++.++|++..|.. ...|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~-----~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~- 70 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM-----EPPYNLNNSITSSILYCDCNKCCY-----CLSC- 70 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC-----CCCcCcccccccccccCCCccccc-----cCcC-
Confidence 38999999999999999999999999999999999997652 378999999999999999999953 1234
Q ss_pred CCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCc----
Q 010981 161 SGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLS---- 236 (496)
Q Consensus 161 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s---- 236 (496)
.++.|.|.+.|++|+.+.|.+++|+|+|++..... .......+.|||+..+.+.+. ....+||||||+...+
T Consensus 71 -~~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~--~~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 71 -LNNKCEYSISYSEGSSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFL--TQQATGILGLSLTKNNGLPT 146 (326)
T ss_pred -CCCcCcEEEEECCCCceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCccc--ccccceEEEccCCcccccCc
Confidence 35779999999999888999999999998654221 011234689999998877653 3568999999998643
Q ss_pred hHHHHHhcCCCC---ceeEEeecCCCCccceEEeCCCCC--------------CCeEEeeCCCCCCceeEEEeEEEEccE
Q 010981 237 VISQLASRGITP---RVFSHCLKGQGNGGGILVLGEILE--------------PSIVYSPLVPSKPHYNLNLHGITVNGQ 299 (496)
Q Consensus 237 ~~~~l~~~g~i~---~~FS~~l~~~~~~~G~l~~Gg~d~--------------~~l~~~pl~~~~~~w~v~l~~i~v~~~ 299 (496)
...+|.+++.+. ++||+||+++ +|+|+||++|+ +++.|+|+. ...+|.|++++|+|+++
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~-~~~~y~v~l~~i~vg~~ 222 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT-RKYYYYVKLEGLSVYGT 222 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEecc-CCceEEEEEEEEEEccc
Confidence 333466665552 8999999863 69999999983 578999997 45899999999999987
Q ss_pred EeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCc
Q 010981 300 LLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGA 379 (496)
Q Consensus 300 ~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~ 379 (496)
.... .......++|||||++++||+++|+++.+++ |+|+|+|++|+
T Consensus 223 ~~~~-----~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-----------------------------P~i~~~f~~g~ 268 (326)
T cd06096 223 TSNS-----GNTKGLGMLVDSGSTLSHFPEDLYNKINNFF-----------------------------PTITIIFENNL 268 (326)
T ss_pred ccce-----ecccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------------------------CcEEEEEcCCc
Confidence 6110 1124568999999999999999999888775 88999996589
Q ss_pred EEEeCCCceEEEeeeeCCceEEEEEEEecCCCceeeCceEEeeEEEEEECCCCEEEEEeCCCC
Q 010981 380 SMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCS 442 (496)
Q Consensus 380 ~~~i~p~~y~~~~~~~~~~~~~cl~i~~~~~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~~c~ 442 (496)
+++++|++|+++.. ...||+++... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 269 ~~~i~p~~y~~~~~----~~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 269 KIDWKPSSYLYKKE----SFWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEEECHHHhccccC----CceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999999999742 23588887765 468999999999999999999999999999994
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.7e-54 Score=431.27 Aligned_cols=297 Identities=30% Similarity=0.537 Sum_probs=252.4
Q ss_pred eeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCC--CCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCC
Q 010981 81 WLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQ 158 (496)
Q Consensus 81 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~ 158 (496)
..|+++|.||||||++.|+|||||+++||+|..|.. |..+ +.|||++|+|++
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~-------~~f~~~~SsT~~------------------- 55 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNH-------TKFNPSQSSTYS------------------- 55 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCcccccc-------CCCCcccCCCce-------------------
Confidence 389999999999999999999999999999999984 6654 799999999995
Q ss_pred CCCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC----
Q 010981 159 CPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD---- 234 (496)
Q Consensus 159 c~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~---- 234 (496)
...|.|++.|++|+ +.|.+++|+|+|++.. ..++.|||+....+.. +.....+||||||++.
T Consensus 56 ----~~~~~~~~~Yg~Gs-~~G~~~~D~i~~g~~~--------i~~~~Fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~ 121 (318)
T cd05477 56 ----TNGETFSLQYGSGS-LTGIFGYDTVTVQGII--------ITNQEFGLSETEPGTN-FVYAQFDGILGLAYPSISAG 121 (318)
T ss_pred ----ECCcEEEEEECCcE-EEEEEEeeEEEECCEE--------EcCEEEEEEEeccccc-ccccceeeEeecCccccccc
Confidence 35689999999998 7999999999998653 5679999999875531 1234679999999853
Q ss_pred --CchHHHHHhcCCCC-ceeEEeecCCC-CccceEEeCCCCC----CCeEEeeCCCCCCceeEEEeEEEEccEEeecCcc
Q 010981 235 --LSVISQLASRGITP-RVFSHCLKGQG-NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPS 306 (496)
Q Consensus 235 --~s~~~~l~~~g~i~-~~FS~~l~~~~-~~~G~l~~Gg~d~----~~l~~~pl~~~~~~w~v~l~~i~v~~~~~~~~~~ 306 (496)
.+++++|+++|.|+ ++||+||.++. ..+|.|+||++|+ +++.|+|+. ...+|.|++++|+|+++.+...
T Consensus 122 ~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~-- 198 (318)
T cd05477 122 GATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT-SETYWQIGIQGFQINGQATGWC-- 198 (318)
T ss_pred CCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC-CceEEEEEeeEEEECCEEeccc--
Confidence 46899999999996 89999998752 3479999999983 689999997 5689999999999999887432
Q ss_pred cccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEEEeCCC
Q 010981 307 AFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPE 386 (496)
Q Consensus 307 ~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i~p~ 386 (496)
..+..+||||||+++++|++++++|++++.++. ...++|.++|+....+|.|+|+| +|+++.|+|+
T Consensus 199 ----~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~---------~~~~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~ 264 (318)
T cd05477 199 ----SQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ---------DQYGQYVVNCNNIQNLPTLTFTI-NGVSFPLPPS 264 (318)
T ss_pred ----CCCceeeECCCCccEECCHHHHHHHHHHhCCcc---------ccCCCEEEeCCccccCCcEEEEE-CCEEEEECHH
Confidence 234579999999999999999999999886542 13467999999888899999999 7899999999
Q ss_pred ceEEEeeeeCCceEEEEEEEecC------CCceeeCceEEeeEEEEEECCCCEEEEEeC
Q 010981 387 EYLIHLGFYDGAAMWCIGFEKSP------GGVSILGDLVLKDKIFVYDLARQRVGWANY 439 (496)
Q Consensus 387 ~y~~~~~~~~~~~~~cl~i~~~~------~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~ 439 (496)
+|+.+. .+.|+++|++.. ...||||++|||++|+|||++++|||||++
T Consensus 265 ~y~~~~-----~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 265 AYILQN-----NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred HeEecC-----CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 999863 457888997642 246999999999999999999999999985
No 9
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.9e-54 Score=432.35 Aligned_cols=301 Identities=28% Similarity=0.467 Sum_probs=252.4
Q ss_pred CcceeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCC----CCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccC
Q 010981 78 DSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN----CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQ 153 (496)
Q Consensus 78 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~----C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~ 153 (496)
+.+..|+++|+||||+|++.|++||||+++||+|..|.. |..+ +.|+|++|+|++.
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~-------~~y~~~~Sst~~~------------- 66 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLH-------NKYDSTKSSTYKK------------- 66 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCC-------CeECCcCCCCeEE-------------
Confidence 444599999999999999999999999999999998873 5433 7899999999963
Q ss_pred CCCCCCCCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCC
Q 010981 154 TTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQG 233 (496)
Q Consensus 154 ~~~~~c~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~ 233 (496)
..|.|.+.|++|+ +.|.+++|+++|++.. ..++.|||+..+.+. .+.....+||||||++
T Consensus 67 ----------~~~~~~i~Y~~g~-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~-~~~~~~~~GilGLg~~ 126 (329)
T cd05485 67 ----------NGTEFAIQYGSGS-LSGFLSTDTVSVGGVS--------VKGQTFAEAINEPGL-TFVAAKFDGILGMGYS 126 (329)
T ss_pred ----------CCeEEEEEECCce-EEEEEecCcEEECCEE--------ECCEEEEEEEecCCc-cccccccceEEEcCCc
Confidence 4689999999998 7999999999998653 457899999887653 1234568999999998
Q ss_pred CCc------hHHHHHhcCCCC-ceeEEeecCCCC--ccceEEeCCCC----CCCeEEeeCCCCCCceeEEEeEEEEccEE
Q 010981 234 DLS------VISQLASRGITP-RVFSHCLKGQGN--GGGILVLGEIL----EPSIVYSPLVPSKPHYNLNLHGITVNGQL 300 (496)
Q Consensus 234 ~~s------~~~~l~~~g~i~-~~FS~~l~~~~~--~~G~l~~Gg~d----~~~l~~~pl~~~~~~w~v~l~~i~v~~~~ 300 (496)
..+ ++.+|++||+|+ ++||+||.++.+ .+|+|+||++| ++++.|+|+. .+.+|.|++++++++++.
T Consensus 127 ~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~~~~i~v~~~~ 205 (329)
T cd05485 127 SISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT-RKGYWQFKMDSVSVGEGE 205 (329)
T ss_pred cccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC-CceEEEEEeeEEEECCee
Confidence 655 578999999996 899999987532 47999999998 3789999997 578999999999999976
Q ss_pred eecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcE
Q 010981 301 LSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGAS 380 (496)
Q Consensus 301 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~ 380 (496)
+. ..+..+||||||+++++|++++++|.+++++.. . ...+|.++|+....+|+|+|+| ||+.
