Query 010983
Match_columns 496
No_of_seqs 253 out of 841
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 18:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010983.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010983hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 14.6 1.2E+02 0.0086 26.7 6.0 16 363-378 73-88 (248)
2 d1t1ja_ c.23.14.2 (A:) Hypothe 5.1 70 0.0051 24.7 0.0 11 28-38 7-17 (119)
3 d2fpwa1 c.108.1.19 (A:3-163) H 4.0 2.2E+02 0.016 22.5 2.5 15 371-385 31-46 (161)
4 d1wnaa1 d.319.1.1 (A:1-127) Hy 3.6 1.5E+02 0.011 23.0 1.0 18 370-387 65-83 (127)
5 d1uaza_ f.13.1.1 (A:) Archaerh 3.6 4.4E+02 0.032 22.2 4.4 30 305-334 37-66 (236)
6 d1bpoa1 a.118.1.4 (A:331-487) 3.5 2.8E+02 0.021 22.4 2.7 22 366-387 21-44 (157)
7 d1np7a1 a.99.1.1 (A:205-483) C 3.2 1.4E+02 0.01 26.2 0.4 18 368-385 4-23 (279)
8 d1oedb_ f.36.1.1 (B:) Acetylch 3.0 4.7E+02 0.034 21.4 4.0 15 360-374 234-248 (250)
9 d1zfda_ g.37.1.1 (A:) SWI5 zin 3.0 1.8E+02 0.013 17.1 0.7 6 491-496 6-11 (32)
10 d2o2xa1 c.108.1.19 (A:8-216) H 2.9 1.4E+02 0.01 25.0 0.1 28 372-409 50-78 (209)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=14.62 E-value=1.2e+02 Score=26.69 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=12.1
Q ss_pred HHHHHhhcCCCchHHH
Q 010983 363 VTFMASYENYPSGYAL 378 (496)
Q Consensus 363 ~~~~~s~~NYpgg~al 378 (496)
...+++..||-.|+-+
T Consensus 73 yT~~iaFTNy~tgh~l 88 (248)
T d2r6gf1 73 CTIAIAFTNYSSTNQL 88 (248)
T ss_dssp HHHHGGGBCCSSTTCB
T ss_pred eEEEEEEEEcCCCccc
Confidence 3467899999999443
No 2
>d1t1ja_ c.23.14.2 (A:) Hypothetical protein PA1492 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.06 E-value=70 Score=24.72 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=9.2
Q ss_pred HhCCCCCCCCc
Q 010983 28 LAMPYTKVEES 38 (496)
Q Consensus 28 ~~~pyt~~DEs 38 (496)
+.|||+|+|+.
T Consensus 7 lacpys~~d~~ 17 (119)
T d1t1ja_ 7 LACPYSHADAE 17 (119)
T ss_dssp EECCCCCSSHH
T ss_pred EECCCCCCcHH
Confidence 57999999875
No 3
>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}
Probab=3.96 E-value=2.2e+02 Score=22.46 Aligned_cols=15 Identities=27% Similarity=0.177 Sum_probs=12.6
Q ss_pred CCCch-HHHHHHHHhc
Q 010983 371 NYPSG-YALKYLHQIG 385 (496)
Q Consensus 371 NYpgg-~al~~lh~~~ 385 (496)
=|||. ++++.|++.+
T Consensus 31 ~~pgv~e~L~~L~~~g 46 (161)
T d2fpwa1 31 FEPGVIPQLLKLQKAG 46 (161)
T ss_dssp BCTTHHHHHHHHHHTT
T ss_pred ECccHHHHHHHHHHcC
Confidence 38998 9999999865
No 4
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805) {Thermus thermophilus [TaxId: 274]}
Probab=3.63 E-value=1.5e+02 Score=22.98 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=14.5
Q ss_pred cCCCch-HHHHHHHHhccC
Q 010983 370 ENYPSG-YALKYLHQIGHL 387 (496)
Q Consensus 370 ~NYpgg-~al~~lh~~~~~ 387 (496)
-.||+| +|++.|-+...+
T Consensus 65 Pafp~G~~ALaELv~wl~~ 83 (127)
T d1wnaa1 65 PAFPGGEEALSELVGLLLA 83 (127)
T ss_dssp TTSTTHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 478999 999999887654
No 5
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=3.60 E-value=4.4e+02 Score=22.19 Aligned_cols=30 Identities=20% Similarity=-0.036 Sum_probs=19.8
Q ss_pred hccCCcccchhhhhhhhHHHHHHHHHHHHH
Q 010983 305 YSKLPHKELRFIISSVPIFNLSAAVAASRI 334 (496)
Q Consensus 305 ~SllpHKE~RFI~p~~Pll~l~aA~~~~~l 334 (496)
..-.+.||+|..+.+-.+++..||..=-++
T Consensus 37 ~~~~~~~~~r~~~~~~~lIt~IAa~~Y~~M 66 (236)
T d1uaza_ 37 GWGVTDKEAREYYSITILVPGIASAAYLSM 66 (236)
T ss_dssp HTTCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCcceeeeeHHHHHHHHHHHHHHHH
Confidence 344567788877777777777776555444
No 6
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.53 E-value=2.8e+02 Score=22.45 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=17.1
Q ss_pred HHhhcCCCchH--HHHHHHHhccC
Q 010983 366 MASYENYPSGY--ALKYLHQIGHL 387 (496)
Q Consensus 366 ~~s~~NYpgg~--al~~lh~~~~~ 387 (496)
.++..|+||.| ..+++|++...
