Query 010985
Match_columns 496
No_of_seqs 429 out of 3850
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:48:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 2.2E-98 5E-103 727.3 41.8 423 61-490 3-427 (428)
2 PLN00043 elongation factor 1-a 100.0 3.1E-86 6.8E-91 682.5 49.7 429 61-494 3-434 (447)
3 PTZ00141 elongation factor 1- 100.0 2.2E-84 4.8E-89 669.4 51.7 428 61-493 3-433 (446)
4 KOG0459 Polypeptide release fa 100.0 5.1E-85 1.1E-89 625.2 33.0 428 58-490 72-500 (501)
5 KOG0458 Elongation factor 1 al 100.0 7E-83 1.5E-87 639.0 37.3 427 59-490 171-602 (603)
6 PRK12317 elongation factor 1-a 100.0 3.2E-80 6.9E-85 641.0 50.5 417 62-492 3-423 (425)
7 TIGR00483 EF-1_alpha translati 100.0 5.1E-79 1.1E-83 631.7 50.7 421 61-492 3-425 (426)
8 PRK05124 cysN sulfate adenylyl 100.0 1.5E-75 3.3E-80 608.1 47.9 410 61-490 23-438 (474)
9 COG2895 CysN GTPases - Sulfate 100.0 7.5E-76 1.6E-80 554.7 37.7 409 61-490 2-416 (431)
10 TIGR02034 CysN sulfate adenyly 100.0 2.4E-75 5.1E-80 598.3 44.7 400 66-486 1-406 (406)
11 PRK05506 bifunctional sulfate 100.0 7.6E-72 1.7E-76 603.2 48.7 412 61-493 20-437 (632)
12 PLN03126 Elongation factor Tu; 100.0 3.3E-67 7.1E-72 542.8 44.0 389 61-490 77-477 (478)
13 PRK12735 elongation factor Tu; 100.0 3.3E-66 7.2E-71 529.5 46.0 380 60-490 7-395 (396)
14 CHL00071 tufA elongation facto 100.0 2.8E-66 6E-71 532.3 45.5 390 61-491 8-409 (409)
15 PRK00049 elongation factor Tu; 100.0 9E-66 2E-70 525.9 46.4 379 61-490 8-395 (396)
16 PRK12736 elongation factor Tu; 100.0 4.3E-65 9.3E-70 521.0 45.2 377 61-490 8-393 (394)
17 TIGR00485 EF-Tu translation el 100.0 3.3E-64 7.1E-69 515.3 44.8 377 61-490 8-393 (394)
18 PLN03127 Elongation factor Tu; 100.0 8E-64 1.7E-68 515.5 45.3 379 59-490 55-446 (447)
19 COG0050 TufB GTPases - transla 100.0 3.3E-59 7.2E-64 431.0 31.8 379 59-490 6-393 (394)
20 KOG0460 Mitochondrial translat 100.0 6.2E-60 1.3E-64 443.6 25.4 382 58-491 47-438 (449)
21 PTZ00327 eukaryotic translatio 100.0 1.3E-55 2.8E-60 453.1 39.0 346 61-488 30-451 (460)
22 PRK10512 selenocysteinyl-tRNA- 100.0 1.3E-53 2.9E-58 454.5 39.3 339 66-494 1-345 (614)
23 COG5258 GTPBP1 GTPase [General 100.0 3.1E-53 6.8E-58 403.9 31.1 379 57-489 109-526 (527)
24 PRK04000 translation initiatio 100.0 1.8E-51 3.9E-56 421.7 39.0 343 61-486 5-410 (411)
25 TIGR03680 eif2g_arch translati 100.0 2E-51 4.4E-56 421.8 39.1 341 63-486 2-405 (406)
26 TIGR00475 selB selenocysteine- 100.0 3E-50 6.5E-55 427.9 40.7 335 66-489 1-338 (581)
27 KOG0463 GTP-binding protein GP 100.0 9.7E-52 2.1E-56 392.2 22.9 380 62-495 130-552 (641)
28 COG3276 SelB Selenocysteine-sp 100.0 3.3E-48 7.1E-53 379.9 31.7 336 67-492 2-342 (447)
29 KOG1143 Predicted translation 100.0 1.5E-45 3.3E-50 349.8 24.4 378 62-491 164-584 (591)
30 KOG0052 Translation elongation 100.0 2.7E-46 6E-51 362.3 11.9 370 61-494 3-376 (391)
31 COG5257 GCD11 Translation init 100.0 1E-40 2.2E-45 312.2 32.2 343 63-488 8-413 (415)
32 TIGR01394 TypA_BipA GTP-bindin 100.0 1.6E-39 3.6E-44 344.9 28.6 278 66-378 2-289 (594)
33 cd01883 EF1_alpha Eukaryotic e 100.0 7.2E-39 1.6E-43 302.8 23.2 218 67-287 1-218 (219)
34 PRK10218 GTP-binding protein; 100.0 7.8E-37 1.7E-41 323.8 28.2 279 63-378 3-293 (607)
35 cd04166 CysN_ATPS CysN_ATPS su 100.0 2.6E-37 5.7E-42 289.9 21.3 207 67-287 1-207 (208)
36 TIGR01393 lepA GTP-binding pro 100.0 1.3E-36 2.8E-41 323.7 29.0 267 64-379 2-279 (595)
37 PRK05433 GTP-binding protein L 100.0 1.5E-36 3.3E-41 323.4 28.2 268 63-379 5-283 (600)
38 COG1217 TypA Predicted membran 100.0 3E-36 6.5E-41 294.4 27.4 281 63-379 3-294 (603)
39 KOG0461 Selenocysteine-specifi 100.0 9.3E-37 2E-41 287.5 22.3 346 65-464 7-380 (522)
40 KOG0462 Elongation factor-type 100.0 5.1E-37 1.1E-41 305.5 21.0 267 62-377 57-332 (650)
41 COG0481 LepA Membrane GTPase L 100.0 1.8E-35 4E-40 289.8 25.6 268 61-377 5-283 (603)
42 cd01884 EF_Tu EF-Tu subfamily. 100.0 2E-34 4.2E-39 266.4 19.9 192 64-286 1-193 (195)
43 PRK00007 elongation factor G; 100.0 1.1E-31 2.3E-36 292.7 29.0 281 62-377 7-394 (693)
44 PRK07560 elongation factor EF- 100.0 6E-32 1.3E-36 296.3 25.8 285 63-377 18-375 (731)
45 PRK05306 infB translation init 100.0 2E-31 4.3E-36 288.4 27.6 250 61-375 286-542 (787)
46 TIGR00487 IF-2 translation ini 100.0 3.2E-31 7E-36 280.8 28.2 250 61-374 83-339 (587)
47 PRK12739 elongation factor G; 100.0 2E-31 4.2E-36 290.9 27.2 272 62-377 5-391 (691)
48 COG0480 FusA Translation elong 100.0 7E-31 1.5E-35 279.9 27.4 272 62-377 7-392 (697)
49 PRK00741 prfC peptide chain re 100.0 1.2E-30 2.7E-35 273.8 27.0 280 63-377 8-380 (526)
50 TIGR00484 EF-G translation elo 100.0 1.9E-30 4.2E-35 283.3 29.3 281 62-377 7-392 (689)
51 TIGR00503 prfC peptide chain r 100.0 6.2E-30 1.3E-34 268.6 26.8 276 63-377 9-381 (527)
52 PF00009 GTP_EFTU: Elongation 100.0 1.1E-30 2.5E-35 241.1 18.8 175 63-263 1-178 (188)
53 PRK13351 elongation factor G; 100.0 2.7E-29 5.9E-34 274.9 28.2 273 62-377 5-390 (687)
54 CHL00189 infB translation init 100.0 1.2E-29 2.6E-34 272.1 24.8 252 61-376 240-501 (742)
55 PRK04004 translation initiatio 100.0 8.3E-29 1.8E-33 263.1 26.2 259 63-373 4-325 (586)
56 PRK12740 elongation factor G; 100.0 1.3E-28 2.8E-33 269.2 26.7 264 71-377 1-373 (668)
57 COG0532 InfB Translation initi 100.0 1E-28 2.2E-33 249.2 23.7 233 64-357 4-245 (509)
58 KOG1145 Mitochondrial translat 100.0 3.7E-29 8E-34 249.3 19.3 239 58-357 146-391 (683)
59 TIGR00490 aEF-2 translation el 100.0 7.7E-29 1.7E-33 271.2 23.6 287 63-377 17-374 (720)
60 TIGR00491 aIF-2 translation in 100.0 2.9E-28 6.3E-33 257.8 25.8 257 65-373 4-323 (590)
61 COG4108 PrfC Peptide chain rel 100.0 1.9E-28 4.1E-33 238.8 16.9 292 64-377 11-382 (528)
62 PLN00116 translation elongatio 100.0 1.6E-27 3.4E-32 264.4 24.6 153 62-237 16-190 (843)
63 COG0486 ThdF Predicted GTPase 100.0 8.3E-29 1.8E-33 246.6 10.3 206 3-265 156-369 (454)
64 KOG0466 Translation initiation 100.0 1.4E-28 2.9E-33 228.9 10.0 347 63-488 36-458 (466)
65 PTZ00416 elongation factor 2; 100.0 6.1E-27 1.3E-31 259.2 25.1 153 62-237 16-184 (836)
66 KOG0465 Mitochondrial elongati 100.0 4.1E-28 9E-33 244.4 14.0 276 61-376 35-420 (721)
67 cd01885 EF2 EF2 (for archaea a 99.9 2.1E-26 4.6E-31 216.3 15.7 173 66-261 1-201 (222)
68 cd04165 GTPBP1_like GTPBP1-lik 99.9 8E-26 1.7E-30 213.4 17.2 192 67-287 1-224 (224)
69 cd01886 EF-G Elongation factor 99.9 2.4E-25 5.2E-30 215.8 14.8 174 67-271 1-175 (270)
70 cd01889 SelB_euk SelB subfamil 99.9 1.1E-24 2.3E-29 202.0 16.8 163 66-263 1-177 (192)
71 cd01888 eIF2_gamma eIF2-gamma 99.9 1.4E-24 3.1E-29 202.8 16.2 157 66-263 1-190 (203)
72 PRK14845 translation initiatio 99.9 1.2E-23 2.5E-28 232.6 25.1 225 125-374 490-781 (1049)
73 cd01891 TypA_BipA TypA (tyrosi 99.9 3.1E-23 6.7E-28 192.5 17.9 171 65-263 2-173 (194)
74 cd04168 TetM_like Tet(M)-like 99.9 1.5E-23 3.2E-28 199.8 16.0 143 67-231 1-143 (237)
75 KOG0464 Elongation factor G [T 99.9 9.9E-25 2.1E-29 210.6 5.2 276 62-377 34-419 (753)
76 KOG0469 Elongation factor 2 [T 99.9 1.5E-23 3.3E-28 206.6 13.2 303 61-388 15-485 (842)
77 COG1160 Predicted GTPases [Gen 99.9 3.2E-23 6.9E-28 206.3 15.2 158 63-265 176-344 (444)
78 cd04171 SelB SelB subfamily. 99.9 1.5E-22 3.2E-27 182.0 17.6 156 66-263 1-157 (164)
79 cd04167 Snu114p Snu114p subfam 99.9 1.2E-22 2.6E-27 191.4 17.5 165 66-252 1-176 (213)
80 cd01890 LepA LepA subfamily. 99.9 1.1E-22 2.4E-27 186.0 16.8 163 66-263 1-168 (179)
81 cd03704 eRF3c_III This family 99.9 5.7E-23 1.2E-27 171.6 12.6 107 382-489 2-108 (108)
82 PRK05291 trmE tRNA modificatio 99.9 1.5E-23 3.2E-28 217.7 10.0 201 3-265 154-363 (449)
83 cd04093 HBS1_C HBS1_C: this fa 99.9 4.9E-22 1.1E-26 165.9 14.2 106 382-489 2-107 (107)
84 cd04169 RF3 RF3 subfamily. Pe 99.9 4E-22 8.6E-27 193.2 15.7 150 65-236 2-151 (267)
85 KOG1144 Translation initiation 99.9 3.2E-22 7E-27 205.0 15.2 247 62-358 472-794 (1064)
86 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.6E-22 3.5E-27 208.7 12.7 199 3-264 146-352 (442)
87 COG1160 Predicted GTPases [Gen 99.9 6E-22 1.3E-26 197.2 13.6 146 66-265 4-158 (444)
88 KOG0467 Translation elongation 99.9 7E-21 1.5E-25 196.6 21.8 177 61-261 5-206 (887)
89 KOG1191 Mitochondrial GTPase [ 99.9 1.3E-22 2.9E-27 201.4 6.7 215 6-266 209-444 (531)
90 cd03705 EF1_alpha_III Domain I 99.9 1.3E-21 2.9E-26 162.4 11.4 102 382-486 2-104 (104)
91 PF02421 FeoB_N: Ferrous iron 99.9 1E-21 2.2E-26 172.8 10.7 144 66-263 1-152 (156)
92 cd00881 GTP_translation_factor 99.9 6.8E-21 1.5E-25 175.3 16.5 170 67-263 1-178 (189)
93 COG1159 Era GTPase [General fu 99.9 3.3E-21 7.2E-26 182.1 12.8 152 64-264 5-164 (298)
94 PRK00093 GTP-binding protein D 99.8 1.6E-20 3.4E-25 196.0 16.0 157 62-265 170-337 (435)
95 cd04170 EF-G_bact Elongation f 99.8 3.1E-20 6.7E-25 181.1 14.0 164 67-263 1-164 (268)
96 cd04095 CysN_NoDQ_III TCysN_No 99.8 4.1E-20 9E-25 153.0 12.0 100 382-486 2-103 (103)
97 PF03143 GTP_EFTU_D3: Elongati 99.8 8.9E-20 1.9E-24 149.4 13.1 98 379-489 1-98 (99)
98 TIGR03594 GTPase_EngA ribosome 99.8 6.3E-20 1.4E-24 191.2 15.3 158 62-265 169-337 (429)
99 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.7E-19 3.7E-24 162.8 15.6 154 67-264 2-158 (168)
100 TIGR03156 GTP_HflX GTP-binding 99.8 3E-20 6.6E-25 186.6 11.5 171 38-264 159-344 (351)
101 TIGR00436 era GTP-binding prot 99.8 3.1E-19 6.7E-24 174.2 16.5 148 67-265 2-157 (270)
102 cd01895 EngA2 EngA2 subfamily. 99.8 1.3E-18 2.8E-23 157.4 15.7 154 65-263 2-166 (174)
103 cd04160 Arfrp1 Arfrp1 subfamil 99.8 6.9E-19 1.5E-23 158.9 13.5 156 67-263 1-160 (167)
104 PRK03003 GTP-binding protein D 99.8 8.8E-19 1.9E-23 183.9 15.1 155 64-265 210-375 (472)
105 TIGR03598 GTPase_YsxC ribosome 99.8 2E-18 4.3E-23 158.1 15.0 153 61-261 14-179 (179)
106 PRK15494 era GTPase Era; Provi 99.8 2.7E-18 5.8E-23 172.3 16.0 151 63-264 50-208 (339)
107 cd01513 Translation_factor_III 99.8 2.2E-18 4.7E-23 142.6 12.3 101 382-486 2-102 (102)
108 TIGR03594 GTPase_EngA ribosome 99.8 2E-18 4.4E-23 180.0 15.0 144 67-264 1-152 (429)
109 cd01894 EngA1 EngA1 subfamily. 99.8 4.3E-18 9.4E-23 151.6 13.3 142 69-264 1-150 (157)
110 PRK03003 GTP-binding protein D 99.8 7.9E-18 1.7E-22 176.7 16.1 148 64-265 37-192 (472)
111 KOG0468 U5 snRNP-specific prot 99.8 3.7E-17 8.1E-22 166.5 19.3 133 61-215 124-261 (971)
112 cd01879 FeoB Ferrous iron tran 99.8 5.4E-18 1.2E-22 151.3 11.6 141 70-264 1-149 (158)
113 PRK09518 bifunctional cytidyla 99.8 9.2E-18 2E-22 184.3 15.1 155 64-265 449-614 (712)
114 PRK00089 era GTPase Era; Revie 99.7 4.1E-17 8.9E-22 161.3 16.9 152 64-264 4-163 (292)
115 cd03693 EF1_alpha_II EF1_alpha 99.7 1.9E-17 4.1E-22 133.5 11.2 87 292-378 2-90 (91)
116 cd04164 trmE TrmE (MnmE, ThdF, 99.7 4E-17 8.7E-22 145.2 13.7 140 65-264 1-149 (157)
117 PRK11058 GTPase HflX; Provisio 99.7 8.7E-18 1.9E-22 172.6 10.4 176 39-265 168-355 (426)
118 PRK00093 GTP-binding protein D 99.7 5E-17 1.1E-21 169.7 15.5 145 66-264 2-154 (435)
119 cd01898 Obg Obg subfamily. Th 99.7 2.8E-17 6.1E-22 148.7 11.5 148 67-264 2-163 (170)
120 PRK09554 feoB ferrous iron tra 99.7 7.2E-17 1.6E-21 176.5 16.4 146 65-264 3-160 (772)
121 PRK09518 bifunctional cytidyla 99.7 1.1E-16 2.3E-21 175.9 17.6 150 62-265 272-429 (712)
122 cd04154 Arl2 Arl2 subfamily. 99.7 5.4E-17 1.2E-21 147.7 12.4 150 64-263 13-166 (173)
123 cd04089 eRF3_II eRF3_II: domai 99.7 5.7E-17 1.2E-21 128.1 10.8 82 294-375 1-82 (82)
124 cd01864 Rab19 Rab19 subfamily. 99.7 6.7E-17 1.5E-21 145.7 12.8 150 65-263 3-157 (165)
125 cd01878 HflX HflX subfamily. 99.7 3.7E-17 8.1E-22 152.8 11.3 147 63-264 39-197 (204)
126 PRK15467 ethanolamine utilizat 99.7 7.5E-17 1.6E-21 144.4 12.0 133 67-264 3-139 (158)
127 cd01897 NOG NOG1 is a nucleola 99.7 1.4E-16 3E-21 143.9 13.4 149 66-264 1-160 (168)
128 TIGR00231 small_GTP small GTP- 99.7 1.1E-16 2.3E-21 141.9 12.2 145 66-263 2-155 (161)
129 cd04157 Arl6 Arl6 subfamily. 99.7 1.4E-16 3E-21 142.9 12.7 149 67-263 1-155 (162)
130 cd01861 Rab6 Rab6 subfamily. 99.7 1.8E-16 3.8E-21 142.1 13.1 149 66-264 1-154 (161)
131 cd01860 Rab5_related Rab5-rela 99.7 2.8E-16 6.1E-21 141.1 14.4 150 66-264 2-155 (163)
132 TIGR02528 EutP ethanolamine ut 99.7 1.2E-16 2.5E-21 140.4 11.5 131 67-263 2-136 (142)
133 PRK00454 engB GTP-binding prot 99.7 4.5E-16 9.7E-21 144.4 15.7 154 61-264 20-186 (196)
134 cd04151 Arl1 Arl1 subfamily. 99.7 2.5E-16 5.5E-21 140.9 13.5 148 67-264 1-152 (158)
135 PRK12298 obgE GTPase CgtA; Rev 99.7 1.6E-16 3.4E-21 161.6 13.7 156 64-265 158-326 (390)
136 cd03698 eRF3_II_like eRF3_II_l 99.7 1.8E-16 3.8E-21 125.6 10.9 82 294-375 1-83 (83)
137 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2.8E-16 6.1E-21 140.6 13.7 147 66-264 2-154 (162)
138 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.9E-16 4.2E-21 142.2 12.6 149 65-264 2-156 (164)
139 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.2E-16 2.5E-21 146.9 11.3 160 65-265 3-163 (183)
140 PRK12299 obgE GTPase CgtA; Rev 99.7 2.2E-16 4.8E-21 157.4 13.7 153 63-265 156-321 (335)
141 cd04124 RabL2 RabL2 subfamily. 99.7 3.8E-16 8.2E-21 140.3 13.7 149 66-265 1-151 (161)
142 cd01863 Rab18 Rab18 subfamily. 99.7 2.4E-16 5.2E-21 141.3 12.3 149 66-263 1-153 (161)
143 smart00175 RAB Rab subfamily o 99.7 3.2E-16 7E-21 140.7 13.0 148 66-264 1-154 (164)
144 PRK12296 obgE GTPase CgtA; Rev 99.7 2.3E-16 4.9E-21 163.1 13.6 158 63-265 157-333 (500)
145 cd04149 Arf6 Arf6 subfamily. 99.7 3.2E-16 6.9E-21 141.9 12.4 151 63-263 7-161 (168)
146 cd04150 Arf1_5_like Arf1-Arf5- 99.7 7.6E-16 1.6E-20 138.1 14.6 148 66-263 1-152 (159)
147 PRK04213 GTP-binding protein; 99.7 5.1E-16 1.1E-20 144.8 13.9 155 64-264 8-184 (201)
148 COG2262 HflX GTPases [General 99.7 1.1E-16 2.4E-21 157.4 9.6 171 40-265 167-349 (411)
149 cd01862 Rab7 Rab7 subfamily. 99.7 1E-15 2.2E-20 138.6 15.3 146 66-265 1-160 (172)
150 cd04163 Era Era subfamily. Er 99.7 8.7E-16 1.9E-20 137.6 14.6 150 65-263 3-160 (168)
151 cd04113 Rab4 Rab4 subfamily. 99.7 3.7E-16 8.1E-21 140.1 12.1 148 66-263 1-153 (161)
152 smart00173 RAS Ras subfamily o 99.7 4.3E-16 9.4E-21 140.1 12.5 147 66-264 1-154 (164)
153 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 8.5E-16 1.8E-20 139.9 14.5 150 65-264 15-168 (174)
154 cd01867 Rab8_Rab10_Rab13_like 99.7 7E-16 1.5E-20 139.4 13.7 149 65-264 3-157 (167)
155 cd04106 Rab23_lke Rab23-like s 99.7 1.5E-15 3.2E-20 136.2 15.8 147 66-263 1-154 (162)
156 cd04158 ARD1 ARD1 subfamily. 99.7 5.6E-16 1.2E-20 140.4 13.0 149 67-264 1-153 (169)
157 PLN00223 ADP-ribosylation fact 99.7 7.6E-16 1.7E-20 141.2 13.9 152 63-264 15-170 (181)
158 TIGR02729 Obg_CgtA Obg family 99.7 4E-16 8.7E-21 155.5 12.8 157 63-264 155-321 (329)
159 cd00154 Rab Rab family. Rab G 99.7 9.7E-16 2.1E-20 136.1 13.9 147 66-263 1-153 (159)
160 cd04119 RJL RJL (RabJ-Like) su 99.7 1.7E-15 3.7E-20 136.4 15.5 148 66-264 1-159 (168)
161 cd04142 RRP22 RRP22 subfamily. 99.7 1.7E-15 3.8E-20 140.7 15.9 147 66-265 1-167 (198)
162 cd01866 Rab2 Rab2 subfamily. 99.7 6.2E-16 1.3E-20 140.0 12.3 151 65-264 4-158 (168)
163 cd04175 Rap1 Rap1 subgroup. T 99.7 6E-16 1.3E-20 139.3 11.8 147 66-264 2-155 (164)
164 PF10662 PduV-EutP: Ethanolami 99.7 4.4E-16 9.6E-21 134.0 10.2 132 66-263 2-137 (143)
165 smart00178 SAR Sar1p-like memb 99.7 8.3E-16 1.8E-20 141.3 12.8 157 63-264 15-177 (184)
166 PRK12297 obgE GTPase CgtA; Rev 99.7 1.2E-15 2.5E-20 156.0 15.1 150 65-265 158-320 (424)
167 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.2E-15 2.6E-20 137.6 13.6 149 65-264 2-156 (166)
168 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.3E-15 2.8E-20 136.4 13.5 148 67-263 1-153 (160)
169 cd04112 Rab26 Rab26 subfamily. 99.7 8.3E-16 1.8E-20 142.2 12.6 150 66-265 1-156 (191)
170 cd01865 Rab3 Rab3 subfamily. 99.7 1.7E-15 3.7E-20 136.6 13.8 149 66-265 2-156 (165)
171 cd04116 Rab9 Rab9 subfamily. 99.7 4.7E-15 1E-19 134.2 16.6 153 64-263 4-162 (170)
172 smart00177 ARF ARF-like small 99.7 9E-16 2E-20 139.9 11.9 151 64-264 12-166 (175)
173 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.8E-15 4E-20 141.1 14.2 150 66-265 1-161 (201)
174 cd01868 Rab11_like Rab11-like. 99.7 1.3E-15 2.7E-20 137.3 12.6 150 65-264 3-157 (165)
175 cd04136 Rap_like Rap-like subf 99.6 3.1E-15 6.8E-20 134.2 15.2 148 66-264 2-155 (163)
176 cd04114 Rab30 Rab30 subfamily. 99.6 1.2E-15 2.6E-20 137.9 12.3 152 63-264 5-161 (169)
177 cd03694 GTPBP_II Domain II of 99.6 8.8E-16 1.9E-20 122.6 10.0 81 295-375 1-87 (87)
178 cd04127 Rab27A Rab27a subfamil 99.6 3.1E-15 6.8E-20 136.7 15.0 151 64-265 3-170 (180)
179 COG0218 Predicted GTPase [Gene 99.6 2.7E-15 5.9E-20 134.8 14.0 157 61-264 20-189 (200)
180 cd04139 RalA_RalB RalA/RalB su 99.6 1.4E-15 3.1E-20 136.4 12.3 148 66-265 1-155 (164)
181 COG2229 Predicted GTPase [Gene 99.6 2.7E-15 5.9E-20 131.8 13.5 162 61-263 6-169 (187)
182 cd00879 Sar1 Sar1 subfamily. 99.6 6.9E-16 1.5E-20 142.5 10.3 153 63-264 17-183 (190)
183 PTZ00133 ADP-ribosylation fact 99.6 2.5E-15 5.4E-20 137.9 13.9 153 63-265 15-171 (182)
184 cd00878 Arf_Arl Arf (ADP-ribos 99.6 1.1E-15 2.5E-20 136.5 11.2 147 67-263 1-151 (158)
185 cd04140 ARHI_like ARHI subfami 99.6 4.3E-15 9.3E-20 134.0 14.8 149 66-264 2-157 (165)
186 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 3.7E-15 8E-20 135.2 14.0 152 67-265 2-158 (170)
187 cd04109 Rab28 Rab28 subfamily. 99.6 1E-14 2.2E-19 137.6 17.3 150 66-265 1-159 (215)
188 cd04122 Rab14 Rab14 subfamily. 99.6 1.2E-15 2.5E-20 137.8 10.4 148 66-264 3-156 (166)
189 cd03697 EFTU_II EFTU_II: Elong 99.6 1.2E-15 2.7E-20 121.8 9.3 83 295-377 1-87 (87)
190 cd04144 Ras2 Ras2 subfamily. 99.6 2.6E-15 5.7E-20 138.8 12.7 147 67-265 1-156 (190)
191 cd00877 Ran Ran (Ras-related n 99.6 5.3E-15 1.1E-19 133.7 14.4 148 66-265 1-152 (166)
192 PLN03118 Rab family protein; P 99.6 5.8E-15 1.3E-19 138.8 15.1 151 63-265 12-170 (211)
193 PF00025 Arf: ADP-ribosylation 99.6 4.5E-15 9.8E-20 135.3 13.9 152 63-263 12-167 (175)
194 cd04147 Ras_dva Ras-dva subfam 99.6 6.2E-15 1.3E-19 137.2 14.7 150 67-265 1-156 (198)
195 cd04120 Rab12 Rab12 subfamily. 99.6 2.7E-15 5.9E-20 139.6 12.2 151 66-265 1-156 (202)
196 cd04155 Arl3 Arl3 subfamily. 99.6 1.8E-15 3.8E-20 137.4 10.5 151 63-263 12-166 (173)
197 cd04118 Rab24 Rab24 subfamily. 99.6 4.6E-15 1E-19 137.4 13.4 155 66-265 1-159 (193)
198 cd04115 Rab33B_Rab33A Rab33B/R 99.6 7.8E-15 1.7E-19 133.0 14.6 148 65-263 2-160 (170)
199 KOG1423 Ras-like GTPase ERA [C 99.6 2.2E-15 4.8E-20 141.7 11.0 119 60-216 67-198 (379)
200 cd04161 Arl2l1_Arl13_like Arl2 99.6 3.8E-15 8.3E-20 134.7 12.3 148 67-263 1-160 (167)
201 cd04135 Tc10 TC10 subfamily. 99.6 4.4E-15 9.5E-20 134.9 12.6 155 66-264 1-166 (174)
202 cd04159 Arl10_like Arl10-like 99.6 6.5E-15 1.4E-19 130.9 13.4 147 68-263 2-152 (159)
203 cd04110 Rab35 Rab35 subfamily. 99.6 1.3E-14 2.9E-19 135.0 15.9 151 64-265 5-160 (199)
204 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.5E-14 3.2E-19 132.7 15.9 155 66-265 1-159 (182)
205 TIGR00437 feoB ferrous iron tr 99.6 4.2E-15 9.1E-20 159.1 13.8 140 72-265 1-148 (591)
206 cd04123 Rab21 Rab21 subfamily. 99.6 5.4E-15 1.2E-19 132.2 12.4 148 66-264 1-154 (162)
207 cd01882 BMS1 Bms1. Bms1 is an 99.6 3.7E-14 8E-19 134.4 18.6 167 61-286 35-201 (225)
208 cd01881 Obg_like The Obg-like 99.6 3E-15 6.6E-20 136.0 10.8 148 70-264 1-169 (176)
209 COG0370 FeoB Fe2+ transport sy 99.6 4.2E-15 9.1E-20 155.0 13.1 146 65-264 3-156 (653)
210 cd03696 selB_II selB_II: this 99.6 5E-15 1.1E-19 117.3 10.3 81 295-375 1-83 (83)
211 cd04176 Rap2 Rap2 subgroup. T 99.6 2.1E-14 4.6E-19 128.9 15.7 147 66-263 2-154 (163)
212 cd01893 Miro1 Miro1 subfamily. 99.6 1.2E-14 2.5E-19 131.3 14.1 153 66-264 1-156 (166)
213 cd04126 Rab20 Rab20 subfamily. 99.6 6.6E-15 1.4E-19 138.6 12.9 159 66-265 1-183 (220)
214 cd01892 Miro2 Miro2 subfamily. 99.6 5.8E-15 1.3E-19 133.8 12.1 150 63-264 2-158 (169)
215 cd04101 RabL4 RabL4 (Rab-like4 99.6 4.6E-15 1E-19 133.4 11.4 150 66-264 1-156 (164)
216 PTZ00369 Ras-like protein; Pro 99.6 4.5E-15 9.7E-20 137.1 11.5 152 64-265 4-160 (189)
217 cd04121 Rab40 Rab40 subfamily. 99.6 2.2E-14 4.7E-19 132.2 15.8 151 64-265 5-160 (189)
218 cd00880 Era_like Era (E. coli 99.6 9.7E-15 2.1E-19 129.4 12.8 147 70-263 1-155 (163)
219 cd04177 RSR1 RSR1 subgroup. R 99.6 6.3E-15 1.4E-19 133.3 11.7 149 66-264 2-156 (168)
220 cd04137 RheB Rheb (Ras Homolog 99.6 8E-15 1.7E-19 134.1 12.5 148 66-265 2-156 (180)
221 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.1E-14 2.4E-19 131.2 13.1 148 68-263 2-157 (164)
222 cd00876 Ras Ras family. The R 99.6 7.2E-15 1.6E-19 131.2 11.5 146 67-263 1-152 (160)
223 smart00174 RHO Rho (Ras homolo 99.6 2E-14 4.4E-19 130.6 14.5 150 68-265 1-165 (174)
224 cd04132 Rho4_like Rho4-like su 99.6 1.4E-14 3E-19 133.4 13.6 154 66-265 1-160 (187)
225 cd01871 Rac1_like Rac1-like su 99.6 3.1E-14 6.7E-19 129.7 15.6 155 66-264 2-167 (174)
226 cd01874 Cdc42 Cdc42 subfamily. 99.6 2.8E-14 6.2E-19 130.0 15.2 152 66-264 2-167 (175)
227 cd04143 Rhes_like Rhes_like su 99.6 1.9E-14 4E-19 138.2 14.6 149 66-264 1-163 (247)
228 cd00157 Rho Rho (Ras homology) 99.6 1.4E-14 3.1E-19 131.0 12.9 155 66-263 1-164 (171)
229 PLN03110 Rab GTPase; Provision 99.6 2.4E-14 5.2E-19 135.0 14.2 151 64-265 11-167 (216)
230 cd03695 CysN_NodQ_II CysN_NodQ 99.6 1.5E-14 3.3E-19 113.6 10.7 79 295-375 1-81 (81)
231 cd04125 RabA_like RabA-like su 99.6 1.3E-14 2.7E-19 133.9 12.0 149 66-265 1-155 (188)
232 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 5.4E-14 1.2E-18 127.8 16.0 147 66-265 3-157 (172)
233 cd03706 mtEFTU_III Domain III 99.6 3.1E-14 6.7E-19 115.4 12.5 88 383-489 3-93 (93)
234 cd01896 DRG The developmentall 99.6 2.1E-14 4.6E-19 136.7 13.4 82 67-179 2-90 (233)
235 cd01876 YihA_EngB The YihA (En 99.6 7.3E-14 1.6E-18 125.4 15.3 149 68-264 2-163 (170)
236 PF01926 MMR_HSR1: 50S ribosom 99.6 1.5E-14 3.2E-19 122.6 9.9 107 67-212 1-116 (116)
237 PLN03071 GTP-binding nuclear p 99.6 4.5E-14 9.7E-19 133.4 14.1 153 63-265 11-165 (219)
238 cd04111 Rab39 Rab39 subfamily. 99.6 4.8E-14 1E-18 132.5 13.7 151 65-265 2-159 (211)
239 PRK09866 hypothetical protein; 99.6 1.1E-13 2.4E-18 143.7 17.4 110 142-264 229-345 (741)
240 cd04117 Rab15 Rab15 subfamily. 99.6 7.3E-14 1.6E-18 125.5 14.2 147 66-263 1-153 (161)
241 cd04134 Rho3 Rho3 subfamily. 99.6 1.3E-13 2.9E-18 127.2 15.9 155 66-264 1-166 (189)
242 PLN03108 Rab family protein; P 99.5 4.7E-14 1E-18 132.5 12.9 149 65-264 6-160 (210)
243 cd04130 Wrch_1 Wrch-1 subfamil 99.5 3.3E-14 7.1E-19 129.3 11.4 156 66-264 1-166 (173)
244 cd04146 RERG_RasL11_like RERG/ 99.5 6.1E-14 1.3E-18 126.3 12.7 146 67-264 1-156 (165)
245 cd03708 GTPBP_III Domain III o 99.5 4.6E-14 9.9E-19 113.0 10.3 85 382-489 2-87 (87)
246 cd03707 EFTU_III Domain III of 99.5 7.1E-14 1.5E-18 112.6 11.0 85 383-486 3-90 (90)
247 KOG0092 GTPase Rab5/YPT51 and 99.5 8.2E-14 1.8E-18 123.1 11.5 149 64-263 4-158 (200)
248 cd01870 RhoA_like RhoA-like su 99.5 1.9E-13 4.2E-18 124.2 14.3 155 66-264 2-167 (175)
249 cd04133 Rop_like Rop subfamily 99.5 3.2E-13 6.9E-18 123.0 15.4 154 66-264 2-165 (176)
250 cd01875 RhoG RhoG subfamily. 99.5 4.6E-13 1E-17 123.8 16.6 156 65-265 3-170 (191)
251 KOG0073 GTP-binding ADP-ribosy 99.5 2.3E-13 4.9E-18 116.8 12.8 151 64-263 15-169 (185)
252 COG1084 Predicted GTPase [Gene 99.5 1.1E-13 2.3E-18 132.5 11.7 155 61-263 164-327 (346)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.3E-13 4.9E-18 126.4 13.1 138 66-240 1-153 (196)
254 smart00176 RAN Ran (Ras-relate 99.5 4.3E-13 9.3E-18 124.6 14.7 141 71-265 1-147 (200)
255 KOG1489 Predicted GTP-binding 99.5 1.3E-13 2.7E-18 130.8 10.9 154 63-264 194-359 (366)
256 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 1E-12 2.3E-17 120.4 16.8 156 63-264 3-172 (182)
257 cd04105 SR_beta Signal recogni 99.5 4.4E-13 9.4E-18 125.1 14.2 133 66-236 1-142 (203)
258 cd04104 p47_IIGP_like p47 (47- 99.5 3.1E-13 6.7E-18 125.6 12.7 155 66-263 2-175 (197)
259 cd04148 RGK RGK subfamily. Th 99.5 3.4E-13 7.4E-18 127.6 13.0 147 66-265 1-156 (221)
260 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 1.6E-12 3.5E-17 123.2 17.4 158 63-265 11-181 (232)
261 cd00882 Ras_like_GTPase Ras-li 99.5 2.9E-13 6.3E-18 118.4 10.9 143 70-263 1-151 (157)
262 cd04131 Rnd Rnd subfamily. Th 99.5 1.7E-12 3.6E-17 118.6 15.4 154 66-264 2-168 (178)
263 COG1163 DRG Predicted GTPase [ 99.4 4.6E-13 1E-17 127.6 10.9 86 64-180 62-154 (365)
264 cd04129 Rho2 Rho2 subfamily. 99.4 1.6E-12 3.5E-17 119.8 12.9 155 66-265 2-166 (187)
265 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 2.6E-12 5.7E-17 121.1 13.8 152 66-264 2-168 (222)
266 COG3596 Predicted GTPase [Gene 99.4 2E-12 4.3E-17 121.1 12.6 158 61-263 35-213 (296)
267 KOG0084 GTPase Rab1/YPT1, smal 99.4 2.3E-12 5E-17 114.4 12.0 154 63-263 7-163 (205)
268 PTZ00132 GTP-binding nuclear p 99.4 5.8E-12 1.3E-16 118.8 14.4 150 62-263 6-159 (215)
269 PF00071 Ras: Ras family; Int 99.4 2E-12 4.3E-17 115.9 10.6 147 67-263 1-152 (162)
270 cd01873 RhoBTB RhoBTB subfamil 99.4 9.4E-12 2E-16 115.3 14.7 107 142-263 65-187 (195)
271 cd04103 Centaurin_gamma Centau 99.4 9.1E-12 2E-16 111.5 14.0 144 66-263 1-150 (158)
272 KOG0078 GTP-binding protein SE 99.4 3E-12 6.6E-17 115.3 9.3 148 61-263 8-165 (207)
273 PF09439 SRPRB: Signal recogni 99.3 3.9E-12 8.5E-17 114.6 9.6 114 65-218 3-127 (181)
274 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 1.2E-11 2.7E-16 109.4 12.3 153 61-264 18-177 (221)
275 KOG0070 GTP-binding ADP-ribosy 99.3 4.9E-12 1.1E-16 111.6 9.7 153 61-263 13-169 (181)
276 KOG0098 GTPase Rab2, small G p 99.3 2.8E-12 6.2E-17 112.4 8.1 150 65-264 6-160 (216)
277 KOG0410 Predicted GTP binding 99.3 2.4E-12 5.3E-17 122.2 8.0 169 36-264 150-333 (410)
278 KOG0394 Ras-related GTPase [Ge 99.3 9.8E-12 2.1E-16 108.9 9.8 156 61-264 5-170 (210)
279 COG0536 Obg Predicted GTPase [ 99.3 9.6E-12 2.1E-16 119.6 9.7 151 64-265 158-326 (369)
280 cd01850 CDC_Septin CDC/Septin. 99.3 8E-11 1.7E-15 114.9 16.2 144 65-241 4-177 (276)
281 KOG0075 GTP-binding ADP-ribosy 99.3 8.8E-12 1.9E-16 104.9 7.9 150 63-263 18-173 (186)
282 cd01853 Toc34_like Toc34-like 99.3 1.1E-10 2.5E-15 111.7 16.0 122 61-218 27-164 (249)
283 PF08477 Miro: Miro-like prote 99.3 6.7E-12 1.5E-16 106.5 6.4 114 67-214 1-119 (119)
284 KOG1532 GTPase XAB1, interacts 99.2 1.7E-11 3.6E-16 114.0 8.0 201 61-264 15-256 (366)
285 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 8.7E-11 1.9E-15 110.6 13.0 153 67-256 1-161 (232)
286 cd01899 Ygr210 Ygr210 subfamil 99.2 8E-11 1.7E-15 116.6 13.0 37 142-178 68-111 (318)
287 KOG0076 GTP-binding ADP-ribosy 99.2 1.9E-11 4.2E-16 106.0 7.3 165 61-263 13-178 (197)
288 PLN00023 GTP-binding protein; 99.2 1.7E-10 3.7E-15 112.8 14.1 148 59-242 15-190 (334)
289 cd04102 RabL3 RabL3 (Rab-like3 99.2 3.3E-10 7.2E-15 105.3 14.9 86 66-180 1-91 (202)
290 cd03688 eIF2_gamma_II eIF2_gam 99.2 1.8E-10 4E-15 93.3 11.3 86 291-376 2-112 (113)
291 KOG0080 GTPase Rab18, small G 99.2 6.5E-11 1.4E-15 101.2 8.0 149 64-263 10-165 (209)
292 PRK09435 membrane ATPase/prote 99.2 2.6E-10 5.7E-15 113.0 13.6 108 139-265 145-253 (332)
293 cd04094 selB_III This family r 99.2 2.7E-10 5.9E-15 92.9 11.4 95 370-486 1-97 (97)
294 COG1100 GTPase SAR1 and relate 99.2 3.6E-10 7.7E-15 106.7 13.7 115 66-217 6-125 (219)
295 KOG0087 GTPase Rab11/YPT3, sma 99.2 1.3E-10 2.8E-15 104.4 9.6 147 63-264 12-168 (222)
296 KOG0086 GTPase Rab4, small G p 99.2 9.1E-11 2E-15 99.3 8.0 150 65-263 9-162 (214)
297 KOG0090 Signal recognition par 99.2 3.3E-10 7.1E-15 102.0 11.9 129 66-236 39-178 (238)
298 TIGR02836 spore_IV_A stage IV 99.2 2.9E-10 6.3E-15 112.9 12.3 136 61-215 13-192 (492)
299 cd03692 mtIF2_IVc mtIF2_IVc: t 99.1 5E-10 1.1E-14 88.6 11.2 75 297-373 3-82 (84)
300 PTZ00258 GTP-binding protein; 99.1 3.7E-10 8.1E-15 114.0 13.0 86 61-177 17-126 (390)
301 KOG0093 GTPase Rab3, small G p 99.1 9.1E-11 2E-15 98.8 6.6 155 65-264 21-175 (193)
302 KOG0095 GTPase Rab30, small G 99.1 2.8E-10 6E-15 96.0 8.3 152 64-264 6-161 (213)
303 PRK09601 GTP-binding protein Y 99.1 6.5E-10 1.4E-14 111.0 12.4 81 66-177 3-107 (364)
304 PRK09602 translation-associate 99.1 1.8E-09 3.9E-14 110.3 14.9 81 66-177 2-113 (396)
305 KOG0088 GTPase Rab21, small G 99.1 2.8E-10 6.1E-15 97.0 7.0 154 65-265 13-168 (218)
306 COG4917 EutP Ethanolamine util 99.1 4.1E-10 8.9E-15 92.5 7.5 132 66-263 2-137 (148)
307 PRK13768 GTPase; Provisional 99.0 1.2E-09 2.6E-14 105.4 10.4 110 142-264 96-239 (253)
308 TIGR00991 3a0901s02IAP34 GTP-b 99.0 3.6E-09 7.8E-14 103.0 12.8 118 63-216 36-166 (313)
309 KOG0071 GTP-binding ADP-ribosy 99.0 7.4E-09 1.6E-13 86.7 12.8 149 64-262 16-168 (180)
310 COG5192 BMS1 GTP-binding prote 99.0 1.2E-08 2.5E-13 103.4 16.5 147 61-258 65-212 (1077)
311 PTZ00099 rab6; Provisional 99.0 1.9E-09 4.2E-14 98.2 9.8 114 132-265 16-135 (176)
312 TIGR00750 lao LAO/AO transport 99.0 3E-09 6.4E-14 105.4 11.8 104 139-265 123-231 (300)
313 PF03029 ATP_bind_1: Conserved 99.0 1.2E-09 2.5E-14 104.2 8.4 112 144-263 92-228 (238)
314 TIGR00073 hypB hydrogenase acc 99.0 4.6E-09 9.9E-14 98.4 11.9 98 142-264 102-199 (207)
315 KOG0077 Vesicle coat complex C 99.0 4.3E-09 9.3E-14 90.9 9.9 157 63-262 18-183 (193)
316 KOG0079 GTP-binding protein H- 98.9 3E-09 6.6E-14 89.8 8.1 149 66-264 9-161 (198)
317 KOG0074 GTP-binding ADP-ribosy 98.9 4E-09 8.7E-14 88.4 8.3 151 62-264 14-171 (185)
318 PF04548 AIG1: AIG1 family; I 98.9 1.6E-08 3.4E-13 95.1 13.4 138 66-240 1-154 (212)
319 PF05049 IIGP: Interferon-indu 98.9 5.7E-09 1.2E-13 104.3 10.0 147 64-256 34-200 (376)
320 smart00053 DYNc Dynamin, GTPas 98.9 4.7E-09 1E-13 99.6 8.6 146 63-216 24-205 (240)
321 KOG3886 GTP-binding protein [S 98.9 4E-09 8.6E-14 96.0 7.4 153 65-256 4-163 (295)
322 KOG0097 GTPase Rab14, small G 98.9 8.4E-09 1.8E-13 86.2 8.6 147 64-263 10-164 (215)
323 PF00350 Dynamin_N: Dynamin fa 98.9 5.4E-09 1.2E-13 94.3 8.2 66 141-213 99-168 (168)
324 KOG0072 GTP-binding ADP-ribosy 98.9 4.2E-09 9.1E-14 88.6 5.9 153 64-264 17-171 (182)
325 PF03144 GTP_EFTU_D2: Elongati 98.9 1E-08 2.2E-13 79.2 7.7 68 307-374 1-74 (74)
326 KOG0395 Ras-related GTPase [Ge 98.8 4E-08 8.7E-13 90.7 12.6 150 65-264 3-157 (196)
327 PF03308 ArgK: ArgK protein; 98.8 8.7E-09 1.9E-13 96.8 8.0 173 64-265 28-223 (266)
328 cd01900 YchF YchF subfamily. 98.8 4.8E-09 1E-13 101.5 6.4 80 68-178 1-104 (274)
329 PRK10463 hydrogenase nickel in 98.8 2E-08 4.4E-13 97.1 10.2 45 44-88 83-127 (290)
330 KOG1486 GTP-binding protein DR 98.8 1.9E-08 4.1E-13 92.7 9.3 86 64-180 61-153 (364)
331 KOG0091 GTPase Rab39, small G 98.8 8.2E-09 1.8E-13 88.7 6.5 148 65-265 8-166 (213)
332 cd01342 Translation_Factor_II_ 98.8 6.6E-08 1.4E-12 75.5 10.2 78 295-374 1-82 (83)
333 TIGR00993 3a0901s04IAP86 chlor 98.8 9.9E-08 2.1E-12 100.4 13.6 119 63-217 116-250 (763)
334 KOG2486 Predicted GTPase [Gene 98.8 3.8E-08 8.2E-13 92.4 9.4 161 62-264 133-308 (320)
335 PF00735 Septin: Septin; Inte 98.7 1.7E-07 3.8E-12 91.4 14.1 143 65-242 4-177 (281)
336 TIGR00101 ureG urease accessor 98.7 1.3E-07 2.9E-12 87.7 11.8 98 142-264 91-188 (199)
337 KOG0081 GTPase Rab27, small G 98.7 1.4E-08 3E-13 86.8 3.5 105 143-265 67-174 (219)
338 COG1703 ArgK Putative periplas 98.7 1.6E-07 3.5E-12 89.5 10.9 103 141-265 142-247 (323)
339 PF14578 GTP_EFTU_D4: Elongati 98.7 3.2E-07 6.9E-12 70.7 10.3 76 293-374 3-80 (81)
340 COG0012 Predicted GTPase, prob 98.6 2.9E-07 6.3E-12 90.8 11.8 82 65-177 2-108 (372)
341 cd04178 Nucleostemin_like Nucl 98.6 3.8E-08 8.2E-13 89.1 5.3 59 62-153 114-172 (172)
342 cd01858 NGP_1 NGP-1. Autoanti 98.6 4.2E-08 9.1E-13 87.6 5.1 57 64-153 101-157 (157)
343 COG0378 HypB Ni2+-binding GTPa 98.6 3.8E-07 8.2E-12 81.9 10.3 90 143-263 97-192 (202)
344 KOG1490 GTP-binding protein CR 98.6 1.2E-07 2.7E-12 95.4 7.8 153 62-263 165-332 (620)
345 KOG0448 Mitofusin 1 GTPase, in 98.5 8.9E-07 1.9E-11 92.5 13.1 100 144-255 207-309 (749)
346 cd01849 YlqF_related_GTPase Yl 98.5 1.7E-07 3.8E-12 83.4 5.3 58 63-153 98-155 (155)
347 cd04092 mtEFG2_II_like mtEFG2_ 98.5 1.5E-06 3.2E-11 68.7 9.4 75 297-375 3-83 (83)
348 cd03690 Tet_II Tet_II: This su 98.4 1.2E-06 2.7E-11 69.4 8.6 77 293-374 2-84 (85)
349 cd03699 lepA_II lepA_II: This 98.4 3.1E-06 6.7E-11 67.3 10.7 79 296-375 2-86 (86)
350 KOG4252 GTP-binding protein [S 98.4 5.7E-08 1.2E-12 84.8 0.7 153 63-263 18-172 (246)
351 cd04088 EFG_mtEFG_II EFG_mtEFG 98.4 1.9E-06 4.2E-11 68.0 9.5 74 298-375 4-83 (83)
352 KOG0083 GTPase Rab26/Rab37, sm 98.4 5.5E-08 1.2E-12 80.7 0.4 145 70-263 2-151 (192)
353 KOG3883 Ras family small GTPas 98.4 1E-05 2.3E-10 69.1 13.1 112 63-216 7-131 (198)
354 cd01851 GBP Guanylate-binding 98.4 3.5E-06 7.6E-11 79.8 11.5 90 61-178 3-103 (224)
355 KOG1673 Ras GTPases [General f 98.4 3.2E-06 6.8E-11 72.4 9.9 157 62-264 17-178 (205)
356 COG5019 CDC3 Septin family pro 98.4 7.3E-06 1.6E-10 80.5 13.6 143 64-241 22-196 (373)
357 cd01855 YqeH YqeH. YqeH is an 98.3 4.9E-07 1.1E-11 83.4 4.8 64 65-153 127-190 (190)
358 cd03691 BipA_TypA_II BipA_TypA 98.3 4.9E-06 1.1E-10 66.2 9.9 76 295-374 1-85 (86)
359 KOG1707 Predicted Ras related/ 98.3 1.3E-06 2.8E-11 89.9 8.1 154 62-264 6-167 (625)
360 KOG1547 Septin CDC10 and relat 98.3 1.1E-05 2.5E-10 74.2 13.2 143 65-242 46-219 (336)
361 PRK09563 rbgA GTPase YlqF; Rev 98.3 1E-06 2.3E-11 86.7 6.6 60 62-154 118-177 (287)
362 cd04091 mtEFG1_II_like mtEFG1_ 98.3 6.2E-06 1.3E-10 64.7 9.5 64 306-374 13-80 (81)
363 COG1161 Predicted GTPases [Gen 98.3 8.2E-07 1.8E-11 88.5 4.7 60 61-153 128-187 (322)
364 cd03689 RF3_II RF3_II: this su 98.2 4.7E-06 1E-10 66.0 7.9 67 305-375 14-84 (85)
365 TIGR03596 GTPase_YlqF ribosome 98.2 1.5E-06 3.2E-11 85.1 6.0 58 63-153 116-173 (276)
366 PRK14974 cell division protein 98.2 9.9E-06 2.1E-10 80.8 11.7 94 141-263 221-321 (336)
367 KOG0393 Ras-related small GTPa 98.2 7.3E-06 1.6E-10 74.6 9.7 155 64-263 3-170 (198)
368 cd01858 NGP_1 NGP-1. Autoanti 98.2 5.7E-06 1.2E-10 73.8 8.6 84 160-264 2-87 (157)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 1.7E-06 3.7E-11 75.7 4.5 54 67-153 85-138 (141)
370 PRK10416 signal recognition pa 98.2 1.4E-05 3E-10 79.5 11.2 95 141-264 195-302 (318)
371 cd01856 YlqF YlqF. Proteins o 98.2 2.8E-06 6E-11 77.0 5.8 58 63-153 113-170 (171)
372 KOG1487 GTP-binding protein DR 98.2 3.1E-06 6.7E-11 78.7 5.9 83 67-180 61-150 (358)
373 cd01859 MJ1464 MJ1464. This f 98.2 8.2E-06 1.8E-10 72.6 8.4 79 164-264 10-88 (156)
374 TIGR00064 ftsY signal recognit 98.1 6.4E-05 1.4E-09 73.2 14.8 64 141-215 153-229 (272)
375 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 1.4E-05 3.1E-10 69.8 9.1 80 158-259 3-84 (141)
376 PRK12288 GTPase RsgA; Reviewed 98.1 3.1E-06 6.8E-11 85.1 5.1 64 67-156 207-270 (347)
377 TIGR01425 SRP54_euk signal rec 98.1 1.9E-05 4.1E-10 81.0 10.8 64 141-215 181-251 (429)
378 PRK12289 GTPase RsgA; Reviewed 98.1 3E-06 6.6E-11 85.2 4.7 22 67-88 174-195 (352)
379 TIGR00092 GTP-binding protein 98.1 8.5E-06 1.8E-10 81.7 7.5 82 66-178 3-109 (368)
380 PRK13796 GTPase YqeH; Provisio 98.1 3.8E-06 8.2E-11 85.4 5.1 62 65-154 160-221 (365)
381 PF03193 DUF258: Protein of un 98.1 2.7E-06 5.8E-11 75.3 3.2 23 66-88 36-58 (161)
382 cd01855 YqeH YqeH. YqeH is an 98.0 2.1E-05 4.6E-10 72.5 9.0 94 156-264 24-117 (190)
383 KOG2655 Septin family protein 98.0 7.8E-05 1.7E-09 74.0 13.1 141 65-241 21-192 (366)
384 TIGR03597 GTPase_YqeH ribosome 98.0 6.4E-06 1.4E-10 83.6 5.7 62 65-154 154-215 (360)
385 cd01856 YlqF YlqF. Proteins o 98.0 1E-05 2.3E-10 73.2 6.5 92 150-265 2-94 (171)
386 TIGR00157 ribosome small subun 98.0 6.1E-06 1.3E-10 79.2 5.2 64 66-156 121-184 (245)
387 KOG1954 Endocytosis/signaling 98.0 2.8E-05 6.1E-10 75.9 9.2 133 64-215 57-223 (532)
388 PF00448 SRP54: SRP54-type pro 98.0 7.9E-06 1.7E-10 75.6 4.8 65 141-216 82-153 (196)
389 cd03114 ArgK-like The function 98.0 8.1E-06 1.8E-10 72.0 4.6 59 141-214 90-148 (148)
390 cd01849 YlqF_related_GTPase Yl 98.0 4.2E-05 9.1E-10 68.0 9.1 77 168-265 1-78 (155)
391 cd03700 eEF2_snRNP_like_II EF2 97.9 7.7E-05 1.7E-09 60.2 9.4 66 305-374 14-92 (93)
392 KOG0096 GTPase Ran/TC4/GSP1 (n 97.9 3.9E-05 8.4E-10 68.2 7.6 148 63-263 8-160 (216)
393 TIGR03596 GTPase_YlqF ribosome 97.9 2.6E-05 5.6E-10 76.4 7.0 90 151-264 5-95 (276)
394 PF00503 G-alpha: G-protein al 97.9 8.5E-05 1.8E-09 76.5 11.2 87 127-215 219-315 (389)
395 COG3640 CooC CO dehydrogenase 97.9 7.9E-05 1.7E-09 69.0 9.6 65 141-215 132-197 (255)
396 PRK14721 flhF flagellar biosyn 97.9 6E-05 1.3E-09 77.3 9.9 65 140-215 267-338 (420)
397 KOG1424 Predicted GTP-binding 97.9 1.3E-05 2.9E-10 81.5 5.0 64 57-153 306-369 (562)
398 PRK14722 flhF flagellar biosyn 97.9 4.5E-05 9.7E-10 77.0 8.7 27 62-88 134-160 (374)
399 PRK11889 flhF flagellar biosyn 97.9 7.3E-05 1.6E-09 75.2 9.8 65 142-216 320-390 (436)
400 KOG2485 Conserved ATP/GTP bind 97.8 2.5E-05 5.3E-10 75.1 5.4 66 62-152 140-205 (335)
401 cd03115 SRP The signal recogni 97.8 0.00013 2.7E-09 66.2 9.9 64 141-215 81-151 (173)
402 COG1162 Predicted GTPases [Gen 97.8 2E-05 4.3E-10 76.3 4.7 65 66-156 165-229 (301)
403 KOG1491 Predicted GTP-binding 97.8 5.9E-05 1.3E-09 73.1 7.6 84 64-178 19-126 (391)
404 TIGR00157 ribosome small subun 97.8 5.4E-05 1.2E-09 72.7 6.9 83 163-264 33-115 (245)
405 cd01859 MJ1464 MJ1464. This f 97.8 3.2E-05 7E-10 68.8 4.9 23 64-86 100-122 (156)
406 PRK12289 GTPase RsgA; Reviewed 97.8 8.5E-05 1.8E-09 74.8 8.3 82 164-265 87-168 (352)
407 KOG3905 Dynein light intermedi 97.7 0.00039 8.4E-09 67.0 12.0 57 199-262 219-280 (473)
408 PRK12723 flagellar biosynthesi 97.7 0.00024 5.1E-09 72.4 11.2 65 141-215 253-324 (388)
409 cd01854 YjeQ_engC YjeQ/EngC. 97.7 3.9E-05 8.4E-10 75.5 5.3 65 66-156 162-226 (287)
410 PRK00098 GTPase RsgA; Reviewed 97.7 0.00012 2.5E-09 72.6 8.2 82 164-264 78-159 (298)
411 PF05783 DLIC: Dynein light in 97.7 0.00047 1E-08 71.9 13.0 56 201-263 195-255 (472)
412 cd04090 eEF2_II_snRNP Loc2 eEF 97.7 0.00034 7.4E-09 56.5 9.5 56 307-364 16-84 (94)
413 cd03112 CobW_like The function 97.7 0.00016 3.5E-09 64.5 8.1 38 142-179 86-131 (158)
414 PRK12724 flagellar biosynthesi 97.7 0.00022 4.7E-09 72.7 9.6 65 141-215 298-371 (432)
415 PRK00098 GTPase RsgA; Reviewed 97.7 5E-05 1.1E-09 75.2 5.0 23 65-87 164-186 (298)
416 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.00013 2.9E-09 71.7 8.0 92 150-265 7-99 (287)
417 cd03110 Fer4_NifH_child This p 97.7 0.00066 1.4E-08 61.8 12.0 65 141-215 91-155 (179)
418 PRK00771 signal recognition pa 97.6 0.00035 7.7E-09 72.3 11.1 63 142-215 175-244 (437)
419 TIGR00487 IF-2 translation ini 97.6 0.00057 1.2E-08 73.6 13.0 179 148-375 392-576 (587)
420 COG1419 FlhF Flagellar GTP-bin 97.6 0.00023 5E-09 71.6 9.0 127 63-216 201-351 (407)
421 CHL00189 infB translation init 97.6 0.00097 2.1E-08 73.2 14.4 180 147-375 548-732 (742)
422 PRK05306 infB translation init 97.6 0.0012 2.7E-08 73.0 15.3 179 148-375 594-778 (787)
423 PRK05703 flhF flagellar biosyn 97.6 0.00034 7.5E-09 72.4 10.4 65 141-215 298-369 (424)
424 KOG2484 GTPase [General functi 97.5 7.6E-05 1.7E-09 73.9 3.8 67 54-153 241-307 (435)
425 KOG0082 G-protein alpha subuni 97.5 0.00097 2.1E-08 66.3 11.3 87 126-215 178-274 (354)
426 PRK12727 flagellar biosynthesi 97.5 0.00034 7.4E-09 73.1 8.3 27 61-87 346-372 (559)
427 PRK12726 flagellar biosynthesi 97.5 0.00048 1E-08 69.2 8.9 25 63-87 204-228 (407)
428 COG0541 Ffh Signal recognition 97.5 0.001 2.2E-08 67.2 11.1 135 62-215 97-251 (451)
429 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00025 5.4E-09 69.8 6.7 80 164-263 76-155 (287)
430 TIGR03597 GTPase_YqeH ribosome 97.4 0.00051 1.1E-08 69.8 9.1 96 154-265 51-146 (360)
431 KOG0447 Dynamin-like GTP bindi 97.4 0.00064 1.4E-08 69.6 8.9 175 48-229 290-506 (980)
432 PRK06731 flhF flagellar biosyn 97.4 0.00086 1.9E-08 65.0 9.5 65 142-216 154-224 (270)
433 KOG3887 Predicted small GTPase 97.4 0.00024 5.2E-09 65.7 5.1 156 66-258 28-189 (347)
434 COG0552 FtsY Signal recognitio 97.4 0.0025 5.4E-08 62.4 12.3 129 63-215 137-296 (340)
435 cd03111 CpaE_like This protein 97.3 0.0014 3E-08 54.2 8.7 60 144-212 44-106 (106)
436 PRK12288 GTPase RsgA; Reviewed 97.3 0.00098 2.1E-08 67.2 9.2 83 164-264 118-200 (347)
437 PRK10867 signal recognition pa 97.3 0.0014 3E-08 67.8 10.2 64 141-215 182-252 (433)
438 cd02036 MinD Bacterial cell di 97.3 0.0022 4.8E-08 58.0 10.5 63 144-215 64-126 (179)
439 KOG4423 GTP-binding protein-li 97.3 7.6E-05 1.6E-09 66.1 0.6 155 65-264 25-186 (229)
440 PRK01889 GTPase RsgA; Reviewed 97.3 0.0011 2.3E-08 67.4 8.9 80 164-264 110-189 (356)
441 PRK13796 GTPase YqeH; Provisio 97.2 0.0014 3E-08 66.8 9.5 93 157-265 59-152 (365)
442 cd02038 FleN-like FleN is a me 97.2 0.004 8.7E-08 54.2 10.7 64 143-215 45-109 (139)
443 TIGR00959 ffh signal recogniti 97.2 0.0023 4.9E-08 66.2 10.4 64 141-215 181-251 (428)
444 KOG1534 Putative transcription 97.2 0.00044 9.5E-09 62.8 4.3 71 143-216 98-177 (273)
445 PRK06995 flhF flagellar biosyn 97.1 0.0012 2.5E-08 69.1 7.7 67 139-215 331-403 (484)
446 KOG0780 Signal recognition par 97.1 0.0013 2.7E-08 65.2 7.4 68 138-215 179-252 (483)
447 COG0532 InfB Translation initi 97.1 0.017 3.6E-07 60.0 15.8 180 148-375 313-497 (509)
448 COG1162 Predicted GTPases [Gen 97.1 0.0021 4.6E-08 62.4 8.7 82 165-264 78-159 (301)
449 KOG2423 Nucleolar GTPase [Gene 97.1 0.00018 3.9E-09 71.0 1.1 37 50-86 292-328 (572)
450 KOG4181 Uncharacterized conser 97.0 0.0059 1.3E-07 59.6 10.8 143 63-238 186-375 (491)
451 PRK14723 flhF flagellar biosyn 97.0 0.0047 1E-07 67.7 11.4 23 65-87 185-207 (767)
452 PRK11537 putative GTP-binding 97.0 0.0089 1.9E-07 59.6 12.2 25 64-88 3-27 (318)
453 smart00275 G_alpha G protein a 97.0 0.0029 6.3E-08 63.8 8.5 86 127-215 168-263 (342)
454 cd00066 G-alpha G protein alph 96.9 0.002 4.4E-08 64.3 7.3 85 128-215 146-240 (317)
455 KOG1533 Predicted GTPase [Gene 96.9 0.0022 4.7E-08 59.4 6.6 73 141-216 95-176 (290)
456 PF02492 cobW: CobW/HypB/UreG, 96.9 0.0031 6.7E-08 57.4 7.8 65 142-215 84-153 (178)
457 TIGR00491 aIF-2 translation in 96.9 0.013 2.9E-07 63.1 13.6 74 301-375 473-549 (590)
458 PF06858 NOG1: Nucleolar GTP-b 96.7 0.0037 8E-08 44.8 5.0 52 159-214 5-58 (58)
459 PRK08099 bifunctional DNA-bind 96.7 0.011 2.4E-07 60.8 10.6 30 63-92 217-246 (399)
460 PF09547 Spore_IV_A: Stage IV 96.7 0.04 8.7E-07 55.8 13.9 29 61-89 13-41 (492)
461 KOG3859 Septins (P-loop GTPase 96.7 0.01 2.2E-07 56.3 9.1 135 65-241 42-210 (406)
462 KOG1707 Predicted Ras related/ 96.7 0.0058 1.2E-07 63.7 8.0 150 57-256 417-568 (625)
463 TIGR03348 VI_IcmF type VI secr 96.6 0.004 8.8E-08 72.8 7.5 25 61-85 107-131 (1169)
464 TIGR02475 CobW cobalamin biosy 96.6 0.025 5.5E-07 57.0 12.3 24 65-88 4-27 (341)
465 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.02 4.4E-07 45.5 9.5 70 68-180 2-72 (99)
466 cd03702 IF2_mtIF2_II This fami 96.6 0.014 3.1E-07 47.0 8.2 72 298-374 4-78 (95)
467 COG1618 Predicted nucleotide k 96.6 0.016 3.5E-07 50.8 8.8 24 63-86 3-26 (179)
468 COG0523 Putative GTPases (G3E 96.5 0.037 8.1E-07 55.1 12.3 91 142-254 84-184 (323)
469 PRK13695 putative NTPase; Prov 96.4 0.029 6.3E-07 50.7 10.3 22 66-87 1-22 (174)
470 cd02042 ParA ParA and ParB of 96.4 0.016 3.4E-07 47.4 7.8 35 143-179 40-74 (104)
471 cd03703 aeIF5B_II aeIF5B_II: T 96.4 0.026 5.7E-07 46.4 8.8 74 298-373 4-92 (110)
472 cd03701 IF2_IF5B_II IF2_IF5B_I 96.2 0.034 7.4E-07 44.9 8.6 58 298-357 4-64 (95)
473 PRK01889 GTPase RsgA; Reviewed 96.2 0.0044 9.5E-08 62.9 3.7 25 64-88 194-218 (356)
474 smart00010 small_GTPase Small 96.0 0.025 5.5E-07 47.3 7.3 20 66-85 1-20 (124)
475 cd04178 Nucleostemin_like Nucl 96.0 0.019 4.1E-07 51.9 6.7 40 168-215 1-42 (172)
476 PRK10751 molybdopterin-guanine 95.9 0.024 5.2E-07 51.1 7.0 23 64-86 5-27 (173)
477 KOG2743 Cobalamin synthesis pr 95.8 0.073 1.6E-06 51.3 9.8 28 59-86 51-78 (391)
478 PF13555 AAA_29: P-loop contai 95.7 0.012 2.5E-07 43.3 3.2 21 67-87 25-45 (62)
479 PRK14845 translation initiatio 95.7 0.21 4.6E-06 57.2 14.7 75 301-375 931-1007(1049)
480 PF13207 AAA_17: AAA domain; P 95.6 0.012 2.7E-07 49.5 3.8 24 67-90 1-24 (121)
481 KOG0781 Signal recognition par 95.6 0.017 3.7E-07 58.9 5.2 146 58-215 371-542 (587)
482 COG3523 IcmF Type VI protein s 95.6 0.023 4.9E-07 65.1 6.8 24 60-83 120-143 (1188)
483 PRK04004 translation initiatio 95.6 0.16 3.4E-06 55.1 12.9 74 301-375 475-551 (586)
484 KOG2484 GTPase [General functi 95.6 0.065 1.4E-06 53.7 9.0 75 146-231 125-201 (435)
485 KOG1144 Translation initiation 95.6 0.12 2.7E-06 55.4 11.4 60 302-361 945-1007(1064)
486 PHA00729 NTP-binding motif con 95.6 0.013 2.9E-07 54.9 4.0 26 64-89 16-41 (226)
487 PRK13833 conjugal transfer pro 95.4 0.038 8.3E-07 55.0 6.9 23 65-87 144-166 (323)
488 cd03222 ABC_RNaseL_inhibitor T 95.4 0.2 4.4E-06 45.4 11.0 24 63-86 23-46 (177)
489 cd03238 ABC_UvrA The excision 95.3 0.014 3E-07 52.9 3.2 27 62-88 18-44 (176)
490 TIGR02782 TrbB_P P-type conjug 95.1 0.048 1E-06 54.0 6.6 24 64-87 131-154 (299)
491 COG1136 SalX ABC-type antimicr 95.1 0.015 3.2E-07 54.5 2.7 23 63-85 29-51 (226)
492 cd02019 NK Nucleoside/nucleoti 95.1 0.019 4.1E-07 43.3 2.7 19 68-86 2-20 (69)
493 PF00437 T2SE: Type II/IV secr 95.0 0.028 6E-07 54.7 4.6 25 63-87 125-149 (270)
494 cd02037 MRP-like MRP (Multiple 95.0 0.08 1.7E-06 47.6 7.1 66 141-215 66-133 (169)
495 PRK07261 topology modulation p 95.0 0.023 4.9E-07 51.4 3.5 21 67-87 2-22 (171)
496 PF13671 AAA_33: AAA domain; P 94.9 0.023 5.1E-07 49.2 3.4 23 68-90 2-24 (143)
497 TIGR00176 mobB molybdopterin-g 94.9 0.15 3.3E-06 45.1 8.5 20 68-87 2-21 (155)
498 cd03116 MobB Molybdenum is an 94.9 0.045 9.7E-07 48.8 5.1 21 66-86 2-22 (159)
499 COG1116 TauB ABC-type nitrate/ 94.9 0.019 4.1E-07 54.2 2.7 23 64-86 28-50 (248)
500 PRK08118 topology modulation p 94.9 0.026 5.6E-07 50.8 3.5 25 66-90 2-26 (167)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-98 Score=727.28 Aligned_cols=423 Identities=45% Similarity=0.799 Sum_probs=409.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++++|++++||+|||||||+++|||++|.++.+.++++++++++.|+.||+++|+||++++||++|+|++.....|++
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
+.+.++|+|||||++|+++|+.++++||++||||||..+.||+||..++||+||+.+++.+|+.++||++||||+ .+|
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~--v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDL--VSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 679
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEE
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 300 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~ 300 (496)
++++|+++++++..+++.+||++. +++|||+||++|+|+.+..+ .+|||+||||+++|+.+..|.+..++|||++|.
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~-~v~FIPiSg~~G~Nl~~~s~--~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~ 237 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPK-DVPFIPISGFKGDNLTKKSE--NMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQ 237 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcc-CCeEEecccccCCcccccCc--CCcCccCChHHHHHhccCCCCCCCCCCeEeEee
Confidence 999999999999999999999853 78999999999999999874 699999999999999999999999999999999
Q ss_pred EEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCCC
Q 010985 301 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 378 (496)
Q Consensus 301 ~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 378 (496)
++| .+.|++..|||++|.|++||+|.++|.+...+|+||++++++++.|.|||+|+++++++...|+++|+|++++++
T Consensus 238 ~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n 317 (428)
T COG5256 238 DVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDN 317 (428)
T ss_pred eEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCC
Confidence 999 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceE
Q 010985 379 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 458 (496)
Q Consensus 379 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi 458 (496)
++..+..|.|++.++++ +..|.+||+|++|+|+...+|++.+|+.++|+.||+..+++|.++++|+.+.|.+++.+|+
T Consensus 318 ~~t~s~~f~a~i~vl~~--p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~ 395 (428)
T COG5256 318 PPTVSPEFTAQIIVLWH--PGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPL 395 (428)
T ss_pred CcccccceEEEEEEEec--CccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCce
Confidence 99998999999999542 3789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 459 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 459 ~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
|+++++++|.||||+|||.|+|||+|+|.++.
T Consensus 396 ~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~ 427 (428)
T COG5256 396 CLEKVSEIPQLGRFALRDMGQTIAAGKVLEVK 427 (428)
T ss_pred EeeecccCCccceEEEEeCCCeEEeEEEEecc
Confidence 99999999999999999999999999999875
No 2
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=3.1e-86 Score=682.52 Aligned_cols=429 Identities=36% Similarity=0.652 Sum_probs=404.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++++||+++||+|||||||+++||+.+|.++.+.+.++++++.+.|+.++.|+|+||..++||++|+|++.....|++
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
.++.++|+|||||++|+++|+.+++.+|++||||||..|.++++++..+||++|+.++..+|+|++|||+||||+...+|
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 99999999999999999999999999999999999999999999988899999999999999998999999999865578
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEE
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 300 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~ 300 (496)
++++|+++.++++.+++..||++ .+++|+|+||++|+|+.+... .++||+|++|+++|+.++.|.+..+.||||+|+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~-~~~~~ipiSa~~G~ni~~~~~--~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNP-DKIPFVPISGFEGDNMIERST--NLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCc-ccceEEEEecccccccccccc--CCcccchHHHHHHHhhcCCCccccCCCcEEEEE
Confidence 89999999999999999999873 357999999999999988655 389999999999999999888888999999999
Q ss_pred EEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecC-C
Q 010985 301 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV-A 377 (496)
Q Consensus 301 ~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~-~ 377 (496)
++| ++.|+|++|+|.+|.|++||+|.++|++..++|++|++++.++++|.|||+|+++|++++..++++|+||+++ +
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~ 319 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKD 319 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCC
Confidence 999 5789999999999999999999999999999999999999999999999999999999998999999999997 4
Q ss_pred CCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECce
Q 010985 378 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 457 (496)
Q Consensus 378 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p 457 (496)
.|+..+++|+|++.||+. ..++..||++++|+|+.+++|+|.+|.+++|.+||+..+++|++|++|+.|.|+|++.+|
T Consensus 320 ~p~~~~~~F~A~i~~l~~--~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~p 397 (447)
T PLN00043 320 DPAKEAANFTSQVIIMNH--PGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKP 397 (447)
T ss_pred CCCccccEEEEEEEEECC--CCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCc
Confidence 677889999999999542 278999999999999999999999999999999998888899999999999999999999
Q ss_pred EEeeeccCcCccceEEEEeCCcEEEEEEEEEcCCCCC
Q 010985 458 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 494 (496)
Q Consensus 458 i~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~~~~ 494 (496)
+|+|+|++||.||||+||++|.|+|+|+|+++...++
T Consensus 398 i~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~~~~ 434 (447)
T PLN00043 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434 (447)
T ss_pred EEEEecccCCCCceEEEEECCCeEEEEEEEEEeccCC
Confidence 9999999999999999999999999999999887544
No 3
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2.2e-84 Score=669.41 Aligned_cols=428 Identities=39% Similarity=0.708 Sum_probs=403.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++.+||+++||+|||||||+++|++.+|.++.+.++++++++.+.|+.++.|+|++|..++|+++|+|++.....|++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
+++.++|+|||||++|+++|+.+++.+|++||||||..|++|++++..+||++|+.++..+|+|++||++||||+..++|
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 99999999999999999999999999999999999999999999987899999999999999999999999999766789
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEE
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 300 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~ 300 (496)
++++|+++.+++..+++.+|+++ .++++||+||++|+|+.++.. .++||+|++|++.|+.+++|.+..++||||+|+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~-~~~~~ipiSa~~g~ni~~~~~--~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNP-EKVPFIPISGWQGDNMIEKSD--NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQ 239 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCc-ccceEEEeecccCCCcccCCC--CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEE
Confidence 99999999999999999999862 368999999999999987654 489999999999999998888888899999999
Q ss_pred EEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCC-
Q 010985 301 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA- 377 (496)
Q Consensus 301 ~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~- 377 (496)
++| ++.|+|++|+|.+|.|++||+|.++|++..++|++|++++.++++|.|||+|+++|++++..++++|+||++++
T Consensus 240 ~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~ 319 (446)
T PTZ00141 240 DVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKN 319 (446)
T ss_pred EEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCC
Confidence 999 57899999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECce
Q 010985 378 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 457 (496)
Q Consensus 378 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p 457 (496)
.|+..+++|+|+|.||+. ..+|+.||++++|||+.+++|+|..|.+++|++||+..+++|++|++|+.+.|+|++++|
T Consensus 320 ~p~~~~~~f~a~i~~l~~--~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~p 397 (446)
T PTZ00141 320 DPAKECADFTAQVIVLNH--PGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKP 397 (446)
T ss_pred CCCccceEEEEEEEEECC--CCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCc
Confidence 566778999999999542 268999999999999999999999999999999998888899999999999999999999
Q ss_pred EEeeeccCcCccceEEEEeCCcEEEEEEEEEcCCCC
Q 010985 458 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVS 493 (496)
Q Consensus 458 i~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~~~ 493 (496)
+|+++|++|+.+|||+||+.|+|+|+|+|+++...+
T Consensus 398 i~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~ 433 (446)
T PTZ00141 398 MCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKE 433 (446)
T ss_pred eEEeecccCCCCccEEEEECCCEEEEEEEEEEecCC
Confidence 999999999999999999999999999999987654
No 4
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-85 Score=625.22 Aligned_cols=428 Identities=61% Similarity=0.995 Sum_probs=415.9
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEE
Q 010985 58 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 137 (496)
Q Consensus 58 ~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~ 137 (496)
.+...+.++|++++||+++||||+-+.+++.+|.++.+.+++|.+++++.+|.||+++|.||+..+||..|-|+..+..+
T Consensus 72 ~~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~ 151 (501)
T KOG0459|consen 72 CGEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAY 151 (501)
T ss_pred ccCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 010985 138 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 138 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~ 217 (496)
|++..+.++++|+|||..|+.+|+.++++||+++||++|..|.||.+|+.++||++|..+++.+++.++||++||||-+.
T Consensus 152 FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 152 FETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred EEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEE
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 297 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~ 297 (496)
++|+++||+++.+.+..+|+.+||++.++..++|+|+.+|.|+.+..+ ..||||.|+++++.|+.++...+..+.|+++
T Consensus 232 vnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~-s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~ 310 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD-SVCPWYKGPIFLEYLDELPHLERILNGPIRC 310 (501)
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc-ccCCcccCCccceehhccCcccccCCCCEEe
Confidence 999999999999999999999999988889999999999999999887 7899999999999999999989999999999
Q ss_pred EEEEEEccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCC
Q 010985 298 PIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 298 ~i~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
+|.+-|++.|+|+.|+|+||+++.||.++++|.+..+.|.+|......++.+.||+++.+.|+|+...++..|.|||+++
T Consensus 311 pI~~KykdmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~ 390 (501)
T KOG0459|consen 311 PVANKYKDMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPN 390 (501)
T ss_pred ehhhhccccceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECc
Q 010985 378 KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 456 (496)
Q Consensus 378 ~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~ 456 (496)
++..+.+.|.|+|.++ .+ ..|.+||.++||+|+...+|.| ++++.+|++||.+.++.|+|++.|+.+.++|+...
T Consensus 391 n~~~s~~~F~aqi~Il---E~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~ 466 (501)
T KOG0459|consen 391 NPCKSGRTFDAQIVIL---EHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEG 466 (501)
T ss_pred CccccccEEEEEEEEE---ecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecCC
Confidence 9999999999999994 45 7899999999999999999999 77899999999999999999999999999999999
Q ss_pred eEEeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 457 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 457 pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
|||+|+|.+||.+|||.|||+|+|||+|+|+++.
T Consensus 467 ~iCle~fkd~pqmgRFtLRdegkTIAiGkV~kv~ 500 (501)
T KOG0459|consen 467 PICLETFKDYPQMGRFTLRDEGKTIAIGKVLKVV 500 (501)
T ss_pred cEehhhcccchhhcceEEecCCcEEEEEEEEeec
Confidence 9999999999999999999999999999999875
No 5
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-83 Score=639.04 Aligned_cols=427 Identities=37% Similarity=0.692 Sum_probs=407.3
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEE
Q 010985 59 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 138 (496)
Q Consensus 59 ~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~ 138 (496)
+...+.+++.+++||+|||||||+|+|||..|.+..+.|.++++++...|+.||.|+|++|.+++||+||+|+++....|
T Consensus 171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 33556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 139 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
+...+.++|+|+|||++|+.+|+.++.+||+++|||||+.+.||+||...+||+||+.+++.+|+.++||++||||+ +
T Consensus 251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~--V 328 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDL--V 328 (603)
T ss_pred ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CccHHHHHHHHHHHHHHH-HhcCCCccCCeeEEeeccccccccccccc-cCCCCCCChhhHHHHHhccCCCCCCCCCCeE
Q 010985 219 NWSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRVD-KSLCPWWNGPCLFEALDRIEITPRDPNGPFR 296 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l-~~~~~~~~~~~~~ipiSa~~g~gi~~l~~-~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~ 296 (496)
+|+++||++|++.+..+| +.+||. ..++.|||||+++|+|+....+ +.+..||+||||++.|+.+..|.++.++||+
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~-es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ 407 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFK-ESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLR 407 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcc-cCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeE
Confidence 999999999999999999 788998 4578999999999999998744 3667899999999999999888888999999
Q ss_pred EEEEEEEc--cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEe
Q 010985 297 MPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 374 (496)
Q Consensus 297 ~~i~~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 374 (496)
+.|.++++ +.|..++|+|++|.|++||+|+++|+...++|++|.+++++...|.|||.|.+.|.++....+..|++++
T Consensus 408 ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 408 LTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred EEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeee
Confidence 99999995 5677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCCCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEE
Q 010985 375 -SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQ 453 (496)
Q Consensus 375 -~~~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~ 453 (496)
.+..+...+..|.+++.+|+. +.|+..|.+..+|.|+...+|++.++...+++.||+..++.|++|..|+.|.++++
T Consensus 488 ~~~~~~i~~~~~f~~~~~~f~~--~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele 565 (603)
T KOG0458|consen 488 SGPQFPISKTTRFVARITTFDI--NLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVELE 565 (603)
T ss_pred cCCCccccceeEEEEEEEEeec--cccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeecc
Confidence 777888888999999999773 46888999999999999999999999999999999999999999999999999999
Q ss_pred ECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 454 VNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 454 ~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
...|||+++|.+|+.+|||++|..|+|||+|+|+++-
T Consensus 566 ~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 566 TERPICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred ccCchhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 9999999999999999999999999999999999874
No 6
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=3.2e-80 Score=641.01 Aligned_cols=417 Identities=38% Similarity=0.702 Sum_probs=391.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.++.+||+++||+|||||||+|+|++..|.++.+.++++++++.+.|+.++.++|++|..++|+++|+|+|.....++++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCC--CccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK--GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~--g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~ 219 (496)
++.++|+|||||++|.++++.+++.+|++|+|||+++ +. ..++++|+.++..+++++++||+||+|+ .+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~-------~~~~~~~~~~~~~~~~~~iivviNK~Dl--~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV-------MPQTREHVFLARTLGINQLIVAINKMDA--VN 153 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCC-------CcchHHHHHHHHHcCCCeEEEEEEcccc--cc
Confidence 9999999999999999999999999999999999997 53 3789999999999998779999999999 45
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEE
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 299 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i 299 (496)
+++++++++.+++..+++..++.+ ..++++|+||++|.|+.++.+ .++||+|++|+++|+.++.|.+..++||+|+|
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~-~~~~ii~iSA~~g~gi~~~~~--~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i 230 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKP-DDIPFIPVSAFEGDNVVKKSE--NMPWYNGPTLLEALDNLKPPEKPTDKPLRIPI 230 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCc-CcceEEEeecccCCCcccccc--CCCcccHHHHHHHHhcCCCCccccCCCcEEEE
Confidence 677788889999999999888752 246899999999999999875 48999999999999999988888899999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCC
Q 010985 300 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 300 ~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
+++| ++.|+|++|+|.+|+|++||.|.++|++..++|++|++++.+++.|.|||+|+++|++++..++++|++|++++
T Consensus 231 ~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 231 QDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred EEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 9999 58899999999999999999999999999999999999999999999999999999999989999999999998
Q ss_pred CCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECce
Q 010985 378 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 457 (496)
Q Consensus 378 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p 457 (496)
.++..+++|+|++.||+. ..+++.||++++|+|+.+++|+|..|.+.+|++|++..+++|++|++|+.|.|+|+|.+|
T Consensus 311 ~~~~~~~~f~a~v~~l~~--~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p 388 (425)
T PRK12317 311 NPPTVAEEFTAQIVVLQH--PSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKP 388 (425)
T ss_pred CCCCcccEEEEEEEEECC--CCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCe
Confidence 888889999999999542 268999999999999999999999999999999999888899999999999999999999
Q ss_pred EEeeeccCcCccceEEEEeCCcEEEEEEEEEcCCC
Q 010985 458 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 492 (496)
Q Consensus 458 i~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~~ 492 (496)
+|+++|++|+.+|||+||++|+|+|+|+|+++.++
T Consensus 389 ~~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~ 423 (425)
T PRK12317 389 LVIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPA 423 (425)
T ss_pred eEEEeCCcCCCCccEEEEECCCeEEEEEEEEeccC
Confidence 99999999999999999999999999999998765
No 7
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=5.1e-79 Score=631.75 Aligned_cols=421 Identities=38% Similarity=0.690 Sum_probs=392.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++.++|+++||+|||||||+++|++.+|.++.+.+.++++++...|+.++.|+|++|..++|+++|+|+|.....+.+
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
+++.++|+|||||++|.+++..++..+|++|||||++.+.++ ...++.+|+.++..++++++|||+||+|+ .++
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl--~~~ 156 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE----VQPQTREHAFLARTLGINQLIVAINKMDS--VNY 156 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc----cCCchHHHHHHHHHcCCCeEEEEEEChhc--cCc
Confidence 999999999999999999999999999999999999998543 23689999988888888779999999999 556
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEE
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 300 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~ 300 (496)
++++++++.+++..+++..++.. ..++++|+||++|.|+.++.. .+|||+|++|+++|+.+++|.+..++||+|+|+
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~-~~~~~i~iSA~~g~ni~~~~~--~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~ 233 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNP-DTVPFIPISAWNGDNVIKKSE--NTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQ 233 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCc-ccceEEEeecccccccccccc--CCccccchHHHHHHhcCCCCCCccCCCcEEEEE
Confidence 78889999999999999988752 357899999999999998765 389999999999999998888888899999999
Q ss_pred EEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCCC
Q 010985 301 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 378 (496)
Q Consensus 301 ~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 378 (496)
++| ++.|+|++|+|.+|+|++||.|.++|.+..++|++|++++.++++|.|||+|+++|++++..++++|++|++++.
T Consensus 234 ~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 234 DVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred EEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCC
Confidence 999 588999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceE
Q 010985 379 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 458 (496)
Q Consensus 379 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi 458 (496)
+++.+++|+|++.||+. ..+|..||++++|+|+.+++|+|..|.+++|+++++..+++|++|++|+.+.|+|+|++|+
T Consensus 314 ~~~~~~~f~a~v~~l~~--~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi 391 (426)
T TIGR00483 314 PPKVAKEFTAQIVVLQH--PGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPM 391 (426)
T ss_pred CCceeeEEEEEEEEECC--CCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCee
Confidence 88889999999999542 2689999999999999999999999999999999998889999999999999999999999
Q ss_pred EeeeccCcCccceEEEEeCCcEEEEEEEEEcCCC
Q 010985 459 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 492 (496)
Q Consensus 459 ~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~~ 492 (496)
|+++|++|+.+|||+||++|+|||+|+|+++..+
T Consensus 392 ~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~~~ 425 (426)
T TIGR00483 392 VIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVDPT 425 (426)
T ss_pred EEeecccCCCCccEEEEECCCEEEEEEEEEeeec
Confidence 9999999999999999999999999999988753
No 8
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.5e-75 Score=608.05 Aligned_cols=410 Identities=28% Similarity=0.443 Sum_probs=375.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCcc--chhhhhhcCCchhhhhcccEEeeeeEEE
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHF 138 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~--s~~~~~~~d~~~~e~~~G~T~~~~~~~~ 138 (496)
..++.++|+++||+|||||||+++||+.+|.++.+.+.++++++...|++ ++.++|+||..++|+++|+|++.....+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 45677999999999999999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 139 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
+++++.++|+|||||++|.+++..++..+|++|+||||..|.. .||++|+.++..++++++||++||||+ .
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-------~qt~~~~~l~~~lg~~~iIvvvNKiD~--~ 173 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-------DQTRRHSFIATLLGIKHLVVAVNKMDL--V 173 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------ccchHHHHHHHHhCCCceEEEEEeecc--c
Confidence 9999999999999999999999999999999999999999854 699999999999998879999999999 5
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEE
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 298 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~ 298 (496)
++++++++++.+++..+++.+++. ...+++|+||++|+|+..+.. .++||+|++|+++|+.++.|.+..+.|+||+
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~--~~~~iipvSA~~g~ni~~~~~--~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~ 249 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGN--LDIRFVPLSALEGDNVVSQSE--SMPWYSGPTLLEVLETVDIQRVVDAQPFRFP 249 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCC--CCceEEEEEeecCCCcccccc--cccccchhhHHHHHhhcCCCCCCCCCCceee
Confidence 567888999999998888887742 257899999999999998764 4899999999999999988878888999999
Q ss_pred EEEEEcc--CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecC
Q 010985 299 IIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 376 (496)
Q Consensus 299 i~~~~~~--~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~ 376 (496)
|+++++. ....+.|+|.+|+|++||+|.++|++..++|++|++++.+++.|.|||+|+++|++ ..++++|+||+++
T Consensus 250 I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~ 327 (474)
T PRK05124 250 VQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAA 327 (474)
T ss_pred EEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECC
Confidence 9998742 12237899999999999999999999999999999999999999999999999985 5679999999999
Q ss_pred CCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECc
Q 010985 377 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 456 (496)
Q Consensus 377 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~ 456 (496)
+.++..++.|+|++.||+ ..+|+.||++++|+|+.+++|+|..|.+++|++||+. .+|.+|++|+.+.|+|++++
T Consensus 328 ~~~~~~~~~f~a~i~~l~---~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~--~~~~~l~~g~~a~v~l~~~~ 402 (474)
T PRK05124 328 DEALQAVQHASADVVWMA---EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQ--REAENLPLNGIGLVELTFDE 402 (474)
T ss_pred CCCCccceEEEEEEEEeC---CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcc--cCccccCCCCEEEEEEEECC
Confidence 888888999999999954 4679999999999999999999999999999999874 46889999999999999999
Q ss_pred eEEeeeccCcCccceEEEE--eCCcEEEEEEEEEcC
Q 010985 457 SICTEKFADFAQLGRFTLR--TEGKTVAVGKVTELP 490 (496)
Q Consensus 457 pi~~e~~~~~~~lgrfilr--~~g~tva~G~V~~v~ 490 (496)
|+|+++|.+||.||||+|| ++++|||+|+|+++.
T Consensus 403 pv~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 403 PLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred eeccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 9999999999999999995 579999999999876
No 9
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-76 Score=554.68 Aligned_cols=409 Identities=31% Similarity=0.502 Sum_probs=380.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcC--ccchhhhhhcCCchhhhhcccEEeeeeEEE
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKS--RESWYMAYIMDTNEEERIKGKTVEVGRAHF 138 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g--~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~ 138 (496)
..+..+++..+|++|.|||||+|+|||++..+.++++..+++.+...| ...+.++.++|-++.||+.|+|+|+.+.+|
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 356789999999999999999999999999999999999988886444 456889999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 139 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
.++.++|.+.|||||+.|.++|.+|++.||++|++|||..|+. .||++|..++..||++++++++||||| +
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-------~QTrRHs~I~sLLGIrhvvvAVNKmDL--v 152 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-------EQTRRHSFIASLLGIRHVVVAVNKMDL--V 152 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-------HHhHHHHHHHHHhCCcEEEEEEeeecc--c
Confidence 9999999999999999999999999999999999999999976 599999999999999999999999999 9
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEE
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 298 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~ 298 (496)
+|++++|++|..+...+.+++|+. ...+||+||+.|+|+...++ .||||+||+|++.|+.+........+|||||
T Consensus 153 dy~e~~F~~I~~dy~~fa~~L~~~---~~~~IPiSAl~GDNV~~~s~--~mpWY~GptLLe~LE~v~i~~~~~~~~~RfP 227 (431)
T COG2895 153 DYSEEVFEAIVADYLAFAAQLGLK---DVRFIPISALLGDNVVSKSE--NMPWYKGPTLLEILETVEIADDRSAKAFRFP 227 (431)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCC---cceEEechhccCCccccccc--CCCcccCccHHHHHhhccccccccccceeec
Confidence 999999999999999999999987 56899999999999998755 5999999999999999988777778899999
Q ss_pred EEEEEcc-C-CeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecC
Q 010985 299 IIDKFKD-M-GTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 376 (496)
Q Consensus 299 i~~~~~~-~-G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~ 376 (496)
|+.+.+. . =+-+.|+|.+|++++||.|.+.|+++..+|++|..+...+.+|.+|+.|++.|. +..++.||++++..
T Consensus 228 VQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~ 305 (431)
T COG2895 228 VQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAA 305 (431)
T ss_pred eEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEcc
Confidence 9999842 2 233899999999999999999999999999999999999999999999999998 77899999999999
Q ss_pred CCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECc
Q 010985 377 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 456 (496)
Q Consensus 377 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~ 456 (496)
+.+|..+..|.|.++| +...++.+|..+.+.+++..+.++|..|.+++|.+|.+.. .++.|..|+.+.|++.+++
T Consensus 306 ~~~~~~~~~f~A~vvW---m~~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~--~a~~l~lN~Ig~v~i~~~~ 380 (431)
T COG2895 306 DAPPAVADAFDADVVW---MDEEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQE--GAESLPLNEIGRVRISFDK 380 (431)
T ss_pred CCCcchhhhcceeEEE---ecCCCCCCCceEEEEecceEEEEEeeeeEEEEeccccccc--cccccCCCcceEEEEecCC
Confidence 9999999999999999 5567899999999999999999999999999999998755 6788999999999999999
Q ss_pred eEEeeeccCcCccceEEEEeC--CcEEEEEEEEEcC
Q 010985 457 SICTEKFADFAQLGRFTLRTE--GKTVAVGKVTELP 490 (496)
Q Consensus 457 pi~~e~~~~~~~lgrfilr~~--g~tva~G~V~~v~ 490 (496)
|+++++|.+|+.+|+|||.|. +.|+|+|+|.+-.