T Consensus 206 ~~--------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~-------~--~~~~~~~~C~~~~~~p~i~f~f-gg~~ 267 (329)
T cd05485 206 FC--------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP-------I--IGGEYMVNCSAIPSLPDITFVL-GGKS 267 (329)
T ss_pred ec--------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCcc-------c--cCCcEEEeccccccCCcEEEEE-CCEE
Confidence 52 234579999999999999999999988876431 1 2357999999877889999999 8899
Q ss_pred EEeCCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceEEeeEEEEEECCCCEEEEEe
Q 010981 381 MVLKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWAN 438 (496)
Q Consensus 381 ~~i~p~~y~~~~~~~~~~~~~cl~i~~~~-----~~~~iLG~~fl~~~y~VfD~~~~~IGfa~ 438 (496)
+.|+|++|+++... .+...|.++++..+ ...||||++|||++|+|||++++|||||+
T Consensus 268 ~~i~~~~yi~~~~~-~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 268 FSLTGKDYVLKVTQ-MGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred eEEChHHeEEEecC-CCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 99999999998643 34457878888642 35799999999999999999999999984
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.1e-54 Score=430.60 Aligned_cols=300 Identities=24% Similarity=0.417 Sum_probs=251.1
Q ss_pred cceeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCC----CCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCC
Q 010981 79 SYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN----CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQT 154 (496)
Q Consensus 79 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~----C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~ 154 (496)
.+..|+++|+||||+|++.|+|||||+++||++..|.. |..+ +.|+|++|+|++.
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~-------~~y~~~~SsT~~~-------------- 63 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTH-------NLYDASDSSTYKE-------------- 63 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhccc-------CcCCCCCCeeeeE--------------
Confidence 34599999999999999999999999999999988875 4444 7899999999963
Q ss_pred CCCCCCCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC
Q 010981 155 TATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD 234 (496)
Q Consensus 155 ~~~~c~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~ 234 (496)
..|.|++.|++|+ +.|.+++|+|++++.. . .+.||++....+. .+....++||||||++.
T Consensus 64 ---------~~~~~~~~Yg~g~-~~G~~~~D~v~~g~~~--------~-~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~ 123 (326)
T cd05487 64 ---------NGTEFTIHYASGT-VKGFLSQDIVTVGGIP--------V-TQMFGEVTALPAI-PFMLAKFDGVLGMGYPK 123 (326)
T ss_pred ---------CCEEEEEEeCCce-EEEEEeeeEEEECCEE--------e-eEEEEEEEeccCC-ccceeecceEEecCChh
Confidence 4689999999998 8999999999998643 2 3679998876431 11234679999999875
Q ss_pred C------chHHHHHhcCCCC-ceeEEeecCCC--CccceEEeCCCCC----CCeEEeeCCCCCCceeEEEeEEEEccEEe
Q 010981 235 L------SVISQLASRGITP-RVFSHCLKGQG--NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLL 301 (496)
Q Consensus 235 ~------s~~~~l~~~g~i~-~~FS~~l~~~~--~~~G~l~~Gg~d~----~~l~~~pl~~~~~~w~v~l~~i~v~~~~~ 301 (496)
. +++++|++||+|+ ++||+||.+++ ..+|+|+||++|+ +++.|+|+. ...+|.|++++|+|+++.+
T Consensus 124 ~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~ 202 (326)
T cd05487 124 QAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS-KTGFWQIQMKGVSVGSSTL 202 (326)
T ss_pred hcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC-cCceEEEEecEEEECCEEE
Confidence 4 4788999999996 89999998753 3579999999984 789999997 5779999999999999876
Q ss_pred ecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEE
Q 010981 302 SIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASM 381 (496)
Q Consensus 302 ~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~ 381 (496)
.. ..+..++|||||+++++|+++++++++++++.. ....|.++|+....+|+|+|+| +|..+
T Consensus 203 ~~-------~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~----------~~~~y~~~C~~~~~~P~i~f~f-gg~~~ 264 (326)
T cd05487 203 LC-------EDGCTAVVDTGASFISGPTSSISKLMEALGAKE----------RLGDYVVKCNEVPTLPDISFHL-GGKEY 264 (326)
T ss_pred ec-------CCCCEEEECCCccchhCcHHHHHHHHHHhCCcc----------cCCCEEEeccccCCCCCEEEEE-CCEEE
Confidence 42 234679999999999999999999999886542 1356899999888899999999 88999
Q ss_pred EeCCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceEEeeEEEEEECCCCEEEEEeC
Q 010981 382 VLKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANY 439 (496)
Q Consensus 382 ~i~p~~y~~~~~~~~~~~~~cl~i~~~~-----~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~ 439 (496)
+|++++|+++... .+...|+++|+..+ ...||||++|||++|+|||++++|||||++
T Consensus 265 ~v~~~~yi~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 265 TLSSSDYVLQDSD-FSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EeCHHHhEEeccC-CCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 9999999997543 33567888998643 357999999999999999999999999985
No 11
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=3.4e-54 Score=428.43 Aligned_cols=291 Identities=30% Similarity=0.477 Sum_probs=242.1
Q ss_pred CcceeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCC---CCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCC
Q 010981 78 DSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS---NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQT 154 (496)
Q Consensus 78 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~---~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~ 154 (496)
+.+..|+++|+||||+|+|.|+|||||+++||+|..|. .|..+ +.|+|++|+|++
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~-------~~y~~~~SsT~~--------------- 63 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH-------SKYKSSKSSTYK--------------- 63 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc-------CcCCcccCCCcc---------------
Confidence 34459999999999999999999999999999999996 68765 789999999995
Q ss_pred CCCCCCCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC
Q 010981 155 TATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD 234 (496)
Q Consensus 155 ~~~~c~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~ 234 (496)
...+.+.+.|++|+ +.|.+++|+|+|++.. ..++.||++..+.+. .+....++||||||++.
T Consensus 64 --------~~~~~~~i~Yg~G~-~~G~~~~D~v~ig~~~--------v~~~~f~~~~~~~~~-~~~~~~~dGilGLg~~~ 125 (317)
T cd06098 64 --------KNGTSASIQYGTGS-ISGFFSQDSVTVGDLV--------VKNQVFIEATKEPGL-TFLLAKFDGILGLGFQE 125 (317)
T ss_pred --------cCCCEEEEEcCCce-EEEEEEeeEEEECCEE--------ECCEEEEEEEecCCc-cccccccceeccccccc
Confidence 24568999999998 7999999999998643 567999999876543 12245789999999975
Q ss_pred Cc------hHHHHHhcCCCC-ceeEEeecCCC--CccceEEeCCCCC----CCeEEeeCCCCCCceeEEEeEEEEccEEe
Q 010981 235 LS------VISQLASRGITP-RVFSHCLKGQG--NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLL 301 (496)
Q Consensus 235 ~s------~~~~l~~~g~i~-~~FS~~l~~~~--~~~G~l~~Gg~d~----~~l~~~pl~~~~~~w~v~l~~i~v~~~~~ 301 (496)
.+ ++.+|++||+|+ ++||+||.+.. ..+|+|+||++|+ +++.|+|+. ...+|.|++++|+|+++.+
T Consensus 126 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~ 204 (317)
T cd06098 126 ISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT-RKGYWQFEMGDVLIGGKST 204 (317)
T ss_pred hhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC-cCcEEEEEeCeEEECCEEe
Confidence 43 678999999996 89999998642 3579999999984 689999997 5679999999999999876
Q ss_pred ecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEE
Q 010981 302 SIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASM 381 (496)
Q Consensus 302 ~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~ 381 (496)
... .....++|||||+++++|+++++++. |.++|+....+|+|+|+| +|..+
T Consensus 205 ~~~------~~~~~aivDTGTs~~~lP~~~~~~i~---------------------~~~~C~~~~~~P~i~f~f-~g~~~ 256 (317)
T cd06098 205 GFC------AGGCAAIADSGTSLLAGPTTIVTQIN---------------------SAVDCNSLSSMPNVSFTI-GGKTF 256 (317)
T ss_pred eec------CCCcEEEEecCCcceeCCHHHHHhhh---------------------ccCCccccccCCcEEEEE-CCEEE
Confidence 532 23457999999999999998765542 456788767899999999 88999
Q ss_pred EeCCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceEEeeEEEEEECCCCEEEEEe
Q 010981 382 VLKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWAN 438 (496)
Q Consensus 382 ~i~p~~y~~~~~~~~~~~~~cl~i~~~~-----~~~~iLG~~fl~~~y~VfD~~~~~IGfa~ 438 (496)
+|+|++|+++... +....|.++|+..+ ...||||++|||++|+|||++++|||||+
T Consensus 257 ~l~~~~yi~~~~~-~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 257 ELTPEQYILKVGE-GAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEChHHeEEeecC-CCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 9999999987542 23456777887543 34799999999999999999999999995
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.4e-54 Score=427.76 Aligned_cols=295 Identities=29% Similarity=0.482 Sum_probs=250.3
Q ss_pred ceeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCC--CCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCC
Q 010981 80 YWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTAT 157 (496)
Q Consensus 80 ~~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~ 157 (496)
+..|+++|+||||+|++.|+|||||+++||+|..|. .|..+ +.|++++|+|++
T Consensus 8 ~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~-------~~y~~~~Sst~~------------------ 62 (320)
T cd05488 8 NAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH-------SKYDSSASSTYK------------------ 62 (320)
T ss_pred CCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc-------ceECCCCCccee------------------
Confidence 459999999999999999999999999999999997 47655 789999999985
Q ss_pred CCCCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCc-
Q 010981 158 QCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLS- 236 (496)
Q Consensus 158 ~c~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s- 236 (496)
.+.|.|.+.|++|+ ++|.+++|+++|++.. ..++.|||+....+.. +....++||||||++..+
T Consensus 63 -----~~~~~~~~~y~~g~-~~G~~~~D~v~ig~~~--------~~~~~f~~a~~~~g~~-~~~~~~dGilGLg~~~~s~ 127 (320)
T cd05488 63 -----ANGTEFKIQYGSGS-LEGFVSQDTLSIGDLT--------IKKQDFAEATSEPGLA-FAFGKFDGILGLAYDTISV 127 (320)
T ss_pred -----eCCCEEEEEECCce-EEEEEEEeEEEECCEE--------ECCEEEEEEecCCCcc-eeeeeeceEEecCCccccc
Confidence 35689999999998 7999999999998653 5578999998776542 223467999999997654
Q ss_pred -----hHHHHHhcCCCC-ceeEEeecCCCCccceEEeCCCCC----CCeEEeeCCCCCCceeEEEeEEEEccEEeecCcc
Q 010981 237 -----VISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPS 306 (496)
Q Consensus 237 -----~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~~Gg~d~----~~l~~~pl~~~~~~w~v~l~~i~v~~~~~~~~~~ 306 (496)
.+.+|++||+|+ ++||+||.+....+|.|+||++|+ +++.|+|+. ...+|.|++++|+|+++.+..