T Consensus 21 lA~r~~LpGAd~l~~~~F~~lf~~ 44 (157)
T d1bpoa1 21 MAVRNNLAGAEELFARKFNALFAQ 44 (157)
T ss_dssp HHHHTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHhcCCCChHHHHHHHHHHHHHc
Confidence 46899999996 66788887543
No 7
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=3.20 E-value=1.4e+02 Score=26.19 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.0
Q ss_pred hhcCCCch--HHHHHHHHhc
Q 010983 368 SYENYPSG--YALKYLHQIG 385 (496)
Q Consensus 368 s~~NYpgg--~al~~lh~~~ 385 (496)
|..++||| +|+++|.+..
T Consensus 4 s~~~f~gGe~~Al~~L~~Fl 23 (279)
T d1np7a1 4 SVLAFQGGETAGLARLQDYF 23 (279)
T ss_dssp SSCCCCCSHHHHHHHHHHHH
T ss_pred ccCCCCChHHHHHHHHHHHH
Confidence 46789999 8999999864
No 8
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.04 E-value=4.7e+02 Score=21.44 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=8.2
Q ss_pred HHHHHHHHhhcCCCc
Q 010983 360 CTAVTFMASYENYPS 374 (496)
Q Consensus 360 ~s~~~~~~s~~NYpg 374 (496)
.++..+....+|+|.
T Consensus 234 ~t~~i~l~ap~~~~~ 248 (250)
T d1oedb_ 234 GTFSIFLDASHNVPP 248 (250)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCcccCCc
Confidence 344444555667764
No 9
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.96 E-value=1.8e+02 Score=17.08 Aligned_cols=6 Identities=50% Similarity=1.348 Sum_probs=3.8
Q ss_pred cCCCCC
Q 010983 491 KNWPGC 496 (496)
Q Consensus 491 ~~~~~~ 496 (496)
=.||||
T Consensus 6 C~~pgC 11 (32)
T d1zfda_ 6 CDHPGC 11 (32)
T ss_dssp CCCTTC
T ss_pred CcCCCC
Confidence 357777
No 10
>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}
Probab=2.95 E-value=1.4e+02 Score=24.97 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=0.0
Q ss_pred CCch-HHHHHHHHhccCCCCCCceeEEeecCCCCCcccc
Q 010983 372 YPSG-YALKYLHQIGHLASNTEEQWVHIDPYSAMNGISR 409 (496)
Q Consensus 372 Ypgg-~al~~lh~~~~~~~~~~~~~vhid~~a~~tGvsr 409 (496)
|||. +++++|++.+ +.+.+.+=|.|++|
T Consensus 50 ~pgv~e~L~~L~~~G----------~~l~IvTNQ~gi~~ 78 (209)
T d2o2xa1 50 RPQMLPAIATANRAG----------IPVVVVTNQSGIAR 78 (209)
T ss_dssp CGGGHHHHHHHHHHT----------CCEEEEEECHHHHT
T ss_pred cccHHHHHHHHHhhC----------CeEEEecccccchh
Done!