T Consensus 381 pi~fd~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l 416 (431)
T COG2895 381 PIAFDAYAENRATGSFILIDRLTNGTVGAGMILASL 416 (431)
T ss_pred ceeecccccCcccccEEEEEcCCCCceeceeeechh
Confidence 999999999999999999886 7899999998654
No 10
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=2.4e-75 Score=598.34 Aligned_cols=400 Identities=29% Similarity=0.496 Sum_probs=370.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCcc--chhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~--s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
++|+++||+|||||||+++||+.+|.++.+.+.++++++...|++ ||.|+|+||..++|+++|+|++.....++++++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999999999999999999999999999986 799999999999999999999999999999999
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHH
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.++|+|||||++|+++|..++..+|++|+||||..|.. +||++|+.++..++++++|||+||||+ .+++++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-------~qt~~~~~~~~~~~~~~iivviNK~D~--~~~~~~ 151 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-------EQTRRHSYIASLLGIRHVVLAVNKMDL--VDYDEE 151 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------cccHHHHHHHHHcCCCcEEEEEEeccc--ccchHH
Confidence 99999999999999999999999999999999999864 699999999999999889999999999 556778
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEEE
Q 010985 224 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 303 (496)
Q Consensus 224 ~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~~ 303 (496)
+++++.+++..+++.+++. +++++|+||++|.|+.++.+ .++||+|++|.++|+.++.|.+..++|||++|++++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~ 226 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFR---DVTFIPLSALKGDNVVSRSE--SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVN 226 (406)
T ss_pred HHHHHHHHHHHHHHHcCCC---CccEEEeecccCCCCccccc--CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEe
Confidence 8899999999999888875 57899999999999998765 489999999999999998888888899999999987
Q ss_pred c--cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCCCCcc
Q 010985 304 K--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVA 381 (496)
Q Consensus 304 ~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~ 381 (496)
+ ..+..+.|+|.+|+|++||+|.++|++..++|++|++++.++++|.|||+|+++|++ ..++++|++|++++.+++
T Consensus 227 ~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~ 304 (406)
T TIGR02034 227 RPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPE 304 (406)
T ss_pred ecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCC
Confidence 4 223347899999999999999999999999999999999999999999999999984 567999999999988888
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEee
Q 010985 382 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 461 (496)
Q Consensus 382 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 461 (496)
.+..|+|++.+|+ +.+|+.||++++|+|+.+++|+|..|.+++|++||+. .+|++|++|+.+.|+|++++|+|++
T Consensus 305 ~~~~f~a~i~~l~---~~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~--~~~~~l~~~~~~~v~l~~~~p~~~~ 379 (406)
T TIGR02034 305 VADQFAATLVWMA---EEPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEK--GAAKSLELNEIGRVNLSLDEPIAFD 379 (406)
T ss_pred cceEEEEEEEEeC---hhhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcc--cCCcccCCCCEEEEEEEECCeeccC
Confidence 8999999999954 5689999999999999999999999999999999974 4578999999999999999999999
Q ss_pred eccCcCccceEEE--EeCCcEEEEEEE
Q 010985 462 KFADFAQLGRFTL--RTEGKTVAVGKV 486 (496)
Q Consensus 462 ~~~~~~~lgrfil--r~~g~tva~G~V 486 (496)
+|++++.||||+| |++|+|||+|+|
T Consensus 380 ~~~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 380 PYAENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred cccCCCcceeEEEEECCCCCeEEEEeC
Confidence 9999999999999 667999999986
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=7.6e-72 Score=603.20 Aligned_cols=412 Identities=29% Similarity=0.460 Sum_probs=377.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCc--cchhhhhhcCCchhhhhcccEEeeeeEEE
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRAHF 138 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~G~T~~~~~~~~ 138 (496)
..++.++|+++||+|||||||+|+|++..|.++.+.+.++++++...|. .++.++|++|..++|+++|+|++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 4556789999999999999999999999999999999999999999997 78999999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 139 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
++++..++|+|||||++|.+++..++..+|++|||||+..|.. +||++|+.++..++++++|||+||||+ +
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-------~~t~e~~~~~~~~~~~~iivvvNK~D~--~ 170 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-------TQTRRHSFIASLLGIRHVVLAVNKMDL--V 170 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-------ccCHHHHHHHHHhCCCeEEEEEEeccc--c
Confidence 9999999999999999999999999999999999999999854 699999999999998889999999999 5
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEE
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 298 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~ 298 (496)
+|++++++++..++..+++.+++. +.+++|+||++|.|+.++.. .++||.|++|+++|+.++.+.+..++|||++
T Consensus 171 ~~~~~~~~~i~~~i~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~ 245 (632)
T PRK05506 171 DYDQEVFDEIVADYRAFAAKLGLH---DVTFIPISALKGDNVVTRSA--RMPWYEGPSLLEHLETVEIASDRNLKDFRFP 245 (632)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCC---CccEEEEecccCCCcccccc--CCCcccHhHHHHHHhcCCCCCCcCCCCceee
Confidence 567888999999999999988875 57899999999999998765 3899999999999999988777788999999
Q ss_pred EEEEEcc--CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecC
Q 010985 299 IIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 376 (496)
Q Consensus 299 i~~~~~~--~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~ 376 (496)
|.++++. .+..+.|+|.+|+|++||+|.++|++..++|++|++++.++++|.|||+|+++|++ ..++++|+||+++
T Consensus 246 i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~ 323 (632)
T PRK05506 246 VQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARA 323 (632)
T ss_pred EEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecC
Confidence 9998752 22347899999999999999999999999999999999999999999999999984 4679999999999
Q ss_pred CCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECc
Q 010985 377 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 456 (496)
Q Consensus 377 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~ 456 (496)
+.+++.++.|+|++.||+ +.++..||++++|+|+.+++|+|..|.+++|++|++. ++|++|++|+.+.|+|++++
T Consensus 324 ~~~~~~~~~f~a~i~~l~---~~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g~~~~v~l~~~~ 398 (632)
T PRK05506 324 DNRPEVADQFDATVVWMA---EEPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELNEIGRCNLSTDA 398 (632)
T ss_pred CCCCcceeEEEEEEEEec---ccccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCCCEEEEEEEECC
Confidence 888888999999999954 5567799999999999999999999999999998873 68999999999999999999
Q ss_pred eEEeeeccCcCccceEEEEe--CCcEEEEEEEEEcCCCC
Q 010985 457 SICTEKFADFAQLGRFTLRT--EGKTVAVGKVTELPTVS 493 (496)
Q Consensus 457 pi~~e~~~~~~~lgrfilr~--~g~tva~G~V~~v~~~~ 493 (496)
|+|+++|.+||.||||+||| +|+|||+|+|++..+..
T Consensus 399 pi~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~~~ 437 (632)
T PRK05506 399 PIAFDPYARNRTTGSFILIDRLTNATVGAGMIDFALRRA 437 (632)
T ss_pred EEeeeeccccccCceEEEEeccCCceEEEEEECcccccc
Confidence 99999999999999999965 89999999999877643
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.3e-67 Score=542.82 Aligned_cols=389 Identities=28% Similarity=0.470 Sum_probs=340.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++.+||+++||+|+|||||+++|++..+.+..+...+ ...+|..++|+++|+|++.....|++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 568899999999999999999999999888765443211 23689999999999999999999999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
+++.++|+|||||++|+++|+.++..+|++|+||||.+|.. +||++|+.++..+|+|++||++||||+ .+
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-------~qt~e~~~~~~~~gi~~iIvvvNK~Dl--~~- 211 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQ--VD- 211 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEecccc--cC-
Confidence 99999999999999999999999999999999999999853 799999999999999989999999999 33
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc---cccCCCCCCC-hhhHHHHHhcc-CCCCCCCCCCe
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR---VDKSLCPWWN-GPCLFEALDRI-EITPRDPNGPF 295 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l---~~~~~~~w~~-g~~L~~~l~~l-~~~~~~~~~p~ 295 (496)
.++.++.+.+++..+|+.+||+ ..+++++|+||++|.|+... ......+||+ +++|++.|+.+ +.|.++.++||
T Consensus 212 ~~~~~~~i~~~i~~~l~~~g~~-~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~ 290 (478)
T PLN03126 212 DEELLELVELEVRELLSSYEFP-GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPF 290 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccce
Confidence 3566888888999999999886 34789999999999877421 1112358998 57899988874 45777788999
Q ss_pred EEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceee
Q 010985 296 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 371 (496)
Q Consensus 296 ~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 371 (496)
+|+|+++| ++.|+|++|+|.+|.|++||.|.++|.+ ..++|++|++++.+++.|.|||+|+++|++++..++++|+
T Consensus 291 r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~ 370 (478)
T PLN03126 291 LLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGM 370 (478)
T ss_pred eeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCcc
Confidence 99999999 5889999999999999999999999975 5789999999999999999999999999999999999999
Q ss_pred EEecCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEE
Q 010985 372 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 448 (496)
Q Consensus 372 vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~ 448 (496)
||++++. +++++.|+|++.||+... +.+|..||++++|+|+.+++|+|..|....+ ++|++|++|+.+
T Consensus 371 VL~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~~l~~gd~a 441 (478)
T PLN03126 371 VLAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESKMVMPGDRV 441 (478)
T ss_pred EEecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCccEeCCCCEE
Confidence 9999874 556899999999976421 3589999999999999999999999865432 357889999999
Q ss_pred EEEEEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 449 VCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 449 ~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
.|+|+|++|+|+++ ++||+||+.|+|+|+|+|+++.
T Consensus 442 ~v~l~~~~Pi~~~~------~~RfilR~~~~Tva~G~V~~v~ 477 (478)
T PLN03126 442 KMVVELIVPVACEQ------GMRFAIREGGKTVGAGVIQSII 477 (478)
T ss_pred EEEEEECCeEEEcc------CCEEEEecCCceEEEEEEEEec
Confidence 99999999999987 5899999999999999999875
No 13
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.3e-66 Score=529.51 Aligned_cols=380 Identities=30% Similarity=0.433 Sum_probs=332.4
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 60 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 60 ~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
+..++.++|+++||+|||||||+++|++..+ ..|+.++...+.+|.+++|+++|+|++.....++
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~ 71 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE 71 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCCcccchhhhccCChhHHhcCceEEEeeeEEc
Confidence 3567889999999999999999999986432 2355555445689999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~ 219 (496)
+++..++|+|||||++|++++++++..+|++++|||+..|.. +|+++|+.++..+++|.+||++||||+. +
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-------~qt~e~l~~~~~~gi~~iivvvNK~Dl~--~ 142 (396)
T PRK12735 72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFLNKCDMV--D 142 (396)
T ss_pred CCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEecCCc--c
Confidence 999999999999999999999999999999999999998853 6999999999999999777789999993 2
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCCh-hhHHHHHhc-cCCCCCCCCCCeEE
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRM 297 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~p~~~ 297 (496)
.++.++.+.+++..+++.+++.. .+++++|+||++|.|... .++||.+ ++|++.|+. ++.|.+..++||++
T Consensus 143 -~~~~~~~~~~ei~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~-----~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~ 215 (396)
T PRK12735 143 -DEELLELVEMEVRELLSKYDFPG-DDTPIIRGSALKALEGDD-----DEEWEAKILELMDAVDSYIPEPERAIDKPFLM 215 (396)
T ss_pred -hHHHHHHHHHHHHHHHHHcCCCc-CceeEEecchhccccCCC-----CCcccccHHHHHHHHHhcCCCCCccCCCCeEE
Confidence 34567778888999999988752 358999999999999643 3789965 899998887 56677788899999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEE
Q 010985 298 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 373 (496)
Q Consensus 298 ~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 373 (496)
+|+++| ++.|+|++|+|.+|+|++||+|+++|. +..++|++|+++++++++|.|||+|+++|++++..++++|+||
T Consensus 216 ~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl 295 (396)
T PRK12735 216 PIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVL 295 (396)
T ss_pred EEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEE
Confidence 999999 588999999999999999999999997 4789999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEE
Q 010985 374 SSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVC 450 (496)
Q Consensus 374 ~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v 450 (496)
++++ ++++++.|+|++.+|+... +.+|..||++++|+|+.+++|+|.. .++|++|++|+.+.|
T Consensus 296 ~~~~-~~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v 361 (396)
T PRK12735 296 AKPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIEL-------------PEGVEMVMPGDNVKM 361 (396)
T ss_pred EcCC-CCCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEc-------------cCCCceeCCCCEEEE
Confidence 9987 4567899999999976321 3578999999999999999999742 235778999999999
Q ss_pred EEEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 451 RIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 451 ~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
+|+|++|+|++++ |||+||++|+|+|+|+|+++.
T Consensus 362 ~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 395 (396)
T PRK12735 362 TVELIAPIAMEEG------LRFAIREGGRTVGAGVVAKII 395 (396)
T ss_pred EEEECceEEEeEC------CEEEEEcCCcEEEEEEEEEec
Confidence 9999999999985 899999999999999999875
No 14
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=2.8e-66 Score=532.26 Aligned_cols=390 Identities=31% Similarity=0.470 Sum_probs=340.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++.++|+++||+|||||||+|+|++..|.++.... +.+ ..+|..++|+++|+|++.....|++
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~--------------~~~-~~~d~~~~e~~rg~T~~~~~~~~~~ 72 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA--------------KKY-DEIDSAPEEKARGITINTAHVEYET 72 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc--------------ccc-ccccCChhhhcCCEeEEccEEEEcc
Confidence 4678899999999999999999999988887654331 111 2689999999999999999999999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
++..++|+|||||++|++++++++..+|++++||||..|.. +|+++|+.++..+++|++|+++||||+ .+
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~~~~~~~~~~g~~~iIvvvNK~D~--~~- 142 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTKEHILLAKQVGVPNIVVFLNKEDQ--VD- 142 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEccCC--CC-
Confidence 99999999999999999999999999999999999999853 699999999999999988899999999 33
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccccc---CCCCCCCh-hhHHHHHhc-cCCCCCCCCCCe
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK---SLCPWWNG-PCLFEALDR-IEITPRDPNGPF 295 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~---~~~~w~~g-~~L~~~l~~-l~~~~~~~~~p~ 295 (496)
.++.++.+.+++..+|+..+++. ..+|++|+||++|+|+...... ...+||++ ++|++.|+. ++.|.++.+.||
T Consensus 143 ~~~~~~~~~~~l~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~ 221 (409)
T CHL00071 143 DEELLELVELEVRELLSKYDFPG-DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPF 221 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCE
Confidence 24567788889999999998863 3589999999999998754322 12589985 999999887 466777788999
Q ss_pred EEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceee
Q 010985 296 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 371 (496)
Q Consensus 296 ~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 371 (496)
+|+|+++| ++.|+|++|+|.+|+|++||.|.+.|. +..++|++|+++++++++|.|||+|+++|++++..++++|+
T Consensus 222 r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~ 301 (409)
T CHL00071 222 LMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGM 301 (409)
T ss_pred EEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeE
Confidence 99999999 688999999999999999999998874 57799999999999999999999999999999889999999
Q ss_pred EEecCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEE
Q 010985 372 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 448 (496)
Q Consensus 372 vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~ 448 (496)
+|++++. ++++++|+|++.+|+... ..+|..||++++|+|+.+++|+|..|... + .++|++|++|+.+
T Consensus 302 vl~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~----~~~~~~l~~g~~a 372 (409)
T CHL00071 302 VLAKPGT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----D----GSKTEMVMPGDRI 372 (409)
T ss_pred EEecCCC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----C----CCCCcEecCCCEE
Confidence 9999874 567899999999976432 36799999999999999999999988643 1 2568899999999
Q ss_pred EEEEEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcCC
Q 010985 449 VCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 491 (496)
Q Consensus 449 ~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~ 491 (496)
.|+|++++|+|++++ |||+||+.|+|+|+|+|+++.+
T Consensus 373 ~v~l~~~~pi~~e~~------~rfilR~~~~tig~G~V~~~~~ 409 (409)
T CHL00071 373 KMTVELIYPIAIEKG------MRFAIREGGRTVGAGVVSKILK 409 (409)
T ss_pred EEEEEECCeEEEeeC------CEEEEecCCeEEEEEEEEEecC
Confidence 999999999999985 8999999999999999998753
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=9e-66 Score=525.87 Aligned_cols=379 Identities=31% Similarity=0.453 Sum_probs=330.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++.+||+++||+|||||||+++|++... ..|+......+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~ 72 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET 72 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhh---------------hccCCcccchhhccCChHHHhcCeEEeeeEEEEcC
Confidence 457889999999999999999999986431 12333333334799999999999999999999988
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
++..++|+|||||++|++++.+++..+|++++|||+..|.. +|+++|+.++..+++|.+||++||||+ .+
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-------~qt~~~~~~~~~~g~p~iiVvvNK~D~--~~- 142 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VD- 142 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hHHHHHHHHHHHcCCCEEEEEEeecCC--cc-
Confidence 99999999999999999999999999999999999998853 799999999999999966679999999 33
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCCh-hhHHHHHhc-cCCCCCCCCCCeEEE
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 298 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~p~~~~ 298 (496)
.++.++.+..++..+++.+++. ..++|++|+||++|.+-. ..++||.| ++|+++|+. ++.|.+..++||+|+
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~-~~~~~iv~iSa~~g~~~~-----~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK00049 143 DEELLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALEGD-----DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCCC-ccCCcEEEeecccccCCC-----CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 4556777888999999999885 246899999999998732 24789975 899999987 567777788999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEe
Q 010985 299 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 374 (496)
Q Consensus 299 i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 374 (496)
|+++| ++.|+|++|+|.+|+|++||+|.++|. +..++|+||+++++++++|.|||+|+++|++++..++++|++|+
T Consensus 217 I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~ 296 (396)
T PRK00049 217 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLA 296 (396)
T ss_pred EEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEe
Confidence 99999 588999999999999999999999987 68899999999999999999999999999999999999999999
Q ss_pred cCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010985 375 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 451 (496)
Q Consensus 375 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~ 451 (496)
+++ ++++++.|+|++.+|++.. +++|..||++++|+|+.+++|+|. + .++|++|++|+.+.|+
T Consensus 297 ~~~-~~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l------------~~~~~~l~~g~~a~v~ 362 (396)
T PRK00049 297 KPG-SITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-L------------PEGVEMVMPGDNVEMT 362 (396)
T ss_pred cCC-CCCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-e------------cCCCcccCCCCEEEEE
Confidence 987 4556799999999976321 368999999999999999999982 2 2357889999999999
Q ss_pred EEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 452 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 452 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
|+|++|+|++++ |||+||+.|+|+|+|+|+++.
T Consensus 363 i~~~~p~~~e~~------~RfilR~~g~t~~~G~V~~v~ 395 (396)
T PRK00049 363 VELIAPIAMEEG------LRFAIREGGRTVGAGVVTKII 395 (396)
T ss_pred EEECceEEEeeC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999985 799999999999999999875
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.3e-65 Score=521.00 Aligned_cols=377 Identities=30% Similarity=0.461 Sum_probs=328.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++++||+++||+|||||||+++|+...+ +.|+.++...+.+|..++|+++|+|++.....+++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~ 72 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLA---------------ERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET 72 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhh---------------hhccccccchhhhcCCHHHHhcCccEEEEeeEecC
Confidence 467889999999999999999999974321 23555555455899999999999999999999988
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
+++.++|+|||||++|++++++++..+|++|+|||+..|.. +|+++|+.++..+++|++|||+||||+ .+
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-------~~t~~~~~~~~~~g~~~~IvviNK~D~--~~- 142 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYLVVFLNKVDL--VD- 142 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCEEEEEEEecCC--cc-
Confidence 89999999999999999999999999999999999999853 799999999999999988899999998 32
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCCh-hhHHHHHhc-cCCCCCCCCCCeEEE
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 298 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~p~~~~ 298 (496)
+++.++.+.+++..+++..++.. ..++++|+||++|.+- ..+||.+ ++|++.|+. ++.|.++.++||+|+
T Consensus 143 ~~~~~~~i~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~~-------~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~ 214 (394)
T PRK12736 143 DEELLELVEMEVRELLSEYDFPG-DDIPVIRGSALKALEG-------DPKWEDAIMELMDAVDEYIPTPERDTDKPFLMP 214 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCc-CCccEEEeeccccccC-------CCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEE
Confidence 34566677789999999998863 3579999999998542 2479964 788888876 577777888999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEe
Q 010985 299 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 374 (496)
Q Consensus 299 i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 374 (496)
|+++| ++.|+|++|+|.+|+|++||.|+++|. +..++|++|+++++++++|.|||+|+++|++++..++++|+||+
T Consensus 215 I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~ 294 (394)
T PRK12736 215 VEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLA 294 (394)
T ss_pred EEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEe
Confidence 99999 588999999999999999999999997 67899999999999999999999999999999989999999999
Q ss_pred cCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010985 375 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 451 (496)
Q Consensus 375 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~ 451 (496)
+++. +++++.|+|++.+|+... +.++..||++++|+|+.++.|+|.. .++|++|++|+.+.|+
T Consensus 295 ~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 360 (394)
T PRK12736 295 KPGS-IKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL-------------PEGTEMVMPGDNVTIT 360 (394)
T ss_pred cCCC-CCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe-------------cCCcceeCCCCEEEEE
Confidence 9874 456799999999976321 2678999999999999999999742 2357889999999999
Q ss_pred EEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 452 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 452 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 361 l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 361 VELIHPIAMEQG------LKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred EEECceEEEeeC------CEEEEecCCcEEEEEEEEEee
Confidence 999999999986 799999999999999999874
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=3.3e-64 Score=515.32 Aligned_cols=377 Identities=30% Similarity=0.461 Sum_probs=328.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++.++|+++||+|||||||+++|++... ..|+.++...+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~ 72 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA---------------KEGGAAARAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHH---------------HhhcccccccccccCCHHHHhcCcceeeEEEEEcC
Confidence 457789999999999999999999975421 23555555567899999999999999999999988
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
+++.++|+|||||++|++++++++..+|++++|||+..|.. +|+++|+.++..+++|++|+|+||||+ .+
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~e~l~~~~~~gi~~iIvvvNK~Dl--~~- 142 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VD- 142 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEeccc--CC-
Confidence 89999999999999999999999999999999999999853 699999999999999977789999998 33
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCC-hhhHHHHHhcc-CCCCCCCCCCeEEE
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-GPCLFEALDRI-EITPRDPNGPFRMP 298 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~-g~~L~~~l~~l-~~~~~~~~~p~~~~ 298 (496)
.++.++.+.++++.+++..++.. .+++++|+||++|.+- ..+||. +++|++.|+.+ +.|.++.++||+++
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~g-------~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~ 214 (394)
T TIGR00485 143 DEELLELVEMEVRELLSEYDFPG-DDTPIIRGSALKALEG-------DAEWEAKILELMDAVDEYIPTPERETDKPFLMP 214 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc-cCccEEECcccccccc-------CCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 24566777788999999988752 3579999999998642 246997 48898888874 66777788999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEe
Q 010985 299 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 374 (496)
Q Consensus 299 i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 374 (496)
|+++| ++.|+|++|+|.+|+|++||.|.+.|. +..++|++|++++.++++|.|||+|+++|++++..++++|++|+
T Consensus 215 V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 215 IEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred EEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEe
Confidence 99999 588999999999999999999999984 57899999999999999999999999999999888999999999
Q ss_pred cCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010985 375 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 451 (496)
Q Consensus 375 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~ 451 (496)
+++ ++++++.|+|++.+|+... +.+|..||++++|+|+.++.|++..+ ++|++|++|+.+.|+
T Consensus 295 ~~~-~~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~l~~g~~a~v~ 360 (394)
T TIGR00485 295 KPG-SIKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLP-------------EGVEMVMPGDNVKMT 360 (394)
T ss_pred cCC-CCCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEec-------------CCcceeCCCCEEEEE
Confidence 986 4456799999999965321 36899999999999999999998631 357889999999999
Q ss_pred EEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 452 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 452 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 361 ~~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T TIGR00485 361 VELISPIALEQG------MRFAIREGGRTVGAGVVSKII 393 (394)
T ss_pred EEECceEEEeEC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999985 899999999999999999875
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=8e-64 Score=515.46 Aligned_cols=379 Identities=28% Similarity=0.426 Sum_probs=324.1
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEE
Q 010985 59 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 138 (496)
Q Consensus 59 ~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~ 138 (496)
....++++||+++||+|||||||+++|+... .+.|+........+|..++|+++|+|++.....|
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~ 119 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY 119 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhcccceeeccccCChhHhhcCceeeeeEEEE
Confidence 4457889999999999999999999995221 1223332222226999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 139 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
++++++++|+|||||++|++++++++..+|+++||||+.+|.. +|+++|+.++..+++|++|+++||||+ .
T Consensus 120 ~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-------~qt~e~l~~~~~~gip~iIvviNKiDl--v 190 (447)
T PLN03127 120 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVVFLNKVDV--V 190 (447)
T ss_pred cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEeecc--C
Confidence 9999999999999999999999999999999999999998854 799999999999999977889999999 3
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccc---cccccccccCCCCCCChhhHHHHHhc-cCCCCCCCCCC
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGP 294 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g---~gi~~l~~~~~~~w~~g~~L~~~l~~-l~~~~~~~~~p 294 (496)
+ .++.++.+.+++..+++.++++ ...+|++|+|++++ .|+. ..|..+++|++.|+. ++.|.+..++|
T Consensus 191 ~-~~~~~~~i~~~i~~~l~~~~~~-~~~vpiip~Sa~sa~~g~n~~-------~~~~~i~~Ll~~l~~~lp~p~r~~~~p 261 (447)
T PLN03127 191 D-DEELLELVEMELRELLSFYKFP-GDEIPIIRGSALSALQGTNDE-------IGKNAILKLMDAVDEYIPEPVRVLDKP 261 (447)
T ss_pred C-HHHHHHHHHHHHHHHHHHhCCC-CCcceEEEeccceeecCCCcc-------cccchHHHHHHHHHHhCCCCCcccccc
Confidence 3 3445666777888888888775 24689999998754 4432 346677889988876 57777788899
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecC----CceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcc
Q 010985 295 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN----KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 368 (496)
Q Consensus 295 ~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~----~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~ 368 (496)
|+|+|+++| ++.|+|++|+|.+|.|++||.|.++|. +..++|++|+++++++++|.|||+|+++|++++..+++
T Consensus 262 fr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~ 341 (447)
T PLN03127 262 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQ 341 (447)
T ss_pred eEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCC
Confidence 999999999 588999999999999999999999875 46899999999999999999999999999999999999
Q ss_pred eeeEEecCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCC
Q 010985 369 SGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNG 445 (496)
Q Consensus 369 ~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g 445 (496)
+|+||++++ ++..+++|+|++.+|+... +++|..||++++|+|+.+++|+|.. .++|++|++|
T Consensus 342 rG~Vl~~~~-~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~-------------~~~~~~l~~g 407 (447)
T PLN03127 342 RGQVICKPG-SIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVEL-------------PEGVKMVMPG 407 (447)
T ss_pred CccEEecCC-CCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEe-------------ccCccccCCC
Confidence 999999985 4678999999999976321 3678999999999999999999842 2357889999
Q ss_pred cEEEEEEEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 446 AIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 446 ~~~~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
+.+.|+|+|.+|+|++++ +||+||++|+|+|+|+|+++.
T Consensus 408 d~a~v~l~~~~p~~le~g------~RfilR~~g~Tvg~G~V~~v~ 446 (447)
T PLN03127 408 DNVTAVFELISPVPLEPG------QRFALREGGRTVGAGVVSKVL 446 (447)
T ss_pred CEEEEEEEECceEEEeeC------CEEEEEeCCcEEEEEEEEEec
Confidence 999999999999999975 899999999999999999874
No 19
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-59 Score=431.01 Aligned_cols=379 Identities=30% Similarity=0.463 Sum_probs=322.1
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEE
Q 010985 59 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 138 (496)
Q Consensus 59 ~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~ 138 (496)
-++.+++.||+.+||+|+|||||..++...+. ..|..++....-.|..++|+++|+|++.....+
T Consensus 6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la---------------~~~~~~~~~y~~id~aPeEk~rGITIntahvey 70 (394)
T COG0050 6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KKGGAEAKAYDQIDNAPEEKARGITINTAHVEY 70 (394)
T ss_pred hcCCCCeeEEEEeccccCchhhHHHHHHHHHH---------------hhccccccchhhhccCchHhhcCceeccceeEE
Confidence 45788999999999999999999999853221 111112222223577899999999999999999
Q ss_pred EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 139 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
++.++.+..+|+|||.||++||+.++.+.|++||||+|.+|.+ +||++|+.+++..|+|+++|++||+|+ +
T Consensus 71 et~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-------PqTrEHiLlarqvGvp~ivvflnK~Dm--v 141 (394)
T COG0050 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYIVVFLNKVDM--V 141 (394)
T ss_pred ecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-------CcchhhhhhhhhcCCcEEEEEEecccc--c
Confidence 9999999999999999999999999999999999999999987 799999999999999999999999999 5
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCCh-hhHHHHHhc-cCCCCCCCCCCeE
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFR 296 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~p~~ 296 (496)
+ +.+.++.+..+++++|..++|. ..+.|++.-||+..-.-. .+|... ..|+++++. +|.|.++.++||+
T Consensus 142 d-d~ellelVemEvreLLs~y~f~-gd~~Pii~gSal~ale~~-------~~~~~~i~eLm~avd~yip~Per~~dkPfl 212 (394)
T COG0050 142 D-DEELLELVEMEVRELLSEYGFP-GDDTPIIRGSALKALEGD-------AKWEAKIEELMDAVDSYIPTPERDIDKPFL 212 (394)
T ss_pred C-cHHHHHHHHHHHHHHHHHcCCC-CCCcceeechhhhhhcCC-------cchHHHHHHHHHHHHhcCCCCCCccccccc
Confidence 4 5788889999999999999997 457788887875432111 124332 236777765 6889999999999
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeE
Q 010985 297 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 372 (496)
Q Consensus 297 ~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~v 372 (496)
++|.++| .++|+|++|||++|+|++|+.+.+.... ++..|.+|+++++..+++.||++|++.|+|+.+.++.||++
T Consensus 213 mpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqv 292 (394)
T COG0050 213 MPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQV 292 (394)
T ss_pred ccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceE
Confidence 9999999 5899999999999999999999987654 56789999999999999999999999999999999999999
Q ss_pred EecCCCCcccccEEEEEEEEcccc---ccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEE
Q 010985 373 LSSVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 449 (496)
Q Consensus 373 l~~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~ 449 (496)
|+.|+ ...+..+|+|+++++..- .|+++-.||.|.+++++..++..+.- .+...++.+|+.+.
T Consensus 293 Lakpg-si~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~l-------------~eg~emvmpgdnv~ 358 (394)
T COG0050 293 LAKPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITL-------------PEGVEMVMPGDNVK 358 (394)
T ss_pred eecCC-cccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEec-------------cCCcceecCCCceE
Confidence 99988 467789999999997532 24889999999999999888774331 12246799999999
Q ss_pred EEEEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 450 CRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 450 v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
+.++|..||++|.. .||.+|..|+|+|.|+|.++.
T Consensus 359 ~~veLi~pia~e~G------~rFaIreGgrtvgaGvV~~i~ 393 (394)
T COG0050 359 MVVELIHPIAMEEG------LRFAIREGGRTVGAGVVTKII 393 (394)
T ss_pred EEEEEeeeeecCCC------CEEEEEeCCeeeeeeEEeeec
Confidence 99999999999987 599999999999999999875
No 20
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-60 Score=443.55 Aligned_cols=382 Identities=31% Similarity=0.451 Sum_probs=327.7
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEE
Q 010985 58 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 137 (496)
Q Consensus 58 ~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~ 137 (496)
...+.+++.||+.+||+|+|||||..++..-. .+.|...+.-..-.|.-++|+.||+|++.....
T Consensus 47 ~f~R~KPHvNVGTIGHVDHGKTTLTaAITkil---------------a~~g~A~~~kydeID~APEEkaRGITIn~aHve 111 (449)
T KOG0460|consen 47 VFVRDKPHVNVGTIGHVDHGKTTLTAAITKIL---------------AEKGGAKFKKYDEIDKAPEEKARGITINAAHVE 111 (449)
T ss_pred ccccCCCcccccccccccCCchhHHHHHHHHH---------------HhccccccccHhhhhcChhhhhccceEeeeeee
Confidence 45578899999999999999999999885221 122333333333468889999999999999999
Q ss_pred EEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 010985 138 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 138 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~ 217 (496)
+++..+.+.-+|+|||.||+++|+.|+++.|++||||.|++|.+ +||+||+.+++..|+++++|++||.|+
T Consensus 112 YeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-------PQTrEHlLLArQVGV~~ivvfiNKvD~-- 182 (449)
T KOG0460|consen 112 YETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-------PQTREHLLLARQVGVKHIVVFINKVDL-- 182 (449)
T ss_pred eeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-------cchHHHHHHHHHcCCceEEEEEecccc--
Confidence 99999999999999999999999999999999999999999987 799999999999999999999999998
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCC--hhhHHHHHhc-cCCCCCCCCCC
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN--GPCLFEALDR-IEITPRDPNGP 294 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~--g~~L~~~l~~-l~~~~~~~~~p 294 (496)
++ +++.++-+.-+++++|..+||+ ..+.|+|.-||+..--=.+. .... -.-|+++++. +|.|.++.++|
T Consensus 183 V~-d~e~leLVEmE~RElLse~gf~-Gd~~PvI~GSAL~ALeg~~p------eig~~aI~kLldavDsyip~P~R~~~~p 254 (449)
T KOG0460|consen 183 VD-DPEMLELVEMEIRELLSEFGFD-GDNTPVIRGSALCALEGRQP------EIGLEAIEKLLDAVDSYIPTPERDLDKP 254 (449)
T ss_pred cC-CHHHHHHHHHHHHHHHHHcCCC-CCCCCeeecchhhhhcCCCc------cccHHHHHHHHHHHhccCCCcccccCCC
Confidence 43 5677878888999999999998 66889998887543211110 0110 0126777776 89999999999
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEEcCccccccCCCCeEEEEeccCCccCccee
Q 010985 295 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 370 (496)
Q Consensus 295 ~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G 370 (496)
|.++|.++| .|+|+|++|++++|.|+.|+++.+...+ .+.+|..|+++++.+++|.|||++++.|+|+...+++||
T Consensus 255 Fl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRG 334 (449)
T KOG0460|consen 255 FLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRG 334 (449)
T ss_pred ceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcc
Confidence 999999999 6999999999999999999999998766 567899999999999999999999999999999999999
Q ss_pred eEEecCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcE
Q 010985 371 FVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAI 447 (496)
Q Consensus 371 ~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~ 447 (496)
||++.|+. ..+..+|+|++++|+.-. ++++..+|.+.+++.+..++|++.-.. +.+++.||+.
T Consensus 335 mvl~~pGs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~-------------~~~mvMPGe~ 400 (449)
T KOG0460|consen 335 MVLAKPGS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPP-------------EKEMVMPGEN 400 (449)
T ss_pred cEEecCCc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccC-------------hHhcccCCCC
Confidence 99999995 678999999999976322 388999999999999999999877431 1357999999
Q ss_pred EEEEEEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcCC
Q 010985 448 VVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 491 (496)
Q Consensus 448 ~~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~ 491 (496)
+.+.+.|-+|+++|+. .||.||+.|+|||.|+|+++.+
T Consensus 401 ~~~~~~Li~pm~le~G------qrFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 401 VKVEVTLIRPMPLEKG------QRFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred eEEEEEEecccccCCC------ceeeEccCCeeeeeeeEeeeee
Confidence 9999999999999997 6999999999999999998875
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.3e-55 Score=453.14 Aligned_cols=346 Identities=22% Similarity=0.371 Sum_probs=289.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..+..++|+++||+|||||||+++|.. .-+|..++|.++|+|++.++..+.+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg----------------------------~~~~r~~~E~~rGiTi~lGfa~~~~ 81 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSG----------------------------VKTVRFKREKVRNITIKLGYANAKI 81 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhC----------------------------CCcccchhhHHhCCchhcccccccc
Confidence 346789999999999999999999951 1235567888999999988775421
Q ss_pred ---------------C------------------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCC
Q 010985 141 ---------------E------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEK 187 (496)
Q Consensus 141 ---------------~------------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~ 187 (496)
. .+.++|+|||||++|+++|++++..+|+++|||||.++. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~------~ 155 (460)
T PTZ00327 82 YKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC------P 155 (460)
T ss_pred ccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc------c
Confidence 1 247999999999999999999999999999999999862 1
Q ss_pred CCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccC
Q 010985 188 GGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS 267 (496)
Q Consensus 188 ~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~ 267 (496)
.+||++|+.++..++++++|||+||||+.. .+.+++..+++..+++.... ...++||+||++|.|++.
T Consensus 156 ~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~----~~~~~~~~~ei~~~l~~~~~---~~~~iipVSA~~G~nI~~----- 223 (460)
T PTZ00327 156 QPQTSEHLAAVEIMKLKHIIILQNKIDLVK----EAQAQDQYEEIRNFVKGTIA---DNAPIIPISAQLKYNIDV----- 223 (460)
T ss_pred chhhHHHHHHHHHcCCCcEEEEEecccccC----HHHHHHHHHHHHHHHHhhcc---CCCeEEEeeCCCCCCHHH-----
Confidence 279999999999999998999999999942 34555666667777665432 257899999999999976
Q ss_pred CCCCCChhhHHHHHh-ccCCCCCCCCCCeEEEEEEEE--cc--------CCeEEEEEEEEeeeecCCEEEEecCC-----
Q 010985 268 LCPWWNGPCLFEALD-RIEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNK----- 331 (496)
Q Consensus 268 ~~~w~~g~~L~~~l~-~l~~~~~~~~~p~~~~i~~~~--~~--------~G~v~~g~v~~G~l~~g~~v~~~p~~----- 331 (496)
|+++|+ .++.|.++.+.|++++|+++| ++ .|+|++|+|.+|+|++||+|.++|++
T Consensus 224 ---------Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~ 294 (460)
T PTZ00327 224 ---------VLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDS 294 (460)
T ss_pred ---------HHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccc
Confidence 677777 678887888899999999887 22 69999999999999999999999975
Q ss_pred --------ceEEEEEEEEcCccccccCCCCeEEEEec---cCCccCcceeeEEecCCCCcccccEEEEEEEEcccc----
Q 010985 332 --------AQVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL---- 396 (496)
Q Consensus 332 --------~~~~V~sI~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~---- 396 (496)
..++|+||++++.++++|.|||+|+++|+ +++..++.+|+||++++.+++.++.|+|++.|++..
T Consensus 295 ~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~ 374 (460)
T PTZ00327 295 GGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVK 374 (460)
T ss_pred cCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEeccccccc
Confidence 36799999999999999999999999988 788889999999999987777788999999997542
Q ss_pred -------c-cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEeeeccCcCc
Q 010985 397 -------D-NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQ 468 (496)
Q Consensus 397 -------~-~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~ 468 (496)
. ..+|+.||++.+|+++.++.|+|..|. . +. .++|+|++|+|+.+.
T Consensus 375 ~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~----~----------------~~-~~~l~l~~P~~~~~g----- 428 (460)
T PTZ00327 375 SQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIK----D----------------DG-IAKLELTTPVCTSVG----- 428 (460)
T ss_pred ccccccccCCcccCCCCEEEEEecccEEEEEEEEeC----C----------------Ce-EEEEEECccEeccCC-----
Confidence 0 158999999999999999999998762 1 00 677999999999876
Q ss_pred cceEEEEeC----CcEEEEEEEEE
Q 010985 469 LGRFTLRTE----GKTVAVGKVTE 488 (496)
Q Consensus 469 lgrfilr~~----g~tva~G~V~~ 488 (496)
.||+||+. .+|+|+|.|..
T Consensus 429 -dr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 429 -EKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred -CEEEEEeccCCCcEEEEEEEEcC
Confidence 69999974 38999999874
No 22
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1.3e-53 Score=454.55 Aligned_cols=339 Identities=25% Similarity=0.375 Sum_probs=292.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe-CCeE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTR 144 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~ 144 (496)
+.|+++||+|+|||||+++|.. .-+|..++|+++|+|++..+..+.+ ++..
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg----------------------------~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~ 52 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITG----------------------------VNADRLPEEKKRGMTIDLGYAYWPQPDGRV 52 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhC----------------------------CCCccchhcccCCceEEeeeEEEecCCCcE
Confidence 3589999999999999999941 1146667889999999999888866 4678
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHH
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 224 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~ 224 (496)
++|+|||||++|+++|+.++..+|++++|||++.|.+ +||++|+.++..++++++|||+||+|+ + ++++
T Consensus 53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-------~qT~ehl~il~~lgi~~iIVVlNKiDl--v--~~~~ 121 (614)
T PRK10512 53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-------AQTREHLAILQLTGNPMLTVALTKADR--V--DEAR 121 (614)
T ss_pred EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCcc--C--CHHH
Confidence 9999999999999999999999999999999999864 699999999999999988899999998 3 3567
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEEE-
Q 010985 225 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF- 303 (496)
Q Consensus 225 ~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~~- 303 (496)
++.+.+++..+++..++. ..+++|+||++|+|+++ |.+.|..++.+....++||||+|+++|
T Consensus 122 ~~~v~~ei~~~l~~~~~~---~~~ii~VSA~tG~gI~~--------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~ 184 (614)
T PRK10512 122 IAEVRRQVKAVLREYGFA---EAKLFVTAATEGRGIDA--------------LREHLLQLPEREHAAQHRFRLAIDRAFT 184 (614)
T ss_pred HHHHHHHHHHHHHhcCCC---CCcEEEEeCCCCCCCHH--------------HHHHHHHhhccccCcCCCceEEEEEEec
Confidence 778888888888887764 46899999999999987 666777776666667899999999999
Q ss_pred -ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEecc-CCccCcceeeEEecCCCCcc
Q 010985 304 -KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSG-IEEEDILSGFVLSSVAKPVA 381 (496)
Q Consensus 304 -~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~-~~~~~i~~G~vl~~~~~~~~ 381 (496)
++.|+|++|+|.+|+|++||+|.++|.+..++|++|++++.++++|.||++|+++|+| ++..++++|++|++++ ++.
T Consensus 185 v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~-~~~ 263 (614)
T PRK10512 185 VKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA-PPE 263 (614)
T ss_pred cCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC-CCc
Confidence 6899999999999999999999999999999999999999999999999999999997 8889999999999875 445
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEee
Q 010985 382 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 461 (496)
Q Consensus 382 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 461 (496)
++..+.+.+.. ..+++.|+++.+|+|+.++.|+|..+ +.+.+++.+++|+++.
T Consensus 264 ~~~~~~~~l~~-----~~~l~~~~~~~~~~gt~~~~~~i~~l----------------------~~~~~~l~l~~p~~~~ 316 (614)
T PRK10512 264 PFTRVIVELQT-----HTPLTQWQPLHIHHAASHVTGRVSLL----------------------EDNLAELVLDTPLWLA 316 (614)
T ss_pred cceeEEEEEcC-----CccCCCCCEEEEEEcccEEEEEEEEc----------------------CCeEEEEEECCccccc
Confidence 55555433221 25788999999999999999998865 1267999999999988
Q ss_pred eccCcCccceEEEEeC--CcEEEEEEEEEcCCCCC
Q 010985 462 KFADFAQLGRFTLRTE--GKTVAVGKVTELPTVSS 494 (496)
Q Consensus 462 ~~~~~~~lgrfilr~~--g~tva~G~V~~v~~~~~ 494 (496)
.. .||+||+. .+|+|+|.|+++.++..
T Consensus 317 ~g------dr~ilr~~s~~~tigGg~Vld~~~~~~ 345 (614)
T PRK10512 317 DN------DRLVLRDISARNTLAGARVVMLNPPRR 345 (614)
T ss_pred CC------CEEEEEeCCCCEEEEEEEEcccCCccc
Confidence 75 69999994 69999999999876643
No 23
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=3.1e-53 Score=403.95 Aligned_cols=379 Identities=27% Similarity=0.422 Sum_probs=303.3
Q ss_pred ccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhH------HHHHHHHHhhcCccchhhhhhcCCchhhhhc-cc
Q 010985 57 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRT------IQKYEKEAKDKSRESWYMAYIMDTNEEERIK-GK 129 (496)
Q Consensus 57 ~~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~------~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~-G~ 129 (496)
+..+...++++|+.+||+|||||||++.| .+|..|+.. +..+ ++..+.|+++...-.+..+.....-+ --
T Consensus 109 r~~~~~~~hv~Vg~aGhVdhGKSTlvG~L--vtG~~DDG~G~tR~~ldv~-kHEverGlsa~iS~~v~Gf~dgk~~rlkn 185 (527)
T COG5258 109 RKTEEAPEHVLVGVAGHVDHGKSTLVGVL--VTGRLDDGDGATRSYLDVQ-KHEVERGLSADISLRVYGFDDGKVVRLKN 185 (527)
T ss_pred ecccCCCceEEEEEeccccCCcceEEEEE--EecCCCCCCcchhhhhhhh-hHHHhhccccceeEEEEEecCCceEeecC
Confidence 34445678999999999999999999999 578777652 1222 22233444433222222221100000 00
Q ss_pred EEeeeeE--EEEeCCeEEEEEeCCCCcccHhHHhhcc--ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCce
Q 010985 130 TVEVGRA--HFETETTRFTILDAPGHKSYVPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 205 (496)
Q Consensus 130 T~~~~~~--~~~~~~~~i~liDtpG~~~~~~~~~~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~ 205 (496)
..|-... -++..++.+.|+||-||+.|++++++++ +..|+.+|+|.|++|++ .+|+||+.++.+++.|
T Consensus 186 Pld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~-------~~tkEHLgi~~a~~lP- 257 (527)
T COG5258 186 PLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT-------KMTKEHLGIALAMELP- 257 (527)
T ss_pred cccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc-------hhhhHhhhhhhhhcCC-
Confidence 0000000 0233467899999999999999999998 58999999999999975 6999999999999999
Q ss_pred EEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCc-------------------cCCeeEEeecccccccccccccc
Q 010985 206 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-------------------KKDVQFLPISGLMGLNMKTRVDK 266 (496)
Q Consensus 206 ~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~-------------------~~~~~~ipiSa~~g~gi~~l~~~ 266 (496)
+||++||+|+ .+.++++.+.+++..+|+..+--| ..-+|++.+|+.+|+|++-
T Consensus 258 viVvvTK~D~----~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl---- 329 (527)
T COG5258 258 VIVVVTKIDM----VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL---- 329 (527)
T ss_pred EEEEEEeccc----CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH----
Confidence 8999999999 457899999999999998764321 1136899999999999985
Q ss_pred CCCCCCChhhHHHHHhccCCCCC-CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC----ceEEEEEE
Q 010985 267 SLCPWWNGPCLFEALDRIEITPR-DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAI 339 (496)
Q Consensus 267 ~~~~w~~g~~L~~~l~~l~~~~~-~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~----~~~~V~sI 339 (496)
|.+++..+|...+ +...||.|+|++.| .|+|+|+.|.|.+|.|+.||+++++|-. ..++|+||
T Consensus 330 ----------L~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSI 399 (527)
T COG5258 330 ----------LDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSI 399 (527)
T ss_pred ----------HHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEE
Confidence 5667777776533 56789999999999 6999999999999999999999999965 68899999
Q ss_pred EEcCccccccCCCCeEEEEeccCCccCcceeeEEecCCCCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEE
Q 010985 340 YCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEEC 418 (496)
Q Consensus 340 ~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~ 418 (496)
++|+-++++|.||.+++++++|+.+..+++||||+.. .+|.++++|+|++++ ++| +.|+.||.+++|+.++++++
T Consensus 400 emh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~pkaVref~AeV~v---l~HPT~I~aGye~v~H~etI~e~~ 475 (527)
T COG5258 400 EMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG-ADPKAVREFDAEVLV---LRHPTTIRAGYEPVFHYETIREAV 475 (527)
T ss_pred EEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC-CCchhhheecceEEE---EeCCcEEecCceeeeEeeEeehee
Confidence 9999999999999999999999999999999999987 678999999999999 667 88999999999999999999
Q ss_pred EEEEEEEEeecCCCccccccceeecCCcEEEEEEEEC-ceEEeeeccCcCccceEEEEeCCcEEEEEEEEEc
Q 010985 419 EIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 489 (496)
Q Consensus 419 ~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~-~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v 489 (496)
++..|. + .+|++|+.+.++++|. +|-.++.. .+|++| +|++.|+|.|+.+
T Consensus 476 ~f~~id----~----------~~L~~GD~g~vr~~fkyrP~~v~eG------Q~fvFR-eGrskgvG~v~~~ 526 (527)
T COG5258 476 YFEEID----K----------GFLMPGDRGVVRMRFKYRPHHVEEG------QKFVFR-EGRSKGVGRVIRV 526 (527)
T ss_pred EEEEcc----c----------ccccCCCcceEEEEEEeCchhhccC------cEEEEe-cCCCccceEEecc
Confidence 988763 2 3599999999999997 99988873 366665 8999999999976
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=1.8e-51 Score=421.68 Aligned_cols=343 Identities=25% Similarity=0.411 Sum_probs=282.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
+.++.+||+++||+|||||||+++|.. ..+|..++|+++|+|++.....+.+
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~----------------------------~~~d~~~~E~~rg~Ti~~~~~~~~~ 56 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTG----------------------------VWTDRHSEELKRGITIRLGYADATI 56 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhC----------------------------eecccCHhHHhcCcEEEeccccccc
Confidence 567789999999999999999999831 1267778999999999987654333
Q ss_pred C--------------------------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHH
Q 010985 141 E--------------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 194 (496)
Q Consensus 141 ~--------------------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~ 194 (496)
. .+.++|+|||||.+|+.+++.++..+|++++|+|+..+.. ..++.++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~------~~~t~~~ 130 (411)
T PRK04000 57 RKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCP------QPQTKEH 130 (411)
T ss_pred ccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCC------ChhHHHH
Confidence 1 2689999999999999999999999999999999998741 2588999
Q ss_pred HHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCCh
Q 010985 195 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 274 (496)
Q Consensus 195 ~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g 274 (496)
+..+..++++++++|+||+|+... +...+..+++..+++.... ...+++|+||++|.|+++
T Consensus 131 l~~l~~~~i~~iiVVlNK~Dl~~~----~~~~~~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gI~~------------ 191 (411)
T PRK04000 131 LMALDIIGIKNIVIVQNKIDLVSK----ERALENYEQIKEFVKGTVA---ENAPIIPVSALHKVNIDA------------ 191 (411)
T ss_pred HHHHHHcCCCcEEEEEEeeccccc----hhHHHHHHHHHHHhccccC---CCCeEEEEECCCCcCHHH------------
Confidence 999988898778999999999432 2222333445555543211 246899999999999987
Q ss_pred hhHHHHHhc-cCCCCCCCCCCeEEEEEEEEc--c--------CCeEEEEEEEEeeeecCCEEEEecCCc-----------
Q 010985 275 PCLFEALDR-IEITPRDPNGPFRMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNKA----------- 332 (496)
Q Consensus 275 ~~L~~~l~~-l~~~~~~~~~p~~~~i~~~~~--~--------~G~v~~g~v~~G~l~~g~~v~~~p~~~----------- 332 (496)
|++.|.. ++.|.+..++|++++|+++|. + .|+|++|+|.+|+|++||.|.++|++.
T Consensus 192 --L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~ 269 (411)
T PRK04000 192 --LIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEP 269 (411)
T ss_pred --HHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceeccccccccc
Confidence 5555554 677777778999999999982 2 577999999999999999999999863
Q ss_pred -eEEEEEEEEcCccccccCCCCeEEEEec---cCCccCcceeeEEecCCCCcccccEEEEEEEEcccc-------ccccc
Q 010985 333 -QVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIF 401 (496)
Q Consensus 333 -~~~V~sI~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i 401 (496)
.++|++|++++.++++|.||++|+++|+ +++..++++|+||++++.+++.+..|+|++.+++.. ...+|
T Consensus 270 ~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i 349 (411)
T PRK04000 270 ITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPI 349 (411)
T ss_pred ceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCC
Confidence 5799999999999999999999999996 677788999999999988888889999999996531 03589
Q ss_pred cCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEeeeccCcCccceEEE--EeCC-
Q 010985 402 TAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTL--RTEG- 478 (496)
Q Consensus 402 ~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lgrfil--r~~g- 478 (496)
..||++++|+++.+++|+|..|. ++ .++++|.+|+|+.+. .||+| |.++
T Consensus 350 ~~g~~~~l~~~t~~~~~~i~~i~--------------------~~--~~~~~l~~p~~~~~g------~r~~~~~~~~~~ 401 (411)
T PRK04000 350 KTGEPLMLNVGTATTVGVVTSAR--------------------KD--EAEVKLKRPVCAEEG------DRVAISRRVGGR 401 (411)
T ss_pred CCCCEEEEEEeccEEEEEEEEcC--------------------Cc--EEEEEECCcEecCCC------CEEEEEEecCCc
Confidence 99999999999999999999762 12 567779999999876 69999 5567
Q ss_pred -cEEEEEEE
Q 010985 479 -KTVAVGKV 486 (496)
Q Consensus 479 -~tva~G~V 486 (496)
+++|.|.|
T Consensus 402 ~~~~~~~~~ 410 (411)
T PRK04000 402 WRLIGYGII 410 (411)
T ss_pred EEEEEEEEe
Confidence 89999987
No 25
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=2e-51 Score=421.81 Aligned_cols=341 Identities=25% Similarity=0.401 Sum_probs=280.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE---
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--- 139 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~--- 139 (496)
++.++|+++||+|||||||+++|.. ..+|..++|+++|+|++.....+.
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~----------------------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 53 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTG----------------------------VWTDTHSEELKRGISIRLGYADAEIYK 53 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhC----------------------------eecccCHhHHHcCceeEeccccccccc
Confidence 4679999999999999999999931 125667889999999998865443
Q ss_pred -----------e------------CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHH
Q 010985 140 -----------T------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 196 (496)
Q Consensus 140 -----------~------------~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~ 196 (496)
+ .++.++|+|||||++|.++++.+++.+|++|||||++++.. ..|+++|+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~------~~qt~e~l~ 127 (406)
T TIGR03680 54 CPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP------QPQTKEHLM 127 (406)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCcc------ccchHHHHH
Confidence 1 14689999999999999999999999999999999998741 269999999
Q ss_pred HHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhh
Q 010985 197 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 276 (496)
Q Consensus 197 ~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~ 276 (496)
.+..++++++|||+||+|+... +...+..+++..+++.... ..++++|+||++|+|+++
T Consensus 128 ~l~~~gi~~iIVvvNK~Dl~~~----~~~~~~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gi~~-------------- 186 (406)
T TIGR03680 128 ALEIIGIKNIVIVQNKIDLVSK----EKALENYEEIKEFVKGTVA---ENAPIIPVSALHNANIDA-------------- 186 (406)
T ss_pred HHHHcCCCeEEEEEEccccCCH----HHHHHHHHHHHhhhhhccc---CCCeEEEEECCCCCChHH--------------
Confidence 9999998889999999999432 2223333445555544321 256899999999999986
Q ss_pred HHHHHhc-cCCCCCCCCCCeEEEEEEEEc--c--------CCeEEEEEEEEeeeecCCEEEEecCC------------ce
Q 010985 277 LFEALDR-IEITPRDPNGPFRMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNK------------AQ 333 (496)
Q Consensus 277 L~~~l~~-l~~~~~~~~~p~~~~i~~~~~--~--------~G~v~~g~v~~G~l~~g~~v~~~p~~------------~~ 333 (496)
|.+.|.. ++.|.++.++|++|+|+++|. + +|+|++|+|.+|+|++||.|.++|++ ..
T Consensus 187 L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~ 266 (406)
T TIGR03680 187 LLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIY 266 (406)
T ss_pred HHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccc
Confidence 5666665 677777788999999999982 2 57899999999999999999999985 25
Q ss_pred EEEEEEEEcCccccccCCCCeEEEEec---cCCccCcceeeEEecCCCCcccccEEEEEEEEcccc-------ccccccC
Q 010985 334 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTA 403 (496)
Q Consensus 334 ~~V~sI~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~ 403 (496)
++|+||++++.++++|.||++|+++|+ +++..++++|+||++++.+++.+..|+|++.|+... ...+|+.
T Consensus 267 ~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~ 346 (406)
T TIGR03680 267 TEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKT 346 (406)
T ss_pred eEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCC
Confidence 799999999999999999999999984 788889999999999987777889999999996532 1368999
Q ss_pred CcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEeeeccCcCccceEEE--EeCC--c
Q 010985 404 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTL--RTEG--K 479 (496)
Q Consensus 404 G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lgrfil--r~~g--~ 479 (496)
||++++|+++.+++|+|..+. + ..++++|.+|+|+... .||+| |.++ +
T Consensus 347 g~~~~l~~gt~~~~~~v~~~~--------------------~--~~~~l~l~~p~~~~~g------~r~~~~~~~~~~~~ 398 (406)
T TIGR03680 347 GEVLMLNVGTATTVGVVTSAR--------------------K--DEIEVKLKRPVCAEEG------DRVAISRRVGGRWR 398 (406)
T ss_pred CCEEEEEEccceEEEEEEEcC--------------------C--cEEEEEECCcEEcCCC------CEEEEEEecCCceE
Confidence 999999999999999999752 1 1377889999999886 69999 3345 8
Q ss_pred EEEEEEE
Q 010985 480 TVAVGKV 486 (496)
Q Consensus 480 tva~G~V 486 (496)
++|.|.|
T Consensus 399 ~~g~g~~ 405 (406)
T TIGR03680 399 LIGYGII 405 (406)
T ss_pred EEEEEEe
Confidence 9999987
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=3e-50 Score=427.92 Aligned_cols=335 Identities=26% Similarity=0.392 Sum_probs=283.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++||+|||||||+++|... -+|..++|+.+|+|++..+..++++++.+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~----------------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI----------------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc----------------------------cCcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 47999999999999999999521 13455778889999999999999999999
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHH
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 225 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~ 225 (496)
+|+|||||++|+++|+.++..+|++|+|||+++|.+ +|+.+|+.++..+++|++|||+||||+ . +++.+
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~-------~qT~ehl~il~~lgi~~iIVVlNK~Dl--v--~~~~~ 121 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM-------TQTGEHLAVLDLLGIPHTIVVITKADR--V--NEEEI 121 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCCC--C--CHHHH
Confidence 999999999999999999999999999999999864 699999999999999989999999999 3 35567
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEEE--
Q 010985 226 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF-- 303 (496)
Q Consensus 226 ~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~~-- 303 (496)
+.+.+++..+++..++. .+.+++|+||++|.|++++... |.+.++.++.+ ..+.||+++|+++|
T Consensus 122 ~~~~~ei~~~l~~~~~~--~~~~ii~vSA~tG~GI~eL~~~----------L~~l~~~~~~~--~~~~p~r~~Id~~f~v 187 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFL--KNAKIFKTSAKTGQGIGELKKE----------LKNLLESLDIK--RIQKPLRMAIDRAFKV 187 (581)
T ss_pred HHHHHHHHHHHHHhCCC--CCCcEEEEeCCCCCCchhHHHH----------HHHHHHhCCCc--CcCCCcEEEEEEEEec
Confidence 77778888888887653 2478999999999999986542 44555555443 25789999999999
Q ss_pred ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCCCCcccc
Q 010985 304 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 383 (496)
Q Consensus 304 ~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~~~ 383 (496)
+|.|+|++|+|.+|+|++||+|.++|.+..++|++|+.+++++++|.||++|+++|+|++..++++|++++++..+ .
T Consensus 188 ~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~---~ 264 (581)
T TIGR00475 188 KGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP---K 264 (581)
T ss_pred CCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC---C
Confidence 6899999999999999999999999999999999999999999999999999999999999999999888765432 2
Q ss_pred cEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEeeec
Q 010985 384 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKF 463 (496)
Q Consensus 384 ~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~ 463 (496)
..+...+.. ..++..|+.+.+|+++.++.|++..+. . ..+++.+++|+++...
T Consensus 265 ~~~~~~~~~-----~~~l~~~~~~~~~~gt~~~~~~i~~l~----~------------------~~~~l~l~~P~~~~~g 317 (581)
T TIGR00475 265 LRVVVKFIA-----EVPLLELQPYHIAHGMSVTTGKISLLD----K------------------GIALLTLDAPLILAKG 317 (581)
T ss_pred ceEEEEEEc-----CCccCCCCeEEEEEeceEEEEEEEEcc----C------------------cEEEEEECCceecCCC
Confidence 233333322 246888999999999999999977542 1 1677889999998876
Q ss_pred cCcCccceEEEEeC-CcEEEEEEEEEc
Q 010985 464 ADFAQLGRFTLRTE-GKTVAVGKVTEL 489 (496)
Q Consensus 464 ~~~~~lgrfilr~~-g~tva~G~V~~v 489 (496)
.||++|++ .+|+|+|.|++.
T Consensus 318 ------d~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 318 ------DKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred ------CEEEEEeCCCEEEeeeEEecC
Confidence 59999995 599999999987
No 27
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=9.7e-52 Score=392.23 Aligned_cols=380 Identities=25% Similarity=0.364 Sum_probs=314.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchh------HHHHHHHHHhhcCccchhhhhhcCCchhhh------hccc
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEER------IKGK 129 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~------~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~------~~G~ 129 (496)
.--..+|+++|++|+|||||++.| ..|.+++. .++++ ++..++||+|+..+-++.++.... ..|.
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVL--THgeLDnGRG~ARqkLFRH-KHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~ 206 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVL--THGELDNGRGAARQKLFRH-KHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGH 206 (641)
T ss_pred cceeEEEEEEecccCCcceeEeee--eecccccCccHHHHHHhhh-hhhcccCccccccccceeeccccccccCCCCCCC
Confidence 334689999999999999999998 56667653 34554 445689999999999988876543 2233
Q ss_pred EEeeeeEEEEeCCeEEEEEeCCCCcccHhHHhhccc--cCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 010985 130 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 207 (496)
Q Consensus 130 T~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~--~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~i 207 (496)
..|... ..+...+.++|||.+||++|+++++.++. .+|+.+|+|-|+.|.. ++|+||+.++.++.+| ++
T Consensus 207 ~LdWvk-Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-------GmTKEHLgLALaL~VP-Vf 277 (641)
T KOG0463|consen 207 NLDWVK-ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-------GMTKEHLGLALALHVP-VF 277 (641)
T ss_pred ccccee-eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-------eccHHhhhhhhhhcCc-EE
Confidence 333211 12334578999999999999999999986 7899999999999965 8999999999999999 88
Q ss_pred EEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCc--------------------cCCeeEEeeccccccccccccccC
Q 010985 208 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV--------------------KKDVQFLPISGLMGLNMKTRVDKS 267 (496)
Q Consensus 208 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~--------------------~~~~~~ipiSa~~g~gi~~l~~~~ 267 (496)
||++|+|+++++ .+++....+..+++..|+.. ..-+|+|.+|..+|+|+.-
T Consensus 278 vVVTKIDMCPAN----iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L----- 348 (641)
T KOG0463|consen 278 VVVTKIDMCPAN----ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL----- 348 (641)
T ss_pred EEEEeeccCcHH----HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-----
Confidence 999999997654 55666677777888776641 2346888999999999874
Q ss_pred CCCCCChhhHHHHHhccCCC-CCCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC----ceEEEEEEE
Q 010985 268 LCPWWNGPCLFEALDRIEIT-PRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIY 340 (496)
Q Consensus 268 ~~~w~~g~~L~~~l~~l~~~-~~~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~----~~~~V~sI~ 340 (496)
|..+|+.++.. ..+.+.|..|.|+++| +++|+|++|+..+|+|+.+|.+.++|.. .+..|+||+
T Consensus 349 ---------LkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH 419 (641)
T KOG0463|consen 349 ---------LKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH 419 (641)
T ss_pred ---------HHHHHhhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh
Confidence 44566665432 3456789999999998 7999999999999999999999999975 578999999
Q ss_pred EcCccccccCCCCeEEEEeccCCccCcceeeEEecCCCCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEE
Q 010985 341 CDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECE 419 (496)
Q Consensus 341 ~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~ 419 (496)
+.+-+|..+.+||.+.++|+.++..++++|||+++++..|.++|.|+|+|.+ ++| ++|.+.|+.++||++++|+|+
T Consensus 420 RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILV---LHHPTTIsprYQAMvHcGSiRQTAt 496 (641)
T KOG0463|consen 420 RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILV---LHHPTTISPRYQAMVHCGSIRQTAT 496 (641)
T ss_pred hccccceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEE---EecCCccCcchhheeeeccccceee
Confidence 9999999999999999999999999999999999999999999999999999 777 889999999999999999999
Q ss_pred EEEEEEEeecCCCccccccceeecCCcEEEEEEEE-CceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcCCCCCC
Q 010985 420 IVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV-NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSSS 495 (496)
Q Consensus 420 i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~-~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~~~~~ 495 (496)
|.++. -.+|+.|+.+.|+|+| .+|-++.+ |.-+++++|+|.|+|.|+++.+..++
T Consensus 497 ivsM~--------------kdcLRTGDka~V~FrFIkqPEYir~-------gqrlVFREGRTKAVGti~~~lp~~~~ 552 (641)
T KOG0463|consen 497 IVSMG--------------KDCLRTGDKAKVQFRFIKQPEYIRP-------GQRLVFREGRTKAVGTISSVLPQESL 552 (641)
T ss_pred eeecC--------------hhhhhcCCcceEEEEEecCcceecC-------CceEEeecccceeeeeeccccccccc
Confidence 98763 2469999999999997 46666655 45556668999999999999877654
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-48 Score=379.93 Aligned_cols=336 Identities=27% Similarity=0.406 Sum_probs=278.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
.|+.+||+++|||||+.+|. ....|..++|.++|+|+|..++++..+++.+.
T Consensus 2 ii~t~GhidHgkT~L~~alt----------------------------g~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT----------------------------GGVTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhhc----------------------------ccccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 68999999999999999883 23467779999999999999999999999999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 226 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~ 226 (496)
|+|+|||++|+++|+.++...|+++||||+++|.+ .||.||+.++..+|+++.|+|+||+|+ + +.++.+
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~-------~qtgEhL~iLdllgi~~giivltk~D~--~--d~~r~e 122 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLM-------AQTGEHLLILDLLGIKNGIIVLTKADR--V--DEARIE 122 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcc-------hhhHHHHHHHHhcCCCceEEEEecccc--c--cHHHHH
Confidence 99999999999999999999999999999999965 799999999999999999999999999 3 234555
Q ss_pred HHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccC-CCCCCCCCCeEEEEEEEE--
Q 010985 227 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE-ITPRDPNGPFRMPIIDKF-- 303 (496)
Q Consensus 227 ~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~-~~~~~~~~p~~~~i~~~~-- 303 (496)
+..+++...+. +. +.+++++|+.+|+||++| .+.|..+. .+.++.+.|||++|+++|
T Consensus 123 ~~i~~Il~~l~---l~---~~~i~~~s~~~g~GI~~L--------------k~~l~~L~~~~e~d~~~~fri~IDraFtV 182 (447)
T COG3276 123 QKIKQILADLS---LA---NAKIFKTSAKTGRGIEEL--------------KNELIDLLEEIERDEQKPFRIAIDRAFTV 182 (447)
T ss_pred HHHHHHHhhcc---cc---cccccccccccCCCHHHH--------------HHHHHHhhhhhhhccCCceEEEEeeEEEe
Confidence 55555444443 33 568899999999999985 44444443 466788999999999999
Q ss_pred ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCCCCcccc
Q 010985 304 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 383 (496)
Q Consensus 304 ~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~~~ 383 (496)
+|.|+|++|++.||++++||++++.|.++.++|+|||.++.++++|.||++|+++|+|++.+++.||++|++++ +..++
T Consensus 183 KGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~-~~~v~ 261 (447)
T COG3276 183 KGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE-PLEVT 261 (447)
T ss_pred ccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCC-CCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999987 44678
Q ss_pred cEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEeeec
Q 010985 384 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKF 463 (496)
Q Consensus 384 ~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~ 463 (496)
.+|.+.+.+... -..++..+....+|.+..+.+|++..+... +.+.+..|+..-..
T Consensus 262 ~~~~~~~~i~~~-~~~~l~~~~~~hi~~g~~~~~~~i~~l~~~-----------------------~~l~~~k~i~~~~~ 317 (447)
T COG3276 262 TRLIVELEIDPL-FKKTLKQGQPVHIHVGLRSVTGRIVPLEKN-----------------------AELNLVKPIALGDN 317 (447)
T ss_pred eEEEEEEEeccc-cccccCCCceEEEEEeccccceEeeecccc-----------------------ceeeeecccccccC
Confidence 889998887432 236788999999999999999998765311 33334444443221
Q ss_pred cCcCccceEEEEeC--CcEEEEEEEEEcCCC
Q 010985 464 ADFAQLGRFTLRTE--GKTVAVGKVTELPTV 492 (496)
Q Consensus 464 ~~~~~lgrfilr~~--g~tva~G~V~~v~~~ 492 (496)
++++||+. ..+.+++.|+....+
T Consensus 318 ------~~l~lr~~~a~~~~~g~rvl~~~~~ 342 (447)
T COG3276 318 ------DRLVLRDNSAVIKLAGARVLSLNLP 342 (447)
T ss_pred ------ceEEEEcccceeeeccceEEecCCC
Confidence 46666665 456666666655544
No 29
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-45 Score=349.77 Aligned_cols=378 Identities=23% Similarity=0.340 Sum_probs=312.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchh------HHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEe-ee
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VG 134 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~------~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~-~~ 134 (496)
..-.++++++|..|+|||||++.| ..|.+|+. .++++.|+. .+||+|+....++.++..+..-+.... ..
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVL--TQgeLDnG~GrARln~FRh~HEi-qsGrTSsis~evlGFd~~g~vVNY~~~~ta 240 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVL--TQGELDNGNGRARLNIFRHPHEI-QSGRTSSISNEVLGFDNRGKVVNYAQNMTA 240 (591)
T ss_pred cceEEEEEEecCcccCcceeeeee--ecccccCCCCeeeeehhcchhhh-ccCcccccchhcccccccccccchhhcccH
Confidence 344689999999999999999998 56777765 477777766 689999999999888765443322222 11
Q ss_pred eEEEEeCCeEEEEEeCCCCcccHhHHhhccc--cCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 010985 135 RAHFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 212 (496)
Q Consensus 135 ~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~--~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK 212 (496)
....+...+.++|||.+||.+|.++++.++. -+|+++|||+|..|.. ..|+||+.++.++++| ++|+++|
T Consensus 241 EEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~-------~tTrEHLgl~~AL~iP-fFvlvtK 312 (591)
T KOG1143|consen 241 EEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT-------WTTREHLGLIAALNIP-FFVLVTK 312 (591)
T ss_pred HHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc-------cccHHHHHHHHHhCCC-eEEEEEe
Confidence 2234556788999999999999999999986 6899999999999964 6899999999999999 8999999
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHhcCCCc--------------------cCCeeEEeeccccccccccccccCCCCCC
Q 010985 213 MDDHTVNWSKERYDEIESKMTPFLKASGYNV--------------------KKDVQFLPISGLMGLNMKTRVDKSLCPWW 272 (496)
Q Consensus 213 ~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~--------------------~~~~~~ipiSa~~g~gi~~l~~~~~~~w~ 272 (496)
||++ +..-++.+.+++..+++..|+.. ...+|++.+|..+|+|+.-
T Consensus 313 ~Dl~----~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l---------- 378 (591)
T KOG1143|consen 313 MDLV----DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL---------- 378 (591)
T ss_pred eccc----cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH----------
Confidence 9993 34567788899999999888752 2246899999999999875
Q ss_pred ChhhHHHHHhccCCCCC------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC----ceEEEEEEE
Q 010985 273 NGPCLFEALDRIEITPR------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIY 340 (496)
Q Consensus 273 ~g~~L~~~l~~l~~~~~------~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~----~~~~V~sI~ 340 (496)
|..+|+.+++... ....|..|.|++.| +.+|.|+.|.+.+|.++.|+.+.++|.+ .+.+|-||+
T Consensus 379 ----l~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~ 454 (591)
T KOG1143|consen 379 ----LRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR 454 (591)
T ss_pred ----HHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee
Confidence 4445666554322 23568899999998 6899999999999999999999999976 578999999
Q ss_pred EcCccccccCCCCeEEEEeccCCccCcceeeEEecCCCCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEE
Q 010985 341 CDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECE 419 (496)
Q Consensus 341 ~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~ 419 (496)
+++.++..+.|||.+.+.|..-+...+|+|||+..++..|+.+..|+|.+.+ +-| +.|..||+..+|+|+++++|.
T Consensus 455 Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~l---LfHaT~i~~GFQ~TVhiGsvrqTAv 531 (591)
T KOG1143|consen 455 RNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLL---LFHATYICEGFQATVHIGSVRQTAV 531 (591)
T ss_pred ccccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeeehh---hhhhHhheecceEEEEEcceeeeee
Confidence 9999999999999999999876777799999999999889999999999998 445 899999999999999999999
Q ss_pred EEEEEEEeecCCCccccccceeecCCcEEEEEEEE-CceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcCC
Q 010985 420 IVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV-NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 491 (496)
Q Consensus 420 i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~-~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~ 491 (496)
|..|.. ..+|++|+.|.|.|.| .+|-++.+ |.-+|+++|.|.|+|.|++|.+
T Consensus 532 i~~I~~-------------~d~lrtg~~AvV~f~F~~hPEyir~-------G~~ilfReG~tKGiG~Vt~Vfp 584 (591)
T KOG1143|consen 532 ITHIDD-------------ADCLRTGKWAVVKFCFAYHPEYIRE-------GSPILFREGKTKGIGEVTKVFP 584 (591)
T ss_pred eeeecc-------------cccccCCceEEEEEEecCCchhccC-------CCeeeeecccccccceEEEEEe
Confidence 887642 2459999999999997 46655544 6677888999999999999864
No 30
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-46 Score=362.32 Aligned_cols=370 Identities=37% Similarity=0.644 Sum_probs=333.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..+.+++++++||+++||||+.+ +.+|.++.+.+.++++++.+.|+.+|.|+|++|.+..|+++|+|++.....+++
T Consensus 3 ~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t 79 (391)
T KOG0052|consen 3 KEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 79 (391)
T ss_pred CcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccc
Confidence 45678999999999999999997 789999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
..+.++++|.|||++|+++|+.+.++||.++++|.+..|.||+++...+|+++|+.++..+|+.++|+.+||||.....|
T Consensus 80 ~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~ 159 (391)
T KOG0052|consen 80 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 159 (391)
T ss_pred eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987778
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEE
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 300 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~ 300 (496)
++.+++++....+...++.++++. .. ..
T Consensus 160 s~~r~~ei~k~~~~~~~~~g~n~~----------------------------------~~------------------~~ 187 (391)
T KOG0052|consen 160 SEARYEEIKKEVSSYIKKIGYNPA----------------------------------AV------------------LQ 187 (391)
T ss_pred cccchhhhheeeeeeeeccccCCh----------------------------------hh------------------hc
Confidence 888888886655555544444310 00 12
Q ss_pred EEEc--cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCC-
Q 010985 301 DKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA- 377 (496)
Q Consensus 301 ~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~- 377 (496)
++++ +.| +..|.++.++.+...|...+.++++..++++.-.++.+|++++++..++...++++|.++.+..
T Consensus 188 ~~~~~~g~~------~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~ 261 (391)
T KOG0052|consen 188 DVYKIGGIG------VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKN 261 (391)
T ss_pred cceeeccee------eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceeccccc
Confidence 2221 222 7788999999999999888899999999998888999999999999999999999999998876
Q ss_pred CCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECc
Q 010985 378 KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 456 (496)
Q Consensus 378 ~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~ 456 (496)
.|+.....|.|++++ ++| ..|..||.|++.||+...+|++..|..++|..+|...+..|+++++++.+.+...|.+
T Consensus 262 ~p~~~~~g~t~qvii---lnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~k 338 (391)
T KOG0052|consen 262 DPPVEAAGFTAQVII---LNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGK 338 (391)
T ss_pred CCccccccceeeEEE---ecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCC
Confidence 566677889999999 556 7899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeeccCcCccceEEEEeCCcEEEEEEEEEcCCCCC
Q 010985 457 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 494 (496)
Q Consensus 457 pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~~~~ 494 (496)
|+|+|.|++++.+|||.+|+...|+|.|+|.++.+...
T Consensus 339 p~~ve~~~~~~~l~rfav~d~~~tvavgvikav~k~~~ 376 (391)
T KOG0052|consen 339 PLCVESFSDYVPLGRFAVRDMRQTVAVGVIKAVDKKDA 376 (391)
T ss_pred ccccccccccccccchhhhhhhccccccceeeeeeccc
Confidence 99999999999999999999999999999999876654
No 31
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-40 Score=312.16 Aligned_cols=343 Identities=26% Similarity=0.402 Sum_probs=283.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe--
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 140 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-- 140 (496)
++.+||+++||++||||||+.+|. |. -+|...+|-+||+|+..++.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Als---Gv-------------------------wT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALS---GV-------------------------WTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehhh---ce-------------------------eeechhHHHhcCcEEEeccccCceEe
Confidence 678999999999999999999983 22 245567888899999987653211
Q ss_pred ------------------C------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHH
Q 010985 141 ------------------E------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 196 (496)
Q Consensus 141 ------------------~------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~ 196 (496)
. -+.+.|+|+|||+-.+.+|++|+...|++||||+|+++. .++||+||+.
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc------PQPQT~EHl~ 133 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC------PQPQTREHLM 133 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC------CCCchHHHHH
Confidence 0 256899999999999999999999999999999999975 4799999999
Q ss_pred HHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhh
Q 010985 197 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 276 (496)
Q Consensus 197 ~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~ 276 (496)
.+..+|++++|++-||+|+ + ++++..+-.+++++|++..-- ++.|+||+||..+.||+.
T Consensus 134 AleIigik~iiIvQNKIDl--V--~~E~AlE~y~qIk~FvkGt~A---e~aPIIPiSA~~~~NIDa-------------- 192 (415)
T COG5257 134 ALEIIGIKNIIIVQNKIDL--V--SRERALENYEQIKEFVKGTVA---ENAPIIPISAQHKANIDA-------------- 192 (415)
T ss_pred HHhhhccceEEEEecccce--e--cHHHHHHHHHHHHHHhccccc---CCCceeeehhhhccCHHH--------------
Confidence 9999999999999999999 3 566666677778888876543 367999999999999998
Q ss_pred HHHHHh-ccCCCCCCCCCCeEEEEEEEEc----------cCCeEEEEEEEEeeeecCCEEEEecCC------------ce
Q 010985 277 LFEALD-RIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNK------------AQ 333 (496)
Q Consensus 277 L~~~l~-~l~~~~~~~~~p~~~~i~~~~~----------~~G~v~~g~v~~G~l~~g~~v~~~p~~------------~~ 333 (496)
|.++|. .+|.|.++.++|.+|+|.++|. -.|-|+.|.+.+|.+++||++.+.|+- ..
T Consensus 193 l~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~ 272 (415)
T COG5257 193 LIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPIT 272 (415)
T ss_pred HHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEee
Confidence 555554 5899999999999999999993 268899999999999999999999974 24
Q ss_pred EEEEEEEEcCccccccCCCCeEEEEec---cCCccCcceeeEEecCCCCcccccEEEEEEEEccccc------c-ccccC
Q 010985 334 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD------N-AIFTA 403 (496)
Q Consensus 334 ~~V~sI~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~------~-~~i~~ 403 (496)
.+|.||+-....+++|.||..+++... .+.+.|.-.|.|+..++..|+....|+.+...|+..- + .+|+.
T Consensus 273 T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~ 352 (415)
T COG5257 273 TEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKT 352 (415)
T ss_pred EEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccC
Confidence 689999999999999999999998554 3445677789999999998999999999999975211 2 58999
Q ss_pred CcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEeeeccCcCccceEEEEeC--C--c
Q 010985 404 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTE--G--K 479 (496)
Q Consensus 404 G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lgrfilr~~--g--~ 479 (496)
|-..++.+++.++-+.|.+.. . -.+++.|.+|+|.+.. .|.++-+. + |
T Consensus 353 ~E~Lml~VGtatT~GvV~~~k--------------------~--d~~ev~Lk~Pvcae~g------~rvaisRri~~rWR 404 (415)
T COG5257 353 NEVLMLNVGTATTVGVVTSAK--------------------K--DEIEVKLKRPVCAEIG------ERVAISRRIGNRWR 404 (415)
T ss_pred CCeEEEEeecceeEEEEEEec--------------------C--ceEEEEeccceecCCC------CEEEEEeeecceEE
Confidence 999999999998888777642 1 2467778899999875 36665332 2 8
Q ss_pred EEEEEEEEE
Q 010985 480 TVAVGKVTE 488 (496)
Q Consensus 480 tva~G~V~~ 488 (496)
.+|+|.|..
T Consensus 405 LIG~G~ik~ 413 (415)
T COG5257 405 LIGYGTIKE 413 (415)
T ss_pred EEeEEEEec
Confidence 999999874
No 32
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.6e-39 Score=344.86 Aligned_cols=278 Identities=24% Similarity=0.348 Sum_probs=229.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
+||+|+||+|||||||+++|++.+|.+..... .-.++||+.++|+++|+|+......++|+++.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~---------------v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~ki 66 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEA---------------VAERVMDSNDLERERGITILAKNTAIRYNGTKI 66 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCccccc---------------ceeecccCchHHHhCCccEEeeeEEEEECCEEE
Confidence 69999999999999999999999998765320 013689999999999999999999999999999
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHH
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 225 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~ 225 (496)
+|+|||||.+|...+.++++.+|++||||||..|.+ .||++++..+...++| +|||+||||++.. ++
T Consensus 67 nlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~-------~qT~~~l~~a~~~~ip-~IVviNKiD~~~a-----~~ 133 (594)
T TIGR01394 67 NIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPSA-----RP 133 (594)
T ss_pred EEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------HHHHHHHHHHHHCCCC-EEEEEECCCCCCc-----CH
Confidence 999999999999999999999999999999999854 6999999999999999 7899999998432 35
Q ss_pred HHHHHHHHHHHHhcCCCc-cCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEEE-
Q 010985 226 DEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF- 303 (496)
Q Consensus 226 ~~i~~~l~~~l~~~~~~~-~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~~- 303 (496)
.++.+++..++..++... ...+|++++||++|.+...+.. ..+.-.+.|...++.+|.|..+.+.||++.|++++
T Consensus 134 ~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~---~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~ 210 (594)
T TIGR01394 134 DEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD---PSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDY 210 (594)
T ss_pred HHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcc---cccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEe
Confidence 566677777777665431 1246899999999987654321 01111122445667788887778899999999987
Q ss_pred -ccCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceeeEEec
Q 010985 304 -KDMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 375 (496)
Q Consensus 304 -~~~G~v~~g~v~~G~l~~g~~v~~~p~~~---~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 375 (496)
+..|++++|||++|+|++||.|.+.|.+. ..+|++|+.+ +.++++|.|||+|++ .++ .++.+|++|++
T Consensus 211 d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i--~gl--~~i~~Gdtl~~ 286 (594)
T TIGR01394 211 DEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAV--AGL--EDINIGETIAD 286 (594)
T ss_pred eCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEE--eCC--cccCCCCEEeC
Confidence 57899999999999999999999999742 5789999875 679999999999986 465 46899999998
Q ss_pred CCC
Q 010985 376 VAK 378 (496)
Q Consensus 376 ~~~ 378 (496)
++.
T Consensus 287 ~~~ 289 (594)
T TIGR01394 287 PEV 289 (594)
T ss_pred CCc
Confidence 874
No 33
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=7.2e-39 Score=302.76 Aligned_cols=218 Identities=64% Similarity=1.051 Sum_probs=197.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
||+++||+|||||||+++|++.+|.++...+.++++.+...|.+++.+++++|..++|+++|+|++.....+++.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 68999999999999999999999999999888999888899999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 226 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~ 226 (496)
|+|||||++|...++.++..+|++|+|||+..+.++..+....++.+++..+..++++++|+|+||||+...+++++.++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999999866665555678999998888888777999999999965456778899
Q ss_pred HHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCC
Q 010985 227 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 287 (496)
Q Consensus 227 ~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~ 287 (496)
++.+++..+++..++. ..+++++|+||++|.|+.+... .++||+|+||++.|+.+.++
T Consensus 161 ~i~~~l~~~l~~~~~~-~~~~~ii~iSA~tg~gi~~~~~--~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 161 EIKKELSPFLKKVGYN-PKDVPFIPISGLTGDNLIEKSE--NMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHcCCC-cCCceEEEeecCcCCCCCcCCC--CCCCccCCcHHHHHhCCCCC
Confidence 9999999999988875 2357899999999999998754 59999999999999988654
No 34
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=7.8e-37 Score=323.84 Aligned_cols=279 Identities=23% Similarity=0.330 Sum_probs=227.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...+||+|+||+|||||||+++|++..|.+..... .-.++||..++|+++|+|+......+++++
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~---------------~~~~v~D~~~~E~erGiTi~~~~~~i~~~~ 67 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE---------------TQERVMDSNDLEKERGITILAKNTAIKWND 67 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccc---------------cceeeeccccccccCceEEEEEEEEEecCC
Confidence 35789999999999999999999988887765320 013789999999999999999999999999
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccH
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
+.++|+|||||.+|...+..+++.+|++|+|||+..|.. .|++.++..+..+++| .|||+||+|++.+
T Consensus 68 ~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~-------~qt~~~l~~a~~~gip-~IVviNKiD~~~a---- 135 (607)
T PRK10218 68 YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPM-------PQTRFVTKKAFAYGLK-PIVVINKVDRPGA---- 135 (607)
T ss_pred EEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCcc-------HHHHHHHHHHHHcCCC-EEEEEECcCCCCC----
Confidence 999999999999999999999999999999999999854 6999999999999999 6889999998543
Q ss_pred HHHHHHHHHHHHHHHhcCCCc-cCCeeEEeecccccccccccccc--CCCCCCChhhHHHHHhccCCCCCCCCCCeEEEE
Q 010985 223 ERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDK--SLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 299 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~-~~~~~~ipiSa~~g~gi~~l~~~--~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i 299 (496)
++.++.+++..++..++... ..++|++++||++|.|..++... ...+| |...++.+|+|.++.++||++.|
T Consensus 136 -~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~L-----ld~Ii~~iP~P~~~~~~Pl~~~V 209 (607)
T PRK10218 136 -RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPL-----YQAIVDHVPAPDVDLDGPFQMQI 209 (607)
T ss_pred -chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHH-----HHHHHHhCCCCCCCCCCCeEEEE
Confidence 35566667777766554431 13578999999999975443210 01122 33467778988888889999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeeecCCEEEEecC-Cc--eEEEEEEEEc----CccccccCCCCeEEEEeccCCccCccee
Q 010985 300 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPN-KA--QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 370 (496)
Q Consensus 300 ~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~-~~--~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G 370 (496)
++++ +..|++++|||++|+|++||.|.+.+. +. ..+|.+|... +.++++|.|||+|++ .|+ .++..|
T Consensus 210 ~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~G 285 (607)
T PRK10218 210 SQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TGL--GELNIS 285 (607)
T ss_pred EeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEE--ECc--cccccC
Confidence 9986 568999999999999999999999886 43 5778888755 678999999999994 555 458899
Q ss_pred eEEecCCC
Q 010985 371 FVLSSVAK 378 (496)
Q Consensus 371 ~vl~~~~~ 378 (496)
++|++++.
T Consensus 286 dTl~~~~~ 293 (607)
T PRK10218 286 DTVCDTQN 293 (607)
T ss_pred cEEecCCC
Confidence 99997763
No 35
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=2.6e-37 Score=289.87 Aligned_cols=207 Identities=36% Similarity=0.628 Sum_probs=187.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
||+|+||+|||||||+++|++.+|.++.+.+.+++++....++.++.+++++|..++|+++|+|++.....+++++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999999999999998888888888888888889999999999999999999999999999999999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 226 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~ 226 (496)
|+|||||.+|...+..++..+|++|+|+|++.+.. .++++++.++...+.|++|+|+||+|+ .++.++.+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-------~~~~~~~~~~~~~~~~~iIvviNK~D~--~~~~~~~~~ 151 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-------EQTRRHSYILSLLGIRHVVVAVNKMDL--VDYSEEVFE 151 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCCcEEEEEEchhc--ccCCHHHHH
Confidence 99999999999999999999999999999998743 577888888888887778889999998 445667788
Q ss_pred HHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCC
Q 010985 227 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 287 (496)
Q Consensus 227 ~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~ 287 (496)
.+..+++.+++.+++. ..+++|+||++|.|+.+... .++||.|+||+++|+.++++
T Consensus 152 ~i~~~~~~~~~~~~~~---~~~ii~iSA~~g~ni~~~~~--~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 152 EIVADYLAFAAKLGIE---DITFIPISALDGDNVVSRSE--NMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHHcCCC---CceEEEEeCCCCCCCccCCC--CCCCCCCCcHHHHHhcCCCC
Confidence 8888999999888865 46799999999999998764 59999999999999998875
No 36
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.3e-36 Score=323.71 Aligned_cols=267 Identities=22% Similarity=0.386 Sum_probs=218.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 141 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-- 141 (496)
..+||+|+||+|+|||||+++|++.+|.++.+. ...+.+|+.++|+++|+|++.....+.+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~----------------~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE----------------MREQVLDSMDLERERGITIKAQAVRLNYKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc----------------ccccccCCChHHHhcCCCeeeeEEEEEEEcC
Confidence 468999999999999999999999998886542 12577899999999999999887777663
Q ss_pred ---CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 142 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 142 ---~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
.+.++|||||||.+|...+.++++.||++|+|+|++++.. .|+.+++..+...++| +|+|+||+|+...
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~-------~qt~~~~~~~~~~~ip-iIiViNKiDl~~~ 137 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIE-------AQTLANVYLALENDLE-IIPVINKIDLPSA 137 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcCCCcc
Confidence 2789999999999999999999999999999999999853 5888888888778888 8999999998432
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEE
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 298 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~ 298 (496)
+ .+++.+++... +++. ...++++||++|.|+.++ |...++.+|.|..+.++|+++.
T Consensus 138 ~-----~~~~~~el~~~---lg~~---~~~vi~vSAktG~GI~~L-------------le~I~~~lp~p~~~~~~pl~~~ 193 (595)
T TIGR01393 138 D-----PERVKKEIEEV---IGLD---ASEAILASAKTGIGIEEI-------------LEAIVKRVPPPKGDPDAPLKAL 193 (595)
T ss_pred C-----HHHHHHHHHHH---hCCC---cceEEEeeccCCCCHHHH-------------HHHHHHhCCCCCCCCCCCeEEE
Confidence 2 22333334333 2332 235899999999999984 3334566788888889999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcC---ccccccCCCCeEEEEeccCCc-cCcceeeE
Q 010985 299 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD---NRVRHAGPGENLRIRLSGIEE-EDILSGFV 372 (496)
Q Consensus 299 i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~~~l~~~~~-~~i~~G~v 372 (496)
|.+++ ++.|++++|||.+|+|+.||+|.+.|.+...+|.+|..++ .+++++.||| +++.+.|+.. .++++||+
T Consensus 194 V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdt 272 (595)
T TIGR01393 194 IFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDT 272 (595)
T ss_pred EEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCE
Confidence 99998 5789999999999999999999999999999999999875 6789999999 5555666643 67999999
Q ss_pred EecCCCC
Q 010985 373 LSSVAKP 379 (496)
Q Consensus 373 l~~~~~~ 379 (496)
|++.+++
T Consensus 273 l~~~~~~ 279 (595)
T TIGR01393 273 ITHVKNP 279 (595)
T ss_pred EECCCCc
Confidence 9987643
No 37
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.5e-36 Score=323.43 Aligned_cols=268 Identities=24% Similarity=0.395 Sum_probs=219.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~- 141 (496)
...+||+|+||+|||||||+++|++.+|.++.+.+ ..+++|..++|+++|+|++.....+.|.
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~----------------~~~~lD~~~~ErerGiTi~~~~v~~~~~~ 68 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM----------------KAQVLDSMDLERERGITIKAQAVRLNYKA 68 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc----------------ccccccCchHHhhcCCcccccEEEEEEEc
Confidence 45689999999999999999999999998875431 2578999999999999999887777664
Q ss_pred ----CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 010985 142 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 142 ----~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~ 217 (496)
++.++|||||||.+|...+.++++.+|++|||||++.|. +.|+.+++..+...++| +|+|+||+|+..
T Consensus 69 ~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv-------~~qt~~~~~~~~~~~lp-iIvViNKiDl~~ 140 (600)
T PRK05433 69 KDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENDLE-IIPVLNKIDLPA 140 (600)
T ss_pred cCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHHHHHCCCC-EEEEEECCCCCc
Confidence 588999999999999999999999999999999999984 36888899888888998 899999999843
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEE
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 297 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~ 297 (496)
.+ +.++.+++... +++. ...++++||++|.|+.++ |...++.+|.|..+.++|+++
T Consensus 141 a~-----~~~v~~ei~~~---lg~~---~~~vi~iSAktG~GI~~L-------------l~~I~~~lp~P~~~~~~pl~~ 196 (600)
T PRK05433 141 AD-----PERVKQEIEDV---IGID---ASDAVLVSAKTGIGIEEV-------------LEAIVERIPPPKGDPDAPLKA 196 (600)
T ss_pred cc-----HHHHHHHHHHH---hCCC---cceEEEEecCCCCCHHHH-------------HHHHHHhCccccCCCCCCceE
Confidence 32 22333444333 3332 235899999999999884 223446678888888899999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc---CccccccCCCCeEEEEeccCC-ccCcceee
Q 010985 298 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIE-EEDILSGF 371 (496)
Q Consensus 298 ~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~---~~~v~~a~aG~~v~~~l~~~~-~~~i~~G~ 371 (496)
.|.+++ +..|++++|||.+|+|+.||+|.+.|.+...+|.+|..+ ..+++++.|||++.+ +.++. ..++++||
T Consensus 197 ~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGdIg~i-~~~ik~~~~~~~Gd 275 (600)
T PRK05433 197 LIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEVGYI-IAGIKDVRDARVGD 275 (600)
T ss_pred EEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCCEEEE-ecccccccccCCCC
Confidence 999987 578999999999999999999999999999999999875 478899999995544 55553 36799999
Q ss_pred EEecCCCC
Q 010985 372 VLSSVAKP 379 (496)
Q Consensus 372 vl~~~~~~ 379 (496)
+|++.+.+
T Consensus 276 tl~~~~~~ 283 (600)
T PRK05433 276 TITLAKNP 283 (600)
T ss_pred EEECCCCc
Confidence 99977643
No 38
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=3e-36 Score=294.44 Aligned_cols=281 Identities=25% Similarity=0.353 Sum_probs=232.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+..||||+.|+|||||||+..||.+.|.+..+. -....+||+...|+++|+|+-.....+.|++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e---------------~v~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFRERE---------------EVAERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhcccccccc---------------chhhhhcCccchhhhcCcEEEeccceeecCC
Confidence 4578999999999999999999999999887653 1224689999999999999999999999999
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccH
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
+.++++|||||.||-.+..+.++..|.++|+|||.+|.+ +||+-.+..+..+|.+ .|||+||+|.+.+
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-------PQTrFVlkKAl~~gL~-PIVVvNKiDrp~A---- 135 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALALGLK-PIVVINKIDRPDA---- 135 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCC-------CchhhhHHHHHHcCCC-cEEEEeCCCCCCC----
Confidence 999999999999999999999999999999999999987 7999999999999998 5799999999654
Q ss_pred HHHHHHHHHHHHHHHhcCCCc-cCCeeEEeeccccccccccccccCCCCCCChhhHHH-HHhccCCCCCCCCCCeEEEEE
Q 010985 223 ERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPRDPNGPFRMPII 300 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~-~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~-~l~~l~~~~~~~~~p~~~~i~ 300 (496)
+.+++.+++-.++-.++-+. +-++|++..||+.|.--..+.+... ---| |++ .++++|.|..+.+.||+|.+.
