Query 010982
Match_columns 496
No_of_seqs 159 out of 245
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 14.3 2.1E+02 0.0071 23.2 4.5 22 114-135 41-62 (79)
2 3rko_A NADH-quinone oxidoreduc 9.6 1.6E+02 0.0056 26.5 2.7 12 223-234 70-81 (147)
3 2j3w_A Sedlin, trafficking pro 8.0 1.3E+02 0.0044 26.3 1.3 35 345-383 106-140 (142)
4 2our_A CAMP and CAMP-inhibited 7.5 2.2E+02 0.0074 28.5 2.8 62 321-389 261-324 (331)
5 1wy3_A Villin; structural prot 7.3 68 0.0023 22.6 -0.7 12 208-219 3-14 (35)
6 1und_A Advillin, P92; actin bi 7.1 70 0.0024 22.8 -0.7 12 208-219 5-16 (37)
7 2kv9_B Integrin beta-3; platel 7.0 1.4E+02 0.0048 24.4 0.9 24 112-135 35-58 (75)
8 2w7n_A TRFB transcriptional re 6.8 2.5E+02 0.0086 23.7 2.5 24 368-391 75-98 (101)
9 1jek_B ENV polyprotein; envelo 6.3 1.4E+02 0.0048 21.4 0.5 10 117-126 2-11 (36)
10 2ztb_A Crystal protein; beta-h 6.2 85 0.0029 31.0 -0.9 17 281-297 203-219 (252)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=14.28 E-value=2.1e+02 Score=23.22 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=16.2
Q ss_pred hhhhhhhhhhhcccccccCCCC
Q 010982 114 IRGWKKWEEETSTHDYEFSNDP 135 (496)
Q Consensus 114 ir~Wk~WE~e~~~~~~~~~~dp 135 (496)
-|.++++|+|-+....+..++|
T Consensus 41 rrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 41 RKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHhcccccCCCC
Confidence 6899999999876655544445
No 2
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=9.65 E-value=1.6e+02 Score=26.49 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=7.5
Q ss_pred HHHHHHHHhccc
Q 010982 223 TSFVVFLLLNVN 234 (496)
Q Consensus 223 ~~vvlFLLlnv~ 234 (496)
+++++|+++++.
T Consensus 70 LiAilFlIFDvE 81 (147)
T 3rko_A 70 LVAMFFVIFDVE 81 (147)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666665
No 3
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=8.04 E-value=1.3e+02 Score=26.34 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=24.7
Q ss_pred ccccccccchhhHHHHhhccccccccccHHHHHHHHHHH
Q 010982 345 LFLCSYITLPLYALVTQMGSQMKKSIFDEQTSKALKRWH 383 (496)
Q Consensus 345 Q~LCSY~TLPLYALVTQMGS~~K~~if~e~v~~aL~~W~ 383 (496)
++.+-|+.=|+| +.|..++-..|+++|.+.+++|.
T Consensus 106 ~~Y~~~v~NPfy----~~~~pI~s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 106 DLYIKFAMNPFY----EPNSPIRSSAFDRKVQFLGKKHL 140 (142)
T ss_dssp HHHHHHHHSTTC----CTTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCC----CCCCceecHHHHHHHHHHHHHhc
Confidence 344445556777 45777888888888888888873
No 4
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=7.52 E-value=2.2e+02 Score=28.51 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=41.8
Q ss_pred cCCC-cccccccc-ceehhhhhhhccccccccccchhhHHHHhhccccccccccHHHHHHHHHHHHHHHhh
Q 010982 321 FSLK-SCFHANFT-LAIMKVALGVGVLFLCSYITLPLYALVTQMGSQMKKSIFDEQTSKALKRWHMAVKKR 389 (496)
Q Consensus 321 fG~~-SCf~~~~~-~ii~Rl~~Gv~vQ~LCSY~TLPLYALVTQMGS~~K~~if~e~v~~aL~~W~~~akkk 389 (496)
.|.. |-+++... .-+++.=+|++ .|+.+|||..++++-..++. .-+++.+-++.|.+.++++
T Consensus 261 lgl~~sp~~DR~~~~~~~k~QigFi-----~~vv~Pl~~~l~~~~p~~~~--~~~~l~~N~~~W~~~~~~~ 324 (331)
T 2our_A 261 LGIQPIPMMDRDKKDEVPQGQLGFY-----NAVAIPCYTTLTQILPPTEP--LLKACRDNLSQWEKVIRGE 324 (331)
T ss_dssp TTCCCCGGGCGGGGGGHHHHHHHHH-----HHTHHHHHHHHHHHCGGGHH--HHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCccCccccccchHHHHHHH-----HHHHHHHHHHHHHHChhhHH--HHHHHHHHHHHHHHHHhCC
Confidence 3554 44444332 33666666654 48899999999988666553 3478999999998777654
No 5
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=7.29 E-value=68 Score=22.64 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=8.8
Q ss_pred hhccccceecch
Q 010982 208 EDDFKIVVGVSP 219 (496)
Q Consensus 208 EdDFk~VVGIS~ 219 (496)
++||+.|.|+|.