T Consensus 128 ~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~~--- 203 (320)
T cd05488 128 NKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELEL--- 203 (320)
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEecc---
Confidence 456899999996 899999998656689999999983 789999997 567999999999999987643
Q ss_pred cccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEEEeCCC
Q 010981 307 AFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPE 386 (496)
Q Consensus 307 ~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i~p~ 386 (496)
.+..++|||||+++++|+++++++.+++.+.. ....+|.++|+....+|+|+|+| +|+++.|+|+
T Consensus 204 -----~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~---------~~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~ 268 (320)
T cd05488 204 -----ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK---------SWNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPF 268 (320)
T ss_pred -----CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc---------ccCCcEEeeccccccCCCEEEEE-CCEEEEECHH
Confidence 23579999999999999999999988875431 23567999999878899999999 7899999999
Q ss_pred ceEEEeeeeCCceEEEEEEEecC-----CCceeeCceEEeeEEEEEECCCCEEEEEe
Q 010981 387 EYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWAN 438 (496)
Q Consensus 387 ~y~~~~~~~~~~~~~cl~i~~~~-----~~~~iLG~~fl~~~y~VfD~~~~~IGfa~ 438 (496)
+|+++. .+.|.+.+...+ ...||||++|||++|+|||++++|||||+
T Consensus 269 ~y~~~~-----~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 269 DYTLEV-----SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred HheecC-----CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 999853 346777887643 34699999999999999999999999996
No 13
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.4e-53 Score=436.75 Aligned_cols=300 Identities=25% Similarity=0.384 Sum_probs=246.8
Q ss_pred CcceeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCC--CCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCC
Q 010981 78 DSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 155 (496)
Q Consensus 78 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 155 (496)
+.+.+|+++|+||||||+|.|+|||||+++||+|..|.. |..+ +.|||++|+|++.
T Consensus 135 ~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~-------~~yd~s~SsT~~~--------------- 192 (453)
T PTZ00147 135 LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETK-------NLYDSSKSKTYEK--------------- 192 (453)
T ss_pred cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCC-------CccCCccCcceEE---------------
Confidence 345599999999999999999999999999999999974 6555 7899999999963
Q ss_pred CCCCCCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCC-CCCCCCCcceeeecCCCC
Q 010981 156 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGD-LSKTDKAIDGIFGFGQGD 234 (496)
Q Consensus 156 ~~~c~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~-~~~~~~~~~GIlGLg~~~ 234 (496)
..+.|++.|++|+ +.|.+++|+|+||+.. .+ ..|+++....+. .......+|||||||++.
T Consensus 193 --------~~~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~--------v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~ 254 (453)
T PTZ00147 193 --------DGTKVEMNYVSGT-VSGFFSKDLVTIGNLS--------VP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKD 254 (453)
T ss_pred --------CCCEEEEEeCCCC-EEEEEEEEEEEECCEE--------EE-EEEEEEEeccCcccccccccccceecccCCc
Confidence 4578999999997 8999999999998653 23 578888766542 012345689999999986
Q ss_pred Cc------hHHHHHhcCCCC-ceeEEeecCCCCccceEEeCCCC----CCCeEEeeCCCCCCceeEEEeEEEEccEEeec
Q 010981 235 LS------VISQLASRGITP-RVFSHCLKGQGNGGGILVLGEIL----EPSIVYSPLVPSKPHYNLNLHGITVNGQLLSI 303 (496)
Q Consensus 235 ~s------~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~~Gg~d----~~~l~~~pl~~~~~~w~v~l~~i~v~~~~~~~ 303 (496)
.+ ++.+|++||+|+ ++||+||++.+...|.|+|||+| ++++.|+|+. ...+|.|+++ +.+++...
T Consensus 255 ~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~-~~~~W~V~l~-~~vg~~~~-- 330 (453)
T PTZ00147 255 LSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN-HDLYWQVDLD-VHFGNVSS-- 330 (453)
T ss_pred cccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC-CCceEEEEEE-EEECCEec--
Confidence 54 678999999997 79999998765668999999999 4799999997 5679999998 47765432
Q ss_pred CcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEEEe
Q 010981 304 DPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVL 383 (496)
Q Consensus 304 ~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i 383 (496)
....+||||||+++++|+++++++.+++.+.. ......|.++|+. ..+|+|+|.| +|..++|
T Consensus 331 --------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--------~~~~~~y~~~C~~-~~lP~~~f~f-~g~~~~L 392 (453)
T PTZ00147 331 --------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--------VPFLPLYVTTCNN-TKLPTLEFRS-PNKVYTL 392 (453)
T ss_pred --------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--------cCCCCeEEEeCCC-CCCCeEEEEE-CCEEEEE
Confidence 34679999999999999999999999885431 1123447889986 5689999999 7899999
Q ss_pred CCCceEEEeeeeCCceEEEEEEEecC--CCceeeCceEEeeEEEEEECCCCEEEEEeCC
Q 010981 384 KPEEYLIHLGFYDGAAMWCIGFEKSP--GGVSILGDLVLKDKIFVYDLARQRVGWANYD 440 (496)
Q Consensus 384 ~p~~y~~~~~~~~~~~~~cl~i~~~~--~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~~ 440 (496)
+|++|+.+... .+.+.|.++|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 393 ~p~~yi~~~~~-~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 393 EPEYYLQPIED-IGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred CHHHheecccc-CCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 99999986432 34456778898765 4579999999999999999999999999986
No 14
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.6e-53 Score=420.76 Aligned_cols=290 Identities=34% Similarity=0.615 Sum_probs=239.8
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCCC
Q 010981 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPS 161 (496)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 161 (496)
+|+++|.||||||++.|+|||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 499999999999999999999999999987543
Q ss_pred CCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCchHHHH
Q 010981 162 GSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQL 241 (496)
Q Consensus 162 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l 241 (496)
|.|.++|++|+.++|.+++|+|+|++.. ...++.|||+...++.+ ...+||||||++..+++.|+
T Consensus 34 ----~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~----~~~~GilGLg~~~~s~~~ql 98 (299)
T cd05472 34 ----CLYQVSYGDGSYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLF----GGAAGLLGLGRGKLSLPSQT 98 (299)
T ss_pred ----CeeeeEeCCCceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCcc----CCCCEEEECCCCcchHHHHh
Confidence 3688999999978999999999998641 25679999999887653 26799999999999999998
Q ss_pred HhcCCCCceeEEeecCCC-CccceEEeCCCCC--CCeEEeeCCCCC---CceeEEEeEEEEccEEeecCcccccccCCCc
Q 010981 242 ASRGITPRVFSHCLKGQG-NGGGILVLGEILE--PSIVYSPLVPSK---PHYNLNLHGITVNGQLLSIDPSAFAASNNRE 315 (496)
Q Consensus 242 ~~~g~i~~~FS~~l~~~~-~~~G~l~~Gg~d~--~~l~~~pl~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 315 (496)
..+ .+++||+||.+.. ..+|+|+||++|+ +++.|+|++.++ .+|.|+|++|+|+++.+.++... .....
T Consensus 99 ~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~---~~~~~ 173 (299)
T cd05472 99 ASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS---FGAGG 173 (299)
T ss_pred hHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc---cCCCC
Confidence 765 4589999998754 5589999999996 799999998543 58999999999999987653221 23467
Q ss_pred EEEecccccccccHHHHHHHHHHHHHHhccCcC-CCCCCCCceEEeeCCccccCCeEEEEecCCcEEEeCCCceEEEeee
Q 010981 316 TIVDSGTTLTYLVEEAFDPFVSAITATVSQSVT-PTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGF 394 (496)
Q Consensus 316 ~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i~p~~y~~~~~~ 394 (496)
++|||||+++++|+++|++|.+++.++...... ......+.||.++|.....+|+|+|+|+++.+++|+|++|+++..
T Consensus 174 ~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~- 252 (299)
T cd05472 174 VIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD- 252 (299)
T ss_pred eEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-
Confidence 999999999999999999999999987643211 111122358888887667899999999668999999999998432
Q ss_pred eCCceEEEEEEEecC--CCceeeCceEEeeEEEEEECCCCEEEEEeCCC
Q 010981 395 YDGAAMWCIGFEKSP--GGVSILGDLVLKDKIFVYDLARQRVGWANYDC 441 (496)
Q Consensus 395 ~~~~~~~cl~i~~~~--~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~~c 441 (496)
..+.+|+++.... ...||||+.|||++|+|||++++|||||+.+|
T Consensus 253 --~~~~~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 253 --DSSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred --CCCCEEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 2335678887753 45799999999999999999999999999999
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=8.8e-53 Score=429.87 Aligned_cols=300 Identities=23% Similarity=0.375 Sum_probs=244.9
Q ss_pred CcceeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCC--CCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCC
Q 010981 78 DSYWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 155 (496)
Q Consensus 78 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 155 (496)
+.+.+|+++|+||||+|+|.|+|||||+++||+|..|. .|..+ +.|+|++|+|++
T Consensus 134 ~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~-------~~yd~s~SsT~~---------------- 190 (450)
T PTZ00013 134 VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK-------NLYDSSKSKSYE---------------- 190 (450)
T ss_pred cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC-------CCccCccCcccc----------------
Confidence 44559999999999999999999999999999999997 47665 789999999995
Q ss_pred CCCCCCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCC-CCCCCCCcceeeecCCCC
Q 010981 156 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGD-LSKTDKAIDGIFGFGQGD 234 (496)
Q Consensus 156 ~~~c~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~-~~~~~~~~~GIlGLg~~~ 234 (496)
...+.+.+.|++|+ +.|.+++|+|+||+.. .. ..||++....+. ..+....+|||||||++.
T Consensus 191 -------~~~~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~--------~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~ 253 (450)
T PTZ00013 191 -------KDGTKVDITYGSGT-VKGFFSKDLVTLGHLS--------MP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKD 253 (450)
T ss_pred -------cCCcEEEEEECCce-EEEEEEEEEEEECCEE--------Ec-cEEEEEEeccccccceecccccceecccCCc
Confidence 34689999999998 8999999999998653 22 578887765421 111234679999999976
Q ss_pred Cc------hHHHHHhcCCCC-ceeEEeecCCCCccceEEeCCCCC----CCeEEeeCCCCCCceeEEEeEEEEccEEeec
Q 010981 235 LS------VISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSI 303 (496)
Q Consensus 235 ~s------~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~~Gg~d~----~~l~~~pl~~~~~~w~v~l~~i~v~~~~~~~ 303 (496)
.+ ++.+|++||+|+ ++||+||++.+..+|.|+|||+|+ +++.|+|+. ...+|.|+++ +.++....