T Consensus 136 -rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~---~m~p-Lfe~I~~hvp~P~~~~d~PlQ~qvt 210 (603)
T COG1217 136 -RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEAD---DMAP-LFETILDHVPAPKGDLDEPLQMQVT 210 (603)
T ss_pred -CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccccc---chhH-HHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 45567777777777776542 3467999999999875444322110 0112 444 678899999889999999987
Q ss_pred EEE--ccCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceee
Q 010985 301 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 371 (496)
Q Consensus 301 ~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~---~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 371 (496)
..- .-.|.+..|||++|++++||.|.+...+ ...+|..+..+ +.++++|.|||+|+ +.|+. ++..|+
T Consensus 211 ~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVa--iaG~~--~~~igd 286 (603)
T COG1217 211 QLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVA--IAGLE--DINIGD 286 (603)
T ss_pred eeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEE--EcCcc--cccccc
Confidence 652 4589999999999999999999887655 45678888765 67899999999999 57774 488999
Q ss_pred EEecCCCC
Q 010985 372 VLSSVAKP 379 (496)
Q Consensus 372 vl~~~~~~ 379 (496)
++|+++++
T Consensus 287 Ti~d~~~~ 294 (603)
T COG1217 287 TICDPDNP 294 (603)
T ss_pred cccCCCCc
Confidence 99999743
No 39
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-37 Score=287.47 Aligned_cols=346 Identities=23% Similarity=0.341 Sum_probs=266.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe----
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---- 140 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~---- 140 (496)
.+|++++||+|||||||..+|... ......|..+..++||+|.|.++..+..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~------------------------~STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa 62 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL------------------------GSTAAFDKHPQSTERGITLDLGFSTMTVLSPA 62 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh------------------------ccchhhccCCcccccceeEeecceeeeccccc
Confidence 489999999999999999998411 1233467778888999999999887654
Q ss_pred -----CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 141 -----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 141 -----~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
+..+++|+|+|||...+++.+.++...|..++|||+..|. +.||.|++.+...+-.+ ++||+||+|.
T Consensus 63 rLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~-------QtQtAEcLiig~~~c~k-lvvvinkid~ 134 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK-------QTQTAECLIIGELLCKK-LVVVINKIDV 134 (522)
T ss_pred ccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc-------ccccchhhhhhhhhccc-eEEEEecccc
Confidence 2356799999999999999999999999999999999994 58999999888777544 8999999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccc----cccccccccCCCCCCChhhHHHHHhc-cCCCCCC
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG----LNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRD 290 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g----~gi~~l~~~~~~~w~~g~~L~~~l~~-l~~~~~~ 290 (496)
.+.+..+..+++....++.-|+..+|. .+.|++++||..| ++|.+ |.++|.. +-.|.++
T Consensus 135 lpE~qr~ski~k~~kk~~KtLe~t~f~--g~~PI~~vsa~~G~~~~~~i~e--------------L~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 135 LPENQRASKIEKSAKKVRKTLESTGFD--GNSPIVEVSAADGYFKEEMIQE--------------LKEALESRIFEPKRD 198 (522)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhcCcC--CCCceeEEecCCCccchhHHHH--------------HHHHHHHhhcCCCcC
Confidence 655555667788888899999999987 5689999999999 45544 5566654 6788999
Q ss_pred CCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcc
Q 010985 291 PNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 368 (496)
Q Consensus 291 ~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~ 368 (496)
...||.|.|+++| +|.|+|.+|+|.+|.|+.|+.|.+..-+..-+|||++++++++.+|.+|+++++.+...+...+.
T Consensus 199 ~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klle 278 (522)
T KOG0461|consen 199 EEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLE 278 (522)
T ss_pred CCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHh
Confidence 9999999999998 79999999999999999999999988888889999999999999999999999999988887788
Q ss_pred eeeEEecCCCCcccccEEEEEEEEccccc--cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCc----------ccc
Q 010985 369 SGFVLSSVAKPVAAVTEFIAQLQILELLD--NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKK----------PMK 436 (496)
Q Consensus 369 ~G~vl~~~~~~~~~~~~f~a~i~~~~~~~--~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~----------~~~ 436 (496)
||- ++.++. ..+ ..|-+..++.+. ..+|..-....+-++..++.+.+.-+. ..|.-+.. ...
T Consensus 279 Rgi-~~~pg~-Lk~---~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff~-d~d~~~~tf~~~kEye~~E~d 352 (522)
T KOG0461|consen 279 RGI-CGPPGT-LKS---TKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFFK-DTDGTTSTFQLDKEYENGEFD 352 (522)
T ss_pred ccc-cCCCcc-cce---eeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEEee-ccCCcccccccchhhhccccc
Confidence 874 344442 222 233333322122 145544444444455555555544322 22221110 112
Q ss_pred ccceeecCCcEEEEEEEECceEEeeecc
Q 010985 437 KKVLFVKNGAIVVCRIQVNNSICTEKFA 464 (496)
Q Consensus 437 ~~~~~l~~g~~~~v~~~~~~pi~~e~~~ 464 (496)
--|..+.+.+...+-|.+++|+.+.+|+
T Consensus 353 ~~Pa~~~~~~~~~aL~~FEkpv~~P~~s 380 (522)
T KOG0461|consen 353 MLPALLAPCDVIQALFSFEKPVFLPEYS 380 (522)
T ss_pred cChhhcCCchheeeeeeecccccCcccc
Confidence 3466788888899999999999988764
No 40
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-37 Score=305.46 Aligned_cols=267 Identities=23% Similarity=0.327 Sum_probs=226.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+.+|++|+.|+|||||||..+||..+|.++.+..+ ..+||+.+.||+||+|+..-...+.+.
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q----------------~q~LDkl~vERERGITIkaQtasify~ 120 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQ----------------EQVLDKLQVERERGITIKAQTASIFYK 120 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCch----------------hhhhhhhhhhhhcCcEEEeeeeEEEEE
Confidence 3567899999999999999999999999998876533 357999999999999999988888887
Q ss_pred C---eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 142 T---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 142 ~---~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
+ +.++|||||||-||-.+..+.+..||++||||||++|+ +.||...+.++...|.. +|.|+||+|++.+
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGv-------qAQT~anf~lAfe~~L~-iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGV-------QAQTVANFYLAFEAGLA-IIPVLNKIDLPSA 192 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCc-------hHHHHHHHHHHHHcCCe-EEEeeeccCCCCC
Confidence 7 99999999999999999999999999999999999996 48999999999999998 8999999999766
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEE
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 298 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~ 298 (496)
+ .+++.+++.+.+... ..+++.+||++|.|++++ |.+.++.+|+|....++|||+.
T Consensus 193 d-----pe~V~~q~~~lF~~~------~~~~i~vSAK~G~~v~~l-------------L~AII~rVPpP~~~~d~plr~L 248 (650)
T KOG0462|consen 193 D-----PERVENQLFELFDIP------PAEVIYVSAKTGLNVEEL-------------LEAIIRRVPPPKGIRDAPLRML 248 (650)
T ss_pred C-----HHHHHHHHHHHhcCC------ccceEEEEeccCccHHHH-------------HHHHHhhCCCCCCCCCcchHHH
Confidence 4 345556666555432 347899999999999985 5668899999999999999999
Q ss_pred EEEEEc--cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcC---ccccccCCCCeEEEEeccCC-ccCcceeeE
Q 010985 299 IIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD---NRVRHAGPGENLRIRLSGIE-EEDILSGFV 372 (496)
Q Consensus 299 i~~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~~~l~~~~-~~~i~~G~v 372 (496)
+++++. -.|.++.++|..|.+++||+|..+.++++..|+.+.+++ .++....|||...+.. ++. ..+...|++
T Consensus 249 ifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~-~mr~~~ea~IGdT 327 (650)
T KOG0462|consen 249 IFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIIC-NMRNVKEAQIGDT 327 (650)
T ss_pred hhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEe-cccccccccccce
Confidence 999873 589999999999999999999999999888888887763 4566666776655533 333 466889999
Q ss_pred EecCC
Q 010985 373 LSSVA 377 (496)
Q Consensus 373 l~~~~ 377 (496)
+++..
T Consensus 328 i~~~~ 332 (650)
T KOG0462|consen 328 IAHKS 332 (650)
T ss_pred eeecc
Confidence 98765
No 41
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.8e-35 Score=289.80 Aligned_cols=268 Identities=24% Similarity=0.392 Sum_probs=228.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..+..+|++|+.|.|||||||..+|+..+|.++.+.+. +.++|+...||+||+|+......+.+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~----------------~Q~LDsMdiERERGITIKaq~v~l~Y 68 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR----------------AQVLDSMDIERERGITIKAQAVRLNY 68 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH----------------HHhhhhhhhHhhcCceEEeeEEEEEE
Confidence 45667899999999999999999999999999998864 46899999999999999988777655
Q ss_pred C-----CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 141 E-----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~-----~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
. .+.++|||||||-||..+.-+++..|.++||||||++|+ +.||.....++...+.. +|-|+||+||
T Consensus 69 k~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGv-------eAQTlAN~YlAle~~Le-IiPViNKIDL 140 (603)
T COG0481 69 KAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDL 140 (603)
T ss_pred EeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccch-------HHHHHHHHHHHHHcCcE-EEEeeecccC
Confidence 3 388999999999999999999999999999999999995 48999999999999988 9999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCe
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPF 295 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~ 295 (496)
+.++ .+.+++++...+ |+. ....+.+||++|.|++++ |.+.++.+|+|..+.+.|+
T Consensus 141 P~Ad-----pervk~eIe~~i---Gid---~~dav~~SAKtG~gI~~i-------------Le~Iv~~iP~P~g~~~~pL 196 (603)
T COG0481 141 PAAD-----PERVKQEIEDII---GID---ASDAVLVSAKTGIGIEDV-------------LEAIVEKIPPPKGDPDAPL 196 (603)
T ss_pred CCCC-----HHHHHHHHHHHh---CCC---cchheeEecccCCCHHHH-------------HHHHHhhCCCCCCCCCCcc
Confidence 7664 234455555443 444 235788999999999985 5567889999999999999
Q ss_pred EEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc---CccccccCCCCeEEEEeccC-CccCcce
Q 010985 296 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILS 369 (496)
Q Consensus 296 ~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~---~~~v~~a~aG~~v~~~l~~~-~~~~i~~ 369 (496)
+..|.|+| .-.|.|+..||..|++++||+|.++.+++...|..+.++ ..+.+...||+..-+.. ++ +..+.+.
T Consensus 197 kALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGeVG~~~a-~iK~v~d~~V 275 (603)
T COG0481 197 KALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGEVGYIIA-GIKDVRDARV 275 (603)
T ss_pred eEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCceeEEEE-eeeecccCcc
Confidence 99999987 458999999999999999999999999999999999887 45778899999776633 33 3367899
Q ss_pred eeEEecCC
Q 010985 370 GFVLSSVA 377 (496)
Q Consensus 370 G~vl~~~~ 377 (496)
||+++..+
T Consensus 276 GDTiT~~~ 283 (603)
T COG0481 276 GDTITLAS 283 (603)
T ss_pred cceEeccC
Confidence 99999544
No 42
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=2e-34 Score=266.36 Aligned_cols=192 Identities=32% Similarity=0.493 Sum_probs=165.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
++++|+++||+|||||||+++|++... ..|+..+...+.+|..++|+++|+|++.....|++++.
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~ 65 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANR 65 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCe
Confidence 358999999999999999999986531 23333333346799999999999999999999999999
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHH
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.++|+|||||.+|+..+.+++..+|++++|||+..|.. .|+++++.++..+++|++|+|+||||+ .+ .++
T Consensus 66 ~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~~~iIvviNK~D~--~~-~~~ 135 (195)
T cd01884 66 HYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-------PQTREHLLLARQVGVPYIVVFLNKADM--VD-DEE 135 (195)
T ss_pred EEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCcEEEEEeCCCC--CC-cHH
Confidence 99999999999999999999999999999999998843 799999999999999878899999998 32 456
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCC-hhhHHHHHhccCC
Q 010985 224 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-GPCLFEALDRIEI 286 (496)
Q Consensus 224 ~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~-g~~L~~~l~~l~~ 286 (496)
.++.+.+++..+++.+|+++ .+++++|+||++|.|+.+ .++||+ +++|+++|+.+.+
T Consensus 136 ~~~~~~~~i~~~l~~~g~~~-~~v~iipiSa~~g~n~~~-----~~~w~~~~~~l~~~l~~~~~ 193 (195)
T cd01884 136 LLELVEMEVRELLSKYGFDG-DNTPIVRGSALKALEGDD-----PNKWVKKILELLDALDSYIP 193 (195)
T ss_pred HHHHHHHHHHHHHHHhcccc-cCCeEEEeeCccccCCCC-----CCcchhcHhHHHHHHHhCCC
Confidence 67778899999999999863 468999999999999865 379997 7999999997643
No 43
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=1.1e-31 Score=292.70 Aligned_cols=281 Identities=22% Similarity=0.267 Sum_probs=207.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+.+||+|+||+|+|||||+++|++.+|.+... |+. ...++++|+.++|+++|+|++.....+.|.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------g~v-~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~ 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKI------------GEV-HDGAATMDWMEQEQERGITITSAATTCFWK 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCcccc------------ccc-cCCcccCCCCHHHHhCCCCEeccEEEEEEC
Confidence 4457899999999999999999999999876431 111 123689999999999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|+|||||.+|...+.++++.+|++|+||||..|. +.|+++++..+...++| .|+++||||+...+
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~-------~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~-- 143 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGV-------EPQSETVWRQADKYKVP-RIAFVNKMDRTGAD-- 143 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCc-------chhhHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 999999999999999999999999999999999999985 37999999999999999 67999999995433
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccc-ccccccc------------------------------------
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG-LNMKTRV------------------------------------ 264 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g-~gi~~l~------------------------------------ 264 (496)
+.++.+++++.+.... -...+|+|+..+ .|+.++.
T Consensus 144 ---~~~~~~~i~~~l~~~~-----~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (693)
T PRK00007 144 ---FYRVVEQIKDRLGANP-----VPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKL 215 (693)
T ss_pred ---HHHHHHHHHHHhCCCe-----eeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHH
Confidence 2233344433332210 123445555443 0000000
Q ss_pred -----------------------------------ccCCCCCCCh--------hhHHH-HHhccCCCCC-----------
Q 010985 265 -----------------------------------DKSLCPWWNG--------PCLFE-ALDRIEITPR----------- 289 (496)
Q Consensus 265 -----------------------------------~~~~~~w~~g--------~~L~~-~l~~l~~~~~----------- 289 (496)
.....|.+.| ..|++ .+..+|.|..
T Consensus 216 ~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~ 295 (693)
T PRK00007 216 IEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDG 295 (693)
T ss_pred HHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCc
Confidence 0011112211 12444 3445666531
Q ss_pred ---------CCCCCeEEEEEEEEc--cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCe
Q 010985 290 ---------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGEN 354 (496)
Q Consensus 290 ---------~~~~p~~~~i~~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~ 354 (496)
+++.|+...|+.+.. ..|.+.++||+||+|+.||.|+....++..+|.+|... ..+++++.||++
T Consensus 296 ~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI 375 (693)
T PRK00007 296 EEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDI 375 (693)
T ss_pred cccceeecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcE
Confidence 235688888988873 56999999999999999999987666667788888765 578999999999
Q ss_pred EEEEeccCCccCcceeeEEecCC
Q 010985 355 LRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 355 v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
|++ .|++ +++.|++|+++.
T Consensus 376 ~~i--~gl~--~~~~GdtL~~~~ 394 (693)
T PRK00007 376 AAA--VGLK--DTTTGDTLCDEK 394 (693)
T ss_pred EEE--eCCc--cCCcCCEeeCCC
Confidence 995 5554 478999998654
No 44
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=6e-32 Score=296.30 Aligned_cols=285 Identities=22% Similarity=0.337 Sum_probs=217.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe--
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 140 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-- 140 (496)
...+||+++||+|||||||+++|++.+|.+.... .| .++++|+.++|+++|+|++.....+.|
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 82 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----EQLALDFDEEEQARGITIKAANVSMVHEY 82 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cC-----cceecCccHHHHHhhhhhhccceEEEEEe
Confidence 4578999999999999999999999999887632 12 256799999999999999998776655
Q ss_pred --CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 141 --ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 141 --~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
.++.++|+|||||.+|...+.++++.+|++|+|||+..|+. .||+.++..+...++| .|+++||||+...
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~-------~~t~~~~~~~~~~~~~-~iv~iNK~D~~~~ 154 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVM-------PQTETVLRQALRERVK-PVLFINKVDRLIK 154 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCC-------ccHHHHHHHHHHcCCC-eEEEEECchhhcc
Confidence 47889999999999999999999999999999999999853 7999999998888998 6899999998543
Q ss_pred C------ccHHHHHHHHHHHHHHHHhcC---------CCccCCeeEEeeccccccccccc--cc----------c-----
Q 010985 219 N------WSKERYDEIESKMTPFLKASG---------YNVKKDVQFLPISGLMGLNMKTR--VD----------K----- 266 (496)
Q Consensus 219 ~------~~~~~~~~i~~~l~~~l~~~~---------~~~~~~~~~ipiSa~~g~gi~~l--~~----------~----- 266 (496)
+ ..++++.++..++..++..+. +.+. +-.+++.|++.++++... .. .
T Consensus 155 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~-~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~ 233 (731)
T PRK07560 155 ELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVE-DGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGK 233 (731)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCC-CCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCC
Confidence 3 223556666666666665442 1111 124667799888777510 00 0
Q ss_pred -----CCCCCCChhhHHHHH-hccCCCCC-------------------------CCCCCeEEEEEEEE--ccCCeEEEEE
Q 010985 267 -----SLCPWWNGPCLFEAL-DRIEITPR-------------------------DPNGPFRMPIIDKF--KDMGTVVMGK 313 (496)
Q Consensus 267 -----~~~~w~~g~~L~~~l-~~l~~~~~-------------------------~~~~p~~~~i~~~~--~~~G~v~~g~ 313 (496)
...|.+ ..|++.+ +.+|.|.. +.+.|+.+.|++++ +..|.+++||
T Consensus 234 ~~~l~~~~Pv~--~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~R 311 (731)
T PRK07560 234 QKELAEKAPLH--EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGR 311 (731)
T ss_pred HHHHHhhccch--hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEE
Confidence 000110 1244443 44666631 23468888888887 4679999999
Q ss_pred EEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceeeEEecCC
Q 010985 314 VESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 314 v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
|++|+|++||.|++.+.+...+|..|+.. ..++++|.||++|++ .|++ ++.+|++|+.+.
T Consensus 312 V~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i--~gl~--~~~~GdtL~~~~ 375 (731)
T PRK07560 312 VFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAV--TGLK--DARAGETVVSVE 375 (731)
T ss_pred EEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEE--Eccc--ccccCCEEeCCC
Confidence 99999999999999998888899999765 568999999999996 4553 477899998765
No 45
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2e-31 Score=288.42 Aligned_cols=250 Identities=27% Similarity=0.417 Sum_probs=194.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
...+.++|+++||+|||||||+++|.. +.+. ....+|+|++.....+.+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~--~~v~-----------------------------~~e~~GIT~~iga~~v~~ 334 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRK--TNVA-----------------------------AGEAGGITQHIGAYQVET 334 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHh--CCcc-----------------------------ccccCceeeeccEEEEEE
Confidence 456789999999999999999999942 1111 112378999999999999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
+++.++|||||||.+|...+.+++..+|++|||||+++|.. +||.+++..+...++| +|||+||||++..
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~-------~qT~e~i~~a~~~~vP-iIVviNKiDl~~a-- 404 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM-------PQTIEAINHAKAAGVP-IIVAINKIDKPGA-- 404 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCC-------HhHHHHHHHHHhcCCc-EEEEEECcccccc--
Confidence 99999999999999999999999999999999999999854 7999999999999999 9999999999433
Q ss_pred cHHHHHHHHHHHHH---HHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEE
Q 010985 221 SKERYDEIESKMTP---FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 297 (496)
Q Consensus 221 ~~~~~~~i~~~l~~---~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~ 297 (496)
+.+ .+..++.. +...++ ..++++|+||++|.|++++++. +....+.+ ....+.+.|++.
T Consensus 405 ~~e---~V~~eL~~~~~~~e~~g----~~vp~vpvSAktG~GI~eLle~----------I~~~~e~~-~l~~~~~~~~~g 466 (787)
T PRK05306 405 NPD---RVKQELSEYGLVPEEWG----GDTIFVPVSAKTGEGIDELLEA----------ILLQAEVL-ELKANPDRPARG 466 (787)
T ss_pred CHH---HHHHHHHHhcccHHHhC----CCceEEEEeCCCCCCchHHHHh----------hhhhhhhh-hcccCCCCCcEE
Confidence 322 23333222 111221 2478999999999999987543 11111111 123456788999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc-CccccccCCCCeEEEEeccCCccCc-ceeeEE
Q 010985 298 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDI-LSGFVL 373 (496)
Q Consensus 298 ~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~~~l~~~~~~~i-~~G~vl 373 (496)
.|.+++ ++.|++++|+|.+|+|+.||.|+++| ...+|++|+.. +.++++|.||+.|.+. |++. + ..|++|
T Consensus 467 ~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl~~--~p~~Gd~l 540 (787)
T PRK05306 467 TVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GLSG--VPQAGDEF 540 (787)
T ss_pred EEEEEEEcCCCeEEEEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEEe--CCCC--CCCCCCEE
Confidence 999887 57899999999999999999999975 56899999984 7799999999999963 4432 4 689998
Q ss_pred ec
Q 010985 374 SS 375 (496)
Q Consensus 374 ~~ 375 (496)
+.
T Consensus 541 ~~ 542 (787)
T PRK05306 541 VV 542 (787)
T ss_pred EE
Confidence 84
No 46
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=3.2e-31 Score=280.84 Aligned_cols=250 Identities=29% Similarity=0.425 Sum_probs=191.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
...+.++|+++||+|+|||||+++|.. +.+. ....+|+|++.....+.+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~--~~v~-----------------------------~~e~~GIT~~ig~~~v~~ 131 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRK--TKVA-----------------------------QGEAGGITQHIGAYHVEN 131 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHh--CCcc-----------------------------cccCCceeecceEEEEEE
Confidence 345668999999999999999999942 1111 112378999998888888
Q ss_pred CCe-EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 010985 141 ETT-RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 141 ~~~-~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~ 219 (496)
.+. .++|+|||||++|...+.+++..+|++|||+|+++|.. +||.+++..+...++| +|+++||+|++..+
T Consensus 132 ~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~-------~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~ 203 (587)
T TIGR00487 132 EDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM-------PQTIEAISHAKAANVP-IIVAINKIDKPEAN 203 (587)
T ss_pred CCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcccccCC
Confidence 655 89999999999999999999999999999999999854 6999999999999999 99999999995432
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCc---cCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeE
Q 010985 220 WSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFR 296 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~---~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~ 296 (496)
.+ ++.+.+. ..++.+ ..+.+++|+||++|.|++++.+. +. .+..+.....+++.|++
T Consensus 204 --~e---~v~~~L~----~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~----------I~-~~~~~~~l~~~~~~~~~ 263 (587)
T TIGR00487 204 --PD---RVKQELS----EYGLVPEDWGGDTIFVPVSALTGDGIDELLDM----------IL-LQSEVEELKANPNGQAS 263 (587)
T ss_pred --HH---HHHHHHH----HhhhhHHhcCCCceEEEEECCCCCChHHHHHh----------hh-hhhhhccccCCCCCCce
Confidence 22 2222222 222110 12368999999999999986542 11 11222233345568999
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEE-cCccccccCCCCeEEEEeccCCccCcceeeEE
Q 010985 297 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC-DDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 373 (496)
Q Consensus 297 ~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~-~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 373 (496)
+.|.+++ ++.|++++|+|.+|+|++||.|.++|. ..+|++|+. +++++++|.||+.|.+. |++. --..|+.+
T Consensus 264 ~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~~-~p~aGd~~ 338 (587)
T TIGR00487 264 GVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEIL--GLSD-VPAAGDEF 338 (587)
T ss_pred eEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEEe--CCCC-CCCCCCEE
Confidence 9999998 688999999999999999999999886 468999998 57899999999999863 5432 11578887
Q ss_pred e
Q 010985 374 S 374 (496)
Q Consensus 374 ~ 374 (496)
.
T Consensus 339 ~ 339 (587)
T TIGR00487 339 I 339 (587)
T ss_pred E
Confidence 6
No 47
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=2e-31 Score=290.88 Aligned_cols=272 Identities=21% Similarity=0.260 Sum_probs=206.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....+||+|+||+|+|||||+++|++.+|.+... |+. ...++++|+.++|+++|+|++.....++++
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~------------~~v-~~~~~~~D~~~~E~~rgiti~~~~~~~~~~ 71 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKI------------GEV-HDGAATMDWMEQEQERGITITSAATTCFWK 71 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCcccc------------ccc-cCCccccCCChhHhhcCCCccceeEEEEEC
Confidence 3467899999999999999999999988876421 111 123678999999999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|+|||||.+|...+.++++.+|++|+|||+..|. +.|+++++..+...++| +|+++||||+...+
T Consensus 72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~-------~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~-- 141 (691)
T PRK12739 72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGV-------EPQSETVWRQADKYGVP-RIVFVNKMDRIGAD-- 141 (691)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCC-------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 999999999999999999999999999999999999985 37999999999999999 67999999995432
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-----------------------------------------------------------
Q 010985 222 KERYDEIESKMTPFLKASGYN----------------------------------------------------------- 242 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~----------------------------------------------------------- 242 (496)
+.++.++++..+....+.
T Consensus 142 ---~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 218 (691)
T PRK12739 142 ---FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVA 218 (691)
T ss_pred ---HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhh
Confidence 333444444333221000
Q ss_pred ------------------------------ccCCeeEEeeccccccccccccccCCCCCCChhhHHHH-HhccCCCCC--
Q 010985 243 ------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEA-LDRIEITPR-- 289 (496)
Q Consensus 243 ------------------------------~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~-l~~l~~~~~-- 289 (496)
...-+|++..||+++.|+.. |++. ...+|.|..
T Consensus 219 e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~~ 284 (691)
T PRK12739 219 EVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDVP 284 (691)
T ss_pred hcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHH--------------HHHHHHHHCCChhhcc
Confidence 00012333334444444443 4443 344565531
Q ss_pred -----------------CCCCCeEEEEEEEEc--cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----Cccc
Q 010985 290 -----------------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRV 346 (496)
Q Consensus 290 -----------------~~~~p~~~~i~~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v 346 (496)
+++.|+...|++++. ..|.+.++||+||+|+.||.|+....++..+|.+|... ..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v 364 (691)
T PRK12739 285 AIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEI 364 (691)
T ss_pred ccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccc
Confidence 345688999998873 57999999999999999999987766777788888664 5789
Q ss_pred cccCCCCeEEEEeccCCccCcceeeEEecCC
Q 010985 347 RHAGPGENLRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 347 ~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
+++.||+++++ .|++ +++.|++|++..
T Consensus 365 ~~~~aGdI~~i--~gl~--~~~~gdtl~~~~ 391 (691)
T PRK12739 365 KEVYAGDIAAA--VGLK--DTTTGDTLCDEK 391 (691)
T ss_pred cccCCCCEEEE--eCCC--cccCCCEEeCCC
Confidence 99999999996 3554 378999998664
No 48
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=7e-31 Score=279.87 Aligned_cols=272 Identities=24% Similarity=0.303 Sum_probs=211.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....+||+|+||.|||||||+.+||+.+|.+.... .....+..||+.+.|++||+|+..+...+.|+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G-------------~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIG-------------EVHDGAATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCc-------------cccCCCccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 55789999999999999999999999999887521 11223678999999999999999999999999
Q ss_pred C-eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 142 T-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 142 ~-~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
+ +.++|||||||-||...+.++++.+|++|+||||..|+. +||+..++.+...++| .|+++||||+...++
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~-------~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~~ 145 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVE-------PQTETVWRQADKYGVP-RILFVNKMDRLGADF 145 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCee-------ecHHHHHHHHhhcCCC-eEEEEECccccccCh
Confidence 6 999999999999999999999999999999999999975 7999999999999999 578999999976653
Q ss_pred cHHHHHHHHHHHHHHHHh----cCCC------------------------------------------------------
Q 010985 221 SKERYDEIESKMTPFLKA----SGYN------------------------------------------------------ 242 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~----~~~~------------------------------------------------------ 242 (496)
. ...+++...|.. ++..
T Consensus 146 ~-----~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~ 220 (697)
T COG0480 146 Y-----LVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEF 220 (697)
T ss_pred h-----hhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhc
Confidence 2 222222222211 0000
Q ss_pred ----------------------------ccCCeeEEeeccccccccccccccCCCCCCChhhHHH-HHhccCCCCC----
Q 010985 243 ----------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPR---- 289 (496)
Q Consensus 243 ----------------------------~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~-~l~~l~~~~~---- 289 (496)
...-.|++.-||.++.|+.. |++ .++.+|.|..
T Consensus 221 de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~--------------lLdav~~~lPsP~e~~~~ 286 (697)
T COG0480 221 DEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDVPPI 286 (697)
T ss_pred CHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHH--------------HHHHHHHHCCChhhcccc
Confidence 00122344444444444433 333 4455666511
Q ss_pred ----------------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----Ccccc
Q 010985 290 ----------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVR 347 (496)
Q Consensus 290 ----------------~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~ 347 (496)
+.+.|+.+.+..+. +..|.+.++||+||+|+.|+.++....+++.+|..|... +.+++
T Consensus 287 ~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~ 366 (697)
T COG0480 287 KGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVD 366 (697)
T ss_pred cccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecc
Confidence 23688988888877 357888889999999999999999888888999999775 57899
Q ss_pred ccCCCCeEEEEeccCCccCcceeeEEecCC
Q 010985 348 HAGPGENLRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 348 ~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
++.||++++ +.|++. ...|+++|+.+
T Consensus 367 ~~~AG~I~a--~~Gl~~--~~tGdTl~~~~ 392 (697)
T COG0480 367 EVPAGDIVA--LVGLKD--ATTGDTLCDEN 392 (697)
T ss_pred cccCccEEE--EEcccc--cccCCeeecCC
Confidence 999999999 456644 68999999776
No 49
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.98 E-value=1.2e-30 Score=273.77 Aligned_cols=280 Identities=20% Similarity=0.235 Sum_probs=209.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.+||+|+||+|||||||+++|++..|.+...... .+++ ......+|+.+.|+++|+|+......+++++
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v--------~~~~-~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~ 78 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRK-SGRHATSDWMEMEKQRGISVTSSVMQFPYRD 78 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCcccccee--------eccc-cCccccCCCcHHHHhhCCceeeeeEEEEECC
Confidence 456899999999999999999999999887543210 0111 1112357899999999999999999999999
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccH
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
+.++|+|||||.+|...+.++++.+|++|+|||+..+. ..+++..+..+...++| +++++||||+...++ .
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~-~ 149 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV-------EPQTRKLMEVCRLRDTP-IFTFINKLDRDGREP-L 149 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCC-------CHHHHHHHHHHHhcCCC-EEEEEECCcccccCH-H
Confidence 99999999999999999999999999999999999884 36889999999889999 889999999865442 1
Q ss_pred HHHHHHHHHHHH-----------------------------------------------------HHHh---------c-
Q 010985 223 ERYDEIESKMTP-----------------------------------------------------FLKA---------S- 239 (496)
Q Consensus 223 ~~~~~i~~~l~~-----------------------------------------------------~l~~---------~- 239 (496)
+.++++.+.+.. ++.. +
T Consensus 150 ~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~le 229 (526)
T PRK00741 150 ELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELE 229 (526)
T ss_pred HHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHH
Confidence 222222221110 0000 0
Q ss_pred ------------CCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCC---------CCCCeEEE
Q 010985 240 ------------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGPFRMP 298 (496)
Q Consensus 240 ------------~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~---------~~~p~~~~ 298 (496)
.+....-+|++..||+++.|+..+ |...++.+|.|... .+.+|...
T Consensus 230 l~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~L-------------Ld~i~~~~P~P~~~~~~~~~~~~~~~~~~~~ 296 (526)
T PRK00741 230 LVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEF-------------LDAFVEWAPAPQPRQTDEREVEPTEEKFSGF 296 (526)
T ss_pred hhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHH-------------HHHHHHHCCCCCcccccceeecCCCCceEEE
Confidence 000011256777788888888764 22344556666321 23567777
Q ss_pred EEEEE-----ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcce
Q 010985 299 IIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 369 (496)
Q Consensus 299 i~~~~-----~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~ 369 (496)
|+.+. +..|++.+.||.||+|+.|+.|+....++..++..++.. +.++++|.|||++++ .++ .+++.
T Consensus 297 VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v--~~l--~~~~~ 372 (526)
T PRK00741 297 VFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGL--HNH--GTIQI 372 (526)
T ss_pred EEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEE--ECC--CCCcc
Confidence 77775 257999999999999999999999888888888887654 578999999999985 443 45889
Q ss_pred eeEEecCC
Q 010985 370 GFVLSSVA 377 (496)
Q Consensus 370 G~vl~~~~ 377 (496)
||+|+..+
T Consensus 373 GDTL~~~~ 380 (526)
T PRK00741 373 GDTFTQGE 380 (526)
T ss_pred CCCccCCC
Confidence 99998755
No 50
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.98 E-value=1.9e-30 Score=283.26 Aligned_cols=281 Identities=22% Similarity=0.276 Sum_probs=204.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+.+||+|+||+|+|||||+++|++.+|.+.... +. ..+++.+|+.+.|+++|+|++.....++++
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~------------~~-~~g~~~~D~~~~e~~rgiti~~~~~~~~~~ 73 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIG------------EV-HDGAATMDWMEQEKERGITITSAATTVFWK 73 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccc------------cc-cCCccccCCCHHHHhcCCCEecceEEEEEC
Confidence 44578999999999999999999999888764311 11 124688999999999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|+|||||.+|...+..+++.+|++|+|||+..|.. .++++++..+...++| +++|+||+|+...+
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~-- 143 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQ-------PQSETVWRQANRYEVP-RIAFVNKMDKTGAN-- 143 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999998853 6889999999999999 67899999995433
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccc-ccc---------------------------------------
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMK--------------------------------------- 261 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~-gi~--------------------------------------- 261 (496)
+..+.+++...+.... -..++|+|+..+. |+.
T Consensus 144 ---~~~~~~~i~~~l~~~~-----~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 215 (689)
T TIGR00484 144 ---FLRVVNQIKQRLGANA-----VPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLV 215 (689)
T ss_pred ---HHHHHHHHHHHhCCCc-----eeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHH
Confidence 2333344433332111 0123444443331 000
Q ss_pred -----------------------cc--------cccCCCCCCCh--------hhHHHHH-hccCCCCC------------
Q 010985 262 -----------------------TR--------VDKSLCPWWNG--------PCLFEAL-DRIEITPR------------ 289 (496)
Q Consensus 262 -----------------------~l--------~~~~~~~w~~g--------~~L~~~l-~~l~~~~~------------ 289 (496)
++ .....+|.+.| ..|++.+ ..+|.|..
T Consensus 216 e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~ 295 (689)
T TIGR00484 216 EAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTE 295 (689)
T ss_pred HHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCC
Confidence 00 00001111111 1244433 44665531
Q ss_pred -------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEE
Q 010985 290 -------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLR 356 (496)
Q Consensus 290 -------~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~ 356 (496)
+++.|+.+.|+++. +..|.+.++||+||+|+.||.|+....+...+|..|... ..+++++.||++|+
T Consensus 296 ~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~ 375 (689)
T TIGR00484 296 KEIERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICA 375 (689)
T ss_pred ceeeecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEE
Confidence 22567888888887 457999999999999999999997666666778777654 46899999999999
Q ss_pred EEeccCCccCcceeeEEecCC
Q 010985 357 IRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 357 ~~l~~~~~~~i~~G~vl~~~~ 377 (496)
+ .|++ +++.|++|++..
T Consensus 376 i--~gl~--~~~~gdtl~~~~ 392 (689)
T TIGR00484 376 A--IGLK--DTTTGDTLCDPK 392 (689)
T ss_pred E--cCCC--CCCCCCEEeCCC
Confidence 5 5554 468899998655
No 51
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.97 E-value=6.2e-30 Score=268.56 Aligned_cols=276 Identities=19% Similarity=0.204 Sum_probs=207.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.+||+|+||+|||||||+++|++..|.+...... .++.+ .....+|+.+.|+++|+|+......+++.+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v--------~~~g~-~~~t~~D~~~~E~~rgisi~~~~~~~~~~~ 79 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAV--------KGRGS-QRHAKSDWMEMEKQRGISITTSVMQFPYRD 79 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCcccccee--------ccccc-cccccCCCCHHHHhcCCcEEEEEEEEeeCC
Confidence 456899999999999999999999999887653210 01111 113458999999999999999999999999
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccH
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
+.++|+|||||.+|...+.+++..+|++|+|||+..+. ..+++..+..+...++| +|+++||+|+...+
T Consensus 80 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~--- 148 (527)
T TIGR00503 80 CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-------ETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD--- 148 (527)
T ss_pred eEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHHHHHHHhcCCC-EEEEEECccccCCC---
Confidence 99999999999999999999999999999999999874 36888888888888888 88999999985433
Q ss_pred HHHHHHHHHHHHHHHhcCC-------------------------------------------------------------
Q 010985 223 ERYDEIESKMTPFLKASGY------------------------------------------------------------- 241 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~------------------------------------------------------------- 241 (496)
+.++.++++..+....+
T Consensus 149 --~~~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 226 (527)
T TIGR00503 149 --PLELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLR 226 (527)
T ss_pred --HHHHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHH
Confidence 12222333333221100
Q ss_pred ------------------CccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCC---------CCCC
Q 010985 242 ------------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGP 294 (496)
Q Consensus 242 ------------------~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~---------~~~p 294 (496)
....-.|++..||+++.|+..+ |...++.+|.|... ...+
T Consensus 227 ~~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~L-------------Ld~i~~~~PsP~~~~~~~~~~~~~~~~ 293 (527)
T TIGR00503 227 DELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDHF-------------LDGLLQWAPKPEARQSDTRTVEPTEEK 293 (527)
T ss_pred HHHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHHH-------------HHHHHHHCCCCccccCCceecCCCCCC
Confidence 0011235566677777776653 22344556666421 2456
Q ss_pred eEEEEEEEEc-----cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCcc
Q 010985 295 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 365 (496)
Q Consensus 295 ~~~~i~~~~~-----~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~ 365 (496)
|...|+.+.. .+|++.+.||.||+|+.|++|+....+++.++..++.. +.++++|.|||++++ .++ .
T Consensus 294 ~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~--~~~--~ 369 (527)
T TIGR00503 294 FSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGL--HNH--G 369 (527)
T ss_pred eeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEE--ECC--C
Confidence 7777777753 47999999999999999999999888888888888654 578999999999985 443 4
Q ss_pred CcceeeEEecCC
Q 010985 366 DILSGFVLSSVA 377 (496)
Q Consensus 366 ~i~~G~vl~~~~ 377 (496)
+++.||+|++..
T Consensus 370 ~~~~GDtl~~~~ 381 (527)
T TIGR00503 370 TIQIGDTFTQGE 381 (527)
T ss_pred CcccCCEecCCC
Confidence 588999998744
No 52
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=1.1e-30 Score=241.14 Aligned_cols=175 Identities=36% Similarity=0.596 Sum_probs=151.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE--e
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--T 140 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~--~ 140 (496)
|+.++|+++||+|||||||+++|++..+.+......+ .....+|..++|+++|+|++.....+. .
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~-------------~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~ 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEE-------------TKNAFLDKHPEERERGITIDLSFISFEKNE 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHH-------------HHHCHHHSSHHHHHCTSSSSSEEEEEEBTE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccc-------------cccccccccchhhhcccccccccccccccc
Confidence 4679999999999999999999999999888765432 013347888999999999999999999 9
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
.++.++|+|||||.+|++++.+++..+|++|+|||+..|. ..|+++++..+..+++| +|||+||||+.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~-------~~~~~~~l~~~~~~~~p-~ivvlNK~D~~---- 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGI-------QPQTEEHLKILRELGIP-IIVVLNKMDLI---- 135 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBS-------THHHHHHHHHHHHTT-S-EEEEEETCTSS----
T ss_pred cccceeecccccccceeecccceecccccceeeeeccccc-------ccccccccccccccccc-eEEeeeeccch----
Confidence 9999999999999999999999999999999999999985 37999999999999999 99999999993
Q ss_pred cHHHHHHHHHHHH-HHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 221 SKERYDEIESKMT-PFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 221 ~~~~~~~i~~~l~-~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+.+++++.+++. .+++..++.....+|++|+||++|+|+..|
T Consensus 136 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~L 178 (188)
T PF00009_consen 136 -EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDEL 178 (188)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred -hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHH
Confidence 667778888887 566777765213589999999999999974
No 53
>PRK13351 elongation factor G; Reviewed
Probab=99.97 E-value=2.7e-29 Score=274.92 Aligned_cols=273 Identities=22% Similarity=0.297 Sum_probs=210.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....+||+|+||+|+|||||+++|++.+|.+..... .. ..++.+|+.+.|+.+|+|+......+.+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~-------v~------~~~~~~d~~~~e~~r~~ti~~~~~~~~~~ 71 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGE-------VE------DGTTVTDWMPQEQERGITIESAATSCDWD 71 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCcccccc-------cc------CCcccCCCCHHHHhcCCCcccceEEEEEC
Confidence 345789999999999999999999988887653210 00 12467899999999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|+|||||.+|...+..+++.+|++|+|+|++.+.. .++.+++..+...++| +++|+||+|+...+
T Consensus 72 ~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~-------~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~-- 141 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQ-------PQTETVWRQADRYGIP-RLIFINKMDRVGAD-- 141 (687)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999998843 5788888888888999 78899999996543
Q ss_pred HHHHHHHHHHHHHHHHhc--------------------------------------------------------------
Q 010985 222 KERYDEIESKMTPFLKAS-------------------------------------------------------------- 239 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~-------------------------------------------------------------- 239 (496)
+.+..++++..+...
T Consensus 142 ---~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (687)
T PRK13351 142 ---LFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALA 218 (687)
T ss_pred ---HHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHH
Confidence 222333332222110
Q ss_pred ------------C--CC-------------ccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCC---
Q 010985 240 ------------G--YN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR--- 289 (496)
Q Consensus 240 ------------~--~~-------------~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~--- 289 (496)
+ +. ...-+|++..||++|.|+..| |...+..+|.|..
T Consensus 219 ~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~L-------------Ld~I~~~lPsP~~~~~ 285 (687)
T PRK13351 219 EFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPL-------------LDAVVDYLPSPLEVPP 285 (687)
T ss_pred hcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHH-------------HHHHHHHCCChhhccc
Confidence 0 00 011245666788888888774 2234455666531
Q ss_pred ---------------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----Cccccc
Q 010985 290 ---------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRH 348 (496)
Q Consensus 290 ---------------~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~ 348 (496)
+++.|+.+.|++++ +..|.++++||++|+|+.||+|++.+.+...+|..|... ..++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 365 (687)
T PRK13351 286 PRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDR 365 (687)
T ss_pred ccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCc
Confidence 34678999999887 457999999999999999999999988878888888654 578999
Q ss_pred cCCCCeEEEEeccCCccCcceeeEEecCC
Q 010985 349 AGPGENLRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 349 a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
|.|||+++ +.|++ ++..|++|++..
T Consensus 366 ~~aGdI~~--i~gl~--~~~~gdtl~~~~ 390 (687)
T PRK13351 366 AKAGDIVA--VAGLK--ELETGDTLHDSA 390 (687)
T ss_pred cCCCCEEE--EECcc--cCccCCEEeCCC
Confidence 99999997 46654 467899998665
No 54
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.97 E-value=1.2e-29 Score=272.10 Aligned_cols=252 Identities=25% Similarity=0.379 Sum_probs=189.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
...+.++|+++||+|||||||+++|+..... ..+.+|+|++...+.+.+
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~-------------------------------~~e~~GiTq~i~~~~v~~ 288 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIA-------------------------------QKEAGGITQKIGAYEVEF 288 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCc-------------------------------cccCCccccccceEEEEE
Confidence 4567789999999999999999999632221 122378888877666555
Q ss_pred C----CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 010985 141 E----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 141 ~----~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~ 216 (496)
. +..++|+|||||..|...+.+++..+|++|||||++.|.. +||.+++..+...++| +|||+||+|++
T Consensus 289 ~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~-------~QT~E~I~~~k~~~iP-iIVViNKiDl~ 360 (742)
T CHL00189 289 EYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVK-------PQTIEAINYIQAANVP-IIVAINKIDKA 360 (742)
T ss_pred EecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCC-------hhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence 3 5899999999999999999999999999999999999853 6999999999999999 89999999994
Q ss_pred CCCccHHHHHHHHHHHHHH---HHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCC
Q 010985 217 TVNWSKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNG 293 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~---l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~ 293 (496)
..+ ++++.+++..+ ....+ ..++++++||++|.|+.++.+. +... ..+.....+++.
T Consensus 361 ~~~-----~e~v~~eL~~~~ll~e~~g----~~vpvv~VSAktG~GIdeLle~----------I~~l-~e~~~lk~~~~~ 420 (742)
T CHL00189 361 NAN-----TERIKQQLAKYNLIPEKWG----GDTPMIPISASQGTNIDKLLET----------ILLL-AEIEDLKADPTQ 420 (742)
T ss_pred ccC-----HHHHHHHHHHhccchHhhC----CCceEEEEECCCCCCHHHHHHh----------hhhh-hhhhcccCCCCC
Confidence 322 23333333221 11122 2468999999999999986542 1111 111122234456
Q ss_pred CeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc-CccccccCCCCeEEEEeccCCccCccee
Q 010985 294 PFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSG 370 (496)
Q Consensus 294 p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~~~l~~~~~~~i~~G 370 (496)
|+...+.+.+ ++.|++++|+|.+|+|+.||.|+++| ...+|+++... +.++.+|.||+.|.+ .|+. .....|
T Consensus 421 ~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV~I--~gl~-~~~~~G 495 (742)
T CHL00189 421 LAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVVEI--WGLS-SVPATG 495 (742)
T ss_pred CceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCceEe--cCcc-cCCCCC
Confidence 7888887776 57899999999999999999999987 45799999854 789999999999985 4542 234568
Q ss_pred eEEecC
Q 010985 371 FVLSSV 376 (496)
Q Consensus 371 ~vl~~~ 376 (496)
+.+.-.
T Consensus 496 d~l~v~ 501 (742)
T CHL00189 496 EHFQVF 501 (742)
T ss_pred CEEEEe
Confidence 877533
No 55
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.97 E-value=8.3e-29 Score=263.14 Aligned_cols=259 Identities=24% Similarity=0.356 Sum_probs=187.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~- 141 (496)
.+.+.|+++||+|||||||+++|..... .. ....|+|.+.+...+.+.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v--~~-----------------------------~~~g~itq~ig~~~~~~~~ 52 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAV--AA-----------------------------KEAGGITQHIGATEVPIDV 52 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccc--cc-----------------------------CCCCceEEeeceeeccccc
Confidence 3457899999999999999999953211 10 111334444433222211
Q ss_pred -----------------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCc
Q 010985 142 -----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 204 (496)
Q Consensus 142 -----------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~ 204 (496)
-..++|+|||||++|...+.++++.+|++|||+|++.|. .+|+.+++.++...++|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~-------~~qt~e~i~~~~~~~vp 125 (586)
T PRK04004 53 IEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGF-------QPQTIEAINILKRRKTP 125 (586)
T ss_pred cccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCC-------CHhHHHHHHHHHHcCCC
Confidence 012799999999999999989999999999999999874 36999999999999999
Q ss_pred eEEEEEeeccCCCCCcc------------------HHHHHHHHHHHHHHHHhcCCCc---------cCCeeEEeeccccc
Q 010985 205 KLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMG 257 (496)
Q Consensus 205 ~~ivviNK~D~~~~~~~------------------~~~~~~i~~~l~~~l~~~~~~~---------~~~~~~ipiSa~~g 257 (496)
+++++||+|+. ..|. ++.|++...++...|...|+.+ ...++++|+||++|
T Consensus 126 -iIvviNK~D~~-~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG 203 (586)
T PRK04004 126 -FVVAANKIDRI-PGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG 203 (586)
T ss_pred -EEEEEECcCCc-hhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC
Confidence 89999999984 2333 3455666666777777777653 13578999999999
Q ss_pred cccccccccCCCCCCChhhHHHHHhc-cCC-CCCCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCc-
Q 010985 258 LNMKTRVDKSLCPWWNGPCLFEALDR-IEI-TPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA- 332 (496)
Q Consensus 258 ~gi~~l~~~~~~~w~~g~~L~~~l~~-l~~-~~~~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~- 332 (496)
.|+.++.+. +...+.. ++. -..+.+.|++++|.+++ ++.|++++|+|.+|+|++||.|.++|.+.
T Consensus 204 eGi~dLl~~----------i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~ 273 (586)
T PRK04004 204 EGIPDLLMV----------LAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGP 273 (586)
T ss_pred CChHHHHHH----------HHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCc
Confidence 999986542 2221211 221 12446789999999998 68999999999999999999999999874
Q ss_pred -eEEEEEEEEc------------CccccccCCCCeEEEEeccCCccCcceeeEE
Q 010985 333 -QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 373 (496)
Q Consensus 333 -~~~V~sI~~~------------~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 373 (496)
.++|++|..+ ...+++|.|...|.+...|++. +..|+-+
T Consensus 274 i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~--~~~g~~~ 325 (586)
T PRK04004 274 IVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLED--ALAGSPL 325 (586)
T ss_pred ceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccc--cCCCCeE
Confidence 5799999975 2566777777767664445433 2345443
No 56
>PRK12740 elongation factor G; Reviewed
Probab=99.97 E-value=1.3e-28 Score=269.23 Aligned_cols=264 Identities=23% Similarity=0.312 Sum_probs=204.3
Q ss_pred EecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEEEeC
Q 010985 71 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDA 150 (496)
Q Consensus 71 ~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDt 150 (496)
+||+|+|||||+++|++.+|.+.... +. ...++++|+.+.|+++|+|++.....+.+.++.++|+||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~------------~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIG------------EV-EDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCc------------cc-cCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 69999999999999999999876421 00 012478999999999999999999999999999999999
Q ss_pred CCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHH
Q 010985 151 PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIES 230 (496)
Q Consensus 151 pG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~ 230 (496)
|||.+|...+..++..+|++|+|+|++.+.. .++..++..+...++| +++|+||+|+...+ +.++.+
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~-----~~~~~~ 134 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGGVE-------PQTETVWRQAEKYGVP-RIIFVNKMDRAGAD-----FFRVLA 134 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-----HHHHHH
Confidence 9999999999999999999999999998753 5788888888888998 78899999985433 222222
Q ss_pred HHHHHHHh------------------------------------------------------------------------
Q 010985 231 KMTPFLKA------------------------------------------------------------------------ 238 (496)
Q Consensus 231 ~l~~~l~~------------------------------------------------------------------------ 238 (496)
++++.+..
T Consensus 135 ~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~ 214 (668)
T PRK12740 135 QLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLE 214 (668)
T ss_pred HHHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHC
Confidence 23222110
Q ss_pred -cCCC-------------ccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCC----------------
Q 010985 239 -SGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP---------------- 288 (496)
Q Consensus 239 -~~~~-------------~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~---------------- 288 (496)
..+. ...-+|++..||++|.|+..+ |...+..+|.|.
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsp~~~~~~~~~~~~~~~~~ 281 (668)
T PRK12740 215 GEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRL-------------LDAVVDYLPSPLEVPPVDGEDGEEGAEL 281 (668)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHH-------------HHHHHHHCCChhhcccccCCCCcccccc
Confidence 0000 011356778899999999874 223445566653
Q ss_pred -CCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEecc
Q 010985 289 -RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSG 361 (496)
Q Consensus 289 -~~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~ 361 (496)
.+++.|+.+.|++++ +..|.++++||++|+|++||+|++.+.++..+|..|... ..++++|.||+++++. |
T Consensus 282 ~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--g 359 (668)
T PRK12740 282 APDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA--K 359 (668)
T ss_pred ccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe--c
Confidence 134678999999887 357999999999999999999999998777777777643 5789999999999974 5
Q ss_pred CCccCcceeeEEecCC
Q 010985 362 IEEEDILSGFVLSSVA 377 (496)
Q Consensus 362 ~~~~~i~~G~vl~~~~ 377 (496)
++ .+++|++|++..
T Consensus 360 l~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 360 LK--DAATGDTLCDKG 373 (668)
T ss_pred cC--ccCCCCEEeCCC
Confidence 54 488999998654
No 57
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1e-28 Score=249.17 Aligned_cols=233 Identities=28% Similarity=0.443 Sum_probs=181.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 141 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-- 141 (496)
+.+-|+++||+|||||||+..+. ...+... -.-|+|.....+.+.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR--~t~Va~~-----------------------------EaGGITQhIGA~~v~~~~~ 52 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIR--KTNVAAG-----------------------------EAGGITQHIGAYQVPLDVI 52 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHh--cCccccc-----------------------------cCCceeeEeeeEEEEeccC
Confidence 45789999999999999999983 2222211 13689999999999985
Q ss_pred -CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 142 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 142 -~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
...++|+|||||+-|.....+|++.+|.++||||+++|.+ +||.|.+..++..++| +||++||||++..+.
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~-------pQTiEAI~hak~a~vP-~iVAiNKiDk~~~np 124 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVM-------PQTIEAINHAKAAGVP-IVVAINKIDKPEANP 124 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcc-------hhHHHHHHHHHHCCCC-EEEEEecccCCCCCH
Confidence 4789999999999999999999999999999999999976 7999999999999999 999999999965542
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCc---cCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEE
Q 010985 221 SKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 297 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~---~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~ 297 (496)
. .+..++ .+.|+.+ ..++.|+|+||++|+|+++|+.. .-.+.....-..+++.+.+.
T Consensus 125 ~-----~v~~el----~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~-----------ill~aev~elka~~~~~a~g 184 (509)
T COG0532 125 D-----KVKQEL----QEYGLVPEEWGGDVIFVPVSAKTGEGIDELLEL-----------ILLLAEVLELKANPEGPARG 184 (509)
T ss_pred H-----HHHHHH----HHcCCCHhhcCCceEEEEeeccCCCCHHHHHHH-----------HHHHHHHHhhhcCCCCcceE
Confidence 2 233332 2334442 24678999999999999997542 11111212233456788888
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc-CccccccCCCCeEEE
Q 010985 298 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRI 357 (496)
Q Consensus 298 ~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~~ 357 (496)
.+.++. +|.|.+++..|..|+|++||.+.++... .+|+.+... ..+++.+.++..+.+
T Consensus 185 tviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~--g~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 185 TVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEY--GRVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred EEEEEEeccCCCceEEEEEecCeEecCCEEEEccCC--CceEEeehhcCCCccccCCCCCeEE
Confidence 888876 7899999999999999999999996554 467776654 678888888866654
No 58
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.7e-29 Score=249.27 Aligned_cols=239 Identities=28% Similarity=0.422 Sum_probs=189.2
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEE
Q 010985 58 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 137 (496)
Q Consensus 58 ~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~ 137 (496)
......+.+-|-|+||+|||||||+.+|. ...+... -.-|+|..++.+.
T Consensus 146 p~~l~~RpPVVTiMGHVDHGKTTLLD~lR--ks~VAA~-----------------------------E~GGITQhIGAF~ 194 (683)
T KOG1145|consen 146 PKLLEPRPPVVTIMGHVDHGKTTLLDALR--KSSVAAG-----------------------------EAGGITQHIGAFT 194 (683)
T ss_pred HhhcCCCCCeEEEeecccCChhhHHHHHh--hCceehh-----------------------------hcCCccceeceEE
Confidence 44456678899999999999999999983 2222111 1268999998877
Q ss_pred EEe-CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 010985 138 FET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 138 ~~~-~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~ 216 (496)
... +|..++|+|||||.-|..+..+|+..+|.++|||.|.+|++ +||.|.+..++..++| +||++||+|.+
T Consensus 195 V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVm-------pQT~EaIkhAk~A~Vp-iVvAinKiDkp 266 (683)
T KOG1145|consen 195 VTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVM-------PQTLEAIKHAKSANVP-IVVAINKIDKP 266 (683)
T ss_pred EecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCcc-------HhHHHHHHHHHhcCCC-EEEEEeccCCC
Confidence 655 67999999999999999999999999999999999999987 7999999999999999 99999999997
Q ss_pred CCCccHHHHHHHHHHHHH---HHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCC
Q 010985 217 TVNWSKERYDEIESKMTP---FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNG 293 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~---~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~ 293 (496)
+++ .+ .+++++.. .++.+| .+++++||||++|+|++.|.+.. .|+..+-.++. ++..
T Consensus 267 ~a~--pe---kv~~eL~~~gi~~E~~G----GdVQvipiSAl~g~nl~~L~eai--------ll~Ae~mdLkA---~p~g 326 (683)
T KOG1145|consen 267 GAN--PE---KVKRELLSQGIVVEDLG----GDVQVIPISALTGENLDLLEEAI--------LLLAEVMDLKA---DPKG 326 (683)
T ss_pred CCC--HH---HHHHHHHHcCccHHHcC----CceeEEEeecccCCChHHHHHHH--------HHHHHHhhccc---CCCC
Confidence 664 22 22332222 233343 47899999999999999875531 02222333333 4678
Q ss_pred CeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc-CccccccCCCCeEEE
Q 010985 294 PFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRI 357 (496)
Q Consensus 294 p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~~ 357 (496)
|+...|.+.. +++|.+.+..|..|+|+.|+.+..+ ..-++|+.+..+ ++++++|.|++.|.+
T Consensus 327 ~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G--~~w~KVr~l~D~nGk~i~~A~Ps~pv~V 391 (683)
T KOG1145|consen 327 PAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAG--KSWCKVRALFDHNGKPIDEATPSQPVEV 391 (683)
T ss_pred CceEEEEEeeecCCccceeEEEEeccccccccEEEEe--chhhhhhhhhhcCCCCccccCCCCceEe
Confidence 8888888876 7999999999999999999999984 455789998766 789999999999986
No 59
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.96 E-value=7.7e-29 Score=271.16 Aligned_cols=287 Identities=21% Similarity=0.336 Sum_probs=207.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEE----E
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH----F 138 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~----~ 138 (496)
...+||+++||+|+|||||+++|++.+|.+.... .| ..+.+|+.++|+++|+|++..... +
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~~-----~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 81 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----QQLYLDFDEQEQERGITINAANVSMVHEY 81 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc----------CC-----ceeecCCCHHHHhhcchhhcccceeEEee
Confidence 3468999999999999999999999999876531 12 135789999999999999987654 6
Q ss_pred EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 139 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
++.++.++|+|||||.+|...+..++..+|++|+|+|+..|.. .++++++..+...++| .++|+||||+...
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~~ 153 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVM-------PQTETVLRQALKENVK-PVLFINKVDRLIN 153 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCC-------ccHHHHHHHHHHcCCC-EEEEEEChhcccc
Confidence 7788999999999999999999999999999999999999853 6899999888888888 5799999998543
Q ss_pred Cc------cHHHHHHHHHHHHHHHHhc-C--------CCccCCeeEEeeccccccccc------------cccc----cC
Q 010985 219 NW------SKERYDEIESKMTPFLKAS-G--------YNVKKDVQFLPISGLMGLNMK------------TRVD----KS 267 (496)
Q Consensus 219 ~~------~~~~~~~i~~~l~~~l~~~-~--------~~~~~~~~~ipiSa~~g~gi~------------~l~~----~~ 267 (496)
++ .++++..+...+...++.. + +.+. +......|++.+++.. ++.. ..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 232 (720)
T TIGR00490 154 ELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVE-DGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDK 232 (720)
T ss_pred hhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechh-hCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhcc
Confidence 32 2345555555555555432 0 0000 0112233444442221 0000 00
Q ss_pred ---CCCCCC-hhhHHHHH-hccCCCCC-------------------------CCCCCeEEEEEEEE--ccCCeEEEEEEE
Q 010985 268 ---LCPWWN-GPCLFEAL-DRIEITPR-------------------------DPNGPFRMPIIDKF--KDMGTVVMGKVE 315 (496)
Q Consensus 268 ---~~~w~~-g~~L~~~l-~~l~~~~~-------------------------~~~~p~~~~i~~~~--~~~G~v~~g~v~ 315 (496)
...|+- -..|++.+ ..+|.|.. +.+.|+...|.+++ ++.|++++|||+
T Consensus 233 ~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~ 312 (720)
T TIGR00490 233 QKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLY 312 (720)
T ss_pred HHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEE
Confidence 001110 12344433 34565531 22467888888886 568999999999
Q ss_pred EeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceeeEEecCC
Q 010985 316 SGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 316 ~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
+|+|++||.|++.+.+...+|..|+.. ..++++|.||++|++ .|++ ++.+|++|++++
T Consensus 313 sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL~~~~ 374 (720)
T TIGR00490 313 SGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAV--IGLK--DAVAGETICTTV 374 (720)
T ss_pred eCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEE--ECcc--ccccCceeecCC
Confidence 999999999999999999999999875 468999999999986 4553 577999998765
No 60
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.96 E-value=2.9e-28 Score=257.83 Aligned_cols=257 Identities=21% Similarity=0.386 Sum_probs=180.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.+.|+++||+|||||||+++|++.. +. .....|+|++.....+.+..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~--v~-----------------------------~~e~ggiTq~iG~~~v~~~~~~ 52 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSA--VA-----------------------------KREAGGITQHIGATEIPMDVIE 52 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc--cc-----------------------------cccCCceecccCeeEeeecccc
Confidence 4679999999999999999996321 11 01124466655544443321
Q ss_pred ----------------eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceE
Q 010985 143 ----------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKL 206 (496)
Q Consensus 143 ----------------~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ 206 (496)
..++|+|||||+.|...+.++++.+|++|+|+|++.|.. .|+.+++..+...++| +
T Consensus 53 ~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~-------~qt~e~i~~l~~~~vp-i 124 (590)
T TIGR00491 53 GICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFK-------PQTQEALNILRMYKTP-F 124 (590)
T ss_pred ccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCC-------HhHHHHHHHHHHcCCC-E
Confidence 238999999999999999999999999999999998743 6899999999888998 8
Q ss_pred EEEEeeccCCCCCccH------------------HHHHHHHHHHHHHHHhcCCCc---------cCCeeEEeeccccccc
Q 010985 207 LLVVNKMDDHTVNWSK------------------ERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMGLN 259 (496)
Q Consensus 207 ivviNK~D~~~~~~~~------------------~~~~~i~~~l~~~l~~~~~~~---------~~~~~~ipiSa~~g~g 259 (496)
|+++||+|+.. .|.. ..+++....+...+...|+.. ...++++|+||++|+|
T Consensus 125 IVv~NK~Dl~~-~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeG 203 (590)
T TIGR00491 125 VVAANKIDRIP-GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEG 203 (590)
T ss_pred EEEEECCCccc-hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCC
Confidence 99999999842 2321 011111122223345555532 2357999999999999
Q ss_pred cccccccCCCCCCChhhHHHHHhc-cC-CCCCCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCc--e
Q 010985 260 MKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA--Q 333 (496)
Q Consensus 260 i~~l~~~~~~~w~~g~~L~~~l~~-l~-~~~~~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~--~ 333 (496)
+++|... |...... ++ ....+.+.|++++|.+++ +|.|++++|.|.+|+|++||.|.++|.+. .
T Consensus 204 ideLl~~----------l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~ 273 (590)
T TIGR00491 204 IPELLTM----------LAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIV 273 (590)
T ss_pred hhHHHHH----------HHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCccc
Confidence 9986431 2211111 21 112356789999999998 58899999999999999999999999874 6
Q ss_pred EEEEEEEEcC------------ccccccCCCCeEEEEeccCCccCcceeeEE
Q 010985 334 VKVLAIYCDD------------NRVRHAGPGENLRIRLSGIEEEDILSGFVL 373 (496)
Q Consensus 334 ~~V~sI~~~~------------~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 373 (496)
++|++|...+ ..+.++.|..-+-+...|++. ...|+.+
T Consensus 274 ~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~--~~aG~~~ 323 (590)
T TIGR00491 274 TRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD--VMAGSPI 323 (590)
T ss_pred EEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC--CCCCCEE
Confidence 8999998653 355666666656555555543 3455554
No 61
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.9e-28 Score=238.80 Aligned_cols=292 Identities=22% Similarity=0.280 Sum_probs=200.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+..++||+-|||||||||...||...|+|.....-+ ||.+. -....|+.+-|++||+++....-.|++.++
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk--------~rk~~-~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~ 81 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVK--------GRKSG-KHAKSDWMEIEKQRGISVTSSVMQFDYADC 81 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceee--------eccCC-cccccHHHHHHHhcCceEEeeEEEeccCCe
Confidence 347899999999999999999999999886644222 11111 123467778999999999999999999999
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHH
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.++|+|||||+||-..+.+.+..+|.||.||||..|+ ++||+..+..|+.-++| ++-++||||+..-+ +-+
T Consensus 82 ~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi-------E~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rd-P~E 152 (528)
T COG4108 82 LVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI-------EPQTLKLFEVCRLRDIP-IFTFINKLDREGRD-PLE 152 (528)
T ss_pred EEeccCCCCccccchhHHHHHHhhheeeEEEecccCc-------cHHHHHHHHHHhhcCCc-eEEEeeccccccCC-hHH
Confidence 9999999999999999999999999999999999994 58999999999999999 99999999995443 344
Q ss_pred HHHHHHHHHHHHHHhcCCCc------------cCCeeEEeeccccc--------ccccc-----c---------------
Q 010985 224 RYDEIESKMTPFLKASGYNV------------KKDVQFLPISGLMG--------LNMKT-----R--------------- 263 (496)
Q Consensus 224 ~~~~i~~~l~~~l~~~~~~~------------~~~~~~ipiSa~~g--------~gi~~-----l--------------- 263 (496)
.++++.+++.-....+.|.. ..+.-....+..++ .+++. +
T Consensus 153 LLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL 232 (528)
T COG4108 153 LLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELEL 232 (528)
T ss_pred HHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHH
Confidence 45555444432222222210 00000000111000 00000 0
Q ss_pred -------------cccCCCCCCChhh--------HHHHH-hccCCCCC---------CCCCCeEEEEEEEE-----ccCC
Q 010985 264 -------------VDKSLCPWWNGPC--------LFEAL-DRIEITPR---------DPNGPFRMPIIDKF-----KDMG 307 (496)
Q Consensus 264 -------------~~~~~~~w~~g~~--------L~~~l-~~l~~~~~---------~~~~p~~~~i~~~~-----~~~G 307 (496)
......|.|-|.. |++.+ +.-|+|.. +.+..|.-.|+.+- +.+.
T Consensus 233 ~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRD 312 (528)
T COG4108 233 VQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRD 312 (528)
T ss_pred HHhhccccCHHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCccccc
Confidence 0011233333322 33332 33344421 11222444444433 3578
Q ss_pred eEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceeeEEecCC
Q 010985 308 TVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 308 ~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
+++.-||.||.+..|+++.....++.+++..-+.+ ++.+++|.|||++++.-.| .++.||+++...
T Consensus 313 RIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG----~~~IGDT~t~Ge 382 (528)
T COG4108 313 RIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHG----TIQIGDTFTEGE 382 (528)
T ss_pred ceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCC----ceeecceeecCc
Confidence 99999999999999999999999998888876654 7899999999999974444 378899998654
No 62
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.96 E-value=1.6e-27 Score=264.40 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=128.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....+||+|+||+|||||||+++|++.+|.+.... .| .++.+|..++|+++|+|++.....+.+.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeeccCcHHHHHhCCceecceeEEEee
Confidence 44678999999999999999999999999876532 12 3567899999999999999887777663
Q ss_pred ----------------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCce
Q 010985 142 ----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 205 (496)
Q Consensus 142 ----------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~ 205 (496)
++.++|+|||||.+|+.++.++++.+|++|+||||.+|+. .||+.++..+...++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~-------~~t~~~~~~~~~~~~p- 152 (843)
T PLN00116 81 MTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR- 152 (843)
T ss_pred cccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc-------ccHHHHHHHHHHCCCC-
Confidence 6889999999999999999999999999999999999964 7999999999999999
Q ss_pred EEEEEeeccCCCCCc--cH----HHHHHHHHHHHHHHH
Q 010985 206 LLLVVNKMDDHTVNW--SK----ERYDEIESKMTPFLK 237 (496)
Q Consensus 206 ~ivviNK~D~~~~~~--~~----~~~~~i~~~l~~~l~ 237 (496)
+|+++||||++-.++ +. .+++++.++++.++.
T Consensus 153 ~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~ 190 (843)
T PLN00116 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMA 190 (843)
T ss_pred EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 789999999952221 12 567788888874443
No 63
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.95 E-value=8.3e-29 Score=246.58 Aligned_cols=206 Identities=16% Similarity=0.172 Sum_probs=169.3
Q ss_pred chhhhcccccccccccCCCCCCCCCCCcchhcccchhhhhhhcchhhhccccccccccCCcceeEEEEEecCCCChHHHH
Q 010985 3 IEEDIRSLQLDSAEENNGVVNPGDARPEEVEVVDKMEEVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTG 82 (496)
Q Consensus 3 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~ 82 (496)
.++.||+.+++.++..|+.|||+|+ +.|....+......+.+.+++.+++...++++..+++++++|+|.||+|||||+
T Consensus 156 ~i~~lr~~li~~~a~vEa~IDfpee-di~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLL 234 (454)
T COG0486 156 LINELREALLELLAQVEANIDFPEE-DIEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLL 234 (454)
T ss_pred HHHHHHHHHHHHHHHheEeCCCCcc-cccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHH
Confidence 5789999999999999999999998 666666677777888899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEEEeCCCCccc------
Q 010985 83 GQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY------ 156 (496)
Q Consensus 83 ~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDtpG~~~~------ 156 (496)
|+|+....+|+++. +|||+|+....+..+|+++.|+||+|.++.
T Consensus 235 NaL~~~d~AIVTdI------------------------------~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~ 284 (454)
T COG0486 235 NALLGRDRAIVTDI------------------------------AGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVER 284 (454)
T ss_pred HHHhcCCceEecCC------------------------------CCCccceEEEEEEECCEEEEEEecCCcccCccHHHH
Confidence 99998888887765 999999999999999999999999998876
Q ss_pred --HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHH
Q 010985 157 --VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTP 234 (496)
Q Consensus 157 --~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~ 234 (496)
+.++...+..||.+++|+|++.+.. .+....+. +...+.| +++|+||+|+.... ....+
T Consensus 285 iGIeRs~~~i~~ADlvL~v~D~~~~~~-------~~d~~~~~-~~~~~~~-~i~v~NK~DL~~~~-~~~~~--------- 345 (454)
T COG0486 285 IGIERAKKAIEEADLVLFVLDASQPLD-------KEDLALIE-LLPKKKP-IIVVLNKADLVSKI-ELESE--------- 345 (454)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCc-------hhhHHHHH-hcccCCC-EEEEEechhccccc-ccchh---------
Confidence 7788888999999999999998632 23333333 2233455 89999999995432 11111
Q ss_pred HHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 235 FLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 235 ~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+. ....+++++|+++|+|++.|.+
T Consensus 346 ---~~----~~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 346 ---KL----ANGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred ---hc----cCCCceEEEEecCccCHHHHHH
Confidence 00 1234789999999999998654
No 64
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.4e-28 Score=228.92 Aligned_cols=347 Identities=22% Similarity=0.346 Sum_probs=253.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe--
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 140 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-- 140 (496)
+..+||+.+||+-+||||++.++. |.-. -..+.|-+|++|+..++.....
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiS---Gv~T-------------------------vrFK~ELERNITIKLGYANAKIYk 87 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAIS---GVHT-------------------------VRFKNELERNITIKLGYANAKIYK 87 (466)
T ss_pred eeeeeecceeccccCcceeeeeec---cceE-------------------------EEehhhhhcceeEEeccccceEEe
Confidence 356999999999999999998873 1100 0113344455666555432111
Q ss_pred -----------------------------------CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCcccccc
Q 010985 141 -----------------------------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 185 (496)
Q Consensus 141 -----------------------------------~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~ 185 (496)
--+.+.|+|+|||.-.+.+|+.++...|+++|+|.+++..
T Consensus 88 c~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC----- 162 (466)
T KOG0466|consen 88 CDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC----- 162 (466)
T ss_pred cCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC-----
Confidence 0255899999999999999999999999999999999865
Q ss_pred CCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 186 EKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 186 ~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.++||.||+.....+..++++++-||+|+.. ++...+-.+++..+++.... ...|++|+||.-+.|++.
T Consensus 163 -PQPQTsEHLaaveiM~LkhiiilQNKiDli~----e~~A~eq~e~I~kFi~~t~a---e~aPiiPisAQlkyNId~--- 231 (466)
T KOG0466|consen 163 -PQPQTSEHLAAVEIMKLKHIIILQNKIDLIK----ESQALEQHEQIQKFIQGTVA---EGAPIIPISAQLKYNIDV--- 231 (466)
T ss_pred -CCCchhhHHHHHHHhhhceEEEEechhhhhh----HHHHHHHHHHHHHHHhcccc---CCCceeeehhhhccChHH---
Confidence 4799999999999999999999999999943 33333444556666665543 367999999999999987
Q ss_pred cCCCCCCChhhHHH-HHhccCCCCCCCCCCeEEEEEEEEc----------cCCeEEEEEEEEeeeecCCEEEEecCCc--
Q 010985 266 KSLCPWWNGPCLFE-ALDRIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA-- 332 (496)
Q Consensus 266 ~~~~~w~~g~~L~~-~l~~l~~~~~~~~~p~~~~i~~~~~----------~~G~v~~g~v~~G~l~~g~~v~~~p~~~-- 332 (496)
+.+ ....+|.|.++...|.++.+.++|. -.|-|+.|.+..|.|++||.+.+.|+-.
T Consensus 232 -----------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~k 300 (466)
T KOG0466|consen 232 -----------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTK 300 (466)
T ss_pred -----------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeee
Confidence 444 4567999999999999999999983 2688999999999999999999999631
Q ss_pred ----e-------EEEEEEEEcCccccccCCCCeEEEEec---cCCccCcceeeEEecCCCCcccccEEEEEEEEccccc-
Q 010985 333 ----Q-------VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD- 397 (496)
Q Consensus 333 ----~-------~~V~sI~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~- 397 (496)
. .+|.|+...+.+++.|.||..+++..+ .+...|--.|+||...+..|....+++...++|..+-
T Consensus 301 d~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllg 380 (466)
T KOG0466|consen 301 DENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLG 380 (466)
T ss_pred cCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhc
Confidence 1 245555666889999999999998554 1222344569999998888888888888887754221
Q ss_pred ----------c-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEeeeccCc
Q 010985 398 ----------N-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADF 466 (496)
Q Consensus 398 ----------~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~ 466 (496)
+ ..+..|-..++.+|+..+.++|..+. ++ .+++.|..|+|.+-.+ .
T Consensus 381 vrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk--------------------~d--~~k~~Lt~P~CteigE-k 437 (466)
T KOG0466|consen 381 VRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVK--------------------AD--MAKIQLTSPVCTEIGE-K 437 (466)
T ss_pred cccccccccchhhhcccCcEEEEEecccccCceEEEEe--------------------cc--eeeeEecCchhcccch-h
Confidence 0 23445566677777777777766542 12 4567788999988653 3
Q ss_pred CccceEEEEeCCcEEEEEEEEE
Q 010985 467 AQLGRFTLRTEGKTVAVGKVTE 488 (496)
Q Consensus 467 ~~lgrfilr~~g~tva~G~V~~ 488 (496)
-+++|-+=+ .=|.+|.|.|.+
T Consensus 438 iAlSRrvek-hWRLIGwg~I~~ 458 (466)
T KOG0466|consen 438 IALSRRVEK-HWRLIGWGQIKA 458 (466)
T ss_pred hhhhhhhhh-heEEecceeEeC
Confidence 334443211 247888888864
No 65
>PTZ00416 elongation factor 2; Provisional
Probab=99.95 E-value=6.1e-27 Score=259.18 Aligned_cols=153 Identities=20% Similarity=0.305 Sum_probs=129.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....+||+|+||+|||||||+++|++.+|.++... .| .++.+|..++|+++|+|++.....+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKN----------AG-----DARFTDTRADEQERGITIKSTGISLYYE 80 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeecccchhhHhhcceeeccceEEEee
Confidence 34567999999999999999999999999876532 22 1356899999999999999887777765
Q ss_pred ----------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 010985 142 ----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 211 (496)
Q Consensus 142 ----------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN 211 (496)
++.++|+|||||.+|..++.++++.+|++|+|||+..|+. .||+.++..+...++| +|+++|
T Consensus 81 ~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~-------~~t~~~~~~~~~~~~p-~iv~iN 152 (836)
T PTZ00416 81 HDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC-------VQTETVLRQALQERIR-PVLFIN 152 (836)
T ss_pred cccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC-------ccHHHHHHHHHHcCCC-EEEEEE
Confidence 6789999999999999999999999999999999999954 7999999999999988 789999
Q ss_pred eccCCCCCcc------HHHHHHHHHHHHHHHH
Q 010985 212 KMDDHTVNWS------KERYDEIESKMTPFLK 237 (496)
Q Consensus 212 K~D~~~~~~~------~~~~~~i~~~l~~~l~ 237 (496)
|||+.-.++. ..++.++.++++..+.
T Consensus 153 K~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 153 KVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred ChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999522222 3567788888887776
No 66
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.1e-28 Score=244.41 Aligned_cols=276 Identities=23% Similarity=0.282 Sum_probs=213.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++..||+|+.|.+||||||.+++||..|.+.... +. .|+ ...||+.+.||.+|+|++.+..++.|
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~------ev--~~~-----~a~md~m~~er~rgITiqSAAt~~~w 101 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIG------EV--RGG-----GATMDSMELERQRGITIQSAATYFTW 101 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeecc------cc--ccC-----ceeeehHHHHHhcCceeeeceeeeee
Confidence 445789999999999999999999999999876433 11 111 56799999999999999999999999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
.+++++|||||||-||.-...++++.-|.+|+|+|+..|+ +.||...++.++..++| .|.++||||+.+++.
T Consensus 102 ~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV-------qsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 102 RDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV-------ESQTETVWRQMKRYNVP-RICFINKMDRMGASP 173 (721)
T ss_pred ccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce-------ehhhHHHHHHHHhcCCC-eEEEEehhhhcCCCh
Confidence 9999999999999999999999999999999999999996 48999999999999999 568999999977653
Q ss_pred cH----------------------------------------------------------HHHHHHHHHHHHHHH-----
Q 010985 221 SK----------------------------------------------------------ERYDEIESKMTPFLK----- 237 (496)
Q Consensus 221 ~~----------------------------------------------------------~~~~~i~~~l~~~l~----- 237 (496)
-. +...+-.+++-+.+.
T Consensus 174 ~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~ 253 (721)
T KOG0465|consen 174 FRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDET 253 (721)
T ss_pred HHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 22 111111111111111
Q ss_pred ---------------------hcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCC-------
Q 010985 238 ---------------------ASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR------- 289 (496)
Q Consensus 238 ---------------------~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~------- 289 (496)
+.-++ ..-+|++.-||+.+.|+..+ |...++.||.|..
T Consensus 254 l~e~fLee~~ps~~~l~~aIRr~Ti~-r~fvPVl~GSAlKNkGVQPl-------------LDAVvdYLPsP~Ev~n~a~~ 319 (721)
T KOG0465|consen 254 LAEMFLEEEEPSAQQLKAAIRRATIK-RSFVPVLCGSALKNKGVQPL-------------LDAVVDYLPSPSEVENYALN 319 (721)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHhh-cceeeEEechhhcccCcchH-------------HHHHHHhCCChhhhcccccc
Confidence 00000 11247777899999999875 4445666665521
Q ss_pred -------------CCC-CCeEEEEEEEEcc-CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccC
Q 010985 290 -------------DPN-GPFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAG 350 (496)
Q Consensus 290 -------------~~~-~p~~~~i~~~~~~-~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~ 350 (496)
..+ .||....+....+ .|...+.||++|+|+.||.|+....+++++|..+.+. .++|+++.
T Consensus 320 ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~ 399 (721)
T KOG0465|consen 320 KETNSKEKVTLSPSRDKDPFVALAFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVL 399 (721)
T ss_pred cCCCCccceEeccCCCCCceeeeEEEeeecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhh
Confidence 112 2666655555433 4889999999999999999999999999999887654 47899999
Q ss_pred CCCeEEEEeccCCccCcceeeEEecC
Q 010985 351 PGENLRIRLSGIEEEDILSGFVLSSV 376 (496)
Q Consensus 351 aG~~v~~~l~~~~~~~i~~G~vl~~~ 376 (496)
|||+|+ |.|+ ++..||++++.
T Consensus 400 AG~I~a--lfGi---dcasGDTftd~ 420 (721)
T KOG0465|consen 400 AGDICA--LFGI---DCASGDTFTDK 420 (721)
T ss_pred ccceee--eecc---ccccCceeccC
Confidence 999999 5665 68899999987
No 67
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.94 E-value=2.1e-26 Score=216.33 Aligned_cols=173 Identities=23% Similarity=0.317 Sum_probs=141.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC----
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 141 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---- 141 (496)
+||+++||+|||||||+++|++..|.+.... .| .++.||....|+++|+|++.....+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL----------AG-----KARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc----------CC-----ceeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 4899999999999999999999998776442 12 1467999999999999999886665554
Q ss_pred ------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 142 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 142 ------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
++.++|+|||||.+|...+..+++.+|++|+|||+..|.. .++++++..+...++| +|+|+||+|+
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~-------~~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVC-------VQTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 7889999999999999999999999999999999999854 6899999998888988 8999999998
Q ss_pred C------CCCccHHHHHHHHHHHHHHHHhcCCCc-----cCC--e-e----EEeeccccccccc
Q 010985 216 H------TVNWSKERYDEIESKMTPFLKASGYNV-----KKD--V-Q----FLPISGLMGLNMK 261 (496)
Q Consensus 216 ~------~~~~~~~~~~~i~~~l~~~l~~~~~~~-----~~~--~-~----~ipiSa~~g~gi~ 261 (496)
. .+++...++.++.+++..+++.+.-.. ... + | ++..|++.|+...
T Consensus 138 ~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~ 201 (222)
T cd01885 138 LILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFT 201 (222)
T ss_pred chhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEec
Confidence 4 233456788899999999888763110 001 1 3 6778999999873
No 68
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.94 E-value=8e-26 Score=213.41 Aligned_cols=192 Identities=26% Similarity=0.394 Sum_probs=152.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcch------hHHHHHHHHHhhcCccchhhhhhcCCchhhh----hcccEEeeeeE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDD------RTIQKYEKEAKDKSRESWYMAYIMDTNEEER----IKGKTVEVGRA 136 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~------~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~----~~G~T~~~~~~ 136 (496)
+|+++|++++|||||+++|.. +..+. ..+.++.+|.+ .|++++...+++++..+++ ..+.+.+....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~~~~~~~~~~~~~~~E~~-~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDNGRGKARLNLFRHKHEVE-SGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIE 77 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCCCCCeEEeehhhhhhhhh-cCchhhhhhhhcccCCCCceecCCCCccccccce
Confidence 589999999999999999963 44433 24566666664 7999998888888776544 22334444445
Q ss_pred EEEeCCeEEEEEeCCCCcccHhHHhhccc--cCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 137 HFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 137 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~--~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
.++..++.++|+|||||++|.+.+++++. .+|++++|||+..+.. .++++++..+..+++| +++|+||+|
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-------~~d~~~l~~l~~~~ip-~ivvvNK~D 149 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-------GMTKEHLGLALALNIP-VFVVVTKID 149 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 67778999999999999999999999986 7999999999998853 6999999999999999 899999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCC--------------------ccCCeeEEeeccccccccccccccCCCCCCCh
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 274 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~--------------------~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g 274 (496)
+ . +++++.+..+++...++..|+. ....+|++++|+.+|+|++.
T Consensus 150 ~--~--~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~------------ 213 (224)
T cd04165 150 L--A--PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDL------------ 213 (224)
T ss_pred c--c--CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHH------------
Confidence 8 2 4667888888888888755443 12245899999999999998
Q ss_pred hhHHHHHhccCCC
Q 010985 275 PCLFEALDRIEIT 287 (496)
Q Consensus 275 ~~L~~~l~~l~~~ 287 (496)
|.++|+.+|++
T Consensus 214 --L~~~L~~lp~~ 224 (224)
T cd04165 214 --LHAFLNLLPLR 224 (224)
T ss_pred --HHHHHHhcCCC
Confidence 67788888763
No 69
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.93 E-value=2.4e-25 Score=215.81 Aligned_cols=174 Identities=26% Similarity=0.309 Sum_probs=139.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
||+++||+|||||||+++|++.+|.+.... +.+ ..++++|+.++|+++|+|++.....+++.++.++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g------------~v~-~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIG------------EVH-GGGATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccc------------ccc-CCccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 689999999999999999999999775421 111 1367899999999999999999999999999999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 226 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~ 226 (496)
|+|||||.+|...+.++++.+|++|+|||+..|. +.++.+++..+...++| +++++||+|+...+ ++
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-------~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~-----~~ 134 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-------EPQTETVWRQADRYNVP-RIAFVNKMDRTGAD-----FF 134 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-----HH
Confidence 9999999999999999999999999999999985 36899999999999999 67899999995432 34
Q ss_pred HHHHHHHHHHHhcCCCccCCeeEEeeccccc-cccccccccCCCCC
Q 010985 227 EIESKMTPFLKASGYNVKKDVQFLPISGLMG-LNMKTRVDKSLCPW 271 (496)
Q Consensus 227 ~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g-~gi~~l~~~~~~~w 271 (496)
.+..+++..+.... -..++|+|+..+ .|+..+.......|
T Consensus 135 ~~~~~l~~~l~~~~-----~~~~~Pisa~~~f~g~vd~~~~~a~~~ 175 (270)
T cd01886 135 RVVEQIREKLGANP-----VPLQLPIGEEDDFRGVVDLIEMKALYW 175 (270)
T ss_pred HHHHHHHHHhCCCc-----eEEEeccccCCCceEEEEccccEEEec
Confidence 55566666654332 235789998755 35555544333344
No 70
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=1.1e-24 Score=202.02 Aligned_cols=163 Identities=26% Similarity=0.452 Sum_probs=126.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC----
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 141 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---- 141 (496)
+||+++|++|+|||||+++|+...+ .+.+|....++++|+|++.....+.+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 5899999999999999999964311 234666778889999999988877765
Q ss_pred ----------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 010985 142 ----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 211 (496)
Q Consensus 142 ----------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN 211 (496)
++.++|+|||||.+|.+.+..++..+|++++|+|+..+.. .++.+++..+...+.| +++|+|
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~N 128 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQ-------TQTAECLVIGEILCKK-LIVVLN 128 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEE
Confidence 7899999999999999999999999999999999998742 4666677777777887 889999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
|+|+......+...+++.+.+...+...++. .++++++||++|.|++++
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L 177 (192)
T cd01889 129 KIDLIPEEERERKIEKMKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAEL 177 (192)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHH
Confidence 9998432222223444444444445444443 568999999999999984
No 71
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.92 E-value=1.4e-24 Score=202.79 Aligned_cols=157 Identities=27% Similarity=0.359 Sum_probs=123.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC----
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 141 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---- 141 (496)
++|+++||+|||||||+.+|.. ..+|....|..+|.|+......+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~----------------------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG----------------------------VWTVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC----------------------------CCCCCCCeeEEcCCceeecccccccccccC
Confidence 5899999999999999999931 11455677778888888776665543
Q ss_pred -----------------------C------eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH
Q 010985 142 -----------------------T------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR 192 (496)
Q Consensus 142 -----------------------~------~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~ 192 (496)
+ +.++|+|||||.+|+..++.++..+|++++|+|+..+.. ..++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~------~~~t~ 126 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCP------QPQTS 126 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCC------CcchH
Confidence 3 789999999999999999999999999999999997421 25788
Q ss_pred HHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 193 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 193 e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+++..+...+++++|+|+||+|+. ....+....++++.+++..... .++++++||++|+|++++
T Consensus 127 ~~l~~~~~~~~~~iiivvNK~Dl~----~~~~~~~~~~~i~~~~~~~~~~---~~~i~~vSA~~g~gi~~L 190 (203)
T cd01888 127 EHLAALEIMGLKHIIIVQNKIDLV----KEEQALENYEQIKKFVKGTIAE---NAPIIPISAQLKYNIDVL 190 (203)
T ss_pred HHHHHHHHcCCCcEEEEEEchhcc----CHHHHHHHHHHHHHHHhccccC---CCcEEEEeCCCCCCHHHH
Confidence 888888888887689999999993 2334455556666666554222 467999999999999984
No 72
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.92 E-value=1.2e-23 Score=232.59 Aligned_cols=225 Identities=23% Similarity=0.373 Sum_probs=168.0
Q ss_pred hhcccEEeeeeEEEEeCCe------------------EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccC
Q 010985 125 RIKGKTVEVGRAHFETETT------------------RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFE 186 (496)
Q Consensus 125 ~~~G~T~~~~~~~~~~~~~------------------~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~ 186 (496)
...|+|++++...+.++.. .++|+|||||+.|...+.+++..+|++++|+|++.|..
T Consensus 490 EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~----- 564 (1049)
T PRK14845 490 EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFK----- 564 (1049)
T ss_pred cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCC-----
Confidence 3489999999988877521 28999999999998888888899999999999998743
Q ss_pred CCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc---------------HHHHHHHHHHH---HHHHHhcCCCc-----
Q 010985 187 KGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS---------------KERYDEIESKM---TPFLKASGYNV----- 243 (496)
Q Consensus 187 ~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~---------------~~~~~~i~~~l---~~~l~~~~~~~----- 243 (496)
+|+.+++..+...++| +|+|+||+|+.. .|. +..++++...+ ...|...|+.+
T Consensus 565 --~qT~e~I~~lk~~~iP-iIVViNKiDL~~-~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~ 640 (1049)
T PRK14845 565 --PQTIEAINILRQYKTP-FVVAANKIDLIP-GWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDR 640 (1049)
T ss_pred --HhHHHHHHHHHHcCCC-EEEEEECCCCcc-ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhh
Confidence 7999999999999998 899999999842 233 11222332222 22255666542
Q ss_pred ----cCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccC------CCCCCCCCCeEEEEEEEE--ccCCeEEE
Q 010985 244 ----KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE------ITPRDPNGPFRMPIIDKF--KDMGTVVM 311 (496)
Q Consensus 244 ----~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~------~~~~~~~~p~~~~i~~~~--~~~G~v~~ 311 (496)
...++++|+||++|+||++|.. .|..+. ....+.+.|++++|.+++ +|.|++++
T Consensus 641 ~~d~~~~v~iVpVSA~tGeGId~Ll~--------------~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt 706 (1049)
T PRK14845 641 VQDFTRTVAIVPVSAKTGEGIPELLM--------------MVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTID 706 (1049)
T ss_pred hhhcCCCceEEEEEcCCCCCHHHHHH--------------HHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEE
Confidence 2467999999999999998643 222111 123346789999999998 68999999
Q ss_pred EEEEEeeeecCCEEEEecCCc--eEEEEEEEEc------------CccccccCCCCeEEEEeccCCccCcceeeEEe
Q 010985 312 GKVESGSVREGDSLLVMPNKA--QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 374 (496)
Q Consensus 312 g~v~~G~l~~g~~v~~~p~~~--~~~V~sI~~~------------~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 374 (496)
|.|.+|+|++||.|.++|.+. ..+|+++... ..++.++.|..-|.+...|++. +..|+-+.
T Consensus 707 ~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~--~~aG~~~~ 781 (1049)
T PRK14845 707 AIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEE--VLAGSPIR 781 (1049)
T ss_pred EEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccc--cCCCCeEE
Confidence 999999999999999999765 7899998742 2467788888888776555543 35565543
No 73
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=3.1e-23 Score=192.51 Aligned_cols=171 Identities=27% Similarity=0.337 Sum_probs=135.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
.++|+++|++|+|||||+++|++..+.+..... ...+++|..+.++.+|+|++.....+.+.+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE---------------VEERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc---------------ccccccccchhHHhcccccccceeEEEECCEE
Confidence 469999999999999999999876666544320 01356788888999999999988889999999
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHH
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 224 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~ 224 (496)
++|+|||||.+|...+...++.+|++++|+|+..+.+ .++...+..+...++| +++|+||+|+... +
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~-----~ 133 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPDA-----R 133 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCC-----C
Confidence 9999999999999999999999999999999998643 4666667766677888 7899999998432 3
Q ss_pred HHHHHHHHHHHHHhcCCCc-cCCeeEEeeccccccccccc
Q 010985 225 YDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 225 ~~~i~~~l~~~l~~~~~~~-~~~~~~ipiSa~~g~gi~~l 263 (496)
+....+++..+++.++... ..+++++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 3445566666665554321 12468999999999999875
No 74
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.91 E-value=1.5e-23 Score=199.80 Aligned_cols=143 Identities=33% Similarity=0.457 Sum_probs=120.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
||+++||+|+|||||+++|++..|.+.... +.. ...+.+|+.++|+.+|+|++.....+++.+.+++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g------------~v~-~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLG------------SVD-KGTTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccc------------ccc-CCcccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 689999999999999999999998876421 111 2246789999999999999999999999999999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 226 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~ 226 (496)
|+|||||.+|...+..+++.+|++++|+|+..+. ..++++++..+...++| +++++||+|+..+++ .+.++
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~-------~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~-~~~~~ 138 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEGV-------QAQTRILWRLLRKLNIP-TIIFVNKIDRAGADL-EKVYQ 138 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCC-------CHHHHHHHHHHHHcCCC-EEEEEECccccCCCH-HHHHH
Confidence 9999999999999999999999999999999884 25888999999889999 678999999965543 33444
Q ss_pred HHHHH
Q 010985 227 EIESK 231 (496)
Q Consensus 227 ~i~~~ 231 (496)
++.+.
T Consensus 139 ~i~~~ 143 (237)
T cd04168 139 EIKEK 143 (237)
T ss_pred HHHHH
Confidence 44443
No 75
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.9e-25 Score=210.56 Aligned_cols=276 Identities=20% Similarity=0.261 Sum_probs=198.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+..||+|+.|+|+||||...++||..|++.... ..-....++|+...||++|+|++.....|.|+
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g-------------~vddgdtvtdfla~erergitiqsaav~fdwk 100 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG-------------DVDDGDTVTDFLAIERERGITIQSAAVNFDWK 100 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhccc-------------ccCCCchHHHHHHHHHhcCceeeeeeeecccc
Confidence 34568999999999999999999999999875432 11134678899999999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
|+++++||||||-+|.-...+.++..|+++.|+|++.|+ ++||...|+.+...++| -++++||||...+++.
T Consensus 101 g~rinlidtpghvdf~leverclrvldgavav~dasagv-------e~qtltvwrqadk~~ip-~~~finkmdk~~anfe 172 (753)
T KOG0464|consen 101 GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGV-------EAQTLTVWRQADKFKIP-AHCFINKMDKLAANFE 172 (753)
T ss_pred cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCc-------ccceeeeehhccccCCc-hhhhhhhhhhhhhhhh
Confidence 999999999999999999999999999999999999995 48999999999999999 5689999998655432
Q ss_pred HHHHHHHHHHHH------------------------------------------------------------------HH
Q 010985 222 KERYDEIESKMT------------------------------------------------------------------PF 235 (496)
Q Consensus 222 ~~~~~~i~~~l~------------------------------------------------------------------~~ 235 (496)
. ..+.+.+.+. ..