T Consensus 3 d~dF~~vFgmsr 14 (35)
T 1wy3_A 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 577777777774
No 6
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=7.15 E-value=70 Score=22.81 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=9.2
Q ss_pred hhccccceecch
Q 010982 208 EDDFKIVVGVSP 219 (496)
Q Consensus 208 EdDFk~VVGIS~ 219 (496)
++||+.|.|+|.
T Consensus 5 d~dF~~vFgmsr 16 (37)
T 1und_A 5 EQDFVSVFGITR 16 (37)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 578888888875
No 7
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=6.97 E-value=1.4e+02 Score=24.45 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=16.8
Q ss_pred hhhhhhhhhhhhhcccccccCCCC
Q 010982 112 LKIRGWKKWEEETSTHDYEFSNDP 135 (496)
Q Consensus 112 ~Kir~Wk~WE~e~~~~~~~~~~dp 135 (496)
---|.|++.|+|-++..++..++|
T Consensus 35 ~DrREyaKFEkEr~~akw~~~eNP 58 (75)
T 2kv9_B 35 HDRKEFAKFEEERARAKWDTANNP 58 (75)
T ss_dssp HHCHHHHHHHHHHHHGGGSSTTSH
T ss_pred HHHHHHHHHHHHHHHhccccccCC
Confidence 336799999999877665544444
No 8
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=6.80 E-value=2.5e+02 Score=23.69 Aligned_cols=24 Identities=17% Similarity=0.574 Sum_probs=18.6
Q ss_pred cccccHHHHHHHHHHHHHHHhhhc
Q 010982 368 KSIFDEQTSKALKRWHMAVKKRKK 391 (496)
Q Consensus 368 ~~if~e~v~~aL~~W~~~akkk~~ 391 (496)
..+.+++.+.-+++|.+.|+||..
T Consensus 75 ~v~lP~~~a~~v~~~~~~a~~~~~ 98 (101)
T 2w7n_A 75 TAVLPEHQAYIVRKWEADAKKKQE 98 (101)
T ss_dssp EEEECHHHHHHHHHHHHHHHC---
T ss_pred eeecCHHHHHHHHHHHHHHHHhhc
Confidence 456789999999999999988764
No 9
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=6.31 E-value=1.4e+02 Score=21.37 Aligned_cols=10 Identities=50% Similarity=1.391 Sum_probs=7.5
Q ss_pred hhhhhhhhcc
Q 010982 117 WKKWEEETST 126 (496)
Q Consensus 117 Wk~WE~e~~~ 126 (496)
|..||+|+..
T Consensus 2 WqqWereI~~ 11 (36)
T 1jek_B 2 WQQWEEEIEQ 11 (36)
T ss_dssp CHHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 7888888753
No 10
>2ztb_A Crystal protein; beta-hairpin, toxin; 2.38A {Bacillus thuringiensis serovar dakota}
Probab=6.20 E-value=85 Score=31.01 Aligned_cols=17 Identities=41% Similarity=0.847 Sum_probs=11.7
Q ss_pred ccCCCcccccCCChHHH
Q 010982 281 VQGSDQYFWFGRPQLVL 297 (496)
Q Consensus 281 V~psD~~FWF~rP~llL 297 (496)
|-|+++||||..++-||
T Consensus 203 v~~~gHyfWf~~v~~ll 219 (252)
T 2ztb_A 203 VGPGGHYFWFNPARDVL 219 (252)
T ss_dssp ETTTTEEEEEEEHHHHS
T ss_pred ccCCCcEEEeCCHHHHh
Confidence 44777888877776654
Done!