T Consensus 254 ~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~-~~~yW~I~l~-v~~G~~~~-- 329 (450)
T PTZ00013 254 LSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQTM-- 329 (450)
T ss_pred cccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC-cCceEEEEEE-EEECceec--
Confidence 53 788999999997 799999987655689999999993 789999997 5679999998 66654332
Q ss_pred CcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEEEe
Q 010981 304 DPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVL 383 (496)
Q Consensus 304 ~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i 383 (496)
....+++||||+++++|+++++++.+++++.. ....+.|.++|+. ..+|+|+|+| +|.+++|
T Consensus 330 --------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--------~~~~~~y~~~C~~-~~lP~i~F~~-~g~~~~L 391 (450)
T PTZ00013 330 --------QKANVIVDSGTTTITAPSEFLNKFFANLNVIK--------VPFLPFYVTTCDN-KEMPTLEFKS-ANNTYTL 391 (450)
T ss_pred --------cccceEECCCCccccCCHHHHHHHHHHhCCee--------cCCCCeEEeecCC-CCCCeEEEEE-CCEEEEE
Confidence 24579999999999999999999988875431 1123458889975 5789999999 7899999
Q ss_pred CCCceEEEeeeeCCceEEEEEEEecC--CCceeeCceEEeeEEEEEECCCCEEEEEeCC
Q 010981 384 KPEEYLIHLGFYDGAAMWCIGFEKSP--GGVSILGDLVLKDKIFVYDLARQRVGWANYD 440 (496)
Q Consensus 384 ~p~~y~~~~~~~~~~~~~cl~i~~~~--~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~~ 440 (496)
+|++|+.+... .++..|.+++++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 392 ~p~~Yi~~~~~-~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 392 EPEYYMNPLLD-VDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CHHHheehhcc-CCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99999976432 22456778998754 4679999999999999999999999999975
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.3e-51 Score=415.99 Aligned_cols=321 Identities=25% Similarity=0.326 Sum_probs=243.6
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCCC
Q 010981 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPS 161 (496)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 161 (496)
.|+++|+||||+|+|.|+|||||+++||+|..|..| ++.|+|++|+|++.
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~---------~~~f~~~~SsT~~~--------------------- 52 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI---------HTYFHRELSSTYRD--------------------- 52 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc---------cccCCchhCcCccc---------------------
Confidence 799999999999999999999999999999877322 26899999999963
Q ss_pred CCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC------
Q 010981 162 GSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL------ 235 (496)
Q Consensus 162 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~------ 235 (496)
..|.|+++|++|+ +.|.+++|+|+|++.. +....+.|++.....+.+ ......|||||||++.+
T Consensus 53 --~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~------~~~~~~~~~~~~~~~~~~-~~~~~~dGIlGLg~~~l~~~~~~ 122 (364)
T cd05473 53 --LGKGVTVPYTQGS-WEGELGTDLVSIPKGP------NVTFRANIAAITESENFF-LNGSNWEGILGLAYAELARPDSS 122 (364)
T ss_pred --CCceEEEEECcce-EEEEEEEEEEEECCCC------ccceEEeeEEEeccccce-ecccccceeeeecccccccCCCC
Confidence 4689999999998 7999999999997531 112223456655444332 12235799999998754
Q ss_pred --chHHHHHhcCCCCceeEEeecC---------CCCccceEEeCCCC----CCCeEEeeCCCCCCceeEEEeEEEEccEE
Q 010981 236 --SVISQLASRGITPRVFSHCLKG---------QGNGGGILVLGEIL----EPSIVYSPLVPSKPHYNLNLHGITVNGQL 300 (496)
Q Consensus 236 --s~~~~l~~~g~i~~~FS~~l~~---------~~~~~G~l~~Gg~d----~~~l~~~pl~~~~~~w~v~l~~i~v~~~~ 300 (496)
+++++|.+|+.++++||+||.. ....+|+|+||++| .+++.|+|+. ...+|.|++++|+|+++.
T Consensus 123 ~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~-~~~~~~v~l~~i~vg~~~ 201 (364)
T cd05473 123 VEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR-EEWYYEVIILKLEVGGQS 201 (364)
T ss_pred CCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC-cceeEEEEEEEEEECCEe
Confidence 4778999999888899998853 12347999999998 4689999997 567999999999999998
Q ss_pred eecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCcc-----ccCCeEEEEe
Q 010981 301 LSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVS-----EIFPQVSLNF 375 (496)
Q Consensus 301 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~-----~~~P~i~f~f 375 (496)
+..+...+ ....+||||||+++++|+++++++.+++.++...... .......+.++|... ..+|+|+|+|
T Consensus 202 ~~~~~~~~---~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f 276 (364)
T cd05473 202 LNLDCKEY---NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDF--PDGFWLGSQLACWQKGTTPWEIFPKISIYL 276 (364)
T ss_pred cccccccc---cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccC--CccccCcceeecccccCchHhhCCcEEEEE
Confidence 86543322 1246999999999999999999999999987532110 011112234567533 2689999999
Q ss_pred cCC-----cEEEeCCCceEEEeeeeCCceEEE-EEEEecCCCceeeCceEEeeEEEEEECCCCEEEEEeCCCCCCcceee
Q 010981 376 EGG-----ASMVLKPEEYLIHLGFYDGAAMWC-IGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCSLSVNVSI 449 (496)
Q Consensus 376 ~gg-----~~~~i~p~~y~~~~~~~~~~~~~c-l~i~~~~~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~~c~~~~~~~~ 449 (496)
+|+ ..+.|+|++|+...........|. +++... .+.||||+.|||++|+|||++++|||||+++|......+.
T Consensus 277 ~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~-~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~~~~ 355 (364)
T cd05473 277 RDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQS-TNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDGFRT 355 (364)
T ss_pred ccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecC-CCceEEeeeeEcceEEEEECCCCEEeeEecccccccCcce
Confidence 642 468999999998643212233443 344433 4579999999999999999999999999999987665554
No 17
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.1e-50 Score=404.57 Aligned_cols=324 Identities=22% Similarity=0.399 Sum_probs=255.9
Q ss_pred eCCCCcE-EEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCC---------CC
Q 010981 89 LGSPPKE-FNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTA---------TQ 158 (496)
Q Consensus 89 vGtP~q~-~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~---------~~ 158 (496)
+|||-.+ +.|++||||+++||+|.+ .+|+|++.++|+++.|........ ..
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-------------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~ 62 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-------------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPG 62 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-------------------CCcCCCCccCcCChhhccccccCCCccccCCCCCC
Confidence 5788778 999999999999999863 347899999999999986543311 24
Q ss_pred CCCCCCCCeeeeE-eCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCch
Q 010981 159 CPSGSNQCSYSFE-YGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSV 237 (496)
Q Consensus 159 c~~~~~~~~~~~~-Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~ 237 (496)
|. ++.|.|... |++|+.+.|++++|+|+|+...++......+.++.|||+....... ....+|||||||++++|+
T Consensus 63 c~--~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~--~~~~~dGIlGLg~~~lSl 138 (362)
T cd05489 63 CG--NNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKG--LPPGAQGVAGLGRSPLSL 138 (362)
T ss_pred CC--CCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccC--CccccccccccCCCccch
Confidence 53 346888765 7799889999999999998644332111236689999998764221 123589999999999999
Q ss_pred HHHHHhcCCCCceeEEeecCCCCccceEEeCCCCC----------CCeEEeeCCCC---CCceeEEEeEEEEccEEeecC
Q 010981 238 ISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE----------PSIVYSPLVPS---KPHYNLNLHGITVNGQLLSID 304 (496)
Q Consensus 238 ~~~l~~~g~i~~~FS~~l~~~~~~~G~l~~Gg~d~----------~~l~~~pl~~~---~~~w~v~l~~i~v~~~~~~~~ 304 (496)
+.||..++..+++||+||.++.+.+|+|+||+.+. +++.|+||+.+ ..+|.|+|++|+||++.++++
T Consensus 139 ~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~ 218 (362)
T cd05489 139 PAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLN 218 (362)
T ss_pred HHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCC
Confidence 99999877667899999987655689999999873 67999999865 369999999999999999876
Q ss_pred ccccc--ccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCC--CCCCCceEEee----CCccccCCeEEEEec
Q 010981 305 PSAFA--ASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPT--MSKGKQCYLVS----NSVSEIFPQVSLNFE 376 (496)
Q Consensus 305 ~~~~~--~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~--~~~~~~~y~~~----c~~~~~~P~i~f~f~ 376 (496)
+..+. .....++||||||++++||+++|++|.+++.+++....... ....+.||... |+....+|+|+|+|+
T Consensus 219 ~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~ 298 (362)
T cd05489 219 PTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLD 298 (362)
T ss_pred chhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEe
Confidence 55443 22356899999999999999999999999998876432211 11126898753 333468999999997
Q ss_pred C-CcEEEeCCCceEEEeeeeCCceEEEEEEEecC---CCceeeCceEEeeEEEEEECCCCEEEEEeC
Q 010981 377 G-GASMVLKPEEYLIHLGFYDGAAMWCIGFEKSP---GGVSILGDLVLKDKIFVYDLARQRVGWANY 439 (496)
Q Consensus 377 g-g~~~~i~p~~y~~~~~~~~~~~~~cl~i~~~~---~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~ 439 (496)
| |++|.|+|++|+++.. ++..|++|...+ ...||||+.|||++|+|||++++|||||+.