T Consensus 173 ~-avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~q 251 (753)
T KOG0464|consen 173 N-AVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQ 251 (753)
T ss_pred h-HHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 1 1111111110 00
Q ss_pred H------------Hhc-------------------CCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhcc
Q 010985 236 L------------KAS-------------------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRI 284 (496)
Q Consensus 236 l------------~~~-------------------~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l 284 (496)
+ ..+ -+. +...|+..-||.++.||..+.+. .--.+
T Consensus 252 lad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~a-q~a~~i~cgsaiknkgiqpllda-------------vtmyl 317 (753)
T KOG0464|consen 252 LADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCA-QKAAPILCGSAIKNKGIQPLLDA-------------VTMYL 317 (753)
T ss_pred HhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhh-hhhcceehhhhhcccCccchhhh-------------hhhcc
Confidence 0 000 000 12235666688888888764322 22235
Q ss_pred CCCCCCCCCCeEEEEEE-------EE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCC
Q 010985 285 EITPRDPNGPFRMPIID-------KF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGP 351 (496)
Q Consensus 285 ~~~~~~~~~p~~~~i~~-------~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~a 351 (496)
|.|......-+.-+-++ +. +.+|..++-|+++|+|+.+-.|....++++-.+..+... +..+++..|
T Consensus 318 pspeernyeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsa 397 (753)
T KOG0464|consen 318 PSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSA 397 (753)
T ss_pred CChhhcchHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhccc
Confidence 55544333222222222 22 468999999999999999999998888877666666542 567889999
Q ss_pred CCeEEEEeccCCccCcceeeEEecCC
Q 010985 352 GENLRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 352 G~~v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
|.+.- ..|+. .-..||+++...
T Consensus 398 gnial--t~glk--~tatgdtivask 419 (753)
T KOG0464|consen 398 GNIAL--TAGLK--HTATGDTIVASK 419 (753)
T ss_pred ccEEE--Eecce--eeccCCeEEecc
Confidence 98754 23443 355788887654
No 76
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.5e-23 Score=206.58 Aligned_cols=303 Identities=23% Similarity=0.310 Sum_probs=211.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEE--
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF-- 138 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~-- 138 (496)
..+..+|+.++.|+|+|||||...|..+.|.|.... .| -+..+|..+.|.+||+|+......+
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~ak----------aG-----e~Rf~DtRkDEQeR~iTIKStAISl~~ 79 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAK----------AG-----ETRFTDTRKDEQERGITIKSTAISLFF 79 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecc----------cC-----CccccccccchhhcceEeeeeeeeehh
Confidence 455678999999999999999999998888776332 22 2456899999999999998876543
Q ss_pred E--------------eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCc
Q 010985 139 E--------------TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 204 (496)
Q Consensus 139 ~--------------~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~ 204 (496)
+ .+++.++|||.|||-||..+.-.+++..|++++|||...|++ -||+..++.+....++
T Consensus 80 e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvC-------VQTETVLrQA~~ERIk 152 (842)
T KOG0469|consen 80 EMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-------VQTETVLRQAIAERIK 152 (842)
T ss_pred hhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceE-------echHHHHHHHHHhhcc
Confidence 1 246889999999999999999999999999999999999988 5999999999988887
Q ss_pred eEEEEEeeccCC--CCCccHHHH----HHHHHHHHHHHHhcCCCccCCeeEE-------eeccccccccccc--------
Q 010985 205 KLLLVVNKMDDH--TVNWSKERY----DEIESKMTPFLKASGYNVKKDVQFL-------PISGLMGLNMKTR-------- 263 (496)
Q Consensus 205 ~~ivviNK~D~~--~~~~~~~~~----~~i~~~l~~~l~~~~~~~~~~~~~i-------piSa~~g~gi~~l-------- 263 (496)
-++++||||+. ...++++.+ +.+.+.+.-.+.-+|..+..++.+. ..|+++|++..-.
T Consensus 153 -Pvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~ 231 (842)
T KOG0469|consen 153 -PVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAK 231 (842)
T ss_pred -ceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHH
Confidence 46899999973 223444332 2222323323333333222223332 3588888865311
Q ss_pred ------------------cccCCCCCCC----------------------------------------------------
Q 010985 264 ------------------VDKSLCPWWN---------------------------------------------------- 273 (496)
Q Consensus 264 ------------------~~~~~~~w~~---------------------------------------------------- 273 (496)
...+..+|..
T Consensus 232 KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~ 311 (842)
T KOG0469|consen 232 KFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDE 311 (842)
T ss_pred HhCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceecccc
Confidence 0111123321
Q ss_pred -------------------hhhHHHHHh-ccCCC-------------------------CCCCCCCeEEEEEEEEc--cC
Q 010985 274 -------------------GPCLFEALD-RIEIT-------------------------PRDPNGPFRMPIIDKFK--DM 306 (496)
Q Consensus 274 -------------------g~~L~~~l~-~l~~~-------------------------~~~~~~p~~~~i~~~~~--~~ 306 (496)
+.+|++.+. ++|.| .++++.|+.|+|+...+ +.
T Consensus 312 kd~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDk 391 (842)
T KOG0469|consen 312 KDLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDK 391 (842)
T ss_pred ccccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCC
Confidence 223333221 24443 24678999999999874 67
Q ss_pred CeE-EEEEEEEeeeecCCEEEEecCCc------eEEEEEEEE-------cCccccccCCCCeEEEEeccCCccCcceeeE
Q 010985 307 GTV-VMGKVESGSVREGDSLLVMPNKA------QVKVLAIYC-------DDNRVRHAGPGENLRIRLSGIEEEDILSGFV 372 (496)
Q Consensus 307 G~v-~~g~v~~G~l~~g~~v~~~p~~~------~~~V~sI~~-------~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~v 372 (496)
|+. ++|||++|.+..|+++++..-+. ..-+|+|++ .-++++...+|.+++ |-|++..-++.|.+
T Consensus 392 gRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiG--lvGvDqfLvKtGTi 469 (842)
T KOG0469|consen 392 GRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIG--LVGVDQFLVKTGTI 469 (842)
T ss_pred ceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEE--EeehhHhhhccCce
Confidence 876 78999999999999999874431 123444442 358999999999999 57888877888887
Q ss_pred EecCCCCcccccEEEE
Q 010985 373 LSSVAKPVAAVTEFIA 388 (496)
Q Consensus 373 l~~~~~~~~~~~~f~a 388 (496)
-......-..+..|..
T Consensus 470 Tt~e~AHNmrvMKFSV 485 (842)
T KOG0469|consen 470 TTSEAAHNMRVMKFSV 485 (842)
T ss_pred eehhhhccceEEEeec
Confidence 7665543344455543
No 77
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=3.2e-23 Score=206.26 Aligned_cols=158 Identities=23% Similarity=0.320 Sum_probs=136.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|||+|.||+|||||+|+|+.....|.+.. +|+|+|.....+++++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~------------------------------aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDI------------------------------AGTTRDSIDIEFERDG 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCC------------------------------CCccccceeeeEEECC
Confidence 4679999999999999999999986666555443 9999999999999999
Q ss_pred eEEEEEeCCCCccc-----------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 010985 143 TRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 211 (496)
Q Consensus 143 ~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN 211 (496)
+.+.||||+|.++- +..++.++..||+++||+||.+|.. .|..+.+.++...|.+ +++|+|
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-------~qD~~ia~~i~~~g~~-~vIvvN 297 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-------EQDLRIAGLIEEAGRG-IVIVVN 297 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-------HHHHHHHHHHHHcCCC-eEEEEE
Confidence 99999999995432 6667788899999999999999965 5888899999999988 889999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+|+ .+.+...+++.+.++...+..++|. |++++||++|.|+..+.+
T Consensus 298 KWDl--~~~~~~~~~~~k~~i~~~l~~l~~a-----~i~~iSA~~~~~i~~l~~ 344 (444)
T COG1160 298 KWDL--VEEDEATMEEFKKKLRRKLPFLDFA-----PIVFISALTGQGLDKLFE 344 (444)
T ss_pred cccc--CCchhhHHHHHHHHHHHHhccccCC-----eEEEEEecCCCChHHHHH
Confidence 9998 3335567888888999888888776 799999999999988754
No 78
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.90 E-value=1.5e-22 Score=182.03 Aligned_cols=156 Identities=28% Similarity=0.490 Sum_probs=120.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-CeE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTR 144 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~~~ 144 (496)
.+|+++|++|+|||||+++|.... .+....+..+++|++.....+.+. +..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~----------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 52 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIE----------------------------TDRLPEEKKRGITIDLGFAYLDLPSGKR 52 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcc----------------------------cccchhhhccCceEEeeeEEEEecCCcE
Confidence 378999999999999999995211 111234455789999888878776 889
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHH
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 224 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~ 224 (496)
+.|+||||+++|...+..++..+|++++|+|++.+.. .++.+.+..+...+.+++++|+||+|+.. ...
T Consensus 53 ~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~-------~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~----~~~ 121 (164)
T cd04171 53 LGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM-------PQTREHLEILELLGIKRGLVVLTKADLVD----EDW 121 (164)
T ss_pred EEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc-------HhHHHHHHHHHHhCCCcEEEEEECccccC----HHH
Confidence 9999999999999888888999999999999987632 46777777777777744999999999832 223
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 225 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 225 ~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.....+++.+.++..++. ..+++++||++|.|++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 122 LELVEEEIRELLAGTFLA---DAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred HHHHHHHHHHHHHhcCcC---CCcEEEEeCCCCcCHHHH
Confidence 445556666666654322 468999999999999984
No 79
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.90 E-value=1.2e-22 Score=191.35 Aligned_cols=165 Identities=20% Similarity=0.322 Sum_probs=130.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC----
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 141 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---- 141 (496)
++|+++||+|+|||||+++|++..+.+... |+.....++.+|..+.|+++|+|++.....+.+.
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCC
Confidence 479999999999999999999888876532 3334445677899999999999998887777553
Q ss_pred -CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC---
Q 010985 142 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT--- 217 (496)
Q Consensus 142 -~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~--- 217 (496)
.+.++|+|||||.+|...+..++..+|++|+|+|+..+.. .++.+++..+...+.| +++|+||+|+..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~-------~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~ 140 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVT-------SNTERLIRHAILEGLP-IVLVINKIDRLILEL 140 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECcccCcccc
Confidence 4789999999999999999999999999999999988742 3566667777777877 889999999841
Q ss_pred ---CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEee
Q 010985 218 ---VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPI 252 (496)
Q Consensus 218 ---~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipi 252 (496)
.....+++.++++++..+++.+++++ .+.++|+
T Consensus 141 ~l~~~~~~~~l~~~i~~~n~~~~~~~~~~--~~~~~p~ 176 (213)
T cd04167 141 KLPPNDAYFKLRHIIDEVNNIIASFSTTL--SFLFSPE 176 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCC--ceEeccC
Confidence 11234678888899999998887752 3445554
No 80
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=1.1e-22 Score=186.00 Aligned_cols=163 Identities=23% Similarity=0.389 Sum_probs=122.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe-----
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET----- 140 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~----- 140 (496)
+||+++|++|+|||||+++|++..|.+..+. ...+.++..+.++.+|+|.+.....+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE----------------MKEQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC----------------CceEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 4899999999999999999998877765422 1134577778888999998876655533
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
.+..++|+|||||.+|...+..++..+|++|+|+|++.+.. .++.+++..+...++| +++|+||+|+....
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~- 135 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE-------AQTLANFYLALENNLE-IIPVINKIDLPSAD- 135 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc-------HhhHHHHHHHHHcCCC-EEEEEECCCCCcCC-
Confidence 46778999999999999999999999999999999988632 3566666666667888 88999999984321
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
..+..+++.+. +++. ..+++++||++|.|++++
T Consensus 136 ----~~~~~~~~~~~---~~~~---~~~~~~~Sa~~g~gi~~l 168 (179)
T cd01890 136 ----PERVKQQIEDV---LGLD---PSEAILVSAKTGLGVEDL 168 (179)
T ss_pred ----HHHHHHHHHHH---hCCC---cccEEEeeccCCCCHHHH
Confidence 12222333322 3332 235899999999999985
No 81
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.89 E-value=5.7e-23 Score=171.62 Aligned_cols=107 Identities=59% Similarity=0.870 Sum_probs=98.7
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEee
Q 010985 382 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 461 (496)
Q Consensus 382 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 461 (496)
.+++|+|++.||++ .+++|.+||++++|+|+.+++|+|.+|.+++|+++|+..+++|++|++|+.+.|+|++++|+|+|
T Consensus 2 ~~~~F~A~i~vl~~-~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e 80 (108)
T cd03704 2 VVTEFEAQIAILEL-KRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLE 80 (108)
T ss_pred cccEEEEEEEEEeC-CCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEE
Confidence 46889999999663 12678999999999999999999999999999998887778899999999999999999999999
Q ss_pred eccCcCccceEEEEeCCcEEEEEEEEEc
Q 010985 462 KFADFAQLGRFTLRTEGKTVAVGKVTEL 489 (496)
Q Consensus 462 ~~~~~~~lgrfilr~~g~tva~G~V~~v 489 (496)
+|+++|.||||+||++|+|+|+|+|+++
T Consensus 81 ~~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 81 KFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EcccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 9999999999999999999999999864
No 82
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=1.5e-23 Score=217.69 Aligned_cols=201 Identities=17% Similarity=0.180 Sum_probs=148.6
Q ss_pred chhhhcccccccccccCCCCCCCCCCCcchhcccchhhhhhhcchhhhccccccccccCCcceeEEEEEecCCCChHHHH
Q 010985 3 IEEDIRSLQLDSAEENNGVVNPGDARPEEVEVVDKMEEVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTG 82 (496)
Q Consensus 3 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~ 82 (496)
.+..||+.+....+..|+.+||+|++. +....+.....+.++.++++.+....+.++..+++++|+++|++|+|||||+
T Consensus 154 ~~~~~r~~l~~~~a~iea~iDf~ee~~-~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLl 232 (449)
T PRK05291 154 LINELREELLELLALVEAAIDFPEEDI-EFLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLL 232 (449)
T ss_pred HHHHHHHHHHHHHHHheEEccCCCCCc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHH
Confidence 478999999999999999999998633 3333444555677777788877777777777788899999999999999999
Q ss_pred HHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEEEeCCCCcccH-----
Q 010985 83 GQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYV----- 157 (496)
Q Consensus 83 ~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDtpG~~~~~----- 157 (496)
|+|+.....+. ...+|+|+|.....+.+++..+.|+||||++++.
T Consensus 233 n~L~~~~~a~v------------------------------~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~ 282 (449)
T PRK05291 233 NALLGEERAIV------------------------------TDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEK 282 (449)
T ss_pred HHHhCCCCccc------------------------------CCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHH
Confidence 99963222111 1238899999988899999999999999987652
Q ss_pred ---hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeeccCCCCCccHHHHHHHHHHHH
Q 010985 158 ---PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 233 (496)
Q Consensus 158 ---~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~ 233 (496)
..+...+..+|++++|+|++.+.. .+....+. ..+.| +++|+||+|+.... . ..
T Consensus 283 ~gi~~~~~~~~~aD~il~VvD~s~~~s----------~~~~~~l~~~~~~p-iiiV~NK~DL~~~~--~--~~------- 340 (449)
T PRK05291 283 IGIERSREAIEEADLVLLVLDASEPLT----------EEDDEILEELKDKP-VIVVLNKADLTGEI--D--LE------- 340 (449)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCC----------hhHHHHHHhcCCCC-cEEEEEhhhccccc--h--hh-------
Confidence 334556789999999999987632 12222222 23566 89999999994221 1 00
Q ss_pred HHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 234 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 234 ~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. ...+++++||++|.|++++.+
T Consensus 341 ---~~------~~~~~i~iSAktg~GI~~L~~ 363 (449)
T PRK05291 341 ---EE------NGKPVIRISAKTGEGIDELRE 363 (449)
T ss_pred ---hc------cCCceEEEEeeCCCCHHHHHH
Confidence 11 134689999999999998644
No 83
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.88 E-value=4.9e-22 Score=165.87 Aligned_cols=106 Identities=30% Similarity=0.433 Sum_probs=98.7
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEee
Q 010985 382 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 461 (496)
Q Consensus 382 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 461 (496)
.+.+|+|+++|++. ..+|.+||++.+|+|+..++|+|.+|.+++|.+|++..+++|++|++|+.|.|+|.+++|+|+|
T Consensus 2 ~~~~f~A~v~~l~~--~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e 79 (107)
T cd04093 2 SSTRFEARILTFNV--DKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLE 79 (107)
T ss_pred cccEEEEEEEEECC--CcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEE
Confidence 46899999999442 3789999999999999999999999999999999887777899999999999999999999999
Q ss_pred eccCcCccceEEEEeCCcEEEEEEEEEc
Q 010985 462 KFADFAQLGRFTLRTEGKTVAVGKVTEL 489 (496)
Q Consensus 462 ~~~~~~~lgrfilr~~g~tva~G~V~~v 489 (496)
+|.++|.+|||+||++|.|+|+|+|+++
T Consensus 80 ~~~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 80 LFKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred EcccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 9999999999999999999999999875
No 84
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.88 E-value=4e-22 Score=193.16 Aligned_cols=150 Identities=26% Similarity=0.373 Sum_probs=121.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
.+||+++||+|||||||+++|++..|.++...... ++. ...+.++|+.++|+++|+|+......+++.++.
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~--------~~~-~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~ 72 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVK--------ARK-SRKHATSDWMEIEKQRGISVTSSVMQFEYRDCV 72 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceec--------ccc-cCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEE
Confidence 47999999999999999999999999887532100 100 123456899999999999999999999999999
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHH
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 224 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~ 224 (496)
++|+|||||.+|...+..+++.+|++|+|+|+..+.. .++...+..+...++| +++++||+|+...+
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-------~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~----- 139 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-------PQTRKLFEVCRLRGIP-IITFINKLDREGRD----- 139 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-------HHHHHHHHHHHhcCCC-EEEEEECCccCCCC-----
Confidence 9999999999999999999999999999999998742 5778888888888999 88999999985443
Q ss_pred HHHHHHHHHHHH
Q 010985 225 YDEIESKMTPFL 236 (496)
Q Consensus 225 ~~~i~~~l~~~l 236 (496)
+.++.++++..+
T Consensus 140 ~~~~~~~l~~~l 151 (267)
T cd04169 140 PLELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHHH
Confidence 233444554444
No 85
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.2e-22 Score=205.00 Aligned_cols=247 Identities=22% Similarity=0.355 Sum_probs=172.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.-+.+.++|+||+|.|||-|+..|.... . .+.-..|+|..++..+|...
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tN-V------------------------------qegeaggitqqIgAt~fp~~ 520 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTN-V------------------------------QEGEAGGITQQIGATYFPAE 520 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccc-c------------------------------ccccccceeeeccccccchH
Confidence 4456789999999999999998884211 0 22234677877777666543
Q ss_pred ------------------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCC
Q 010985 142 ------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 203 (496)
Q Consensus 142 ------------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~ 203 (496)
--.+.+||||||+.|.+..-+|.+.||++|||||...| +.+||.+.+.+++..+.
T Consensus 521 ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG-------lepqtiESi~lLR~rkt 593 (1064)
T KOG1144|consen 521 NIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG-------LEPQTIESINLLRMRKT 593 (1064)
T ss_pred HHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhcc-------CCcchhHHHHHHHhcCC
Confidence 12378999999999999999999999999999999999 45899999999999999
Q ss_pred ceEEEEEeeccCCCCCccH------------------HHHHHHHHHHHHHHHhcCCCc---------cCCeeEEeecccc
Q 010985 204 TKLLLVVNKMDDHTVNWSK------------------ERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLM 256 (496)
Q Consensus 204 ~~~ivviNK~D~~~~~~~~------------------~~~~~i~~~l~~~l~~~~~~~---------~~~~~~ipiSa~~ 256 (496)
| |||++||+|+. -+|-. ..|+.-.+.+...+...|++. ..-+.++|+||.+
T Consensus 594 p-FivALNKiDRL-Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~s 671 (1064)
T KOG1144|consen 594 P-FIVALNKIDRL-YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAIS 671 (1064)
T ss_pred C-eEEeehhhhhh-cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccccc
Confidence 9 99999999973 33322 112222222222233344431 2346789999999
Q ss_pred ccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEE--EccCCeEEEEEEEEeeeecCCEEEEecCC---
Q 010985 257 GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK--FKDMGTVVMGKVESGSVREGDSLLVMPNK--- 331 (496)
Q Consensus 257 g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~--~~~~G~v~~g~v~~G~l~~g~~v~~~p~~--- 331 (496)
|+||..|+.. |.+.-...-...-.....++..|.++ ..|.|+.+-..+..|.|+.||.|.++..+
T Consensus 672 GeGipdLl~l----------lv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpI 741 (1064)
T KOG1144|consen 672 GEGIPDLLLL----------LVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPI 741 (1064)
T ss_pred CCCcHHHHHH----------HHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCch
Confidence 9999886321 21111110000111234466667665 47999999999999999999999988655
Q ss_pred -------------ceEEEEEEEEcCc-------------cccccCCCCeEEEE
Q 010985 332 -------------AQVKVLAIYCDDN-------------RVRHAGPGENLRIR 358 (496)
Q Consensus 332 -------------~~~~V~sI~~~~~-------------~v~~a~aG~~v~~~ 358 (496)
+..+|++=++||+ .++.|.||..+-+.
T Consensus 742 vTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~Vv 794 (1064)
T KOG1144|consen 742 VTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVV 794 (1064)
T ss_pred hHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEEe
Confidence 3567888888764 44556777777653
No 86
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=1.6e-22 Score=208.65 Aligned_cols=199 Identities=19% Similarity=0.223 Sum_probs=143.4
Q ss_pred chhhhcccccccccccCCCCCCCCCCCcchhcccchhhhhhhcchhhhccccccccccCCcceeEEEEEecCCCChHHHH
Q 010985 3 IEEDIRSLQLDSAEENNGVVNPGDARPEEVEVVDKMEEVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTG 82 (496)
Q Consensus 3 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~ 82 (496)
.+..||+.++...+..|+.+||+|++ ++. ......+....++++.++... ..+..+++++|+++|++|+|||||+
T Consensus 146 ~~~~~r~~l~~~~a~iea~iDf~ee~-~~~---~~~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLi 220 (442)
T TIGR00450 146 KIEAIRKSLLQLLAQVEVNIDYEEDD-DEQ---DSLNQLLLSIIAELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLL 220 (442)
T ss_pred HHHHHHHHHHHHHHHeeEECCcCCCC-ccH---HHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHH
Confidence 47899999999999999999999864 222 244445666777777777766 4577788999999999999999999
Q ss_pred HHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEEEeCCCCcccH-----
Q 010985 83 GQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYV----- 157 (496)
Q Consensus 83 ~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDtpG~~~~~----- 157 (496)
|+|+.....+.. ..+|+|+|.....+.+++..+.++||||++++.
T Consensus 221 N~L~~~~~aivs------------------------------~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~ 270 (442)
T TIGR00450 221 NALLKQDRAIVS------------------------------DIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVER 270 (442)
T ss_pred HHHhCCCCcccC------------------------------CCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHH
Confidence 999743332222 138999999988999999999999999986652
Q ss_pred ---hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHH
Q 010985 158 ---PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTP 234 (496)
Q Consensus 158 ---~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~ 234 (496)
..+...+..+|++|+|+|++.+.. .... .+..+...+.| +|+|+||+|+... + .++
T Consensus 271 ~gi~~~~~~~~~aD~il~V~D~s~~~s-------~~~~-~l~~~~~~~~p-iIlV~NK~Dl~~~--~---~~~------- 329 (442)
T TIGR00450 271 LGIEKSFKAIKQADLVIYVLDASQPLT-------KDDF-LIIDLNKSKKP-FILVLNKIDLKIN--S---LEF------- 329 (442)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCC-------hhHH-HHHHHhhCCCC-EEEEEECccCCCc--c---hhh-------
Confidence 234556789999999999987631 1111 23333334677 8999999998322 1 111
Q ss_pred HHHhcCCCccCCeeEEeecccccccccccc
Q 010985 235 FLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 235 ~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+.+.. ..+++++||++ .|+.++.
T Consensus 330 ~~~~~------~~~~~~vSak~-~gI~~~~ 352 (442)
T TIGR00450 330 FVSSK------VLNSSNLSAKQ-LKIKALV 352 (442)
T ss_pred hhhhc------CCceEEEEEec-CCHHHHH
Confidence 11222 24688999998 4776643
No 87
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=6e-22 Score=197.20 Aligned_cols=146 Identities=21% Similarity=0.254 Sum_probs=119.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
+.|+|+|.||+|||||+|+|+.+.-+|.++. +|+|+|..+...+|.++.|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~------------------------------pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT------------------------------PGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC------------------------------CCCccCCccceeEEcCceE
Confidence 6799999999999999999987777776655 9999999999999999999
Q ss_pred EEEeCCCCcc-----c----HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 010985 146 TILDAPGHKS-----Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 146 ~liDtpG~~~-----~----~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~ 216 (496)
.+|||+|..+ + ..++..++..||++|||||+..|.+ ++..+....++..+.| +|+|+||+|-.
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git-------~~D~~ia~~Lr~~~kp-viLvvNK~D~~ 125 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT-------PADEEIAKILRRSKKP-VILVVNKIDNL 125 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEcccCc
Confidence 9999999763 2 4455667889999999999999965 5788888888877778 99999999972
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 217 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. +.....+.++|+. ..+||||.+|.|+.+|.+
T Consensus 126 ~~-----------e~~~~efyslG~g-----~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 126 KA-----------EELAYEFYSLGFG-----EPVPISAEHGRGIGDLLD 158 (444)
T ss_pred hh-----------hhhHHHHHhcCCC-----CceEeehhhccCHHHHHH
Confidence 11 1112234556765 579999999999998643
No 88
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=7e-21 Score=196.60 Aligned_cols=177 Identities=21% Similarity=0.352 Sum_probs=139.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
......||+++.|+|||||||...|+...|.|.++-..+ -..||+.++|..||+|..........
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagk---------------irfld~redeq~rgitmkss~is~~~ 69 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGK---------------IRFLDTREDEQTRGITMKSSAISLLH 69 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccc---------------eeeccccchhhhhceeeecccccccc
Confidence 345678999999999999999999999999887765322 24589999999999999999888888
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC-
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN- 219 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~- 219 (496)
+++.++|||+|||-||-...-++.+.+|.++++||+.+|++ .||...++.+-.-|.+ .|+|+||||+.-.+
T Consensus 70 ~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~-------~qt~~vlrq~~~~~~~-~~lvinkidrl~~el 141 (887)
T KOG0467|consen 70 KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVC-------SQTYAVLRQAWIEGLK-PILVINKIDRLITEL 141 (887)
T ss_pred CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccc-------hhHHHHHHHHHHccCc-eEEEEehhhhHHHHH
Confidence 99999999999999999999999999999999999999987 7999999988888887 78999999942111
Q ss_pred --ccHHHHHHH---HHHHHHHHH-------------------hcCCCccCCeeEEeeccccccccc
Q 010985 220 --WSKERYDEI---ESKMTPFLK-------------------ASGYNVKKDVQFLPISGLMGLNMK 261 (496)
Q Consensus 220 --~~~~~~~~i---~~~l~~~l~-------------------~~~~~~~~~~~~ipiSa~~g~gi~ 261 (496)
.+++.+..+ .++++..+. ..-|.+. +-.++..||..|+|+.
T Consensus 142 ~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~-kgNVif~~A~~~~~f~ 206 (887)
T KOG0467|consen 142 KLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPE-DGNVIFASALDGWGFG 206 (887)
T ss_pred hcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCC-CCcEEEEEeccccccc
Confidence 234444443 333333333 1223332 2357889999999874
No 89
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.3e-22 Score=201.41 Aligned_cols=215 Identities=14% Similarity=0.152 Sum_probs=156.5
Q ss_pred hhcccccccccccCCCCCCCCCCCcchhcccchhhhhhhcchhhhccccccccccCCcceeEEEEEecCCCChHHHHHHH
Q 010985 6 DIRSLQLDSAEENNGVVNPGDARPEEVEVVDKMEEVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQI 85 (496)
Q Consensus 6 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~~~L 85 (496)
.||..++...+..++.+||.++.+-++....++.....++++++..++...+..+..+.+++|+|+|+||+|||||+|+|
T Consensus 209 ~~r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL 288 (531)
T KOG1191|consen 209 GWRKILIEALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNAL 288 (531)
T ss_pred hHHHHHHHHHhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHH
Confidence 49999999999999999999986644444333333445567788888888888889999999999999999999999999
Q ss_pred HHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEEEeCCCCccc---------
Q 010985 86 LFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY--------- 156 (496)
Q Consensus 86 l~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDtpG~~~~--------- 156 (496)
+...-.|.+.. +|+|+|.....++.+|+++.|+||+|.++-
T Consensus 289 ~~~drsIVSpv------------------------------~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~g 338 (531)
T KOG1191|consen 289 SREDRSIVSPV------------------------------PGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALG 338 (531)
T ss_pred hcCCceEeCCC------------------------------CCcchhhheeEeecCCeEEEEEeccccccccCChhHHHh
Confidence 87766666554 999999999999999999999999998872
Q ss_pred HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC-----C------ceEEEEEeeccCCCCCccHHHH
Q 010985 157 VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-----V------TKLLLVVNKMDDHTVNWSKERY 225 (496)
Q Consensus 157 ~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~-----~------~~~ivviNK~D~~~~~~~~~~~ 225 (496)
+..+...+..||++++||||....++ +.......+...+ . .++|+++||+|+... +++
T Consensus 339 I~rA~k~~~~advi~~vvda~~~~t~-------sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~-~~~--- 407 (531)
T KOG1191|consen 339 IERARKRIERADVILLVVDAEESDTE-------SDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK-IPE--- 407 (531)
T ss_pred HHHHHHHHhhcCEEEEEecccccccc-------cchHHHHHHHHhccceEEEeccccccceEEEechhhccCc-ccc---
Confidence 66777778999999999999876543 2222223333221 1 458899999998422 111
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeE-Eeecccccccccccccc
Q 010985 226 DEIESKMTPFLKASGYNVKKDVQF-LPISGLMGLNMKTRVDK 266 (496)
Q Consensus 226 ~~i~~~l~~~l~~~~~~~~~~~~~-ipiSa~~g~gi~~l~~~ 266 (496)
+......+....|-. ..++ ..+|+++++|+..|+..
T Consensus 408 --~~~~~~~~~~~~~~~---~~~i~~~vs~~tkeg~~~L~~a 444 (531)
T KOG1191|consen 408 --MTKIPVVYPSAEGRS---VFPIVVEVSCTTKEGCERLSTA 444 (531)
T ss_pred --ccCCceeccccccCc---ccceEEEeeechhhhHHHHHHH
Confidence 111000111111111 2344 44999999999987653
No 90
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.86 E-value=1.3e-21 Score=162.39 Aligned_cols=102 Identities=33% Similarity=0.624 Sum_probs=96.2
Q ss_pred cccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEe
Q 010985 382 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICT 460 (496)
Q Consensus 382 ~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~ 460 (496)
.+.+|+|++.| +++ .++.+||++.+|+|+.+++|+|.+|.+++|.++++..+++|++|++|+.+.|+|++++|+|+
T Consensus 2 ~~~~f~A~v~~---l~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~ 78 (104)
T cd03705 2 VAESFTAQVIV---LNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVV 78 (104)
T ss_pred cccEEEEEEEE---ECCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEE
Confidence 36889999999 455 78999999999999999999999999999999998777789999999999999999999999
Q ss_pred eeccCcCccceEEEEeCCcEEEEEEE
Q 010985 461 EKFADFAQLGRFTLRTEGKTVAVGKV 486 (496)
Q Consensus 461 e~~~~~~~lgrfilr~~g~tva~G~V 486 (496)
|+|.+++.+|||+|||+|.|+|+|+|
T Consensus 79 e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 79 ETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99999999999999999999999986
No 91
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.86 E-value=1e-21 Score=172.85 Aligned_cols=144 Identities=21% Similarity=0.268 Sum_probs=98.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|.||+|||||+|+|++.. ....+ -+|+|++.....+.+.+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~---------------------~~v~n----------~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK---------------------QKVGN----------WPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS---------------------EEEEE----------STTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---------------------ceecC----------CCCCCeeeeeEEEEecCceE
Confidence 589999999999999999996332 11122 29999999999999999999
Q ss_pred EEEeCCCCccc----HhHH--hhc--cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 010985 146 TILDAPGHKSY----VPNM--ISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 146 ~liDtpG~~~~----~~~~--~~~--~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~ 217 (496)
.|+|+||.-++ ..+. ... ...+|++++|+||+.. .+....+..+..+|+| +|+|+||+|...
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---------~r~l~l~~ql~e~g~P-~vvvlN~~D~a~ 119 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---------ERNLYLTLQLLELGIP-VVVVLNKMDEAE 119 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---------HHHHHHHHHHHHTTSS-EEEEEETHHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---------HHHHHHHHHHHHcCCC-EEEEEeCHHHHH
Confidence 99999994333 1111 112 2589999999999863 2445555667778999 999999999832
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
..--.-. .+.+.+.+ .+|++|+||.+|.|++++
T Consensus 120 ~~g~~id----~~~Ls~~L---------g~pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 120 RKGIEID----AEKLSERL---------GVPVIPVSARTGEGIDEL 152 (156)
T ss_dssp HTTEEE-----HHHHHHHH---------TS-EEEEBTTTTBTHHHH
T ss_pred HcCCEEC----HHHHHHHh---------CCCEEEEEeCCCcCHHHH
Confidence 1100001 12222222 368999999999999985
No 92
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=6.8e-21 Score=175.28 Aligned_cols=170 Identities=31% Similarity=0.524 Sum_probs=130.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|.+|+|||||+|+|+........... .....++....+..+|+|++.....+++.+..++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGT---------------VEETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCc---------------eecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 5899999999999999999866554322110 1113455566777899999988888888899999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 226 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~ 226 (496)
|+||||+.+|...+...+..+|++++|+|+..+.. .+..+.+..+...+.| +++|+||+|+.. ++.+.
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~-i~iv~nK~D~~~----~~~~~ 133 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQ-------PQTREHLRIAREGGLP-IIVAINKIDRVG----EEDLE 133 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCc-------HHHHHHHHHHHHCCCC-eEEEEECCCCcc----hhcHH
Confidence 99999999998888888999999999999988742 4566777777766777 999999999942 33455
Q ss_pred HHHHHHHHHHHhcCCC--------ccCCeeEEeeccccccccccc
Q 010985 227 EIESKMTPFLKASGYN--------VKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 227 ~i~~~l~~~l~~~~~~--------~~~~~~~ipiSa~~g~gi~~l 263 (496)
...+++.+.++..+.. .....+++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l 178 (189)
T cd00881 134 EVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL 178 (189)
T ss_pred HHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHH
Confidence 5666677777665531 012578999999999999985
No 93
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=3.3e-21 Score=182.10 Aligned_cols=152 Identities=23% Similarity=0.241 Sum_probs=114.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.--|+|+|.||+|||||+|+|++..-+|.++. +.+|+.....-+..+..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k------------------------------~QTTR~~I~GI~t~~~~ 54 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPK------------------------------PQTTRNRIRGIVTTDNA 54 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCC------------------------------cchhhhheeEEEEcCCc
Confidence 445789999999999999999998777776654 77999999988999999
Q ss_pred EEEEEeCCCCcc--------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 144 RFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 144 ~i~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
++.|+||||... ..+.+..++..+|++++|||+.++. ....+..+..++..+.| +|+++||+|.
T Consensus 55 QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~-------~~~d~~il~~lk~~~~p-vil~iNKID~ 126 (298)
T COG1159 55 QIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGW-------GPGDEFILEQLKKTKTP-VILVVNKIDK 126 (298)
T ss_pred eEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccC-------CccHHHHHHHHhhcCCC-eEEEEEcccc
Confidence 999999999321 1555667788999999999999873 24556666677666678 8899999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
... +.....+.+ .+-....|. .++|+||++|.|++.|.
T Consensus 127 ~~~---~~~l~~~~~---~~~~~~~f~-----~ivpiSA~~g~n~~~L~ 164 (298)
T COG1159 127 VKP---KTVLLKLIA---FLKKLLPFK-----EIVPISALKGDNVDTLL 164 (298)
T ss_pred CCc---HHHHHHHHH---HHHhhCCcc-----eEEEeeccccCCHHHHH
Confidence 322 111222222 222233332 68999999999999854
No 94
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.6e-20 Score=196.03 Aligned_cols=157 Identities=24% Similarity=0.319 Sum_probs=122.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+|+|++....+. ...+|+|++.....+.+.
T Consensus 170 ~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~ 219 (435)
T PRK00093 170 EDEPIKIAIIGRPNVGKSSLINALLGEERVIV------------------------------SDIAGTTRDSIDTPFERD 219 (435)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCceEEEEEEEEEEC
Confidence 34579999999999999999999975432221 224899999998888889
Q ss_pred CeEEEEEeCCCCccc-----------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 010985 142 TTRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 210 (496)
Q Consensus 142 ~~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivvi 210 (496)
+..+.|+||||+++. ...+++++..+|++|+|+|+..+.. .+....+..+...+.| +|+|+
T Consensus 220 ~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~-------~~~~~i~~~~~~~~~~-~ivv~ 291 (435)
T PRK00093 220 GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLALEAGRA-LVIVV 291 (435)
T ss_pred CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCc-EEEEE
Confidence 999999999997542 2345667889999999999998853 4677777777777888 89999
Q ss_pred eeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 211 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 211 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
||+|+. +.+..+++.+++...+.... ..|++++||++|.|+.++.+
T Consensus 292 NK~Dl~----~~~~~~~~~~~~~~~l~~~~-----~~~i~~~SA~~~~gv~~l~~ 337 (435)
T PRK00093 292 NKWDLV----DEKTMEEFKKELRRRLPFLD-----YAPIVFISALTGQGVDKLLE 337 (435)
T ss_pred ECccCC----CHHHHHHHHHHHHHhccccc-----CCCEEEEeCCCCCCHHHHHH
Confidence 999983 34455666666666655443 35899999999999998764
No 95
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.83 E-value=3.1e-20 Score=181.08 Aligned_cols=164 Identities=22% Similarity=0.333 Sum_probs=127.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
||+++||+|+|||||+++|++..|.+... |... ...+++|..++++.+|+|+......++++++.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~------------g~v~-~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRL------------GSVE-DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccC------------Ceec-CCcccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 68999999999999999999887765432 1111 2357789999999999999999999999999999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 226 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~ 226 (496)
|+|||||.+|...+..++..+|++++|+|++.+.. .++...+..+...++| +++++||+|+...+ ++
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~-------~~~~~~~~~~~~~~~p-~iivvNK~D~~~~~-----~~ 134 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSGVE-------VGTEKLWEFADEAGIP-RIIFINKMDRERAD-----FD 134 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCccCCCC-----HH
Confidence 99999999999999999999999999999998853 5778888888889999 67899999985432 34
Q ss_pred HHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 227 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 227 ~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+..++++..+.. .+-.+.+...+|.|+..+
T Consensus 135 ~~~~~l~~~~~~-------~~~~~~ip~~~~~~~~~~ 164 (268)
T cd04170 135 KTLAALQEAFGR-------PVVPLQLPIGEGDDFKGV 164 (268)
T ss_pred HHHHHHHHHhCC-------CeEEEEecccCCCceeEE
Confidence 455555554421 111233445667766544
No 96
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.83 E-value=4.1e-20 Score=152.95 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=92.0
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEee
Q 010985 382 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 461 (496)
Q Consensus 382 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 461 (496)
.+..|+|+++|++ +.++.+||.+.+|+|+.+.+|+|.+|.+++|++|++. .+|++|+.|+.|.|+|++++|+|+|
T Consensus 2 ~~~~f~a~i~~l~---~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~--~~~~~l~~n~~a~v~i~~~~pi~~d 76 (103)
T cd04095 2 VSDQFAATLVWMD---EEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEH--EAADTLELNDIGRVELSLSKPLAFD 76 (103)
T ss_pred ccceeeEEEEEec---CcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCc--cCCCEECCCCeEEEEEEeCCccEec
Confidence 4678999999954 5589999999999999999999999999999999873 4899999999999999999999999
Q ss_pred eccCcCccceEEEEe--CCcEEEEEEE
Q 010985 462 KFADFAQLGRFTLRT--EGKTVAVGKV 486 (496)
Q Consensus 462 ~~~~~~~lgrfilr~--~g~tva~G~V 486 (496)
+|.+++.+|||+|+| +|.|+|+|+|
T Consensus 77 ~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 77 PYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred chhhCCCcceEEEEECCCCcEEEEEeC
Confidence 999999999999955 5999999986
No 97
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.83 E-value=8.9e-20 Score=149.37 Aligned_cols=98 Identities=42% Similarity=0.711 Sum_probs=86.5
Q ss_pred CcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceE
Q 010985 379 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 458 (496)
Q Consensus 379 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi 458 (496)
|++++++|+|++.+|+. ..+|..||++++|+|+.+++|++.+|.+++| +|+.. |++|++|+.|.|+|++++|+
T Consensus 1 ~~k~~~~f~A~v~vl~~--~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi 73 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDH--PKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPI 73 (99)
T ss_dssp SSEEEEEEEEEEEESSG--SS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEEEcC--CccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccce
Confidence 46789999999999553 4899999999999999999999999999998 54433 99999999999999999999
Q ss_pred EeeeccCcCccceEEEEeCCcEEEEEEEEEc
Q 010985 459 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 489 (496)
Q Consensus 459 ~~e~~~~~~~lgrfilr~~g~tva~G~V~~v 489 (496)
|+|+|. ||+||++|+|+|+|+|++|
T Consensus 74 ~ve~~~------Rf~lR~~~~Tia~G~V~~v 98 (99)
T PF03143_consen 74 CVEPFS------RFILRDGGKTIAVGVVTKV 98 (99)
T ss_dssp EETTTT------EEEEEETTEEEEEEEEEEE
T ss_pred eeecCc------eEEEccCCeEEEEEEEEEe
Confidence 999985 9999999999999999987
No 98
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=6.3e-20 Score=191.25 Aligned_cols=158 Identities=23% Similarity=0.281 Sum_probs=122.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+|+|+.....+. ...+|+|++.....+..+
T Consensus 169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~ 218 (429)
T TIGR03594 169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIV------------------------------SDIAGTTRDSIDIPFERN 218 (429)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHCCCeeec------------------------------CCCCCceECcEeEEEEEC
Confidence 34568999999999999999999974332211 224899999988888889
Q ss_pred CeEEEEEeCCCCcccH-----------hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 010985 142 TTRFTILDAPGHKSYV-----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 210 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~-----------~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivvi 210 (496)
+..+.|+||||++++. ..+..++..||++|+|+|+..+.. .++.+.+..+...+.| +|+|+
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~ 290 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT-------EQDLRIAGLILEAGKA-LVIVV 290 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEE
Confidence 9999999999986542 234567789999999999998854 4666777777777888 89999
Q ss_pred eeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 211 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 211 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
||+|+. + +.+.++++.+.+...+...+ .++++++||++|.|+.++.+
T Consensus 291 NK~Dl~--~-~~~~~~~~~~~~~~~~~~~~-----~~~vi~~SA~~g~~v~~l~~ 337 (429)
T TIGR03594 291 NKWDLV--K-DEKTREEFKKELRRKLPFLD-----FAPIVFISALTGQGVDKLLD 337 (429)
T ss_pred ECcccC--C-CHHHHHHHHHHHHHhcccCC-----CCceEEEeCCCCCCHHHHHH
Confidence 999994 1 45566677777776665443 35899999999999998754
No 99
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=1.7e-19 Score=162.84 Aligned_cols=154 Identities=31% Similarity=0.426 Sum_probs=110.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC---Ce
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---TT 143 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~ 143 (496)
.|+++|++|+|||||+++|+... . .....+++|.+.....+... +.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~--~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 50 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN--V-----------------------------AAGEAGGITQHIGAFEVPAEVLKIP 50 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc--c-----------------------------ccccCCCeEEeeccEEEecccCCcc
Confidence 58999999999999999995211 1 11123577887776777664 78
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHH
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.++|+||||+..|...+..++..+|++++|+|++.+.. .++.+.+..+...++| +++|+||+|+... ..+
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~--~~~ 120 (168)
T cd01887 51 GITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVM-------PQTIEAIKLAKAANVP-FIVALNKIDKPNA--NPE 120 (168)
T ss_pred eEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEEceecccc--cHH
Confidence 99999999999988877778899999999999998642 4677777788888888 8899999998422 222
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 224 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 224 ~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+.+....+..... ..+ ...++++++|+++|.|+.++.
T Consensus 121 ~~~~~~~~~~~~~~-~~~--~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 121 RVKNELSELGLQGE-DEW--GGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred HHHHHHHHhhcccc-ccc--cCcCcEEEeecccCCCHHHHH
Confidence 22222221111110 011 124689999999999999853
No 100
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.82 E-value=3e-20 Score=186.59 Aligned_cols=171 Identities=19% Similarity=0.205 Sum_probs=112.0
Q ss_pred hhhhhhhcchhhhccccccccccCCc---ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhh
Q 010985 38 MEEVKHKEVSAVEDAESQQETEGNNK---RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYM 114 (496)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~ 114 (496)
+..++..+.++++........++..+ ..++|+++|++|+|||||+|+|+... .+
T Consensus 159 i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~---------------------- 215 (351)
T TIGR03156 159 IRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VY---------------------- 215 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-ee----------------------
Confidence 44455566666666555554444333 56999999999999999999996321 11
Q ss_pred hhhcCCchhhhhcccEEeeeeEEEEe-CCeEEEEEeCCCC-ccc-------HhHHhhccccCCEEEEEEeCCCCcccccc
Q 010985 115 AYIMDTNEEERIKGKTVEVGRAHFET-ETTRFTILDAPGH-KSY-------VPNMISGASQADIGVLVISARKGEFETGF 185 (496)
Q Consensus 115 ~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~i~liDtpG~-~~~-------~~~~~~~~~~aD~~ilVvda~~g~~e~~~ 185 (496)
.....++|+|.....+.+ ++..+.|+||||. ++. ++.+...+..||++|+|+|++.+...
T Consensus 216 --------v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~--- 284 (351)
T TIGR03156 216 --------AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE--- 284 (351)
T ss_pred --------eccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH---
Confidence 111267888888888887 5789999999997 321 33445567899999999999876321
Q ss_pred CCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccc
Q 010985 186 EKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 262 (496)
Q Consensus 186 ~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~ 262 (496)
.+.......+..+ +.| +|+|+||+|+.. ...... ... + ..+++++||++|.|+++
T Consensus 285 ---~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~----~~~v~~-------~~~--~-----~~~~i~iSAktg~GI~e 342 (351)
T TIGR03156 285 ---EQIEAVEKVLEELGAEDIP-QLLVYNKIDLLD----EPRIER-------LEE--G-----YPEAVFVSAKTGEGLDL 342 (351)
T ss_pred ---HHHHHHHHHHHHhccCCCC-EEEEEEeecCCC----hHhHHH-------HHh--C-----CCCEEEEEccCCCCHHH
Confidence 1111112334443 456 899999999832 111111 111 1 13589999999999998
Q ss_pred cc
Q 010985 263 RV 264 (496)
Q Consensus 263 l~ 264 (496)
+.
T Consensus 343 L~ 344 (351)
T TIGR03156 343 LL 344 (351)
T ss_pred HH
Confidence 53
No 101
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.82 E-value=3.1e-19 Score=174.16 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=102.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|++|+|||||+|+|++..-.+.+ ..+++|++.........+.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs------------------------------~~~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS------------------------------PKAQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC------------------------------CCCCcccCcEEEEEEcCCcEEE
Confidence 6899999999999999999743222211 2367888766555566678899
Q ss_pred EEeCCCCccc--------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 147 ILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 147 liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
|+||||+.+. .+.+..++..+|++++|+|++.+.. .....+..+...+.| +++|+||+|+.
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--------~~~~i~~~l~~~~~p-~ilV~NK~Dl~-- 120 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--------DGEFVLTKLQNLKRP-VVLTRNKLDNK-- 120 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------hHHHHHHHHHhcCCC-EEEEEECeeCC--
Confidence 9999996542 3345566789999999999987631 224445566667788 88999999983
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+ .+. +...+..+....++ .+++|+||++|.|++++.+
T Consensus 121 ~--~~~---~~~~~~~~~~~~~~-----~~v~~iSA~~g~gi~~L~~ 157 (270)
T TIGR00436 121 F--KDK---LLPLIDKYAILEDF-----KDIVPISALTGDNTSFLAA 157 (270)
T ss_pred C--HHH---HHHHHHHHHhhcCC-----CceEEEecCCCCCHHHHHH
Confidence 2 222 22233333333332 2689999999999998643
No 102
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=1.3e-18 Score=157.45 Aligned_cols=154 Identities=24% Similarity=0.286 Sum_probs=108.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
.++|+++|++|+|||||+++|+.....+ ....+++|++.....+..++..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI------------------------------VSDIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee------------------------------ccCCCCCccCceeeEEEECCee
Confidence 5789999999999999999996332111 1113677777777777888889
Q ss_pred EEEEeCCCCccc-----------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 010985 145 FTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 213 (496)
Q Consensus 145 i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~ 213 (496)
+.++||||+.+. ...+...+..+|++++|+|+..+.. .+....+..+...+.| +++++||+
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~ 123 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLILEEGKA-LVIVVNKW 123 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcc-------hhHHHHHHHHHhcCCC-EEEEEecc
Confidence 999999997543 1234456679999999999988743 2344445555556777 88999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 214 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 214 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
|+.. ......+.+.+.+...+...+ ..+++++||++|.|+.++
T Consensus 124 Dl~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~ 166 (174)
T cd01895 124 DLVE--KDSKTMKEFKKEIRRKLPFLD-----YAPIVFISALTGQGVDKL 166 (174)
T ss_pred ccCC--ccHHHHHHHHHHHHhhccccc-----CCceEEEeccCCCCHHHH
Confidence 9832 222345555555555443322 357999999999999884
No 103
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.80 E-value=6.9e-19 Score=158.86 Aligned_cols=156 Identities=23% Similarity=0.255 Sum_probs=102.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
||+++|++|+|||||+++|........ + ........|+......+.+.+..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~--------------~-------------~~~~~~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYK--------------G-------------LPPSKITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhccccc--------------C-------------CcccccCCccccceEEEEECCEEEE
Confidence 589999999999999999964322100 0 0001134555555566777889999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCCccH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~----~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
++||||+.+|...+...+..+|++++|+|+..... + ......+..+. ..++| +++++||+|+... ..
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~-~~- 124 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRER---F---EESKSALEKVLRNEALEGVP-LLILANKQDLPDA-LS- 124 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEEccccccC-CC-
Confidence 99999999998888888899999999999986421 0 01122222221 23677 8999999998432 12
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 223 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
..++.+.+.......+. ..++++++||++|.|++++
T Consensus 125 --~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 125 --VEEIKEVFQDKAEEIGR---RDCLVLPVSALEGTGVREG 160 (167)
T ss_pred --HHHHHHHhccccccccC---CceEEEEeeCCCCcCHHHH
Confidence 22333333333322222 2568999999999999874
No 104
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=8.8e-19 Score=183.92 Aligned_cols=155 Identities=20% Similarity=0.228 Sum_probs=112.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
..++|+++|++|+|||||+|+|+.....+ ....+|+|+|.....+++++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------------------------~s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------------------------VDDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCccCCcceEEEEECCE
Confidence 56999999999999999999996332111 122488999998888889999
Q ss_pred EEEEEeCCCCcc---------cHhH--HhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 010985 144 RFTILDAPGHKS---------YVPN--MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 212 (496)
Q Consensus 144 ~i~liDtpG~~~---------~~~~--~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK 212 (496)
.+.|+||||.++ +... +...+..||++|+|+|++.+.. .+....+..+...+.| +|+|+||
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s-------~~~~~~~~~~~~~~~p-iIiV~NK 331 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS-------EQDQRVLSMVIEAGRA-LVLAFNK 331 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEC
Confidence 999999999642 2222 2345679999999999998743 3455556666667888 8999999
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 213 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 213 ~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+|+.. .+....+..++...+.... ..+++++||++|.|++++..
T Consensus 332 ~Dl~~----~~~~~~~~~~i~~~l~~~~-----~~~~~~~SAk~g~gv~~lf~ 375 (472)
T PRK03003 332 WDLVD----EDRRYYLEREIDRELAQVP-----WAPRVNISAKTGRAVDKLVP 375 (472)
T ss_pred cccCC----hhHHHHHHHHHHHhcccCC-----CCCEEEEECCCCCCHHHHHH
Confidence 99942 2223334444444444332 24789999999999998754
No 105
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=2e-18 Score=158.10 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=106.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
...+.++|+|+|++|+|||||+|+|+..... . .....+|.|.+......
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~~-- 62 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKL-A----------------------------RTSKTPGRTQLINFFEV-- 62 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c----------------------------cccCCCCcceEEEEEEe--
Confidence 4467789999999999999999999632100 0 00112567777654433
Q ss_pred CCeEEEEEeCCCCcc----------cH---hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 010985 141 ETTRFTILDAPGHKS----------YV---PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 207 (496)
Q Consensus 141 ~~~~i~liDtpG~~~----------~~---~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~i 207 (496)
+ ..+.|+||||+.. |. ...++....+|++++|+|++.+.. .+..+.+..+...+.| ++
T Consensus 63 ~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~-------~~~~~~~~~~~~~~~p-vi 133 (179)
T TIGR03598 63 N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK-------ELDLEMLEWLRERGIP-VL 133 (179)
T ss_pred C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EE
Confidence 2 3799999999632 22 122333346789999999988643 3555666777777888 88
Q ss_pred EEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccc
Q 010985 208 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 261 (496)
Q Consensus 208 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~ 261 (496)
+++||+|+. ..+..+...+++++.++..+. +.+++++||++|+|++
T Consensus 134 iv~nK~D~~----~~~~~~~~~~~i~~~l~~~~~----~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 134 IVLTKADKL----KKSELNKQLKKIKKALKKDAD----DPSVQLFSSLKKTGID 179 (179)
T ss_pred EEEECcccC----CHHHHHHHHHHHHHHHhhccC----CCceEEEECCCCCCCC
Confidence 999999983 244556667777777776542 3579999999999984
No 106
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=2.7e-18 Score=172.29 Aligned_cols=151 Identities=23% Similarity=0.274 Sum_probs=104.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+..+|+++|++|+|||||+|+|+...-.+. ...+++|++.....+..++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv------------------------------s~k~~tTr~~~~~~~~~~~ 99 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV------------------------------TPKVQTTRSIITGIITLKD 99 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeec------------------------------cCCCCCccCcEEEEEEeCC
Confidence 3557999999999999999999963322111 1236788887777788889
Q ss_pred eEEEEEeCCCCccc--------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 143 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 143 ~~i~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
.++.|+||||..+. .+....++..||++|+|+|+..+.. ......+..+...+.| .|+|+||+|
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~-------~~~~~il~~l~~~~~p-~IlViNKiD 171 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFD-------DITHNILDKLRSLNIV-PIFLLNKID 171 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEhhc
Confidence 99999999997432 3334455789999999999887521 2334455566667777 568999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+... ... ++...+...+ ...+++|+||++|.|++++.
T Consensus 172 l~~~-----~~~----~~~~~l~~~~----~~~~i~~iSAktg~gv~eL~ 208 (339)
T PRK15494 172 IESK-----YLN----DIKAFLTENH----PDSLLFPISALSGKNIDGLL 208 (339)
T ss_pred Cccc-----cHH----HHHHHHHhcC----CCcEEEEEeccCccCHHHHH
Confidence 8321 122 2333333321 12479999999999999853
No 107
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.78 E-value=2.2e-18 Score=142.60 Aligned_cols=101 Identities=32% Similarity=0.537 Sum_probs=92.0
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEee
Q 010985 382 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 461 (496)
Q Consensus 382 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 461 (496)
++++|+|++.+++. ..+|..||++.+|+++.+++|+|..|.+++|.++ ..+++|++|++|+.+.|+|++++|+|+|
T Consensus 2 ~~~~f~a~i~~l~~--~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~--~~~~~~~~l~~~~~a~v~l~~~~pi~~e 77 (102)
T cd01513 2 AVDKFVAEIYVLDH--PEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERGIVEVELQKPVALE 77 (102)
T ss_pred cccEEEEEEEEECC--CcccCCCCcEEEEeecCEEeEEEEeeeeecccCc--ccccCchhhcCCCEEEEEEEECCceEEE
Confidence 46899999988542 3789999999999999999999999999999874 3456789999999999999999999999
Q ss_pred eccCcCccceEEEEeCCcEEEEEEE
Q 010985 462 KFADFAQLGRFTLRTEGKTVAVGKV 486 (496)
Q Consensus 462 ~~~~~~~lgrfilr~~g~tva~G~V 486 (496)
+|.++|.+|||+||+.|+|+|+|+|
T Consensus 78 ~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 78 TFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EhhhCCCcccEEEEeCCCEEEEEEC
Confidence 9999999999999999999999986
No 108
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=2e-18 Score=179.96 Aligned_cols=144 Identities=21% Similarity=0.251 Sum_probs=109.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|++|+|||||+|+|+.....+. +..+|+|++.....+.+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v------------------------------~~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV------------------------------SDTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee------------------------------cCCCCcccCceEEEEEECCeEEE
Confidence 489999999999999999964332221 12378999999999999999999
Q ss_pred EEeCCCC--------cccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 147 ILDAPGH--------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 147 liDtpG~--------~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
|+||||+ ..+...+..++..||++++|+|+..+.. ....+.+..++..+.| +++|+||+|+...
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~-------~~d~~i~~~l~~~~~p-iilVvNK~D~~~~ 122 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLT-------PEDEEIAKWLRKSGKP-VILVANKIDGKKE 122 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHhCCC-EEEEEECccCCcc
Confidence 9999997 3345566777889999999999998743 4556677778778888 8999999998432
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+.. . . .+..+|+. +++++||.+|.|+.++.
T Consensus 123 ~~~---~----~----~~~~lg~~-----~~~~vSa~~g~gv~~ll 152 (429)
T TIGR03594 123 DAV---A----A----EFYSLGFG-----EPIPISAEHGRGIGDLL 152 (429)
T ss_pred ccc---H----H----HHHhcCCC-----CeEEEeCCcCCChHHHH
Confidence 210 1 1 12344543 58999999999998853
No 109
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=4.3e-18 Score=151.57 Aligned_cols=142 Identities=20% Similarity=0.225 Sum_probs=102.7
Q ss_pred EEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEEE
Q 010985 69 VFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTIL 148 (496)
Q Consensus 69 ~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~li 148 (496)
+++|++|+|||||+++|+..... ..+..+++|.+.........++.+.++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA------------------------------IVEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE------------------------------eecCCCCceeCceeEEEEECCeEEEEE
Confidence 58999999999999999632110 011236788888888888889999999
Q ss_pred eCCCCcccHh--------HHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 149 DAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 149 DtpG~~~~~~--------~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
||||+.++.. .....+..+|++++|+|+..+.. ....+.+..+...+.| +++|+||+|+...
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-------~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~-- 120 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLT-------PADEEIAKYLRKSKKP-VILVVNKVDNIKE-- 120 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCC-------ccHHHHHHHHHhcCCC-EEEEEECcccCCh--
Confidence 9999988643 44456788999999999987632 3445566777777877 8999999998422
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. . ...+...++. +++++|+++|.|++++.
T Consensus 121 ~~-~--------~~~~~~~~~~-----~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 121 ED-E--------AAEFYSLGFG-----EPIPISAEHGRGIGDLL 150 (157)
T ss_pred HH-H--------HHHHHhcCCC-----CeEEEecccCCCHHHHH
Confidence 11 1 1223333332 57999999999998853
No 110
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=7.9e-18 Score=176.73 Aligned_cols=148 Identities=24% Similarity=0.285 Sum_probs=107.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
..++|+|+|.+|+|||||+|+|+.....+ ....+|+|++.....+++.+.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------------------------v~~~~gvT~d~~~~~~~~~~~ 86 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAV------------------------------VEDVPGVTRDRVSYDAEWNGR 86 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccc------------------------------ccCCCCCCEeeEEEEEEECCc
Confidence 34799999999999999999996432211 122488999998888899999
Q ss_pred EEEEEeCCCCcc--------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 144 RFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 144 ~i~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
.+.|+||||+.. +...+..++..||++|+|+|++.+.. ....+.+..+...+.| +|+|+||+|+
T Consensus 87 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s-------~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 87 RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT-------ATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 999999999763 33445556789999999999998743 2344555666667888 9999999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.... .+ ... +...++. ..+++||++|.|+.++.+
T Consensus 159 ~~~~--~~--------~~~-~~~~g~~-----~~~~iSA~~g~gi~eL~~ 192 (472)
T PRK03003 159 ERGE--AD--------AAA-LWSLGLG-----EPHPVSALHGRGVGDLLD 192 (472)
T ss_pred Cccc--hh--------hHH-HHhcCCC-----CeEEEEcCCCCCcHHHHH
Confidence 4321 11 111 1233443 246999999999998643
No 111
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3.7e-17 Score=166.48 Aligned_cols=133 Identities=22% Similarity=0.252 Sum_probs=107.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
.....+||+++||-.||||+|+..|..++----+ +..-.-...+|....|++||.++......+-.
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~--------------~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l 189 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFS--------------KNTEADLRYTDTLFYEQERGCSIKSTPVTLVL 189 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecccccc--------------ccccccccccccchhhHhcCceEeecceEEEE
Confidence 3446789999999999999999999755431000 00001123478888999999999987766544
Q ss_pred -----CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 141 -----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 141 -----~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
..+.++|+|||||-+|..++..+++.+|++++|||+.+|++ -+|++.+..+.....+ +++|+||+|+
T Consensus 190 ~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVm-------lntEr~ikhaiq~~~~-i~vviNKiDR 261 (971)
T KOG0468|consen 190 SDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVM-------LNTERIIKHAIQNRLP-IVVVINKVDR 261 (971)
T ss_pred ecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCce-------eeHHHHHHHHHhccCc-EEEEEehhHH
Confidence 34779999999999999999999999999999999999987 4888888888888888 9999999996
No 112
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.75 E-value=5.4e-18 Score=151.30 Aligned_cols=141 Identities=21% Similarity=0.234 Sum_probs=97.0
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEEEe
Q 010985 70 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILD 149 (496)
Q Consensus 70 i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liD 149 (496)
++|++|+|||||+++|..... .....+|+|++.....+++.+..+.|+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-------------------------------KVGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-------------------------------cccCCCCcccccceEEEeeCCeEEEEEE
Confidence 589999999999999952210 0111378888888888888889999999
Q ss_pred CCCCcccHhH------Hhhcc--ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 150 APGHKSYVPN------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 150 tpG~~~~~~~------~~~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
|||+.+|... +...+ ..+|++++|+|+.... +....+..+...++| +++|+||+|+......
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---------~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~ 119 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE---------RNLYLTLQLLELGLP-VVVALNMIDEAEKRGI 119 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch---------hHHHHHHHHHHcCCC-EEEEEehhhhcccccc
Confidence 9999876432 22223 4899999999998642 333334455567888 8899999999433211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. .....+.+.+ ..+++++|+.+|.|+.++.
T Consensus 120 ~-------~~~~~~~~~~------~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 120 K-------IDLDKLSELL------GVPVVPTSARKGEGIDELK 149 (158)
T ss_pred h-------hhHHHHHHhh------CCCeEEEEccCCCCHHHHH
Confidence 1 1112222222 2468999999999998853
No 113
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=9.2e-18 Score=184.29 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=111.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
..++|+++|++|+|||||+|+|+.....+. ...+|+|++.....+.+++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v------------------------------~~~~gtT~d~~~~~~~~~~~ 498 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV------------------------------NDLAGTTRDPVDEIVEIDGE 498 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc------------------------------CCCCCCCcCcceeEEEECCC
Confidence 458999999999999999999974322111 12388999998888888999
Q ss_pred EEEEEeCCCCcc---------cHhH--HhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 010985 144 RFTILDAPGHKS---------YVPN--MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 212 (496)
Q Consensus 144 ~i~liDtpG~~~---------~~~~--~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK 212 (496)
.+.|+||||+++ |... ...++..+|++|+|+|++.+.. .+....+..+...+.| +|+|+||
T Consensus 499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s-------~~~~~i~~~~~~~~~p-iIiV~NK 570 (712)
T PRK09518 499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS-------EQDLKVMSMAVDAGRA-LVLVFNK 570 (712)
T ss_pred EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEc
Confidence 999999999642 2222 2345688999999999998843 3555666666667888 8999999
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 213 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 213 ~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+|+.. .+..+.+...+...+.... ..+++++||++|.|+.++.+
T Consensus 571 ~DL~~----~~~~~~~~~~~~~~l~~~~-----~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 571 WDLMD----EFRRQRLERLWKTEFDRVT-----WARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred hhcCC----hhHHHHHHHHHHHhccCCC-----CCCEEEEECCCCCCHHHHHH
Confidence 99932 2223333344443333222 34789999999999998755
No 114
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=4.1e-17 Score=161.25 Aligned_cols=152 Identities=19% Similarity=0.183 Sum_probs=102.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.-.|+++|+||||||||+|+|++..-.+.+ ..+++|++.....+..++.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs------------------------------~~~~tt~~~i~~i~~~~~~ 53 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVS------------------------------PKPQTTRHRIRGIVTEDDA 53 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecC------------------------------CCCCcccccEEEEEEcCCc
Confidence 3457999999999999999999743222111 1255666655555555668
Q ss_pred EEEEEeCCCCccc--------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 144 RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 144 ~i~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
.+.|+||||+.+. ...+..++..+|++++|+|++.+.. ....+.+..+...+.| +++|+||+|+
T Consensus 54 qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~-------~~~~~i~~~l~~~~~p-vilVlNKiDl 125 (292)
T PRK00089 54 QIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG-------PGDEFILEKLKKVKTP-VILVLNKIDL 125 (292)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------hhHHHHHHHHhhcCCC-EEEEEECCcC
Confidence 9999999996543 3445556789999999999988421 2445555666655777 8899999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. +.+...+..+.+. +..+ ..+++++||++|.|++++.
T Consensus 126 ~~---~~~~l~~~~~~l~---~~~~-----~~~i~~iSA~~~~gv~~L~ 163 (292)
T PRK00089 126 VK---DKEELLPLLEELS---ELMD-----FAEIVPISALKGDNVDELL 163 (292)
T ss_pred CC---CHHHHHHHHHHHH---hhCC-----CCeEEEecCCCCCCHHHHH
Confidence 31 2223333333332 2222 2478999999999999853
No 115
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.74 E-value=1.9e-17 Score=133.46 Aligned_cols=87 Identities=26% Similarity=0.495 Sum_probs=82.6
Q ss_pred CCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcce
Q 010985 292 NGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 369 (496)
Q Consensus 292 ~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~ 369 (496)
++||||+|+++| ++.|++++|+|++|+|+.||++.++|.+..++|++|++++.++++|.|||+|+|+|++++..++++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~ 81 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKR 81 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCC
Confidence 579999999999 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCC
Q 010985 370 GFVLSSVAK 378 (496)
Q Consensus 370 G~vl~~~~~ 378 (496)
|++|+++++
T Consensus 82 G~vl~~~~~ 90 (91)
T cd03693 82 GDVAGDSKN 90 (91)
T ss_pred cCEEccCCC
Confidence 999998754
No 116
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=4e-17 Score=145.19 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=99.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
+++|+++|++|+|||||+++|+....... ...+++|.+.....+...+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 50 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIV------------------------------SDIAGTTRDVIEESIDIGGIP 50 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEec------------------------------cCCCCCccceEEEEEEeCCEE
Confidence 46899999999999999999963221110 113678888777778888899
Q ss_pred EEEEeCCCCcccHh--------HHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeeccC
Q 010985 145 FTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDD 215 (496)
Q Consensus 145 i~liDtpG~~~~~~--------~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviNK~D~ 215 (496)
++++||||+.++.. .+...+..+|++++|+|++.. .+........ ..+.| +++|+||+|+
T Consensus 51 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~~~~~~~~~~~~~~~~-vi~v~nK~D~ 119 (157)
T cd04164 51 VRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRG----------LDEEDLEILELPADKP-IIVVLNKSDL 119 (157)
T ss_pred EEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CCHHHHHHHHhhcCCC-EEEEEEchhc
Confidence 99999999877632 344567799999999999975 3333444444 34556 8999999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.... . . ... ....+++++||+++.|+.++.
T Consensus 120 ~~~~--~--~---------~~~------~~~~~~~~~Sa~~~~~v~~l~ 149 (157)
T cd04164 120 LPDS--E--L---------LSL------LAGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred CCcc--c--c---------ccc------cCCCceEEEECCCCCCHHHHH
Confidence 4321 1 1 001 124579999999999999853
No 117
>PRK11058 GTPase HflX; Provisional
Probab=99.73 E-value=8.7e-18 Score=172.65 Aligned_cols=176 Identities=17% Similarity=0.118 Sum_probs=107.4
Q ss_pred hhhhhhcchhhhccccccccccCCc---ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhh
Q 010985 39 EEVKHKEVSAVEDAESQQETEGNNK---RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMA 115 (496)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~ 115 (496)
...+..+.++++........++..+ ..+.|+++|.+|+|||||+|+|+...-.
T Consensus 168 ~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~------------------------ 223 (426)
T PRK11058 168 RNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY------------------------ 223 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee------------------------
Confidence 3445555555555444433332222 3478999999999999999999532110
Q ss_pred hhcCCchhhhhcccEEeeeeEEEEeCCe-EEEEEeCCCCccc--------HhHHhhccccCCEEEEEEeCCCCccccccC
Q 010985 116 YIMDTNEEERIKGKTVEVGRAHFETETT-RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFE 186 (496)
Q Consensus 116 ~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~ 186 (496)
....+++|+|.....+.+.+. .+.|+||||.... +..++..+..||++|+|+|++.+.+.....
T Consensus 224 -------v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~ 296 (426)
T PRK11058 224 -------AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIE 296 (426)
T ss_pred -------eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHH
Confidence 111267888888777777664 8999999997332 334556678999999999998863210000
Q ss_pred CCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 187 KGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 187 ~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
...+.+..+...++| +|+|+||+|+... ....+ . . ...++ ..++++||++|.|++++.+
T Consensus 297 ---~v~~iL~el~~~~~p-vIiV~NKiDL~~~--~~~~~----~---~--~~~~~-----~~~v~ISAktG~GIdeL~e 355 (426)
T PRK11058 297 ---AVNTVLEEIDAHEIP-TLLVMNKIDMLDD--FEPRI----D---R--DEENK-----PIRVWLSAQTGAGIPLLFQ 355 (426)
T ss_pred ---HHHHHHHHhccCCCC-EEEEEEcccCCCc--hhHHH----H---H--HhcCC-----CceEEEeCCCCCCHHHHHH
Confidence 011222222223567 8899999998321 11111 0 0 01121 1258899999999998643
No 118
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=5e-17 Score=169.71 Aligned_cols=145 Identities=21% Similarity=0.229 Sum_probs=106.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|++|+|||||+|+|+.....+. ...+|+|++.....+.+.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v------------------------------~~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV------------------------------ADTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee------------------------------CCCCCCcccceEEEEEECCcEE
Confidence 5799999999999999999963322111 1137899999888899999999
Q ss_pred EEEeCCCCcc----c----HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 010985 146 TILDAPGHKS----Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 146 ~liDtpG~~~----~----~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~ 217 (496)
.|+||||+.+ + ...+..++..+|++|+|+|+..+.. ....+....+...+.| +|+|+||+|+..
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~-------~~~~~~~~~l~~~~~p-iilv~NK~D~~~ 123 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLT-------PADEEIAKILRKSNKP-VILVVNKVDGPD 123 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCc-EEEEEECccCcc
Confidence 9999999987 2 3334556789999999999998742 2445556677777888 899999999732
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. .+.. .++ ..+|+. .++++||.+|.|+.++.
T Consensus 124 ~---~~~~-------~~~-~~lg~~-----~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 124 E---EADA-------YEF-YSLGLG-----EPYPISAEHGRGIGDLL 154 (435)
T ss_pred c---hhhH-------HHH-HhcCCC-----CCEEEEeeCCCCHHHHH
Confidence 1 1111 111 233432 37899999999998853
No 119
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.72 E-value=2.8e-17 Score=148.67 Aligned_cols=148 Identities=18% Similarity=0.153 Sum_probs=94.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe-EE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT-RF 145 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i 145 (496)
+|+++|++|||||||+++|...... ....+++|++.....+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-------------------------------v~~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-------------------------------IADYPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-------------------------------ccCCCccccCCcceEEEcCCCCeE
Confidence 6899999999999999999521110 011245666666666666776 99
Q ss_pred EEEeCCCCc-------ccHhHHhhccccCCEEEEEEeCCCC-ccccccCCCCchHHHHHHHHH-----cCCceEEEEEee
Q 010985 146 TILDAPGHK-------SYVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNK 212 (496)
Q Consensus 146 ~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~~g-~~e~~~~~~~~t~e~~~~~~~-----~~~~~~ivviNK 212 (496)
.|+||||+. .+...+.+.+..+|++++|+|++.+ ... .+.......+.. .+.| +++|+||
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~------~~~~~~~~~l~~~~~~~~~~p-~ivv~NK 123 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPV------EDYKTIRNELELYNPELLEKP-RIVVLNK 123 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHH------HHHHHHHHHHHHhCccccccc-cEEEEEc
Confidence 999999974 2344455566789999999999876 110 011112222222 2456 7899999
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 213 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 213 ~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+|+.... ... ..+..++... ...+++++||++|.|+.++.
T Consensus 124 ~Dl~~~~----~~~---~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 163 (170)
T cd01898 124 IDLLDEE----ELF---ELLKELLKEL-----WGKPVFPISALTGEGLDELL 163 (170)
T ss_pred hhcCCch----hhH---HHHHHHHhhC-----CCCCEEEEecCCCCCHHHHH
Confidence 9984321 111 1222233321 13568999999999999853
No 120
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=7.2e-17 Score=176.52 Aligned_cols=146 Identities=21% Similarity=0.276 Sum_probs=103.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
.++|+++|+||+|||||+|+|..... .....+|+|++.....+.++++.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-------------------------------~vgn~pGvTve~k~g~~~~~~~~ 51 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-------------------------------RVGNWAGVTVERKEGQFSTTDHQ 51 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCCceEeeEEEEEEcCceE
Confidence 47899999999999999999952111 11123899999998899999999
Q ss_pred EEEEeCCCCcccHh--------HHh--hc--cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 010985 145 FTILDAPGHKSYVP--------NMI--SG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 212 (496)
Q Consensus 145 i~liDtpG~~~~~~--------~~~--~~--~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK 212 (496)
++++||||+.++.. +.+ .. ...+|++++|+|++... +.......+..+++| +++|+||
T Consensus 52 i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------r~l~l~~ql~e~giP-vIvVlNK 121 (772)
T PRK09554 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------RNLYLTLQLLELGIP-CIVALNM 121 (772)
T ss_pred EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------hhHHHHHHHHHcCCC-EEEEEEc
Confidence 99999999887632 111 11 24799999999998752 333344556678999 8899999
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 213 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 213 ~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+|+.... .+.. .++.+-+.+| +|++|+|+.+|+|++++.
T Consensus 122 ~Dl~~~~----~i~i---d~~~L~~~LG------~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 122 LDIAEKQ----NIRI---DIDALSARLG------CPVIPLVSTRGRGIEALK 160 (772)
T ss_pred hhhhhcc----CcHH---HHHHHHHHhC------CCEEEEEeecCCCHHHHH
Confidence 9984221 1111 2222223333 579999999999998853
No 121
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=1.1e-16 Score=175.90 Aligned_cols=150 Identities=25% Similarity=0.277 Sum_probs=110.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.....+|+|+|++|+|||||+|+|++....+. +..+|+|++......++.
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv------------------------------~~~pGvT~d~~~~~~~~~ 321 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVV------------------------------EDTPGVTRDRVSYDAEWA 321 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCeeEEEEEEEEEEC
Confidence 34457899999999999999999964322221 223899999988888999
Q ss_pred CeEEEEEeCCCCcc--------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 010985 142 TTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 213 (496)
Q Consensus 142 ~~~i~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~ 213 (496)
+..+.|+||||+.. +...+..++..||++|+|+|+..+.. ....+.+..+...+.| +|+|+||+
T Consensus 322 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~-------~~d~~i~~~Lr~~~~p-vIlV~NK~ 393 (712)
T PRK09518 322 GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLT-------STDERIVRMLRRAGKP-VVLAVNKI 393 (712)
T ss_pred CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECc
Confidence 99999999999753 45566667889999999999988742 3444556677777888 89999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 214 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 214 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+... .. .... +...++. ..+++||++|.|+.++.+
T Consensus 394 D~~~~---~~-------~~~~-~~~lg~~-----~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 394 DDQAS---EY-------DAAE-FWKLGLG-----EPYPISAMHGRGVGDLLD 429 (712)
T ss_pred ccccc---hh-------hHHH-HHHcCCC-----CeEEEECCCCCCchHHHH
Confidence 98321 11 1111 1223443 347999999999998643
No 122
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.72 E-value=5.4e-17 Score=147.65 Aligned_cols=150 Identities=20% Similarity=0.253 Sum_probs=96.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
..++|+++|++|+|||||+++|... ... . ...|+......+..++.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~~----------------------------~----~~~t~g~~~~~~~~~~~ 58 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DID----------------------------T----ISPTLGFQIKTLEYEGY 58 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCC----------------------------C----cCCccccceEEEEECCE
Confidence 4589999999999999999999532 000 0 01122222334455678
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH----HHcCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~----~~~~~~~~ivviNK~D~~~~~ 219 (496)
.+.++||||++.|...+...+..+|++++|+|++.... + ......+..+ ...+.| +++|+||+|+....
T Consensus 59 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 131 (173)
T cd04154 59 KLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR---L---DDCKRELKELLQEERLAGAT-LLILANKQDLPGAL 131 (173)
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC
Confidence 99999999999887777777889999999999987521 0 0112222221 123566 89999999984321
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.. +++...++..... ...++++++||++|.|++++
T Consensus 132 -~~-------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 132 -SE-------EEIREALELDKIS-SHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred -CH-------HHHHHHhCccccC-CCceEEEeccCCCCcCHHHH
Confidence 11 2223333221111 13568999999999999885
No 123
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.72 E-value=5.7e-17 Score=128.06 Aligned_cols=82 Identities=71% Similarity=1.149 Sum_probs=79.1
Q ss_pred CeEEEEEEEEccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEE
Q 010985 294 PFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 373 (496)
Q Consensus 294 p~~~~i~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 373 (496)
||+|+|+++|+..|++++|+|.+|++++||++.++|++..++|++|++++.++++|.|||+|+++|++++..++++|++|
T Consensus 1 plr~~I~~v~~~~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 1 PLRLPIIDKYKDMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGFVL 80 (82)
T ss_pred CeEEEEEeEEEcCCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCCEE
Confidence 79999999998779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 010985 374 SS 375 (496)
Q Consensus 374 ~~ 375 (496)
++
T Consensus 81 ~~ 82 (82)
T cd04089 81 CS 82 (82)
T ss_pred eC
Confidence 74
No 124
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=6.7e-17 Score=145.70 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=97.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|++|+|||||+++|+. +.... +..+..+.+.....+.+++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS--GTFSE-----------------------------RQGNTIGVDFTMKTLEIEGKR 51 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh--CCCcc-----------------------------cCCCccceEEEEEEEEECCEE
Confidence 48999999999999999999852 21110 0011222344444555555
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~~ 219 (496)
..+.|+||||+++|.......+..+|++++|+|++.... ++ .....+..+.. .++| +|+|+||+|+....
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~ 124 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSS---FE---SVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQR 124 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEECccccccc
Confidence 578999999999998877778889999999999988632 10 11222222222 3566 88999999984221
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+ ...++...+.+..+ ...++++||++|.|+.++
T Consensus 125 --~----~~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 125 --E----VLFEEACTLAEKNG-----MLAVLETSAKESQNVEEA 157 (165)
T ss_pred --c----cCHHHHHHHHHHcC-----CcEEEEEECCCCCCHHHH
Confidence 1 01122233333333 236899999999999885
No 125
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.71 E-value=3.7e-17 Score=152.85 Aligned_cols=147 Identities=20% Similarity=0.197 Sum_probs=93.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+..... .....+.|++.....+.+.+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVY-------------------------------AEDQLFATLDPTTRRLRLPD 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhc-------------------------------cCCccceeccceeEEEEecC
Confidence 44689999999999999999999632110 00113456655555566655
Q ss_pred e-EEEEEeCCCCccc--------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEE
Q 010985 143 T-RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVV 210 (496)
Q Consensus 143 ~-~i~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivvi 210 (496)
. .+.|+||||+.+. ...+...+..+|++++|+|++.+... .+.......+..+ +.| +++|+
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~------~~~~~~~~~l~~~~~~~~~-viiV~ 160 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE------EQIETVEKVLKELGAEDIP-MILVL 160 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh------hHHHHHHHHHHHcCcCCCC-EEEEE
Confidence 4 8999999997331 12223335689999999999876321 1122223344333 456 89999
Q ss_pred eeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 211 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 211 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
||+|+... .... ..+.. ...+++++||++|.|+.++.
T Consensus 161 NK~Dl~~~----~~~~-------~~~~~------~~~~~~~~Sa~~~~gi~~l~ 197 (204)
T cd01878 161 NKIDLLDD----EELE-------ERLEA------GRPDAVFISAKTGEGLDELL 197 (204)
T ss_pred EccccCCh----HHHH-------HHhhc------CCCceEEEEcCCCCCHHHHH
Confidence 99998422 1111 11211 13579999999999998853
No 126
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.71 E-value=7.5e-17 Score=144.43 Aligned_cols=133 Identities=19% Similarity=0.224 Sum_probs=87.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|++|+|||||+|+|.... .. ...|... .+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~--------------------------------~~---~~~~~~v-----~~~~~--~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY--------------------------------TL---ARKTQAV-----EFNDK--G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--------------------------------cc---CccceEE-----EECCC--C
Confidence 79999999999999999984110 00 0111111 11111 2
Q ss_pred EEeCCCC----cccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccH
Q 010985 147 ILDAPGH----KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 147 liDtpG~----~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
++||||. .++...++.++..||++|+|+|++.+.. ......+.. ..+.| +++++||+|+... ..
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s-------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~--~~ 108 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES-------RLPAGLLDI--GVSKR-QIAVISKTDMPDA--DV 108 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc-------ccCHHHHhc--cCCCC-eEEEEEccccCcc--cH
Confidence 7999995 4567777788899999999999997742 122222221 23556 8899999998432 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 223 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..+.++++..++. .|++++||++|+|++++.
T Consensus 109 -------~~~~~~~~~~~~~----~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 109 -------AATRKLLLETGFE----EPIFELNSHDPQSVQQLV 139 (158)
T ss_pred -------HHHHHHHHHcCCC----CCEEEEECCCccCHHHHH
Confidence 2234455555542 489999999999999854
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.70 E-value=1.4e-16 Score=143.90 Aligned_cols=149 Identities=18% Similarity=0.175 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|++|+|||||+++|+.... .....+++|.+.....+.+++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-------------------------------EVAPYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------ccCCCCCcccceeEEEEccCceEE
Confidence 4799999999999999999963211 011125667776666677778999
Q ss_pred EEEeCCCCccc-------H-hHHhhcc-ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeecc
Q 010985 146 TILDAPGHKSY-------V-PNMISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMD 214 (496)
Q Consensus 146 ~liDtpG~~~~-------~-~~~~~~~-~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D 214 (496)
+|+||||+.+. + ...+..+ ..+|++|+|+|++.... +.. ....+.+..+... +.| +|+|+||+|
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~~~-~~~~~~~~~l~~~~~~~p-vilv~NK~D 124 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---YSL-EEQLSLFEEIKPLFKNKP-VIVVLNKID 124 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---cch-HHHHHHHHHHHhhcCcCC-eEEEEEccc
Confidence 99999998431 1 1222222 34699999999986421 000 0112223333333 566 999999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+... ....+ ...+.+. ...+++++||++|.|++++.
T Consensus 125 l~~~----~~~~~----~~~~~~~------~~~~~~~~Sa~~~~gi~~l~ 160 (168)
T cd01897 125 LLTF----EDLSE----IEEEEEL------EGEEVLKISTLTEEGVDEVK 160 (168)
T ss_pred cCch----hhHHH----HHHhhhh------ccCceEEEEecccCCHHHHH
Confidence 8422 12222 2222221 14579999999999999863
No 128
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.70 E-value=1.1e-16 Score=141.89 Aligned_cols=145 Identities=24% Similarity=0.330 Sum_probs=95.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|++|+|||||+++|+... . ..+..+++|.+.....+..++ .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-F------------------------------ITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-C------------------------------cCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999996322 1 122336788887777677777 7
Q ss_pred EEEEEeCCCCccc-------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 010985 144 RFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 144 ~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~ 216 (496)
.+.++||||+.++ .+.+...+...|.+++|+|+..+.. .........+.. +.| +++++||+|+.
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~-------~~~~~~~~~~~~-~~p-~ivv~nK~D~~ 121 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILE-------KQTKEIIHHAES-NVP-IILVGNKIDLR 121 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhH-------HHHHHHHHhccc-CCc-EEEEEEcccCC
Confidence 8999999999988 4444444455566555555554321 122222222222 667 89999999993
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 217 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
... ........++..+ ..+++++||.+|.|+.++
T Consensus 122 ~~~--------~~~~~~~~~~~~~-----~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 122 DAK--------LKTHVAFLFAKLN-----GEPIIPLSAETGKNIDSA 155 (161)
T ss_pred cch--------hhHHHHHHHhhcc-----CCceEEeecCCCCCHHHH
Confidence 221 2333444444443 246999999999999874
No 129
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.70 E-value=1.4e-16 Score=142.89 Aligned_cols=149 Identities=20% Similarity=0.195 Sum_probs=93.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|.+|+|||||+++|........ . ...|+......+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~----------------------------~----~~~t~g~~~~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ----------------------------I----IVPTVGFNVESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc----------------------------e----ecCccccceEEEEECCEEEE
Confidence 589999999999999999952110000 0 01122222233556788999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH------HcCCceEEEEEeeccCCCCCc
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~------~~~~~~~ivviNK~D~~~~~~ 220 (496)
++||||+.+|...+...+..+|++|+|+|++.... + ......+..+. ..++| +++|+||+|+....
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~- 120 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR---L---VVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDAL- 120 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH---H---HHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCC-
Confidence 99999999998877788899999999999987521 0 01122222221 13567 89999999984321
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
..+ ++. ..+....+. ...++++++||++|.|++++
T Consensus 121 ~~~---~~~----~~l~~~~~~-~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 121 TAV---KIT----QLLGLENIK-DKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred CHH---HHH----HHhCCcccc-CceEEEEEeeCCCCCchHHH
Confidence 111 111 111110001 12356899999999999985
No 130
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.70 E-value=1.8e-16 Score=142.10 Aligned_cols=149 Identities=18% Similarity=0.228 Sum_probs=100.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
.+|+++|++|+|||||+++|+...- .....++++++.....+..++ .
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF-------------------------------DNQYQATIGIDFLSKTMYLEDKTV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CccCCCceeeeEEEEEEEECCEEE
Confidence 3799999999999999999963211 112235677777666666655 4
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH-HHcC--CceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLG--VTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~-~~~~--~~~~ivviNK~D~~~~~~ 220 (496)
.+.++||||+..|.......+..+|++++|+|++.+.. + ......+..+ ...+ +| +++++||+|+...
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~-- 120 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS---F---DNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDK-- 120 (161)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCE-EEEEEEChhcccc--
Confidence 68999999999998877778899999999999987532 1 1122222222 2233 66 9999999998321
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+... ++.....+.. .++++++||++|.|++++.
T Consensus 121 ~~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 121 RQVST----EEGEKKAKEL------NAMFIETSAKAGHNVKELF 154 (161)
T ss_pred CccCH----HHHHHHHHHh------CCEEEEEeCCCCCCHHHHH
Confidence 11111 1222222222 3578999999999999853
No 131
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=2.8e-16 Score=141.09 Aligned_cols=150 Identities=19% Similarity=0.264 Sum_probs=96.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|++|+|||||+++|+... ... ......|.+.......+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~v~~~~~~~~~ 52 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNE--FSE---------------------------NQESTIGAAFLTQTVNLDDTTVKF 52 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC---------------------------CCCCccceeEEEEEEEECCEEEEE
Confidence 689999999999999999996321 100 011113333333333444445778
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC-cc
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN-WS 221 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~-~~ 221 (496)
.++||||++.|.......++.+|++++|+|++.... + .+....+..+... ++| +++++||+|+.... .+
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~ 125 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEES---F---EKAKSWVKELQRNASPNII-IALVGNKADLESKRQVS 125 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcCC
Confidence 999999999887777777889999999999986521 1 1223333333333 355 88999999984211 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. +++..+....+ ++++++||++|.|+.++.
T Consensus 126 ~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 126 T-------EEAQEYADENG------LLFFETSAKTGENVNELF 155 (163)
T ss_pred H-------HHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 1 12223333332 468999999999999853
No 132
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.70 E-value=1.2e-16 Score=140.38 Aligned_cols=131 Identities=23% Similarity=0.249 Sum_probs=83.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|++|+|||||+++|+...- ....|+. +++.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-----------------------------------~~~~t~~-----~~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-----------------------------------LYKKTQA-----VEYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-----------------------------------cccccee-----EEEcC---e
Confidence 799999999999999999952100 0011211 12222 6
Q ss_pred EEeCCCCc----ccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccH
Q 010985 147 ILDAPGHK----SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 147 liDtpG~~----~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
++||||.. .+.+.+...++.+|++|+|+|++.+.. .+..+. ...++.| +|+|+||+|+.....
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s-------~~~~~~---~~~~~~p-~ilv~NK~Dl~~~~~-- 105 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES-------RFPPGF---ASIFVKP-VIGLVTKIDLAEADV-- 105 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc-------CCChhH---HHhccCC-eEEEEEeeccCCccc--
Confidence 89999972 445555556789999999999988743 122222 2223446 888999999842111
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 223 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. .+++..+++..++ .+++++||++|.|++++
T Consensus 106 -~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 106 -D----IERAKELLETAGA-----EPIFEISSVDEQGLEAL 136 (142)
T ss_pred -C----HHHHHHHHHHcCC-----CcEEEEecCCCCCHHHH
Confidence 1 1223334444432 26899999999999885
No 133
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=4.5e-16 Score=144.41 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=101.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
.....++|+++|++|+|||||+++|+.... +. ......|.|++......
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~~-- 68 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKN-LA----------------------------RTSKTPGRTQLINFFEV-- 68 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-cc----------------------------cccCCCCceeEEEEEec--
Confidence 444678999999999999999999963210 00 11122567776654432
Q ss_pred CCeEEEEEeCCCCc----------cc---HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 010985 141 ETTRFTILDAPGHK----------SY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 207 (496)
Q Consensus 141 ~~~~i~liDtpG~~----------~~---~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~i 207 (496)
+..+.|+||||+. .| ....+.....++++++|+|+..+.. ....+.+..+...+.| ++
T Consensus 69 -~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~i~~~l~~~~~~-~i 139 (196)
T PRK00454 69 -NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK-------ELDLQMIEWLKEYGIP-VL 139 (196)
T ss_pred -CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC-------HHHHHHHHHHHHcCCc-EE
Confidence 4789999999963 22 2222333445688999999887532 2333445566667888 88
Q ss_pred EEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 208 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 208 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+++||+|+. +....+.+.+.+...+... ..+++|+||++|.|+.++.
T Consensus 140 iv~nK~Dl~----~~~~~~~~~~~i~~~l~~~------~~~~~~~Sa~~~~gi~~l~ 186 (196)
T PRK00454 140 IVLTKADKL----KKGERKKQLKKVRKALKFG------DDEVILFSSLKKQGIDELR 186 (196)
T ss_pred EEEECcccC----CHHHHHHHHHHHHHHHHhc------CCceEEEEcCCCCCHHHHH
Confidence 999999983 2333444555555555442 2478999999999998853
No 134
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.69 E-value=2.5e-16 Score=140.93 Aligned_cols=148 Identities=21% Similarity=0.280 Sum_probs=93.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|++|+|||||+++|.. +.... . -.|+......++..+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~--~~~~~----------------------------~----~~t~~~~~~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL--GEVVT----------------------------T----IPTIGFNVETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc--CCCcC----------------------------c----CCccCcCeEEEEECCEEEE
Confidence 589999999999999999942 11000 0 0122222234555678999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHH-HHHH---cCCceEEEEEeeccCCCCCccH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT---LGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~-~~~~---~~~~~~ivviNK~D~~~~~~~~ 222 (496)
|+||||+.+|...+...+..+|++|+|+|++.... + ....+.+. .+.. .+.| +++|+||+|+.... ..
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~-~~ 118 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR---L---GTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL-SE 118 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC-CH
Confidence 99999999988777777899999999999987421 0 01122222 2221 2567 89999999984332 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 223 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.++.. .+....+. ....+++++||++|.|++++.
T Consensus 119 ---~~i~~----~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 119 ---AEISE----KLGLSELK-DRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred ---HHHHH----HhCccccC-CCcEEEEEeeccCCCCHHHHH
Confidence 12222 22111111 124579999999999999853
No 135
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=1.6e-16 Score=161.55 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=100.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
-...|+|+|.||||||||+|+|+..... ....+++|+......+...+
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~-------------------------------vs~~p~TT~~p~~Giv~~~~~ 206 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPK-------------------------------VADYPFTTLVPNLGVVRVDDE 206 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCccc-------------------------------ccCCCCCccCcEEEEEEeCCC
Confidence 3458999999999999999999632211 11237899988888887765
Q ss_pred eEEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEE
Q 010985 143 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVV 210 (496)
Q Consensus 143 ~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-----~~~~~~ivvi 210 (496)
..+.|+||||..+ ....+++.+..+|++++|||++...-. ....+....+..+.. .+.| +|+|+
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~---d~~e~~~~l~~eL~~~~~~L~~kP-~IlVl 282 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGS---DPVENARIIINELEKYSPKLAEKP-RWLVF 282 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccccc---ChHHHHHHHHHHHHhhhhhhcCCC-EEEEE
Confidence 5699999999643 344566778899999999998721000 000111222222232 2466 78899
Q ss_pred eeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 211 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 211 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
||+|+.. .+.+. +.+..+.+..++ ..+++++||+++.|++++.+
T Consensus 283 NKiDl~~----~~el~---~~l~~l~~~~~~----~~~Vi~ISA~tg~GIdeLl~ 326 (390)
T PRK12298 283 NKIDLLD----EEEAE---ERAKAIVEALGW----EGPVYLISAASGLGVKELCW 326 (390)
T ss_pred eCCccCC----hHHHH---HHHHHHHHHhCC----CCCEEEEECCCCcCHHHHHH
Confidence 9999832 22222 223333333332 13689999999999998644
No 136
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.69 E-value=1.8e-16 Score=125.60 Aligned_cols=82 Identities=62% Similarity=0.963 Sum_probs=78.0
Q ss_pred CeEEEEEEEEcc-CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeE
Q 010985 294 PFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 372 (496)
Q Consensus 294 p~~~~i~~~~~~-~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~v 372 (496)
||+|+|+++|+. .|++++|+|.+|++++||+|.++|++..++|++|++++.++++|.|||+|+++|++++..++++|++
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~v 80 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGDV 80 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCCE
Confidence 799999999932 8999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred Eec
Q 010985 373 LSS 375 (496)
Q Consensus 373 l~~ 375 (496)
|++
T Consensus 81 l~~ 83 (83)
T cd03698 81 LCS 83 (83)
T ss_pred EeC
Confidence 974
No 137
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.69 E-value=2.8e-16 Score=140.57 Aligned_cols=147 Identities=17% Similarity=0.160 Sum_probs=92.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
.+|+++|.+|+|||||+++|+.. ..... ...++.+.-...+..++ .
