Query 010983
Match_columns 496
No_of_seqs 253 out of 841
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 97.0 0.44 1.5E-05 53.1 28.4 80 86-168 91-172 (724)
2 2qvt_A AVRL567-D; AVRL567-A, c 21.0 64 0.0022 27.3 3.0 13 464-476 136-149 (150)
3 4h62_V Mediator of RNA polymer 10.2 59 0.002 20.3 -0.0 9 404-412 3-11 (31)
4 3p5n_A RIBU, riboflavin uptake 5.5 9.7E+02 0.033 21.1 6.0 33 200-232 101-133 (189)
5 4b4a_A TATC, SEC-independent p 5.1 1.4E+03 0.049 21.2 7.1 51 259-324 58-108 (249)
6 3no8_A BTB/POZ domain-containi 4.9 1E+02 0.0035 28.0 -1.2 18 407-424 17-34 (176)
7 1lqb_D HIF-1 alpha, hypoxia-in 4.8 2.5E+02 0.0087 18.3 1.0 14 28-41 13-26 (34)
8 3gbw_A E3 ubiquitin-protein li 4.0 2.1E+02 0.0073 25.5 0.2 17 406-422 7-23 (164)
9 3lzq_A P19 protein; copper bin 3.7 3.1E+02 0.01 24.4 1.0 20 393-412 116-144 (159)
10 1ifr_A Lamin A/C; immunoglobul 3.2 9.7E+02 0.033 19.8 3.7 39 444-484 32-71 (121)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=96.96 E-value=0.44 Score=53.06 Aligned_cols=80 Identities=9% Similarity=-0.083 Sum_probs=47.4
Q ss_pred HHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhhHHHHhcCC--ccchhHHHHHHHHHH
Q 010983 86 VMSFLHLPKTHGLIAVRLALGCITLSTLRFFRAQVRYKFGSQVEAFFVILTAFQFHLLFYCTR--PLPNILALGIVNLAY 163 (496)
Q Consensus 86 l~~~lg~~~~~~~~~~Rl~lgl~s~~~~~~~~~~i~~~~g~~~a~~~lll~~~s~~~~~~ssR--tLpNsfa~~l~~~al 163 (496)
+.+.+|.+. ..+.+.+-+++++++-...+-..++..|+.+|....++.+.++...+-+.. .=.+++|..+.++++
T Consensus 91 l~~i~g~sl---~~v~~~lp~ifg~L~vi~~yll~~el~~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~ 167 (724)
T 3rce_A 91 LYSILPFSF---ESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLIL 167 (724)
T ss_dssp HHHSCSSCH---HHHHHHHHHHHGGGGHHHHHHHHHHTTCHHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHH
T ss_pred HHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 344566653 345555556666555555554455556667788888888888874332222 233466777777777
Q ss_pred HHHhc
Q 010983 164 GFWLK 168 (496)
Q Consensus 164 ~~~l~ 168 (496)
+.|.+
T Consensus 168 ~~~i~ 172 (724)
T 3rce_A 168 LTFIR 172 (724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 2
>2qvt_A AVRL567-D; AVRL567-A, crystallization, molecular replacement, plant disease resistance, , unknown function; 2.26A {Melampsora lini}
Probab=20.95 E-value=64 Score=27.31 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=9.4
Q ss_pred CCCCC-ceeeecCe
Q 010983 464 LRFPP-FLLIKEPK 476 (496)
Q Consensus 464 ~~~~~-~~~~~~~~ 476 (496)
+++|| |+|+.-||
T Consensus 136 ~n~p~yikiklvpk 149 (150)
T 2qvt_A 136 PNFPDYIKIKLVPK 149 (150)
T ss_dssp TTSCCEEEEEEEEC
T ss_pred CCCCcceEEEeccC
Confidence 45777 88888775
No 3
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=10.17 E-value=59 Score=20.29 Aligned_cols=9 Identities=44% Similarity=0.766 Sum_probs=1.5
Q ss_pred CCccccccc
Q 010983 404 MNGISRFCE 412 (496)
Q Consensus 404 ~tGvsrF~~ 412 (496)
-+|||||.|
T Consensus 3 gsgvtrfde 11 (31)
T 4h62_V 3 GSGVTRFDE 11 (31)
T ss_dssp -------CH
T ss_pred CCccccccH
Confidence 469999986
No 4
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=5.48 E-value=9.7e+02 Score=21.08 Aligned_cols=33 Identities=6% Similarity=-0.010 Sum_probs=15.9
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010983 200 LLLTKSISLWKALKCCIGMVLLSVGLTVLVDSI 232 (496)
Q Consensus 200 ~l~~~~~~~~~~l~~~i~~~l~~l~~~v~iDs~ 232 (496)
.+++|+.+.++.+...+.+.++.....+..+++
T Consensus 101 ~~y~k~~~~~~~~~~~i~G~~~~~i~~~~~n~~ 133 (189)
T 3p5n_A 101 AIYKNKRSTKSLITGLIIATIVMTIVLSILNYF 133 (189)
T ss_dssp HHHSSSCSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555455555443344444444444555554
No 5
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=5.13 E-value=1.4e+03 Score=21.20 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=31.1
Q ss_pred ccchHHHHHhhHhHHhhhhHHHHHHHHhhhcccchhHHHHHHHHHHhccCCcccchhhhhhhhHHH
Q 010983 259 THSFHWYFTSALPRSLLAAYPLCFLGALLDRRVLPFVIPVFTFVLLYSKLPHKELRFIISSVPIFN 324 (496)
Q Consensus 259 t~P~~~Yf~~~lP~~l~~~lpl~~~g~~~~~r~~~ll~~~l~~v~v~SllpHKE~RFI~p~~Pll~ 324 (496)
+||+.-|++..+-..+..+.|..+.-. |-++---+-.||-|+..|.++.-.