T Consensus 299 g~g~~~~l~~~ny~~~~~----~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 299 GGGVNWTIFGANSMVQVK----GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CCCeEEEEcCCceEEEcC----CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 6 7999999999999853 245679998765 347999999999999999999999999974
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.5e-50 Score=391.18 Aligned_cols=260 Identities=36% Similarity=0.773 Sum_probs=217.4
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCeeEEeCC-CCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCC
Q 010981 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCS-SCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCP 160 (496)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~-~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~ 160 (496)
.|+++|+||||||++.|++||||+++||+|. .|..|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------- 38 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------- 38 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------------
Confidence 8999999999999999999999999999984 55544
Q ss_pred CCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCchHHH
Q 010981 161 SGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQ 240 (496)
Q Consensus 161 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~ 240 (496)
.|.|+++|+||+.++|.+++|+|+|+...+.. ...++.|||+..+.+.+.......+||||||++..++++|
T Consensus 39 ----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~----~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~q 110 (273)
T cd05475 39 ----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSR----AKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQ 110 (273)
T ss_pred ----cCccEeEeCCCCceEEEEEEEEEEEeecCCCc----ccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHH
Confidence 26799999988889999999999997543222 2567999999887665433445789999999999999999
Q ss_pred HHhcCCCCceeEEeecCCCCccceEEeCCCC--CCCeEEeeCCCC--CCceeEEEeEEEEccEEeecCcccccccCCCcE
Q 010981 241 LASRGITPRVFSHCLKGQGNGGGILVLGEIL--EPSIVYSPLVPS--KPHYNLNLHGITVNGQLLSIDPSAFAASNNRET 316 (496)
Q Consensus 241 l~~~g~i~~~FS~~l~~~~~~~G~l~~Gg~d--~~~l~~~pl~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 316 (496)
|+++++|+++||+||++ ..+|.|+||+.. .+++.|+|+..+ ..+|.|++.+|+|+++... .....+
T Consensus 111 l~~~~~i~~~Fs~~l~~--~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--------~~~~~~ 180 (273)
T cd05475 111 LASQGIIKNVIGHCLSS--NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--------GKGLEV 180 (273)
T ss_pred HHhcCCcCceEEEEccC--CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--------CCCceE
Confidence 99999998899999986 347999999654 367999999854 4799999999999998532 234679
Q ss_pred EEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCC---cEEEeCCCceEEEee
Q 010981 317 IVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGG---ASMVLKPEEYLIHLG 393 (496)
Q Consensus 317 iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg---~~~~i~p~~y~~~~~ 393 (496)
+|||||+++++|+++| +|+|+|+|+++ ++++|+|++|+++..
T Consensus 181 ivDTGTt~t~lp~~~y-----------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~ 225 (273)
T cd05475 181 VFDSGSSYTYFNAQAY-----------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE 225 (273)
T ss_pred EEECCCceEEcCCccc-----------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC
Confidence 9999999999999865 58899999543 799999999998742
Q ss_pred eeCCceEEEEEEEecC----CCceeeCceEEeeEEEEEECCCCEEEEEeCCC
Q 010981 394 FYDGAAMWCIGFEKSP----GGVSILGDLVLKDKIFVYDLARQRVGWANYDC 441 (496)
Q Consensus 394 ~~~~~~~~cl~i~~~~----~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~~c 441 (496)
++.+|+++.... ...||||+.|||++|+|||++++|||||+++|
T Consensus 226 ----~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 226 ----KGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ----CCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 334678776543 35799999999999999999999999999998
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=4.3e-50 Score=392.10 Aligned_cols=265 Identities=28% Similarity=0.462 Sum_probs=223.7
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCCCC
Q 010981 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPSG 162 (496)
Q Consensus 83 Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~ 162 (496)
|+++|+||||+|++.|+|||||+++||+|.+|..|..+. ...|++++|+|++..
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~-----~~~y~~~~Sst~~~~--------------------- 54 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG-----HKLYDPSKSSTAKLL--------------------- 54 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc-----CCcCCCccCccceec---------------------
Confidence 789999999999999999999999999999999886542 367999999999632
Q ss_pred CCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC-------
Q 010981 163 SNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL------- 235 (496)
Q Consensus 163 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~------- 235 (496)
..+.|.+.|++|+.+.|.+++|+|+|++.. +.++.||+++..++.+ .....++||||||++..
T Consensus 55 -~~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~-~~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 55 -PGATWSISYGDGSSASGIVYTDTVSIGGVE--------VPNQAIELATAVSASF-FSDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred -CCcEEEEEeCCCCeEEEEEEEEEEEECCEE--------ECCeEEEEEeecCccc-cccccccceeeeccccccccccCC
Confidence 357999999999878999999999998653 5678999999876632 23457899999999754
Q ss_pred --chHHHHHhcCCCCceeEEeecCCCCccceEEeCCCCC----CCeEEeeCCCCCCceeEEEeEEEEccEEeecCccccc
Q 010981 236 --SVISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFA 309 (496)
Q Consensus 236 --s~~~~l~~~g~i~~~FS~~l~~~~~~~G~l~~Gg~d~----~~l~~~pl~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 309 (496)
+++++|.+++. +++||+||.+ +..|+|+|||+|+ +++.|+|+.+...+|.|++++|+|+++....
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~------ 195 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWS------ 195 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceee------
Confidence 36788988875 7899999986 3479999999994 7999999986578999999999999874321
Q ss_pred ccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEEEeCCCceE
Q 010981 310 ASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYL 389 (496)
Q Consensus 310 ~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i~p~~y~ 389 (496)
..+..++|||||+++++|+++++++.+++.+.. +....++|.++|+.. +|+|+|+|
T Consensus 196 -~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~-------~~~~~~~~~~~C~~~--~P~i~f~~-------------- 251 (278)
T cd06097 196 -RSGFSAIADTGTTLILLPDAIVEAYYSQVPGAY-------YDSEYGGWVFPCDTT--LPDLSFAV-------------- 251 (278)
T ss_pred -cCCceEEeecCCchhcCCHHHHHHHHHhCcCCc-------ccCCCCEEEEECCCC--CCCEEEEE--------------
Confidence 245679999999999999999999998884321 233467899999853 89999998
Q ss_pred EEeeeeCCceEEEEEEEecCCCceeeCceEEeeEEEEEECCCCEEEEEe
Q 010981 390 IHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWAN 438 (496)
Q Consensus 390 ~~~~~~~~~~~~cl~i~~~~~~~~iLG~~fl~~~y~VfD~~~~~IGfa~ 438 (496)
.||||++|||++|+|||++++|||||+
T Consensus 252 ----------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ----------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ----------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999995
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.8e-49 Score=384.91 Aligned_cols=254 Identities=43% Similarity=0.833 Sum_probs=218.8
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCCC
Q 010981 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPS 161 (496)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 161 (496)
.|+++|+||||||++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 489999999999999999999999999975
Q ss_pred CCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCchHHHH
Q 010981 162 GSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQL 241 (496)
Q Consensus 162 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l 241 (496)
|.|.++|++|+.++|.+++|+|+|++.. ....++.|||+..+++ + .....+||||||+...++++||
T Consensus 31 ----~~~~~~Y~dg~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~--~~~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 31 ----CSYEYSYGDGSSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G--SFGGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred ----CceEeEeCCCceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C--ccCCCCEEEECCCCcccHHHHh
Confidence 2578899999889999999999998642 1256799999999876 2 2467899999999999999999
Q ss_pred HhcCCCCceeEEeecCC--CCccceEEeCCCCC---CCeEEeeCCCC---CCceeEEEeEEEEccEEeecCccccc--cc
Q 010981 242 ASRGITPRVFSHCLKGQ--GNGGGILVLGEILE---PSIVYSPLVPS---KPHYNLNLHGITVNGQLLSIDPSAFA--AS 311 (496)
Q Consensus 242 ~~~g~i~~~FS~~l~~~--~~~~G~l~~Gg~d~---~~l~~~pl~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~--~~ 311 (496)
..++ ++||+||.++ ...+|+|+||++|+ +++.|+|++.+ ..+|.|++++|+|+++.+.++.+.+. ..
T Consensus 98 ~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~ 174 (265)
T cd05476 98 GSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSD 174 (265)
T ss_pred hccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccC
Confidence 9887 8999999875 35689999999996 89999999865 57999999999999998865443222 23
Q ss_pred CCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEEEeCCCceEEE
Q 010981 312 NNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIH 391 (496)
Q Consensus 312 ~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i~p~~y~~~ 391 (496)
....++|||||+++++|++++ |+|+|+|+++..+.+++++|+.+
T Consensus 175 ~~~~ai~DTGTs~~~lp~~~~------------------------------------P~i~~~f~~~~~~~i~~~~y~~~ 218 (265)
T cd05476 175 GSGGTIIDSGTTLTYLPDPAY------------------------------------PDLTLHFDGGADLELPPENYFVD 218 (265)
T ss_pred CCCcEEEeCCCcceEcCcccc------------------------------------CCEEEEECCCCEEEeCcccEEEE
Confidence 456899999999999999877 78999996589999999999995
Q ss_pred eeeeCCceEEEEEEEecC-CCceeeCceEEeeEEEEEECCCCEEEEEeCCC
Q 010981 392 LGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDLARQRVGWANYDC 441 (496)
Q Consensus 392 ~~~~~~~~~~cl~i~~~~-~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~~c 441 (496)
. ..+.+|+++.... .+.||||++|||++|+|||++++|||||+++|
T Consensus 219 ~----~~~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 219 V----GEGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred C----CCCCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 3 2445778888763 67899999999999999999999999999999
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=5.4e-49 Score=388.11 Aligned_cols=272 Identities=27% Similarity=0.473 Sum_probs=232.6
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCCC
Q 010981 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPS 161 (496)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 161 (496)
.|+++|+||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 79999999999999999999999999996
Q ss_pred CCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC------
Q 010981 162 GSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL------ 235 (496)
Q Consensus 162 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~------ 235 (496)
.|++.|++|+.+.|.+++|+|+|++.. ..++.|||++... ..+||||||++..
T Consensus 31 -----~~~~~Y~~g~~~~G~~~~D~v~~g~~~--------~~~~~fg~~~~~~--------~~~GilGLg~~~~~~~~~~ 89 (295)
T cd05474 31 -----DFSISYGDGTSASGTWGTDTVSIGGAT--------VKNLQFAVANSTS--------SDVGVLGIGLPGNEATYGT 89 (295)
T ss_pred -----eeEEEeccCCcEEEEEEEEEEEECCeE--------ecceEEEEEecCC--------CCcceeeECCCCCcccccC
Confidence 367889998779999999999998653 5578999998742 3589999999876
Q ss_pred -----chHHHHHhcCCCC-ceeEEeecCCCCccceEEeCCCCC----CCeEEeeCCCCC-----CceeEEEeEEEEccEE
Q 010981 236 -----SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSK-----PHYNLNLHGITVNGQL 300 (496)
Q Consensus 236 -----s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~~Gg~d~----~~l~~~pl~~~~-----~~w~v~l~~i~v~~~~ 300 (496)
+++++|++||+|+ ++||+||.+.+...|.|+||++|+ +++.|+|+.... .+|.|++++|+++++.