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~~~~ 49 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN--HFVDE------------------------------YDPTIEDSYRKQVVIDGETC 49 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCcCC------------------------------cCCcchheEEEEEEECCEEE
Confidence 58999999999999999999631 11100 01111111122233333 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHH---cCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~---~~~~~~ivviNK~D~~~~~ 219 (496)
.+.++||||+++|.......+..+|++++|+|.+.... ++ .....+ .+... .+.| +++|.||+|+....
T Consensus 50 ~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~ 122 (162)
T cd04138 50 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKS---FE---DIHTYREQIKRVKDSDDVP-MVLVGNKCDLAART 122 (162)
T ss_pred EEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcccccce
Confidence 57889999999998777777889999999999886421 10 111111 12221 2566 89999999984321
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
... .++..+.+.. ..+++++||++|.|++++.
T Consensus 123 ~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 123 VSS-------RQGQDLAKSY------GIPYIETSAKTRQGVEEAF 154 (162)
T ss_pred ecH-------HHHHHHHHHh------CCeEEEecCCCCCCHHHHH
Confidence 111 2223333333 2478999999999999863
No 138
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=1.9e-16 Score=142.23 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=94.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|.+|+|||||+++++... .... ...++.+.....+...+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~~~ 49 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSY--FVTD------------------------------YDPTIEDSYTKQCEIDGQW 49 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCcc------------------------------cCCCccceEEEEEEECCEE
Confidence 4799999999999999999996321 1100 01122222222233444
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~ 218 (496)
..+.++||||+.+|...+...+..+|++++|+|++.... +. .....+..+.. .++| +++++||+|+...
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~ 122 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGS---FE---EVDKFHTQILRVKDRDEFP-MILVGNKADLEHQ 122 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCC-EEEEeeCcccccc
Confidence 568899999999998777777889999999999987521 10 11111222222 2567 8999999998422
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. .. ...+...+.+..+ ++++++||++|.|+.++.
T Consensus 123 ~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 123 R--KV----SREEGQELARKLK------IPYIETSAKDRLNVDKAF 156 (164)
T ss_pred c--ee----cHHHHHHHHHHcC------CcEEEeeCCCCCCHHHHH
Confidence 1 00 0112233344332 468999999999999853
No 139
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.69 E-value=1.2e-16 Score=146.93 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=93.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEE-EeCCe
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF-ETETT 143 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~-~~~~~ 143 (496)
.++|+++|++|+|||||++++++... . ......|.+........ ...+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~--~----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 52 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEF--V----------------------------NTVPTKGFNTEKIKVSLGNSKGI 52 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc--C----------------------------CcCCccccceeEEEeeccCCCce
Confidence 47899999999999999999953211 0 00000122222111111 22457
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHH
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.+.|+||||++.|...+...+..+|++|+|+|++....-..+. ....+........+.| +++|+||+|+... ...+
T Consensus 53 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~--~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~-~~~~ 128 (183)
T cd04152 53 TFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAK--TELHKITRFSENQGVP-VLVLANKQDLPNA-LSVS 128 (183)
T ss_pred EEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHH--HHHHHHHhhhhcCCCc-EEEEEECcCcccc-CCHH
Confidence 8999999999888776666678999999999998752100000 0001111222234677 8999999998421 2222
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 224 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 224 ~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. ..++.-..+.....++++++||++|.|++++..
T Consensus 129 ~~-------~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 163 (183)
T cd04152 129 EV-------EKLLALHELSASTPWHVQPACAIIGEGLQEGLE 163 (183)
T ss_pred HH-------HHHhCccccCCCCceEEEEeecccCCCHHHHHH
Confidence 22 112111111101235789999999999998754
No 140
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=2.2e-16 Score=157.40 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=99.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe-C
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-E 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~ 141 (496)
+-...|+++|.||||||||+++|......+ ...+++|++.....+.+ +
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~v-------------------------------a~ypfTT~~p~~G~v~~~~ 204 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKI-------------------------------ADYPFTTLHPNLGVVRVDD 204 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCcc-------------------------------CCCCCceeCceEEEEEeCC
Confidence 345689999999999999999995321111 11267888888888877 5
Q ss_pred CeEEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-----cCCceEEEE
Q 010985 142 TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLV 209 (496)
Q Consensus 142 ~~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-----~~~~~~ivv 209 (496)
+..++++||||..+ .-...++.+..+|++|+|+|++.... + .+.......+.. .+.| +++|
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s---~---e~~~~~~~EL~~~~~~L~~kp-~IIV 277 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDP---V---EDYKTIRNELEKYSPELADKP-RILV 277 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCC---H---HHHHHHHHHHHHhhhhcccCC-eEEE
Confidence 67899999999642 33455667788999999999986421 0 011111122222 2456 8899
Q ss_pred EeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 210 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 210 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+||+|+.... +... ..+..+++.. ..+++++||++++|++++.+
T Consensus 278 ~NKiDL~~~~---~~~~---~~~~~~~~~~------~~~i~~iSAktg~GI~eL~~ 321 (335)
T PRK12299 278 LNKIDLLDEE---EERE---KRAALELAAL------GGPVFLISAVTGEGLDELLR 321 (335)
T ss_pred EECcccCCch---hHHH---HHHHHHHHhc------CCCEEEEEcCCCCCHHHHHH
Confidence 9999984221 1111 1122222322 24689999999999998644
No 141
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.69 E-value=3.8e-16 Score=140.35 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=94.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|.+++|||||+++|+.. ..... .....+.++......+......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMD--GYEPQ---------------------------QLSTYALTLYKHNAKFEGKTILV 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CCCCC---------------------------cCCceeeEEEEEEEEECCEEEEE
Confidence 58999999999999999999521 11000 00011222222222233334678
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCccHH
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.|+||||++.|.......+..+|++|+|+|++.+... ....+.+..+... ++| +++|.||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~----- 119 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITY------KNLSKWYEELREYRPEIP-CIVVANKIDLDPS----- 119 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCc-EEEEEECccCchh-----
Confidence 8999999999988777888999999999999875321 0122233333333 567 8999999998311
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 224 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 224 ~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ..+...+.+.. ..+++++||++|.|++++.+
T Consensus 120 ~----~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 120 V----TQKKFNFAEKH------NLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred H----HHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 1 11112222222 35789999999999998643
No 142
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.69 E-value=2.4e-16 Score=141.31 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=94.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|++|+|||||+++|+...- .. ......|.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTF--DP---------------------------DLAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC--Cc---------------------------ccCCcccceEEEEEEEECCEEEEE
Confidence 4899999999999999999953211 00 011123333333322333334678
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCcc
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~~~~ 221 (496)
.|+||||++.|.......++.+|++++|+|++..... + .....+..+.. .+.| +++|+||+|+......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~---~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~ 124 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTF---T---NLETWLNELETYSTNNDIV-KMLVGNKIDKENREVT 124 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHH---H---hHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccC
Confidence 9999999999877777778899999999999875320 0 11112222222 2456 7899999999533222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.+. ...+.+.. .++++++|+++|.|+.++
T Consensus 125 ~~~-------~~~~~~~~------~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 125 REE-------GLKFARKH------NMLFIETSAKTRDGVQQA 153 (161)
T ss_pred HHH-------HHHHHHHc------CCEEEEEecCCCCCHHHH
Confidence 222 22233322 357999999999999985
No 143
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.68 E-value=3.2e-16 Score=140.68 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=96.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|++|+|||||+++|+... . .....+.++.+.....+...+ .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 49 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGK--F-----------------------------SEQYKSTIGVDFKTKTIEVDGKRV 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--C-----------------------------CCCCCCceeeEEEEEEEEECCEEE
Confidence 489999999999999999995221 0 011113334444444455555 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC-C
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV-N 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~-~ 219 (496)
.+.++|+||+..|.......+..+|++++|+|+++.... + .....+..+.. .++| +++|+||+|+... .
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~---~---~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~ 122 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESF---E---NLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQ 122 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHH---H---HHHHHHHHHHHhCCCCCe-EEEEEEchhcccccC
Confidence 788999999999888777788899999999999875320 0 11111122222 2466 9999999998431 1
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+.+. ...+.+.. .++++++|+.+|.|++++.
T Consensus 123 ~~~~~-------~~~~~~~~------~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 123 VSREE-------AEAFAEEH------GLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred CCHHH-------HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 22222 22233333 3469999999999999853
No 144
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=2.3e-16 Score=163.11 Aligned_cols=158 Identities=19% Similarity=0.177 Sum_probs=101.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
+-...|+++|.||||||||+|+|......+ ...+++|++.....+...+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkI-------------------------------adypfTTl~P~lGvv~~~~ 205 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKI-------------------------------ADYPFTTLVPNLGVVQAGD 205 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccc-------------------------------cccCcccccceEEEEEECC
Confidence 456789999999999999999995321111 1127899998888888889
Q ss_pred eEEEEEeCCCCccc-------HhHHhhccccCCEEEEEEeCCCCccc-cccCCCCchHHHHH-HH----------HHcCC
Q 010985 143 TRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFE-TGFEKGGQTREHVM-LA----------KTLGV 203 (496)
Q Consensus 143 ~~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g~~e-~~~~~~~~t~e~~~-~~----------~~~~~ 203 (496)
..|+|+||||..+. ....++.+..+|++|+|||++..... ..++......+.+. .. ...+.
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 99999999996421 23345567789999999999742100 00000001111121 11 12356
Q ss_pred ceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 204 TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 204 ~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
| +|||+||+|++.. . ++.+.+...++..+ ++++++||+++.|+.++..
T Consensus 286 P-~IVVlNKiDL~da---~----el~e~l~~~l~~~g------~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 286 P-RLVVLNKIDVPDA---R----ELAEFVRPELEARG------WPVFEVSAASREGLRELSF 333 (500)
T ss_pred C-EEEEEECccchhh---H----HHHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 6 7899999998321 1 12222333344332 4799999999999999754
No 145
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.68 E-value=3.2e-16 Score=141.91 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=94.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++.++|+++|++|+|||||+++|.. +.... ..+.+..+ ...+...+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~--~~~~~------------------------------~~~t~g~~--~~~~~~~~ 52 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKL--GQSVT------------------------------TIPTVGFN--VETVTYKN 52 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHcc--CCCcc------------------------------ccCCcccc--eEEEEECC
Confidence 3458999999999999999999842 11100 00111122 12344567
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHH-HHH---HcCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAK---TLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~-~~~---~~~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||+..|.......++.+|++|+|+|++.... + ....+.+. .+. ..++| +++|.||+|+...
T Consensus 53 ~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 125 (168)
T cd04149 53 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---DEARQELHRIINDREMRDAL-LLVFANKQDLPDA 125 (168)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhh---H---HHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC
Confidence 889999999999987777777889999999999987521 1 11222222 221 12466 9999999998422
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.+. +++...++..... ...++++++||++|.|+.++
T Consensus 126 -~~~-------~~i~~~~~~~~~~-~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 126 -MKP-------HEIQEKLGLTRIR-DRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred -CCH-------HHHHHHcCCCccC-CCcEEEEEeeCCCCCChHHH
Confidence 121 1222222111111 12357899999999999875
No 146
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.68 E-value=7.6e-16 Score=138.14 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|.+|+|||||+++|. .+.... .-.|+......++.....+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~--~~~~~~--------------------------------~~pt~g~~~~~~~~~~~~~ 46 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLK--LGEIVT--------------------------------TIPTIGFNVETVEYKNISF 46 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHh--cCCCcc--------------------------------cCCCCCcceEEEEECCEEE
Confidence 479999999999999999984 121110 0011111222345567889
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCcc
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~~~~ 221 (496)
.|+||||+..|.......++.+|++|+|+|++.... + .+..+.+..+.. .+.| ++++.||+|+.... .
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~ 118 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---I---GEAREELQRMLNEDELRDAV-LLVFANKQDLPNAM-S 118 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCC-C
Confidence 999999999988777777899999999999986421 1 122232322211 2356 89999999984321 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. +++.. .+....+. ...+.++++||++|.|++++
T Consensus 119 ~---~~i~~----~~~~~~~~-~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 119 A---AEVTD----KLGLHSLR-NRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred H---HHHHH----HhCccccC-CCCEEEEEeeCCCCCCHHHH
Confidence 1 12222 11110111 12456789999999999985
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.68 E-value=5.1e-16 Score=144.81 Aligned_cols=155 Identities=22% Similarity=0.237 Sum_probs=93.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
..++|+++|++|+|||||+|+|.... . .....+|+|++.... ...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~-----------------------------~~~~~~~~t~~~~~~--~~~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK--V-----------------------------RVGKRPGVTRKPNHY--DWG-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--C-----------------------------ccCCCCceeeCceEE--eec--
Confidence 45799999999999999999995211 0 112236788775433 333
Q ss_pred EEEEEeCCCCc-----------ccHhH---H-hhccccCCEEEEEEeCCCCcc-ccccC---CCCchHHHHHHHHHcCCc
Q 010985 144 RFTILDAPGHK-----------SYVPN---M-ISGASQADIGVLVISARKGEF-ETGFE---KGGQTREHVMLAKTLGVT 204 (496)
Q Consensus 144 ~i~liDtpG~~-----------~~~~~---~-~~~~~~aD~~ilVvda~~g~~-e~~~~---~~~~t~e~~~~~~~~~~~ 204 (496)
.+.++||||+. .|... . ..++..+|++++|+|+....- ...+. ....+.+.+..+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 68999999952 22221 1 224567899999999865210 00000 001335556666667888
Q ss_pred eEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCC-c--cCCeeEEeecccccccccccc
Q 010985 205 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN-V--KKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 205 ~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~--~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+++|+||+|+... ..+.. .++.. .+++. + ....+++++||++| |++++.
T Consensus 133 -~iiv~NK~Dl~~~--~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~ 184 (201)
T PRK04213 133 -PIVAVNKMDKIKN--RDEVL----DEIAE---RLGLYPPWRQWQDIIAPISAKKG-GIEELK 184 (201)
T ss_pred -eEEEEECccccCc--HHHHH----HHHHH---HhcCCccccccCCcEEEEecccC-CHHHHH
Confidence 8899999998322 11122 22222 22221 0 00136899999999 999853
No 148
>COG2262 HflX GTPases [General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=157.41 Aligned_cols=171 Identities=18% Similarity=0.158 Sum_probs=118.0
Q ss_pred hhhhhcchhhhccccccccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcC
Q 010985 40 EVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMD 119 (496)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d 119 (496)
..++..++.++...+.....+.....+.|+++|.+|||||||+|+|....- ...+.
T Consensus 167 ~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~----------------------- 222 (411)
T COG2262 167 AKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADV-YVADQ----------------------- 222 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCe-ecccc-----------------------
Confidence 345667777777777777777888899999999999999999999952111 11111
Q ss_pred CchhhhhcccEEeeeeEEEEeC-CeEEEEEeCCCCccc--------HhHHhhccccCCEEEEEEeCCCCccccccCCCCc
Q 010985 120 TNEEERIKGKTVEVGRAHFETE-TTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQ 190 (496)
Q Consensus 120 ~~~~e~~~G~T~~~~~~~~~~~-~~~i~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~ 190 (496)
-=.|.|.....+.+. ++.+.|.||-|+-+- .+.++.....||++++|||++++... .+
T Consensus 223 -------LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~------~~ 289 (411)
T COG2262 223 -------LFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEIL------EK 289 (411)
T ss_pred -------ccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHH------HH
Confidence 115677777777776 699999999996443 56666777899999999999997542 23
Q ss_pred hHHHHHHHHHc---CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 191 TREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 191 t~e~~~~~~~~---~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.......+..+ .+| +|+|+||+|+... .+.... +... .+ ..+++||++|.|++.|.+
T Consensus 290 ~~~v~~vL~el~~~~~p-~i~v~NKiD~~~~---~~~~~~--------~~~~-----~~-~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 290 LEAVEDVLAEIGADEIP-IILVLNKIDLLED---EEILAE--------LERG-----SP-NPVFISAKTGEGLDLLRE 349 (411)
T ss_pred HHHHHHHHHHcCCCCCC-EEEEEecccccCc---hhhhhh--------hhhc-----CC-CeEEEEeccCcCHHHHHH
Confidence 33334455554 346 8999999998322 111111 1110 11 479999999999988543
No 149
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.68 E-value=1e-15 Score=138.59 Aligned_cols=146 Identities=16% Similarity=0.235 Sum_probs=94.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|++|+|||||+++|+... ... ...+..+.+.....+.+++ .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKK--FSN-----------------------------QYKATIGADFLTKEVTVDDKLV 49 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCc-----------------------------CcCCccceEEEEEEEEECCEEE
Confidence 489999999999999999996321 000 0001122233333344444 4
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-----HHHHHc------CCceEEEEEee
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-----MLAKTL------GVTKLLLVVNK 212 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-----~~~~~~------~~~~~ivviNK 212 (496)
.+.++|+||+..|.......++.+|++|+|+|++.+. +.+.+ .++..+ ++| +++|+||
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK 118 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPK----------SFESLDSWRDEFLIQASPSDPENFP-FVVLGNK 118 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCccCCCCce-EEEEEEC
Confidence 5679999999999887888889999999999998752 22211 112222 567 8899999
Q ss_pred ccCCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 213 MDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 213 ~D~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+|+... .... +++..+++..+ ..+++++|+++|.|+.++.+
T Consensus 119 ~Dl~~~~~~~~-------~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 119 IDLEEKRQVST-------KKAQQWCQSNG-----NIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred cccccccccCH-------HHHHHHHHHcC-----CceEEEEECCCCCCHHHHHH
Confidence 999421 1122 22233344333 35799999999999988643
No 150
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.67 E-value=8.7e-16 Score=137.57 Aligned_cols=150 Identities=21% Similarity=0.193 Sum_probs=98.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..+|+++|++|+|||||+|+|+...-... .....++.......+...+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIV------------------------------SPKPQTTRNRIRGIYTDDDAQ 52 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEec------------------------------cCCCCceeceEEEEEEcCCeE
Confidence 57899999999999999999963211100 011334444444455556788
Q ss_pred EEEEeCCCCcccH--------hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 010985 145 FTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 145 i~liDtpG~~~~~--------~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~ 216 (496)
+.++||||+.... ......+..+|++++|+|+..+.. ......+..+...+.| +++|+||+|+.
T Consensus 53 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~Dl~ 124 (168)
T cd04163 53 IIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG-------EGDEFILELLKKSKTP-VILVLNKIDLV 124 (168)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC-------chHHHHHHHHHHhCCC-EEEEEEchhcc
Confidence 9999999976542 233455788999999999997621 2344455556666778 88999999983
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 217 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. ..+...+....+.. ..+ ..+++++|++++.|++++
T Consensus 125 ~---~~~~~~~~~~~~~~---~~~-----~~~~~~~s~~~~~~~~~l 160 (168)
T cd04163 125 K---DKEDLLPLLEKLKE---LGP-----FAEIFPISALKGENVDEL 160 (168)
T ss_pred c---cHHHHHHHHHHHHh---ccC-----CCceEEEEeccCCChHHH
Confidence 2 12223333322221 111 247899999999999884
No 151
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.67 E-value=3.7e-16 Score=140.12 Aligned_cols=148 Identities=20% Similarity=0.197 Sum_probs=95.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|++|+|||||+++|+...- . .+..+..+.+.....+..++ .
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF--K-----------------------------EDSQHTIGVEFGSKIIRVGGKRV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--C-----------------------------CCCCCceeeeEEEEEEEECCEEE
Confidence 4899999999999999999963211 0 01112233333333333333 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~~~ 220 (496)
.+.|+||||+++|.......+..+|++|+|+|++.+..- ......+..+.. .++| +++|.||+|+....
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~- 121 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSF------EALPTWLSDARALASPNIV-VILVGNKSDLADQR- 121 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhc-
Confidence 788999999999988777888999999999999886321 011222222222 3566 89999999984211
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. ...+++..+.+..+ ++++.+||++|.|+.++
T Consensus 122 -~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 122 -E----VTFLEASRFAQENG------LLFLETSALTGENVEEA 153 (161)
T ss_pred -c----CCHHHHHHHHHHcC------CEEEEEECCCCCCHHHH
Confidence 0 01122333344332 57999999999999985
No 152
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.67 E-value=4.3e-16 Score=140.09 Aligned_cols=147 Identities=20% Similarity=0.193 Sum_probs=91.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--Ce
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~ 143 (496)
.+|+++|++|+|||||+++|+... ..... ..++.+.....+..+ ..
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 48 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGH--FVDDY------------------------------DPTIEDSYRKQIEIDGEVC 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc--CCccc------------------------------CCchhhhEEEEEEECCEEE
Confidence 379999999999999999996321 11100 111111111222333 36
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHH-HHHH---cCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT---LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~-~~~~---~~~~~~ivviNK~D~~~~~ 219 (496)
.+.++||||+++|.......+..+|++++|+|++.... ++ ....... +... .+.| +++|.||+|+....
T Consensus 49 ~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~ 121 (164)
T smart00173 49 LLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQS---FE---EIKKFREQILRVKDRDDVP-IVLVGNKCDLESER 121 (164)
T ss_pred EEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 78899999999998777777889999999999987521 00 1111111 1121 2456 88999999984321
Q ss_pred -ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 -~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
...+ ....+.+.. ..+++++||++|.|++++.
T Consensus 122 ~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 122 VVSTE-------EGKELARQW------GCPFLETSAKERVNVDEAF 154 (164)
T ss_pred eEcHH-------HHHHHHHHc------CCEEEEeecCCCCCHHHHH
Confidence 1111 222233332 3579999999999999863
No 153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=8.5e-16 Score=139.94 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=96.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..+|+++|++|+|||||+++|+. +... . ...|.......+...+..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~--~~~~----------------------------~----~~~t~~~~~~~~~~~~~~ 60 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLL--GEVV----------------------------H----TSPTIGSNVEEIVYKNIR 60 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCC----------------------------C----cCCccccceEEEEECCeE
Confidence 47999999999999999999952 1110 0 112333333456667889
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHH---cCCceEEEEEeeccCCCCCc
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~---~~~~~~ivviNK~D~~~~~~ 220 (496)
+.|+||||+..|.......+..+|++|+|+|++.... + ...++.+ .++.. .++| +++++||+|+... .
T Consensus 61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~---~---~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~-~ 132 (174)
T cd04153 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRER---L---PLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGA-M 132 (174)
T ss_pred EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCC-C
Confidence 9999999999887777777889999999999987521 0 0111212 22221 2466 8999999998432 1
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+.+ ++.+.+ ...... ...++++++||++|.|++++.
T Consensus 133 ~~~---~i~~~l----~~~~~~-~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 133 TPA---EISESL----GLTSIR-DHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred CHH---HHHHHh----Cccccc-CCceEEEecccCCCCCHHHHH
Confidence 221 222221 100011 124679999999999999853
No 154
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.67 E-value=7e-16 Score=139.42 Aligned_cols=149 Identities=19% Similarity=0.183 Sum_probs=94.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|.+|+|||||+++++. +.... +..+.++.+.....+...+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~--~~f~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 51 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE--DSFNP-----------------------------SFISTIGIDFKIRTIELDGKK 51 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh--CcCCc-----------------------------ccccCccceEEEEEEEECCEE
Confidence 48999999999999999999952 11110 0012222233333334444
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~~ 219 (496)
..+.|+||||+++|-......+..+|++|+|+|++.+.. ++ ...+.+..+.. .+.| +++|.||+|+....
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~ 124 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKS---FE---NIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKR 124 (167)
T ss_pred EEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEECccccccc
Confidence 578999999999987777777889999999999987532 11 11222222222 2456 88999999994221
Q ss_pred -ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 -~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
... ++...+.+.. ..+++++||++|.|+.++.
T Consensus 125 ~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 125 VVSK-------EEGEALADEY------GIKFLETSAKANINVEEAF 157 (167)
T ss_pred CCCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 111 1222233332 3578999999999999864
No 155
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.67 E-value=1.5e-15 Score=136.20 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=94.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC----
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 141 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---- 141 (496)
++|+++|.+|+|||||+++|... ... .+..+.+..+.....+...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKG--IFT-----------------------------KDYKKTIGVDFLEKQIFLRQSDE 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCCCCcEEEEEEEEEEEEcCCCC
Confidence 47999999999999999999521 110 0111233344433333333
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCC-
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV- 218 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~--~~~~~~ivviNK~D~~~~- 218 (496)
...+.|+||||+++|-..+...++.+|++++|+|++.... ++ .....+..+.. .++| +++|+||+|+...
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 122 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES---FE---AIESWKEKVEAECGDIP-MVLVQTKIDLLDQA 122 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEEChhccccc
Confidence 4679999999999998777778899999999999987532 10 11111111211 3677 8999999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
..+. ++...+.+..+ .+++++|+++|.|++++
T Consensus 123 ~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 123 VITN-------EEAEALAKRLQ------LPLFRTSVKDDFNVTEL 154 (162)
T ss_pred CCCH-------HHHHHHHHHcC------CeEEEEECCCCCCHHHH
Confidence 1111 22233333333 47999999999999885
No 156
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.67 E-value=5.6e-16 Score=140.42 Aligned_cols=149 Identities=19% Similarity=0.147 Sum_probs=94.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|.+++|||||+++|... ... ....|+......++..+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~--~~~--------------------------------~~~~T~~~~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD--EFM--------------------------------QPIPTIGFNVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC--CCC--------------------------------CcCCcCceeEEEEEECCEEEE
Confidence 5899999999999999999521 100 012333333344566789999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-H---cCCceEEEEEeeccCCCCCccH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T---LGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~---~~~~~~ivviNK~D~~~~~~~~ 222 (496)
++||||+.+|...+...+..+|++++|+|++.... + ....+.+..+. . .+.| +++|.||+|+... .+.
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~ 118 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDR---V---SEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA-LSV 118 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC-CCH
Confidence 99999999888777777899999999999987421 0 01222222221 1 1345 8999999998422 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 223 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+ ++..+++..++.....+.++++||++|.|+.++.
T Consensus 119 ~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 119 E-------EMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred H-------HHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 2 1222222111100123578899999999999864
No 157
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.67 E-value=7.6e-16 Score=141.16 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=95.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++.++|+++|..++|||||+++|.. +.... ...|+......++..+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~--~~~~~--------------------------------~~pt~g~~~~~~~~~~ 60 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVT--------------------------------TIPTIGFNVETVEYKN 60 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc--CCCcc--------------------------------ccCCcceeEEEEEECC
Confidence 4458999999999999999999841 11110 0112222223456678
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH-H---HcCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~-~---~~~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||+..|...+...++.+|++|+|+|++.... + ...+..+... . ..++| +++|.||+|++..
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s---~---~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~ 133 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCC
Confidence 899999999999888777777899999999999987521 0 0112222211 1 12456 8999999998433
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
... +++...+.-..+. ...+.++++||++|+|+.+..
T Consensus 134 -~~~-------~~~~~~l~l~~~~-~~~~~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 134 -MNA-------AEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGL 170 (181)
T ss_pred -CCH-------HHHHHHhCccccC-CCceEEEeccCCCCCCHHHHH
Confidence 111 1222222111111 123457799999999999853
No 158
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.67 E-value=4e-16 Score=155.46 Aligned_cols=157 Identities=19% Similarity=0.182 Sum_probs=97.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
+-...|+++|.||||||||+++|......+ ...+.+|++.....+.+.+
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~v-------------------------------a~y~fTT~~p~ig~v~~~~ 203 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKI-------------------------------ADYPFTTLVPNLGVVRVDD 203 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccc-------------------------------cCCCCCccCCEEEEEEeCC
Confidence 445789999999999999999995321111 1124577776666677766
Q ss_pred -eEEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH-HH-cCCceEEEEEee
Q 010985 143 -TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT-LGVTKLLLVVNK 212 (496)
Q Consensus 143 -~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~-~~-~~~~~~ivviNK 212 (496)
..++|+||||+.+ .....++.+..+|++|+|+|++.......++.-....+.+... .. .+.| +++|+||
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK 282 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNK 282 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeC
Confidence 8999999999742 2344556677899999999998641100000000111111111 11 2456 8899999
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 213 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 213 ~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+|+... +..+++.+++. +.. ..+++++||+++.|++++.
T Consensus 283 ~DL~~~----~~~~~~~~~l~---~~~------~~~vi~iSAktg~GI~eL~ 321 (329)
T TIGR02729 283 IDLLDE----EELAELLKELK---KAL------GKPVFPISALTGEGLDELL 321 (329)
T ss_pred ccCCCh----HHHHHHHHHHH---HHc------CCcEEEEEccCCcCHHHHH
Confidence 998322 22333333222 222 2468999999999999854
No 159
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.67 E-value=9.7e-16 Score=136.08 Aligned_cols=147 Identities=21% Similarity=0.231 Sum_probs=96.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe--CCe
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~--~~~ 143 (496)
++|+++|++++|||||+++|+..... .+..+..+.+.....+.. ...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFD-------------------------------ENYKSTIGVDFKSKTIEIDGKTV 49 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-------------------------------CccCCceeeeeEEEEEEECCEEE
Confidence 47999999999999999999522111 001122223333333333 347
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCC-CCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH-TVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~-~~~ 219 (496)
.+.++|+||+..|.......+..+|++++|+|++.... + ......+..+... +.| +++++||+|+. ...
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~ 122 (159)
T cd00154 50 KLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRES---F---ENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQ 122 (159)
T ss_pred EEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEEccccccccc
Confidence 78999999999998888888899999999999987421 1 1122233333333 366 89999999984 111
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
... +++..+.... ..+++.+|+++|.|+.++
T Consensus 123 ~~~-------~~~~~~~~~~------~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 123 VST-------EEAQQFAKEN------GLLFFETSAKTGENVEEL 153 (159)
T ss_pred ccH-------HHHHHHHHHc------CCeEEEEecCCCCCHHHH
Confidence 122 2233333332 357999999999999885
No 160
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.67 E-value=1.7e-15 Score=136.35 Aligned_cols=148 Identities=15% Similarity=0.180 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe--CCe
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~--~~~ 143 (496)
++|+++|++++|||||+++|+... . ..+..+.++.+.....+.. ...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGR--F-----------------------------VSKYLPTIGIDYGVKKVSVRNKEV 49 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--C-----------------------------CCCCCCccceeEEEEEEEECCeEE
Confidence 489999999999999999996321 0 0011122333333333333 346
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH--------cCCceEEEEEeeccC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--------LGVTKLLLVVNKMDD 215 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~--------~~~~~~ivviNK~D~ 215 (496)
.++|+||||+..|.......+..+|++|+|+|++.... ++ .....+..+.. .+.| +++|.||+|+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 122 (168)
T cd04119 50 RVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS---FE---ALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDL 122 (168)
T ss_pred EEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhccccccCCCce-EEEEEEchhc
Confidence 78899999999888777677889999999999987532 00 11111222211 2345 8999999998
Q ss_pred CC-CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 216 HT-VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 216 ~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. ...+.+. ...+.... ..+++++||++|.|+.++.
T Consensus 123 ~~~~~~~~~~-------~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 123 TKHRAVSEDE-------GRLWAESK------GFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ccccccCHHH-------HHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 42 1112211 12222332 2578999999999999864
No 161
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=1.7e-15 Score=140.73 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=90.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|.+|+|||||+++++. +... .+..+.++.+.....+.+++ +
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~--~~f~-----------------------------~~~~pt~~~~~~~~~i~~~~~~~ 49 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLA--QEFP-----------------------------EEYIPTEHRRLYRPAVVLSGRVY 49 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHc--CCCC-----------------------------cccCCccccccceeEEEECCEEE
Confidence 4799999999999999999852 1111 11112233333223344455 5
Q ss_pred EEEEEeCCCCcccH--------hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH----HHHHH------cCCce
Q 010985 144 RFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKT------LGVTK 205 (496)
Q Consensus 144 ~i~liDtpG~~~~~--------~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~----~~~~~------~~~~~ 205 (496)
.+.|+||||+.+|- ......+..+|++|+|+|++.+. +.+++ ..+.. .++|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~----------S~~~~~~~~~~i~~~~~~~~~~~p- 118 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD----------SFHYVKLLRQQILETRPAGNKEPP- 118 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcccCCCCCC-
Confidence 68899999987652 11334568899999999998752 22222 11111 3467
Q ss_pred EEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 206 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 206 ~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+++|.||+|+....... .+++..+.++. ..++++++||++|.|++++.+
T Consensus 119 iiivgNK~Dl~~~~~~~------~~~~~~~~~~~-----~~~~~~e~Sak~g~~v~~lf~ 167 (198)
T cd04142 119 IVVVGNKRDQQRHRFAP------RHVLSVLVRKS-----WKCGYLECSAKYNWHILLLFK 167 (198)
T ss_pred EEEEEECcccccccccc------HHHHHHHHHHh-----cCCcEEEecCCCCCCHHHHHH
Confidence 89999999994321110 11222222221 135799999999999998643
No 162
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.66 E-value=6.2e-16 Score=139.96 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=95.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..+|+++|++|+|||||+++++... ... ......|.+.......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~~~~ 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKR--FQP---------------------------VHDLTIGVEFGARMITIDGKQIK 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCC---------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 4799999999999999999995221 100 00011233333332233323367
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC-Cc
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV-NW 220 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~-~~ 220 (496)
+.|+||||++.|.......+..+|++|+|+|++.... +. .....+..+.. -++| +++|.||+|+... ..
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~ 127 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV 127 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC
Confidence 8999999999887777777889999999999986432 10 11222222222 2456 8999999998421 11
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+. ++...+.+.. ..+++++||++|.|++++.
T Consensus 128 ~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 128 SY-------EEGEAFAKEH------GLIFMETSAKTASNVEEAF 158 (168)
T ss_pred CH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 22 1222333333 3568999999999999853
No 163
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.66 E-value=6e-16 Score=139.30 Aligned_cols=147 Identities=21% Similarity=0.196 Sum_probs=93.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
.+|+++|.+|+|||||+++++ .|..... ...++.+.....+..++ .
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~--~~~~~~~------------------------------~~~t~~~~~~~~~~~~~~~~ 49 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFV--QGIFVEK------------------------------YDPTIEDSYRKQVEVDGQQC 49 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHH--hCCCCcc------------------------------cCCcchheEEEEEEECCEEE
Confidence 689999999999999999985 2222111 01122222223344443 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~----~~~~~~~ivviNK~D~~~~~ 219 (496)
.+.|+||||+..|.......++.+|++++|+|.+.... ++ ...+.+..+. ..++| +++|.||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 122 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECCcchhcc
Confidence 67799999999998877778899999999999876421 00 1111222221 13467 89999999984321
Q ss_pred -ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 -~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+.+ +...+.+.. ..+++++||++|.|+.++.
T Consensus 123 ~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 123 VVGKE-------QGQNLARQW------GCAFLETSAKAKINVNEIF 155 (164)
T ss_pred EEcHH-------HHHHHHHHh------CCEEEEeeCCCCCCHHHHH
Confidence 1111 122223333 2579999999999999863
No 164
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.66 E-value=4.4e-16 Score=133.96 Aligned_cols=132 Identities=20% Similarity=0.285 Sum_probs=93.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
.+|.++|+++||||||+++|.. .+.....|..+. +.=
T Consensus 2 krimliG~~g~GKTTL~q~L~~-----------------------------------~~~~~~KTq~i~--------~~~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG-----------------------------------EEIRYKKTQAIE--------YYD 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC-----------------------------------CCCCcCccceeE--------ecc
Confidence 3789999999999999999942 111122333321 112
Q ss_pred EEEeCCC----CcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 146 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 146 ~liDtpG----~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
.+||||| ++.|.+..+..+..||++++|.||+.+. ...--..+..++.| +|=||||+|++. +
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~----------~~~pP~fa~~f~~p-vIGVITK~Dl~~---~ 104 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR----------SVFPPGFASMFNKP-VIGVITKIDLPS---D 104 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC----------ccCCchhhcccCCC-EEEEEECccCcc---c
Confidence 4699999 6667788888889999999999999852 11112344556667 899999999941 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.+.. +..+++|+..|+. .++++|+.+|+|+++|
T Consensus 105 ~~~i----~~a~~~L~~aG~~-----~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 105 DANI----ERAKKWLKNAGVK-----EIFEVSAVTGEGIEEL 137 (143)
T ss_pred hhhH----HHHHHHHHHcCCC-----CeEEEECCCCcCHHHH
Confidence 2233 3445677777876 4699999999999984
No 165
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.66 E-value=8.3e-16 Score=141.34 Aligned_cols=157 Identities=16% Similarity=0.163 Sum_probs=98.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++..+|+++|.+|+|||||+++|... .... ...|+......+...+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKND--RLAQ--------------------------------HQPTQHPTSEELAIGN 60 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcC--CCcc--------------------------------cCCccccceEEEEECC
Confidence 34589999999999999999999521 1000 0122223334455678
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~----~~~~~~~ivviNK~D~~~~ 218 (496)
..+.++||||+..+...+...+..+|++|+|+|++.... + ....+.+..+. ..+.| +++|+||+|++..
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKER---F---AESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 899999999999887777777899999999999986521 0 12222222221 24667 8999999998432
Q ss_pred CccHHHHHHHHHHHHHH--HHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 NWSKERYDEIESKMTPF--LKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~--l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+.+. +.+.+.-. ....+........++++||++|.|+++..
T Consensus 134 -~~~~~---i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~ 177 (184)
T smart00178 134 -ASEDE---LRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGF 177 (184)
T ss_pred -CCHHH---HHHHcCCCcccccccccCCceeEEEEeecccCCChHHHH
Confidence 23322 22222100 00000000124579999999999999853
No 166
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=1.2e-15 Score=156.01 Aligned_cols=150 Identities=22% Similarity=0.233 Sum_probs=97.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-Ce
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TT 143 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~~ 143 (496)
...|+++|.||||||||+++|......+. ..+++|++.....+.+. +.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa-------------------------------~ypfTTl~PnlG~v~~~~~~ 206 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIA-------------------------------NYHFTTLVPNLGVVETDDGR 206 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccc-------------------------------cCCcceeceEEEEEEEeCCc
Confidence 44899999999999999999963221111 12678888877777776 78
Q ss_pred EEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEe
Q 010985 144 RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVN 211 (496)
Q Consensus 144 ~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-----~~~~~~ivviN 211 (496)
.++|+||||... .....++.+..+|++|+|||++.......+ .........+.. .+.| +|||+|
T Consensus 207 ~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~---e~~~~i~~EL~~y~~~L~~kP-~IVV~N 282 (424)
T PRK12297 207 SFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI---EDYEKINKELKLYNPRLLERP-QIVVAN 282 (424)
T ss_pred eEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChH---HHHHHHHHHHhhhchhccCCc-EEEEEe
Confidence 999999999642 234456667789999999999753100000 011111122222 3566 789999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+|+.. ..+.+++ +.+.++ .+++++||+++.|++++.+
T Consensus 283 K~DL~~---~~e~l~~-------l~~~l~------~~i~~iSA~tgeGI~eL~~ 320 (424)
T PRK12297 283 KMDLPE---AEENLEE-------FKEKLG------PKVFPISALTGQGLDELLY 320 (424)
T ss_pred CCCCcC---CHHHHHH-------HHHHhC------CcEEEEeCCCCCCHHHHHH
Confidence 999832 1222222 222222 3689999999999999754
No 167
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.66 E-value=1.2e-15 Score=137.64 Aligned_cols=149 Identities=20% Similarity=0.180 Sum_probs=96.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
..+|+++|.+|+|||||+++|+.. ... ....+.++.+.....+..++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADD--TYT-----------------------------ESYISTIGVDFKIRTIELDGKT 50 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCCCCccceeEEEEEEEECCEE
Confidence 478999999999999999999521 110 01113333444434444444
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~ 219 (496)
..+.++||||+++|.......++.+|++|+|+|+++... + ....+.+..+..+ +.| +++|.||+|+....
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~ 123 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKR 123 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHH---H---HhHHHHHHHHHHhCCCCCc-EEEEEEChhccccc
Confidence 568999999999988777777889999999999987521 1 1222223333332 456 88999999984221
Q ss_pred -ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 -~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
... ++...+.+.. .++++++||++|.|+.++.
T Consensus 124 ~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 124 VVDY-------SEAQEFADEL------GIPFLETSAKNATNVEQAF 156 (166)
T ss_pred CCCH-------HHHHHHHHHc------CCeEEEEECCCCcCHHHHH
Confidence 111 1222233332 3579999999999999864
No 168
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.66 E-value=1.3e-15 Score=136.36 Aligned_cols=148 Identities=20% Similarity=0.222 Sum_probs=91.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe-CCeEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 145 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~i 145 (496)
+|+++|.+|+|||||+++|.... ... .....|.+. ..+.. ....+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~--~~~----------------------------~~~t~~~~~----~~~~~~~~~~l 46 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE--LVT----------------------------TIPTVGFNV----EMLQLEKHLSL 46 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--ccc----------------------------ccCccCcce----EEEEeCCceEE
Confidence 48999999999999999995221 100 000012211 22222 34789
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHH-HH---HcCCceEEEEEeeccCCCCCcc
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-AK---TLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~-~~---~~~~~~~ivviNK~D~~~~~~~ 221 (496)
.++||||+..+...+...+..+|++|+|+|+.++.. + ......+.. +. ..+.| +++|+||+|+... ..
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~ 118 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR---L---DESQKELKHILKNEHIKGVP-VVLLANKQDLPGA-LT 118 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECcccccC-cC
Confidence 999999999887777777889999999999987521 0 011112211 11 13567 9999999998422 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. +++.. .+....+......+++++||++|.|++++
T Consensus 119 ~---~~i~~----~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 119 A---EEITR----RFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred H---HHHHH----HcCCcccCCCCcEEEEecccccCCChHHH
Confidence 1 22222 11111111112467999999999999985
No 169
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=8.3e-16 Score=142.23 Aligned_cols=150 Identities=16% Similarity=0.151 Sum_probs=93.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|.+|+|||||+++|+...-... +..+.+..+.....+..++ .
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~ 50 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG------------------------------NFIATVGIDFRNKVVTVDGVKV 50 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc------------------------------CcCCcccceeEEEEEEECCEEE
Confidence 4799999999999999999952211000 0012222233222233333 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC-
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN- 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~- 219 (496)
.+.|+||||+..|.......+..+|++|+|+|++..... ......+..+..+ ++| +++|+||+|+....
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~------~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~ 123 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASF------DNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERV 123 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCCc-EEEEEEcccchhccc
Confidence 788999999998877677778899999999999875210 0112222233322 456 89999999984211
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... .+...+.+.. ..+++++||++|.|++++..
T Consensus 124 ~~~-------~~~~~l~~~~------~~~~~e~Sa~~~~~v~~l~~ 156 (191)
T cd04112 124 VKR-------EDGERLAKEY------GVPFMETSAKTGLNVELAFT 156 (191)
T ss_pred cCH-------HHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 111 1222233333 24799999999999998643
No 170
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.65 E-value=1.7e-15 Score=136.62 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=93.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--Ce
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~ 143 (496)
.+|+++|.+|+|||||+++|+.. .... .-.+.++.+.....+..+ ..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 50 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADD--SFTS-----------------------------AFVSTVGIDFKVKTVFRNDKRV 50 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCceeeEEEEEEEEECCEEE
Confidence 68999999999999999999521 1100 000111222222222222 36
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC-
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN- 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~- 219 (496)
.+.|+||||+++|.......++.+|++++|+|.+.... ++ +..+.+..+... +.| +++|.||+|+....
T Consensus 51 ~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~ 123 (165)
T cd01865 51 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FN---AVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERV 123 (165)
T ss_pred EEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCC-EEEEEECcccCcccc
Confidence 78999999999998877778899999999999876421 11 222222233322 345 89999999984321
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
...+ +...+.+..+ .+++++||++|.|+.++.+
T Consensus 124 ~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 124 VSSE-------RGRQLADQLG------FEFFEASAKENINVKQVFE 156 (165)
T ss_pred cCHH-------HHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 1111 1222333332 4689999999999998643
No 171
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.65 E-value=4.7e-15 Score=134.23 Aligned_cols=153 Identities=15% Similarity=0.189 Sum_probs=95.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
..++|+++|.+|+|||||+++++. +.... +..+.++.+.....+..++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 52 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVT--NKFDT-----------------------------QLFHTIGVEFLNKDLEVDGH 52 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHc--CCCCc-----------------------------CcCCceeeEEEEEEEEECCe
Confidence 458999999999999999999952 11110 1112223333333344444
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHH---HcCCceEEEEEeeccCCC
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAK---TLGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~---~~~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|.......++.+|++++|+|.+.......+ ......+ .... ..++| +++|.||+|+..
T Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 128 (170)
T cd04116 53 FVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNL---SNWKKEFIYYADVKEPESFP-FVVLGNKNDIPE 128 (170)
T ss_pred EEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhH---HHHHHHHHHhcccccCCCCc-EEEEEECccccc
Confidence 5678899999999877777778899999999998875321000 0111111 1111 12456 899999999842
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
..... +++.++++..++ .+++++||++|.|+.++
T Consensus 129 ~~~~~-------~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 129 RQVST-------EEAQAWCRENGD-----YPYFETSAKDATNVAAA 162 (170)
T ss_pred cccCH-------HHHHHHHHHCCC-----CeEEEEECCCCCCHHHH
Confidence 22222 233344444432 37899999999999885
No 172
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.65 E-value=9e-16 Score=139.93 Aligned_cols=151 Identities=17% Similarity=0.229 Sum_probs=96.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.++|+++|.+++|||||+++|.. +.... ..+ |+......+.....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~--~~~~~------------------------------~~~--t~~~~~~~~~~~~~ 57 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKL--GESVT------------------------------TIP--TIGFNVETVTYKNI 57 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc--CCCCC------------------------------cCC--ccccceEEEEECCE
Confidence 458999999999999999999841 11100 001 22222223445678
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~~ 219 (496)
.+.|+||||+..|...+...+..||++|+|+|++.... + ....+.+..+.. .++| +++|.||+|+...
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~- 129 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDR---I---DEAREELHRMLNEDELRDAV-ILVFANKQDLPDA- 129 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccC-
Confidence 89999999999988877777899999999999986421 1 123333332221 2456 8999999998432
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+.+ ++.+. +.-.... ...+.++++||++|.|+.++.
T Consensus 130 ~~~~---~i~~~----~~~~~~~-~~~~~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 130 MKAA---EITEK----LGLHSIR-DRNWYIQPTCATSGDGLYEGL 166 (175)
T ss_pred CCHH---HHHHH----hCccccC-CCcEEEEEeeCCCCCCHHHHH
Confidence 1222 22221 1100011 124567899999999999853
No 173
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=1.8e-15 Score=141.10 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=95.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC---C
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 142 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~ 142 (496)
++|+++|.+|+|||||+++|+. +.... ...+.+..+.....+..+ .
T Consensus 1 ~KivivG~~~vGKTsli~~l~~--~~~~~-----------------------------~~~~t~~~d~~~~~v~~~~~~~ 49 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVH--GIFSQ-----------------------------HYKATIGVDFALKVIEWDPNTV 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHc--CCCCC-----------------------------CCCCceeEEEEEEEEEECCCCE
Confidence 4799999999999999999963 11110 001222233333334443 4
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-------HcCCceEEEEEeeccC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-------TLGVTKLLLVVNKMDD 215 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-------~~~~~~~ivviNK~D~ 215 (496)
..+.|+||||++.|...+...+..+|++|+|+|.+.... |+ .....+..+. ..++| +|+|.||+|+
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s---~~---~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl 122 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST---FE---AVLKWKADLDSKVTLPNGEPIP-CLLLANKCDL 122 (201)
T ss_pred EEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhcccCCCCCc-EEEEEECCCc
Confidence 678999999999987777777889999999999987531 00 1111111111 13467 8999999998
Q ss_pred CC-CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HT-VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. ...+. +++..+.+..++ .+++++||++|.|++++..
T Consensus 123 ~~~~~~~~-------~~~~~~~~~~~~-----~~~~e~Sak~~~~v~e~f~ 161 (201)
T cd04107 123 KKRLAKDG-------EQMDQFCKENGF-----IGWFETSAKEGINIEEAMR 161 (201)
T ss_pred ccccccCH-------HHHHHHHHHcCC-----ceEEEEeCCCCCCHHHHHH
Confidence 42 11122 234444454442 3689999999999998644
No 174
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.65 E-value=1.3e-15 Score=137.27 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=95.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
..+|+++|.+|+|||||+++|+... .. .+..+.++.+.....+..++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNE--FN-----------------------------LDSKSTIGVEFATRSIQIDGKT 51 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CC-----------------------------CCCCCccceEEEEEEEEECCEE
Confidence 3789999999999999999995221 00 01113334444444455555
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~~ 219 (496)
..+.++||||++.|.......+..+|++|+|+|+++... ++ ...+.+..+.. .++| +++|.||+|+....
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~ 124 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQT---FE---NVERWLKELRDHADSNIV-IMLVGNKSDLRHLR 124 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 468899999999887777777889999999999986422 10 11112222222 2456 89999999984221
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
... .++...+.... .++++++||++|.|+.++.
T Consensus 125 --~~~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 125 --AVP----TEEAKAFAEKN------GLSFIETSALDGTNVEEAF 157 (165)
T ss_pred --cCC----HHHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 101 11222233322 3579999999999999863
No 175
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.65 E-value=3.1e-15 Score=134.16 Aligned_cols=148 Identities=19% Similarity=0.156 Sum_probs=90.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
.+|+++|.+|+|||||+++++. +..... ...++.+.....+..++ .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~~~~~ 49 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ--GIFVEK------------------------------YDPTIEDSYRKQIEVDGQQC 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcc------------------------------cCCchhhhEEEEEEECCEEE
Confidence 6899999999999999999962 111100 01111111122233344 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~~ 219 (496)
.+.|+||||+++|.......++.+|++++|+|.+.... ++ .....+..+.. .+.| +|+|.||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (163)
T cd04136 50 MLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSS---FN---DLQDLREQILRVKDTENVP-MVLVGNKCDLEDER 122 (163)
T ss_pred EEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 67889999999987766667789999999999986421 00 11122222222 2467 88999999984211
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. . ..++...+.+.. ..+++++||++|.|+.++.
T Consensus 123 --~-~---~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 123 --V-V---SREEGQALARQW------GCPFYETSAKSKINVDEVF 155 (163)
T ss_pred --e-e---cHHHHHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 0 0 011122222332 2579999999999999853
No 176
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=1.2e-15 Score=137.90 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=96.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
+...+|+++|++|+|||||+++|+. +.+.. ...+.++.+.....+...+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 53 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP-----------------------------GQGATIGVDFMIKTVEIKG 53 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeEEEEEEEEECC
Confidence 3468999999999999999999852 11110 0112233444444556665
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~ 217 (496)
..+.++|+||+..|.......+..+|++++|+|+..+.. +. .....+..+.. .++| +++|+||+|+..
T Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~ 126 (169)
T cd04114 54 EKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYANNKVI-TILVGNKIDLAE 126 (169)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 457889999999998887888899999999999986531 00 11122222222 2566 789999999842
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. +...+....+ ... ...+++++|+++|.|+.++.
T Consensus 127 ~~---~i~~~~~~~~----~~~-----~~~~~~~~Sa~~~~gv~~l~ 161 (169)
T cd04114 127 RR---EVSQQRAEEF----SDA-----QDMYYLETSAKESDNVEKLF 161 (169)
T ss_pred cc---ccCHHHHHHH----HHH-----cCCeEEEeeCCCCCCHHHHH
Confidence 11 1111111222 111 13578999999999998853
No 177
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.65 E-value=8.8e-16 Score=122.57 Aligned_cols=81 Identities=32% Similarity=0.479 Sum_probs=76.7
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC----ceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcc
Q 010985 295 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 368 (496)
Q Consensus 295 ~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~ 368 (496)
|+|+|+++| ++.|+|++|+|++|.+++||++.++|.+ ..++|++|+++++++++|.|||+++++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 579999999 6889999999999999999999999984 6899999999999999999999999999999999999
Q ss_pred eeeEEec
Q 010985 369 SGFVLSS 375 (496)
Q Consensus 369 ~G~vl~~ 375 (496)
+|++|++
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 178
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.65 E-value=3.1e-15 Score=136.74 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=95.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe---
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--- 140 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~--- 140 (496)
..++|+++|.+|+|||||++++... .... ...+.+..+.....+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 51 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDN--KFNP-----------------------------KFITTVGIDFREKRVVYNSS 51 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC--CCCc-----------------------------cCCCccceEEEEEEEEEcCc
Confidence 3589999999999999999998521 1110 00111222222222222
Q ss_pred ---------CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc----CCceEE
Q 010985 141 ---------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLL 207 (496)
Q Consensus 141 ---------~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~----~~~~~i 207 (496)
....+.|+||||+++|.......++.+|++|+|+|+++... +. .....+..+... +.| ++
T Consensus 52 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii 124 (180)
T cd04127 52 GPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQS---FL---NVRNWMSQLQTHAYCENPD-IV 124 (180)
T ss_pred cccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EE
Confidence 23678999999999988877778899999999999987421 10 112222222221 445 89
Q ss_pred EEEeeccCCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 208 LVVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 208 vviNK~D~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+|.||+|+... ..+. ++...+.+..+ ++++++||++|.|++++.+
T Consensus 125 iv~nK~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~e~Sak~~~~v~~l~~ 170 (180)
T cd04127 125 LCGNKADLEDQRQVSE-------EQAKALADKYG------IPYFETSAATGTNVEKAVE 170 (180)
T ss_pred EEEeCccchhcCccCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 99999998421 1122 22333344332 4799999999999998644
No 179
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.7e-15 Score=134.84 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=106.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
.....+-|+++|..|+|||||+|+|+...+.. .....||.|+...+..+..
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------------------------rtSktPGrTq~iNff~~~~ 70 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLA-----------------------------RTSKTPGRTQLINFFEVDD 70 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCccee-----------------------------ecCCCCCccceeEEEEecC
Confidence 44467899999999999999999997433211 1123499999988766543
Q ss_pred CCeEEEEEeCCCCc-------------ccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 010985 141 ETTRFTILDAPGHK-------------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 207 (496)
Q Consensus 141 ~~~~i~liDtpG~~-------------~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~i 207 (496)
. +.|+|.||.- +.+...+..-..-.++++++|+..+.. ...++.+..+...++| ++
T Consensus 71 ~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~-------~~D~em~~~l~~~~i~-~~ 139 (200)
T COG0218 71 E---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK-------DLDREMIEFLLELGIP-VI 139 (200)
T ss_pred c---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC-eE
Confidence 3 8899999941 123333333345678999999999853 4578899999999999 88
Q ss_pred EEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 208 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 208 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
|++||+|... ..........+.+.+ ++.+.....++..|+.++.|++++.
T Consensus 140 vv~tK~DKi~----~~~~~k~l~~v~~~l---~~~~~~~~~~~~~ss~~k~Gi~~l~ 189 (200)
T COG0218 140 VVLTKADKLK----KSERNKQLNKVAEEL---KKPPPDDQWVVLFSSLKKKGIDELK 189 (200)
T ss_pred EEEEccccCC----hhHHHHHHHHHHHHh---cCCCCccceEEEEecccccCHHHHH
Confidence 9999999832 223333334443333 2221112227888999999998854
No 180
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.64 E-value=1.4e-15 Score=136.38 Aligned_cols=148 Identities=22% Similarity=0.222 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe--CCe
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~--~~~ 143 (496)
.+|+++|.+|+|||||+++|+... .... ..+++.+........ ...
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 48 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE--FVED------------------------------YEPTKADSYRKKVVLDGEDV 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--Cccc------------------------------cCCcchhhEEEEEEECCEEE
Confidence 489999999999999999996321 1100 011111111112222 346
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHH-HHHH---cCCceEEEEEeeccCCCC-
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT---LGVTKLLLVVNKMDDHTV- 218 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~-~~~~---~~~~~~ivviNK~D~~~~- 218 (496)
.+.++||||+.+|.......++.+|.+++|+|...... +. ...+.+. +... .++| +++|+||+|+...
T Consensus 49 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~ 121 (164)
T cd04139 49 QLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMES---FT---ATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKR 121 (164)
T ss_pred EEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEcccccccc
Confidence 78999999999998888888899999999999876421 00 1112221 2222 4677 8999999998431
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
....+. ...+.+.. ..+++++||++|.|++++.+
T Consensus 122 ~~~~~~-------~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 122 QVSSEE-------AANLARQW------GVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred ccCHHH-------HHHHHHHh------CCeEEEeeCCCCCCHHHHHH
Confidence 111111 12222332 24789999999999998643
No 181
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.7e-15 Score=131.77 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=116.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
......+|+++|+.++||||++.++.++......... ++ + .....+.+|+...+..+..
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~------------~~-------~--s~k~kr~tTva~D~g~~~~ 64 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADA------------SS-------V--SGKGKRPTTVAMDFGSIEL 64 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccc------------cc-------c--ccccccceeEeecccceEE
Confidence 4456789999999999999999999755443221110 00 0 0000345888888888888
Q ss_pred CC-eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC-CceEEEEEeeccCCCC
Q 010985 141 ET-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMDDHTV 218 (496)
Q Consensus 141 ~~-~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~-~~~~ivviNK~D~~~~ 218 (496)
.+ +.+.|+|||||++|-..+.-..+.++.+|++||++.+.. ...++.+..+...+ +| ++|++||.|+..+
T Consensus 65 ~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~-------~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a 136 (187)
T COG2229 65 DEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPIT-------FHAEEIIDFLTSRNPIP-VVVAINKQDLFDA 136 (187)
T ss_pred cCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcc-------hHHHHHHHHHhhccCCC-EEEEeeccccCCC
Confidence 76 899999999999998888888889999999999998732 12245556666666 66 9999999999655
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
|+.+.+++... ... .+.|+|+++|..+++..+.
T Consensus 137 -~ppe~i~e~l~-------~~~----~~~~vi~~~a~e~~~~~~~ 169 (187)
T COG2229 137 -LPPEKIREALK-------LEL----LSVPVIEIDATEGEGARDQ 169 (187)
T ss_pred -CCHHHHHHHHH-------hcc----CCCceeeeecccchhHHHH
Confidence 56555444332 211 1578999999999988763
No 182
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.64 E-value=6.9e-16 Score=142.51 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=97.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+..+|+++|++|+|||||+++|... ... ....|+......+..++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~--~~~--------------------------------~~~~T~~~~~~~i~~~~ 62 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDD--RLA--------------------------------QHVPTLHPTSEELTIGN 62 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--CCc--------------------------------ccCCccCcceEEEEECC
Confidence 34689999999999999999998521 110 01123333334566678
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~----~~~~~~~ivviNK~D~~~~ 218 (496)
..+.++|+||+..+.......+..+|++++|+|+.+... + ....+.+..+. ..+.| +++++||+|+...
T Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~ 135 (190)
T cd00879 63 IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPER---F---QESKEELDSLLSDEELANVP-FLILGNKIDLPGA 135 (190)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC
Confidence 899999999999887766777889999999999986421 0 01222222221 23467 8999999998432
Q ss_pred CccHHHHHHHHHHHHHHHHhcCC----------CccCCeeEEeecccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGY----------NVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~----------~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+.+ ++...+..... ......+++++||++|.|++++.
T Consensus 136 -~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~ 183 (190)
T cd00879 136 -VSEE-------ELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF 183 (190)
T ss_pred -cCHH-------HHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHH
Confidence 1222 22222221110 00123579999999999999853
No 183
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=2.5e-15 Score=137.92 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=96.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++..+|+++|++|+|||||++++. .+.... . . .|+......+...+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~--~~~~~~----------------------------~--~--~T~~~~~~~~~~~~ 60 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLK--LGEVVT----------------------------T--I--PTIGFNVETVEYKN 60 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh--cCCccc----------------------------c--C--CccccceEEEEECC
Confidence 445899999999999999999984 121110 0 0 12222223445578
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH-HH---cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~-~~---~~~~~~ivviNK~D~~~~ 218 (496)
..+.++||||++.|...+...+..+|++|+|+|+++... + ....+.+... .. ...| +++|.||.|+...
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 133 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRER---I---GDAREELERMLSEDELRDAV-LLVFANKQDLPNA 133 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCC
Confidence 899999999999888877778899999999999986421 1 1122222222 11 2355 8999999998432
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. +.+ ++... +....+. ...+.++++||++|.|+.++.+
T Consensus 134 ~-~~~---~i~~~----l~~~~~~-~~~~~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 134 M-STT---EVTEK----LGLHSVR-QRNWYIQGCCATTAQGLYEGLD 171 (182)
T ss_pred C-CHH---HHHHH----hCCCccc-CCcEEEEeeeCCCCCCHHHHHH
Confidence 1 221 22221 1111111 1245677999999999998643
No 184
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.64 E-value=1.1e-15 Score=136.53 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=94.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|++|+|||||+++|+.... . . .-.|.......+...+..+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~----------------------------~----~~~t~~~~~~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--V----------------------------T----TIPTIGFNVETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--C----------------------------C----CCCCcCcceEEEEECCEEEE
Confidence 589999999999999999963320 0 0 01122222334555688999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCCccH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~----~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
++||||+..|-......+..+|++++|+|++.+.. + ......+.... ..+.| +++|+||+|+....
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~--- 116 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRER---I---EEAKEELHKLLNEEELKGVP-LLIFANKQDLPGAL--- 116 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-EEEEeeccCCcccc---
Confidence 99999999887666667789999999999987521 0 12222222221 23566 89999999984321
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 223 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
..+++.+.+.... .. ...++++++||++|.|++++
T Consensus 117 -~~~~~~~~~~~~~----~~-~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 117 -SVSELIEKLGLEK----IL-GRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred -CHHHHHHhhChhh----cc-CCcEEEEEeeCCCCCCHHHH
Confidence 1222322222111 11 12568999999999999985
No 185
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.64 E-value=4.3e-15 Score=133.96 Aligned_cols=149 Identities=17% Similarity=0.128 Sum_probs=91.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
.+|+++|.+|+|||||+++++. +...... ... -+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~--~~f~~~~--------------------------~~t-~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK--GTFRESY--------------------------IPT-IEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCCCc--------------------------CCc-chheE-EEEEEECCEEEEE
Confidence 6899999999999999999852 2111000 000 00111 1111223344678
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEeeccCCCC-
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTV- 218 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~------~~~~~~ivviNK~D~~~~- 218 (496)
.++||||+++|..........+|++|+|+|.+..... ......+..+.. .++| +++|.||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~------~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSL------EELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKR 124 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHH------HHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccC
Confidence 9999999999987666777899999999999875321 012222232332 2467 8899999998431
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
....+ +...+.... .++++++||++|.|+.++.
T Consensus 125 ~v~~~-------~~~~~~~~~------~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 125 EVSSN-------EGAACATEW------NCAFMETSAKTNHNVQELF 157 (165)
T ss_pred eecHH-------HHHHHHHHh------CCcEEEeecCCCCCHHHHH
Confidence 11111 111122222 3568999999999999853
No 186
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.63 E-value=3.7e-15 Score=135.22 Aligned_cols=152 Identities=17% Similarity=0.180 Sum_probs=94.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--eE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 144 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~ 144 (496)
+|+++|.+++|||||+++++. +... .+-.+.+..+.....+..++ ..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~--~~f~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~ 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK--DVFD-----------------------------KNYKATIGVDFEMERFEILGVPFS 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCC-----------------------------CCCCCceeeEEEEEEEEECCEEEE
Confidence 689999999999999999962 1111 01112222333333444444 56
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC---CceEEEEEeeccCCCCCcc
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~---~~~~ivviNK~D~~~~~~~ 221 (496)
+.|+||||+.+|.......++.+|++|+|+|++.... + ....+.+..+.... .+.+|+|.||+|+....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~-- 122 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVAS---L---EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA-- 122 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc--
Confidence 8999999999998777777899999999999977421 0 01222222222221 12388999999983221
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.......+...+.+.. ..+++.+||++|.|++++..
T Consensus 123 --~~~~~~~~~~~~~~~~------~~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 123 --QYALMEQDAIKLAAEM------QAEYWSVSALSGENVREFFF 158 (170)
T ss_pred --cccccHHHHHHHHHHc------CCeEEEEECCCCCCHHHHHH
Confidence 1111122223333333 24689999999999998644
No 187
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.63 E-value=1e-14 Score=137.57 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=94.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC---C
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 142 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~ 142 (496)
++|+++|.+|+|||||+++|+.. .+. .+..+-++.|.....+... .
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~--~~~-----------------------------~~~~~T~~~d~~~~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKE--GFG-----------------------------KSYKQTIGLDFFSKRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcC--CCC-----------------------------CCCCCceeEEEEEEEEEeCCCCE
Confidence 47999999999999999999521 111 0111223344444444443 3
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-----CCceEEEEEeeccCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-----~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||++.|.......+..+|++|+|+|++.... |+ ...+.+..+... ..+.+++|.||+|+..
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s---~~---~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS---FE---NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 678999999998887766677889999999999987522 10 112222223222 1123889999999842
Q ss_pred C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. .... ++...+.+..+ .+++.+||++|.|+.++.+
T Consensus 124 ~~~v~~-------~~~~~~~~~~~------~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 124 NRTVKD-------DKHARFAQANG------MESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred ccccCH-------HHHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 1 1111 12223333332 4689999999999998644
No 188
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.63 E-value=1.2e-15 Score=137.80 Aligned_cols=148 Identities=19% Similarity=0.225 Sum_probs=93.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--Ce
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~ 143 (496)
++|+++|++|+|||||+++|.. +.+.... .+-+..+.....+..+ ..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~--~~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~~~ 51 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTE--KKFMADC-----------------------------PHTIGVEFGTRIIEVNGQKI 51 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCCCC-----------------------------CcccceeEEEEEEEECCEEE
Confidence 6899999999999999999952 2111100 0111112222223333 35
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC-
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN- 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~- 219 (496)
.+.|+||||++.|.......++.+|++|+|+|.+.... |+ ...+.+...... +.| +++|.||+|+....
T Consensus 52 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~ 124 (166)
T cd04122 52 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YN---HLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRD 124 (166)
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECcccccccC
Confidence 68999999999998877778899999999999987532 10 112222222222 345 89999999984321
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+. ++...+.+.. ..+++.+||++|.|+.++.
T Consensus 125 ~~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 125 VTY-------EEAKQFADEN------GLLFLECSAKTGENVEDAF 156 (166)
T ss_pred cCH-------HHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 111 2223333333 3579999999999999853
No 189
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.63 E-value=1.2e-15 Score=121.83 Aligned_cols=83 Identities=33% Similarity=0.548 Sum_probs=77.5
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEEcCccccccCCCCeEEEEeccCCccCccee
Q 010985 295 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 370 (496)
Q Consensus 295 ~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G 370 (496)
|+|+|+++| ++.|++++|+|++|++++||++.++|. +..++|++|+++++++++|.|||+|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 689999999 578999999999999999999999996 5789999999999999999999999999999998999999
Q ss_pred eEEecCC
Q 010985 371 FVLSSVA 377 (496)
Q Consensus 371 ~vl~~~~ 377 (496)
++|++++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999763
No 190
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=2.6e-15 Score=138.75 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=91.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--eE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 144 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~ 144 (496)
+|+++|.+|+|||||+++|+. +.+.... ..++.+.....+...+ ..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~--~~f~~~~------------------------------~~t~~~~~~~~~~~~~~~~~ 48 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL--NHFVETY------------------------------DPTIEDSYRKQVVVDGQPCM 48 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCCCccC------------------------------CCchHhhEEEEEEECCEEEE
Confidence 489999999999999999952 2221100 1111111111222333 45
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEeeccCCCC
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~------~~~~~~ivviNK~D~~~~ 218 (496)
+.|+||||+++|.......++.+|++|+|+|.+..... + .....+..+.. .++| +|+|.||+|+...
T Consensus 49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~---~---~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~ 121 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTF---E---RVERFREQIQRVKDESAADVP-IMIVGNKCDKVYE 121 (190)
T ss_pred EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHH---H---HHHHHHHHHHHHhcccCCCCC-EEEEEEChhcccc
Confidence 88999999999988777788999999999999875321 0 11222222221 2456 8899999998421
Q ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. .+. .+...+.+.. ..+++++||++|.|+.++..
T Consensus 122 ~~v~~-------~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 122 REVST-------EEGAALARRL------GCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred CccCH-------HHHHHHHHHh------CCEEEEecCCCCCCHHHHHH
Confidence 1 111 1122223333 24789999999999998644
No 191
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.63 E-value=5.3e-15 Score=133.65 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=90.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe--CCe
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~--~~~ 143 (496)
.+|+++|.+|+|||||+++++. +.... ...+.+..+.....+.. ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLT--GEFEK-----------------------------KYVATLGVEVHPLDFHTNRGKI 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeEEEEEEEEECCEEE
Confidence 4799999999999999999962 11110 00011112222222333 346
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-c-CCceEEEEEeeccCCCCCcc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L-GVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~-~~~~~ivviNK~D~~~~~~~ 221 (496)
.+.++||||+++|.......+..+|++|+|+|.+.+... ......+..+.. . ++| +++|.||+|+......
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~~~ 122 (166)
T cd00877 50 RFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTY------KNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRKVK 122 (166)
T ss_pred EEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCc-EEEEEEchhcccccCC
Confidence 789999999988765555566789999999999876321 011111222222 2 577 8999999998422111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.+...+.+. ...+++++||++|.|++++.+
T Consensus 123 --------~~~~~~~~~------~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 123 --------AKQITFHRK------KNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred --------HHHHHHHHH------cCCEEEEEeCCCCCChHHHHH
Confidence 111122222 135799999999999998643
No 192
>PLN03118 Rab family protein; Provisional
Probab=99.63 E-value=5.8e-15 Score=138.82 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=95.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~- 141 (496)
+..++|+++|++|+|||||+++|+.. .+. +..+.++.+.....+..+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~--~~~------------------------------~~~~t~~~~~~~~~~~~~~ 59 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISS--SVE------------------------------DLAPTIGVDFKIKQLTVGG 59 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC--CCC------------------------------CcCCCceeEEEEEEEEECC
Confidence 34689999999999999999999632 110 001222233333334443
Q ss_pred -CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHH----cCCceEEEEEeeccC
Q 010985 142 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT----LGVTKLLLVVNKMDD 215 (496)
Q Consensus 142 -~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~----~~~~~~ivviNK~D~ 215 (496)
.+.+.|+||||+++|.......++.+|++|+|+|++.... |. ...+.+ ..+.. .+.| +++|.||+|+
T Consensus 60 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~s---f~---~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl 132 (211)
T PLN03118 60 KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET---FT---NLSDVWGKEVELYSTNQDCV-KMLVGNKVDR 132 (211)
T ss_pred EEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 3678999999999998877788889999999999987521 00 111111 11221 2456 7889999998
Q ss_pred CCCC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.... ... ++...+.+.. .++++++||++|.|++++..
T Consensus 133 ~~~~~i~~-------~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 133 ESERDVSR-------EEGMALAKEH------GCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred cccCccCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 4321 111 1122223332 35789999999999998754
No 193
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.63 E-value=4.5e-15 Score=135.25 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=104.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++..+|+++|..|||||||+++|. .+.+. ..-.|.......+...+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~--~~~~~--------------------------------~~~pT~g~~~~~i~~~~ 57 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLK--NGEIS--------------------------------ETIPTIGFNIEEIKYKG 57 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHH--SSSEE--------------------------------EEEEESSEEEEEEEETT
T ss_pred CcEEEEEEECCCccchHHHHHHhh--hcccc--------------------------------ccCcccccccceeeeCc
Confidence 677999999999999999999984 11111 12235555566778899
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~ 218 (496)
..+.++|.+|+..+...+......+|++|+|||+++..- + ...++.+..+.. .++| ++|++||+|++.+
T Consensus 58 ~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~---l---~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~ 130 (175)
T PF00025_consen 58 YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPER---L---QEAKEELKELLNDPELKDIP-ILILANKQDLPDA 130 (175)
T ss_dssp EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGG---H---HHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTS
T ss_pred EEEEEEeccccccccccceeeccccceeEEEEeccccee---e---cccccchhhhcchhhcccce-EEEEeccccccCc
Confidence 999999999998888888788889999999999987420 0 133444333222 2466 8999999998543
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.+.+.+ ...+. +..+. ....+.++++||.+|+|+.+.
T Consensus 131 -~~~~~i---~~~l~--l~~l~--~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 131 -MSEEEI---KEYLG--LEKLK--NKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp -STHHHH---HHHTT--GGGTT--SSSCEEEEEEBTTTTBTHHHH
T ss_pred -chhhHH---Hhhhh--hhhcc--cCCceEEEeeeccCCcCHHHH
Confidence 233222 22111 11221 124678999999999999884
No 194
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=6.2e-15 Score=137.20 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=91.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--eE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 144 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~ 144 (496)
+|+++|++|+|||||+++|+.. .... ....++.+.....+.+.+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYD--TFEP------------------------------KYRRTVEEMHRKEYEVGGVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--CCCc------------------------------cCCCchhhheeEEEEECCEEEE
Confidence 5899999999999999999632 1110 001121122223344445 67
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCc
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~~~ 220 (496)
+.|+||||+.+|.......+..+|++|+|+|++++.. ++ .....+..+.. .++| +|+|+||+|+....
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~- 120 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPES---FE---EVERLREEILEVKEDKFVP-IVVVGNKADSLEEE- 120 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEEcccccccc-
Confidence 8999999999987766667889999999999987521 00 11111111111 3577 89999999984321
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.....+... .... ..+ ..+++++||++|.|+.++.+
T Consensus 121 ~~v~~~~~~----~~~~-~~~----~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 121 RQVPAKDAL----STVE-LDW----NCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred ccccHHHHH----HHHH-hhc----CCcEEEecCCCCCCHHHHHH
Confidence 110111111 1111 111 24689999999999998643
No 195
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.62 E-value=2.7e-15 Score=139.59 Aligned_cols=151 Identities=21% Similarity=0.207 Sum_probs=97.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
+.|+++|..++|||||+.++.. +.+. .+..+.++.+.....+..++ .
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~--~~f~-----------------------------~~~~~Ti~~~~~~~~i~~~~~~v 49 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTD--DTFC-----------------------------EACKSGVGVDFKIKTVELRGKKI 49 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHh--CCCC-----------------------------CcCCCcceeEEEEEEEEECCEEE
Confidence 3689999999999999999852 2211 11112334454444566655 6
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~~~ 220 (496)
.+.|+||||++.|...+...++.||++|+|+|.++... |+ .....+..+.. -++| +|+|.||+|+...
T Consensus 50 ~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~S---f~---~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~-- 120 (202)
T cd04120 50 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLPKWMKMIDKYASEDAE-LLLVGNKLDCETD-- 120 (202)
T ss_pred EEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccc--
Confidence 78999999999998877778899999999999988632 11 11122222332 2466 8999999998321
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.+ . ...+...+.+.. ...+++.+||++|.|+.++..
T Consensus 121 ~~--v--~~~~~~~~a~~~-----~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 121 RE--I--SRQQGEKFAQQI-----TGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred cc--c--CHHHHHHHHHhc-----CCCEEEEecCCCCCCHHHHHH
Confidence 10 0 011122222222 135689999999999998653
No 196
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.62 E-value=1.8e-15 Score=137.42 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=94.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+++|.... .. ......|.+ ...+...+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~--~~----------------------------~~~~t~g~~----~~~i~~~~ 57 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASED--IS----------------------------HITPTQGFN----IKTVQSDG 57 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCC--Cc----------------------------ccCCCCCcc----eEEEEECC
Confidence 336899999999999999999995210 00 000112322 23455668
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHH----HHHcCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~----~~~~~~~~~ivviNK~D~~~~ 218 (496)
..+.++|+||+..+.......+..+|++++|+|+..... + ......+.. ....++| +++++||+|+...
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 130 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKR---L---EEAGAELVELLEEEKLAGVP-VLVFANKQDLATA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC
Confidence 899999999998887777777889999999999986321 0 011222211 1224577 8899999998432
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. ..+++.+. +.-..+. ....+++++||++|+|++++
T Consensus 131 ~----~~~~i~~~----l~~~~~~-~~~~~~~~~Sa~~~~gi~~~ 166 (173)
T cd04155 131 A----PAEEIAEA----LNLHDLR-DRTWHIQACSAKTGEGLQEG 166 (173)
T ss_pred C----CHHHHHHH----cCCcccC-CCeEEEEEeECCCCCCHHHH
Confidence 1 12222221 1111111 12346889999999999985
No 197
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.62 E-value=4.6e-15 Score=137.35 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=92.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|.+|+|||||+++|+.. ..... +.....|. +.....+..++ .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~--~~~~~--------------------------~~~~t~~~--~~~~~~~~~~~~~~ 50 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHH--RFLVG--------------------------PYQNTIGA--AFVAKRMVVGERVV 50 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CcCCc--------------------------Ccccceee--EEEEEEEEECCEEE
Confidence 48999999999999999999631 11100 00000111 12222344444 4
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCcc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~~~~~~~ 221 (496)
.+.|+||||.+.|-......+..+|++|+|+|.+.... + ......+..+... +.| +++|.||+|+......
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~ 123 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS---F---ERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRS 123 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhcCCCCC-EEEEEEcccccccccc
Confidence 56799999998886665566779999999999986521 0 0111222333332 567 8999999998432100
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.... ...++..+.... ..+++++||++|.|++++.+
T Consensus 124 ~~~v--~~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 124 LRQV--DFHDVQDFADEI------KAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred cCcc--CHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 0010 012233333333 24689999999999998654
No 198
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.62 E-value=7.8e-15 Score=133.00 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=91.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|++|+|||||+++++. +.. ..+..+.+..+.....+..++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~--~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA--GRF-----------------------------PERTEATIGVDFRERTVEIDGER 50 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh--CCC-----------------------------CCccccceeEEEEEEEEEECCeE
Confidence 47999999999999999999952 111 111112233344444455555
Q ss_pred eEEEEEeCCCCcccHhH-HhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCC
Q 010985 143 TRFTILDAPGHKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~-~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~ 217 (496)
..+.++||||+++|... .......+|++++|+|++.+..- ......+..+.. -++| +++|.||+|+..
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 123 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASF------HSLPSWIEECEQHSLPNEVP-RILVGNKCDLRE 123 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHH------HhHHHHHHHHHHhcCCCCCC-EEEEEECccchh
Confidence 67899999999888643 34456789999999999876421 112222223332 2467 899999999842
Q ss_pred CC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccc---ccccccc
Q 010985 218 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM---GLNMKTR 263 (496)
Q Consensus 218 ~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~---g~gi~~l 263 (496)
.. .+. .+...+.+.. .++++.+||++ +.|+.++
T Consensus 124 ~~~~~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 124 QIQVPT-------DLAQRFADAH------SMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred hcCCCH-------HHHHHHHHHc------CCcEEEEeccCCcCCCCHHHH
Confidence 21 111 1112222222 35799999999 6666654
No 199
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.62 E-value=2.2e-15 Score=141.67 Aligned_cols=119 Identities=24% Similarity=0.260 Sum_probs=86.9
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 60 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 60 ~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
....+.++|+++|.||+|||||.|.|++..-... .+...+|+......+.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~v------------------------------S~K~~TTr~~ilgi~t 116 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV------------------------------SRKVHTTRHRILGIIT 116 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccc------------------------------cccccceeeeeeEEEe
Confidence 3456789999999999999999999975433322 2336688888888899
Q ss_pred eCCeEEEEEeCCC------Ccc------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-cCCceE
Q 010985 140 TETTRFTILDAPG------HKS------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKL 206 (496)
Q Consensus 140 ~~~~~i~liDtpG------~~~------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~~~~~~ 206 (496)
.+..++.|+|||| |+. +..+...++..||.+++|+|++..-. ...-..+..+.. ..+| -
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~-------~l~p~vl~~l~~ys~ip-s 188 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRT-------PLHPRVLHMLEEYSKIP-S 188 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcC-------ccChHHHHHHHHHhcCC-c
Confidence 9999999999999 222 24456677889999999999985311 122333444443 3578 4
Q ss_pred EEEEeeccCC
Q 010985 207 LLVVNKMDDH 216 (496)
Q Consensus 207 ivviNK~D~~ 216 (496)
|+|+||+|..
T Consensus 189 ~lvmnkid~~ 198 (379)
T KOG1423|consen 189 ILVMNKIDKL 198 (379)
T ss_pred eeeccchhcc
Confidence 6899999973
No 200
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.62 E-value=3.8e-15 Score=134.70 Aligned_cols=148 Identities=15% Similarity=0.171 Sum_probs=94.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|.+++|||||+++|... ... ....|+......+...+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~-------------------------------~~~~t~g~~~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK-------------------------------KVAPTVGFTPTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc-------------------------------cccCcccceEEEEEECCEEEE
Confidence 4799999999999999998521 110 011222222345666789999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCccH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~~~~~ 222 (496)
++||||+..|.......+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+.... +.
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-~~ 118 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDR---V---QEVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-LG 118 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhH---H---HHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC-CH
Confidence 99999999988877888899999999999987521 0 112222322221 3566 89999999995432 22
Q ss_pred HHHHHHHHH--HHHHHHhcCCCccCCeeEEeeccccc------cccccc
Q 010985 223 ERYDEIESK--MTPFLKASGYNVKKDVQFLPISGLMG------LNMKTR 263 (496)
Q Consensus 223 ~~~~~i~~~--l~~~l~~~~~~~~~~~~~ipiSa~~g------~gi~~l 263 (496)
+ ++.+. +..+.++.+ ..++++++||++| .|+.+-
T Consensus 119 ~---~i~~~~~l~~~~~~~~----~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 119 A---DVIEYLSLEKLVNENK----SLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred H---HHHHhcCcccccCCCC----ceEEEEEeEceeCCCCccccCHHHH
Confidence 2 22221 111111111 2467999999998 677663
No 201
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.62 E-value=4.4e-15 Score=134.94 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|++++|||||+++++. +...... ..+..+.....+..++ +
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~--~~~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 48 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAN--DAFPEEY------------------------------VPTVFDHYAVSVTVGGKQY 48 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCCCC------------------------------CCceeeeeEEEEEECCEEE
Confidence 4899999999999999999853 2111100 1111122122233333 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e-~~~~~~~--~~~~~~ivviNK~D~~~~~~ 220 (496)
.+.|+||||+.+|..........+|++|+|+|...... |+ ...+ .+..+.. .+.| +++|.||+|+.....
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~ 121 (174)
T cd04135 49 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---FQ---NVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPK 121 (174)
T ss_pred EEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChh
Confidence 57899999999987766666789999999999987521 00 1111 1122222 3567 889999999842211
Q ss_pred cHHHHH------HHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 221 SKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 221 ~~~~~~------~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
...... -..++...+.+..++ .+++.+||++|.|++++.
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~~f 166 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIGA-----HCYVECSALTQKGLKTVF 166 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCC-----CEEEEecCCcCCCHHHHH
Confidence 110000 001233344455543 368999999999999863
No 202
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.62 E-value=6.5e-15 Score=130.86 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=92.6
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEE
Q 010985 68 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 147 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~l 147 (496)
|+++|++|+|||||+++|.... .. .+..+.+.. ....+...+..+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~--~~-----------------------------~~~~~t~~~--~~~~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ--FS-----------------------------EDTIPTVGF--NMRKVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC--CC-----------------------------cCccCCCCc--ceEEEEECCEEEEE
Confidence 7999999999999999995211 00 000122222 22234556788999
Q ss_pred EeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCCccHH
Q 010985 148 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 148 iDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~----~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
+||||+..|...+...+..+|++++|+|++.... + .+..+.+..+. ..+.| +++|+||+|+....
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~---- 117 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTA---L---EAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGAL---- 117 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCc----
Confidence 9999999998888888899999999999986421 0 12222232222 13567 88999999984321
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 224 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 224 ~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
..+++...+. +.... ...++++++|+++|.|++++
T Consensus 118 ~~~~~~~~~~--~~~~~---~~~~~~~~~Sa~~~~gi~~l 152 (159)
T cd04159 118 SVDELIEQMN--LKSIT---DREVSCYSISCKEKTNIDIV 152 (159)
T ss_pred CHHHHHHHhC--ccccc---CCceEEEEEEeccCCChHHH
Confidence 1112211111 01110 12468899999999999884
No 203
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.61 E-value=1.3e-14 Score=135.04 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=97.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
..++|+++|.+|+|||||+++|+.. .+. .+..+.+..+.....+..++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 53 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADN--TFS-----------------------------GSYITTIGVDFKIRTVEINGE 53 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCcCccccceeEEEEEEECCE
Confidence 4689999999999999999999521 110 00012222333334444444
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCC
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~~~~~ 219 (496)
..+.|+||||++.|.......+..+|++|+|+|++.... |+ ...+.+..+... .+| ++||.||+|+....
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~ 126 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---FV---NVKRWLQEIEQNCDDVC-KVLVGNKNDDPERK 126 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 568899999999988777777889999999999987531 11 122222222222 355 88999999984321
Q ss_pred -ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 220 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 -~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.+. .+...+.+.. ..+++++||++|.|+.++.+
T Consensus 127 ~~~~-------~~~~~~~~~~------~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 127 VVET-------EDAYKFAGQM------GISLFETSAKENINVEEMFN 160 (199)
T ss_pred ccCH-------HHHHHHHHHc------CCEEEEEECCCCcCHHHHHH
Confidence 111 2222333333 35799999999999998654
No 204
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.61 E-value=1.5e-14 Score=132.72 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=95.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|..++|||||+.+++. +.... +..+-+..+.....+..++ .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~--~~f~~-----------------------------~~~~T~g~~~~~~~i~~~~~~~ 49 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE--GEFDE-----------------------------DYIQTLGVNFMEKTISIRGTEI 49 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCccceEEEEEEEEECCEEE
Confidence 4799999999999999999852 11110 0111122233223444554 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCcc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~~~~~~~ 221 (496)
.+.++||+|++.|.......+..||++++|+|.++.... + ...+.+..+... ... .|+|.||+|+... .+
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~---~---~i~~~~~~~~~~~~~~~-pilVgnK~Dl~~~-~~ 121 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTL---N---SIKEWYRQARGFNKTAI-PILVGTKYDLFAD-LP 121 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHH---H---HHHHHHHHHHHhCCCCC-EEEEEEchhcccc-cc
Confidence 689999999999977666778899999999999875321 0 111222333332 223 2578999998421 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.+....+.++...+.+..+ .+++++||++|.|++++..
T Consensus 122 ~~~~~~~~~~~~~~a~~~~------~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 122 PEEQEEITKQARKYAKAMK------APLIFCSTSHSINVQKIFK 159 (182)
T ss_pred chhhhhhHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 1111122334444444443 5789999999999999754
No 205
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.61 E-value=4.2e-15 Score=159.13 Aligned_cols=140 Identities=21% Similarity=0.200 Sum_probs=96.8
Q ss_pred ecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEEEeCC
Q 010985 72 GHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAP 151 (496)
Q Consensus 72 G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDtp 151 (496)
|.+|+|||||+|+|.+..- .....+|+|++.....+++++..++++|||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-------------------------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-------------------------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-------------------------------eecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 8999999999999952210 111238999999988888899999999999
Q ss_pred CCcccHhH--------HhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHH
Q 010985 152 GHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 152 G~~~~~~~--------~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
|+.++... .......+|++++|+|++... ...+....+...++| +++|+||+|+....
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le---------r~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~---- 115 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE---------RNLYLTLQLLELGIP-MILALNLVDEAEKK---- 115 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch---------hhHHHHHHHHhcCCC-EEEEEehhHHHHhC----
Confidence 98876332 111234789999999998641 333334445567888 89999999983211
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 224 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 224 ~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... .+.+.+.+.+ +.+++++||++|.|++++.+
T Consensus 116 ~i~---~d~~~L~~~l------g~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 116 GIR---IDEEKLEERL------GVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred CCh---hhHHHHHHHc------CCCEEEEECCCCCCHHHHHH
Confidence 111 1122222333 35799999999999998644
No 206
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=5.4e-15 Score=132.22 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=92.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
.+|+++|.+|+|||||+++|+...-. . ...+.++.+.....+...+ .
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN--E-----------------------------KHESTTQASFFQKTVNIGGKRI 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--C-----------------------------CcCCccceeEEEEEEEECCEEE
Confidence 48999999999999999999632110 0 0011222233333333333 4
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC-C
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV-N 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~-~ 219 (496)
.+.++||||+..|.......+..+|++++|+|.+++... ......+..+.. .++| +++|+||+|+... .
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~ 122 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSF------QKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRV 122 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCCe-EEEEEECcccccccC
Confidence 688999999988876666667899999999999876321 011111122222 1456 8899999998422 1
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
...+ ++..+.+.. ..+++++|+++|.|++++.
T Consensus 123 ~~~~-------~~~~~~~~~------~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 123 VSKS-------EAEEYAKSV------GAKHFETSAKTGKGIEELF 154 (162)
T ss_pred CCHH-------HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 1121 222233333 3468999999999999853
No 207
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.61 E-value=3.7e-14 Score=134.40 Aligned_cols=167 Identities=19% Similarity=0.226 Sum_probs=115.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
...+...|+++|++|+|||||++.|+...... ......|+ +. .+..
T Consensus 35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------------------------~~~~~~g~-i~----i~~~ 80 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------------------------NISDIKGP-IT----VVTG 80 (225)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------------------------cccccccc-EE----EEec
Confidence 35667889999999999999999996432110 00012332 11 1223
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
.+..++++||||+- ..++..+..+|++++|+|+..+.. .++.+.+..+...+.|.+|+|+||+|+..
T Consensus 81 ~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~-------~~~~~i~~~l~~~g~p~vi~VvnK~D~~~--- 147 (225)
T cd01882 81 KKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFE-------METFEFLNILQVHGFPRVMGVLTHLDLFK--- 147 (225)
T ss_pred CCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCC-------HHHHHHHHHHHHcCCCeEEEEEeccccCC---
Confidence 67889999999963 677777899999999999998742 46777778888888886677999999842
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCC
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEI 286 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~ 286 (496)
..+.++++..+++..+...-+. ..+++++||++.-. .||-++..|+..|+.+..
T Consensus 148 ~~~~~~~~~~~l~~~~~~~~~~---~~ki~~iSa~~~~~---------~~~~e~~~~~r~i~~~~~ 201 (225)
T cd01882 148 KNKTLRKTKKRLKHRFWTEVYQ---GAKLFYLSGIVHGR---------YPKTEIHNLARFISVMKF 201 (225)
T ss_pred cHHHHHHHHHHHHHHHHHhhCC---CCcEEEEeeccCCC---------CCHHHHHHHHHHHHhCCC
Confidence 2344666667776644321111 35899999987632 456666667778877654
No 208
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.61 E-value=3e-15 Score=135.97 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=92.0
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-CeEEEEE
Q 010985 70 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 148 (496)
Q Consensus 70 i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~~~i~li 148 (496)
++|++|+|||||+++|....- .....+++|++.....+.+. +..+.|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-------------------------------KVANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-------------------------------cccCCCceeecCcceEEEcCCCCeEEEE
Confidence 589999999999999953211 01112567777777777777 8999999
Q ss_pred eCCCCcc-------cHhHHhhccccCCEEEEEEeCCCCccc---cccCCCCchHHHHHHHH----------HcCCceEEE
Q 010985 149 DAPGHKS-------YVPNMISGASQADIGVLVISARKGEFE---TGFEKGGQTREHVMLAK----------TLGVTKLLL 208 (496)
Q Consensus 149 DtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~e---~~~~~~~~t~e~~~~~~----------~~~~~~~iv 208 (496)
||||+.+ ....+...+..+|++++|+|+...... ..+ .........+. ..+.| +++
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~iv 125 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPL---EDYEILNAELKLYDLETILGLLTAKP-VIY 125 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHH---HHHHHHHHHHHHhhhhhHHHHHhhCC-eEE
Confidence 9999743 233445667789999999999875100 000 01111111111 13567 889
Q ss_pred EEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 209 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 209 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
|+||+|+... ....+.. ....... ...+++++||++|.|+.++.
T Consensus 126 v~NK~Dl~~~----~~~~~~~--~~~~~~~------~~~~~~~~Sa~~~~gl~~l~ 169 (176)
T cd01881 126 VLNKIDLDDA----EELEEEL--VRELALE------EGAEVVPISAKTEEGLDELI 169 (176)
T ss_pred EEEchhcCch----hHHHHHH--HHHHhcC------CCCCEEEEehhhhcCHHHHH
Confidence 9999998422 1111111 1111111 23569999999999998853
No 209
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.61 E-value=4.2e-15 Score=154.97 Aligned_cols=146 Identities=21% Similarity=0.270 Sum_probs=102.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..+|+++|+||+|||||+|+|. |......+| +|+|++.....+...++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LT---------------------G~~q~VgNw----------pGvTVEkkeg~~~~~~~~ 51 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALT---------------------GANQKVGNW----------PGVTVEKKEGKLKYKGHE 51 (653)
T ss_pred cceEEEecCCCccHHHHHHHHh---------------------ccCceecCC----------CCeeEEEEEEEEEecCce
Confidence 3569999999999999999995 333333455 999999999999999999
Q ss_pred EEEEeCCCCcccH----hH--Hhhc--cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 010985 145 FTILDAPGHKSYV----PN--MISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 145 i~liDtpG~~~~~----~~--~~~~--~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~ 216 (496)
+.++|.||.-.+. .+ +... -..+|++|.||||+.-+ .......++..+|+| +|+++|++|..
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe---------RnLyltlQLlE~g~p-~ilaLNm~D~A 121 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE---------RNLYLTLQLLELGIP-MILALNMIDEA 121 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH---------HHHHHHHHHHHcCCC-eEEEeccHhhH
Confidence 9999999943331 11 1111 24789999999998531 222233445667999 99999999973
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 217 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
... -+.-+...+-+.+ .+|++|+||++|.|++++.
T Consensus 122 ~~~-------Gi~ID~~~L~~~L------GvPVv~tvA~~g~G~~~l~ 156 (653)
T COG0370 122 KKR-------GIRIDIEKLSKLL------GVPVVPTVAKRGEGLEELK 156 (653)
T ss_pred Hhc-------CCcccHHHHHHHh------CCCEEEEEeecCCCHHHHH
Confidence 110 1111112222223 4689999999999998853
No 210
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.61 E-value=5e-15 Score=117.34 Aligned_cols=81 Identities=40% Similarity=0.636 Sum_probs=76.8
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeE
Q 010985 295 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 372 (496)
Q Consensus 295 ~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~v 372 (496)
|||+|.++| ++.|++++|+|++|++++||++.++|++...+|++|+.+++++++|.|||.|+++|++++..++++|++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 689999999 578899999999999999999999999999999999999999999999999999999988889999999
Q ss_pred Eec
Q 010985 373 LSS 375 (496)
Q Consensus 373 l~~ 375 (496)
|+.