T Consensus 58 ~e~f~~~lkvs~~~g~~~a~P~ilyQi---------------w~Fi~PgLy~~Err~~~~~~~~s~ 108 (249)
T 4b4a_A 58 TEPLFILIKISLAVGFIIASPVILYQF---------------WRFIEPALYSHEKRAFIPLLLGSI 108 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHTTTTSCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhccccHhHHHHHHHHHHHHH
Confidence 678888888776554455667655542 223333345667788877776544
No 6
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2, PAM-highwire-RPM-1 domain, toposis regulation, protein structure initiative; 2.20A {Homo sapiens}
Probab=4.94 E-value=1e+02 Score=27.99 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.0
Q ss_pred cccccccCCCceeccCCC
Q 010983 407 ISRFCENDFPWRYSKEES 424 (496)
Q Consensus 407 vsrF~~~~~~w~y~K~e~ 424 (496)
|+||++.+..|.|+++.|
T Consensus 17 v~RFqs~~~~WgYsg~~D 34 (176)
T 3no8_A 17 INRFQQVESRWGYSGTSD 34 (176)
T ss_dssp EECCSEEEEEECCSSCCE
T ss_pred cccccccCCCCccCCCcc
Confidence 589998777899998754
No 7
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=4.85 E-value=2.5e+02 Score=18.27 Aligned_cols=14 Identities=21% Similarity=0.764 Sum_probs=11.7
Q ss_pred HhCCCCCCCCcccc
Q 010983 28 LAMPYTKVEESFNV 41 (496)
Q Consensus 28 ~~~pyt~~DEsFn~ 41 (496)
..+||..-||-||.
T Consensus 13 mLAPYIpMddDFqL 26 (34)
T 1lqb_D 13 MLAPYIPMDDDFQL 26 (34)
T ss_pred HhcCccccCccccc
Confidence 46799999999985
No 8
>3gbw_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, protein associated with MYC, PAM, RPM-1, PHR domain, structural genomics, PSI-2; HET: MSE; 1.32A {Mus musculus}
Probab=3.95 E-value=2.1e+02 Score=25.52 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.8
Q ss_pred ccccccccCCCceeccC
Q 010983 406 GISRFCENDFPWRYSKE 422 (496)
Q Consensus 406 GvsrF~~~~~~w~y~K~ 422 (496)
=|+||++.+..|.|+.+
T Consensus 7 ~v~RF~s~~~~W~Y~g~ 23 (164)
T 3gbw_A 7 VVNRFESHGGGWGYSAH 23 (164)
T ss_dssp EEECEEEECSCBCCCTT
T ss_pred EEecccccCCCcccCCC
Confidence 37899988888999998
No 9
>3lzq_A P19 protein; copper binding, iron transport, iron uptake, P19 delition, T protein; 1.41A {Campylobacter jejuni} PDB: 3lzn_A 3lzo_A 3lzp_A 3lzl_A 3lzr_A
Probab=3.70 E-value=3.1e+02 Score=24.41 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=15.1
Q ss_pred ceeEEeecCC---------CCCccccccc
Q 010983 393 EQWVHIDPYS---------AMNGISRFCE 412 (496)
Q Consensus 393 ~~~vhid~~a---------~~tGvsrF~~ 412 (496)
.++++|+.++ ..|||.+|.|
T Consensus 116 ~v~~~I~pP~~~~~~rHtDkeTGvg~w~e 144 (159)
T 3lzq_A 116 ELTFYISNPEKQGFGRHVDEETGVGKWFE 144 (159)
T ss_dssp EEEEEEECGGGGTCEEECSTTTCCCCCCC
T ss_pred EEEEEECCccccccceecccccCcccccC
Confidence 4788888887 4688888775
No 10
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=3.23 E-value=9.7e+02 Score=19.85 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=28.1
Q ss_pred CCCCeeEEEeecCccccccCCCCCC-ceeeecCeEEEeccCC
Q 010983 444 LVEGYKCLFSMDGFSRVRPQLRFPP-FLLIKEPKVYVHGNIK 484 (496)
Q Consensus 444 ~~~~~~~~~~~~~f~~i~~~~~~~~-~~~~~~~~~~~~~~~~ 484 (496)
+.++|.+.+.++|-.+ ....||+ ..++-..++.|+.+..
T Consensus 32 ~L~gW~l~r~v~~~~~--~~y~Fp~~~~L~pg~~vtIws~~~ 71 (121)
T 1ifr_A 32 SMGNWQIKRQNGDDPL--LTYRFPPKFTLKAGQVVTIWAAGA 71 (121)
T ss_dssp ECTTCEEEEEETTSCC--EEEECCSSCEECTTCEEEEEETTS
T ss_pred ccCCCEEEEEcCCCcc--EEEEeCCCcEECCCCEEEEEeCCC
Confidence 3579999999887433 3456887 7777777888877643
Done!