T Consensus 90 ~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 90 GYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSS 169 (295)
T ss_pred CCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCC
Confidence 6999999999996 899999998655689999999984 679999998653 6899999999999987
Q ss_pred eecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcE
Q 010981 301 LSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGAS 380 (496)
Q Consensus 301 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~ 380 (496)
++.+. ......++|||||++++||++++++|.+++.+... .....|.++|..... |+|+|+| +|.+
T Consensus 170 ~~~~~----~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~--------~~~~~~~~~C~~~~~-p~i~f~f-~g~~ 235 (295)
T cd05474 170 GNTTL----LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYD--------SDEGLYVVDCDAKDD-GSLTFNF-GGAT 235 (295)
T ss_pred Ccccc----cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEc--------CCCcEEEEeCCCCCC-CEEEEEE-CCeE
Confidence 64311 13457899999999999999999999999977642 224678999997766 9999999 7899
Q ss_pred EEeCCCceEEEeee-eCCceEEEEEEEecCCCceeeCceEEeeEEEEEECCCCEEEEEeC
Q 010981 381 MVLKPEEYLIHLGF-YDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANY 439 (496)
Q Consensus 381 ~~i~p~~y~~~~~~-~~~~~~~cl~i~~~~~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~ 439 (496)
++|++++|+++... ......|+++|++.+...||||++|||++|+|||++++|||||++
T Consensus 236 ~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 236 ISVPLSDLVLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEHHHhEeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 99999999997532 123567889999875578999999999999999999999999985
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.5e-49 Score=395.98 Aligned_cols=298 Identities=30% Similarity=0.570 Sum_probs=252.4
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCC---CCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCC
Q 010981 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNC---PQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQ 158 (496)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C---~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~ 158 (496)
+|+++|+||||+|++.|++||||+++||++..|..| ... ..|+++.|+|++.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~-------~~y~~~~S~t~~~------------------ 55 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASS-------GFYNPSKSSTFSN------------------ 55 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTS-------C-BBGGGSTTEEE------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccc-------ccccccccccccc------------------
Confidence 599999999999999999999999999999999876 433 7999999999864
Q ss_pred CCCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCC-----
Q 010981 159 CPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQG----- 233 (496)
Q Consensus 159 c~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~----- 233 (496)
..+.+.+.|++|+ ++|.+++|+|+|++.. ..++.||.+....+.. ......+||||||++
T Consensus 56 -----~~~~~~~~y~~g~-~~G~~~~D~v~ig~~~--------~~~~~f~~~~~~~~~~-~~~~~~~GilGLg~~~~~~~ 120 (317)
T PF00026_consen 56 -----QGKPFSISYGDGS-VSGNLVSDTVSIGGLT--------IPNQTFGLADSYSGDP-FSPIPFDGILGLGFPSLSSS 120 (317)
T ss_dssp -----EEEEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEEESHH-HHHSSSSEEEE-SSGGGSGG
T ss_pred -----ceeeeeeeccCcc-cccccccceEeeeecc--------ccccceeccccccccc-cccccccccccccCCccccc
Confidence 3467999999999 9999999999998754 4568999999865431 123567999999974
Q ss_pred --CCchHHHHHhcCCCC-ceeEEeecCCCCccceEEeCCCCC----CCeEEeeCCCCCCceeEEEeEEEEccEEeecCcc
Q 010981 234 --DLSVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPS 306 (496)
Q Consensus 234 --~~s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~~Gg~d~----~~l~~~pl~~~~~~w~v~l~~i~v~~~~~~~~~~ 306 (496)
..+++++|+++|+|+ ++||++|.+.+...|.|+||++|+ +++.|+|+. ...+|.+.+++|.++++....
T Consensus 121 ~~~~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~-~~~~w~v~~~~i~i~~~~~~~--- 196 (317)
T PF00026_consen 121 STYPTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV-SSGYWSVPLDSISIGGESVFS--- 196 (317)
T ss_dssp GTS-SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS-STTTTEEEEEEEEETTEEEEE---
T ss_pred ccCCcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc-ccccccccccccccccccccc---
Confidence 356999999999996 899999998766789999999984 689999998 788999999999999983211
Q ss_pred cccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEEEeCCC
Q 010981 307 AFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPE 386 (496)
Q Consensus 307 ~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i~p~ 386 (496)
.....++||||++++++|++++++|++++.+.... ..|.++|+....+|.|+|+| ++.+++|+|+
T Consensus 197 ----~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~ 261 (317)
T PF00026_consen 197 ----SSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPS 261 (317)
T ss_dssp ----EEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHH
T ss_pred ----ccceeeecccccccccccchhhHHHHhhhcccccc----------eeEEEecccccccceEEEee-CCEEEEecch
Confidence 12345999999999999999999999999876432 77999999888899999999 7999999999
Q ss_pred ceEEEeeeeCCceEEEEEEEe---cC-CCceeeCceEEeeEEEEEECCCCEEEEEeC
Q 010981 387 EYLIHLGFYDGAAMWCIGFEK---SP-GGVSILGDLVLKDKIFVYDLARQRVGWANY 439 (496)
Q Consensus 387 ~y~~~~~~~~~~~~~cl~i~~---~~-~~~~iLG~~fl~~~y~VfD~~~~~IGfa~~ 439 (496)
+|+.+... .....|.++|.. .. ...+|||.+|||++|+|||++++|||||++
T Consensus 262 ~~~~~~~~-~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 262 DYIFKIED-GNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp HHEEEESS-TTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred Hhcccccc-cccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 99998654 233478899998 22 678999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.4e-45 Score=359.74 Aligned_cols=269 Identities=36% Similarity=0.674 Sum_probs=229.4
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCCCC
Q 010981 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPSG 162 (496)
Q Consensus 83 Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~ 162 (496)
|+++|.||||+|++.|++||||+++||+|..|..|..+... ...|++..|+++.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~---~~~~~~~~s~~~~----------------------- 54 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHP---RFKYDSSKSSTYK----------------------- 54 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCC---CCccCccCCceee-----------------------
Confidence 78999999999999999999999999999999987655210 1126777776663
Q ss_pred CCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC------Cc
Q 010981 163 SNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD------LS 236 (496)
Q Consensus 163 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~------~s 236 (496)
+..|.|.+.|++|+ +.|.+++|+|+|++.. ..++.|||+....+.+ .....+||||||+.. .+
T Consensus 55 ~~~~~~~~~Y~~g~-~~g~~~~D~v~~~~~~--------~~~~~fg~~~~~~~~~--~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 55 DTGCTFSITYGDGS-VTGGLGTDTVTIGGLT--------IPNQTFGCATSESGDF--SSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred cCCCEEEEEECCCe-EEEEEEEeEEEECCEE--------EeceEEEEEeccCCcc--cccccceEeecCCcccccccCCC
Confidence 56799999999987 7999999999998654 5679999999987632 346789999999988 78
Q ss_pred hHHHHHhcCCCC-ceeEEeecCC--CCccceEEeCCCCC----CCeEEeeCCCC-CCceeEEEeEEEEccEEeecCcccc
Q 010981 237 VISQLASRGITP-RVFSHCLKGQ--GNGGGILVLGEILE----PSIVYSPLVPS-KPHYNLNLHGITVNGQLLSIDPSAF 308 (496)
Q Consensus 237 ~~~~l~~~g~i~-~~FS~~l~~~--~~~~G~l~~Gg~d~----~~l~~~pl~~~-~~~w~v~l~~i~v~~~~~~~~~~~~ 308 (496)
++++|.++++|+ ++||+||.+. ....|.|+||++|+ +++.|+|+... ..+|.|.+++|.|+++.. .
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~------~ 197 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSV------I 197 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCcee------e
Confidence 999999999986 8999999985 35689999999994 78999999965 779999999999998741 1
Q ss_pred cccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCcCCCCCCCCceEEeeCCccccCCeEEEEecCCcEEEeCCCce
Q 010981 309 AASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEY 388 (496)
Q Consensus 309 ~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~~~c~~~~~~P~i~f~f~gg~~~~i~p~~y 388 (496)
.......++|||||++++||+++++++++++.+.... ...|+..+|.....+|+|+|+|
T Consensus 198 ~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~p~i~f~f------------- 256 (283)
T cd05471 198 SSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS--------SDGGYGVDCSPCDTLPDITFTF------------- 256 (283)
T ss_pred ecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc--------cCCcEEEeCcccCcCCCEEEEE-------------
Confidence 1234568999999999999999999999999877432 4577888998889999999999
Q ss_pred EEEeeeeCCceEEEEEEEecCCCceeeCceEEeeEEEEEECCCCEEEEEe
Q 010981 389 LIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWAN 438 (496)
Q Consensus 389 ~~~~~~~~~~~~~cl~i~~~~~~~~iLG~~fl~~~y~VfD~~~~~IGfa~ 438 (496)
.+|||++|||++|++||+++++||||+
T Consensus 257 -----------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -----------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -----------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=7e-30 Score=228.35 Aligned_cols=163 Identities=44% Similarity=0.774 Sum_probs=132.7
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCCCC
Q 010981 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPSG 162 (496)
Q Consensus 83 Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~ 162 (496)
|+++|.||||+|++.|+|||||+.+|++|. .+.|+|.+|+|++.++|++++|...... ...|...
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~--------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~ 65 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP--------------DPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCS 65 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET------------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC--------------CcccCCccCCcccccCCCCcchhhcccc-cccCCCC
Confidence 899999999999999999999999999981 3899999999999999999999866443 3445555
Q ss_pred CCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCchHHHHH
Q 010981 163 SNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLA 242 (496)
Q Consensus 163 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~ 242 (496)
+..|.|.+.|++++.+.|.+++|+++++...++. ....++.|||+....+.+ ...+||||||+.+.|++.||.