T Consensus 81 l~~ 83 (83)
T cd03696 81 LSS 83 (83)
T ss_pred EcC
Confidence 873
No 211
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.61 E-value=2.1e-14 Score=128.95 Aligned_cols=147 Identities=17% Similarity=0.149 Sum_probs=90.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
.+|+++|.+|+|||||+++++. +...... ..+..+.....+..++ .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 49 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS--GTFIEKY------------------------------DPTIEDFYRKEIEVDSSPS 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCCC------------------------------CCchhheEEEEEEECCEEE
Confidence 6899999999999999998852 2211100 0111111122233333 4
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~~ 219 (496)
.+.|+||||++.|.......+..+|++|+|+|.++... + ....+.+..+.. .++| +++|.||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~ 122 (163)
T cd04176 50 VLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQT---F---QDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESER 122 (163)
T ss_pred EEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcC
Confidence 57889999999997777777889999999999987521 0 011222222222 3567 88999999983211
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.. .. .+...+.+.. ..+++++||++|.|+.++
T Consensus 123 -~~-~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 123 -EV-SS----AEGRALAEEW------GCPFMETSAKSKTMVNEL 154 (163)
T ss_pred -cc-CH----HHHHHHHHHh------CCEEEEecCCCCCCHHHH
Confidence 10 00 1112222222 247899999999999985
No 212
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=1.2e-14 Score=131.30 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=92.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|+.|+|||||+++|+. +...... + ......|+.. .+......+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~--~~~~~~~-------------------------~-~~~~~~~~~~---~~~~~~~~~ 49 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVS--EEFPENV-------------------------P-RVLPEITIPA---DVTPERVPT 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CcCCccC-------------------------C-CcccceEeee---eecCCeEEE
Confidence 4899999999999999999963 2111000 0 0001122111 122345779
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEeeccCCCCCccH
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e-~~~~~~~--~~~~~~ivviNK~D~~~~~~~~ 222 (496)
.++||||+..+...+...+..+|++++|+|++.+.. + .+..+ .+..+.. .+.| +++|+||+|+.... ..
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~---~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~-~~ 121 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST---L---ERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGS-SQ 121 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEchhccccc-ch
Confidence 999999999887777777899999999999987532 0 01111 1222332 2566 89999999994321 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 223 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. ...+++..+.+... ...+++++||++|.|++++.
T Consensus 122 ~---~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 122 A---GLEEEMLPIMNEFR----EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred h---HHHHHHHHHHHHHh----cccEEEEeccccccCHHHHH
Confidence 1 11222222222221 01368999999999999853
No 213
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.61 E-value=6.6e-15 Score=138.61 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=96.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|.+++|||||+++|+. +.+.. .-.|+........+..+.+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~--~~f~~--------------------------------~~~Tig~~~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYME--RRFKD--------------------------------TVSTVGGAFYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhc--CCCCC--------------------------------CCCccceEEEEEEeeEEEE
Confidence 4799999999999999999952 11100 1122222223334456789
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCCcc-
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS- 221 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~~~~- 221 (496)
.|+||||++.|-......++.+|++|+|+|.+.... |+ .....+..+.. .++| +|+|.||+|+...+-.
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~S---f~---~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~ 119 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQS---LE---ELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALA 119 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECcccccccccc
Confidence 999999999997777777889999999999987521 10 11111222222 2356 8999999998431000
Q ss_pred -----------HH-HHHHHHHHHHHHHHhcCC--------CccCCeeEEeeccccccccccccc
Q 010985 222 -----------KE-RYDEIESKMTPFLKASGY--------NVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 222 -----------~~-~~~~i~~~l~~~l~~~~~--------~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.+ ...-..++...+.++.+. .+....+++.+||++|.|+.++..
T Consensus 120 ~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~ 183 (220)
T cd04126 120 GQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFE 183 (220)
T ss_pred cccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHH
Confidence 00 000111223333333320 111135799999999999998754
No 214
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=5.8e-15 Score=133.79 Aligned_cols=150 Identities=14% Similarity=0.078 Sum_probs=92.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++.++|+++|.+|+|||||+++++. +.+.. .+-.+-+..+.....+..++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~--~~f~~----------------------------~~~~~T~~~~~~~~~~~~~~ 51 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFSL----------------------------NAYSPTIKPRYAVNTVEVYG 51 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC--CCCCc----------------------------ccCCCccCcceEEEEEEECC
Confidence 5679999999999999999999952 21110 00001111111222333444
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHH----cCCceEEEEEeeccC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT----LGVTKLLLVVNKMDD 215 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~----~~~~~~ivviNK~D~ 215 (496)
..+.++|++|.+.|.......+..+|++|+|+|++.. .+.+.+ ..... .++| +++|+||+|+
T Consensus 52 ~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~----------~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl 120 (169)
T cd01892 52 QEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDP----------KSFSYCAEVYKKYFMLGEIP-CLFVAAKADL 120 (169)
T ss_pred eEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCH----------HHHHHHHHHHHHhccCCCCe-EEEEEEcccc
Confidence 5688999999988866666667899999999999775 222221 22222 2567 8999999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.... . . ...+...+.+.+++. .++++||++|.|++++.
T Consensus 121 ~~~~--~-~---~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 121 DEQQ--Q-R---YEVQPDEFCRKLGLP-----PPLHFSSKLGDSSNELF 158 (169)
T ss_pred cccc--c-c---cccCHHHHHHHcCCC-----CCEEEEeccCccHHHHH
Confidence 3221 0 0 011122233344432 35899999999999854
No 215
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.61 E-value=4.6e-15 Score=133.37 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=91.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe---CC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---ET 142 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~---~~ 142 (496)
++|+++|.+++|||||+++|+....... .+..+.+..+.....+.. ..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 51 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFP-----------------------------KNYLMTTGCDFVVKEVPVDTDNT 51 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC-----------------------------ccCCCceEEEEEEEEEEeCCCCE
Confidence 4899999999999999999853211111 011111222222222222 34
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCC-
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN- 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~--~~~~~~ivviNK~D~~~~~- 219 (496)
..+.++||||++.|-......+..+|++++|+|.+..... ......+..+.. .++| +++|+||+|+....
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASF------ENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAE 124 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhCCCCC-EEEEEECcccccccC
Confidence 7899999999988877777778899999999999875210 011112222222 2467 88999999984221
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
...... ..+.... ..+++++||++|.|+.++.
T Consensus 125 ~~~~~~-------~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 156 (164)
T cd04101 125 VTDAQA-------QAFAQAN------QLKFFKTSALRGVGYEEPF 156 (164)
T ss_pred CCHHHH-------HHHHHHc------CCeEEEEeCCCCCChHHHH
Confidence 111111 1111222 3478999999999999853
No 216
>PTZ00369 Ras-like protein; Provisional
Probab=99.60 E-value=4.5e-15 Score=137.08 Aligned_cols=152 Identities=20% Similarity=0.152 Sum_probs=93.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
..++|+++|.+|+|||||+++++.. ...... ....|.+.. ....+.....
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~--~~~~~~---------------------------~~t~~~~~~-~~~~~~~~~~ 53 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQN--HFIDEY---------------------------DPTIEDSYR-KQCVIDEETC 53 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC--CCCcCc---------------------------CCchhhEEE-EEEEECCEEE
Confidence 3589999999999999999998632 111000 000011110 1111222335
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~~ 219 (496)
.+.|+||||+++|.......+..+|++|+|+|++.... |+ .....+..+.. -++| +++|.||+|+....
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSS---FE---EIASFREQILRVKDKDRVP-MILVGNKCDLDSER 126 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 68899999999998877778889999999999987532 10 12222222222 1566 89999999984221
Q ss_pred -ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 220 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 -~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
...+ +...+.+.. ..+++.+||++|.|+.++..
T Consensus 127 ~i~~~-------~~~~~~~~~------~~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 127 QVSTG-------EGQELAKSF------GIPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred ccCHH-------HHHHHHHHh------CCEEEEeeCCCCCCHHHHHH
Confidence 1111 112222322 24799999999999998643
No 217
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.60 E-value=2.2e-14 Score=132.23 Aligned_cols=151 Identities=15% Similarity=0.197 Sum_probs=99.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
..++|+++|..++|||||+.++.. +... .+..+.++.+.....+..++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~i~~~~~ 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD--GSTE-----------------------------SPYGYNMGIDYKTTTILLDGR 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCCC-----------------------------CCCCCcceeEEEEEEEEECCE
Confidence 458999999999999999999852 2111 11112334444334444444
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCC-
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV- 218 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~--~~~~~~ivviNK~D~~~~- 218 (496)
..+.|+||||+++|-.......+.+|++|||+|.+.... |+ ..+..+..+.. -++| +|+|.||+|+...
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~S---f~---~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~ 126 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWS---FD---GIDRWIKEIDEHAPGVP-KILVGNRLHLAFKR 126 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccchhcc
Confidence 678899999999988777777789999999999987532 11 12222222322 2566 8999999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
..+ .++.+.+.+.. ..+++.+||++|.|++++..
T Consensus 127 ~v~-------~~~~~~~a~~~------~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 127 QVA-------TEQAQAYAERN------GMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred CCC-------HHHHHHHHHHc------CCEEEEecCCCCCCHHHHHH
Confidence 111 22334444443 35799999999999998644
No 218
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.60 E-value=9.7e-15 Score=129.35 Aligned_cols=147 Identities=19% Similarity=0.201 Sum_probs=95.7
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-CeEEEEE
Q 010985 70 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 148 (496)
Q Consensus 70 i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~~~i~li 148 (496)
++|++|+|||||+++|....... ....+++|.+.....+... ...+.|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------------------------------VSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc------------------------------cCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 58999999999999996322110 1122556666666665555 7889999
Q ss_pred eCCCCcccH-------hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 149 DAPGHKSYV-------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 149 DtpG~~~~~-------~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
||||+.++. ..+...+..+|++++|+|+..+.. .............+.| +++|+||+|+...+
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~-------~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~-- 120 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD-------EEEEKLLELLRERGKP-VLLVLNKIDLLPEE-- 120 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCe-EEEEEEccccCChh--
Confidence 999987764 334446789999999999998742 1222224455556777 89999999984322
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.......... ... .. ....+++++|++++.|+.++
T Consensus 121 --~~~~~~~~~~-~~~-~~---~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 121 --EEEELLELRL-LIL-LL---LLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred --hHHHHHHHHH-hhc-cc---ccCCceEEEeeeccCCHHHH
Confidence 1111111000 111 11 12568999999999999875
No 219
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.60 E-value=6.3e-15 Score=133.30 Aligned_cols=149 Identities=18% Similarity=0.131 Sum_probs=91.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--Ce
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~ 143 (496)
.+|+++|.+|+|||||+++++.. ...... ..++.+.....+..+ ..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~--~~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 49 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN--VFIESY------------------------------DPTIEDSYRKQVEIDGRQC 49 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCCccc------------------------------CCcchheEEEEEEECCEEE
Confidence 58999999999999999999521 111000 001111111222333 35
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~----~~~~~~~ivviNK~D~~~~~ 219 (496)
.+.++||||+++|.......+..+|++++|+|.+.... ++ ........+. ..+.| ++++.||+|+....
T Consensus 50 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~ 122 (168)
T cd04177 50 DLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEAS---LN---ELGELREQVLRIKDSDNVP-MVLVGNKADLEDDR 122 (168)
T ss_pred EEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCC-EEEEEEChhccccC
Confidence 78899999999998777777889999999999987521 00 1111111111 23577 88999999984221
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. ..++...+.+..+ ..+++++||++|.|+.++.
T Consensus 123 --~~----~~~~~~~~~~~~~-----~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 123 --QV----SREDGVSLSQQWG-----NVPFYETSARKRTNVDEVF 156 (168)
T ss_pred --cc----CHHHHHHHHHHcC-----CceEEEeeCCCCCCHHHHH
Confidence 10 1111222223322 2579999999999999853
No 220
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.60 E-value=8e-15 Score=134.09 Aligned_cols=148 Identities=18% Similarity=0.107 Sum_probs=91.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--Ce
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~ 143 (496)
.+|+++|++|+|||||+++|+.. ...... ..++.+.....+... ++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~--~~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 49 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG--HFVESY------------------------------YPTIENTFSKIIRYKGQDY 49 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCcccc------------------------------CcchhhhEEEEEEECCEEE
Confidence 58999999999999999999632 111000 111111112223333 35
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHH---cCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~---~~~~~~ivviNK~D~~~~~ 219 (496)
.+.|+||||+.+|.......+..+|++++|+|.+..... + .....+ .++.. .+.| +|+|+||+|+....
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~ 122 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSF---E---VVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQR 122 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHH---H---HHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcC
Confidence 678999999999877777778899999999999875310 0 111111 22222 2457 88999999984211
Q ss_pred -ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 220 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 -~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+..+ +...+.+.. ..+++++||++|.|+.++..
T Consensus 123 ~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 123 QVSTE-------EGKELAESW------GAAFLESSARENENVEEAFE 156 (180)
T ss_pred ccCHH-------HHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 1111 122222332 24789999999999998644
No 221
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.60 E-value=1.1e-14 Score=131.24 Aligned_cols=148 Identities=15% Similarity=0.079 Sum_probs=92.7
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEE
Q 010985 68 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 147 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~l 147 (496)
|+++|.+|+|||||+++|... ..... ...|+......+...+..+.|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~--~~~~~-------------------------------~~pt~g~~~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE--RSLES-------------------------------VVPTTGFNSVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCccc-------------------------------ccccCCcceEEEeeCCeEEEE
Confidence 789999999999999999521 11000 001111122345567789999
Q ss_pred EeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCCccHHHH
Q 010985 148 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKERY 225 (496)
Q Consensus 148 iDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~--~~~~~~ivviNK~D~~~~~~~~~~~ 225 (496)
+||||+.+|...+...+..+|++|+|+|+++... + ...++.+..+.. -++| +++|.||+|+.... . .
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s---~---~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-~---~ 117 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSER---L---PLARQELHQLLQHPPDLP-LVVLANKQDLPAAR-S---V 117 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCC-C---H
Confidence 9999999998877788899999999999987521 0 112222222221 3566 89999999984331 1 2
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEeecccc------ccccccc
Q 010985 226 DEIESKMTPFLKASGYNVKKDVQFLPISGLM------GLNMKTR 263 (496)
Q Consensus 226 ~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~------g~gi~~l 263 (496)
.++.+. +....+.....++++++||++ ++|+.++
T Consensus 118 ~~i~~~----~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 118 QEIHKE----LELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred HHHHHH----hCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 222221 111111112356789999888 8888774
No 222
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.59 E-value=7.2e-15 Score=131.16 Aligned_cols=146 Identities=20% Similarity=0.149 Sum_probs=92.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--CeE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 144 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~ 144 (496)
+|+++|++|+|||||+++|+... .... .+.++.+.....+... ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEE------------------------------YDPTIEDSYRKTIVVDGETYT 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcC------------------------------cCCChhHeEEEEEEECCEEEE
Confidence 58999999999999999996321 1100 0112222222333344 467
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-H---cCCceEEEEEeeccCCCCCc
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T---LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~---~~~~~~ivviNK~D~~~~~~ 220 (496)
+.++|+||+.++-......+..+|++++|+|.+..... ......+..+. . .+.| +++|+||+|+....
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~- 120 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESF------EEIKGYREQILRVKDDEDIP-IVLVGNKCDLENER- 120 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccc-
Confidence 89999999998877777778899999999998875311 11222222222 2 2456 89999999984311
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. ...+++..+.+..+ .+++++|+++|.|+.++
T Consensus 121 -~----~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~l 152 (160)
T cd00876 121 -Q----VSKEEGKALAKEWG------CPFIETSAKDNINIDEV 152 (160)
T ss_pred -e----ecHHHHHHHHHHcC------CcEEEeccCCCCCHHHH
Confidence 1 11123333444432 47999999999999985
No 223
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.59 E-value=2e-14 Score=130.57 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=91.2
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--eEE
Q 010985 68 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TRF 145 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i 145 (496)
|+++|.+++|||||+++++. +.+... ..+ +..+.-...+..++ ..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~--~~~~~~-----------------------------~~~-~~~~~~~~~~~~~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT--NAFPED-----------------------------YVP-TVFENYSADVEVDGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh--CCCCCC-----------------------------CCC-cEEeeeeEEEEECCEEEEE
Confidence 58999999999999999853 211110 001 11111112233333 468
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHH-----HHHHHH--cCCceEEEEEeeccCCCC
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH-----VMLAKT--LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~-----~~~~~~--~~~~~~ivviNK~D~~~~ 218 (496)
.|+||||+++|.......+..+|++|+|+|.+.. ++.+. +..+.. .++| +|+|.||+|+...
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 117 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSP----------ASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLRED 117 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhC
Confidence 8999999998876666677899999999999864 22222 122222 2567 9999999998431
Q ss_pred CccHHHHH------HHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~------~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
....+.+. -..++...+.+..++ .+++++||++|.|++++.+
T Consensus 118 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf~ 165 (174)
T smart00174 118 KSTLRELSKQKQEPVTYEQGEALAKRIGA-----VKYLECSALTQEGVREVFE 165 (174)
T ss_pred hhhhhhhhcccCCCccHHHHHHHHHHcCC-----cEEEEecCCCCCCHHHHHH
Confidence 10000000 011223344444442 3689999999999998643
No 224
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=1.4e-14 Score=133.43 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=92.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC---C
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 142 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~ 142 (496)
++|+++|.+|+|||||+++|+.. .... +..+.+..+.. ..+... .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~--~~~~-----------------------------~~~~t~~~~~~-~~i~~~~~~~ 48 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQG--KFPE-----------------------------EYVPTVFENYV-TNIQGPNGKI 48 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC--cCCC-----------------------------CCCCeeeeeeE-EEEEecCCcE
Confidence 48999999999999999999521 1110 00011111211 122222 3
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHH--cCCceEEEEEeeccCCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT--LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~--~~~~~~ivviNK~D~~~~~ 219 (496)
..+.|+||||+++|.......+..+|++|+|+|.+.... |+ .....+ ..... .++| +|+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 121 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS---LD---NVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDK 121 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCc
Confidence 568999999999987776667889999999999987531 00 111111 11111 2567 89999999984221
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
...+ .....+...+.+..+. .+++.+||++|.|+.++..
T Consensus 122 -~~~~-~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 160 (187)
T cd04132 122 -NLDR-KVTPAQAESVAKKQGA-----FAYLECSAKTMENVEEVFD 160 (187)
T ss_pred -cccC-CcCHHHHHHHHHHcCC-----cEEEEccCCCCCCHHHHHH
Confidence 0000 0011233334444432 2689999999999998644
No 225
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.59 E-value=3.1e-14 Score=129.66 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=93.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|.+|+|||||+.+++. +..... ..+ +..+.-...+..++ .
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~--~~f~~~-----------------------------~~~-t~~~~~~~~~~~~~~~~ 49 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT--NAFPGE-----------------------------YIP-TVFDNYSANVMVDGKPV 49 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCCc-----------------------------CCC-cceeeeEEEEEECCEEE
Confidence 6899999999999999998852 221110 001 11111111222333 6
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHH-HHHHHHHc--CCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKTL--GVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e-~~~~~~~~--~~~~~ivviNK~D~~~~~~ 220 (496)
.+.|+||||+++|.......+..+|++|+|+|.+.... |+ .... .+..+... ++| +|+|.||+|+.....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---f~---~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~ 122 (174)
T cd01871 50 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKD 122 (174)
T ss_pred EEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhccChh
Confidence 68899999999997766667889999999999987531 10 1111 22222221 466 899999999843211
Q ss_pred cHHHHHH------HHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 221 SKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 221 ~~~~~~~------i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..+...+ ..++...+.+..+ ..+++++||++|.|++++.
T Consensus 123 ~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~~f 167 (174)
T cd01871 123 TIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQKGLKTVF 167 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEecccccCCHHHHH
Confidence 1111111 0122233344433 2479999999999999853
No 226
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.59 E-value=2.8e-14 Score=130.03 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=92.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|.+++|||||+.++++ +..... ..+.+..+. ...+..++ .
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~--~~f~~~-----------------------------~~pt~~~~~-~~~~~~~~~~~ 49 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT--NKFPSE-----------------------------YVPTVFDNY-AVTVMIGGEPY 49 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCC-----------------------------CCCceeeee-EEEEEECCEEE
Confidence 6899999999999999999852 221110 001111111 11234444 6
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e-~~~~~~~--~~~~~~ivviNK~D~~~~~~ 220 (496)
.+.|+||||+++|-.......+.+|++|+|+|.+.... |+ ...+ .+..+.. -++| +|+|.||+|+...
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s---~~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~-- 120 (175)
T cd01874 50 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FE---NVKEKWVPEITHHCPKTP-FLLVGTQIDLRDD-- 120 (175)
T ss_pred EEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECHhhhhC--
Confidence 68899999999987666667789999999999987532 10 1111 1222222 2466 8999999998322
Q ss_pred cHHHHHHH---------HHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 221 SKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 221 ~~~~~~~i---------~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+..+.+ .++...+.+..+ ..+++++||++|.|+.++.
T Consensus 121 -~~~~~~l~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SA~tg~~v~~~f 167 (175)
T cd01874 121 -PSTIEKLAKNKQKPITPETGEKLARDLK-----AVKYVECSALTQKGLKNVF 167 (175)
T ss_pred -hhhHHHhhhccCCCcCHHHHHHHHHHhC-----CcEEEEecCCCCCCHHHHH
Confidence 1111111 112222333322 2579999999999999863
No 227
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.59 E-value=1.9e-14 Score=138.20 Aligned_cols=149 Identities=15% Similarity=0.249 Sum_probs=91.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
.+|+++|.+|+|||||+++++. +..... ...++.+.....+..++ +
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~--~~f~~~------------------------------y~pTi~d~~~k~~~i~~~~~ 48 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLG--GRFEEQ------------------------------YTPTIEDFHRKLYSIRGEVY 48 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHc--CCCCCC------------------------------CCCChhHhEEEEEEECCEEE
Confidence 4799999999999999999952 211110 01122222233344444 6
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH------------cCCceEEEEEe
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------------LGVTKLLLVVN 211 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~------------~~~~~~ivviN 211 (496)
.+.|+||||+++|.......+..+|++|+|+|.+.... |+ .....+..+.. .++| +|+|.|
T Consensus 49 ~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~S---f~---~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgN 121 (247)
T cd04143 49 QLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRES---FE---EVCRLREQILETKSCLKNKTKENVKIP-MVICGN 121 (247)
T ss_pred EEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhhcccccccccCCCCc-EEEEEE
Confidence 78899999999886655556788999999999987531 11 11111111111 2456 899999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
|+|+... .+... +++..++... ..++++++||++|.|++++.
T Consensus 122 K~Dl~~~--~~v~~----~ei~~~~~~~-----~~~~~~evSAktg~gI~elf 163 (247)
T cd04143 122 KADRDFP--REVQR----DEVEQLVGGD-----ENCAYFEVSAKKNSNLDEMF 163 (247)
T ss_pred Cccchhc--cccCH----HHHHHHHHhc-----CCCEEEEEeCCCCCCHHHHH
Confidence 9998421 11111 2233333221 13579999999999999864
No 228
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.59 E-value=1.4e-14 Score=130.96 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=91.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe--CCe
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~--~~~ 143 (496)
++|+++|.+|+|||||+++|+... ... +. ..+..+.....+.. ...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~--~~~-----------------------------~~-~~~~~~~~~~~~~~~~~~~ 48 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK--FPT-----------------------------EY-VPTVFDNYSATVTVDGKQV 48 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCC-----------------------------CC-CCceeeeeEEEEEECCEEE
Confidence 589999999999999999995321 100 00 11111111222222 346
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCcc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~~~~~~~ 221 (496)
.+.++||||+.+|.......+..+|++++|+|++.... +. ....+.+..+... +.| +++|.||+|+......
T Consensus 49 ~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~ 122 (171)
T cd00157 49 NLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSS---FE--NVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENT 122 (171)
T ss_pred EEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhh
Confidence 78999999999876555555678999999999987421 00 0111222222222 366 8999999998533211
Q ss_pred HHH-----HHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 222 KER-----YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 222 ~~~-----~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
... ..-..++...+....++ .+++++|+++|.|+.++
T Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 164 (171)
T cd00157 123 LKKLEKGKEPITPEEGEKLAKEIGA-----IGYMECSALTQEGVKEV 164 (171)
T ss_pred hhhcccCCCccCHHHHHHHHHHhCC-----eEEEEeecCCCCCHHHH
Confidence 000 00012233334444432 37999999999999985
No 229
>PLN03110 Rab GTPase; Provisional
Probab=99.58 E-value=2.4e-14 Score=135.04 Aligned_cols=151 Identities=18% Similarity=0.172 Sum_probs=97.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
..++|+++|++++|||||+++|+...- ..+..+.+..+.....+..++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~-------------------------------~~~~~~t~g~~~~~~~v~~~~~ 59 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF-------------------------------CLESKSTIGVEFATRTLQVEGK 59 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCceeEEEEEEEEEECCE
Confidence 458999999999999999999952110 001112233344444454444
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||++.|.......+..+|++|+|+|.+..... + .....+..+.. .++| +++|.||+|+...
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~---~---~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~ 132 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF---D---NVQRWLRELRDHADSNIV-IMMAGNKSDLNHL 132 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHH---H---HHHHHHHHHHHhCCCCCe-EEEEEEChhcccc
Confidence 5789999999999877777778899999999999865321 0 11122223332 2566 8999999998322
Q ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ...+.. ..+.... .++++++||++|.|++++.+
T Consensus 133 ~~~~~~~~-------~~l~~~~------~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 133 RSVAEEDG-------QALAEKE------GLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred cCCCHHHH-------HHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 111111 1121222 35799999999999998654
No 230
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.58 E-value=1.5e-14 Score=113.62 Aligned_cols=79 Identities=30% Similarity=0.493 Sum_probs=73.3
Q ss_pred eEEEEEEEEc--cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeE
Q 010985 295 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 372 (496)
Q Consensus 295 ~~~~i~~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~v 372 (496)
|||+|.++|+ +.|+.++|+|++|.+++||+++++|.+..++|++|++++.+++.|.|||+|+++|+ +..++++|++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G~v 78 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRGDV 78 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCCCE
Confidence 6899999996 45678999999999999999999999999999999999999999999999999998 4678999999
Q ss_pred Eec
Q 010985 373 LSS 375 (496)
Q Consensus 373 l~~ 375 (496)
|+.
T Consensus 79 l~~ 81 (81)
T cd03695 79 IVA 81 (81)
T ss_pred EeC
Confidence 974
No 231
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=1.3e-14 Score=133.92 Aligned_cols=149 Identities=19% Similarity=0.175 Sum_probs=92.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--Ce
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~ 143 (496)
++|+++|..++|||||+++|+. +.... +..+-.+.+.....+..+ ..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE--DEFSE-----------------------------STKSTIGVDFKIKTVYIENKII 49 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------CCCCceeeEEEEEEEEECCEEE
Confidence 4799999999999999999952 21110 001112223332333333 35
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC-
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN- 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~- 219 (496)
.+.++||||+++|-......+..+|++|+|+|.+.... +. .....+..+..+ ..| +++|.||+|+....
T Consensus 50 ~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~ 122 (188)
T cd04125 50 KLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQES---FE---NLKFWINEINRYARENVI-KVIVANKSDLVNNKV 122 (188)
T ss_pred EEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECCCCccccc
Confidence 67899999999888777778899999999999987521 10 111122222222 345 89999999984211
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.+.+. ...+.... .++++.+||++|.|++++..
T Consensus 123 v~~~~-------~~~~~~~~------~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 123 VDSNI-------AKSFCDSL------NIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred CCHHH-------HHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 11111 11222222 24799999999999998644
No 232
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.58 E-value=5.4e-14 Score=127.79 Aligned_cols=147 Identities=18% Similarity=0.217 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEe-eeeEEEEeCC--
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VGRAHFETET-- 142 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~-~~~~~~~~~~-- 142 (496)
.+|+++|.+|+|||||+.+++. +..... .-.|+. .....+..++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~~ 49 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFIS--HSFPDY-------------------------------HDPTIEDAYKQQARIDNEP 49 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHh--CCCCCC-------------------------------cCCcccceEEEEEEECCEE
Confidence 6899999999999999999852 221110 001111 1111233334
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||..+|.......+..+|++|+|+|.++... |+ ...+....+.. .++| +++|.||+|+...
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~S---f~---~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~ 122 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHS---FQ---EASEFKKLITRVRLTEDIP-LVLVGNKVDLESQ 122 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhc
Confidence 568899999999987777777889999999999987632 10 11111122222 2467 8999999998321
Q ss_pred -CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 -NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 -~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
..+.+ +...+.+.. +++++++||++|.|++++.+
T Consensus 123 ~~v~~~-------~~~~~a~~~------~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 123 RQVTTE-------EGRNLAREF------NCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred CccCHH-------HHHHHHHHh------CCEEEEEecCCCCCHHHHHH
Confidence 11111 122233333 35799999999999998643
No 233
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.58 E-value=3.1e-14 Score=115.40 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=77.0
Q ss_pred ccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEE
Q 010985 383 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 459 (496)
Q Consensus 383 ~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~ 459 (496)
+.+|+|++.+|+... +.+|..||++.+|+++.++.|+|..+ + .+++|++|+.+.|+|+|++|++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~----~---------~~~~l~~g~~~~v~i~l~~p~~ 69 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP----P---------GKEMVMPGEDTKVTLILRRPMV 69 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC----C---------CCcEeCCCCEEEEEEEECCcEE
Confidence 589999999976322 37899999999999999999998865 1 2567999999999999999999
Q ss_pred eeeccCcCccceEEEEeCCcEEEEEEEEEc
Q 010985 460 TEKFADFAQLGRFTLRTEGKTVAVGKVTEL 489 (496)
Q Consensus 460 ~e~~~~~~~lgrfilr~~g~tva~G~V~~v 489 (496)
++++ |||+||++++|+|+|+|+++
T Consensus 70 ~~~g------~rf~lR~~~~tvg~G~V~~~ 93 (93)
T cd03706 70 LEKG------QRFTLRDGNRTIGTGLVTDT 93 (93)
T ss_pred EeeC------CEEEEEECCEEEEEEEEEeC
Confidence 9984 89999999999999999874
No 234
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.58 E-value=2.1e-14 Score=136.73 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=62.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|.+|+|||||+++|...... ....+++|.+.....+.+.+..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-------------------------------v~~~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-------------------------------VAAYEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-------------------------------ccCCCCccccceEEEEEECCeEEE
Confidence 6899999999999999999522110 011256777777777788899999
Q ss_pred EEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCCC
Q 010985 147 ILDAPGHKS-------YVPNMISGASQADIGVLVISARKG 179 (496)
Q Consensus 147 liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g 179 (496)
++||||+.+ +....+..++.+|++++|+|++..
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 999999753 234566778999999999998764
No 235
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.57 E-value=7.3e-14 Score=125.41 Aligned_cols=149 Identities=21% Similarity=0.278 Sum_probs=95.1
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEE
Q 010985 68 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 147 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~l 147 (496)
|+++|++|+|||||++.|+.... .. ..+...|.|.+..... .+ ..+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~--~~-~~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LA----------------------------RTSKTPGKTQLINFFN--VN-DKFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-ee----------------------------eecCCCCcceeEEEEE--cc-CeEEE
Confidence 79999999999999999952111 00 0111244555443322 22 38999
Q ss_pred EeCCCCccc-------------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 148 LDAPGHKSY-------------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 148 iDtpG~~~~-------------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
+||||+... ....+......+++++|+|+..... ....+.+..+...+.| +++++||+|
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~l~~~~~~-vi~v~nK~D 121 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPT-------EIDLEMLDWLEELGIP-FLVVLTKAD 121 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCC-------HhHHHHHHHHHHcCCC-EEEEEEchh
Confidence 999997543 1222333346789999999987532 2444556677777778 889999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+. +.+........+...++... ...+++++|++++.|+.++.
T Consensus 122 ~~----~~~~~~~~~~~~~~~l~~~~----~~~~~~~~Sa~~~~~~~~l~ 163 (170)
T cd01876 122 KL----KKSELAKALKEIKKELKLFE----IDPPIILFSSLKGQGIDELR 163 (170)
T ss_pred cC----ChHHHHHHHHHHHHHHHhcc----CCCceEEEecCCCCCHHHHH
Confidence 83 23333344445555554211 24579999999999998853
No 236
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.56 E-value=1.5e-14 Score=122.55 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=76.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|.+|+|||||+|+|+..... .....+++|.+.....+.+++..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA------------------------------KVSNIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS------------------------------EESSSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhccccc------------------------------cccccccceeeeeeeeeeeceeeEE
Confidence 6899999999999999999732111 1112367788776677788999999
Q ss_pred EEeCCCCcc---------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 010985 147 ILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 212 (496)
Q Consensus 147 liDtpG~~~---------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK 212 (496)
|+||||..+ ........+..+|++++|+|+..... ....+.+..+. .+.| +++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-------~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-------EDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-------HHHHHHHHHHH-TTSE-EEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHh-cCCC-EEEEEcC
Confidence 999999654 23446666789999999999877311 12334444454 4555 9999998
No 237
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.56 E-value=4.5e-14 Score=133.44 Aligned_cols=153 Identities=15% Similarity=0.152 Sum_probs=94.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|..|+|||||+++++. +..... .....|.+............
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~--~~f~~~---------------------------~~~tig~~~~~~~~~~~~~~ 61 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh--CCCCCc---------------------------cCCccceeEEEEEEEECCeE
Confidence 5568999999999999999999852 211100 00112222222222222234
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCCc
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~--~~~~~~ivviNK~D~~~~~~ 220 (496)
..+.|+||||+++|........+.+|++|+|+|.+....- . .....+..+.. .++| +++|.||+|+.....
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~---~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v 134 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY---K---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHH---H---HHHHHHHHHHHhCCCCc-EEEEEEchhhhhccC
Confidence 6889999999999876666667899999999999876321 0 11111122221 2567 899999999842221
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
..+ ++ .+.+.. .++++.+||++|.|+.++..
T Consensus 135 ~~~-------~~-~~~~~~------~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 135 KAK-------QV-TFHRKK------NLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred CHH-------HH-HHHHhc------CCEEEEcCCCCCCCHHHHHH
Confidence 111 11 122222 35789999999999998643
No 238
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.56 E-value=4.8e-14 Score=132.47 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=94.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC---
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--- 141 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--- 141 (496)
..+|+++|.+|+|||||+++|+.. .... ...+.++.+.....+...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~--~~~~-----------------------------~~~~ti~~d~~~~~i~~~~~~ 50 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEG--RFAE-----------------------------VSDPTVGVDFFSRLIEIEPGV 50 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCceeceEEEEEEEEECCCC
Confidence 378999999999999999999621 1100 001223334333334332
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-Hc--CCceEEEEEeeccCCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TL--GVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~--~~~~~ivviNK~D~~~~ 218 (496)
...+.|+||||++.|.......+..+|++|+|+|.+.... |+ ...+.+..+. .. ..+.+++|.||+|+...
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~S---f~---~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRES---FE---HVHDWLEEARSHIQPHRPVFILVGHKCDLESQ 124 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCeEEEEEEccccccc
Confidence 3578999999999987777777889999999999987521 10 1112222222 22 12337889999998421
Q ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ... ++...+.+.. .++++.+||++|.|++++.+
T Consensus 125 ~~v~~-------~~~~~~~~~~------~~~~~e~Sak~g~~v~e~f~ 159 (211)
T cd04111 125 RQVTR-------EEAEKLAKDL------GMKYIETSARTGDNVEEAFE 159 (211)
T ss_pred cccCH-------HHHHHHHHHh------CCEEEEEeCCCCCCHHHHHH
Confidence 1 111 1222333333 25799999999999998654
No 239
>PRK09866 hypothetical protein; Provisional
Probab=99.56 E-value=1.1e-13 Score=143.75 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=75.6
Q ss_pred CeEEEEEeCCCCcc-----cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEeecc
Q 010985 142 TTRFTILDAPGHKS-----YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMD 214 (496)
Q Consensus 142 ~~~i~liDtpG~~~-----~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~--~~~~ivviNK~D 214 (496)
..++.|+||||... +-+.|...+..+|++++|||+..+.. ...++.+..+...+ .| +|+|+||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s-------~~DeeIlk~Lkk~~K~~P-VILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKS-------ISDEEVREAILAVGQSVP-LYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCC-------hhHHHHHHHHHhcCCCCC-EEEEEEccc
Confidence 36799999999533 34456778899999999999987532 34556666677666 36 899999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+. +...+..+.+...+...+...++. ...++||||++|.|++.+.
T Consensus 301 l~--dreeddkE~Lle~V~~~L~q~~i~---f~eIfPVSAlkG~nid~LL 345 (741)
T PRK09866 301 QQ--DRNSDDADQVRALISGTLMKGCIT---PQQIFPVSSMWGYLANRAR 345 (741)
T ss_pred CC--CcccchHHHHHHHHHHHHHhcCCC---CceEEEEeCCCCCCHHHHH
Confidence 83 211222344444444444433332 2469999999999999854
No 240
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.55 E-value=7.3e-14 Score=125.47 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=92.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
.+|+++|.+++|||||+.+++ .+.+.. +..+.+..+.....+..++ .
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~--~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFT--DNEFHS-----------------------------SHISTIGVDFKMKTIEVDGIKV 49 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHh--cCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEE
Confidence 379999999999999999985 221110 1112233333334455554 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC-
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN- 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~- 219 (496)
.+.++||||...|-.........+|++++|+|.+.... |+ .....+..+... ++| +++|.||+|+....
T Consensus 50 ~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---f~---~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~ 122 (161)
T cd04117 50 RIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERS---YQ---HIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQ 122 (161)
T ss_pred EEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECcccccccC
Confidence 67899999999887777777889999999999887521 11 111112222222 355 89999999984221
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
... ++...+.+.. ..+++++||++|.|+.++
T Consensus 123 v~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 123 VGD-------EQGNKLAKEY------GMDFFETSACTNSNIKES 153 (161)
T ss_pred CCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 111 1222222322 257899999999999985
No 241
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.55 E-value=1.3e-13 Score=127.23 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=90.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--Ce
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~ 143 (496)
.+|+++|.+|+|||||+++++. +.... +..+.+..+.. ..+..+ ..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~-~~i~~~~~~~ 48 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQ-----------------------------VYEPTVFENYV-HDIFVDGLHI 48 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------ccCCcceeeeE-EEEEECCEEE
Confidence 4799999999999999999852 21110 00011111111 112223 36
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH-HHHHHHHH--cCCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~--~~~~~~ivviNK~D~~~~~~ 220 (496)
.+.|+||||+++|-.........+|++|+|+|.+.... |+ ... ..+..+.. .+.| +|+|.||+|+.....
T Consensus 49 ~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~s---f~---~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~ 121 (189)
T cd04134 49 ELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDS---LE---NVESKWLGEIREHCPGVK-LVLVALKCDLREARN 121 (189)
T ss_pred EEEEEECCCChhccccccccccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhccChh
Confidence 78999999999886555556788999999999887532 10 111 11222222 2566 899999999843210
Q ss_pred cHHHHHH------HHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 221 SKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 221 ~~~~~~~------i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..+.... ..++...+.+..+ .++++.+||++|.|++++.
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~v~e~f 166 (189)
T cd04134 122 ERDDLQRYGKHTISYEEGLAVAKRIN-----ALRYLECSAKLNRGVNEAF 166 (189)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcC-----CCEEEEccCCcCCCHHHHH
Confidence 0000000 0112223333332 3579999999999999864
No 242
>PLN03108 Rab family protein; Provisional
Probab=99.55 E-value=4.7e-14 Score=132.52 Aligned_cols=149 Identities=20% Similarity=0.166 Sum_probs=93.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|++|+|||||+++|+... ... ...+.+..+.....+...+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~--~~~-----------------------------~~~~ti~~~~~~~~i~~~~~~ 54 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKR--FQP-----------------------------VHDLTIGVEFGARMITIDNKP 54 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCC-----------------------------CCCCCccceEEEEEEEECCEE
Confidence 4899999999999999999995211 100 0001122222222333333
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC-
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV- 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~- 218 (496)
..+.++||||++.|.......+..+|++|+|+|++..... ....+.+..+.. .+.| ++++.||+|+...
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~------~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~ 127 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF------NHLASWLEDARQHANANMT-IMLIGNKCDLAHRR 127 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHH------HHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc
Confidence 5688999999999887777778899999999999875210 011111222222 2456 8999999998421
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..+. ++...+.+.. .++++.+||++|.|+.+++
T Consensus 128 ~~~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 128 AVST-------EEGEQFAKEH------GLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred CCCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 1111 2223333433 3579999999999999864
No 243
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.55 E-value=3.3e-14 Score=129.29 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=92.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++++++|.+++|||||+.+++. +.... + ...++.+.-...+..++ .
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~--~~~~~-----------------------------~-~~~t~~~~~~~~~~~~~~~~ 48 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT--NGYPT-----------------------------E-YVPTAFDNFSVVVLVDGKPV 48 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------C-CCCceeeeeeEEEEECCEEE
Confidence 4799999999999999988852 11110 0 01122232222333333 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCCcc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~--~~~~~~ivviNK~D~~~~~~~ 221 (496)
.+.|+||||+.+|.......++.+|++|+|+|.+.... |+ ......+..+.. .+.| ++++.||+|+....-.
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~s---f~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~ 122 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSS---FQ--NISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNV 122 (173)
T ss_pred EEEEEECCCChhhccccccccCCCcEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhH
Confidence 67899999999887766667789999999999987531 00 011111222222 2466 8999999998421100
Q ss_pred HH------HHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 222 KE------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 222 ~~------~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. ...-..++...+.+..+. .+++++||++|.|++++.
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~e~Sa~~~~~v~~lf 166 (173)
T cd04130 123 LIQLARYGEKPVSQSRAKALAEKIGA-----CEYIECSALTQKNLKEVF 166 (173)
T ss_pred HHHHhhcCCCCcCHHHHHHHHHHhCC-----CeEEEEeCCCCCCHHHHH
Confidence 00 000001223333443332 379999999999999864
No 244
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.54 E-value=6.1e-14 Score=126.33 Aligned_cols=146 Identities=17% Similarity=0.156 Sum_probs=86.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--eE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 144 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~ 144 (496)
+|+++|++|+|||||+++++. +...... ..++.......+..++ ..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~--~~~~~~~------------------------------~~t~~~~~~~~~~~~~~~~~ 48 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT--KRFIGEY------------------------------DPNLESLYSRQVTIDGEQVS 48 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh--Ccccccc------------------------------CCChHHhceEEEEECCEEEE
Confidence 589999999999999999862 1110000 0111011112222333 46
Q ss_pred EEEEeCCCCccc-HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEeeccCCCC
Q 010985 145 FTILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 145 i~liDtpG~~~~-~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-----~~~~~~ivviNK~D~~~~ 218 (496)
+.|+||||+..+ ...+...+..+|++|+|+|++.... |+ .....+..+.. .++| +|+|.||+|+...
T Consensus 49 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 121 (165)
T cd04146 49 LEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS---FD---EISQLKQLIREIKKRDREIP-VILVGNKADLLHY 121 (165)
T ss_pred EEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHh
Confidence 889999999853 4445566789999999999987632 10 11111222222 2567 8999999998321
Q ss_pred -CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccc-ccccccc
Q 010985 219 -NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG-LNMKTRV 264 (496)
Q Consensus 219 -~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g-~gi~~l~ 264 (496)
..+. ++...+.+.. ..+++++||++| .|++++.
T Consensus 122 ~~v~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~~v~~~f 156 (165)
T cd04146 122 RQVST-------EEGEKLASEL------GCLFFEVSAAEDYDGVHSVF 156 (165)
T ss_pred CccCH-------HHHHHHHHHc------CCEEEEeCCCCCchhHHHHH
Confidence 1111 1122223333 247999999999 4898863
No 245
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.54 E-value=4.6e-14 Score=112.99 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=73.4
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEE-CceEEe
Q 010985 382 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV-NNSICT 460 (496)
Q Consensus 382 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~-~~pi~~ 460 (496)
.++.|+|++.|++. +++|.+||++++|+|+.+++|+|..+.+ +++++|+.+.|+|+| .+|+|+
T Consensus 2 ~~~~f~A~i~il~~--~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~ 65 (87)
T cd03708 2 ACWEFEAEILVLHH--PTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYL 65 (87)
T ss_pred ceeEEEEEEEEEcC--CCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEE
Confidence 47899999999542 3789999999999999999999998742 469999999999995 899998
Q ss_pred eeccCcCccceEEEEeCCcEEEEEEEEEc
Q 010985 461 EKFADFAQLGRFTLRTEGKTVAVGKVTEL 489 (496)
Q Consensus 461 e~~~~~~~lgrfilr~~g~tva~G~V~~v 489 (496)
++ +|||+||+ |+|+|+|+|+++
T Consensus 66 e~------~grf~lr~-g~tva~G~I~~~ 87 (87)
T cd03708 66 RE------GQRLIFRE-GRTKGVGEVTKV 87 (87)
T ss_pred cc------CCeEEEEC-CCcEEEEEEEEC
Confidence 87 59999954 599999999874
No 246
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.53 E-value=7.1e-14 Score=112.60 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=75.1
Q ss_pred ccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEE
Q 010985 383 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 459 (496)
Q Consensus 383 ~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~ 459 (496)
+..|+|++.+++... ..+|+.||++.+|+++..+.|++..+. +|++|++|+.+.|+|+|++|++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~ 69 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA 69 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence 688999999976432 268999999999999999999988753 4667999999999999999999
Q ss_pred eeeccCcCccceEEEEeCCcEEEEEEE
Q 010985 460 TEKFADFAQLGRFTLRTEGKTVAVGKV 486 (496)
Q Consensus 460 ~e~~~~~~~lgrfilr~~g~tva~G~V 486 (496)
++++ |||+||++++|+|+|+|
T Consensus 70 ~~~~------~rf~lR~~~~tig~G~V 90 (90)
T cd03707 70 LEKG------LRFAIREGGRTVGAGVI 90 (90)
T ss_pred EecC------CEEEEecCCcEEEEEEC
Confidence 9884 89999999999999986
No 247
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=8.2e-14 Score=123.07 Aligned_cols=149 Identities=20% Similarity=0.295 Sum_probs=98.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEE--EEe-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH--FET- 140 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~--~~~- 140 (496)
...+|+++|..++|||||+-++. .+.+++.. + .|+-..+.. +..
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfv--k~~F~e~~---------------------------e----~TIGaaF~tktv~~~ 50 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFV--KDQFHENI---------------------------E----PTIGAAFLTKTVTVD 50 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhh--hCcccccc---------------------------c----cccccEEEEEEEEeC
Confidence 45899999999999999997763 33222210 1 233222221 222
Q ss_pred -CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEE--EEeeccCCC
Q 010985 141 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL--VVNKMDDHT 217 (496)
Q Consensus 141 -~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~iv--viNK~D~~~ 217 (496)
...++-|+||+|+++|-.-.-...+.|++||+|.|.++... | ...+.-+..+....-|.+++ |-||+|+..
T Consensus 51 ~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~S---F---~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 51 DNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEES---F---EKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred CcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHH---H---HHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 34778899999999997777778899999999999987532 1 13344445555544455554 899999943
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. -+-.+ ++...+....| ..++.+||++|.|+.++
T Consensus 125 ~--R~V~~----~ea~~yAe~~g------ll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 125 R--REVEF----EEAQAYAESQG------LLFFETSAKTGENVNEI 158 (200)
T ss_pred c--ccccH----HHHHHHHHhcC------CEEEEEecccccCHHHH
Confidence 1 11112 33444555443 57999999999999985
No 248
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.52 E-value=1.9e-13 Score=124.19 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=90.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--Ce
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~ 143 (496)
.+|+++|++++|||||+++|+.. .... ...+ +..+.....+..+ ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~--~~~~-----------------------------~~~~-t~~~~~~~~~~~~~~~~ 49 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD--QFPE-----------------------------VYVP-TVFENYVADIEVDGKQV 49 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC--CCCC-----------------------------CCCC-ccccceEEEEEECCEEE
Confidence 58999999999999999998531 1110 0001 1111111223333 35
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHH--cCCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT--LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~--~~~~~~ivviNK~D~~~~~~ 220 (496)
.+.|+||||+++|.......+..+|++++|+|.+.... ++ ...+.+ ..+.. .++| +++|.||+|+.....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 122 (175)
T cd01870 50 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEH 122 (175)
T ss_pred EEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeeChhcccChh
Confidence 68899999999887665567789999999999886421 00 111111 11222 2567 899999999843211
Q ss_pred cHHHHHH------HHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 221 SKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 221 ~~~~~~~------i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..+.... ...+...+.+..+ ..+++++||++|.|++++.
T Consensus 123 ~~~~i~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~lf 167 (175)
T cd01870 123 TRRELAKMKQEPVKPEEGRDMANKIG-----AFGYMECSAKTKEGVREVF 167 (175)
T ss_pred hhhhhhhccCCCccHHHHHHHHHHcC-----CcEEEEeccccCcCHHHHH
Confidence 1111100 0112223333332 2479999999999999863
No 249
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.52 E-value=3.2e-13 Score=123.04 Aligned_cols=154 Identities=18% Similarity=0.117 Sum_probs=93.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEee-eeEEEEeC--C
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GRAHFETE--T 142 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~-~~~~~~~~--~ 142 (496)
++|+++|.+++|||||+.+++. +..... .-.|+.. -...+..+ .
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~~~-------------------------------~~~Ti~~~~~~~~~~~~~~ 48 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFPTD-------------------------------YIPTVFDNFSANVSVDGNT 48 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCCC-------------------------------CCCcceeeeEEEEEECCEE
Confidence 6899999999999999999852 222110 0112211 11123333 3
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEeeccCCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t-~e~~~~~~~--~~~~~~ivviNK~D~~~~~ 219 (496)
..+.|+||+|+++|.......++.+|++|||+|.+.... |+ .. ...+..+.. -++| +|+|.||+|+....
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~ 121 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRAS---YE---NVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDK 121 (176)
T ss_pred EEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhccCh
Confidence 678999999999998777778899999999999987532 11 11 112222222 2466 89999999983210
Q ss_pred ccH-H---HHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSK-E---RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~-~---~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
... . ...-..++...+.+..+. .+++.+||++|.|++++.
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~nV~~~F 165 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVF 165 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCC-----CEEEECCCCcccCHHHHH
Confidence 000 0 000012233334444332 268999999999999864
No 250
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.52 E-value=4.6e-13 Score=123.84 Aligned_cols=156 Identities=18% Similarity=0.128 Sum_probs=93.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeee-eEEEEeCC-
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETET- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~-~~~~~~~~- 142 (496)
.++|+++|..++|||||+.+++. +.... + .-.|+... ...+..++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~--~~f~~-----------------------------~--~~~t~~~~~~~~~~~~~~ 49 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTT--NAFPK-----------------------------E--YIPTVFDNYSAQTAVDGR 49 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHh--CCCCc-----------------------------C--CCCceEeeeEEEEEECCE
Confidence 47999999999999999999852 22110 0 11222111 11122333
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHH--cCCceEEEEEeeccCCCC
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT--LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~--~~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||++.|........+.||++|+|+|.+.... |+ .....+ ..+.. -++| +++|.||.|+...
T Consensus 50 ~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 122 (191)
T cd01875 50 TVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSS---YE---NVRHKWHPEVCHHCPNVP-ILLVGTKKDLRND 122 (191)
T ss_pred EEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEeChhhhcC
Confidence 668899999999998766667789999999999987532 11 111111 11111 2567 8999999998422
Q ss_pred CccHHHHHH------HHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~------i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
....+.+.+ ..++...+.+..+ ..+++.+||++|.|+.++..
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SAk~g~~v~e~f~ 170 (191)
T cd01875 123 ADTLKKLKEQGQAPITPQQGGALAKQIH-----AVKYLECSALNQDGVKEVFA 170 (191)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCCHHHHHH
Confidence 100011111 0112233333332 24799999999999998643
No 251
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.51 E-value=2.3e-13 Score=116.75 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=106.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.++|.|+|..||||||++++|+.... + .-..|.-......+.+++
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~---~-------------------------------~i~pt~gf~Iktl~~~~~ 60 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT---D-------------------------------TISPTLGFQIKTLEYKGY 60 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc---c-------------------------------ccCCccceeeEEEEecce
Confidence 379999999999999999999952210 0 012344445566788899
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHH----HHHcCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~----~~~~~~~~~ivviNK~D~~~~~ 219 (496)
.++++|..|+..+..-+......+|+.|+|||.++..- + ..+..++.. -+..|.| ++|+.||.|++++
T Consensus 61 ~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r---~---~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~- 132 (185)
T KOG0073|consen 61 TLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMR---M---QECKQELTELLVEERLAGAP-LLVLANKQDLPGA- 132 (185)
T ss_pred EEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHH---H---HHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc-
Confidence 99999999999999989999999999999999976531 0 122223222 2224667 8999999999533
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.+.+.+..+ -.+..+++.. .++++.+||.+|+++.+-
T Consensus 133 l~~~~i~~~-~~L~~l~ks~------~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 133 LSLEEISKA-LDLEELAKSH------HWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred cCHHHHHHh-hCHHHhcccc------CceEEEEeccccccHHHH
Confidence 344333322 2345555443 578999999999988763
No 252
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=132.49 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=100.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..-..+.|+|+|+||+|||||+++|......+.+. +=||-.+...+|+.
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~Y-------------------------------PFTTK~i~vGhfe~ 212 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPY-------------------------------PFTTKGIHVGHFER 212 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCC-------------------------------CccccceeEeeeec
Confidence 33467899999999999999999995433332221 33677777788999
Q ss_pred CCeEEEEEeCCCCccc--------HhHHhhccc-cCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 010985 141 ETTRFTILDAPGHKSY--------VPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 211 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~--------~~~~~~~~~-~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN 211 (496)
++..+.+|||||.-|- -++++.+++ .++++|+++|++.. .|+....|..-.-.+-..+..| +++|+|
T Consensus 213 ~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~---cgy~lE~Q~~L~~eIk~~f~~p-~v~V~n 288 (346)
T COG1084 213 GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET---CGYSLEEQISLLEEIKELFKAP-IVVVIN 288 (346)
T ss_pred CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc---cCCCHHHHHHHHHHHHHhcCCC-eEEEEe
Confidence 9999999999995432 455566665 67899999999874 2343323322222222334545 999999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
|+|. . ..++++++... +...|. ...+-+|+..+.+++.+
T Consensus 289 K~D~--~--~~e~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 289 KIDI--A--DEEKLEEIEAS----VLEEGG-----EEPLKISATKGCGLDKL 327 (346)
T ss_pred cccc--c--chhHHHHHHHH----HHhhcc-----ccccceeeeehhhHHHH
Confidence 9998 3 23445444433 222221 12456777778777764
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.50 E-value=2.3e-13 Score=126.43 Aligned_cols=138 Identities=19% Similarity=0.239 Sum_probs=91.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|.+|+|||||+|+|++...... ....+|.|.+.....+.+.+..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~-----------------------------~~~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES-----------------------------KLSASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc-----------------------------ccCCCCcccccceeeEEECCeEE
Confidence 5899999999999999999974432211 11135788888888888899999
Q ss_pred EEEeCCCCccc-------HhHHh----hccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-C---CceEEEEE
Q 010985 146 TILDAPGHKSY-------VPNMI----SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G---VTKLLLVV 210 (496)
Q Consensus 146 ~liDtpG~~~~-------~~~~~----~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-~---~~~~ivvi 210 (496)
++|||||..+. ...+. .....+|++|+|+|+.. .. ....+.+..+..+ | .+++|+++
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t-------~~d~~~l~~l~~~fg~~~~~~~ivv~ 123 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FT-------EEEEQAVETLQELFGEKVLDHTIVLF 123 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cC-------HHHHHHHHHHHHHhChHhHhcEEEEE
Confidence 99999997654 11222 22357899999999876 21 2445555555442 3 24588999
Q ss_pred eeccCCCCCccHHHHHHHHHHHHHHHHhcC
Q 010985 211 NKMDDHTVNWSKERYDEIESKMTPFLKASG 240 (496)
Q Consensus 211 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~~ 240 (496)
|+.|....+--++.+......++.+++.++
T Consensus 124 T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 124 TRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred ECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 999974333112222333356677777664
No 254
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.50 E-value=4.3e-13 Score=124.62 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=89.6
Q ss_pred EecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE--eeeeEEEEe--CCeEEE
Q 010985 71 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV--EVGRAHFET--ETTRFT 146 (496)
Q Consensus 71 ~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~--~~~~~~~~~--~~~~i~ 146 (496)
+|..++|||||+.++++ +... ++ ...|+ +.....+.. ....+.
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~-----------------------------~~--~~~Tig~~~~~~~~~~~~~~~~l~ 47 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFE-----------------------------KK--YVATLGVEVHPLVFHTNRGPIRFN 47 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCC-----------------------------CC--CCCceeEEEEEEEEEECCEEEEEE
Confidence 69999999999999852 2111 11 11232 222233333 347789
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCCccHHH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKER 224 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~--~~~~~~ivviNK~D~~~~~~~~~~ 224 (496)
|+||||+++|...+....+.+|++|+|+|.+.... +. .....+..+.. -++| +|+|.||+|+.......+
T Consensus 48 iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S---~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~~- 119 (200)
T smart00176 48 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDVKDRKVKAK- 119 (200)
T ss_pred EEECCCchhhhhhhHHHhcCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECcccccccCCHH-
Confidence 99999999998777778899999999999998632 00 11111222222 3567 899999999842211111
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 225 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 225 ~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.+ .+.+.. .++++.+||++|.|+.++..
T Consensus 120 ------~~-~~~~~~------~~~~~e~SAk~~~~v~~~F~ 147 (200)
T smart00176 120 ------SI-TFHRKK------NLQYYDISAKSNYNFEKPFL 147 (200)
T ss_pred ------HH-HHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 11 122222 46799999999999998644
No 255
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=130.80 Aligned_cols=154 Identities=18% Similarity=0.169 Sum_probs=92.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
+....|+++|.||||||||+|+|......+.+.. =||.........+++
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~Ya-------------------------------FTTL~P~iG~v~ydd 242 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYA-------------------------------FTTLRPHIGTVNYDD 242 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccc-------------------------------eeeeccccceeeccc
Confidence 4566789999999999999999975444433221 155555555555555
Q ss_pred eE-EEEEeCCCCccc-------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEE
Q 010985 143 TR-FTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVV 210 (496)
Q Consensus 143 ~~-i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivvi 210 (496)
+. +++-|.||..+= --..++-+..|+..++|||.+.+..-.-+ .|.......+.. +..+..+||+
T Consensus 243 f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~---~~~~lL~~ELe~yek~L~~rp~liVa 319 (366)
T KOG1489|consen 243 FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPW---QQLQLLIEELELYEKGLADRPALIVA 319 (366)
T ss_pred cceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHH---HHHHHHHHHHHHHhhhhccCceEEEE
Confidence 44 999999994221 22334445667999999999876210000 011111111221 2233378899
Q ss_pred eeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 211 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 211 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
||+|++.. -+...+++...+. +..++|+||++|+|+.++.
T Consensus 320 NKiD~~ea------e~~~l~~L~~~lq--------~~~V~pvsA~~~egl~~ll 359 (366)
T KOG1489|consen 320 NKIDLPEA------EKNLLSSLAKRLQ--------NPHVVPVSAKSGEGLEELL 359 (366)
T ss_pred eccCchhH------HHHHHHHHHHHcC--------CCcEEEeeeccccchHHHH
Confidence 99998311 1122233333332 2359999999999998853
No 256
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.49 E-value=1e-12 Score=120.35 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=94.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeee-eEEEEeC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETE 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~-~~~~~~~ 141 (496)
+..++|+++|..++|||||+.+++. +..... ...|+... ...+..+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~--~~f~~~-------------------------------~~pT~~~~~~~~~~~~ 49 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAK--DCFPEN-------------------------------YVPTVFENYTASFEID 49 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHh--CCCCCc-------------------------------cCCceeeeeEEEEEEC
Confidence 3467999999999999999999852 211110 11121111 1123333
Q ss_pred --CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEeeccCC
Q 010985 142 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDH 216 (496)
Q Consensus 142 --~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t-~e~~~~~~~--~~~~~~ivviNK~D~~ 216 (496)
...+.|+||+|.+.|-.......+.+|++|+|+|.+.... |+ .. ...+..+.. -+.| +|+|.||+|+.
T Consensus 50 ~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL~ 122 (182)
T cd04172 50 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 122 (182)
T ss_pred CEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEeEChhhh
Confidence 3568999999999987766667889999999999887521 10 11 111112222 2456 89999999983
Q ss_pred CCCccHH------HH-HHHHHHHHHHHHhcCCCccCCeeEEeeccccccc-ccccc
Q 010985 217 TVNWSKE------RY-DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRV 264 (496)
Q Consensus 217 ~~~~~~~------~~-~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~g-i~~l~ 264 (496)
.. .... +- .-..++..++.++.++ .+++.+||++|.| +.++.
T Consensus 123 ~~-~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~n~v~~~F 172 (182)
T cd04172 123 TD-LTTLVELSNHRQTPVSYDQGANMAKQIGA-----ATYIECSALQSENSVRDIF 172 (182)
T ss_pred cC-hhhHHHHHhcCCCCCCHHHHHHHHHHcCC-----CEEEECCcCCCCCCHHHHH
Confidence 21 0000 00 0012234445555542 3799999999998 98853
No 257
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.49 E-value=4.4e-13 Score=125.13 Aligned_cols=133 Identities=16% Similarity=0.236 Sum_probs=80.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE--eCCe
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--TETT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~--~~~~ 143 (496)
.+|+++|++++|||||+++|... .... ....++.+.....+. ..+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~--~~~~------------------------------t~~s~~~~~~~~~~~~~~~~~ 48 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTG--KYRS------------------------------TVTSIEPNVATFILNSEGKGK 48 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC--CCCC------------------------------ccCcEeecceEEEeecCCCCc
Confidence 37899999999999999999522 1000 001111111111121 2367
Q ss_pred EEEEEeCCCCcccHhHHhhccccC-CEEEEEEeCCCCccccccCCCCchHHHHHHH----HH--cCCceEEEEEeeccCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQA-DIGVLVISARKGEFETGFEKGGQTREHVMLA----KT--LGVTKLLLVVNKMDDH 216 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~a-D~~ilVvda~~g~~e~~~~~~~~t~e~~~~~----~~--~~~~~~ivviNK~D~~ 216 (496)
.+.|+|||||.+|.......+..+ +++|+|+|+....- .+ ..+.+.+..+ .. -++| +++++||+|+.
T Consensus 49 ~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~--~~---~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~ 122 (203)
T cd04105 49 KFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQK--NL---KDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLF 122 (203)
T ss_pred eEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchh--HH---HHHHHHHHHHHHHHhhccCCCC-EEEEecchhhc
Confidence 899999999999988888888888 99999999987510 00 1222222211 11 2677 89999999986
Q ss_pred CCCccHHHHHHHHHHHHHHH
Q 010985 217 TVNWSKERYDEIESKMTPFL 236 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l 236 (496)
.....+...+.+..++..+.
T Consensus 123 ~a~~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 123 TAKPAKKIKEQLEKELNTLR 142 (203)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 54322223333334444333
No 258
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.48 E-value=3.1e-13 Score=125.61 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=91.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe-CCeE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTR 144 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~ 144 (496)
++|+++|.+|+|||||+|+|+...-. .... .. .+ ...+|.... .+.. ....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~-~~~~------------------~~-~~------~~~~t~~~~--~~~~~~~~~ 53 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHE-EEGA------------------AP-TG------VVETTMKRT--PYPHPKFPN 53 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCC-CCCc------------------cc-cC------ccccccCce--eeecCCCCC
Confidence 68999999999999999999642110 0000 00 00 001222211 1211 1346
Q ss_pred EEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 010985 145 FTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 145 i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~ 217 (496)
++++||||..+ |++. .++..+|++++|.|..-. ......+..+...+.| +++|+||+|+..
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~--~~~~~~d~~l~v~~~~~~---------~~d~~~~~~l~~~~~~-~ilV~nK~D~~~ 121 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEE--MKFSEYDFFIIISSTRFS---------SNDVKLAKAIQCMGKK-FYFVRTKVDRDL 121 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHH--hCccCcCEEEEEeCCCCC---------HHHHHHHHHHHHhCCC-EEEEEecccchh
Confidence 89999999753 3332 235678998887553311 2444556667777777 899999999832
Q ss_pred CCc---------cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccc--cccccccc
Q 010985 218 VNW---------SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL--MGLNMKTR 263 (496)
Q Consensus 218 ~~~---------~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~--~g~gi~~l 263 (496)
.+. .++..+++.+.+.+.++..+.. ..+++++|+. .+.|+..+
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~---~p~v~~vS~~~~~~~~~~~l 175 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS---EPPVFLVSNFDPSDYDFPKL 175 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCCC---CCCEEEEeCCChhhcChHHH
Confidence 211 0123455566666666655543 4579999998 45666554
No 259
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.48 E-value=3.4e-13 Score=127.61 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=87.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE--eeeeEEEE--eC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV--EVGRAHFE--TE 141 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~--~~~~~~~~--~~ 141 (496)
.+|+++|.+|+|||||+++++. +..... . ...|. +.....+. ..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~--~~~~~~--------------------------~----~~~t~~~~~~~~~i~~~~~ 48 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTS--GEYDDH--------------------------A----YDASGDDDTYERTVSVDGE 48 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhc--CCcCcc--------------------------C----cCCCccccceEEEEEECCE
Confidence 4799999999999999999952 211100 0 00111 12222222 24
Q ss_pred CeEEEEEeCCCCcccHhHHhhccc-cCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 216 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~-~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~ 216 (496)
...+.|+||||+..++... ... .+|++++|+|+++... |. ...+.+..+.. .++| +|+|.||+|+.
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~--~~~~~ad~iilV~d~td~~S---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~ 119 (221)
T cd04148 49 ESTLVVIDHWEQEMWTEDS--CMQYQGDAFVVVYSVTDRSS---FE---RASELRIQLRRNRQLEDRP-IILVGNKSDLA 119 (221)
T ss_pred EEEEEEEeCCCcchHHHhH--HhhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhcc
Confidence 5778999999998444332 334 8999999999987531 11 12222333333 2467 89999999984
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 217 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... +-. .++...+.+.. ..+++++||++|.|++++.+
T Consensus 120 ~~~--~v~----~~~~~~~a~~~------~~~~~e~SA~~~~gv~~l~~ 156 (221)
T cd04148 120 RSR--EVS----VQEGRACAVVF------DCKFIETSAGLQHNVDELLE 156 (221)
T ss_pred ccc--eec----HHHHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 221 000 11112222222 34689999999999998643
No 260
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.48 E-value=1.6e-12 Score=123.23 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=95.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~- 141 (496)
...++|+++|..++|||+|+.+++. +..... -.+.+..+. ...+..+
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~--~~F~~~-----------------------------y~pTi~~~~-~~~i~~~~ 58 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAK--DCYPET-----------------------------YVPTVFENY-TAGLETEE 58 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhc--CCCCCC-----------------------------cCCceeeee-EEEEEECC
Confidence 4568999999999999999999852 211110 001111111 1123333
Q ss_pred -CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEeeccCCC
Q 010985 142 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 142 -~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t-~e~~~~~~~--~~~~~~ivviNK~D~~~ 217 (496)
...+.|+||||.+.|-.......+.||++|||+|.+.... |+ .. ...+..+.. -++| +|+|.||+|+..
T Consensus 59 ~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~ 131 (232)
T cd04174 59 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD---SALKKWKAEIMDYCPSTR-ILLIGCKTDLRT 131 (232)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECccccc
Confidence 3668999999999987766677899999999999987531 10 00 111122222 2456 899999999832
Q ss_pred CCccH------HH-HHHHHHHHHHHHHhcCCCccCCeeEEeecccccc-ccccccc
Q 010985 218 VNWSK------ER-YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 265 (496)
Q Consensus 218 ~~~~~------~~-~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~-gi~~l~~ 265 (496)
. ... .. ..-..++...+.+..++. +++.+||++|. |++++..
T Consensus 132 ~-~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~-----~~~EtSAktg~~~V~e~F~ 181 (232)
T cd04174 132 D-LSTLMELSNQKQAPISYEQGCALAKQLGAE-----VYLECSAFTSEKSIHSIFR 181 (232)
T ss_pred c-cchhhhhccccCCcCCHHHHHHHHHHcCCC-----EEEEccCCcCCcCHHHHHH
Confidence 1 000 00 000122444555555431 58999999998 7998644
No 261
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.47 E-value=2.9e-13 Score=118.37 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=89.9
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE-eeeeEEEEe--CCeEEE
Q 010985 70 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFET--ETTRFT 146 (496)
Q Consensus 70 i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~-~~~~~~~~~--~~~~i~ 146 (496)
++|++++|||||+++|...... ......|. +.....+.. .+..+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~--------------------------------~~~~~~t~~~~~~~~~~~~~~~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV--------------------------------PEEYETTIIDFYSKTIEVDGKKVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC--------------------------------CcccccchhheeeEEEEECCEEEEEE
Confidence 5899999999999999633221 00011222 222222222 267899
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHH-----HHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-----HVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e-----~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++|+||+.++.......+..+|++++|+|++.+... .... ........+.| +++++||+|+......
T Consensus 49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~ 120 (157)
T cd00882 49 IWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESF-------ENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVV 120 (157)
T ss_pred EEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHH-------HHHHHHHHHHHHhhccCCCc-EEEEEeccccccccch
Confidence 999999999888877888999999999999986321 1111 11222334566 8999999998433211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.... ........ ...+++++|+.++.|+.++
T Consensus 121 --~~~~----~~~~~~~~-----~~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 121 --SEEE----LAEQLAKE-----LGVPYFETSAKTGENVEEL 151 (157)
T ss_pred --HHHH----HHHHHHhh-----cCCcEEEEecCCCCChHHH
Confidence 1110 01111111 2468999999999999874
No 262
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.46 E-value=1.7e-12 Score=118.64 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=91.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--Ce
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~ 143 (496)
.+|+++|..++|||||+++++. +.... +..+-+..+. ...+..+ ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~--~~f~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~ 49 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAK--DCYPE-----------------------------TYVPTVFENY-TASFEIDEQRI 49 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CcCCC-----------------------------CcCCceEEEE-EEEEEECCEEE
Confidence 5899999999999999999852 11110 0001111111 1223333 35
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t-~e~~~~~~~--~~~~~~ivviNK~D~~~~~~ 220 (496)
.+.|+||||++.|-.......+.+|++|+|+|.+.... |+ .. ...+..+.. -++| +|+|.||+|+... .
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~S---f~---~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~-~ 121 (178)
T cd04131 50 ELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPET---LD---SVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTD-L 121 (178)
T ss_pred EEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHHCCCCC-EEEEEEChhhhcC-h
Confidence 68899999999886666667789999999999987532 11 11 111222222 2456 8999999998321 0
Q ss_pred cH-HHH-----H-HHHHHHHHHHHhcCCCccCCeeEEeeccccccc-ccccc
Q 010985 221 SK-ERY-----D-EIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRV 264 (496)
Q Consensus 221 ~~-~~~-----~-~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~g-i~~l~ 264 (496)
.. ..+ . -..++..++.+..++ .+++.+||++|.| +.++.
T Consensus 122 ~~~~~~~~~~~~~v~~~e~~~~a~~~~~-----~~~~E~SA~~~~~~v~~~F 168 (178)
T cd04131 122 STLMELSHQRQAPVSYEQGCAIAKQLGA-----EIYLECSAFTSEKSVRDIF 168 (178)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHhCC-----CEEEECccCcCCcCHHHHH
Confidence 00 000 0 011233444444442 2689999999995 98853
No 263
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.45 E-value=4.6e-13 Score=127.56 Aligned_cols=86 Identities=23% Similarity=0.256 Sum_probs=66.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
..-+|+++|.|++|||||++.|......+.+. +=+|.......+++++.
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y-------------------------------~FTTl~~VPG~l~Y~ga 110 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADY-------------------------------PFTTLEPVPGMLEYKGA 110 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCcccccc-------------------------------CceecccccceEeecCc
Confidence 35789999999999999999995333222211 22677777788999999
Q ss_pred EEEEEeCCCCccc-------HhHHhhccccCCEEEEEEeCCCCc
Q 010985 144 RFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGE 180 (496)
Q Consensus 144 ~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g~ 180 (496)
.+.|+|+||.-.- -++.++.++.||.+++|+|+....
T Consensus 111 ~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 111 QIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred eEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 9999999995332 355778889999999999998643
No 264
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.43 E-value=1.6e-12 Score=119.78 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=89.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
.+|+++|+.++|||||+++|.. +.... +..+ +..+.-...+...+ .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~-----------------------------~~~~-t~~~~~~~~~~~~~~~~ 49 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPE-----------------------------EYHP-TVFENYVTDCRVDGKPV 49 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCc-----------------------------ccCC-cccceEEEEEEECCEEE
Confidence 4899999999999999999852 21110 0001 11111111233333 4
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~~--~~~~~ivviNK~D~~~~~~ 220 (496)
.+.++||||+..|.......++.+|+++++.|.+.... +. ... ..+..+... .+| +|+|.||+|+.....
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~ 122 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDS---LE---NVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAV 122 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcc
Confidence 57899999998875443345678999999999876421 10 111 112222222 466 899999999843211
Q ss_pred cH-----HHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 221 SK-----ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 221 ~~-----~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. .++.. .++...+.+..+. .+++.+||++|.|++++.+
T Consensus 123 ~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 166 (187)
T cd04129 123 AKEEYRTQRFVP-IQQGKRVAKEIGA-----KKYMECSALTGEGVDDVFE 166 (187)
T ss_pred cccccccCCcCC-HHHHHHHHHHhCC-----cEEEEccCCCCCCHHHHHH
Confidence 11 01111 1122333444432 3689999999999998643
No 265
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.42 E-value=2.6e-12 Score=121.11 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=92.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
.+|+++|..++|||||+.+++. +.... +..+.+..+. ...+..++ .
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~--~~f~~-----------------------------~y~pTi~~~~-~~~~~~~~~~v 49 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK--DAYPG-----------------------------SYVPTVFENY-TASFEIDKRRI 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCC-----------------------------ccCCccccce-EEEEEECCEEE
Confidence 6899999999999999999852 21110 1111111111 12233433 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHH-HHHH--cCCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT--LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~-~~~~--~~~~~~ivviNK~D~~~~~~ 220 (496)
.+.|+||+|++.|-.........+|++|+|+|.+.... |+ .....+. .... -++| +|+|.||+|+...
T Consensus 50 ~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~S---f~---~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~-- 120 (222)
T cd04173 50 ELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPET---LD---SVLKKWQGETQEFCPNAK-VVLVGCKLDMRTD-- 120 (222)
T ss_pred EEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEECcccccc--
Confidence 68889999999987777777889999999999987521 00 1111111 1111 2567 8999999998321
Q ss_pred cHHHHHH--------H-HHHHHHHHHhcCCCccCCeeEEeeccccccc-ccccc
Q 010985 221 SKERYDE--------I-ESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRV 264 (496)
Q Consensus 221 ~~~~~~~--------i-~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~g-i~~l~ 264 (496)
.....+ + .++...+.+.+|. .+++.+||+++.| +.++.
T Consensus 121 -~~~~~~~~~~~~~pIs~e~g~~~ak~~~~-----~~y~E~SAk~~~~~V~~~F 168 (222)
T cd04173 121 -LATLRELSKQRLIPVTHEQGTVLAKQVGA-----VSYVECSSRSSERSVRDVF 168 (222)
T ss_pred -hhhhhhhhhccCCccCHHHHHHHHHHcCC-----CEEEEcCCCcCCcCHHHHH
Confidence 111111 1 1223333444432 3799999999985 98864
No 266
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=2e-12 Score=121.09 Aligned_cols=158 Identities=18% Similarity=0.275 Sum_probs=102.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeee-eEEEE
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFE 139 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~-~~~~~ 139 (496)
..++++||.++|.+|+|||||+|+|......-.+ .-|++.+.. .....
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~-------------------------------~vg~~t~~~~~~~~~ 83 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVS-------------------------------KVGVGTDITTRLRLS 83 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceee-------------------------------ecccCCCchhhHHhh
Confidence 3678899999999999999999999632221110 012222211 12233
Q ss_pred eCCeEEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCC-ceEEEEEe
Q 010985 140 TETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLVVN 211 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~-~~~ivviN 211 (496)
..+..++|+||||..+ |.......+...|++++++++.+... +...+.++.....+. .+++++||
T Consensus 84 ~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL-------~~d~~f~~dVi~~~~~~~~i~~Vt 156 (296)
T COG3596 84 YDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRAL-------GTDEDFLRDVIILGLDKRVLFVVT 156 (296)
T ss_pred ccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccc-------cCCHHHHHHHHHhccCceeEEEEe
Confidence 4568899999999766 66667777889999999999998753 344444455554444 56999999
Q ss_pred eccCCCC--CccH-------H---HHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 212 KMDDHTV--NWSK-------E---RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 212 K~D~~~~--~~~~-------~---~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
..|.... +|+. . ..++-.+.+.+++.. --|++.+|+..++|++.+
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-------V~pV~~~~~r~~wgl~~l 213 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE-------VKPVVAVSGRLPWGLKEL 213 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh-------cCCeEEeccccCccHHHH
Confidence 9998533 2322 1 112222223333333 247888998899999885
No 267
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.3e-12 Score=114.41 Aligned_cols=154 Identities=19% Similarity=0.167 Sum_probs=104.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.-..+|.++|..|+|||-|+-++ ..+...+. ...-+-+|.....++.++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf--~~~~f~e~-----------------------------~~sTIGVDf~~rt~e~~g 55 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRF--KDDTFTES-----------------------------YISTIGVDFKIRTVELDG 55 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhh--ccCCcchh-----------------------------hcceeeeEEEEEEeeecc
Confidence 34689999999999999999877 34433322 223345566666777766
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
.++.++||+|+++|...+.+..+.|+++|+|.|.+.... |+..++..+.+.....-+++ .++|-||+|+....
T Consensus 56 k~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~S---F~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~~- 130 (205)
T KOG0084|consen 56 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQES---FNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEKR- 130 (205)
T ss_pred eEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHH---hhhHHHHHHHhhhhccCCCC-eEEEeeccccHhhe-
Confidence 568999999999999999999999999999999987533 32223333333333334677 67899999983211
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCee-EEeeccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQ-FLPISGLMGLNMKTR 263 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~-~ipiSa~~g~gi~~l 263 (496)
. -..++.+.+....+ .| ++++||+.+.|+++.
T Consensus 131 ---~--v~~~~a~~fa~~~~------~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 131 ---V--VSTEEAQEFADELG------IPIFLETSAKDSTNVEDA 163 (205)
T ss_pred ---e--cCHHHHHHHHHhcC------CcceeecccCCccCHHHH
Confidence 0 01122233444433 34 999999999999874
No 268
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.39 E-value=5.8e-12 Score=118.76 Aligned_cols=150 Identities=16% Similarity=0.207 Sum_probs=90.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEE--E
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF--E 139 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~--~ 139 (496)
....++|+++|++|+|||||+++++. |..... ..+.+..+.....+ .
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~--~~~~~~-----------------------------~~~t~~~~~~~~~~~~~ 54 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLT--GEFEKK-----------------------------YIPTLGVEVHPLKFYTN 54 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHh--CCCCCC-----------------------------CCCccceEEEEEEEEEC
Confidence 34558999999999999999987742 221110 00111122222222 2
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-H-cCCceEEEEEeeccCCC
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T-LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~-~~~~~~ivviNK~D~~~ 217 (496)
.....+.++||||+++|-.........+|++++|+|.+....- . .....+..+. . -++| ++++.||+|+..
T Consensus 55 ~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~---~---~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~ 127 (215)
T PTZ00132 55 CGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITY---K---NVPNWHRDIVRVCENIP-IVLVGNKVDVKD 127 (215)
T ss_pred CeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHH---H---HHHHHHHHHHHhCCCCC-EEEEEECccCcc
Confidence 3457889999999998866665566789999999999875320 0 1111111111 1 2456 788999999832
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.....+ ...+.+.. ...++++|+++|.|+++.
T Consensus 128 ~~~~~~--------~~~~~~~~------~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 128 RQVKAR--------QITFHRKK------NLQYYDISAKSNYNFEKP 159 (215)
T ss_pred ccCCHH--------HHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 211111 11222322 346899999999999874
No 269
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.39 E-value=2e-12 Score=115.90 Aligned_cols=147 Identities=18% Similarity=0.239 Sum_probs=92.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--CeE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 144 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~ 144 (496)
+|+++|..++|||||+++|.. +..+.. ..+-+..+.....+..+ ...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~--~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~ 49 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN--GEFPEN-----------------------------YIPTIGIDSYSKEVSIDGKPVN 49 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--SSTTSS-----------------------------SETTSSEEEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHh--hccccc-----------------------------cccccccccccccccccccccc
Confidence 689999999999999999852 211110 00111123333334443 456
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-cC-CceEEEEEeeccCCC-CCcc
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG-VTKLLLVVNKMDDHT-VNWS 221 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~~-~~~~ivviNK~D~~~-~~~~ 221 (496)
+.|+|++|+.+|-.......+.+|++|+|.|.+.... ++ .....+..+.. .. .++++|+.||.|+.. ...+
T Consensus 50 l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S---~~---~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~ 123 (162)
T PF00071_consen 50 LEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEES---FE---NLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS 123 (162)
T ss_dssp EEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHH---HH---THHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC
T ss_pred ccccccccccccccccccccccccccccccccccccc---cc---ccccccccccccccccccceeeeccccccccccch
Confidence 8999999999987666666789999999999887521 11 11222222222 22 234999999999843 1112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. ++...+.+..+ .+++.+|++++.|+.++
T Consensus 124 ~-------~~~~~~~~~~~------~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 124 V-------EEAQEFAKELG------VPYFEVSAKNGENVKEI 152 (162)
T ss_dssp H-------HHHHHHHHHTT------SEEEEEBTTTTTTHHHH
T ss_pred h-------hHHHHHHHHhC------CEEEEEECCCCCCHHHH
Confidence 2 23334444443 57999999999999985
No 270
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.38 E-value=9.4e-12 Score=115.31 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=64.7
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEeeccCCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e-~~~~~~~--~~~~~~ivviNK~D~~~~ 218 (496)
...+.|+||||++++.. ....+.||++|+|+|.+.... |+ .... .+..+.. -++| +|+|.||+|+...
T Consensus 65 ~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 135 (195)
T cd01873 65 SVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNS---LR---NVKTMWYPEIRHFCPRVP-VILVGCKLDLRYA 135 (195)
T ss_pred EEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCChhH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhcccc
Confidence 46789999999876533 235679999999999987521 10 1111 1122222 2466 8999999998421
Q ss_pred CccHH-------------HHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 219 NWSKE-------------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~~~~~-------------~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+.... ...-..++...+.++.+ ++++.+||++|.|++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~------~~~~E~SAkt~~~V~e~ 187 (195)
T cd01873 136 DLDEVNRARRPLARPIKNADILPPETGRAVAKELG------IPYYETSVVTQFGVKDV 187 (195)
T ss_pred ccchhhhcccccccccccCCccCHHHHHHHHHHhC------CEEEEcCCCCCCCHHHH
Confidence 10000 00001223344444443 47999999999999985
No 271
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.38 E-value=9.1e-12 Score=111.49 Aligned_cols=144 Identities=17% Similarity=0.166 Sum_probs=84.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
++|+++|..++|||||+.+++. +..... . + ++...-...+..++ .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~--~~f~~~----------------------------~--~-~~~~~~~~~i~~~~~~~ 47 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT--GSYVQL----------------------------E--S-PEGGRFKKEVLVDGQSH 47 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--CCCCCC----------------------------C--C-CCccceEEEEEECCEEE
Confidence 4799999999999999998852 211100 0 0 01111112344455 5
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~----~~~~~ivviNK~D~~~~~ 219 (496)
.+.++||+|.+.+ .....+|++++|+|.+.... |+ .....+..+... ++| +++|.||+|+....
T Consensus 48 ~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~s---f~---~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~ 115 (158)
T cd04103 48 LLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEAS---FQ---TVYNLYHQLSSYRNISEIP-LILVGTQDAISESN 115 (158)
T ss_pred EEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcC
Confidence 6889999999753 23467899999999987532 11 112222223222 356 89999999983111
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
...+. .++...+.++.+ .++++.+||++|.|++++
T Consensus 116 --~~~v~--~~~~~~~~~~~~-----~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 116 --PRVID--DARARQLCADMK-----RCSYYETCATYGLNVERV 150 (158)
T ss_pred --CcccC--HHHHHHHHHHhC-----CCcEEEEecCCCCCHHHH
Confidence 11111 111222332221 357999999999999985
No 272
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=3e-12 Score=115.31 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=100.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
.....++|+++|.+++|||.++-++. .+...... ..-+-+|.....++.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~--d~~f~~~~-----------------------------~sTiGIDFk~kti~l 56 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFS--DDSFNTSF-----------------------------ISTIGIDFKIKTIEL 56 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhh--hccCcCCc-----------------------------cceEEEEEEEEEEEe
Confidence 34467899999999999999998773 22211110 112344555555666
Q ss_pred CC--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH----HHHHH---cCCceEEEEEe
Q 010985 141 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKT---LGVTKLLLVVN 211 (496)
Q Consensus 141 ~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~----~~~~~---~~~~~~ivviN 211 (496)
++ ..+.+|||+|++.|...+-+..+.|+.++||+|.... ++-+++ ..... -+++ +++|-|
T Consensus 57 ~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne----------~Sfeni~~W~~~I~e~a~~~v~-~~LvGN 125 (207)
T KOG0078|consen 57 DGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE----------KSFENIRNWIKNIDEHASDDVV-KILVGN 125 (207)
T ss_pred CCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch----------HHHHHHHHHHHHHHhhCCCCCc-EEEeec
Confidence 65 4578899999999999999999999999999998765 222322 22222 2677 788999
Q ss_pred eccCCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 212 KMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 212 K~D~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
|+|+... ..+.+ .-+.+...+| ++|+.+||++|.||++.
T Consensus 126 K~D~~~~R~V~~e-------~ge~lA~e~G------~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 126 KCDLEEKRQVSKE-------RGEALAREYG------IKFFETSAKTNFNIEEA 165 (207)
T ss_pred cccccccccccHH-------HHHHHHHHhC------CeEEEccccCCCCHHHH
Confidence 9998321 11222 2333344444 57999999999999985
No 273
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.34 E-value=3.9e-12 Score=114.61 Aligned_cols=114 Identities=16% Similarity=0.243 Sum_probs=66.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe---C
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---E 141 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~---~ 141 (496)
...|.++|+.|||||+|+..|.+. .... .-+++ .....+.. .
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~--~~~~--------------------------------T~tS~-e~n~~~~~~~~~ 47 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG--KTVP--------------------------------TVTSM-ENNIAYNVNNSK 47 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS--S-----------------------------------B---S-SEEEECCGSSTC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC--CcCC--------------------------------eeccc-cCCceEEeecCC
Confidence 467999999999999999999632 1000 00111 11111112 4
Q ss_pred CeEEEEEeCCCCcccHhHHhhc---cccCCEEEEEEeCCCCccccccCCCCchHHHHHH-HHH----cCCceEEEEEeec
Q 010985 142 TTRFTILDAPGHKSYVPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVML-AKT----LGVTKLLLVVNKM 213 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~---~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~-~~~----~~~~~~ivviNK~ 213 (496)
+..+.++|+|||.+.....+.. +..+.++|+|||++.-. ..+ ..+.+.|.- +.. .+.++++|++||.
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~--~~~---~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQ--KEL---RDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHH--HHH---HHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccch--hhH---HHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 5789999999999987777765 78899999999997421 000 122232221 111 1334499999999
Q ss_pred cCCCC
Q 010985 214 DDHTV 218 (496)
Q Consensus 214 D~~~~ 218 (496)
|+..+
T Consensus 123 Dl~~A 127 (181)
T PF09439_consen 123 DLFTA 127 (181)
T ss_dssp TSTT-
T ss_pred ccccc
Confidence 99654
No 274
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.2e-11 Score=109.36 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=102.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccE--EeeeeEEE
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT--VEVGRAHF 138 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T--~~~~~~~~ 138 (496)
...+..+++++|.-++|||||+++++|..= .+..+.| +|.....+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~f---------------------------------d~~YqATIGiDFlskt~ 64 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKF---------------------------------DNTYQATIGIDFLSKTM 64 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhh---------------------------------cccccceeeeEEEEEEE
Confidence 344458999999999999999999975421 1112333 44445556
Q ss_pred EeCC--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-CC--ceEEEEEeec
Q 010985 139 ETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GV--TKLLLVVNKM 213 (496)
Q Consensus 139 ~~~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-~~--~~~ivviNK~ 213 (496)
.+.+ +.+.|+||+|+++|-.-.-+.++.+.++|+|.|.++.-. |+ +|..-+.-+... |- .-+++|-||.
T Consensus 65 ~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~S---fe---~t~kWi~dv~~e~gs~~viI~LVGnKt 138 (221)
T KOG0094|consen 65 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNS---FE---NTSKWIEDVRRERGSDDVIIFLVGNKT 138 (221)
T ss_pred EEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccch---HH---HHHHHHHHHHhccCCCceEEEEEcccc
Confidence 6655 567899999999998888889999999999999876421 11 444444444433 22 2367789999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 214 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 214 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
|| .+ +..+... +=....+++ +..|+.+||+.|.|+.++.
T Consensus 139 DL--~d--krqvs~e--Eg~~kAkel------~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 139 DL--SD--KRQVSIE--EGERKAKEL------NAEFIETSAKAGENVKQLF 177 (221)
T ss_pred cc--cc--hhhhhHH--HHHHHHHHh------CcEEEEecccCCCCHHHHH
Confidence 99 32 2222111 111223333 3569999999999999753
No 275
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.9e-12 Score=111.59 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=107.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++..+|+++|--+|||||++..| +.|.+.. .-.|+......+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykL--k~~E~vt--------------------------------tvPTiGfnVE~v~y 58 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKL--KLGEIVT--------------------------------TVPTIGFNVETVEY 58 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEee--ccCCccc--------------------------------CCCccccceeEEEE
Confidence 4567799999999999999999887 3333221 22566677778888
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-H--c-CCceEEEEEeeccCC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T--L-GVTKLLLVVNKMDDH 216 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~--~-~~~~~ivviNK~D~~ 216 (496)
.+..++++|..|+.++..-........+++|+|||+++..- -...++.+.... . + +.| ++|+.||.|++
T Consensus 59 kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R------i~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~ 131 (181)
T KOG0070|consen 59 KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER------IEEAKEELHRMLAEPELRNAP-LLVFANKQDLP 131 (181)
T ss_pred cceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH------HHHHHHHHHHHHcCcccCCce-EEEEechhhcc
Confidence 99999999999999998889999999999999999987531 012222222211 1 1 455 89999999996
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 217 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
++ .+. .++...|.-..+. ..+..+-+++|.+|+|+.+-
T Consensus 132 ~a-ls~-------~ei~~~L~l~~l~-~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 132 GA-LSA-------AEITNKLGLHSLR-SRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred cc-CCH-------HHHHhHhhhhccC-CCCcEEeeccccccccHHHH
Confidence 54 232 2233333322222 23567888999999998874
No 276
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.8e-12 Score=112.40 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=101.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
..++.++|..++|||.|+-++. ...+.+.. | .-+-++.+...+..++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~--~krF~~~h----------------------d-------~TiGvefg~r~~~id~k~ 54 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFT--DKRFQPVH----------------------D-------LTIGVEFGARMVTIDGKQ 54 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHh--ccCccccc----------------------c-------ceeeeeeceeEEEEcCce
Confidence 4789999999999999997763 22221111 0 1123344444555554
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~ 219 (496)
.++.++||+||+.|..-+.+..+.|-++|||.|.+.... |. ....+|.-++.. +.. ++++-||+||...
T Consensus 55 IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~s---F~---hL~~wL~D~rq~~~~Nmv-ImLiGNKsDL~~r- 126 (216)
T KOG0098|consen 55 IKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRES---FN---HLTSWLEDARQHSNENMV-IMLIGNKSDLEAR- 126 (216)
T ss_pred EEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhh---HH---HHHHHHHHHHHhcCCCcE-EEEEcchhhhhcc-
Confidence 567899999999999999999999999999999887543 21 222233334433 344 7788999999321
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+--.++-+.+.++.|+ .+..+||++++|+++..
T Consensus 127 -----R~Vs~EEGeaFA~ehgL------ifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 127 -----REVSKEEGEAFAREHGL------IFMETSAKTAENVEEAF 160 (216)
T ss_pred -----ccccHHHHHHHHHHcCc------eeehhhhhhhhhHHHHH
Confidence 12223455666676654 57899999999999854
No 277
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.34 E-value=2.4e-12 Score=122.20 Aligned_cols=169 Identities=18% Similarity=0.173 Sum_probs=116.5
Q ss_pred cchhhhhhhcchhhhccccccccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhh
Q 010985 36 DKMEEVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMA 115 (496)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~ 115 (496)
...+...+++++.+.... +.+.+....+...|+++|.+|||||||+++|. .........++
T Consensus 150 r~kea~lrKeL~~vrrkr-~~r~gr~~~s~pviavVGYTNaGKsTLikaLT-~Aal~p~drLF----------------- 210 (410)
T KOG0410|consen 150 RIKEAQLRKELQRVRRKR-QRRVGREGESSPVIAVVGYTNAGKSTLIKALT-KAALYPNDRLF----------------- 210 (410)
T ss_pred HHHHHHHHHHHHHHHHHH-hhhhccccCCCceEEEEeecCccHHHHHHHHH-hhhcCccchhh-----------------
Confidence 334445566666666655 55567777888999999999999999999996 33333333322
Q ss_pred hhcCCchhhhhcccEEeeeeEEEEe-CCeEEEEEeCCCCccc--------HhHHhhccccCCEEEEEEeCCCCccccccC
Q 010985 116 YIMDTNEEERIKGKTVEVGRAHFET-ETTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFE 186 (496)
Q Consensus 116 ~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~i~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~ 186 (496)
.|.|.......+ +|..+.|.||-|+-.- ...++.-...||++|.|+|.+.+..|
T Consensus 211 -------------ATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae---- 273 (410)
T KOG0410|consen 211 -------------ATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAE---- 273 (410)
T ss_pred -------------eeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHH----
Confidence 344444333333 4677899999995432 34455556789999999999998754
Q ss_pred CCCchHHHHHHHHHcCCc------eEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccc
Q 010985 187 KGGQTREHVMLAKTLGVT------KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNM 260 (496)
Q Consensus 187 ~~~~t~e~~~~~~~~~~~------~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi 260 (496)
.|-...+..++.+|+| .+|=|-||+|.... +.++ +..-.+++||++|+|+
T Consensus 274 --~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~-~~e~---------------------E~n~~v~isaltgdgl 329 (410)
T KOG0410|consen 274 --EQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED-EVEE---------------------EKNLDVGISALTGDGL 329 (410)
T ss_pred --HHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc-cCcc---------------------ccCCccccccccCccH
Confidence 5666778888889886 46778899997322 2211 1122689999999999
Q ss_pred cccc
Q 010985 261 KTRV 264 (496)
Q Consensus 261 ~~l~ 264 (496)
+++.
T Consensus 330 ~el~ 333 (410)
T KOG0410|consen 330 EELL 333 (410)
T ss_pred HHHH
Confidence 9853
No 278
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.31 E-value=9.8e-12 Score=108.89 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=100.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE--eeeeEEE
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV--EVGRAHF 138 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~--~~~~~~~ 138 (496)
+.+..++|.|+|.+|+|||||+|++.+.. +.+ ....|+ |.....+
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~k----------F~~-----------------------qykaTIgadFltKev 51 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKK----------FSQ-----------------------QYKATIGADFLTKEV 51 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHH----------HHH-----------------------HhccccchhheeeEE
Confidence 34667999999999999999999996321 111 112232 2222233
Q ss_pred EeCC--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc------CCceEEEEE
Q 010985 139 ETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVTKLLLVV 210 (496)
Q Consensus 139 ~~~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~------~~~~~ivvi 210 (496)
..++ ..+.++||+|+++|-.--..-.+.||.++||.|.+.... |+ .....+-..+... .-| +||+-
T Consensus 52 ~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~S---fe--~L~~Wr~EFl~qa~~~~Pe~FP-FVilG 125 (210)
T KOG0394|consen 52 QVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKS---FE--NLENWRKEFLIQASPQDPETFP-FVILG 125 (210)
T ss_pred EEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhh---hc--cHHHHHHHHHHhcCCCCCCccc-EEEEc
Confidence 3344 446789999999998777777789999999999876532 11 1111122223222 246 89999
Q ss_pred eeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 211 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 211 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
||+|+... +.+. ........+++.-| ++|.+.+||+.+.|++...
T Consensus 126 NKiD~~~~---~~r~-VS~~~Aq~WC~s~g-----nipyfEtSAK~~~NV~~AF 170 (210)
T KOG0394|consen 126 NKIDVDGG---KSRQ-VSEKKAQTWCKSKG-----NIPYFETSAKEATNVDEAF 170 (210)
T ss_pred ccccCCCC---ccce-eeHHHHHHHHHhcC-----CceeEEecccccccHHHHH
Confidence 99998331 1111 22334455666543 7899999999999998753
No 279
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.30 E-value=9.6e-12 Score=119.65 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=92.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE-eCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-TET 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~-~~~ 142 (496)
-.-.|+++|.||||||||++++......|.+.. =||.......+. ..+
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~AkPKIadYp-------------------------------FTTL~PnLGvV~~~~~ 206 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAKPKIADYP-------------------------------FTTLVPNLGVVRVDGG 206 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcCCcccCCc-------------------------------cccccCcccEEEecCC
Confidence 344689999999999999999975555444332 144444433333 356
Q ss_pred eEEEEEeCCCCc-----------ccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHH-HHHHHH-----HcCCce
Q 010985 143 TRFTILDAPGHK-----------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAK-----TLGVTK 205 (496)
Q Consensus 143 ~~i~liDtpG~~-----------~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e-~~~~~~-----~~~~~~ 205 (496)
..|++-|.||.. +|++. +..+-+.++|||.+...-..- .+..+ ....+. ..+.|
T Consensus 207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrH----IERt~vL~hviD~s~~~~~dp----~~~~~~i~~EL~~Y~~~L~~K~- 277 (369)
T COG0536 207 ESFVVADIPGLIEGASEGVGLGLRFLRH----IERTRVLLHVIDLSPIDGRDP----IEDYQTIRNELEKYSPKLAEKP- 277 (369)
T ss_pred CcEEEecCcccccccccCCCccHHHHHH----HHhhheeEEEEecCcccCCCH----HHHHHHHHHHHHHhhHHhccCc-
Confidence 779999999942 44444 445688999999885421000 01111 111111 12455
Q ss_pred EEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 206 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 206 ~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.+||+||||++ .+.+.++...+.+.... ++ ..+++|||.+++|++.+..
T Consensus 278 ~ivv~NKiD~~---~~~e~~~~~~~~l~~~~---~~-----~~~~~ISa~t~~g~~~L~~ 326 (369)
T COG0536 278 RIVVLNKIDLP---LDEEELEELKKALAEAL---GW-----EVFYLISALTREGLDELLR 326 (369)
T ss_pred eEEEEeccCCC---cCHHHHHHHHHHHHHhc---CC-----CcceeeehhcccCHHHHHH
Confidence 67999999963 35566665555444332 21 1233499999999998754
No 280
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.29 E-value=8e-11 Score=114.86 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=87.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|+.|+|||||+|+|+...- ..... -.+...+...+.++++.....++.++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~-~~~~~--------------------~~~~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKL-IPSDY--------------------PPDPAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCC-ccccC--------------------CCCccccccCCceEEEEEEEEEEECCEE
Confidence 47999999999999999999953211 11000 00000011122234455555566666
Q ss_pred eEEEEEeCCCCcccHhH---------------------Hh-----hcc--ccCCEEEEEEeCCCCccccccCCCCchHHH
Q 010985 143 TRFTILDAPGHKSYVPN---------------------MI-----SGA--SQADIGVLVISARKGEFETGFEKGGQTREH 194 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~---------------------~~-----~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~ 194 (496)
..++++||||..+++.+ .. ..+ ..+|++++++++..... .....+.
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l------~~~D~~~ 136 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGL------KPLDIEF 136 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCC------CHHHHHH
Confidence 56999999997655321 11 111 15789999999875211 1233555
Q ss_pred HHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCC
Q 010985 195 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 241 (496)
Q Consensus 195 ~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~ 241 (496)
+..+.. +++ +|+|+||+|+. ..+.....++.+.+.++..++
T Consensus 137 lk~l~~-~v~-vi~VinK~D~l----~~~e~~~~k~~i~~~l~~~~i 177 (276)
T cd01850 137 MKRLSK-RVN-IIPVIAKADTL----TPEELKEFKQRIMEDIEEHNI 177 (276)
T ss_pred HHHHhc-cCC-EEEEEECCCcC----CHHHHHHHHHHHHHHHHHcCC
Confidence 555553 677 89999999982 344566777778888887653
No 281
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.29 E-value=8.8e-12 Score=104.90 Aligned_cols=150 Identities=20% Similarity=0.228 Sum_probs=106.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
+....+.++|.-+||||||+|... .|... +.-+.|+-.....++.+.
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia--~g~~~-------------------------------edmiptvGfnmrk~tkgn 64 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIA--RGQYL-------------------------------EDMIPTVGFNMRKVTKGN 64 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEe--eccch-------------------------------hhhcccccceeEEeccCc
Confidence 345789999999999999999772 22111 113456666677777788
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHH-HHH---HcCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAK---TLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~-~~~---~~~~~~~ivviNK~D~~~~ 218 (496)
..+.++|.||++.|-....+..+.+|++++||||.++.. + ...++.+. ++. ..|+| ++|.-||.|++++
T Consensus 65 vtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k---~---~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 65 VTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDK---L---EASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGA 137 (186)
T ss_pred eEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCccc---c---hhhHHHHHHHhcchhhcCCc-EEEecccccCccc
Confidence 899999999999999999999999999999999988532 1 12333332 222 24788 8999999999655
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCc--cCCeeEEeeccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNV--KKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~--~~~~~~ipiSa~~g~gi~~l 263 (496)
.++.. +..++|+.. +.++..+.||++...||+..
T Consensus 138 -L~~~~----------li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 138 -LSKIA----------LIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred -ccHHH----------HHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 23221 222333321 24567889999999999874
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.28 E-value=1.1e-10 Score=111.72 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=77.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
.....++|+++|.+|+|||||+|+|+....... ....+.|..........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v------------------------------~~~~~~T~~~~~~~~~~ 76 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAAT------------------------------SAFQSETLRVREVSGTV 76 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCccc------------------------------CCCCCceEEEEEEEEEE
Confidence 455679999999999999999999974322111 01134666666667778
Q ss_pred CCeEEEEEeCCCCcccH------hH----Hhhcc--ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-cCC---c
Q 010985 141 ETTRFTILDAPGHKSYV------PN----MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGV---T 204 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~------~~----~~~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~~~---~ 204 (496)
++..++||||||..+.. .. ..+.+ ...|++++|...+...+ .......+..+.. +|. .
T Consensus 77 ~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~------~~~d~~llk~I~e~fG~~i~~ 150 (249)
T cd01853 77 DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR------DYLDLPLLRAITDSFGPSIWR 150 (249)
T ss_pred CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC------CHHHHHHHHHHHHHhChhhHh
Confidence 89999999999977651 11 11122 25788888865554321 0122334433332 442 3
Q ss_pred eEEEEEeeccCCCC
Q 010985 205 KLLLVVNKMDDHTV 218 (496)
Q Consensus 205 ~~ivviNK~D~~~~ 218 (496)
++|+|+||+|....
T Consensus 151 ~~ivV~T~~d~~~p 164 (249)
T cd01853 151 NAIVVLTHAASSPP 164 (249)
T ss_pred CEEEEEeCCccCCC
Confidence 58999999998543
No 283
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.27 E-value=6.7e-12 Score=106.45 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=70.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|+.++|||||+++|+..... +........+.+..............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP---------------------------DNSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc---------------------------ccccccccCCCcEEEEEEEecCCceEEE
Confidence 6899999999999999999633221 0000111133333333333333445589
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-----CCceEEEEEeecc
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMD 214 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-----~~~~~ivviNK~D 214 (496)
|+|++|...+.......+..+|++|+|+|.++... + .+..+.+..+..+ .+| +|+|.||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s---~---~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPES---L---EYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHH---H---HHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChHH---H---HHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 99999998876654445889999999999987531 0 1111222222222 377 899999998
No 284
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.25 E-value=1.7e-11 Score=114.02 Aligned_cols=201 Identities=13% Similarity=0.161 Sum_probs=108.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcch--------hHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDD--------RTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE 132 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~--------~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~ 132 (496)
..+....|.++|..||||||++.+|......-.. +...+..-.+...-|.+..|..+|..-+.....|++..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 4455678899999999999999999644322100 00111111111112333333344433333444455443
Q ss_pred eeeEEEE-----------eCCeEEEEEeCCCCcccHhHHhh--------ccccCCEEEEEEeCCCCccccccCCCCchHH
Q 010985 133 VGRAHFE-----------TETTRFTILDAPGHKSYVPNMIS--------GASQADIGVLVISARKGEFETGFEKGGQTRE 193 (496)
Q Consensus 133 ~~~~~~~-----------~~~~~i~liDtpG~~~~~~~~~~--------~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e 193 (496)
....... .+...+.||||||+.+...-..+ +...+-++++|||.........|. .....
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM--SNMlY 172 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM--SNMLY 172 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH--HHHHH
Confidence 3221110 12466899999997654221111 224677899999987754432232 12223
Q ss_pred HHHHHHHcCCceEEEEEeeccCCCCCccH------HHHHHHHHHH-----HHHHHhcCCC---ccCCeeEEeeccccccc
Q 010985 194 HVMLAKTLGVTKLLLVVNKMDDHTVNWSK------ERYDEIESKM-----TPFLKASGYN---VKKDVQFLPISGLMGLN 259 (496)
Q Consensus 194 ~~~~~~~~~~~~~ivviNK~D~~~~~~~~------~~~~~i~~~l-----~~~l~~~~~~---~~~~~~~ipiSa~~g~g 259 (496)
...++....+| +||+.||.|+....+.. +.|++..++. ..+.....+. -..+...+.+|+.+|.|
T Consensus 173 AcSilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 173 ACSILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence 34555666889 99999999996555433 3343333320 0011110000 01256789999999999
Q ss_pred ccccc
Q 010985 260 MKTRV 264 (496)
Q Consensus 260 i~~l~ 264 (496)
++++.
T Consensus 252 ~ddf~ 256 (366)
T KOG1532|consen 252 FDDFF 256 (366)
T ss_pred HHHHH
Confidence 99854
No 285
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.24 E-value=8.7e-11 Score=110.63 Aligned_cols=153 Identities=16% Similarity=0.309 Sum_probs=97.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe-CCeEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 145 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~i 145 (496)
+|.++|+.+|||||..+.+...... .+-+.-|.|.+.....+.. +...+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p------------------------------~dT~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP------------------------------RDTLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G------------------------------GGGGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc------------------------------hhccccCCcCCceEEEEecCCCcEE
Confidence 6899999999999999888532221 1112346788887777754 45699
Q ss_pred EEEeCCCCcccHhHH-----hhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCC
Q 010985 146 TILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 146 ~liDtpG~~~~~~~~-----~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~~~~ 218 (496)
+++|+||+..|.... ..-.+.++++|+|+|+.....+..+. .....+..+... +++ +.|++.|||+...
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~---~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLA---YLSDCIEALRQYSPNIK-VFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHH---HHHHHHHHHHHHSTT-E-EEEEEE-CCCS-H
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHH---HHHHHHHHHHHhCCCCe-EEEEEeecccCCH
Confidence 999999998887763 33357899999999999543321111 122223333333 345 8899999999766
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 256 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~ 256 (496)
+..++.++++.+.+.+.+...++. .+.++.+|-+.
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~---~~~~~~TSI~D 161 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIE---DITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-T---SEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc---ceEEEeccCcC
Confidence 666777888888888888877654 57788888755
No 286
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.24 E-value=8e-11 Score=116.58 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=28.8
Q ss_pred CeEEEEEeCCCC----ccc---HhHHhhccccCCEEEEEEeCCC
Q 010985 142 TTRFTILDAPGH----KSY---VPNMISGASQADIGVLVISARK 178 (496)
Q Consensus 142 ~~~i~liDtpG~----~~~---~~~~~~~~~~aD~~ilVvda~~ 178 (496)
...+.|+||||. .++ ....+..++.||++++|||+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 367999999997 333 2345667899999999999974
No 287
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.9e-11 Score=106.01 Aligned_cols=165 Identities=22% Similarity=0.190 Sum_probs=104.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++...|.|+|.-||||||++.++-.. +..+ ......++ --.|.-......+.
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~-----------------------~~~~--~~~l~~~k-i~~tvgLnig~i~v 66 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTD-----------------------FSKA--YGGLNPSK-ITPTVGLNIGTIEV 66 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHH-----------------------HHhh--hcCCCHHH-eecccceeecceee
Confidence 3456789999999999999999887210 0000 00000111 12455566667777
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCc-cccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE-FETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~-~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~ 219 (496)
++.++.|||..|++..-.-.......|+++|+||||.... ++..- .+.+.....-...|+| +++.+||-|+.++
T Consensus 67 ~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~---t~~~~v~~~E~leg~p-~L~lankqd~q~~- 141 (197)
T KOG0076|consen 67 CNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESK---TAFEKVVENEKLEGAP-VLVLANKQDLQNA- 141 (197)
T ss_pred ccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHH---HHHHHHHHHHHhcCCc-hhhhcchhhhhhh-
Confidence 8899999999999877666666778999999999999832 21000 1112223333345889 7889999999433
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
....++...+.. .+..+ ..+.+|.||||++|+|+.+-
T Consensus 142 ---~~~~El~~~~~~-~e~~~---~rd~~~~pvSal~gegv~eg 178 (197)
T KOG0076|consen 142 ---MEAAELDGVFGL-AELIP---RRDNPFQPVSALTGEGVKEG 178 (197)
T ss_pred ---hhHHHHHHHhhh-hhhcC---CccCccccchhhhcccHHHH
Confidence 122233222221 22222 24678999999999999873
No 288
>PLN00023 GTP-binding protein; Provisional
Probab=99.22 E-value=1.7e-10 Score=112.83 Aligned_cols=148 Identities=17% Similarity=0.167 Sum_probs=86.9
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEE
Q 010985 59 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 138 (496)
Q Consensus 59 ~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~ 138 (496)
+......++|+++|..++|||||+++++. +..... ....-|.+.......+
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~--g~F~~~---------------------------~~pTIG~d~~ik~I~~ 65 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVK--GSSIAR---------------------------PPQTIGCTVGVKHITY 65 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhc--CCcccc---------------------------cCCceeeeEEEEEEEE
Confidence 44556678999999999999999999852 111100 0001122222222222
Q ss_pred Ee-------------CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc----
Q 010985 139 ET-------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---- 201 (496)
Q Consensus 139 ~~-------------~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---- 201 (496)
.. ....+.|+||+|++.|....-..++.+|++|+|+|.+..... . .....+..+...
T Consensus 66 ~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SF---e---nL~kWl~eI~~~~~~s 139 (334)
T PLN00023 66 GSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTK---T---SLQKWASEVAATGTFS 139 (334)
T ss_pred CCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHH---H---HHHHHHHHHHHhcccc
Confidence 10 235689999999999987777778899999999999875221 0 111222223222
Q ss_pred -----------CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCC
Q 010985 202 -----------GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 242 (496)
Q Consensus 202 -----------~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 242 (496)
++| +|+|.||+|+....-.........++.+.+.++.|+-
T Consensus 140 ~p~~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 140 APLGSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred cccccccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 256 8999999998321100000012345566677776654
No 289
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.21 E-value=3.3e-10 Score=105.31 Aligned_cols=86 Identities=22% Similarity=0.197 Sum_probs=57.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE-----e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-----T 140 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~-----~ 140 (496)
++|+++|..++|||||+++++. +..... ....-|.+.......+. -
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~--~~f~~~---------------------------~~~Tig~~~~~k~~~~~~~~~~~ 51 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK--NQVLGR---------------------------PSWTVGCSVDVKHHTYKEGTPEE 51 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc--CCCCCC---------------------------CCcceeeeEEEEEEEEcCCCCCC
Confidence 4799999999999999999852 111100 00001222222222221 1
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE 180 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~ 180 (496)
....+.|+||+|+++|........+.+|++|+|+|.+...
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~ 91 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRK 91 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChH
Confidence 2367899999999999776666788999999999998763
No 290
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.21 E-value=1.8e-10 Score=93.30 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=76.4
Q ss_pred CCCCeEEEEEEEEc----------cCCeEEEEEEEEeeeecCCEEEEecC-------C-----ceEEEEEEEEcCccccc
Q 010985 291 PNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPN-------K-----AQVKVLAIYCDDNRVRH 348 (496)
Q Consensus 291 ~~~p~~~~i~~~~~----------~~G~v~~g~v~~G~l~~g~~v~~~p~-------~-----~~~~V~sI~~~~~~v~~ 348 (496)
.++|++|+|.++|. .+|.|+.|++.+|.|++||+|.+.|+ + ...+|.||+..++.+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 46899999999992 57999999999999999999999987 2 35789999999999999
Q ss_pred cCCCCeEEE---EeccCCccCcceeeEEecC
Q 010985 349 AGPGENLRI---RLSGIEEEDILSGFVLSSV 376 (496)
Q Consensus 349 a~aG~~v~~---~l~~~~~~~i~~G~vl~~~ 376 (496)
|.||+.+++ -..++.+.|..+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 5557888899999999875
No 291
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.18 E-value=6.5e-11 Score=101.16 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=94.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 141 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-- 141 (496)
..++|.++|..++|||||+-++. ...+++ +...-+-+|.....+..+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv--~~~fd~-----------------------------~~~~tIGvDFkvk~m~vdg~ 58 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFV--SNTFDD-----------------------------LHPTTIGVDFKVKVMQVDGK 58 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHH--hcccCc-----------------------------cCCceeeeeEEEEEEEEcCc
Confidence 45899999999999999996663 222221 111113334444445554
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHHc----CCceEEEEEeeccCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL----GVTKLLLVVNKMDDH 216 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~~----~~~~~ivviNK~D~~ 216 (496)
..++.|+||+|+++|..-+-+..+.|.++|+|.|.+.... | .-.+++ ..+..+ .+- .++|-||+|..
T Consensus 59 ~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdt---f----~kLd~W~~Eld~Ystn~dii-kmlVgNKiDke 130 (209)
T KOG0080|consen 59 RLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDT---F----VKLDIWLKELDLYSTNPDII-KMLVGNKIDKE 130 (209)
T ss_pred eEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhh---H----HhHHHHHHHHHhhcCCccHh-Hhhhcccccch
Confidence 4678999999999999888889999999999999987532 1 111222 222222 233 24799999972
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 217 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. +|. --.++=..+.+++ .+-|+.+||++.+|+..-
T Consensus 131 s-----~R~-V~reEG~kfAr~h------~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 131 S-----ERV-VDREEGLKFARKH------RCLFIECSAKTRENVQCC 165 (209)
T ss_pred h-----ccc-ccHHHHHHHHHhh------CcEEEEcchhhhccHHHH
Confidence 1 111 1122333344444 356999999999999863
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.18 E-value=2.6e-10 Score=113.04 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=65.2
Q ss_pred EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 139 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
...++.+.|+||+|...--.. .+..||++++|++...|. ....+. ...+.+. -|+|+||+|+...
T Consensus 145 ~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd----------~iq~~k-~gi~E~a-DIiVVNKaDl~~~ 209 (332)
T PRK09435 145 EAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGD----------ELQGIK-KGIMELA-DLIVINKADGDNK 209 (332)
T ss_pred hccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchH----------HHHHHH-hhhhhhh-heEEeehhcccch
Confidence 345789999999998743222 356899999998754441 111111 1122233 2689999998422
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCC-ccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
...+....++...+.-..-. +....|++++||++|.|++++.+
T Consensus 210 ----~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 210 ----TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred ----hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 23344555555555432100 00125899999999999999754
No 293
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.18 E-value=2.7e-10 Score=92.94 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=78.7
Q ss_pred eeEEecCCCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEE
Q 010985 370 GFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 449 (496)
Q Consensus 370 G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~ 449 (496)
|++++.++... +++.|.+++.++... ..+++.++++.+|+++..+.|+|.-+ +. +.+.+|+...
T Consensus 1 G~vl~~~~~~~-~~~~~~~~i~~l~~~-~~~l~~~~~v~~~~Gt~~v~~ri~ll----~~----------~~~~pg~~~~ 64 (97)
T cd04094 1 GDVLADPGSLL-PTRRLDVRLTVLLSA-PRPLKHRQRVHLHHGTSEVLARVVLL----DR----------DELAPGEEAL 64 (97)
T ss_pred CCEEecCCCcC-CceEEEEEEEEECCC-CccCCCCCeEEEEeccceEEEEEEeC----Cc----------cccCCCCEEE
Confidence 78999877443 469999999885422 26799999999999999999998733 21 2388999999
Q ss_pred EEEEECceEEeeeccCcCccceEEEEeCC--cEEEEEEE
Q 010985 450 CRIQVNNSICTEKFADFAQLGRFTLRTEG--KTVAVGKV 486 (496)
Q Consensus 450 v~~~~~~pi~~e~~~~~~~lgrfilr~~g--~tva~G~V 486 (496)
++++|++|+++... .||+||+.+ +|+|+|+|
T Consensus 65 a~l~l~~pl~~~~g------drfilR~~~~~~tiggG~V 97 (97)
T cd04094 65 AQLRLEEPLVALRG------DRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEEECCcEeecCC------CeEEEeeCCCCeEEEeEEC
Confidence 99999999998875 699999998 99999986
No 294
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.18 E-value=3.6e-10 Score=106.67 Aligned_cols=115 Identities=20% Similarity=0.129 Sum_probs=77.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--Ce
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~ 143 (496)
.+|+++|..|+|||||+++|....- .++..+.+............ ..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 54 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-------------------------------PEGYPPTIGNLDPAKTIEPYRRNI 54 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-------------------------------cccCCCceeeeeEEEEEEeCCCEE
Confidence 8999999999999999999952111 11112223333333333333 46
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC---CceEEEEEeeccCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHT 217 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~---~~~~ivviNK~D~~~ 217 (496)
.+.++||+|+.+|-..+-.....++++++++|...... + ...+++....+..+. .+ +++|.||+|+..
T Consensus 55 ~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~---~--~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~ 125 (219)
T COG1100 55 KLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRES---S--DELTEEWLEELRELAPDDVP-ILLVGNKIDLFD 125 (219)
T ss_pred EEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchh---h--hHHHHHHHHHHHHhCCCCce-EEEEeccccccc
Confidence 68999999999998888888899999999999886211 0 012333333444433 66 999999999943
No 295
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.3e-10 Score=104.40 Aligned_cols=147 Identities=20% Similarity=0.211 Sum_probs=94.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.-..+|+++|.+++|||-|+.++....=.++ ...-+-++.....+..++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~-------------------------------SksTIGvef~t~t~~vd~ 60 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLE-------------------------------SKSTIGVEFATRTVNVDG 60 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcc-------------------------------cccceeEEEEeeceeecC
Confidence 3457899999999999999998842211111 111122233333344444
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH----HHHHHc---CCceEEEEEeec
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKTL---GVTKLLLVVNKM 213 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~----~~~~~~---~~~~~ivviNK~ 213 (496)
.+..|+||+|+++|..-+-...+.|-+||||.|.+.. +|.+++ ..++.. +++ +++|-||+
T Consensus 61 k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~----------~Tfenv~rWL~ELRdhad~niv-imLvGNK~ 129 (222)
T KOG0087|consen 61 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRR----------QTFENVERWLKELRDHADSNIV-IMLVGNKS 129 (222)
T ss_pred cEEEEeeecccchhhhccccchhhcccceeEEEEechhH----------HHHHHHHHHHHHHHhcCCCCeE-EEEeecch
Confidence 5678999999999986666667899999999999875 444433 333332 566 78899999
Q ss_pred cCCCCCccHHHHHHHH-HHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 214 DDHTVNWSKERYDEIE-SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 214 D~~~~~~~~~~~~~i~-~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
||.. ...+. ++-+.+.+. ....|+.+||+.+.|++...
T Consensus 130 DL~~-------lraV~te~~k~~Ae~------~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 130 DLNH-------LRAVPTEDGKAFAEK------EGLFFLETSALDATNVEKAF 168 (222)
T ss_pred hhhh-------ccccchhhhHhHHHh------cCceEEEecccccccHHHHH
Confidence 9832 11111 112222222 24579999999999998753
No 296
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=9.1e-11 Score=99.32 Aligned_cols=150 Identities=21% Similarity=0.265 Sum_probs=95.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
..++.++|+.+.|||-|+.+++.. ..++ ....-+-++.+...+...+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~--kfkD-----------------------------dssHTiGveFgSrIinVGgK~ 57 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIEN--KFKD-----------------------------DSSHTIGVEFGSRIVNVGGKT 57 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHh--hhcc-----------------------------cccceeeeeecceeeeecCcE
Confidence 468999999999999999988521 1111 1112233344444444444
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCce--EEEEEeeccCCCCCc
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK--LLLVVNKMDDHTVNW 220 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~--~ivviNK~D~~~~~~ 220 (496)
.++.++||+|+++|..-+.+..+.|-+++||.|++.... |+ ....-+.-++.+--|. +|++-||-|+...
T Consensus 58 vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrds---fn---aLtnWL~DaR~lAs~nIvviL~GnKkDL~~~-- 129 (214)
T KOG0086|consen 58 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDS---FN---ALTNWLTDARTLASPNIVVILCGNKKDLDPE-- 129 (214)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhh---HH---HHHHHHHHHHhhCCCcEEEEEeCChhhcChh--
Confidence 568899999999999989899999999999999987532 11 1112233344444332 5667899998321
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
-+-.+ .+...+..+ +..-+..+|+++|+|+++-
T Consensus 130 R~Vtf----lEAs~FaqE------nel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 130 REVTF----LEASRFAQE------NELMFLETSALTGENVEEA 162 (214)
T ss_pred hhhhH----HHHHhhhcc------cceeeeeecccccccHHHH
Confidence 11111 122222222 2456889999999999873
No 297
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=3.3e-10 Score=102.00 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=85.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
..|.++|..|||||+|+-.|.+.. -+..-+++......+.++....
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs----------------------------------~~~TvtSiepn~a~~r~gs~~~ 84 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS----------------------------------HRGTVTSIEPNEATYRLGSENV 84 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC----------------------------------ccCeeeeeccceeeEeecCcce
Confidence 689999999999999998885321 0112245555666777778889
Q ss_pred EEEeCCCCcccHhHHhhccc---cCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-----H---cCCceEEEEEeecc
Q 010985 146 TILDAPGHKSYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----T---LGVTKLLLVVNKMD 214 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~---~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-----~---~~~~~~ivviNK~D 214 (496)
+|+|.|||.+.......... .+-++|+|||+..-. ...++....+. . .+.+++++++||.|
T Consensus 85 ~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~--------k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqD 156 (238)
T KOG0090|consen 85 TLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL--------KNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQD 156 (238)
T ss_pred EEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc--------hhhHHHHHHHHHHHHhhccccCCCCEEEEecchh
Confidence 99999999988777766665 789999999987532 23333222221 1 23455999999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHH
Q 010985 215 DHTVNWSKERYDEIESKMTPFL 236 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l 236 (496)
+..+.-.+-.-+.+..++..+.
T Consensus 157 l~tAkt~~~Ir~~LEkEi~~lr 178 (238)
T KOG0090|consen 157 LFTAKTAEKIRQQLEKEIHKLR 178 (238)
T ss_pred hhhcCcHHHHHHHHHHHHHHHH
Confidence 9766533333334444454443
No 298
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.16 E-value=2.9e-10 Score=112.88 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=83.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhC--CcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcc---cEEeeee
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSG--QVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG---KTVEVGR 135 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g--~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G---~T~~~~~ 135 (496)
+....+.|+++|++|+|||||+|++....- .+.+. +.++ ...|..+ ...+| +|.+..+
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~----~~k~------------Ra~DELp-qs~~GktItTTePkf 75 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNE----YDKE------------RAQDELP-QSAAGKTIMTTEPKF 75 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccch----hHHh------------HHHhccC-cCCCCCCcccCCCcc
Confidence 455678999999999999999999975421 11111 1010 0111111 11377 6777666
Q ss_pred ---EEEEeC-----CeEEEEEeCCCCccc-------HhH----------------------Hhhccc-cCCEEEEEE-eC
Q 010985 136 ---AHFETE-----TTRFTILDAPGHKSY-------VPN----------------------MISGAS-QADIGVLVI-SA 176 (496)
Q Consensus 136 ---~~~~~~-----~~~i~liDtpG~~~~-------~~~----------------------~~~~~~-~aD~~ilVv-da 176 (496)
..++.. ..++.|+||+|..+- ... +...+. .+|.+|+|. |+
T Consensus 76 vP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDg 155 (492)
T TIGR02836 76 VPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDG 155 (492)
T ss_pred ccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCC
Confidence 333332 368999999994321 111 333355 899999999 88
Q ss_pred CCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 177 RKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 177 ~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
+-+..+..- ......+.+..++..+.| +|+++||.|-
T Consensus 156 si~dI~Re~-y~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 156 TITDIPRED-YVEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred Ccccccccc-chHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 622211000 013456677888899999 9999999993
No 299
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.15 E-value=5e-10 Score=88.64 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=68.5
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceee
Q 010985 297 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 371 (496)
Q Consensus 297 ~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~---~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 371 (496)
..|.++| ++.|+++.|+|.+|.|++|+.+.++|++ ...+|+||+++++++++|.+|+.|++.|++.+ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 4567777 5678999999999999999999999999 67899999999999999999999999999876 899999
Q ss_pred EE
Q 010985 372 VL 373 (496)
Q Consensus 372 vl 373 (496)
++
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 87
No 300
>PTZ00258 GTP-binding protein; Provisional
Probab=99.15 E-value=3.7e-10 Score=113.98 Aligned_cols=86 Identities=20% Similarity=0.134 Sum_probs=62.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
......+|+|+|.||+|||||+|+|..... . ....+++|++.....+..
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~------------------------------v~n~pftTi~p~~g~v~~ 65 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQV-P------------------------------AENFPFCTIDPNTARVNV 65 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcc-c------------------------------ccCCCCCcccceEEEEec
Confidence 345678999999999999999999942211 1 111277888877766655
Q ss_pred CC-----------------eEEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCC
Q 010985 141 ET-----------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISAR 177 (496)
Q Consensus 141 ~~-----------------~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~ 177 (496)
.+ .++.|+||||... .....+..++.+|++++|||+.
T Consensus 66 ~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 66 PDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 3489999999542 3445666788999999999984
No 301
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=9.1e-11 Score=98.79 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=96.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..++.|+|...+||||++-+-+. .||-.+++. --|+.......+-.-....
T Consensus 21 mfKlliiGnssvGKTSfl~ry~d----------------------dSFt~afvs-------TvGidFKvKTvyr~~kRik 71 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYAD----------------------DSFTSAFVS-------TVGIDFKVKTVYRSDKRIK 71 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhc----------------------cccccceee-------eeeeeEEEeEeeecccEEE
Confidence 35899999999999999865531 112112211 1233332222211223467
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHH
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 224 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~ 224 (496)
+.++||+|++.|..-+-...++|++.||+.|.+....-+.++ ...-.+......+.+ +|+|.||+|+.. +|
T Consensus 72 lQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svq---dw~tqIktysw~naq-vilvgnKCDmd~-----eR 142 (193)
T KOG0093|consen 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQ---DWITQIKTYSWDNAQ-VILVGNKCDMDS-----ER 142 (193)
T ss_pred EEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHH---HHHHHheeeeccCce-EEEEecccCCcc-----ce
Confidence 899999999999888888889999999999988753211110 111112222334677 899999999831 12
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 225 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 225 ~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. -..+..+.+...+|| .++..||+.+.|+.++.
T Consensus 143 v-is~e~g~~l~~~LGf------efFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 143 V-ISHERGRQLADQLGF------EFFETSAKENINVKQVF 175 (193)
T ss_pred e-eeHHHHHHHHHHhCh------HHhhhcccccccHHHHH
Confidence 1 112334455666665 48999999999998863
No 302
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.8e-10 Score=96.01 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=100.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeee--EEEEe-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR--AHFET- 140 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~--~~~~~- 140 (496)
-..+|+++|+.++|||-|+.++ ..|.++.. .|.|+-+.+ ...+.
T Consensus 6 flfkivlvgnagvgktclvrrf--tqglfppg-------------------------------qgatigvdfmiktvev~ 52 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRF--TQGLFPPG-------------------------------QGATIGVDFMIKTVEVN 52 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhh--hccCCCCC-------------------------------CCceeeeeEEEEEEEEC
Confidence 4579999999999999999987 45555443 355555443 23344
Q ss_pred -CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 010985 141 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 141 -~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~ 219 (496)
+..++.++||+|+++|..-+.+..+.|+++|||.|.+-... |.-.+.....+......++- -|+|-||+|+ .+
T Consensus 53 gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqps---fdclpewlreie~yan~kvl-kilvgnk~d~--~d 126 (213)
T KOG0095|consen 53 GEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPS---FDCLPEWLREIEQYANNKVL-KILVGNKIDL--AD 126 (213)
T ss_pred CeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcc---hhhhHHHHHHHHHHhhcceE-EEeeccccch--hh
Confidence 45778999999999999999999999999999999875432 22223333333332223333 3679999998 32
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. ++-+++.+-+.... ..-|+.+||+..+|++.|.
T Consensus 127 -rr----evp~qigeefs~~q-----dmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 127 -RR----EVPQQIGEEFSEAQ-----DMYFLETSAKEADNVEKLF 161 (213)
T ss_pred -hh----hhhHHHHHHHHHhh-----hhhhhhhcccchhhHHHHH
Confidence 11 22223322222221 2347889999999999863
No 303
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.11 E-value=6.5e-10 Score=110.96 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=58.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC---
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--- 142 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--- 142 (496)
++|+++|.||+|||||+|+|...... ....+++|++.....+...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~-------------------------------v~nypftTi~p~~G~~~v~d~r~ 51 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE-------------------------------AANYPFCTIEPNVGVVPVPDPRL 51 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe-------------------------------ecccccccccceEEEEEeccccc
Confidence 68999999999999999999532210 11126778777655554433
Q ss_pred --------------eEEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCC
Q 010985 143 --------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISAR 177 (496)
Q Consensus 143 --------------~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~ 177 (496)
..+.|+|+||..+ .....+..++.+|++++|||+.
T Consensus 52 ~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 52 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2589999999543 2345666788999999999985
No 304
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.08 E-value=1.8e-09 Score=110.26 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=54.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE------
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE------ 139 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~------ 139 (496)
++|+|+|.||+|||||+|+|......+ ..-+++|++.......
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~-------------------------------~~y~f~t~~p~~g~~~v~~~~~ 50 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEI-------------------------------ANYPFTTIDPNVGVAYVRVECP 50 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccc-------------------------------cCCCCcceeeeeeeeeeccCCc
Confidence 589999999999999999995321111 0013444444332211
Q ss_pred ------------------eCCeEEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCC
Q 010985 140 ------------------TETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISAR 177 (496)
Q Consensus 140 ------------------~~~~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~ 177 (496)
+....+.|+||||..+ .....++.++.||++++|||+.
T Consensus 51 ~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 51 CKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hhhhhhhhccccccccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 1225689999999532 2335666789999999999997
No 305
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.07 E-value=2.8e-10 Score=96.97 Aligned_cols=154 Identities=16% Similarity=0.244 Sum_probs=95.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..+++++|.--+|||||+=+. -...+....+..+.. +++. . ...++-....
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy--~EnkFn~kHlsTlQA------------SF~~----------k-----k~n~ed~ra~ 63 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRY--VENKFNCKHLSTLQA------------SFQN----------K-----KVNVEDCRAD 63 (218)
T ss_pred eeEEEEEcCCccchhHHHHHH--HHhhcchhhHHHHHH------------HHhh----------c-----ccccccceee
Confidence 578999999999999998444 333333332221110 0100 0 1112223456
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEeeccCCCCCccH
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~--~~~~ivviNK~D~~~~~~~~ 222 (496)
+.|+||+|+++|-.----..+.+|++|||.|.++... |+ .--...+.+-..+| +. +++|-||+|+ +
T Consensus 64 L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdS---Fq--KVKnWV~Elr~mlGnei~-l~IVGNKiDL------E 131 (218)
T KOG0088|consen 64 LHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDS---FQ--KVKNWVLELRTMLGNEIE-LLIVGNKIDL------E 131 (218)
T ss_pred eeeeeccchHhhhccCceEEeCCCceEEEEeccchHH---HH--HHHHHHHHHHHHhCCeeE-EEEecCcccH------H
Confidence 8999999999986655555689999999999887532 21 11111222222334 45 7889999998 2
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 223 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+..+-..++...+....| ...+.+||+.+.||.++..
T Consensus 132 eeR~Vt~qeAe~YAesvG------A~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 132 EERQVTRQEAEAYAESVG------ALYMETSAKDNVGISELFE 168 (218)
T ss_pred HhhhhhHHHHHHHHHhhc------hhheecccccccCHHHHHH
Confidence 222333445555666554 3578999999999998754
No 306
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.07 E-value=4.1e-10 Score=92.54 Aligned_cols=132 Identities=23% Similarity=0.289 Sum_probs=86.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
-+++++|.+++|||||++.|.+.. .-.--|. .++++++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~-----------------------------------~lykKTQ-----Ave~~d~-- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND-----------------------------------TLYKKTQ-----AVEFNDK-- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch-----------------------------------hhhcccc-----eeeccCc--
Confidence 378999999999999999983110 0011111 1222222
Q ss_pred EEEeCCC----CcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 146 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 146 ~liDtpG----~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
-.||||| |+.+....+..+..+|++++|-.++++.. +---..+. .+.++.|-+++|.|++.
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s----------~f~p~f~~-~~~k~vIgvVTK~DLae---- 104 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPES----------RFPPGFLD-IGVKKVIGVVTKADLAE---- 104 (148)
T ss_pred cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccc----------cCCccccc-ccccceEEEEecccccc----
Confidence 2689999 66666666777789999999999998732 11111222 23344889999999942
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.+++ +..+.+|...|- -+++.+|+.+..|++++
T Consensus 105 d~dI----~~~~~~L~eaGa-----~~IF~~s~~d~~gv~~l 137 (148)
T COG4917 105 DADI----SLVKRWLREAGA-----EPIFETSAVDNQGVEEL 137 (148)
T ss_pred hHhH----HHHHHHHHHcCC-----cceEEEeccCcccHHHH
Confidence 1222 344556666663 37899999999999984
No 307
>PRK13768 GTPase; Provisional
Probab=99.03 E-value=1.2e-09 Score=105.37 Aligned_cols=110 Identities=20% Similarity=0.284 Sum_probs=64.6
Q ss_pred CeEEEEEeCCCCccc------HhHHhhcccc--CCEEEEEEeCCCCccccccCCCCchHHHHHHH-----HHcCCceEEE
Q 010985 142 TTRFTILDAPGHKSY------VPNMISGASQ--ADIGVLVISARKGEFETGFEKGGQTREHVMLA-----KTLGVTKLLL 208 (496)
Q Consensus 142 ~~~i~liDtpG~~~~------~~~~~~~~~~--aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~-----~~~~~~~~iv 208 (496)
+..+.++||||+.++ .+...+.+.. ++++++|+|+..+.. +...+....+ ...+.| +|+
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~-------~~d~~~~~~l~~~~~~~~~~~-~i~ 167 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT-------PSDFVSLLLLALSVQLRLGLP-QIP 167 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC-------HHHHHHHHHHHHHHHHHcCCC-EEE
Confidence 347899999996553 2223333333 899999999976532 2222222222 145778 889
Q ss_pred EEeeccCCCCCccHHHHHHHHH---------------------HHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 209 VVNKMDDHTVNWSKERYDEIES---------------------KMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 209 viNK~D~~~~~~~~~~~~~i~~---------------------~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
|+||+|+...+ ..+.+..... ++.+.++..+. ..+++++|++++.|++++.
T Consensus 168 v~nK~D~~~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~----~~~vi~iSa~~~~gl~~L~ 239 (253)
T PRK13768 168 VLNKADLLSEE-ELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL----PVRVIPVSAKTGEGFDELY 239 (253)
T ss_pred EEEhHhhcCch-hHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC----CCcEEEEECCCCcCHHHHH
Confidence 99999984322 1111211111 11122333331 2478999999999999853
No 308
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.01 E-value=3.6e-09 Score=102.98 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=70.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|.+|+|||||+|+|+.......+. + .+.|...........+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~------------------------f------~s~t~~~~~~~~~~~G 85 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSA------------------------F------QSEGLRPMMVSRTRAG 85 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccC------------------------C------CCcceeEEEEEEEECC
Confidence 456899999999999999999997433211110 0 1122222223344578
Q ss_pred eEEEEEeCCCCccc--HhH-Hhhcc------ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-cC---CceEEEE
Q 010985 143 TRFTILDAPGHKSY--VPN-MISGA------SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLLLV 209 (496)
Q Consensus 143 ~~i~liDtpG~~~~--~~~-~~~~~------~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~~---~~~~ivv 209 (496)
..+++|||||..+. ... ....+ ..+|++|+|...+..-+ ....+..+..+.. +| -.++||+
T Consensus 86 ~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~------~~~DkqlLk~Iqe~FG~~iw~~~IVV 159 (313)
T TIGR00991 86 FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRV------DTLDGQVIRAITDSFGKDIWRKSLVV 159 (313)
T ss_pred eEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccC------CHHHHHHHHHHHHHhhhhhhccEEEE
Confidence 99999999997764 111 11111 26899999955433211 0122334433332 23 1458999
Q ss_pred EeeccCC
Q 010985 210 VNKMDDH 216 (496)
Q Consensus 210 iNK~D~~ 216 (496)
+|+.|..
T Consensus 160 fTh~d~~ 166 (313)
T TIGR00991 160 LTHAQFS 166 (313)
T ss_pred EECCccC
Confidence 9999974
No 309
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=7.4e-09 Score=86.74 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=96.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+..+|.++|...|||||++-.|- .+..+. .-.|+-.....+.+.+.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLk--l~~~~~--------------------------------~ipTvGFnvetVtykN~ 61 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLK--LGQSVT--------------------------------TIPTVGFNVETVTYKNV 61 (180)
T ss_pred ccceEEEEecccCCceehhhHHh--cCCCcc--------------------------------cccccceeEEEEEeeee
Confidence 46899999999999999998872 222111 11233334455667789
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~----~~~~~~~ivviNK~D~~~~~ 219 (496)
.++.+|..|..+..+-+........++|+|+|+....- + ...++.+.-+. ....+ ++|..||-|++.+-
T Consensus 62 kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr---~---eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 62 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---EEARNELHRIINDREMRDAI-ILILANKQDLPDAM 134 (180)
T ss_pred EEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhh---H---HHHHHHHHHHhCCHhhhcce-EEEEecCccccccc
Confidence 99999999998888888888888999999999876410 0 11222221111 12345 88999999996543
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 262 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~ 262 (496)
+ .++|.+ ++.--... ...+-+.|.|+.+|+|+.+
T Consensus 135 -~---pqei~d----~leLe~~r-~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 135 -K---PQEIQD----KLELERIR-DRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred -C---HHHHHH----Hhcccccc-CCccEeeccccccchhHHH
Confidence 2 223332 22211111 2356688999999999876
No 310
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.2e-08 Score=103.41 Aligned_cols=147 Identities=25% Similarity=0.318 Sum_probs=104.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcc-cEEeeeeEEEE
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG-KTVEVGRAHFE 139 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G-~T~~~~~~~~~ 139 (496)
...+...++++|+||.|||||+..|+... .+.. ....+| +|+- .
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~-----------tk~t------------------i~~i~GPiTvv------s 109 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRF-----------TKQT------------------IDEIRGPITVV------S 109 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHH-----------HHhh------------------hhccCCceEEe------e
Confidence 44567788999999999999999986321 1100 000122 2222 2
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~ 219 (496)
-..+.++|+.+| +-+..|+.-+..||++||+||++-| | .-.|.+.+.++...|.|+++-|++..|+-.
T Consensus 110 gK~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfG-----f--EMETmEFLnil~~HGmPrvlgV~ThlDlfk-- 177 (1077)
T COG5192 110 GKTRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFG-----F--EMETMEFLNILISHGMPRVLGVVTHLDLFK-- 177 (1077)
T ss_pred cceeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccC-----c--eehHHHHHHHHhhcCCCceEEEEeeccccc--
Confidence 245889999999 4578899999999999999999987 3 368999999999999999999999999832
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL 258 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~ 258 (496)
+...+..++..+...+..--|. ...++.+|+...-
T Consensus 178 -~~stLr~~KKrlkhRfWtEiyq---GaKlFylsgV~nG 212 (1077)
T COG5192 178 -NPSTLRSIKKRLKHRFWTEIYQ---GAKLFYLSGVENG 212 (1077)
T ss_pred -ChHHHHHHHHHHhhhHHHHHcC---CceEEEecccccC
Confidence 3456667766666554433233 4568888875543
No 311
>PTZ00099 rab6; Provisional
Probab=99.00 E-value=1.9e-09 Score=98.15 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=72.0
Q ss_pred eeeeEEEEeC--CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHH-HHHHc--CCceE
Q 010985 132 EVGRAHFETE--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTL--GVTKL 206 (496)
Q Consensus 132 ~~~~~~~~~~--~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~-~~~~~--~~~~~ 206 (496)
+.....+..+ ...+.|+||||++.|...+...++.||++|+|+|.+.... |+ .....+. +.... ++| +
T Consensus 16 ~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~s---f~---~~~~w~~~i~~~~~~~~p-i 88 (176)
T PTZ00099 16 DFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS---FE---NTTKWIQDILNERGKDVI-I 88 (176)
T ss_pred EEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCe-E
Confidence 3333334444 3678899999999998777777899999999999987531 11 1122222 22222 345 7
Q ss_pred EEEEeeccCCCCC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 207 LLVVNKMDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 207 ivviNK~D~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+|.||+|+.... .+.+ +...+.+.. ...++++||++|.|+.++++
T Consensus 89 ilVgNK~DL~~~~~v~~~-------e~~~~~~~~------~~~~~e~SAk~g~nV~~lf~ 135 (176)
T PTZ00099 89 ALVGNKTDLGDLRKVTYE-------EGMQKAQEY------NTMFHETSAKAGHNIKVLFK 135 (176)
T ss_pred EEEEECcccccccCCCHH-------HHHHHHHHc------CCEEEEEECCCCCCHHHHHH
Confidence 8999999983211 1111 122223332 24689999999999998643
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.99 E-value=3e-09 Score=105.36 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=60.9
Q ss_pred EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 139 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
+..++.+.|+||||.... ....+..+|.++++.+...+ ....... -..++.+ .++|+||+|+...
T Consensus 123 ~~~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~----------~el~~~~-~~l~~~~-~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 123 DAAGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG----------DDLQGIK-AGLMEIA-DIYVVNKADGEGA 187 (300)
T ss_pred HhCCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc----------HHHHHHH-HHHhhhc-cEEEEEcccccch
Confidence 345899999999996532 23346678999888665433 1111111 1124567 5789999999432
Q ss_pred CccHHHHHHHHHHH----HHHHHh-cCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKM----TPFLKA-SGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l----~~~l~~-~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ....+...+ ..+.+. .++ ..+++++||++|.|++++.+
T Consensus 188 ~----~~~~~~~~~~~~l~~l~~~~~~~----~~~v~~iSA~~g~Gi~~L~~ 231 (300)
T TIGR00750 188 T----NVTIARLMLALALEEIRRREDGW----RPPVLTTSAVEGRGIDELWD 231 (300)
T ss_pred h----HHHHHHHHHHHHHhhccccccCC----CCCEEEEEccCCCCHHHHHH
Confidence 1 111111111 111111 122 23689999999999998754
No 313
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.99 E-value=1.2e-09 Score=104.16 Aligned_cols=112 Identities=15% Similarity=0.242 Sum_probs=54.5
Q ss_pred EEEEEeCCCCccc------HhHHhhccc--cCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 144 RFTILDAPGHKSY------VPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 144 ~i~liDtpG~~~~------~~~~~~~~~--~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
.+.|+||||+.++ ....+..+. ..=++++++|+..-.....|- ....-.+.....++.| .|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~~~lP-~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLRLELP-HVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHHHTSE-EEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhhCCCC-EEEeeeccCc
Confidence 6899999997665 444444444 345788999987531100000 0011122233447899 7789999999
Q ss_pred CCCCccHHH-----------------HHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 216 HTVNWSKER-----------------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 216 ~~~~~~~~~-----------------~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.... .+.. +.....++..++...+. ..+++|+|+.+++|+.++
T Consensus 169 ~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~f~pls~~~~~~~~~L 228 (238)
T PF03029_consen 169 LSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL----VIRFIPLSSKDGEGMEEL 228 (238)
T ss_dssp S-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS----S---EE-BTTTTTTHHHH
T ss_pred ccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC----CceEEEEECCChHHHHHH
Confidence 5411 1111 12223333344443332 137999999999999884
No 314
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.98 E-value=4.6e-09 Score=98.37 Aligned_cols=98 Identities=11% Similarity=0.139 Sum_probs=56.5
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
+..+.|++|.|.-.. ........+..+.|+|+..+.. .. .......+.+ .++++||+|+... .
T Consensus 102 ~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~---------~~--~~~~~~~~~a-~iiv~NK~Dl~~~--~ 164 (207)
T TIGR00073 102 DIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDD---------KP--LKYPGMFKEA-DLIVINKADLAEA--V 164 (207)
T ss_pred CCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccc---------hh--hhhHhHHhhC-CEEEEEHHHcccc--c
Confidence 457889999992110 0111124566678999986531 11 1112233456 6789999999422 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.....+..+.++ ..+ +..+++++||++|.|+.++.
T Consensus 165 ~~~~~~~~~~l~----~~~----~~~~i~~~Sa~~g~gv~~l~ 199 (207)
T TIGR00073 165 GFDVEKMKADAK----KIN----PEAEIILMSLKTGEGLDEWL 199 (207)
T ss_pred hhhHHHHHHHHH----HhC----CCCCEEEEECCCCCCHHHHH
Confidence 222333333333 221 24689999999999998853
No 315
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=4.3e-09 Score=90.87 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=102.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++.-+++++|--|||||||++.|- ...+. ..-.|.......+.+.+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLK--dDrl~--------------------------------qhvPTlHPTSE~l~Ig~ 63 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLK--DDRLG--------------------------------QHVPTLHPTSEELSIGG 63 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHc--ccccc--------------------------------ccCCCcCCChHHheecC
Confidence 456789999999999999999882 11111 12245666667788889
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~ 218 (496)
..++-+|..||..-.+-....+..+|.++++|||-+..- -...++++..+.. ..+| +++..||+|.+.+
T Consensus 64 m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er------~~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 64 MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQER------FAESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHH------hHHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 999999999998888888888899999999999976532 1244555544433 3578 7889999999765
Q ss_pred CccHHHHHHHHHHHHHHHHhcCC-----CccCCeeEEeecccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGY-----NVKKDVQFLPISGLMGLNMKT 262 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~-----~~~~~~~~ipiSa~~g~gi~~ 262 (496)
- +++.+.... .+.......|. .......++.+|...+.|..+
T Consensus 137 ~-se~~l~~~l-~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e 183 (193)
T KOG0077|consen 137 A-SEDELRFHL-GLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGE 183 (193)
T ss_pred c-cHHHHHHHH-HHHHHhcccccccccCCCCCeEEEEEEEEEccCccce
Confidence 3 444333222 12222221110 011234566777766666443
No 316
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.94 E-value=3e-09 Score=89.75 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=97.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--e
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 143 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~ 143 (496)
.+..|+|.+++|||+|+-++. .. .|..+|++ -+-+|.....++.+| .
T Consensus 9 fkllIigDsgVGKssLl~rF~--dd--------------------tFs~sYit---------TiGvDfkirTv~i~G~~V 57 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFA--DD--------------------TFSGSYIT---------TIGVDFKIRTVDINGDRV 57 (198)
T ss_pred HHHHeecCCcccHHHHHHHHh--hc--------------------ccccceEE---------EeeeeEEEEEeecCCcEE
Confidence 456899999999999997663 11 11122221 122344444455544 6
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCcc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~~~~~~~ 221 (496)
.+.|+||+|.+.|...+-...+..+++++|.|.+.++.- ...++-+..++.. .+|+ ++|-||.|.+.-
T Consensus 58 kLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF------~Nv~rWLeei~~ncdsv~~-vLVGNK~d~~~R--- 127 (198)
T KOG0079|consen 58 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESF------NNVKRWLEEIRNNCDSVPK-VLVGNKNDDPER--- 127 (198)
T ss_pred EEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhh------HhHHHHHHHHHhcCccccc-eecccCCCCccc---
Confidence 788999999999988888888899999999999988542 2334444444432 3563 679999998422
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..-..++.+.+....| +.++.+|++...|++.+.
T Consensus 128 ---rvV~t~dAr~~A~~mg------ie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 128 ---RVVDTEDARAFALQMG------IELFETSAKENENVEAMF 161 (198)
T ss_pred ---eeeehHHHHHHHHhcC------chheehhhhhcccchHHH
Confidence 1112233444444444 458999999999998853
No 317
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.93 E-value=4e-09 Score=88.40 Aligned_cols=151 Identities=21% Similarity=0.253 Sum_probs=97.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEe--eeeEEEE
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE--VGRAHFE 139 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~--~~~~~~~ 139 (496)
.++.++|.++|--||||||++..|- .|..+-.|.. .....++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~------------------------------------sED~~hltpT~GFn~k~v~ 57 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLK------------------------------------SEDPRHLTPTNGFNTKKVE 57 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHc------------------------------------cCChhhccccCCcceEEEe
Confidence 4677999999999999999999883 1111222222 2233455
Q ss_pred eCC-eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHH---cCCceEEEEEeecc
Q 010985 140 TET-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNKMD 214 (496)
Q Consensus 140 ~~~-~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~---~~~~~~ivviNK~D 214 (496)
..+ +.++++|..|++....-+-....+.|.+|+|||+++.-+ |+ .+.+++ .++.. ..+| +.+..||-|
T Consensus 58 ~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr---fe---E~~~el~ELleeeKl~~vp-vlIfankQd 130 (185)
T KOG0074|consen 58 YDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR---FE---EISEELVELLEEEKLAEVP-VLIFANKQD 130 (185)
T ss_pred ecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh---HH---HHHHHHHHHhhhhhhhccc-eeehhhhhH
Confidence 555 899999999999888888888889999999999876532 11 222333 33322 3467 778999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+..+- ..+++...+.- .++. ...+.+-.+|+++++|+...+
T Consensus 131 lltaa----~~eeia~klnl----~~lr-dRswhIq~csals~eg~~dg~ 171 (185)
T KOG0074|consen 131 LLTAA----KVEEIALKLNL----AGLR-DRSWHIQECSALSLEGSTDGS 171 (185)
T ss_pred HHhhc----chHHHHHhcch----hhhh-hceEEeeeCccccccCccCcc
Confidence 84321 22222222111 1111 224567788999999987753
No 318
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.93 E-value=1.6e-08 Score=95.08 Aligned_cols=138 Identities=19% Similarity=0.259 Sum_probs=81.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|..|+||||+.|.|++....-. .......|.........+.++.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~-----------------------------~~~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKS-----------------------------GSSAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS-------------------------------TTTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceee-----------------------------ccccCCcccccceeeeeecceEE
Confidence 5899999999999999999974322100 00113456556566668899999
Q ss_pred EEEeCCCCccc-------HhHHhh----ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcC---CceEEEEE
Q 010985 146 TILDAPGHKSY-------VPNMIS----GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLG---VTKLLLVV 210 (496)
Q Consensus 146 ~liDtpG~~~~-------~~~~~~----~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~---~~~~ivvi 210 (496)
++|||||..+. .+.+.. .....+++|||+.... .. ...+..+..+. .+| .+++||++
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r-~t-------~~~~~~l~~l~~~FG~~~~k~~ivvf 123 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR-FT-------EEDREVLELLQEIFGEEIWKHTIVVF 123 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--S-------HHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc-ch-------HHHHHHHHHHHHHccHHHHhHhhHHh
Confidence 99999996442 222332 2346899999999883 11 23444444433 344 25689999
Q ss_pred eeccCCCCCccHHHHHHHH-HHHHHHHHhcC
Q 010985 211 NKMDDHTVNWSKERYDEIE-SKMTPFLKASG 240 (496)
Q Consensus 211 NK~D~~~~~~~~~~~~~i~-~~l~~~l~~~~ 240 (496)
|..|....+.-++.++.-. ..+..+++.++
T Consensus 124 T~~d~~~~~~~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 124 THADELEDDSLEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp EEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccccHHHHHhccCchhHhHHhhhcC
Confidence 9999743322122222122 34777777775
No 319
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.90 E-value=5.7e-09 Score=104.27 Aligned_cols=147 Identities=21% Similarity=0.304 Sum_probs=78.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhccc---EEeeeeEEEEe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGK---TVEVGRAHFET 140 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~---T~~~~~~~~~~ 140 (496)
..++|||+|.+|+|||||+|+|.+. |.-+. ..-..|+ |.+.. .+..
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl-~~~d~----------------------------~aA~tGv~etT~~~~--~Y~~ 82 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGL-GHEDE----------------------------GAAPTGVVETTMEPT--PYPH 82 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT---TTST----------------------------TS--SSSHSCCTS-E--EEE-
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC-CCCCc----------------------------CcCCCCCCcCCCCCe--eCCC
Confidence 4589999999999999999999421 11110 0011232 23222 2223
Q ss_pred CC-eEEEEEeCCCCc-------ccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 010985 141 ET-TRFTILDAPGHK-------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 212 (496)
Q Consensus 141 ~~-~~i~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK 212 (496)
.. -.++|||.||.. +|++.+ .+..-|+.|+|.+..-. ......+..+..+|.+ +.+|-||
T Consensus 83 p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~rf~---------~ndv~La~~i~~~gK~-fyfVRTK 150 (376)
T PF05049_consen 83 PKFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSERFT---------ENDVQLAKEIQRMGKK-FYFVRTK 150 (376)
T ss_dssp SS-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS-----------HHHHHHHHHHHHTT-E-EEEEE--
T ss_pred CCCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCCCc---------hhhHHHHHHHHHcCCc-EEEEEec
Confidence 33 359999999952 334433 35678987765553321 1233344556667877 8999999
Q ss_pred ccCC--------CCCccHHH-HHHHHHHHHHHHHhcCCCccCCeeEEeecccc
Q 010985 213 MDDH--------TVNWSKER-YDEIESKMTPFLKASGYNVKKDVQFLPISGLM 256 (496)
Q Consensus 213 ~D~~--------~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~ 256 (496)
+|.. +..+++++ ++++.+...+.|++.|.. ..+++-||+..
T Consensus 151 vD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~---~P~VFLVS~~d 200 (376)
T PF05049_consen 151 VDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS---EPQVFLVSSFD 200 (376)
T ss_dssp HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S---S--EEEB-TTT
T ss_pred ccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC---cCceEEEeCCC
Confidence 9951 11233333 567777777777777765 56899999865
No 320
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.90 E-value=4.7e-09 Score=99.56 Aligned_cols=146 Identities=16% Similarity=0.101 Sum_probs=78.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh------CCcchhHHH-HHHHHHhhcC-ccchhhhhhcCCchh--------h--
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLS------GQVDDRTIQ-KYEKEAKDKS-RESWYMAYIMDTNEE--------E-- 124 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~------g~i~~~~~~-~~~~~~~~~g-~~s~~~~~~~d~~~~--------e-- 124 (496)
-..+.++++|+.++|||||+++|+... |.+....+. .+.+...... .-.+......+..+. +
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 456789999999999999999998642 222211100 0000000000 000000000011000 0
Q ss_pred --hhcccEEeeeeEEEEeC-CeEEEEEeCCCCcc--------c----HhH-Hhhccc-cCCEEEEEEeCCCCccccccCC
Q 010985 125 --RIKGKTVEVGRAHFETE-TTRFTILDAPGHKS--------Y----VPN-MISGAS-QADIGVLVISARKGEFETGFEK 187 (496)
Q Consensus 125 --~~~G~T~~~~~~~~~~~-~~~i~liDtpG~~~--------~----~~~-~~~~~~-~aD~~ilVvda~~g~~e~~~~~ 187 (496)
...+++-+.....+... -..++|+||||... . +.. +..++. ..+++++|+||..+..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~------ 177 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA------ 177 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC------
Confidence 01233434333333333 36799999999742 1 222 334455 4569999999988742
Q ss_pred CCch-HHHHHHHHHcCCceEEEEEeeccCC
Q 010985 188 GGQT-REHVMLAKTLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 188 ~~~t-~e~~~~~~~~~~~~~ivviNK~D~~ 216 (496)
.+. .+.+..+...+.+ .|+|+||+|..
T Consensus 178 -~~d~l~ia~~ld~~~~r-ti~ViTK~D~~ 205 (240)
T smart00053 178 -NSDALKLAKEVDPQGER-TIGVITKLDLM 205 (240)
T ss_pred -chhHHHHHHHHHHcCCc-EEEEEECCCCC
Confidence 233 4555666667777 88999999984
No 321
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.89 E-value=4e-09 Score=96.02 Aligned_cols=153 Identities=16% Similarity=0.231 Sum_probs=106.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-e
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 143 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-~ 143 (496)
..+|.++|..|||||++=........+ ..-+..|.|+|+...+...-| .
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a------------------------------~D~~rlg~tidveHsh~RflGnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIA------------------------------RDTRRLGATIDVEHSHVRFLGNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhh------------------------------hhhhccCCcceeeehhhhhhhhh
Confidence 368999999999999987655321111 112348899999888776655 7
Q ss_pred EEEEEeCCCCcccHhHHhhc-----cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC-CceEEEEEeeccCCC
Q 010985 144 RFTILDAPGHKSYVPNMISG-----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMDDHT 217 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~-----~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~-~~~~ivviNK~D~~~ 217 (496)
.++++|+.|++.|+++..+. .+..++.++|.|+...++++++. .....+..+.... .-++++.+.|||+.+
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~---~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH---YYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH---HHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 89999999999999888774 56899999999999988776554 3333333333322 234889999999987
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 256 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~ 256 (496)
.+..+..|++-...+..+-+.++ +..+|+|-+.
T Consensus 131 ~d~r~~if~~r~~~l~~~s~~~~------~~~f~TsiwD 163 (295)
T KOG3886|consen 131 EDARELIFQRRKEDLRRLSRPLE------CKCFPTSIWD 163 (295)
T ss_pred cchHHHHHHHHHHHHHHhccccc------ccccccchhh
Confidence 77666666666555554433332 3467777654
No 322
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=8.4e-09 Score=86.24 Aligned_cols=147 Identities=22% Similarity=0.285 Sum_probs=97.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
-..+-.|+|..++|||-|+..+..+. +..|. ..-+-+..+...++..+
T Consensus 10 yifkyiiigdmgvgkscllhqftekk--------------------------fmadc-----phtigvefgtriievsgq 58 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKK--------------------------FMADC-----PHTIGVEFGTRIIEVSGQ 58 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHH--------------------------HhhcC-----CcccceecceeEEEecCc
Confidence 35678999999999999998874211 11111 12233334444455554
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHH----HHHcCCc--eEEEEEeeccC
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKTLGVT--KLLLVVNKMDD 215 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~----~~~~~~~--~~ivviNK~D~ 215 (496)
.++.++||+|++.|..-+.+..+.|-.+++|.|.... .|..|+.- ++.+-.| .++++-||.|+
T Consensus 59 kiklqiwdtagqerfravtrsyyrgaagalmvyditrr----------stynhlsswl~dar~ltnpnt~i~lignkadl 128 (215)
T KOG0097|consen 59 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNLTNPNTVIFLIGNKADL 128 (215)
T ss_pred EEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhh----------hhhhhHHHHHhhhhccCCCceEEEEecchhhh
Confidence 6678999999999998888888999999999998875 45556532 3333333 36678899998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
... ..-.+ ++.+.+.++.| ..|+..||++|.|++..
T Consensus 129 e~q--rdv~y----eeak~faeeng------l~fle~saktg~nveda 164 (215)
T KOG0097|consen 129 ESQ--RDVTY----EEAKEFAEENG------LMFLEASAKTGQNVEDA 164 (215)
T ss_pred hhc--ccCcH----HHHHHHHhhcC------eEEEEecccccCcHHHH
Confidence 311 11112 23333444443 46899999999999873
No 323
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.88 E-value=5.4e-09 Score=94.30 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCCccc----HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSY----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~ 213 (496)
....+.|+||||..+. ...+...+..+|++|+|+++..... ....+.+........+++|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~-------~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT-------ESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG-------GHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc-------hHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3466999999996442 2334555689999999999998643 1233333333333445589999995
No 324
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=4.2e-09 Score=88.62 Aligned_cols=153 Identities=19% Similarity=0.220 Sum_probs=98.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
...++.++|--|+||+|++=+| +.|..+. .-.|+..+...+.+++-
T Consensus 17 ~e~rililgldGaGkttIlyrl--qvgevvt--------------------------------tkPtigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRL--QVGEVVT--------------------------------TKPTIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEc--ccCcccc--------------------------------cCCCCCcCccccccccc
Confidence 4578999999999999998666 3332221 11344445556667889
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH--HcCCceEEEEEeeccCCCCCcc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~--~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|..|......-+....+..|.+|+|||+++..- +. ..-.+...++. .+.-..++|+.||+|...+-
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dr---is--~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~-- 135 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDR---IS--IAGVELYSMLQEEELQHAKLLVFANKQDYSGAL-- 135 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchhh---hh--hhHHHHHHHhccHhhcCceEEEEeccccchhhh--
Confidence 99999999998888888888899999999999987531 11 11122222222 12224489999999984331
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..+++...|.-..++ +..+.++..||.+|+|++...
T Consensus 136 ------t~~E~~~~L~l~~Lk-~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 136 ------TRSEVLKMLGLQKLK-DRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred ------hHHHHHHHhChHHHh-hheeEEEeeccccccCCcHHH
Confidence 112221111100011 234789999999999999853
No 325
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.85 E-value=1e-08 Score=79.18 Aligned_cols=68 Identities=34% Similarity=0.486 Sum_probs=61.3
Q ss_pred CeEEEEEEEEeeeecCCEEEEecC--Cce---EEEEEEEEcCccccccCCCCeEEEEeccCCccC-cceeeEEe
Q 010985 307 GTVVMGKVESGSVREGDSLLVMPN--KAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEED-ILSGFVLS 374 (496)
Q Consensus 307 G~v~~g~v~~G~l~~g~~v~~~p~--~~~---~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~-i~~G~vl~ 374 (496)
|++++|||++|+|++||+|.+.|. +.. .+|++|+.++....++.+|+.+++.+......+ +++||+|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 789999999999999999999772 244 999999999999999999999999998888888 89999986
No 326
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.84 E-value=4e-08 Score=90.75 Aligned_cols=150 Identities=23% Similarity=0.241 Sum_probs=93.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE-eeeeEEEEeC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFETE-- 141 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~-~~~~~~~~~~-- 141 (496)
..+|+++|.+++|||+|+-++++.. ... + .-.|+ |.-...+..+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~--f~~-----------------------------~--y~ptied~y~k~~~v~~~ 49 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR--FVE-----------------------------D--YDPTIEDSYRKELTVDGE 49 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc--ccc-----------------------------c--cCCCccccceEEEEECCE
Confidence 4789999999999999998775211 110 0 00111 2222223333
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEeeccCCCC-C
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTV-N 219 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~~~~~~ivviNK~D~~~~-~ 219 (496)
...+.|+||+|..+|.......+..+|+-++|.+.++... |+...+.++++..... -.+| +++|.||+|+... .
T Consensus 50 ~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~S---F~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~ 125 (196)
T KOG0395|consen 50 VCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSS---FEEAKQLREQILRVKGRDDVP-IILVGNKCDLERERQ 125 (196)
T ss_pred EEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHH---HHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhccc
Confidence 3567799999999998888888999999999999887532 1111123333311111 2357 8999999999421 1
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+. ++-..+.+.. .++++.+||+...|++++.
T Consensus 126 V~~-------eeg~~la~~~------~~~f~E~Sak~~~~v~~~F 157 (196)
T KOG0395|consen 126 VSE-------EEGKALARSW------GCAFIETSAKLNYNVDEVF 157 (196)
T ss_pred cCH-------HHHHHHHHhc------CCcEEEeeccCCcCHHHHH
Confidence 111 1122222332 3569999999999999864
No 327
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.83 E-value=8.7e-09 Score=96.85 Aligned_cols=173 Identities=19% Similarity=0.122 Sum_probs=85.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhh-cCccc-h-hhhhhcCCchhh---hhcccEEeeeeE-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKD-KSRES-W-YMAYIMDTNEEE---RIKGKTVEVGRA- 136 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~-~g~~s-~-~~~~~~d~~~~e---~~~G~T~~~~~~- 136 (496)
+...|+|.|+||+|||||+++|....-.-.. +-+.- -..+| + ..+.+-|...-. ..+|+=+-....
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~-------~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atR 100 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGK-------RVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATR 100 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---------EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCC-------ceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcC
Confidence 4579999999999999999999633210000 00000 00111 1 123333332211 122322111100
Q ss_pred ---------------EEEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc
Q 010985 137 ---------------HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL 201 (496)
Q Consensus 137 ---------------~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~ 201 (496)
-++..|+.+.|+.|-|.-.-- ..-+..+|..++|+-+..|.- +|..-.-.+.+
T Consensus 101 G~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~-----iQ~~KaGimEi---- 168 (266)
T PF03308_consen 101 GSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDE-----IQAIKAGIMEI---- 168 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCC-----CCTB-TTHHHH----
T ss_pred CCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccH-----HHHHhhhhhhh----
Confidence 123358889999999954321 222467899999999887742 11221222222
Q ss_pred CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCC-CccCCeeEEeeccccccccccccc
Q 010985 202 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY-NVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 202 ~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. |+|+||.|++++ +....+++..+.-..- ...-..|++.+||.+|.|++++.+
T Consensus 169 --aD-i~vVNKaD~~gA-------~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~ 223 (266)
T PF03308_consen 169 --AD-IFVVNKADRPGA-------DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWE 223 (266)
T ss_dssp ---S-EEEEE--SHHHH-------HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHH
T ss_pred --cc-EEEEeCCChHHH-------HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 32 579999997332 2344444444442211 001135899999999999998644
No 328
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.83 E-value=4.8e-09 Score=101.50 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=57.2
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe----
Q 010985 68 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT---- 143 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~---- 143 (496)
|+|+|.||+|||||+|+|...... ....+++|++.....+...+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~-------------------------------~~n~pftTi~p~~g~v~v~d~r~~~ 49 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE-------------------------------AANYPFCTIEPNVGIVPVPDERLDK 49 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc-------------------------------cccccccchhceeeeEEeccchhhh
Confidence 589999999999999999532211 111267787776666555442
Q ss_pred -------------EEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCC
Q 010985 144 -------------RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 178 (496)
Q Consensus 144 -------------~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 178 (496)
.+.|+|+||..+ .....+..++.+|++++|||+..
T Consensus 50 l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 50 LAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 599999999542 23455666789999999999853
No 329
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.82 E-value=2e-08 Score=97.14 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=30.9
Q ss_pred hcchhhhccccccccccCCcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 44 KEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
+.+++....-+..+.....+...-|.|+|.+|||||||+++|+..
T Consensus 83 ~il~~n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 83 DVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344433333333333345567899999999999999999998755
No 330
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.82 E-value=1.9e-08 Score=92.73 Aligned_cols=86 Identities=24% Similarity=0.240 Sum_probs=64.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
..-+|+++|-|.+|||||+..+........ .| .=+|.......+++++-
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA-------------------~y------------eFTTLtcIpGvi~y~ga 109 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAA-------------------SY------------EFTTLTCIPGVIHYNGA 109 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhh-------------------ce------------eeeEEEeecceEEecCc
Confidence 467999999999999999998842211100 00 11566666777889999
Q ss_pred EEEEEeCCCCccc-------HhHHhhccccCCEEEEEEeCCCCc
Q 010985 144 RFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGE 180 (496)
Q Consensus 144 ~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g~ 180 (496)
.+.++|.||.-.- -++.++.++.||+++.|+||+...
T Consensus 110 ~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 110 NIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred eEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 9999999995432 455677788999999999998763
No 331
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.81 E-value=8.2e-09 Score=88.70 Aligned_cols=148 Identities=21% Similarity=0.232 Sum_probs=94.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcch---hHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDD---RTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~---~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..++.++|..-+|||+|+..+ ..|.... +++. .-.++.+ .|-++|.
T Consensus 8 qfrlivigdstvgkssll~~f--t~gkfaelsdptvg------------vdffarl-----ie~~pg~------------ 56 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYF--TEGKFAELSDPTVG------------VDFFARL-----IELRPGY------------ 56 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHH--hcCcccccCCCccc------------hHHHHHH-----HhcCCCc------------
Confidence 368899999999999999877 3443221 1100 0000100 1112222
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHH-----HHHcCC---ceEEEEEeec
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-----AKTLGV---TKLLLVVNKM 213 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~-----~~~~~~---~~~ivviNK~ 213 (496)
..++.|+||+|+++|..-+.+..+++=++++|.|.+.. ..-||... ....+- +-+.+|-.|+
T Consensus 57 riklqlwdtagqerfrsitksyyrnsvgvllvyditnr----------~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKs 126 (213)
T KOG0091|consen 57 RIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR----------ESFEHVENWVKEAAMATQGPDKVVFLLVGHKS 126 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch----------hhHHHHHHHHHHHHHhcCCCCeeEEEEecccc
Confidence 35688999999999999999999999999999998875 23334321 112232 2366788999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 214 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 214 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+. ++ .+-..++-+.+.+.+|. .||.+|+++|.|+++...
T Consensus 127 DL~----Sq--RqVt~EEaEklAa~hgM------~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 127 DLQ----SQ--RQVTAEEAEKLAASHGM------AFVETSAKNGCNVEEAFD 166 (213)
T ss_pred chh----hh--ccccHHHHHHHHHhcCc------eEEEecccCCCcHHHHHH
Confidence 993 11 11223444555666654 599999999999998543
No 332
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.78 E-value=6.6e-08 Score=75.47 Aligned_cols=78 Identities=33% Similarity=0.454 Sum_probs=67.8
Q ss_pred eEEEEEEEEc--cCCeEEEEEEEEeeeecCCEEEEec--CCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCccee
Q 010985 295 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMP--NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 370 (496)
Q Consensus 295 ~~~~i~~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p--~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G 370 (496)
+++.+.++++ ..|.++.|+|.+|+|++||.+.+.| .....+|++|+.++.+++++.||+.+++.+.... ++++|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~--~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD--DIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc--ccCCC
Confidence 3567777773 5789999999999999999999999 7788999999999999999999999999886433 78899
Q ss_pred eEEe
Q 010985 371 FVLS 374 (496)
Q Consensus 371 ~vl~ 374 (496)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9885
No 333
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.76 E-value=9.9e-08 Score=100.36 Aligned_cols=119 Identities=19% Similarity=0.163 Sum_probs=71.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|.+|+|||||+|.|+........ ...+++|. .........+
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vs-----------------------------s~~~~TTr-~~ei~~~idG 165 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTD-----------------------------AFGMGTTS-VQEIEGLVQG 165 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcccccccc-----------------------------CCCCCceE-EEEEEEEECC
Confidence 34578999999999999999999743221110 11245554 3344455678
Q ss_pred eEEEEEeCCCCccc------HhHHhh----ccc--cCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcC---CceE
Q 010985 143 TRFTILDAPGHKSY------VPNMIS----GAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLG---VTKL 206 (496)
Q Consensus 143 ~~i~liDtpG~~~~------~~~~~~----~~~--~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~---~~~~ 206 (496)
..+.+|||||..+. ...++. .+. .+|++|+|+....... .......+..+. .+| .+++
T Consensus 166 ~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~eD~~aLr~Iq~lFG~~Iwk~t 239 (763)
T TIGR00993 166 VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSNDLPLLRTITDVLGPSIWFNA 239 (763)
T ss_pred ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHHHHHHHHHHHHHhCHHhHcCE
Confidence 99999999997753 112222 222 5798888876543210 001122233222 233 3568
Q ss_pred EEEEeeccCCC
Q 010985 207 LLVVNKMDDHT 217 (496)
Q Consensus 207 ivviNK~D~~~ 217 (496)
|||+|..|..+
T Consensus 240 IVVFThgD~lp 250 (763)
T TIGR00993 240 IVTLTHAASAP 250 (763)
T ss_pred EEEEeCCccCC
Confidence 99999999864
No 334
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.76 E-value=3.8e-08 Score=92.39 Aligned_cols=161 Identities=16% Similarity=0.193 Sum_probs=99.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+.+.++++|..|+|||+|+|.++.... ...+++ ..+|-|........
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~-------------~~~t~k---------------~K~g~Tq~in~f~v--- 181 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKN-------------IADTSK---------------SKNGKTQAINHFHV--- 181 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhh-------------hhhhcC---------------CCCccceeeeeeec---
Confidence 35568999999999999999998863221 111111 03677776655544
Q ss_pred CeEEEEEeCCCC----------cccHhHHhhcc---ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEE
Q 010985 142 TTRFTILDAPGH----------KSYVPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 208 (496)
Q Consensus 142 ~~~i~liDtpG~----------~~~~~~~~~~~---~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~iv 208 (496)
+..+.++|.||. .++-+-+...+ .+-=-+.+++|++.+. ++.....+..+...++| +.+
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i-------~~~D~~~i~~~ge~~VP-~t~ 253 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI-------QPTDNPEIAWLGENNVP-MTS 253 (320)
T ss_pred cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC-------CCCChHHHHHHhhcCCC-eEE
Confidence 678999999992 12222222222 2333467889999873 46778888999999999 889
Q ss_pred EEeeccCCCCCc--cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 209 VVNKMDDHTVNW--SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 209 viNK~D~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
|+||||....-. .......+...+..+.... + ....|++.+|+.++.|++.|.
T Consensus 254 vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~-f--~~~~Pw~~~Ssvt~~Grd~Ll 308 (320)
T KOG2486|consen 254 VFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV-F--LVDLPWIYVSSVTSLGRDLLL 308 (320)
T ss_pred eeehhhhhhhccccccCccccceeehhhccccc-e--eccCCceeeecccccCceeee
Confidence 999999731100 0000011111111111111 1 124578889999999999864
No 335
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.74 E-value=1.7e-07 Score=91.42 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=82.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|.++|..|.|||||+|.|+.......... .+.......+..++......++.++
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSS---------------------IPPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccccc---------------------ccccccccccccceeeEEEEeccCCcc
Confidence 47999999999999999999964322111100 0000011123334444444444444
Q ss_pred eEEEEEeCCCCcccHhH---------------------Hhh----cc--ccCCEEEEEEeCCCCccccccCCCCchHHHH
Q 010985 143 TRFTILDAPGHKSYVPN---------------------MIS----GA--SQADIGVLVISARKGEFETGFEKGGQTREHV 195 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~---------------------~~~----~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~ 195 (496)
..++++||||+.+.+.+ -.. .. ...|++|+.|+++.. +.....+
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~---------~L~~~Di 133 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH---------GLKPLDI 133 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS---------SS-HHHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc---------cchHHHH
Confidence 56889999996543111 000 01 246899999998753 2344555
Q ss_pred HHHHHcC--CceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCC
Q 010985 196 MLAKTLG--VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 242 (496)
Q Consensus 196 ~~~~~~~--~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 242 (496)
..++.+. ++ +|-||.|.|. +..+.++..+..+...++..++.
T Consensus 134 ~~mk~Ls~~vN-vIPvIaKaD~----lt~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 134 EFMKRLSKRVN-VIPVIAKADT----LTPEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp HHHHHHTTTSE-EEEEESTGGG----S-HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHhccccc-EEeEEecccc----cCHHHHHHHHHHHHHHHHHcCce
Confidence 6666654 44 8999999998 45778888899999888876543
No 336
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.71 E-value=1.3e-07 Score=87.69 Aligned_cols=98 Identities=16% Similarity=0.228 Sum_probs=56.1
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
+....+|+|.|.. . ..... -..+|.+|.|+|+..+. .... ......... =++++||+|+... .
T Consensus 91 ~~D~iiIEt~G~~-l-~~~~~-~~l~~~~i~vvD~~~~~---------~~~~--~~~~qi~~a-d~~~~~k~d~~~~--~ 153 (199)
T TIGR00101 91 PLEMVFIESGGDN-L-SATFS-PELADLTIFVIDVAAGD---------KIPR--KGGPGITRS-DLLVINKIDLAPM--V 153 (199)
T ss_pred CCCEEEEECCCCC-c-ccccc-hhhhCcEEEEEEcchhh---------hhhh--hhHhHhhhc-cEEEEEhhhcccc--c
Confidence 4567899999931 1 11111 12368899999998763 1111 111112222 1679999999421 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
....+.+.+.++.+ + ...+++++||++|+|++++.
T Consensus 154 ~~~~~~~~~~~~~~----~----~~~~i~~~Sa~~g~gi~el~ 188 (199)
T TIGR00101 154 GADLGVMERDAKKM----R----GEKPFIFTNLKTKEGLDTVI 188 (199)
T ss_pred cccHHHHHHHHHHh----C----CCCCEEEEECCCCCCHHHHH
Confidence 12233333333333 1 24689999999999999853
No 337
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=1.4e-08 Score=86.83 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=71.6
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~~ 219 (496)
..+.|+||+|++.|..-+-.-.+.|-..+|+.|-+..-. | -.++.-+..+.. ..-|.++++-||.|+..
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqS---F---LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-- 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQS---F---LNVRNWLSQLQTHAYCENPDIVLCGNKADLED-- 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHH---H---HHHHHHHHHHHHhhccCCCCEEEEcCccchhh--
Confidence 457899999999998888777889999999999875410 0 122333333333 23577999999999931
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+ ..--.++...+..+.| .|++.+||-+|.|+++..+
T Consensus 139 --~--R~Vs~~qa~~La~kyg------lPYfETSA~tg~Nv~kave 174 (219)
T KOG0081|consen 139 --Q--RVVSEDQAAALADKYG------LPYFETSACTGTNVEKAVE 174 (219)
T ss_pred --h--hhhhHHHHHHHHHHhC------CCeeeeccccCcCHHHHHH
Confidence 1 1112233444555554 5799999999999987543
No 338
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.67 E-value=1.6e-07 Score=89.54 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=60.7
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
.|+.+.||.|-|.-.-- ..-...+|..++|.=+..|.- -|. ...-.+.+-. |+||||+|+.++
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~-------~Q~----iK~GimEiaD-i~vINKaD~~~A-- 204 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDD-------LQG----IKAGIMEIAD-IIVINKADRKGA-- 204 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcH-------HHH----HHhhhhhhhh-eeeEeccChhhH--
Confidence 47889999998853321 111346798888877666521 111 1112233332 579999997433
Q ss_pred cHHHHHHHHHHHHHH---HHhcCCCccCCeeEEeeccccccccccccc
Q 010985 221 SKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~---l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+..+.++...+... ....+|. .|++.+||.+|+|++++.+
T Consensus 205 -~~a~r~l~~al~~~~~~~~~~~W~----ppv~~t~A~~g~Gi~~L~~ 247 (323)
T COG1703 205 -EKAARELRSALDLLREVWRENGWR----PPVVTTSALEGEGIDELWD 247 (323)
T ss_pred -HHHHHHHHHHHHhhcccccccCCC----CceeEeeeccCCCHHHHHH
Confidence 22333333333322 2333443 5899999999999998754
No 339
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.66 E-value=3.2e-07 Score=70.67 Aligned_cols=76 Identities=22% Similarity=0.399 Sum_probs=58.6
Q ss_pred CCeEEEEEEE--EccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCccee
Q 010985 293 GPFRMPIIDK--FKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 370 (496)
Q Consensus 293 ~p~~~~i~~~--~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G 370 (496)
.|.++.|... |...+ ++.|+|..|+|++|..+ .+....+|+||+.+++++++|.+|+.|++.+.|.. ++..|
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eG 76 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEG 76 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCC
Confidence 4556666554 56777 77789999999999999 45567899999999999999999999999999854 78999
Q ss_pred eEEe
Q 010985 371 FVLS 374 (496)
Q Consensus 371 ~vl~ 374 (496)
|+|-
T Consensus 77 DiLy 80 (81)
T PF14578_consen 77 DILY 80 (81)
T ss_dssp -EEE
T ss_pred CEEe
Confidence 9873
No 340
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2.9e-07 Score=90.80 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=52.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE-----
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE----- 139 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~----- 139 (496)
.++++|+|.||+|||||+|+|......+.+. |=+|++.......
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNY-------------------------------PF~TIePN~Giv~v~d~r 50 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANY-------------------------------PFCTIEPNVGVVYVPDCR 50 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCC-------------------------------CcccccCCeeEEecCchH
Confidence 4789999999999999999996433221111 1122222111100
Q ss_pred -------------eCCeEEEEEeCCCCc-------ccHhHHhhccccCCEEEEEEeCC
Q 010985 140 -------------TETTRFTILDAPGHK-------SYVPNMISGASQADIGVLVISAR 177 (496)
Q Consensus 140 -------------~~~~~i~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~ 177 (496)
+--..+.|+|.||.- -.-+.-+.-++.+|++++|||+.
T Consensus 51 l~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 51 LDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred HHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 112458899999942 23455566688999999999996
No 341
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.63 E-value=3.8e-08 Score=89.08 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=43.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++++++|.||+|||||+|+|+..... .....+|+|++.....+
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~------------------------------~~~~~pg~T~~~~~~~~--- 160 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRAC------------------------------NVGATPGVTKSMQEVHL--- 160 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccc------------------------------eecCCCCeEcceEEEEe---
Confidence 345689999999999999999999633221 12234899997665544
Q ss_pred CeEEEEEeCCCC
Q 010985 142 TTRFTILDAPGH 153 (496)
Q Consensus 142 ~~~i~liDtpG~ 153 (496)
+..+.|+||||.
T Consensus 161 ~~~~~l~DtPGi 172 (172)
T cd04178 161 DKKVKLLDSPGI 172 (172)
T ss_pred CCCEEEEECcCC
Confidence 346899999994
No 342
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.61 E-value=4.2e-08 Score=87.62 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=41.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
...+|+++|.+|+|||||+|+|+..... .....+|+|++...... +.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~~ 147 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVC------------------------------KVAPIPGETKVWQYITL---MK 147 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCce------------------------------eeCCCCCeeEeEEEEEc---CC
Confidence 4578999999999999999999643221 12234788887654332 34
Q ss_pred EEEEEeCCCC
Q 010985 144 RFTILDAPGH 153 (496)
Q Consensus 144 ~i~liDtpG~ 153 (496)
.+.|+||||.
T Consensus 148 ~~~liDtPGi 157 (157)
T cd01858 148 RIYLIDCPGV 157 (157)
T ss_pred CEEEEECcCC
Confidence 5889999994
No 343
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.59 E-value=3.8e-07 Score=81.92 Aligned_cols=90 Identities=21% Similarity=0.234 Sum_probs=53.8
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCC-EEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCc----eEEEEEeeccCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT----KLLLVVNKMDDHT 217 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD-~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~----~~ivviNK~D~~~ 217 (496)
..+.||...| ......- -...| .-|+|||..+|.- --+. +-| .=++||||.|+.+
T Consensus 97 ~Dll~iEs~G--NL~~~~s--p~L~d~~~v~VidvteGe~--------~P~K--------~gP~i~~aDllVInK~DLa~ 156 (202)
T COG0378 97 LDLLFIESVG--NLVCPFS--PDLGDHLRVVVIDVTEGED--------IPRK--------GGPGIFKADLLVINKTDLAP 156 (202)
T ss_pred CCEEEEecCc--ceecccC--cchhhceEEEEEECCCCCC--------Cccc--------CCCceeEeeEEEEehHHhHH
Confidence 4678888888 2221111 12345 8899999999852 1110 112 1268999999932
Q ss_pred -CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 218 -VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 218 -~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
++.+-+.+.+-..++ .++.||+.+|+++|+|++++
T Consensus 157 ~v~~dlevm~~da~~~-----------np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 157 YVGADLEVMARDAKEV-----------NPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred HhCccHHHHHHHHHHh-----------CCCCCEEEEeCCCCcCHHHH
Confidence 233333333332222 24679999999999999874
No 344
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.58 E-value=1.2e-07 Score=95.40 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=90.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.-...++.++|.||+||||++|.+....-.+. .| +=+|...-..++.+.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevq-------------------pY------------aFTTksL~vGH~dyk 213 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ-------------------PY------------AFTTKLLLVGHLDYK 213 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccC-------------------Cc------------ccccchhhhhhhhhh
Confidence 34567899999999999999887732111110 01 114444444556666
Q ss_pred CeEEEEEeCCCCccc-------H-hHHhhccc-cCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-----cCCceEE
Q 010985 142 TTRFTILDAPGHKSY-------V-PNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLL 207 (496)
Q Consensus 142 ~~~i~liDtpG~~~~-------~-~~~~~~~~-~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-----~~~~~~i 207 (496)
-..+..+||||.-+- + ...+.++. .--++|++.|-+.. + |++ ..+.+.+... .+.+ +|
T Consensus 214 YlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~-C--GyS----va~QvkLfhsIKpLFaNK~-~I 285 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEM-C--GYS----VAAQVKLYHSIKPLFANKV-TI 285 (620)
T ss_pred eeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhh-h--CCC----HHHHHHHHHHhHHHhcCCc-eE
Confidence 678999999995443 1 12233333 23467889998763 2 222 2333333332 2445 89
Q ss_pred EEEeeccCCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 208 LVVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 208 vviNK~D~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+|+||+|+... +.+++. +++.+.++.. .+++++..|+.+.+|+-..
T Consensus 286 lvlNK~D~m~~edL~~~~-----~~ll~~~~~~-----~~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 286 LVLNKIDAMRPEDLDQKN-----QELLQTIIDD-----GNVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred EEeecccccCccccCHHH-----HHHHHHHHhc-----cCceEEEecccchhceeeH
Confidence 99999998543 333322 2233333332 2578999999999998653
No 345
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8.9e-07 Score=92.53 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=61.3
Q ss_pred EEEEEeCCCCcc---cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKS---YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~---~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
.+.++|.||..- +..........+|+.|||+.|....+ ++..++.....-+.|+++|+.||+|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt--------~sek~Ff~~vs~~KpniFIlnnkwDasas-- 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT--------LSEKQFFHKVSEEKPNIFILNNKWDASAS-- 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH--------HHHHHHHHHhhccCCcEEEEechhhhhcc--
Confidence 589999999543 23333344568999999999987643 55666655555568889999999997321
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL 255 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~ 255 (496)
.++..+.+..++. -|+...+. ...-.++.||++
T Consensus 277 e~ec~e~V~~Qi~-eL~v~~~~-eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 277 EPECKEDVLKQIH-ELSVVTEK-EAADRVFFVSAK 309 (749)
T ss_pred cHHHHHHHHHHHH-hcCcccHh-hhcCeeEEEecc
Confidence 2334444555543 22221111 112357788854
No 346
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.48 E-value=1.7e-07 Score=83.43 Aligned_cols=58 Identities=24% Similarity=0.368 Sum_probs=43.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
....+++++|++|+|||||+|+|+..... .....+|+|++.....+ +
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~---~ 144 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKL------------------------------KVGNVPGTTTSQQEVKL---D 144 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccc------------------------------cccCCCCcccceEEEEe---c
Confidence 45689999999999999999999743221 11233788888766544 3
Q ss_pred eEEEEEeCCCC
Q 010985 143 TRFTILDAPGH 153 (496)
Q Consensus 143 ~~i~liDtpG~ 153 (496)
..+.|+||||.
T Consensus 145 ~~~~liDtPG~ 155 (155)
T cd01849 145 NKIKLLDTPGI 155 (155)
T ss_pred CCEEEEECCCC
Confidence 56999999994
No 347
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.45 E-value=1.5e-06 Score=68.70 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=59.5
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCccee
Q 010985 297 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 370 (496)
Q Consensus 297 ~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G 370 (496)
..|++++ +..|.+.++||++|+|++||.|.+...+...+|..|... ..++++|.|||++++ .|+ .+++.|
T Consensus 3 a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~G 78 (83)
T cd04092 3 ALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGL--KQTRTG 78 (83)
T ss_pred EEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECC--CCcccC
Confidence 3455554 346999999999999999999998776667788888654 478999999999994 665 348899
Q ss_pred eEEec
Q 010985 371 FVLSS 375 (496)
Q Consensus 371 ~vl~~ 375 (496)
|+|+.
T Consensus 79 dtl~~ 83 (83)
T cd04092 79 DTLVT 83 (83)
T ss_pred CEEeC
Confidence 99873
No 348
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.43 E-value=1.2e-06 Score=69.40 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=61.5
Q ss_pred CCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccC
Q 010985 293 GPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEED 366 (496)
Q Consensus 293 ~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~ 366 (496)
.||.+.|..+. +..|.+.++||++|+|+.||.|.+.. ....+|..|... ..++++|.|||+|++ .++ .+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai--~gl--~~ 76 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAIL--TGL--KG 76 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEE--ECC--CC
Confidence 57888888876 35699999999999999999998755 455677788664 468899999999984 555 34
Q ss_pred cceeeEEe
Q 010985 367 ILSGFVLS 374 (496)
Q Consensus 367 i~~G~vl~ 374 (496)
++.|++|+
T Consensus 77 ~~~Gdtl~ 84 (85)
T cd03690 77 LRVGDVLG 84 (85)
T ss_pred CcCccccC
Confidence 77898875
No 349
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.43 E-value=3.1e-06 Score=67.31 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=60.2
Q ss_pred EEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc---CccccccCCCCeEEEEeccCC-ccCcce
Q 010985 296 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIE-EEDILS 369 (496)
Q Consensus 296 ~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~---~~~v~~a~aG~~v~~~l~~~~-~~~i~~ 369 (496)
.+.++.+. +..|.++++||++|+|+.||.+++...+...+|..|... +.+++++.|||++.+. .++. ..+++.
T Consensus 2 ~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~~~ 80 (86)
T cd03699 2 RALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDARV 80 (86)
T ss_pred EEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCcccc
Confidence 45566654 346999999999999999999998776666777777754 4688999999999973 2221 245889
Q ss_pred eeEEec
Q 010985 370 GFVLSS 375 (496)
Q Consensus 370 G~vl~~ 375 (496)
|++|+.