T Consensus 66 ~~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~----~~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 66 NNSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLF----YGADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp SSEEEEEEEETTTEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSS----TTEEEEEE-SSSTTSHHHHHH
T ss_pred cCcccceeecCCCccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCC----cCCCcccccCCCcccHHHHHH
Confidence 7899999999999999999999999999765433 236689999999998764 378999999999999999999
Q ss_pred hcCCCCceeEEeecC-CCCccceEEeCC
Q 010981 243 SRGITPRVFSHCLKG-QGNGGGILVLGE 269 (496)
Q Consensus 243 ~~g~i~~~FS~~l~~-~~~~~G~l~~Gg 269 (496)
++ ..++||+||.+ +....|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 88 55899999998 556789999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.91 E-value=1.3e-23 Score=187.84 Aligned_cols=149 Identities=38% Similarity=0.702 Sum_probs=119.9
Q ss_pred ceeEEEeEEEEccEEeecCcccccc-cCCCcEEEecccccccccHHHHHHHHHHHHHHhccCc----CCCCCCCCceEEe
Q 010981 286 HYNLNLHGITVNGQLLSIDPSAFAA-SNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSV----TPTMSKGKQCYLV 360 (496)
Q Consensus 286 ~w~v~l~~i~v~~~~~~~~~~~~~~-~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~----~~~~~~~~~~y~~ 360 (496)
+|.|+|.+|+||++.++++...|.. .....++|||||++++||+++|+++++++.+++.... .......+.||..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5899999999999999998887632 2356899999999999999999999999999987753 1334567899999
Q ss_pred eC----CccccCCeEEEEecCCcEEEeCCCceEEEeeeeCCceEEEEEEEec---CCCceeeCceEEeeEEEEEECCCCE
Q 010981 361 SN----SVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKS---PGGVSILGDLVLKDKIFVYDLARQR 433 (496)
Q Consensus 361 ~c----~~~~~~P~i~f~f~gg~~~~i~p~~y~~~~~~~~~~~~~cl~i~~~---~~~~~iLG~~fl~~~y~VfD~~~~~ 433 (496)
+. .....+|+|+|+|.||++++|+|++|+++.. ++..|++|.+. ..+..|||..+|++++++||++++|
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~----~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ 156 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS----PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGR 156 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC----TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeecc----CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCE
Confidence 87 3558999999999889999999999999863 45899999998 3788999999999999999999999
Q ss_pred EEEEe
Q 010981 434 VGWAN 438 (496)
Q Consensus 434 IGfa~ 438 (496)
|||++
T Consensus 157 igF~~ 161 (161)
T PF14541_consen 157 IGFAP 161 (161)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.87 E-value=1e-21 Score=163.84 Aligned_cols=108 Identities=38% Similarity=0.657 Sum_probs=90.4
Q ss_pred EEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCC-CCCCCCcCceecCCCccccCccCCCCCCCCCCC
Q 010981 85 TKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFF-DTSSSSTARIVSCSDPLCASEIQTTATQCPSGS 163 (496)
Q Consensus 85 ~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y-~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~~ 163 (496)
++|.||||||++.|+|||||+++||+|..|..|..+. .+.| +++.|++++ .
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~-----~~~~~~~~~sst~~-----------------------~ 52 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS-----HSSYDDPSASSTYS-----------------------D 52 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc-----ccccCCcCCCCCCC-----------------------C
Confidence 4799999999999999999999999999998776442 2455 999999985 3
Q ss_pred CCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeec
Q 010981 164 NQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGF 230 (496)
Q Consensus 164 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGL 230 (496)
..|.|.+.|++|+ +.|.+++|+|+|++.. ..++.|||+....+.+. .....+|||||
T Consensus 53 ~~~~~~~~Y~~g~-~~g~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~-~~~~~~GilGL 109 (109)
T cd05470 53 NGCTFSITYGTGS-LSGGLSTDTVSIGDIE--------VVGQAFGCATDEPGATF-LPALFDGILGL 109 (109)
T ss_pred CCcEEEEEeCCCe-EEEEEEEEEEEECCEE--------ECCEEEEEEEecCCccc-cccccccccCC
Confidence 5689999999997 7899999999998653 56799999999877542 23578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.92 E-value=3e-05 Score=62.25 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=60.5
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCCCC
Q 010981 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPS 161 (496)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 161 (496)
.|++++.|+. +++.+++|||++.+|+.......+.. .
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~~~l~~-----------------~------------------------ 38 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEELAERLGL-----------------P------------------------ 38 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHHHHHcCC-----------------C------------------------
Confidence 7899999996 99999999999999997642111110 0
Q ss_pred CCCCCeeeeEeCCCCeEEEEEEEEEEEEeeecCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCC
Q 010981 162 GSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQ 232 (496)
Q Consensus 162 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~ 232 (496)
........+...+|.........+.+++|+.. ..++.+........ ..+||||+.+
T Consensus 39 ~~~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~--------~~~~~~~v~d~~~~-------~~~gIlG~d~ 94 (96)
T cd05483 39 LTLGGKVTVQTANGRVRAARVRLDSLQIGGIT--------LRNVPAVVLPGDAL-------GVDGLLGMDF 94 (96)
T ss_pred ccCCCcEEEEecCCCccceEEEcceEEECCcE--------EeccEEEEeCCccc-------CCceEeChHH
Confidence 01224566777777766666668889998643 23344444333211 4699999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.87 E-value=0.046 Score=46.00 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=26.1
Q ss_pred eeEEEEEEeCCCCcEEEEEEEcCCCeeEEeC
Q 010981 81 WLYFTKVKLGSPPKEFNVQIDTGSDILWVTC 111 (496)
Q Consensus 81 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~ 111 (496)
+.|++++.|.. +++.+++|||++.+-+..
T Consensus 10 g~~~v~~~InG--~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 10 GHFYATGRVNG--RNVRFLVDTGATSVALNE 38 (121)
T ss_pred CeEEEEEEECC--EEEEEEEECCCCcEEcCH
Confidence 39999999987 899999999999998864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.38 E-value=0.13 Score=40.18 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=21.2
Q ss_pred EEEEeCCCCcEEEEEEEcCCCeeEEeCC
Q 010981 85 TKVKLGSPPKEFNVQIDTGSDILWVTCS 112 (496)
Q Consensus 85 ~~i~vGtP~q~~~v~~DTGSs~~wv~~~ 112 (496)
+++.|+. +++.+++|||++.+.+...
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRS 26 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHH
Confidence 3577876 8999999999998887643
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.02 E-value=0.17 Score=42.73 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=23.7
Q ss_pred CCceeeCceEEeeEEEEEECCCCEEEE
Q 010981 410 GGVSILGDLVLKDKIFVYDLARQRVGW 436 (496)
Q Consensus 410 ~~~~iLG~~fl~~~y~VfD~~~~~IGf 436 (496)
....|||..||+.+-.+.|+.+.+|-+
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 456799999999999999999998853
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.05 E-value=0.19 Score=39.83 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=25.3
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCeeEEeCC
Q 010981 83 YFTKVKLGSPPKEFNVQIDTGSDILWVTCS 112 (496)
Q Consensus 83 Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~ 112 (496)
|++++.|+. +++.+++||||+..++...
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHH
Confidence 578999999 9999999999999999764
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=91.97 E-value=1.4 Score=37.06 Aligned_cols=29 Identities=10% Similarity=0.360 Sum_probs=26.4
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCeeEEeCC
Q 010981 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCS 112 (496)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~ 112 (496)
.+++++.|+. +++.+++|||++..++...
T Consensus 16 ~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 16 MLYINVEING--VPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred EEEEEEEECC--EEEEEEEeCCCceEEeCHH
Confidence 8899999998 8999999999999998654
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=89.23 E-value=4.5 Score=34.67 Aligned_cols=29 Identities=34% Similarity=0.256 Sum_probs=26.2
Q ss_pred CCceeeCceEEeeEEEEEECCCCEEEEEe
Q 010981 410 GGVSILGDLVLKDKIFVYDLARQRVGWAN 438 (496)
Q Consensus 410 ~~~~iLG~~fl~~~y~VfD~~~~~IGfa~ 438 (496)
....|||.++|+.+..+-|..+++|-|..
T Consensus 103 ~~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 103 GYDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred ceeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 45689999999999999999999999864
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.29 E-value=1.3 Score=33.35 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=27.8
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCC
Q 010981 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSC 114 (496)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C 114 (496)
.+++++.||. +++..++|||++...|+..-+
T Consensus 8 ~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 8 LMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred EEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 9999999999 999999999999998876543
No 35
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.43 E-value=1.7 Score=34.79 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=23.6
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCeeEEeCC
Q 010981 84 FTKVKLGSPPKEFNVQIDTGSDILWVTCS 112 (496)
Q Consensus 84 ~~~i~vGtP~q~~~v~~DTGSs~~wv~~~ 112 (496)
+.+|.|.. +++.+++||||+.+-++..
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 56788888 8999999999999988764
No 36
>PF13650 Asp_protease_2: Aspartyl protease
Probab=77.52 E-value=3.1 Score=32.14 Aligned_cols=29 Identities=17% Similarity=0.472 Sum_probs=23.1
Q ss_pred EEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 010981 294 ITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 335 (496)
Q Consensus 294 i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 335 (496)
+.|||+.+ .++||||.+.+.+.++.++++
T Consensus 3 v~vng~~~-------------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------------EEEEcCCCCcEEECHHHHHHc
Confidence 56777654 489999999999999876555
No 37
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=77.46 E-value=3.6 Score=33.64 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.7
Q ss_pred CceeeCceEEeeEEEEEECCCCEE
Q 010981 411 GVSILGDLVLKDKIFVYDLARQRV 434 (496)
Q Consensus 411 ~~~iLG~~fl~~~y~VfD~~~~~I 434 (496)
...+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 478999999999999999987653
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=77.17 E-value=4.8 Score=33.70 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=26.9
Q ss_pred CCceeEEEeEEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 010981 284 KPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 335 (496)
Q Consensus 284 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 335 (496)
.++|.++ +.|||+.+ .++||||.+.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~-------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV-------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE-------------EEEEECCCCcEEcCHHHHHHc
Confidence 3466544 56788765 379999999999999876554
No 39
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=71.82 E-value=7 Score=29.27 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=23.6
Q ss_pred EEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 010981 294 ITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 335 (496)
Q Consensus 294 i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 335 (496)
+.|+|..+ .+++|||.+..+++.+.++.+
T Consensus 13 ~~I~g~~~-------------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------------EEEEeCCCcceecCHHHHHHh
Confidence 56777665 389999999999999877665
No 40
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=71.59 E-value=5.9 Score=31.08 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=24.5
Q ss_pred EEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 010981 293 GITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 335 (496)
Q Consensus 293 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 335 (496)
.+.|||+.+. +.+|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i~-------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-------------EEEcCCcceEEeCHHHHHHh
Confidence 3678888763 79999999999999877654
No 41
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=71.57 E-value=5.4 Score=31.28 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEeCCCCcEEEEEEEcCCCeeEEeCC
Q 010981 86 KVKLGSPPKEFNVQIDTGSDILWVTCS 112 (496)
Q Consensus 86 ~i~vGtP~q~~~v~~DTGSs~~wv~~~ 112 (496)
.+.|+. |.+.+++|||.+++-+...
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEccc
Confidence 466775 9999999999999999754
No 42
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=68.26 E-value=16 Score=33.35 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=50.7
Q ss_pred ceeEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCCCCCCCCCCCCCCCCCCCCcCceecCCCccccCccCCCCCCC
Q 010981 80 YWLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQC 159 (496)
Q Consensus 80 ~~~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c 159 (496)
++.|.++..|-. |++..++|||-+.+-+....-.. -.|+.+
T Consensus 103 ~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~R-----------lGid~~-------------------------- 143 (215)
T COG3577 103 DGHFEANGRVNG--KKVDFLVDTGATSVALNEEDARR-----------LGIDLN-------------------------- 143 (215)
T ss_pred CCcEEEEEEECC--EEEEEEEecCcceeecCHHHHHH-----------hCCCcc--------------------------
Confidence 349999999988 99999999999998886542110 223333
Q ss_pred CCCCCCCeeeeEeCCCCeEEEEEEEEEEEEeeec
Q 010981 160 PSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAIL 193 (496)
Q Consensus 160 ~~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~ 193 (496)
....++.+.-.+|...--.+-.|.|.||++.
T Consensus 144 ---~l~y~~~v~TANG~~~AA~V~Ld~v~IG~I~ 174 (215)
T COG3577 144 ---SLDYTITVSTANGRARAAPVTLDRVQIGGIR 174 (215)
T ss_pred ---ccCCceEEEccCCccccceEEeeeEEEccEE
Confidence 2334666677788754556668999998764
No 43
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=67.52 E-value=26 Score=27.49 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=17.8
Q ss_pred CCCcEEEecccccccccHHHHH
Q 010981 312 NNRETIVDSGTTLTYLVEEAFD 333 (496)
Q Consensus 312 ~~~~~iiDSGtt~~~lp~~~~~ 333 (496)
.+...+||||...+.+|....+
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 4567899999999999986443
No 44
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=67.00 E-value=10 Score=29.58 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=23.4
Q ss_pred EEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 010981 293 GITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 335 (496)
Q Consensus 293 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 335 (496)
.+.||++.+ .++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-------------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-------------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-------------EEEEECCCCcEEcCHHHHHHc
Confidence 366777665 489999999999999876554
No 45
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=65.64 E-value=22 Score=31.22 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=18.7
Q ss_pred CcEEEecccccccccHHHHHHHH
Q 010981 314 RETIVDSGTTLTYLVEEAFDPFV 336 (496)
Q Consensus 314 ~~~iiDSGtt~~~lp~~~~~~i~ 336 (496)
..++||||++....-.++.+.+-
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEeCCCccceeehhhHHhhC
Confidence 35899999999999998766554
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=64.38 E-value=9 Score=29.75 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=20.6
Q ss_pred EEEeCCCCcEEEEEEEcCCCeeEEeCC
Q 010981 86 KVKLGSPPKEFNVQIDTGSDILWVTCS 112 (496)
Q Consensus 86 ~i~vGtP~q~~~v~~DTGSs~~wv~~~ 112 (496)
.+.|.. +++.+++|||++.+-+...
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHH
Confidence 355665 8999999999999999754
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=63.43 E-value=9.1 Score=29.74 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=23.9
Q ss_pred EEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 010981 294 ITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 335 (496)
Q Consensus 294 i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 335 (496)
+.|||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-------------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------------EEEEECCCCeEEECHHHhhhc
Confidence 56788776 379999999999999887664
No 48
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=56.37 E-value=75 Score=31.91 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=34.4
Q ss_pred EeCCCCeEEEEEEEEEEEEeeecCCccc----cc-ccccEEEeeeeeccCCCCCCCCCcceeeecCCCC
Q 010981 171 EYGDGSGTSGSYIYDTLYFDAILGESLI----AN-STALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD 234 (496)
Q Consensus 171 ~Y~~g~~~~G~~~~D~v~i~~~~~~~~~----~~-~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~ 234 (496)
.|.+|. +-|-+.+-+|+|++.....+- .+ .....+-.|.......-......++||||+|.-.
T Consensus 83 ~F~sgy-tWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 83 QFASGY-TWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hccCcc-cccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 477776 569999999999976433210 00 0111222232222211112345689999999853
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=50.79 E-value=64 Score=26.24 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEeCCCC----cEEEEEEEcCCCeeE-Ee
Q 010981 85 TKVKLGSPP----KEFNVQIDTGSDILW-VT 110 (496)
Q Consensus 85 ~~i~vGtP~----q~~~v~~DTGSs~~w-v~ 110 (496)
+++.|..|. -++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 578888873 268999999998764 44
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=50.20 E-value=14 Score=29.30 Aligned_cols=25 Identities=20% Similarity=0.624 Sum_probs=20.2
Q ss_pred EEEEccEEeecCcccccccCCCcEEEecccccccccHH
Q 010981 293 GITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEE 330 (496)
Q Consensus 293 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~ 330 (496)
.|.++|+.+ .++||||+..+.++++
T Consensus 9 ~v~i~g~~i-------------~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 9 TVKINGKKI-------------KALLDTGADVSIISEK 33 (100)
T ss_dssp EEEETTEEE-------------EEEEETTBSSEEESSG
T ss_pred EEeECCEEE-------------EEEEecCCCcceeccc
Confidence 366677765 3899999999999985
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=45.40 E-value=36 Score=28.63 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=25.1
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCeeEEeCCCCCCCC
Q 010981 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCP 118 (496)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~~C~~C~ 118 (496)
..|++++|+. ++++.++|||...+-+...-+..|.
T Consensus 24 mLyI~~~ing--~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 24 MLYINCKING--VPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp --EEEEEETT--EEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred eEEEEEEECC--EEEEEEEeCCCCccccCHHHHHHcC
Confidence 8899999999 9999999999999888654333443
No 52
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=44.32 E-value=47 Score=30.40 Aligned_cols=36 Identities=33% Similarity=0.417 Sum_probs=27.8
Q ss_pred CCCceeEEEeEEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHH
Q 010981 283 SKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDP 334 (496)
Q Consensus 283 ~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~ 334 (496)
.++||.++ ..|||+.+. .++|||.|.+.++++....
T Consensus 102 ~~GHF~a~---~~VNGk~v~-------------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 102 RDGHFEAN---GRVNGKKVD-------------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCCcEEEE---EEECCEEEE-------------EEEecCcceeecCHHHHHH
Confidence 35677654 678998873 7999999999999975433
No 53
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=42.46 E-value=32 Score=28.96 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=22.4
Q ss_pred EEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHH
Q 010981 293 GITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDP 334 (496)
Q Consensus 293 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~ 334 (496)
.+++||+.+ .|+||||...+.++.+.+++
T Consensus 28 ~~~ing~~v-------------kA~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGVPV-------------KAFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTEEE-------------EEEEETT-SS-EEEHHHHHH
T ss_pred EEEECCEEE-------------EEEEeCCCCccccCHHHHHH
Confidence 367888876 38999999999999987766
No 54
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=39.76 E-value=39 Score=29.79 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=21.1
Q ss_pred EEEEeCCCCcEEEEEEEcCCCeeEEeCC
Q 010981 85 TKVKLGSPPKEFNVQIDTGSDILWVTCS 112 (496)
Q Consensus 85 ~~i~vGtP~q~~~v~~DTGSs~~wv~~~ 112 (496)
.++.++.-..+++++|||||..-.+...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 3444444559999999999998888654
No 55
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=38.33 E-value=35 Score=26.98 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.6
Q ss_pred cEEEecccccccccHHHHHHHH
Q 010981 315 ETIVDSGTTLTYLVEEAFDPFV 336 (496)
Q Consensus 315 ~~iiDSGtt~~~lp~~~~~~i~ 336 (496)
.+.+|||.+...+|...++.+.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4799999999999998776554
No 56
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=35.59 E-value=23 Score=36.32 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=25.2
Q ss_pred ccCCCchhhhhcccchhhHHHHHHHHHhhhhcccC
Q 010981 462 LNMSSSSIEMLFKVLPLSILALFLHSLSFMEFQFL 496 (496)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (496)
...+..++++|++|...++++ +-.|+.||.|+||
T Consensus 359 ~n~s~LstgaIaGIsvavvvv-VgglvGfLcWwf~ 392 (397)
T PF03302_consen 359 TNKSGLSTGAIAGISVAVVVV-VGGLVGFLCWWFI 392 (397)
T ss_pred cccccccccceeeeeehhHHH-HHHHHHHHhhhee
Confidence 345678899999999887663 3456678999886
No 57
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=30.01 E-value=33 Score=28.62 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.9
Q ss_pred EEEecccc-cccccHHHHHHHH
Q 010981 316 TIVDSGTT-LTYLVEEAFDPFV 336 (496)
Q Consensus 316 ~iiDSGtt-~~~lp~~~~~~i~ 336 (496)
.++|||-+ ++.+|+++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 48999999 9999998877654
No 58
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=22.86 E-value=62 Score=25.87 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=17.7
Q ss_pred CCchhhhhcccchhhHHHHHHHHHhhhhccc
Q 010981 465 SSSSIEMLFKVLPLSILALFLHSLSFMEFQF 495 (496)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (496)
+..+++++++++..+++. +..|+.|+.|+|
T Consensus 61 ~~ls~gaiagi~vg~~~~-v~~lv~~l~w~f 90 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAV-VGGLVGFLCWWF 90 (96)
T ss_pred CCcccccEEEEEeehhhH-HHHHHHHHhhee
Confidence 455667888888776643 233444455555
No 59
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=22.31 E-value=1.2e+02 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=25.3
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCeeEEeCC
Q 010981 82 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCS 112 (496)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~~DTGSs~~wv~~~ 112 (496)
.-.+.+.|.+ +...+++|+|++.-.|...
T Consensus 21 vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 21 VITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred eEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 6677899999 9999999999999888654
Done!