T Consensus 81 Gdtl~~ 86 (86)
T cd03699 81 GDTITL 86 (86)
T ss_pred ccEeeC
Confidence 999863
No 350
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.42 E-value=5.7e-08 Score=84.82 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=91.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++++|+|.-.+||||++.+.. .|.+..+.- .+ -|+..-.....+..++
T Consensus 18 e~aiK~vivGng~VGKssmiqryC--kgifTkdyk------------kt---------------Igvdflerqi~v~~Ed 68 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKDYK------------KT---------------IGVDFLERQIKVLIED 68 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHh--ccccccccc------------cc---------------cchhhhhHHHHhhHHH
Confidence 345899999999999999998763 333322210 00 0111000111122345
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH--HHcCCceEEEEEeeccCCCCCc
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA--KTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~--~~~~~~~~ivviNK~D~~~~~~ 220 (496)
..+.++||+|+++|=.-+....+.|.+.+||.+.++... |+ .+.+..... ..-.+| .++|-||+|+ .+.
T Consensus 69 vr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~S---Fe---a~~~w~~kv~~e~~~IP-tV~vqNKIDl--ved 139 (246)
T KOG4252|consen 69 VRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYS---FE---ATLEWYNKVQKETERIP-TVFVQNKIDL--VED 139 (246)
T ss_pred HHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHH---HH---HHHHHHHHHHHHhccCC-eEEeeccchh--hHh
Confidence 667899999999997776677788899999999876421 11 222222111 123588 7789999999 321
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+. --..++..+.+.+ ...++.+|++..-|+...
T Consensus 140 s~----~~~~evE~lak~l------~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 140 SQ----MDKGEVEGLAKKL------HKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred hh----cchHHHHHHHHHh------hhhhhhhhhhhhhhhHHH
Confidence 21 1122333333333 245788999998888764
No 351
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.42 E-value=1.9e-06 Score=67.99 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=59.6
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceee
Q 010985 298 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 371 (496)
Q Consensus 298 ~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 371 (496)
.|+++. +..|.++++||++|+|++||.|.+...+...+|.+|... ..+++++.|||++.+ .|++ +++.|+
T Consensus 4 ~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~~--~~~~Gd 79 (83)
T cd04088 4 LVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGLK--DTATGD 79 (83)
T ss_pred EEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECCC--CCccCC
Confidence 445544 246999999999999999999998887777888888664 468899999999996 6654 388999
Q ss_pred EEec
Q 010985 372 VLSS 375 (496)
Q Consensus 372 vl~~ 375 (496)
++++
T Consensus 80 tl~~ 83 (83)
T cd04088 80 TLCD 83 (83)
T ss_pred EeeC
Confidence 9863
No 352
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.42 E-value=5.5e-08 Score=80.70 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=86.7
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--CeEEEE
Q 010985 70 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTRFTI 147 (496)
Q Consensus 70 i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~l 147 (496)
++|....|||-|+=+. +.|++-... ++ .-+-+|....-+..+ ..++.+
T Consensus 2 llgds~~gktcllir~--kdgafl~~~-------------------fi---------stvgid~rnkli~~~~~kvklqi 51 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRF--KDGAFLAGN-------------------FI---------STVGIDFRNKLIDMDDKKVKLQI 51 (192)
T ss_pred ccccCccCceEEEEEe--ccCceecCc-------------------ee---------eeeeeccccceeccCCcEEEEEE
Confidence 5799999999987443 444432211 00 112223322233333 456889
Q ss_pred EeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCCccHHH
Q 010985 148 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSKER 224 (496)
Q Consensus 148 iDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~~~~~~ 224 (496)
+||+|++.|..-+-...+.||..+|+.|...... |+ ..+..+..+... .+. +.++-||+|+... +
T Consensus 52 wdtagqerfrsvt~ayyrda~allllydiankas---fd---n~~~wlsei~ey~k~~v~-l~llgnk~d~a~e-----r 119 (192)
T KOG0083|consen 52 WDTAGQERFRSVTHAYYRDADALLLLYDIANKAS---FD---NCQAWLSEIHEYAKEAVA-LMLLGNKCDLAHE-----R 119 (192)
T ss_pred eeccchHHHhhhhHhhhcccceeeeeeecccchh---HH---HHHHHHHHHHHHHHhhHh-Hhhhccccccchh-----h
Confidence 9999999999999899999999999999765421 11 222222222222 234 5679999998321 1
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 225 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 225 ~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.- -.++=+.+.+.. .+||..+||++|-|++..
T Consensus 120 ~v-~~ddg~kla~~y------~ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 120 AV-KRDDGEKLAEAY------GIPFMETSAKTGFNVDLA 151 (192)
T ss_pred cc-ccchHHHHHHHH------CCCceeccccccccHhHH
Confidence 00 001112222333 368999999999999863
No 353
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.37 E-value=1e-05 Score=69.12 Aligned_cols=112 Identities=25% Similarity=0.213 Sum_probs=73.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEe-eeeEEEEeC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VGRAHFETE 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~-~~~~~~~~~ 141 (496)
-+..+|+++|.-.+|||.++..|+|-.-..... ---|+. +-...++++
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e-------------------------------~~pTiEDiY~~svet~ 55 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE-------------------------------LHPTIEDIYVASVETD 55 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCc-------------------------------cccchhhheeEeeecC
Confidence 356799999999999999999998644332211 111221 112233332
Q ss_pred ---CeEEEEEeCCCCccc-HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH--------cCCceEEEE
Q 010985 142 ---TTRFTILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--------LGVTKLLLV 209 (496)
Q Consensus 142 ---~~~i~liDtpG~~~~-~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~--------~~~~~~ivv 209 (496)
...+.|.||+|...+ ..--...++.+|+.+||.|..+.. ....+.+++. -.+| ++|.
T Consensus 56 rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e----------Sf~rv~llKk~Idk~KdKKEvp-iVVL 124 (198)
T KOG3883|consen 56 RGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE----------SFQRVELLKKEIDKHKDKKEVP-IVVL 124 (198)
T ss_pred CChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH----------HHHHHHHHHHHHhhcccccccc-EEEE
Confidence 356899999999998 333344578899999999988753 2222222222 2467 8999
Q ss_pred EeeccCC
Q 010985 210 VNKMDDH 216 (496)
Q Consensus 210 iNK~D~~ 216 (496)
.||.|+.
T Consensus 125 aN~rdr~ 131 (198)
T KOG3883|consen 125 ANKRDRA 131 (198)
T ss_pred echhhcc
Confidence 9999993
No 354
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.37 E-value=3.5e-06 Score=79.76 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=56.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
...+...|+|+|++++|||||+|+|+.....+.-. + ....+|..+-......
T Consensus 3 ~~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~-----------------------~-----~~~~~T~gi~~~~~~~ 54 (224)
T cd01851 3 AGFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVM-----------------------D-----TSQQTTKGIWMWSVPF 54 (224)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEec-----------------------C-----CCCCCccceEEEeccc
Confidence 34567789999999999999999997432111100 0 0022333333232222
Q ss_pred ---CCeEEEEEeCCCCccc------HhHHhhcccc--CCEEEEEEeCCC
Q 010985 141 ---ETTRFTILDAPGHKSY------VPNMISGASQ--ADIGVLVISARK 178 (496)
Q Consensus 141 ---~~~~i~liDtpG~~~~------~~~~~~~~~~--aD~~ilVvda~~ 178 (496)
.+..+.|+||||..+. ....+.++.. +|++|+.++...
T Consensus 55 ~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 55 KLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 3688999999996443 2333455554 899999988764
No 355
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.37 E-value=3.2e-06 Score=72.39 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=106.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhh--hcccEEeeeeEEEE
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER--IKGKTVEVGRAHFE 139 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~--~~G~T~~~~~~~~~ 139 (496)
..-.++|+++|.+..|||||+-.-. +.. ..+|. ..|+..--...++.
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV---~~~----------------------------~de~~~q~~GvN~mdkt~~i~ 65 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYV---QNE----------------------------YDEEYTQTLGVNFMDKTVSIR 65 (205)
T ss_pred cceEEEEEeecccccCceeeehhhh---cch----------------------------hHHHHHHHhCccceeeEEEec
Confidence 3346899999999999999984432 111 11111 12222111122222
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC---CceEEEEEeeccCC
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDH 216 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~---~~~~ivviNK~D~~ 216 (496)
-....+.++|..|.++|+...--+...+-+++++.|-+...+- ...++-.+.++.++ +| |+|-+|-|+-
T Consensus 66 ~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TL------nSi~~WY~QAr~~NktAiP--ilvGTKyD~f 137 (205)
T KOG1673|consen 66 GTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTL------NSIKEWYRQARGLNKTAIP--ILVGTKYDLF 137 (205)
T ss_pred ceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHH------HHHHHHHHHHhccCCccce--EEeccchHhh
Confidence 2346688999999999988777777888899999998876431 23345556666655 56 5799999973
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 217 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+.+.+....+..+.+.+.+.. +.+.+.+|+-+.-|+.+..
T Consensus 138 -i~lp~e~Q~~I~~qar~YAk~m------nAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 138 -IDLPPELQETISRQARKYAKVM------NASLFFCSTSHSINVQKIF 178 (205)
T ss_pred -hcCCHHHHHHHHHHHHHHHHHh------CCcEEEeeccccccHHHHH
Confidence 5566677777888888887776 3568889999999988753
No 356
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.36 E-value=7.3e-06 Score=80.50 Aligned_cols=143 Identities=18% Similarity=0.300 Sum_probs=87.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCc-hhhhhcccEEeeeeEEEEeCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN-EEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~ 142 (496)
-.++|-++|..|.||||++|.|+... ..++. ..+.. +....+++.+......+.-++
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~-l~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~l~e~~ 79 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTS-LVDET---------------------EIDDIRAEGTSPTLEIKITKAELEEDG 79 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhh-ccCCC---------------------CccCcccccCCcceEEEeeeeeeecCC
Confidence 45899999999999999999997541 11100 00000 111234455555555555555
Q ss_pred --eEEEEEeCCCCcccHhH-------------Hhh-----------c--c--ccCCEEEEEEeCCCCccccccCCCCchH
Q 010985 143 --TRFTILDAPGHKSYVPN-------------MIS-----------G--A--SQADIGVLVISARKGEFETGFEKGGQTR 192 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~-------------~~~-----------~--~--~~aD~~ilVvda~~g~~e~~~~~~~~t~ 192 (496)
..+++|||||.-+++.+ ... . . ...+++|+.+-++.. +...
T Consensus 80 ~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh---------~l~~ 150 (373)
T COG5019 80 FHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH---------GLKP 150 (373)
T ss_pred eEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC---------CCCH
Confidence 45789999996665221 110 0 1 146889999987643 2233
Q ss_pred HHHHHHHHcC-CceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCC
Q 010985 193 EHVMLAKTLG-VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 241 (496)
Q Consensus 193 e~~~~~~~~~-~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~ 241 (496)
-.+..++.+. .-.+|-||-|.|. +..+.+...++.+.+.+...++
T Consensus 151 ~DIe~Mk~ls~~vNlIPVI~KaD~----lT~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 151 LDIEAMKRLSKRVNLIPVIAKADT----LTDDELAEFKERIREDLEQYNI 196 (373)
T ss_pred HHHHHHHHHhcccCeeeeeecccc----CCHHHHHHHHHHHHHHHHHhCC
Confidence 3334444432 2238899999998 5667788888889888887654
No 357
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.34 E-value=4.9e-07 Score=83.44 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=42.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..+++++|.+|+|||||+|+|+.....-.. .. ........+|+|++.....+. ..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~-----------~~-----------~~~~~~~~~gtT~~~~~~~~~---~~ 181 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKK-----------LK-----------DLLTTSPIPGTTLDLIKIPLG---NG 181 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccc-----------cc-----------cccccCCCCCeeeeeEEEecC---CC
Confidence 468999999999999999999743211000 00 000122347999998766663 25
Q ss_pred EEEEeCCCC
Q 010985 145 FTILDAPGH 153 (496)
Q Consensus 145 i~liDtpG~ 153 (496)
+.|+||||.
T Consensus 182 ~~~~DtPG~ 190 (190)
T cd01855 182 KKLYDTPGI 190 (190)
T ss_pred CEEEeCcCC
Confidence 899999994
No 358
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.34 E-value=4.9e-06 Score=66.16 Aligned_cols=76 Identities=22% Similarity=0.417 Sum_probs=58.5
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEEc----CccccccCCCCeEEEEeccCCcc
Q 010985 295 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 365 (496)
Q Consensus 295 ~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~---~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~ 365 (496)
|++.|+++. +..|.++++||++|+|++||.|.+...+ ...+|.+|... ..+++++.|||+++ +.++ .
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~--i~gl--~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVA--IAGI--E 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEE--EECC--C
Confidence 456677664 4579999999999999999999876553 24677787543 46889999999996 5665 3
Q ss_pred CcceeeEEe
Q 010985 366 DILSGFVLS 374 (496)
Q Consensus 366 ~i~~G~vl~ 374 (496)
+++.|++|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 588999885
No 359
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.33 E-value=1.3e-06 Score=89.88 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=90.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.++.++|+++|..|+|||||+-.|+...=. +. + -.+-+-+|+- ..+.-+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~--~~---------------------V-----P~rl~~i~IP---advtPe 54 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFV--DA---------------------V-----PRRLPRILIP---ADVTPE 54 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcc--cc---------------------c-----cccCCccccC---CccCcC
Confidence 456799999999999999999888632210 00 0 0011223332 233345
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-----CCceEEEEEeeccCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMDDH 216 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-----~~~~~ivviNK~D~~ 216 (496)
....+++||+-..+-.......++.||++++|.+.++..+-. .-+..-+=+.+.+ ++| +|+|-||+|..
T Consensus 55 ~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D-----~ist~WLPlir~~~~~~~~~P-VILvGNK~d~~ 128 (625)
T KOG1707|consen 55 NVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVD-----RISTKWLPLIRQLFGDYHETP-VILVGNKSDNG 128 (625)
T ss_pred cCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhh-----hhhhhhhhhhhcccCCCccCC-EEEEeeccCCc
Confidence 567999999976665556677789999999999887753211 1111222233333 467 99999999983
Q ss_pred CCCccH--H-HHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 217 TVNWSK--E-RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 217 ~~~~~~--~-~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. ... + .+..|..+..++ -.-|.+||++-.|+.++.
T Consensus 129 ~~-~~~s~e~~~~pim~~f~Ei-----------EtciecSA~~~~n~~e~f 167 (625)
T KOG1707|consen 129 DN-ENNSDEVNTLPIMIAFAEI-----------ETCIECSALTLANVSELF 167 (625)
T ss_pred cc-cccchhHHHHHHHHHhHHH-----------HHHHhhhhhhhhhhHhhh
Confidence 22 222 1 122222222211 124567888877776653
No 360
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.33 E-value=1.1e-05 Score=74.18 Aligned_cols=143 Identities=20% Similarity=0.250 Sum_probs=84.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhccc-EEeeeeEEEEeCC-
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGK-TVEVGRAHFETET- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~-T~~~~~~~~~~~~- 142 (496)
..||.++|..+.|||||+|.|.. ....+ ++ .+...+++.+.+ .+......++.++
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~-s~v~~-------------~s---------~~~~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFK-SHVSD-------------SS---------SSDNSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHH-HHHhh-------------cc---------CCCcccCcccceEEEEeeeeeeeecce
Confidence 48999999999999999999841 11100 00 001122333332 2344444556565
Q ss_pred -eEEEEEeCCCCccc---------------------HhHHhhcc-------ccCCEEEEEEeCCCCccccccCCCCchHH
Q 010985 143 -TRFTILDAPGHKSY---------------------VPNMISGA-------SQADIGVLVISARKGEFETGFEKGGQTRE 193 (496)
Q Consensus 143 -~~i~liDtpG~~~~---------------------~~~~~~~~-------~~aD~~ilVvda~~g~~e~~~~~~~~t~e 193 (496)
.++++|||||.-|+ ++.-+... ....++++.|.++-.. +.+...+
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs------LrplDie 176 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS------LRPLDIE 176 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc------cCcccHH
Confidence 45789999995443 33333322 1356788888876432 3355566
Q ss_pred HHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCC
Q 010985 194 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 242 (496)
Q Consensus 194 ~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 242 (496)
.+..+.. +-.+|-||-|.|... -+...+.++.++.-|...+++
T Consensus 177 flkrLt~--vvNvvPVIakaDtlT----leEr~~FkqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 177 FLKRLTE--VVNVVPVIAKADTLT----LEERSAFKQRIRKELEKHGID 219 (336)
T ss_pred HHHHHhh--hheeeeeEeeccccc----HHHHHHHHHHHHHHHHhcCcc
Confidence 5544433 333778999999733 334456667777777776654
No 361
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.31 E-value=1e-06 Score=86.67 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=42.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++++++|.||+|||||+|+|+..... .....+|+|++..... .
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~--~- 164 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIA------------------------------KTGNRPGVTKAQQWIK--L- 164 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCcc------------------------------ccCCCCCeEEEEEEEE--e-
Confidence 345689999999999999999999632211 1122488998875433 3
Q ss_pred CeEEEEEeCCCCc
Q 010985 142 TTRFTILDAPGHK 154 (496)
Q Consensus 142 ~~~i~liDtpG~~ 154 (496)
+..+.|+||||..
T Consensus 165 ~~~~~l~DtPGi~ 177 (287)
T PRK09563 165 GKGLELLDTPGIL 177 (287)
T ss_pred CCcEEEEECCCcC
Confidence 3468899999963
No 362
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.29 E-value=6.2e-06 Score=64.75 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=54.7
Q ss_pred CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceeeEEe
Q 010985 306 MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 374 (496)
Q Consensus 306 ~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 374 (496)
.|.++++||++|+|++||.|++...+...+|..|... ..+++++.|||+++ +.++ . ++.||+|+
T Consensus 13 ~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~--i~g~--~-~~~Gdtl~ 80 (81)
T cd04091 13 FGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA--IFGI--D-CASGDTFT 80 (81)
T ss_pred CCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE--EECC--C-cccCCEec
Confidence 4999999999999999999999888778888888654 46889999999999 4554 3 78999986
No 363
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.26 E-value=8.2e-07 Score=88.54 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=45.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..+...++.++|-||+|||||+|+|+.+..+.+ .+.+|+|.........
T Consensus 128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~------------------------------s~~PG~Tk~~q~i~~~- 176 (322)
T COG1161 128 LLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKT------------------------------SNRPGTTKGIQWIKLD- 176 (322)
T ss_pred CCccceEEEEEcCCCCcHHHHHHHHhcccceee------------------------------CCCCceecceEEEEcC-
Confidence 345568899999999999999999975544322 2348999887766654
Q ss_pred CCeEEEEEeCCCC
Q 010985 141 ETTRFTILDAPGH 153 (496)
Q Consensus 141 ~~~~i~liDtpG~ 153 (496)
..+.|+||||.
T Consensus 177 --~~i~LlDtPGi 187 (322)
T COG1161 177 --DGIYLLDTPGI 187 (322)
T ss_pred --CCeEEecCCCc
Confidence 33899999993
No 364
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.25 E-value=4.7e-06 Score=65.98 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=55.1
Q ss_pred cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceeeEEec
Q 010985 305 DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 375 (496)
Q Consensus 305 ~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 375 (496)
..|.++++||++|+|+.||.|+....+...+|..|... +.++++|.|||++++ .++ .+++.||+|++
T Consensus 14 ~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v--~gl--~~~~~Gdtl~~ 84 (85)
T cd03689 14 HRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGL--VNP--GNFQIGDTLTE 84 (85)
T ss_pred CCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEE--ECC--CCccccCEeeC
Confidence 47999999999999999999988776666778787654 468899999999995 554 44889999974
No 365
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.24 E-value=1.5e-06 Score=85.07 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=41.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++++++|.||+|||||+|+|+..... .....+|+|+......+ +
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~--~- 162 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVA------------------------------KVGNRPGVTKGQQWIKL--S- 162 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcc------------------------------ccCCCCCeecceEEEEe--C-
Confidence 45689999999999999999999632111 11224788887654433 2
Q ss_pred eEEEEEeCCCC
Q 010985 143 TRFTILDAPGH 153 (496)
Q Consensus 143 ~~i~liDtpG~ 153 (496)
..+.|+||||.
T Consensus 163 ~~~~l~DtPG~ 173 (276)
T TIGR03596 163 DGLELLDTPGI 173 (276)
T ss_pred CCEEEEECCCc
Confidence 36899999996
No 366
>PRK14974 cell division protein FtsY; Provisional
Probab=98.23 E-value=9.9e-06 Score=80.84 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=55.0
Q ss_pred CCeEEEEEeCCCCccc----HhHHhh--ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH-HHcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~~~--~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~-~~~~~~~~ivviNK~ 213 (496)
.++.+.||||||.... +..+.. ....+|..+||+||..| ....+.+... ...++. -+++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g---------~d~~~~a~~f~~~~~~~--giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG---------NDAVEQAREFNEAVGID--GVILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc---------hhHHHHHHHHHhcCCCC--EEEEeee
Confidence 4567999999996543 222211 12368999999999876 2233333332 245666 3689999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 214 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 214 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
|.. .... .+.+.. ... ..|+..++ +|++++.+
T Consensus 290 D~~-~~~G-----~~ls~~----~~~------~~Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 290 DAD-AKGG-----AALSIA----YVI------GKPILFLG--VGQGYDDL 321 (336)
T ss_pred cCC-CCcc-----HHHHHH----HHH------CcCEEEEe--CCCChhhc
Confidence 973 2111 111111 111 35677776 69998775
No 367
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.23 E-value=7.3e-06 Score=74.58 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=89.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-C
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-T 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~ 142 (496)
..++++++|...+|||.|+-.. .++.+. ++..+-+. |.-...+..+ +
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~--t~~~fp-----------------------------~~yvPTVF-dnys~~v~V~dg 50 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISY--TTNAFP-----------------------------EEYVPTVF-DNYSANVTVDDG 50 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEe--ccCcCc-----------------------------ccccCeEE-ccceEEEEecCC
Confidence 4589999999999999998433 344332 22222111 2222223332 4
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEeeccCCCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~~~~~~ivviNK~D~~~~~ 219 (496)
..+.|+||+|+++|=+-.--....+|+.|++.+......-..+ ..+..-.+... -++| +|+|.+|.||. .
T Consensus 51 ~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv----~~kW~pEi~~~cp~vp-iiLVGtk~DLr-~- 123 (198)
T KOG0393|consen 51 KPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENV----KSKWIPEIKHHCPNVP-IILVGTKADLR-D- 123 (198)
T ss_pred CEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHH----HhhhhHHHHhhCCCCC-EEEEeehHHhh-h-
Confidence 4578999999999955222355689999998887664221000 11111112222 2577 99999999994 1
Q ss_pred ccHHHHHHHH---------HHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 220 WSKERYDEIE---------SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 220 ~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+....+.+. ++-..+.+.+|. ..++.+||++..|+.+.
T Consensus 124 -d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga-----~~y~EcSa~tq~~v~~v 170 (198)
T KOG0393|consen 124 -DPSTLEKLQRQGLEPVTYEQGLELAKEIGA-----VKYLECSALTQKGVKEV 170 (198)
T ss_pred -CHHHHHHHHhccCCcccHHHHHHHHHHhCc-----ceeeeehhhhhCCcHHH
Confidence 111221211 223334444542 46899999999998775
No 368
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.21 E-value=5.7e-06 Score=73.80 Aligned_cols=84 Identities=15% Similarity=0.042 Sum_probs=53.3
Q ss_pred HhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHH
Q 010985 160 MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLK 237 (496)
Q Consensus 160 ~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~ 237 (496)
.++++..+|++++|+|+..+.. .........+... +.| +|+|+||+|+. +++........ +.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~-------~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~----~~~~~~~~~~~----~~ 65 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMG-------TRCKHVEEYLKKEKPHKH-LIFVLNKCDLV----PTWVTARWVKI----LS 65 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcc-------ccCHHHHHHHHhccCCCC-EEEEEEchhcC----CHHHHHHHHHH----Hh
Confidence 4567889999999999988632 2344444454443 366 78999999993 22222222222 22
Q ss_pred hcCCCccCCeeEEeecccccccccccc
Q 010985 238 ASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 238 ~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+. + ...++++||+++.|++++.
T Consensus 66 ~~-~----~~~~~~iSa~~~~~~~~L~ 87 (157)
T cd01858 66 KE-Y----PTIAFHASINNPFGKGSLI 87 (157)
T ss_pred cC-C----cEEEEEeeccccccHHHHH
Confidence 11 1 1236899999999998753
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.18 E-value=1.7e-06 Score=75.72 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=37.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+++++|.+|+|||||+|+|+..... ......|.|++.... ..++ .+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~------------------------------~~~~~~~~~~~~~~~--~~~~-~~~ 131 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV------------------------------SVSATPGKTKHFQTI--FLTP-TIT 131 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce------------------------------eeCCCCCcccceEEE--EeCC-CEE
Confidence 8999999999999999999632110 111135666665433 3333 689
Q ss_pred EEeCCCC
Q 010985 147 ILDAPGH 153 (496)
Q Consensus 147 liDtpG~ 153 (496)
|+||||.
T Consensus 132 i~DtpG~ 138 (141)
T cd01857 132 LCDCPGL 138 (141)
T ss_pred EEECCCc
Confidence 9999996
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.17 E-value=1.4e-05 Score=79.54 Aligned_cols=95 Identities=14% Similarity=0.201 Sum_probs=55.0
Q ss_pred CCeEEEEEeCCCCccc-------HhHHhhcc-----ccCCEEEEEEeCCCCccccccCCCCchHHHHHH-HHHcCCceEE
Q 010985 141 ETTRFTILDAPGHKSY-------VPNMISGA-----SQADIGVLVISARKGEFETGFEKGGQTREHVML-AKTLGVTKLL 207 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~-------~~~~~~~~-----~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~-~~~~~~~~~i 207 (496)
.++.+.||||||...+ ++.+.+.+ ..++..+||+||+.+. ........ ....++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 5688999999996543 22222221 3578899999999762 22222222 2234444 4
Q ss_pred EEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 208 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 208 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+++||+|.. .... .+.+ .+... ..|+..++ +|++++.+.
T Consensus 264 iIlTKlD~t-~~~G-----~~l~----~~~~~------~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 264 IILTKLDGT-AKGG-----VVFA----IADEL------GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EEEECCCCC-CCcc-----HHHH----HHHHH------CCCEEEEe--CCCChhhCc
Confidence 699999963 2211 1222 12222 35777777 788887653
No 371
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.17 E-value=2.8e-06 Score=77.01 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=41.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++++++|.+|+|||||+|+|+..... .....+|+|++.....+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~--- 159 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA------------------------------KVGNKPGVTKGIQWIKIS--- 159 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCEEeeeEEEEec---
Confidence 34579999999999999999999632110 112236788887665553
Q ss_pred eEEEEEeCCCC
Q 010985 143 TRFTILDAPGH 153 (496)
Q Consensus 143 ~~i~liDtpG~ 153 (496)
..+.++||||.
T Consensus 160 ~~~~~iDtpG~ 170 (171)
T cd01856 160 PGIYLLDTPGI 170 (171)
T ss_pred CCEEEEECCCC
Confidence 56899999995
No 372
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.16 E-value=3.1e-06 Score=78.70 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=61.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
++.++|-|..|||||+..|...-..+. .--++|.-.......+++-++.
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~va-------------------------------syefttl~~vpG~~~y~gaKiq 109 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVA-------------------------------AYEFTTLTTVPGVIRYKGAKIQ 109 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccc-------------------------------cccceeEEEecceEecccccee
Confidence 899999999999999988842211111 1134666666666778899999
Q ss_pred EEeCCCCccc-------HhHHhhccccCCEEEEEEeCCCCc
Q 010985 147 ILDAPGHKSY-------VPNMISGASQADIGVLVISARKGE 180 (496)
Q Consensus 147 liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g~ 180 (496)
+.|.||..+- -++.+.-++.|+.+++|+|...+.
T Consensus 110 lldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 110 LLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred eecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcc
Confidence 9999996433 456677788999999999998764
No 373
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.15 E-value=8.2e-06 Score=72.61 Aligned_cols=79 Identities=24% Similarity=0.287 Sum_probs=51.2
Q ss_pred cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCc
Q 010985 164 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 243 (496)
Q Consensus 164 ~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 243 (496)
+..+|++|+|+|+..+.. .+..+....+...+.| +++|+||+|+.. .+..... ..+.+..
T Consensus 10 ~~~aD~vl~V~D~~~~~~-------~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~----~~~~~~~----~~~~~~~---- 69 (156)
T cd01859 10 IKESDVVLEVLDARDPEL-------TRSRKLERYVLELGKK-LLIVLNKADLVP----KEVLEKW----KSIKESE---- 69 (156)
T ss_pred HhhCCEEEEEeeCCCCcc-------cCCHHHHHHHHhCCCc-EEEEEEhHHhCC----HHHHHHH----HHHHHhC----
Confidence 456999999999987643 2344444445556777 889999999831 2222111 1122222
Q ss_pred cCCeeEEeecccccccccccc
Q 010985 244 KKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 244 ~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..+++++||++|.|++++.
T Consensus 70 --~~~~~~iSa~~~~gi~~L~ 88 (156)
T cd01859 70 --GIPVVYVSAKERLGTKILR 88 (156)
T ss_pred --CCcEEEEEccccccHHHHH
Confidence 2468999999999998853
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.13 E-value=6.4e-05 Score=73.21 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCCCcccHhH-------Hhhcc-----ccCCEEEEEEeCCCCccccccCCCCchHHHHH-HHHHcCCceEE
Q 010985 141 ETTRFTILDAPGHKSYVPN-------MISGA-----SQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTLGVTKLL 207 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~-------~~~~~-----~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~-~~~~~~~~~~i 207 (496)
.++.+.||||||....-.. ..+.+ ..+|..+||+|+..+ ........ .....++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---------~~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---------QNALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---------HHHHHHHHHHHhhCCCC--E
Confidence 5688999999997543222 11222 248999999999865 22333332 23345554 4
Q ss_pred EEEeeccC
Q 010985 208 LVVNKMDD 215 (496)
Q Consensus 208 vviNK~D~ 215 (496)
+++||+|.
T Consensus 222 ~IlTKlDe 229 (272)
T TIGR00064 222 IILTKLDG 229 (272)
T ss_pred EEEEccCC
Confidence 68999997
No 375
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.12 E-value=1.4e-05 Score=69.84 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=54.4
Q ss_pred hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHH
Q 010985 158 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF 235 (496)
Q Consensus 158 ~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~ 235 (496)
+.....+..+|++++|+|+..+.. .+..+....+... +.| +++|+||+|+. .++... .....
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~-------~~~~~l~~~l~~~~~~k~-~iivlNK~DL~----~~~~~~----~~~~~ 66 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLL-------FRPPDLERYVKEVDPRKK-NILLLNKADLL----TEEQRK----AWAEY 66 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcc-------cCCHHHHHHHHhccCCCc-EEEEEechhcC----CHHHHH----HHHHH
Confidence 456677899999999999988743 3444555555555 667 88999999983 222222 23334
Q ss_pred HHhcCCCccCCeeEEeeccccccc
Q 010985 236 LKASGYNVKKDVQFLPISGLMGLN 259 (496)
Q Consensus 236 l~~~~~~~~~~~~~ipiSa~~g~g 259 (496)
++..+ .+++++||++|.+
T Consensus 67 ~~~~~------~~ii~iSa~~~~~ 84 (141)
T cd01857 67 FKKEG------IVVVFFSALKENA 84 (141)
T ss_pred HHhcC------CeEEEEEecCCCc
Confidence 44433 3689999999987
No 376
>PRK12288 GTPase RsgA; Reviewed
Probab=98.10 E-value=3.1e-06 Score=85.05 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=39.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
.++++|.+|+|||||+|+|+........ .+.. ...+-+-+|+......+..++ .
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~---------------------~is~--~~~rGrHTT~~~~l~~l~~~~---~ 260 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVG---------------------DVSD--NSGLGQHTTTAARLYHFPHGG---D 260 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeec---------------------cccC--cCCCCcCceeeEEEEEecCCC---E
Confidence 4799999999999999999743221110 0000 111223466666555553333 4
Q ss_pred EEeCCCCccc
Q 010985 147 ILDAPGHKSY 156 (496)
Q Consensus 147 liDtpG~~~~ 156 (496)
|+||||.+.|
T Consensus 261 liDTPGir~~ 270 (347)
T PRK12288 261 LIDSPGVREF 270 (347)
T ss_pred EEECCCCCcc
Confidence 9999998876
No 377
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.10 E-value=1.9e-05 Score=80.98 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=40.6
Q ss_pred CCeEEEEEeCCCCccc----HhHHhh--ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~~~--~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviNK~ 213 (496)
.++.+.||||||.... +..+.. .+..+|-++||+||..|- .....+.... ..++. -+++||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---------~a~~~a~~F~~~~~~~--g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---------AAEAQAKAFKDSVDVG--SVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---------hHHHHHHHHHhccCCc--EEEEECc
Confidence 3688999999995543 333322 234689999999998761 2233333332 23444 4689999
Q ss_pred cC
Q 010985 214 DD 215 (496)
Q Consensus 214 D~ 215 (496)
|-
T Consensus 250 D~ 251 (429)
T TIGR01425 250 DG 251 (429)
T ss_pred cC
Confidence 97
No 378
>PRK12289 GTPase RsgA; Reviewed
Probab=98.09 E-value=3e-06 Score=85.17 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 010985 67 NVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
.++++|++|+|||||+|+|+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 4899999999999999999743
No 379
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.07 E-value=8.5e-06 Score=81.73 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=54.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC-CcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC---
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSG-QVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--- 141 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g-~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--- 141 (496)
++++|+|.||+|||||+|+|..... ...+ | +-+|++.....+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~-------------------y------------pftTi~p~~g~v~v~d~r 51 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAAN-------------------P------------PFTTIEPNAGVVNPSDPR 51 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCC-------------------C------------CCCCCCCceeEEEechhH
Confidence 7899999999999999999953322 1110 0 223333332222221
Q ss_pred --------------CeEEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCC
Q 010985 142 --------------TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 178 (496)
Q Consensus 142 --------------~~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 178 (496)
...+.++|.||... .-...+..++.+|++++||++..
T Consensus 52 ~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 52 LDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred HHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 24688999999543 34456677899999999999864
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.07 E-value=3.8e-06 Score=85.41 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=42.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..++.++|.+|+|||||+|+|+..... .. +.....+.+|+|++.....+.. .
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~-----------------~~--------~~~~~s~~pGTT~~~~~~~l~~---~ 211 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITG-----------------EK--------DVITTSRFPGTTLDKIEIPLDD---G 211 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccC-----------------cc--------ceEEecCCCCccceeEEEEcCC---C
Confidence 458999999999999999999743210 00 0001234599999987655532 2
Q ss_pred EEEEeCCCCc
Q 010985 145 FTILDAPGHK 154 (496)
Q Consensus 145 i~liDtpG~~ 154 (496)
..++||||..
T Consensus 212 ~~l~DTPGi~ 221 (365)
T PRK13796 212 SFLYDTPGII 221 (365)
T ss_pred cEEEECCCcc
Confidence 4799999963
No 381
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.05 E-value=2.7e-06 Score=75.35 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
..++++|+.|+|||||+|+|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999743
No 382
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.04 E-value=2.1e-05 Score=72.48 Aligned_cols=94 Identities=14% Similarity=0.006 Sum_probs=54.1
Q ss_pred cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHH
Q 010985 156 YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF 235 (496)
Q Consensus 156 ~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~ 235 (496)
|.......+..+|++++|+|+..... ...+.+ .....+.| +++|+||+|+.......+..+..... ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l-~~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~--~~ 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL-RLFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRA--KA 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC--------ccchhH-HHhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHH--HH
Confidence 45555666789999999999987531 111222 12224566 88999999984322111112111100 11
Q ss_pred HHhcCCCccCCeeEEeecccccccccccc
Q 010985 236 LKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 236 l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+..++. ..+++++||++|.|++++.
T Consensus 92 ~~~~~~~---~~~i~~vSA~~~~gi~eL~ 117 (190)
T cd01855 92 AAGLGLK---PKDVILISAKKGWGVEELI 117 (190)
T ss_pred HhhcCCC---cccEEEEECCCCCCHHHHH
Confidence 1222321 1258999999999999853
No 383
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=7.8e-05 Score=73.96 Aligned_cols=141 Identities=19% Similarity=0.311 Sum_probs=83.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.+++-++|..|.|||||+|.|..+ ....++. ............++......++-+|
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~-~l~~~~~---------------------~~~~~~~~~~t~~i~~~~~~iee~g~~ 78 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLT-DLSGNRE---------------------VPGASERIKETVEIESTKVEIEENGVK 78 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhh-hccCCcc---------------------cCCcccCccccceeeeeeeeecCCCeE
Confidence 488999999999999999999644 1111100 0001111122334444444455455
Q ss_pred eEEEEEeCCCCcccHhH-------------H----h--------hccc--cCCEEEEEEeCCCCccccccCCCCchHHHH
Q 010985 143 TRFTILDAPGHKSYVPN-------------M----I--------SGAS--QADIGVLVISARKGEFETGFEKGGQTREHV 195 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~-------------~----~--------~~~~--~aD~~ilVvda~~g~~e~~~~~~~~t~e~~ 195 (496)
..++++||||.-|++.+ . + +... ..+++|+.|.+... +...-.+
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh---------gL~p~Di 149 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH---------GLKPLDI 149 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC---------CCcHhhH
Confidence 45788999996555111 0 0 1122 56889999987643 1222233
Q ss_pred HHHHHc--CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCC
Q 010985 196 MLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 241 (496)
Q Consensus 196 ~~~~~~--~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~ 241 (496)
..++.+ .+. +|-||-|.|. +..+.....+..+...+...++
T Consensus 150 ~~Mk~l~~~vN-iIPVI~KaD~----lT~~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 150 EFMKKLSKKVN-LIPVIAKADT----LTKDELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred HHHHHHhcccc-ccceeecccc----CCHHHHHHHHHHHHHHHHHcCc
Confidence 333333 355 7889999998 3556777788888887776543
No 384
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.03 E-value=6.4e-06 Score=83.63 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=42.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..+++++|.+|+|||||+|+|+........ .......+|+|++.....+ +..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~-------------------------~~~~s~~pgtT~~~~~~~~---~~~ 205 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKD-------------------------VITTSPFPGTTLDLIEIPL---DDG 205 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcc-------------------------eeeecCCCCeEeeEEEEEe---CCC
Confidence 469999999999999999999754321000 0012234899998765543 234
Q ss_pred EEEEeCCCCc
Q 010985 145 FTILDAPGHK 154 (496)
Q Consensus 145 i~liDtpG~~ 154 (496)
+.++||||..
T Consensus 206 ~~l~DtPG~~ 215 (360)
T TIGR03597 206 HSLYDTPGII 215 (360)
T ss_pred CEEEECCCCC
Confidence 6799999964
No 385
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.02 E-value=1e-05 Score=73.21 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=58.3
Q ss_pred CCCCc-ccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHH
Q 010985 150 APGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 228 (496)
Q Consensus 150 tpG~~-~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i 228 (496)
-|||- +.+.++...+..||++++|+|+..+.. ....+.+..+ .+.| .|+|+||+|+.. ++...+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~-------~~~~~i~~~~--~~k~-~ilVlNK~Dl~~----~~~~~~- 66 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLS-------SRNPLLEKIL--GNKP-RIIVLNKADLAD----PKKTKK- 66 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccC-------cCChhhHhHh--cCCC-EEEEEehhhcCC----hHHHHH-
Confidence 36764 457778888999999999999987632 1222222221 2556 789999999831 221111
Q ss_pred HHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 229 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 229 ~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
..++++.. ..+++++||+++.|++++..
T Consensus 67 ---~~~~~~~~------~~~vi~iSa~~~~gi~~L~~ 94 (171)
T cd01856 67 ---WLKYFESK------GEKVLFVNAKSGKGVKKLLK 94 (171)
T ss_pred ---HHHHHHhc------CCeEEEEECCCcccHHHHHH
Confidence 11223322 13579999999999998543
No 386
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.02 E-value=6.1e-06 Score=79.19 Aligned_cols=64 Identities=27% Similarity=0.206 Sum_probs=40.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
..++++|++|+|||||+|+|+.....-. |. +.. ...+-+.+|++.....+ .+ -
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t--------------~~-------i~~--~~~~G~hTT~~~~l~~l--~~--~ 173 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQV--------------ND-------ISS--KLGLGKHTTTHVELFHF--HG--G 173 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccc--------------cc-------eec--cCCCCCCcCCceEEEEc--CC--c
Confidence 4789999999999999999974322110 00 000 11223557877766655 22 3
Q ss_pred EEEeCCCCccc
Q 010985 146 TILDAPGHKSY 156 (496)
Q Consensus 146 ~liDtpG~~~~ 156 (496)
.|+||||.+.+
T Consensus 174 ~liDtPG~~~~ 184 (245)
T TIGR00157 174 LIADTPGFNEF 184 (245)
T ss_pred EEEeCCCcccc
Confidence 79999997765
No 387
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=2.8e-05 Score=75.88 Aligned_cols=133 Identities=21% Similarity=0.196 Sum_probs=87.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcC--ccchhhhhhcCCchhhhhcccEEeeeeE-EE--
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKS--RESWYMAYIMDTNEEERIKGKTVEVGRA-HF-- 138 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g--~~s~~~~~~~d~~~~e~~~G~T~~~~~~-~~-- 138 (496)
..+-|.++|.-..||||+++.|+...= .. ...| .+.-.+..+|-...++..+|.+.-+... .|
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dy--pg----------~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~g 124 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDY--PG----------LRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRG 124 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCC--Cc----------cccCCCCCcceeEEEEecCcccccCCceeeecCCCchhh
Confidence 346789999999999999999973221 00 0112 2333455667777777788887765421 11
Q ss_pred ---------------EeC---CeEEEEEeCCCCcccHhH-----------HhhccccCCEEEEEEeCCCCccccccCCCC
Q 010985 139 ---------------ETE---TTRFTILDAPGHKSYVPN-----------MISGASQADIGVLVISARKGEFETGFEKGG 189 (496)
Q Consensus 139 ---------------~~~---~~~i~liDtpG~~~~~~~-----------~~~~~~~aD~~ilVvda~~g~~e~~~~~~~ 189 (496)
... -..++++||||.-.--++ ..--+..+|.++|+.|+..-. +..
T Consensus 125 L~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD------Isd 198 (532)
T KOG1954|consen 125 LNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD------ISD 198 (532)
T ss_pred hhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc------ccH
Confidence 111 145899999995333222 222356899999999998743 346
Q ss_pred chHHHHHHHHHcCCceEEEEEeeccC
Q 010985 190 QTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 190 ~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
.+++.+..++...-+ +=||+||.|.
T Consensus 199 Ef~~vi~aLkG~Edk-iRVVLNKADq 223 (532)
T KOG1954|consen 199 EFKRVIDALKGHEDK-IRVVLNKADQ 223 (532)
T ss_pred HHHHHHHHhhCCcce-eEEEeccccc
Confidence 777777777765544 7789999998
No 388
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.98 E-value=7.9e-06 Score=75.57 Aligned_cols=65 Identities=18% Similarity=0.380 Sum_probs=41.6
Q ss_pred CCeEEEEEeCCCCcccH----hH---HhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSYV----PN---MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~----~~---~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~ 213 (496)
+++.+.||||||...+- .. .... ...+-++||+||+.+. .............++.. +++||+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~-~~~~~~~LVlsa~~~~--------~~~~~~~~~~~~~~~~~--lIlTKl 150 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEA-LNPDEVHLVLSATMGQ--------EDLEQALAFYEAFGIDG--LILTKL 150 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHH-HSSSEEEEEEEGGGGG--------HHHHHHHHHHHHSSTCE--EEEEST
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhh-cCCccceEEEecccCh--------HHHHHHHHHhhcccCce--EEEEee
Confidence 45779999999965542 22 2222 2678999999999762 12233344445567774 469999
Q ss_pred cCC
Q 010985 214 DDH 216 (496)
Q Consensus 214 D~~ 216 (496)
|..
T Consensus 151 Det 153 (196)
T PF00448_consen 151 DET 153 (196)
T ss_dssp TSS
T ss_pred cCC
Confidence 973
No 389
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.97 E-value=8.1e-06 Score=72.00 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=38.1
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
.++.+.||||||... .....+..||.+|+|..+..+ .....+ ....+..-. ++++||+|
T Consensus 90 ~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~----------D~y~~~-k~~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAG----------DDIQAI-KAGIMEIAD-IVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCch----------hHHHHh-hhhHhhhcC-EEEEeCCC
Confidence 468899999999653 334567889999999887633 122211 122223332 57999998
No 390
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.96 E-value=4.2e-05 Score=68.03 Aligned_cols=77 Identities=26% Similarity=0.226 Sum_probs=47.6
Q ss_pred CEEEEEEeCCCCccccccCCCCchHHHH-HHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCC
Q 010985 168 DIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKD 246 (496)
Q Consensus 168 D~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~ 246 (496)
|++|+|+|+..+.. ....... ..+...+.| +|+|+||+|+. +++...+.... +.... .
T Consensus 1 Dvvl~VvD~~~p~~-------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~----~~~~~~~~~~~----~~~~~-----~ 59 (155)
T cd01849 1 DVILEVLDARDPLG-------TRSPDIERVLIKEKGKK-LILVLNKADLV----PKEVLRKWLAY----LRHSY-----P 59 (155)
T ss_pred CEEEEEEeccCCcc-------ccCHHHHHHHHhcCCCC-EEEEEechhcC----CHHHHHHHHHH----HHhhC-----C
Confidence 78999999987632 2222222 244556777 88999999983 22222222111 12211 2
Q ss_pred eeEEeeccccccccccccc
Q 010985 247 VQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 247 ~~~ipiSa~~g~gi~~l~~ 265 (496)
.+++++||++|.|++++.+
T Consensus 60 ~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 60 TIPFKISATNGQGIEKKES 78 (155)
T ss_pred ceEEEEeccCCcChhhHHH
Confidence 3689999999999988543
No 391
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.94 E-value=7.7e-05 Score=60.19 Aligned_cols=66 Identities=23% Similarity=0.426 Sum_probs=50.7
Q ss_pred cCCeEEEEEEEEeeeecCCEEEEec---------CCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceee
Q 010985 305 DMGTVVMGKVESGSVREGDSLLVMP---------NKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 371 (496)
Q Consensus 305 ~~G~v~~g~v~~G~l~~g~~v~~~p---------~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 371 (496)
..|.+.++||++|+|+.||.+.+.. ...+.+|..|... ..++++|.|||+|++ .|++ +++.|+
T Consensus 14 ~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g~~--~~~~g~ 89 (93)
T cd03700 14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI--VGLD--QLKSGT 89 (93)
T ss_pred CCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE--ECCc--cCceEe
Confidence 4688999999999999999998765 2234677787654 468899999999996 4443 367777
Q ss_pred EEe
Q 010985 372 VLS 374 (496)
Q Consensus 372 vl~ 374 (496)
+.+
T Consensus 90 ~~~ 92 (93)
T cd03700 90 TAT 92 (93)
T ss_pred Eec
Confidence 653
No 392
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=3.9e-05 Score=68.24 Aligned_cols=148 Identities=21% Similarity=0.274 Sum_probs=94.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEE--EEe
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH--FET 140 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~--~~~ 140 (496)
....+++++|..+.||+|++++.+ +|.. |...-.|..+.... |.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~l--tgeF-------------------------------e~~y~at~Gv~~~pl~f~t 54 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHL--TGEF-------------------------------EKTYPATLGVEVHPLLFDT 54 (216)
T ss_pred cceEEEEEecCCcccccchhhhhh--cccc-------------------------------eecccCcceeEEeeeeeec
Confidence 467899999999999999998874 2221 11112233322222 222
Q ss_pred --CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEeeccCCC
Q 010985 141 --ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 141 --~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-~~~~~ivviNK~D~~~ 217 (496)
+..++..+||+|.+.|....-.+.-++-+|+++.|.....+-. .-.+-|-.+++.. ++| ++++-||.|...
T Consensus 55 n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~-----n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~ 128 (216)
T KOG0096|consen 55 NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYK-----NVPRWHRDLVRVRENIP-IVLCGNKVDIKA 128 (216)
T ss_pred ccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhh-----cchHHHHHHHHHhcCCC-eeeeccceeccc
Confidence 3388999999999999776665556778899999987654311 2223343444433 478 999999999721
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.. +.. +.+.+....+...+.+||++.-|.+.+
T Consensus 129 r~--------~k~------k~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 129 RK--------VKA------KPVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred cc--------ccc------ccceeeecccceeEEeecccccccccc
Confidence 11 111 111122234678899999999998875
No 393
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.89 E-value=2.6e-05 Score=76.38 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=57.2
Q ss_pred CCCcc-cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHH
Q 010985 151 PGHKS-YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 229 (496)
Q Consensus 151 pG~~~-~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~ 229 (496)
|||-. .++++...+..||++|+|+||..+.. .........+ .+.| +|+|+||+|+. + .+......
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~-------~~~~~i~~~l--~~kp-~IiVlNK~DL~--~--~~~~~~~~ 70 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS-------SRNPMIDEIR--GNKP-RLIVLNKADLA--D--PAVTKQWL 70 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------CCChhHHHHH--CCCC-EEEEEEccccC--C--HHHHHHHH
Confidence 78753 56777778899999999999987632 1222222222 2456 88999999983 2 22122222
Q ss_pred HHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 230 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 230 ~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..++..+ .+++++|+.++.|+.++.
T Consensus 71 ----~~~~~~~------~~vi~iSa~~~~gi~~L~ 95 (276)
T TIGR03596 71 ----KYFEEKG------IKALAINAKKGKGVKKII 95 (276)
T ss_pred ----HHHHHcC------CeEEEEECCCcccHHHHH
Confidence 2222222 368999999999998854
No 394
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.89 E-value=8.5e-05 Score=76.48 Aligned_cols=87 Identities=21% Similarity=0.321 Sum_probs=58.3
Q ss_pred cccEEeeeeEEEEe-CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCC--CCchHHHHHHHHH---
Q 010985 127 KGKTVEVGRAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEK--GGQTREHVMLAKT--- 200 (496)
Q Consensus 127 ~G~T~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~--~~~t~e~~~~~~~--- 200 (496)
+..|.-+....|.. .+..+.++|+.|++.-.+.++......+++|+||+.++-.. ..++. .....+-+.+...
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq-~~~ed~~~nrl~esl~lF~~i~~ 297 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQ-TLYEDPNTNRLHESLNLFESICN 297 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGS-BESSSTTSBHHHHHHHHHHHHHT
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhh-hhcccchHHHHHHHHHHHHHHHh
Confidence 44555566777888 89999999999999999999999999999999999764211 00010 0123333444333
Q ss_pred ---c-CCceEEEEEeeccC
Q 010985 201 ---L-GVTKLLLVVNKMDD 215 (496)
Q Consensus 201 ---~-~~~~~ivviNK~D~ 215 (496)
+ +.+ +|+++||+|+
T Consensus 298 ~~~~~~~~-iil~lnK~D~ 315 (389)
T PF00503_consen 298 NPWFKNTP-IILFLNKIDL 315 (389)
T ss_dssp SGGGTTSE-EEEEEE-HHH
T ss_pred CcccccCc-eEEeeecHHH
Confidence 1 345 9999999997
No 395
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.89 E-value=7.9e-05 Score=68.97 Aligned_cols=65 Identities=22% Similarity=0.420 Sum_probs=51.3
Q ss_pred CCeEEEEEeC-CCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 141 ETTRFTILDA-PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~~~i~liDt-pG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
+.+.+.++|| +|.+.|-+.++ ..+|.+|.|+|++...+ ...++.-.+...++++++.+|+||.|-
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~~---~~vD~vivVvDpS~~sl-------~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGTI---EGVDLVIVVVDPSYKSL-------RTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred ccCcEEEEecccchhhhccccc---cCCCEEEEEeCCcHHHH-------HHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 4577899999 67777766654 46899999999987643 245556678888998889999999995
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=6e-05 Score=77.28 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=41.3
Q ss_pred eCCeEEEEEeCCCCcccHhH---Hh---hccccCCEEEEEEeCCCCccccccCCCCch-HHHHHHHHHcCCceEEEEEee
Q 010985 140 TETTRFTILDAPGHKSYVPN---MI---SGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTLGVTKLLLVVNK 212 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~---~~---~~~~~aD~~ilVvda~~g~~e~~~~~~~~t-~e~~~~~~~~~~~~~ivviNK 212 (496)
..++.+.||||+|....... .+ .......-.+||+||+.+ .+. .+.+.....+++.. +++||
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~---------~~~~~~~~~~f~~~~~~~--~I~TK 335 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS---------GDTLDEVISAYQGHGIHG--CIITK 335 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC---------HHHHHHHHHHhcCCCCCE--EEEEe
Confidence 45778999999996554222 12 222345678899999865 233 33344444567764 48999
Q ss_pred ccC
Q 010985 213 MDD 215 (496)
Q Consensus 213 ~D~ 215 (496)
+|-
T Consensus 336 lDE 338 (420)
T PRK14721 336 VDE 338 (420)
T ss_pred eeC
Confidence 997
No 397
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.89 E-value=1.3e-05 Score=81.46 Aligned_cols=64 Identities=23% Similarity=0.262 Sum_probs=45.0
Q ss_pred ccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeE
Q 010985 57 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 136 (496)
Q Consensus 57 ~~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~ 136 (496)
..+...++.++|++||.||+||||++|+|.+....-++ +-+|.|...-..
T Consensus 306 ~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS------------------------------~TPGkTKHFQTi 355 (562)
T KOG1424|consen 306 PTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVS------------------------------STPGKTKHFQTI 355 (562)
T ss_pred CCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeee------------------------------cCCCCcceeEEE
Confidence 44556666899999999999999999999643332222 227777655444
Q ss_pred EEEeCCeEEEEEeCCCC
Q 010985 137 HFETETTRFTILDAPGH 153 (496)
Q Consensus 137 ~~~~~~~~i~liDtpG~ 153 (496)
.+ .-.+.|.||||.
T Consensus 356 ~l---s~~v~LCDCPGL 369 (562)
T KOG1424|consen 356 FL---SPSVCLCDCPGL 369 (562)
T ss_pred Ec---CCCceecCCCCc
Confidence 33 345789999994
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=4.5e-05 Score=77.01 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
..++-.++++|++|+||||++..|...
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999643
No 399
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=7.3e-05 Score=75.21 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=42.5
Q ss_pred CeEEEEEeCCCCccc----HhHHhhcc--ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 142 TTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~~~i~liDtpG~~~~----~~~~~~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
++.+.||||||.... +..+...+ ..+|.++||+||+.+. ....+.+......++.. +++||+|-
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--------~d~~~i~~~F~~~~idg--lI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--------HHHHHHHHHhcCCCCCE--EEEEcccC
Confidence 468999999996432 33333322 3578899999997652 12345555555567774 47999997
Q ss_pred C
Q 010985 216 H 216 (496)
Q Consensus 216 ~ 216 (496)
.
T Consensus 390 T 390 (436)
T PRK11889 390 T 390 (436)
T ss_pred C
Confidence 3
No 400
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.83 E-value=2.5e-05 Score=75.06 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=47.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
...+.++-++|-||.|||||+|++........ .+. ....++|+|+.+....--..
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~---------k~a----------------~vG~~pGVT~~V~~~iri~~ 194 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKK---------KAA----------------RVGAEPGVTRRVSERIRISH 194 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhc---------cce----------------eccCCCCceeeehhheEecc
Confidence 45789999999999999999999853322211 000 22335999999987554455
Q ss_pred CeEEEEEeCCC
Q 010985 142 TTRFTILDAPG 152 (496)
Q Consensus 142 ~~~i~liDtpG 152 (496)
.-.+.++||||
T Consensus 195 rp~vy~iDTPG 205 (335)
T KOG2485|consen 195 RPPVYLIDTPG 205 (335)
T ss_pred CCceEEecCCC
Confidence 67799999999
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.82 E-value=0.00013 Score=66.18 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCccc----HhHHhhc--cccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHHcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~~~~--~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~~~~~~~ivviNK~ 213 (496)
.++.+.|+||||...+ +..+... ....|.+++|+|+..+. ...+.+ ......++. -+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---------~~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---------DAVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---------HHHHHHHHHHhhCCCC--EEEEECC
Confidence 4677899999997533 3332221 23589999999997541 233333 333445654 4678999
Q ss_pred cC
Q 010985 214 DD 215 (496)
Q Consensus 214 D~ 215 (496)
|.
T Consensus 150 D~ 151 (173)
T cd03115 150 DG 151 (173)
T ss_pred cC
Confidence 97
No 402
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.82 E-value=2e-05 Score=76.27 Aligned_cols=65 Identities=26% Similarity=0.243 Sum_probs=41.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
...+++|+.|+|||||+|+|+-....-. ..+.. ...|-+-||+......+..+|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t---------------------~eIS~--~~~rGkHTTt~~~l~~l~~gG--- 218 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKT---------------------GEISE--KLGRGRHTTTHVELFPLPGGG--- 218 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhh---------------------hhhcc--cCCCCCCccceEEEEEcCCCC---
Confidence 3779999999999999999963111100 00111 111234477777666665444
Q ss_pred EEEeCCCCccc
Q 010985 146 TILDAPGHKSY 156 (496)
Q Consensus 146 ~liDtpG~~~~ 156 (496)
.++||||.+.|
T Consensus 219 ~iiDTPGf~~~ 229 (301)
T COG1162 219 WIIDTPGFRSL 229 (301)
T ss_pred EEEeCCCCCcc
Confidence 38999998776
No 403
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.80 E-value=5.9e-05 Score=73.15 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=56.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 141 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-- 141 (496)
..++++|+|.||+|||||+|+|... ++ |... -+=.|+|......+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~-~a----------------~~~N--------------fPF~TIdPn~a~V~v~d~ 67 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKS-KA----------------GAAN--------------FPFCTIDPNEARVEVPDS 67 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcC-CC----------------CccC--------------CCcceeccccceeecCch
Confidence 5689999999999999999999521 11 1001 1224555544433221
Q ss_pred ---------------CeEEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCC
Q 010985 142 ---------------TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 178 (496)
Q Consensus 142 ---------------~~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 178 (496)
...+++.|++|.-. .-...++-++.+|+++.||++..
T Consensus 68 Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 68 RFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 24589999999432 24455667889999999999865
No 404
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.77 E-value=5.4e-05 Score=72.66 Aligned_cols=83 Identities=22% Similarity=0.215 Sum_probs=53.2
Q ss_pred ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCC
Q 010985 163 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 242 (496)
Q Consensus 163 ~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 242 (496)
.++.+|.+++|+|+..+.+. + ....+.+..+...++| +++|+||+||... . . ...+....++..|
T Consensus 33 ~~~n~D~viiV~d~~~p~~s--~---~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~---~-~---~~~~~~~~~~~~g-- 97 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELS--L---NQLDRFLVVAEAQNIE-PIIVLNKIDLLDD---E-D---MEKEQLDIYRNIG-- 97 (245)
T ss_pred ccccCCEEEEEEECCCCCCC--H---HHHHHHHHHHHHCCCC-EEEEEECcccCCC---H-H---HHHHHHHHHHHCC--
Confidence 57899999999999876420 1 1233334445556788 7899999999321 1 1 1112222333443
Q ss_pred ccCCeeEEeecccccccccccc
Q 010985 243 VKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 243 ~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+++.+||++|.|++++.
T Consensus 98 ----~~v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 98 ----YQVLMTSSKNQDGLKELI 115 (245)
T ss_pred ----CeEEEEecCCchhHHHHH
Confidence 468999999999998854
No 405
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.76 E-value=3.2e-05 Score=68.78 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
...+++++|.+|+|||||+|+|.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 35788999999999999999995
No 406
>PRK12289 GTPase RsgA; Reviewed
Probab=97.76 E-value=8.5e-05 Score=74.81 Aligned_cols=82 Identities=23% Similarity=0.281 Sum_probs=54.4
Q ss_pred cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCc
Q 010985 164 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 243 (496)
Q Consensus 164 ~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 243 (496)
++++|.+++|+|+..+.+. ..+..+.+..+...++| +|+|+||+|+. + .+..+ .....++..|+
T Consensus 87 ~aNvD~vLlV~d~~~p~~~-----~~~LdR~L~~a~~~~ip-~ILVlNK~DLv--~--~~~~~----~~~~~~~~~g~-- 150 (352)
T PRK12289 87 VANADQILLVFALAEPPLD-----PWQLSRFLVKAESTGLE-IVLCLNKADLV--S--PTEQQ----QWQDRLQQWGY-- 150 (352)
T ss_pred hhcCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEchhcC--C--hHHHH----HHHHHHHhcCC--
Confidence 6789999999999865421 01224444555566888 78999999993 2 22222 22233444443
Q ss_pred cCCeeEEeeccccccccccccc
Q 010985 244 KKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 244 ~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+++++||++|.|++++.+
T Consensus 151 ----~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 151 ----QPLFISVETGIGLEALLE 168 (352)
T ss_pred ----eEEEEEcCCCCCHHHHhh
Confidence 589999999999988643
No 407
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.74 E-value=0.00039 Score=67.03 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=46.7
Q ss_pred HHcCCceEEEEEeeccCC-----CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccc
Q 010985 199 KTLGVTKLLLVVNKMDDH-----TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 262 (496)
Q Consensus 199 ~~~~~~~~ivviNK~D~~-----~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~ 262 (496)
..+|++ ++||++|+|.. ..+|..+.|+-|...++.++-++|- ..|.+|++...|++-
T Consensus 219 ~NlGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga------aLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 219 HNLGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA------ALIYTSVKETKNIDL 280 (473)
T ss_pred hcCCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc------eeEEeecccccchHH
Confidence 346788 89999999973 3457778899999999999988874 478999999999985
No 408
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00024 Score=72.39 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCCccc----HhHHhhccc--cCC-EEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSY----VPNMISGAS--QAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~~~~~~--~aD-~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~ 213 (496)
.++.+.||||||.... +..+...+. .++ -.+||+||+.+. ....+.+.....+++.. +++||+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--------~~~~~~~~~~~~~~~~~--~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--------SDVKEIFHQFSPFSYKT--VIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEec
Confidence 5788999999995432 223322222 223 689999999873 23344444444466664 489999
Q ss_pred cC
Q 010985 214 DD 215 (496)
Q Consensus 214 D~ 215 (496)
|-
T Consensus 323 De 324 (388)
T PRK12723 323 DE 324 (388)
T ss_pred cC
Confidence 97
No 409
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.73 E-value=3.9e-05 Score=75.50 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=40.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
..++++|++|+|||||+|+|+.....- .|. +.. ...+.+++|++.....+... .
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~--------------~g~-------v~~--~~~~g~~tT~~~~~~~~~~~---~ 215 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLA--------------TGE-------ISE--KLGRGRHTTTHRELFPLPGG---G 215 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcc--------------ccc-------eec--cCCCCCcccceEEEEEcCCC---C
Confidence 579999999999999999997432210 010 000 11122457776654444322 3
Q ss_pred EEEeCCCCccc
Q 010985 146 TILDAPGHKSY 156 (496)
Q Consensus 146 ~liDtpG~~~~ 156 (496)
.++||||.++|
T Consensus 216 ~liDtPG~~~~ 226 (287)
T cd01854 216 LLIDTPGFREF 226 (287)
T ss_pred EEEECCCCCcc
Confidence 69999998775
No 410
>PRK00098 GTPase RsgA; Reviewed
Probab=97.70 E-value=0.00012 Score=72.56 Aligned_cols=82 Identities=24% Similarity=0.374 Sum_probs=53.2
Q ss_pred cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCc
Q 010985 164 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 243 (496)
Q Consensus 164 ~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 243 (496)
++.+|.+++|+|+..+.+. .....+.+..+...++| +++|+||+|+. + ..+... .....++..+
T Consensus 78 aaniD~vllV~d~~~p~~~-----~~~idr~L~~~~~~~ip-~iIVlNK~DL~--~-~~~~~~----~~~~~~~~~g--- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS-----TDLLDRFLVLAEANGIK-PIIVLNKIDLL--D-DLEEAR----ELLALYRAIG--- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEhHHcC--C-CHHHHH----HHHHHHHHCC---
Confidence 6899999999999765321 01123344445667888 78999999993 1 122222 2223344443
Q ss_pred cCCeeEEeecccccccccccc
Q 010985 244 KKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 244 ~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+++++||++|.|++++.
T Consensus 142 ---~~v~~vSA~~g~gi~~L~ 159 (298)
T PRK00098 142 ---YDVLELSAKEGEGLDELK 159 (298)
T ss_pred ---CeEEEEeCCCCccHHHHH
Confidence 468999999999998754
No 411
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.70 E-value=0.00047 Score=71.85 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=45.0
Q ss_pred cCCceEEEEEeeccCC-----CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 201 LGVTKLLLVVNKMDDH-----TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 201 ~~~~~~ivviNK~D~~-----~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+|+| ++||++|.|.. ..+|.++.|+-|.+.|+.++-.+|. ..|.+|.+...|++.|
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA------sL~yts~~~~~n~~~L 255 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA------SLIYTSVKEEKNLDLL 255 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC------eEEEeeccccccHHHH
Confidence 4678 99999999963 2357788899999999999888874 4788999888888753
No 412
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.70 E-value=0.00034 Score=56.53 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=43.1
Q ss_pred CeEEEEEEEEeeeecCCEEEEecCC---------ceEEEEEEEEc----CccccccCCCCeEEEEeccCCc
Q 010985 307 GTVVMGKVESGSVREGDSLLVMPNK---------AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEE 364 (496)
Q Consensus 307 G~v~~g~v~~G~l~~g~~v~~~p~~---------~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~ 364 (496)
|.+.++||++|+|+.||.|++...+ ...+|..|... ..++++|.|||+|++ .|++.
T Consensus 16 ~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v--~gl~~ 84 (94)
T cd04090 16 SFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI--KGIDS 84 (94)
T ss_pred EEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE--ECcch
Confidence 5689999999999999999874211 24677787764 468999999999985 55543
No 413
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.68 E-value=0.00016 Score=64.51 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=26.3
Q ss_pred CeEEEEEeCCCCccc---HhH-----HhhccccCCEEEEEEeCCCC
Q 010985 142 TTRFTILDAPGHKSY---VPN-----MISGASQADIGVLVISARKG 179 (496)
Q Consensus 142 ~~~i~liDtpG~~~~---~~~-----~~~~~~~aD~~ilVvda~~g 179 (496)
.....|+||||..+- +.. ........|.++.|||+...
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~ 131 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHA 131 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHh
Confidence 456789999996532 221 23345578999999998754
No 414
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00022 Score=72.67 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=41.7
Q ss_pred CCeEEEEEeCCCCccc----HhHH---hhccc--cCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 010985 141 ETTRFTILDAPGHKSY----VPNM---ISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 211 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~---~~~~~--~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN 211 (496)
.++.+.||||||.... +..+ ..... ...-.+||+||+.+. ....+.+.....+++.. +++|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--------~~~~~~~~~f~~~~~~g--lIlT 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--------HHTLTVLKAYESLNYRR--ILLT 367 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--------HHHHHHHHHhcCCCCCE--EEEE
Confidence 4678899999996532 2222 22221 244688999999872 23444455555667774 4899
Q ss_pred eccC
Q 010985 212 KMDD 215 (496)
Q Consensus 212 K~D~ 215 (496)
|+|-
T Consensus 368 KLDE 371 (432)
T PRK12724 368 KLDE 371 (432)
T ss_pred cccC
Confidence 9997
No 415
>PRK00098 GTPase RsgA; Reviewed
Probab=97.66 E-value=5e-05 Score=75.15 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+..++++|++|+|||||+|+|+.
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999963
No 416
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.66 E-value=0.00013 Score=71.74 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=58.0
Q ss_pred CCCCcc-cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHH
Q 010985 150 APGHKS-YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 228 (496)
Q Consensus 150 tpG~~~-~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i 228 (496)
=|||-. -.+++...+..||++|+|+|+..+.. ....+....+. +.| +|+|+||+|+. + .+..+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~-------~~~~~l~~~~~--~kp-~iiVlNK~DL~--~--~~~~~~~ 72 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLS-------SENPMIDKIIG--NKP-RLLILNKSDLA--D--PEVTKKW 72 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------CCChhHHHHhC--CCC-EEEEEEchhcC--C--HHHHHHH
Confidence 477744 46667777899999999999987632 12222222221 556 78999999983 2 2222222
Q ss_pred HHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 229 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 229 ~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
..+++..+ .+++++|+.++.|+..+.+
T Consensus 73 ----~~~~~~~~------~~vi~vSa~~~~gi~~L~~ 99 (287)
T PRK09563 73 ----IEYFEEQG------IKALAINAKKGQGVKKILK 99 (287)
T ss_pred ----HHHHHHcC------CeEEEEECCCcccHHHHHH
Confidence 22222222 3689999999999987543
No 417
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.65 E-value=0.00066 Score=61.77 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=49.0
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
..+.+.|+|||+... ..+...+..||.+++++.++.... ....+.+..+...+.+ +.+|+||+|.
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~-------~~~~~~~~~l~~~~~~-~~vV~N~~~~ 155 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGL-------HDLERAVELVRHFGIP-VGVVINKYDL 155 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccH-------HHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 578899999997533 244556788999999999886532 2456666777778887 6789999996
No 418
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.65 E-value=0.00035 Score=72.28 Aligned_cols=63 Identities=24% Similarity=0.415 Sum_probs=39.5
Q ss_pred CeEEEEEeCCCCcccHhHH------hhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeecc
Q 010985 142 TTRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 214 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~------~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviNK~D 214 (496)
.+.+.||||||....-... +..+..+|.+++|+||..+ ....+.+.... .+++. -+++||+|
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---------q~av~~a~~F~~~l~i~--gvIlTKlD 243 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---------QQAKNQAKAFHEAVGIG--GIIITKLD 243 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---------HHHHHHHHHHHhcCCCC--EEEEeccc
Confidence 3478999999965542222 2335578999999999876 12233332222 23443 46899999
Q ss_pred C
Q 010985 215 D 215 (496)
Q Consensus 215 ~ 215 (496)
-
T Consensus 244 ~ 244 (437)
T PRK00771 244 G 244 (437)
T ss_pred C
Confidence 6
No 419
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.64 E-value=0.00057 Score=73.60 Aligned_cols=179 Identities=17% Similarity=0.240 Sum_probs=124.6
Q ss_pred EeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe-eccCCCCCccHHHHH
Q 010985 148 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERYD 226 (496)
Q Consensus 148 iDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN-K~D~~~~~~~~~~~~ 226 (496)
-|+-|.-+-+...+..+...+.-+=|+.+.-| +-++.+..++...+. +|+..| |.+.
T Consensus 392 ad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG---------~i~~~Dv~~a~~~~a--~i~~Fnv~~~~----------- 449 (587)
T TIGR00487 392 ADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVG---------GITETDISLASASNA--IIIGFNVRPDA----------- 449 (587)
T ss_pred eCCcchHHHHHHHHHhhcccCCeEEEEEeecC---------CCchhhHHHHHhcCC--EEEEEecCCCH-----------
Confidence 68889888888888888888888888988877 567888888887763 566666 3332
Q ss_pred HHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEEEc--
Q 010985 227 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK-- 304 (496)
Q Consensus 227 ~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~~~-- 304 (496)
..+...+.. .++++.- .=|-++.+. +.+.+..+..|......--...|..+|+
T Consensus 450 ----~~~~~a~~~------~v~i~~~-----~iIY~l~d~----------~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~ 504 (587)
T TIGR00487 450 ----TAKNVAEAE------NVDIRYY-----SVIYKLIDE----------IRAAMKGMLDPEYEEEIIGQAEVRQVFNVP 504 (587)
T ss_pred ----HHHHHHHHc------CCeEEEe-----ChHHHHHHH----------HHHHHHhccCcceeeEeeeeEEEEEEEecC
Confidence 112222222 2333322 112222221 3344444434433222233556677884
Q ss_pred cCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEec
Q 010985 305 DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 375 (496)
Q Consensus 305 ~~G~v~~g~v~~G~l~~g~~v~~~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 375 (496)
..|.++..+|..|+|+.|..+.+...+. ..+|.||+++++++.++..|+-|++.+.+. .+++.||++-.
T Consensus 505 ~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~~ 576 (587)
T TIGR00487 505 KIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIEA 576 (587)
T ss_pred CCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEEE
Confidence 4589999999999999999999988764 467999999999999999999999999965 67999999854
No 420
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.63 E-value=0.00023 Score=71.56 Aligned_cols=127 Identities=19% Similarity=0.200 Sum_probs=72.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCc-----------chhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQV-----------DDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV 131 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i-----------~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~ 131 (496)
.++..|+++|++|+||||.+-.|....... |...+...++- ..|+.+ -|+.+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL--------k~Ya~i---------m~vp~ 263 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL--------KTYADI---------MGVPL 263 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH--------HHHHHH---------hCCce
Confidence 347889999999999999999886544311 11000000000 011222 23333
Q ss_pred eeeeEE-------EEeCCeEEEEEeCCCCccc----HhHHhhccc--cCCEEEEEEeCCCCccccccCCCCchHHHHHHH
Q 010985 132 EVGRAH-------FETETTRFTILDAPGHKSY----VPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLA 198 (496)
Q Consensus 132 ~~~~~~-------~~~~~~~i~liDtpG~~~~----~~~~~~~~~--~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~ 198 (496)
...... .....+.+.|+||.|+..+ +..+...+. ...-.-||++|+... ...++.+...
T Consensus 264 ~vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--------~dlkei~~~f 335 (407)
T COG1419 264 EVVYSPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--------EDLKEIIKQF 335 (407)
T ss_pred EEecCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--------HHHHHHHHHh
Confidence 332221 1224678999999997655 333332222 345567888887642 2345555666
Q ss_pred HHcCCceEEEEEeeccCC
Q 010985 199 KTLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 199 ~~~~~~~~ivviNK~D~~ 216 (496)
..+++.. +++||+|-+
T Consensus 336 ~~~~i~~--~I~TKlDET 351 (407)
T COG1419 336 SLFPIDG--LIFTKLDET 351 (407)
T ss_pred ccCCcce--eEEEccccc
Confidence 6677774 479999974
No 421
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.61 E-value=0.00097 Score=73.19 Aligned_cols=180 Identities=14% Similarity=0.112 Sum_probs=127.0
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe-eccCCCCCccHHHH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 225 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN-K~D~~~~~~~~~~~ 225 (496)
=-|+-|.-+.+...+..+....+-+=|+.+.-| +-|...+.++...+. +|+..| |.+.
T Consensus 548 Kad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG---------~it~~Dv~lA~~~~a--~ii~Fnv~~~~---------- 606 (742)
T CHL00189 548 KTDTQGSIEAIINSISQIPQKKVQLNILYASLG---------EVTETDVEFASTTNA--EILAFNTNLAP---------- 606 (742)
T ss_pred EeCCcchHHHHHHHHHhcCCCcEEEEEEEeecC---------CCCHHHHHHHHhcCC--EEEEeeCCCCH----------
Confidence 379999988899999888887888899998887 578888888888764 566666 3331
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEEEc-
Q 010985 226 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK- 304 (496)
Q Consensus 226 ~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~~~- 304 (496)
.++...+.. .+.+..- .=|-++.+. +.+++..+-.|.......-++.|..+|+
T Consensus 607 -----~~~~~a~~~------~v~i~~~-----~iIY~lid~----------~~~~~~~~l~~~~~~~~~g~a~v~~vF~~ 660 (742)
T CHL00189 607 -----GAKKAARKL------NIIIKEY-----QVIYDLLEY----------IEALMEDLLDPEYKKVPIGEAEVKTVFPL 660 (742)
T ss_pred -----HHHHHHHHc------CCEEEEe-----ChHHHHHHH----------HHHHHhhccCceeeeeeceeEEeeEEEec
Confidence 111222222 2333322 112222221 3344444444444333445667788884
Q ss_pred cCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEec
Q 010985 305 DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 375 (496)
Q Consensus 305 ~~G~v~~g~v~~G~l~~g~~v~~~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 375 (496)
..|.++.++|.+|.|+.|..+.++..+. ..+|.||+++.+++.++..|+-|++.+.+. .+++.||++-.
T Consensus 661 ~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie~ 732 (742)
T CHL00189 661 AKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIHA 732 (742)
T ss_pred CCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEEE
Confidence 3589999999999999999999998874 467999999999999999999999999864 56999999854
No 422
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.61 E-value=0.0012 Score=73.04 Aligned_cols=179 Identities=17% Similarity=0.225 Sum_probs=124.6
Q ss_pred EeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe-eccCCCCCccHHHHH
Q 010985 148 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERYD 226 (496)
Q Consensus 148 iDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN-K~D~~~~~~~~~~~~ 226 (496)
-|+-|.-+-+...+..+..-++-+=|+.+.-| +-+...+.++...+. +|+..| |.+.
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG---------~it~~Dv~la~~~~a--~ii~Fnv~~~~----------- 651 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVG---------AITESDVTLAAASNA--IIIGFNVRPDA----------- 651 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccC---------CCCHHHHHHHHhcCC--EEEEEcCCCCH-----------
Confidence 68888888888888888888888889988877 467888888877663 566666 3332
Q ss_pred HHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEEEc--
Q 010985 227 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK-- 304 (496)
Q Consensus 227 ~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~~~-- 304 (496)
.+....+.. .+.+..-+ =|-++.+. +.+.+..+-.|.....-.-...|..+|+
T Consensus 652 ----~~~~~a~~~------~v~i~~~~-----iIY~l~d~----------~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~ 706 (787)
T PRK05306 652 ----KARKLAEQE------GVDIRYYS-----IIYDLIDD----------VKAAMSGMLEPEYEEEIIGQAEVREVFKVS 706 (787)
T ss_pred ----HHHHHHHHc------CCEEEEeC-----hHHHHHHH----------HHHHHhhccCchhheeeeeeEEEEEEEecC
Confidence 112222222 23333221 12222221 3334444433333332233566778884
Q ss_pred cCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEec
Q 010985 305 DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 375 (496)
Q Consensus 305 ~~G~v~~g~v~~G~l~~g~~v~~~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 375 (496)
..|.++.++|..|.|+.|..+.+...+. ..+|.||.++.++|.++..|+-|++.+.+. .+++.||+|-.
T Consensus 707 k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie~ 778 (787)
T PRK05306 707 KVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIEA 778 (787)
T ss_pred CCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEEE
Confidence 4689999999999999999999998774 578999999999999999999999999865 67999999853
No 423
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.00034 Score=72.43 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=40.6
Q ss_pred CCeEEEEEeCCCCccc-------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~ 213 (496)
.++.+.||||||...+ +..++......+-+.||++++.+. ....+.+.....+++.. +++||+
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--------~~l~~~~~~f~~~~~~~--vI~TKl 367 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--------EDLKDIYKHFSRLPLDG--LIFTKL 367 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--------HHHHHHHHHhCCCCCCE--EEEecc
Confidence 3578999999997544 333333222445778999998652 12333344445555542 689999
Q ss_pred cC
Q 010985 214 DD 215 (496)
Q Consensus 214 D~ 215 (496)
|-
T Consensus 368 De 369 (424)
T PRK05703 368 DE 369 (424)
T ss_pred cc
Confidence 97
No 424
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.51 E-value=7.6e-05 Score=73.87 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=49.5
Q ss_pred cccccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEee
Q 010985 54 SQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV 133 (496)
Q Consensus 54 ~~~~~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~ 133 (496)
.........+..++++|+|-||+||||++|.|...... .....+|+|...
T Consensus 241 gny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C------------------------------~vg~~pGvT~sm 290 (435)
T KOG2484|consen 241 GNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKAC------------------------------NVGNVPGVTRSM 290 (435)
T ss_pred cCcccccccCcceEeeeecCCCCChhHHHHHHHHhccc------------------------------cCCCCccchhhh
Confidence 33444556788999999999999999999999633221 222347888877
Q ss_pred eeEEEEeCCeEEEEEeCCCC
Q 010985 134 GRAHFETETTRFTILDAPGH 153 (496)
Q Consensus 134 ~~~~~~~~~~~i~liDtpG~ 153 (496)
-...+ +..+.|+|.||.
T Consensus 291 qeV~L---dk~i~llDsPgi 307 (435)
T KOG2484|consen 291 QEVKL---DKKIRLLDSPGI 307 (435)
T ss_pred hheec---cCCceeccCCce
Confidence 66655 577999999994
No 425
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.50 E-value=0.00097 Score=66.29 Aligned_cols=87 Identities=18% Similarity=0.210 Sum_probs=61.4
Q ss_pred hcccEEeeeeEEEEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCch---HHHHHHHHH--
Q 010985 126 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT---REHVMLAKT-- 200 (496)
Q Consensus 126 ~~G~T~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t---~e~~~~~~~-- 200 (496)
.|-.|.-+....|+..+..+.++|.+|++.=.+.++.....++++|+|++-++-..- -++ ...+ .+-+.+...
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~-l~E-D~~~NRM~eS~~LF~sI~ 255 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQV-LEE-DETTNRMHESLKLFESIC 255 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhh-ccc-ccchhHHHHHHHHHHHHh
Confidence 444566677788999999999999999999999999999999999999998753210 000 0111 222222222
Q ss_pred -----cCCceEEEEEeeccC
Q 010985 201 -----LGVTKLLLVVNKMDD 215 (496)
Q Consensus 201 -----~~~~~~ivviNK~D~ 215 (496)
.+.+ +|+++||.|+
T Consensus 256 n~~~F~~ts-iiLFLNK~DL 274 (354)
T KOG0082|consen 256 NNKWFANTS-IILFLNKKDL 274 (354)
T ss_pred cCcccccCc-EEEEeecHHH
Confidence 1344 9999999998
No 426
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00034 Score=73.11 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=22.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHH
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..+.+-.|+++|+.|+||||++..|..
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345578999999999999999988864
No 427
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00048 Score=69.20 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.+...++++|+.|+||||++..|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 428
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.001 Score=67.19 Aligned_cols=135 Identities=19% Similarity=0.278 Sum_probs=72.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCC------c------chhHHHHHHHHHhhcCccchhhhhhcCCchhhhhccc
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQ------V------DDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGK 129 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~------i------~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~ 129 (496)
.++...|.++|--||||||..+.|...... + ....+..++.-+...|-..|.. -....+.+-
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~--~~~~~Pv~I---- 170 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS--GTEKDPVEI---- 170 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC--CCCCCHHHH----
Confidence 456788999999999999999988643321 0 0001111222222222111100 000011110
Q ss_pred EEeeeeEEEEeCCeEEEEEeCCCCcc----cHhHH--hhccccCCEEEEEEeCCCCccccccCCCCchHHHH-H-HHHHc
Q 010985 130 TVEVGRAHFETETTRFTILDAPGHKS----YVPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHV-M-LAKTL 201 (496)
Q Consensus 130 T~~~~~~~~~~~~~~i~liDtpG~~~----~~~~~--~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~-~~~~~ 201 (496)
..-+...+...++.+.|+||+|--. .+.++ +.....+|=++||+||..| |..... . .-..+
T Consensus 171 -ak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G----------QdA~~~A~aF~e~l 239 (451)
T COG0541 171 -AKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG----------QDAVNTAKAFNEAL 239 (451)
T ss_pred -HHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc----------hHHHHHHHHHhhhc
Confidence 0001112334567899999999322 23333 3345689999999999987 443322 1 22234
Q ss_pred CCceEEEEEeeccC
Q 010985 202 GVTKLLLVVNKMDD 215 (496)
Q Consensus 202 ~~~~~ivviNK~D~ 215 (496)
++. =|+++|+|-
T Consensus 240 ~it--GvIlTKlDG 251 (451)
T COG0541 240 GIT--GVILTKLDG 251 (451)
T ss_pred CCc--eEEEEcccC
Confidence 565 368999996
No 429
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.45 E-value=0.00025 Score=69.77 Aligned_cols=80 Identities=20% Similarity=0.147 Sum_probs=51.5
Q ss_pred cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCc
Q 010985 164 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 243 (496)
Q Consensus 164 ~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 243 (496)
+..+|.+++|+|+..+.+. . ....+.+..+...++| +++|+||+|+... .+.. . ........
T Consensus 76 ~anvD~vllV~d~~~p~~s----~-~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~---~~~~----~-~~~~~~~~---- 137 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFN----P-RLLDRYLVAAEAAGIE-PVIVLTKADLLDD---EEEE----L-ELVEALAL---- 137 (287)
T ss_pred EEeCCEEEEEEEcCCCCCC----H-HHHHHHHHHHHHcCCC-EEEEEEHHHCCCh---HHHH----H-HHHHHHhC----
Confidence 6789999999999876310 0 1223345556667888 7899999999321 1111 1 11112223
Q ss_pred cCCeeEEeeccccccccccc
Q 010985 244 KKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 244 ~~~~~~ipiSa~~g~gi~~l 263 (496)
..+++++||++|.|++++
T Consensus 138 --g~~v~~vSA~~g~gi~~L 155 (287)
T cd01854 138 --GYPVLAVSAKTGEGLDEL 155 (287)
T ss_pred --CCeEEEEECCCCccHHHH
Confidence 347899999999999874
No 430
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.45 E-value=0.00051 Score=69.85 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=58.7
Q ss_pred cccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHH
Q 010985 154 KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 233 (496)
Q Consensus 154 ~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~ 233 (496)
++|..........+|++++|+|+.+.. ......+.... .+.| +++|+||+|+...+.. .+++.+.++
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~-~~~p-iilV~NK~DLl~k~~~---~~~~~~~l~ 117 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFV-GGNP-VLLVGNKIDLLPKSVN---LSKIKEWMK 117 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHh-CCCC-EEEEEEchhhCCCCCC---HHHHHHHHH
Confidence 355554333446889999999986542 12222222111 1445 8899999998432222 234444455
Q ss_pred HHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 234 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 234 ~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
++++..++. ...++++||++|.|++++..
T Consensus 118 ~~~k~~g~~---~~~i~~vSAk~g~gv~eL~~ 146 (360)
T TIGR03597 118 KRAKELGLK---PVDIILVSAKKGNGIDELLD 146 (360)
T ss_pred HHHHHcCCC---cCcEEEecCCCCCCHHHHHH
Confidence 566666653 12588999999999998644
No 431
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.40 E-value=0.00064 Score=69.61 Aligned_cols=175 Identities=18% Similarity=0.167 Sum_probs=88.5
Q ss_pred hhhccccccccccCCcc-eeEEEEEecCCCChHHHHHHHHHHhCCcchh--HH----------HHHHHHHhhc--Cccch
Q 010985 48 AVEDAESQQETEGNNKR-HLNVVFIGHVDAGKSTTGGQILFLSGQVDDR--TI----------QKYEKEAKDK--SRESW 112 (496)
Q Consensus 48 ~~~~~~~~~~~~~~~~~-~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~--~~----------~~~~~~~~~~--g~~s~ 112 (496)
++-..++..+.++.... .++|+++|.-.|||||.+..+. +...++.+ .| ..-.+++..- ....|
T Consensus 290 EVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiA-qARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREf 368 (980)
T KOG0447|consen 290 EVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIA-QARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREF 368 (980)
T ss_pred HHHHHHhcccccccccccCceEEEEcCccccchHHHHHHH-HhccCcCCCcceeccCCeEEEeccCcchhhhhccccccc
Confidence 33444555555555444 5799999999999999999774 22222211 00 0000111000 00001
Q ss_pred hhhhhcCC-----c-----hhhhhcccEEeeeeEEEEeCC---eEEEEEeCCCCccc-------------HhHHhhcccc
Q 010985 113 YMAYIMDT-----N-----EEERIKGKTVEVGRAHFETET---TRFTILDAPGHKSY-------------VPNMISGASQ 166 (496)
Q Consensus 113 ~~~~~~d~-----~-----~~e~~~G~T~~~~~~~~~~~~---~~i~liDtpG~~~~-------------~~~~~~~~~~ 166 (496)
.+.--.|- . ......|.|+......++..| ..+.|+|.||.... +......+.+
T Consensus 369 DLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~N 448 (980)
T KOG0447|consen 369 DLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQN 448 (980)
T ss_pred cccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcC
Confidence 11000000 0 001145667666555555544 56899999994322 3444555789
Q ss_pred CCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC-ccHHHHHHHH
Q 010985 167 ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN-WSKERYDEIE 229 (496)
Q Consensus 167 aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~-~~~~~~~~i~ 229 (496)
++++||+|-- |...+.- ...-.....+.-+|.+ -|+|++|.|+...+ -+.++++.|.
T Consensus 449 PNAIILCIQD--GSVDAER---SnVTDLVsq~DP~GrR-TIfVLTKVDlAEknlA~PdRI~kIl 506 (980)
T KOG0447|consen 449 PNAIILCIQD--GSVDAER---SIVTDLVSQMDPHGRR-TIFVLTKVDLAEKNVASPSRIQQII 506 (980)
T ss_pred CCeEEEEecc--CCcchhh---hhHHHHHHhcCCCCCe-eEEEEeecchhhhccCCHHHHHHHH
Confidence 9999999742 2111000 0111222334445655 78999999995332 2344554443
No 432
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.39 E-value=0.00086 Score=64.99 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=42.9
Q ss_pred CeEEEEEeCCCCccc----HhHHhhc--cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 142 TTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~~~i~liDtpG~~~~----~~~~~~~--~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
++.+.||||||...+ +..+... ...+|-.+||+||+... ....+.+......++.. +++||+|-
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--------~d~~~~~~~f~~~~~~~--~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--------HHHHHHHHHhCCCCCCE--EEEEeecC
Confidence 578999999996533 4433332 23678899999998541 23344445545567764 48999997
Q ss_pred C
Q 010985 216 H 216 (496)
Q Consensus 216 ~ 216 (496)
.
T Consensus 224 t 224 (270)
T PRK06731 224 T 224 (270)
T ss_pred C
Confidence 3
No 433
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.00024 Score=65.68 Aligned_cols=156 Identities=18% Similarity=0.212 Sum_probs=99.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|.++|+--+||||+-....++..-.. + .-.|....+|++-... .=..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne--T------------------------lflESTski~~d~is~----sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE--T------------------------LFLESTSKITRDHISN----SFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc--e------------------------eEeeccCcccHhhhhh----hhcce
Confidence 4599999999999999876643322110 0 0011112334433221 12568
Q ss_pred EEEeCCCCcccHhHHhh---ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCc---eEEEEEeeccCCCCC
Q 010985 146 TILDAPGHKSYVPNMIS---GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNKMDDHTVN 219 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~---~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~---~~ivviNK~D~~~~~ 219 (496)
.+||-||+-+|...... -.+.+-+.|+||||.+.-++ +.++-|+...++.++. .+=|++-|.|-...+
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~e------ala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYME------ALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHH------HHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 89999999888554432 24678889999999887553 5677777777776542 267899999975444
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL 258 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~ 258 (496)
+.-+.-..|.+...+-|+..|.. +-++.+..+|-....
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle-~v~vsf~LTSIyDHS 189 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLE-KVQVSFYLTSIYDHS 189 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhc-cceEEEEEeeecchH
Confidence 44455556777777777777765 234556666655443
No 434
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.0025 Score=62.45 Aligned_cols=129 Identities=16% Similarity=0.230 Sum_probs=68.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC------------cchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccE
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ------------VDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT 130 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~------------i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T 130 (496)
.+...|.++|-.|+||||.++.|.+..-. +....+..++...+..|-.-... ..|.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~-----------~~G~- 204 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG-----------KEGA- 204 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc-----------CCCC-
Confidence 44678899999999999999998654321 11111222333332222111000 0011
Q ss_pred EeeeeE------EEEeCCeEEEEEeCCCCccc-------HhHHhhccc-----cCCEEEEEEeCCCCccccccCCCCchH
Q 010985 131 VEVGRA------HFETETTRFTILDAPGHKSY-------VPNMISGAS-----QADIGVLVISARKGEFETGFEKGGQTR 192 (496)
Q Consensus 131 ~~~~~~------~~~~~~~~i~liDtpG~~~~-------~~~~~~~~~-----~aD~~ilVvda~~g~~e~~~~~~~~t~ 192 (496)
|.... ...-.++.+.|+||+|--.. ++...+-+. .++-+++++||..| ....
T Consensus 205 -DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG---------qnal 274 (340)
T COG0552 205 -DPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG---------QNAL 274 (340)
T ss_pred -CcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC---------hhHH
Confidence 00000 01124788999999993322 222222222 23448888899988 2334
Q ss_pred HHHHHHH-HcCCceEEEEEeeccC
Q 010985 193 EHVMLAK-TLGVTKLLLVVNKMDD 215 (496)
Q Consensus 193 e~~~~~~-~~~~~~~ivviNK~D~ 215 (496)
++.+... ..++. - +++||+|-
T Consensus 275 ~QAk~F~eav~l~-G-iIlTKlDg 296 (340)
T COG0552 275 SQAKIFNEAVGLD-G-IILTKLDG 296 (340)
T ss_pred HHHHHHHHhcCCc-e-EEEEeccc
Confidence 4443333 34666 3 58999995
No 435
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.32 E-value=0.0014 Score=54.23 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=43.3
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCc---eEEEEEee
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNK 212 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~---~~ivviNK 212 (496)
.+.++|||+.... .....+..+|.++++++++.... ..+.+.+..+..++.+ ++.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSI-------RNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHH-------HHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999997553 34456778999999999887543 2455566666666643 68889886
No 436
>PRK12288 GTPase RsgA; Reviewed
Probab=97.32 E-value=0.00098 Score=67.17 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=51.1
Q ss_pred cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCc
Q 010985 164 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 243 (496)
Q Consensus 164 ~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 243 (496)
++++|.+++|.+.... + +. ....+.+..+...++| .++|+||+|+... . .... ..+....+...|
T Consensus 118 aANvD~vlIV~s~~p~-~----s~-~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~--~--~~~~-~~~~~~~y~~~g--- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-L----SL-NIIDRYLVACETLGIE-PLIVLNKIDLLDD--E--GRAF-VNEQLDIYRNIG--- 182 (347)
T ss_pred EEEccEEEEEEeCCCC-C----CH-HHHHHHHHHHHhcCCC-EEEEEECccCCCc--H--HHHH-HHHHHHHHHhCC---
Confidence 5789999888886533 2 11 1223334455667888 7789999999321 1 1111 122223334443
Q ss_pred cCCeeEEeecccccccccccc
Q 010985 244 KKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 244 ~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+++++||++|.|++++.
T Consensus 183 ---~~v~~vSA~tg~GideL~ 200 (347)
T PRK12288 183 ---YRVLMVSSHTGEGLEELE 200 (347)
T ss_pred ---CeEEEEeCCCCcCHHHHH
Confidence 468999999999998853
No 437
>PRK10867 signal recognition particle protein; Provisional
Probab=97.30 E-value=0.0014 Score=67.84 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCCccc----HhHHhh--ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~~~--~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviNK~ 213 (496)
.++.+.|+||||.-.. +..+.. .+..+|-++||+|+..| ....+.+.... .+++. -+++||+
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---------q~av~~a~~F~~~~~i~--giIlTKl 250 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---------QDAVNTAKAFNEALGLT--GVILTKL 250 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---------HHHHHHHHHHHhhCCCC--EEEEeCc
Confidence 4678999999995432 222211 22367888999999765 12233333222 34554 3578999
Q ss_pred cC
Q 010985 214 DD 215 (496)
Q Consensus 214 D~ 215 (496)
|-
T Consensus 251 D~ 252 (433)
T PRK10867 251 DG 252 (433)
T ss_pred cC
Confidence 95
No 438
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.29 E-value=0.0022 Score=58.00 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=46.1
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
.+.++|||+.... .+...+..+|.+|+++++..... ..+...+..+...+.+.+.+++|++|.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSL-------RDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchH-------HHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 7999999986543 34556789999999999887543 234455556666676767889999986
No 439
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.28 E-value=7.6e-05 Score=66.15 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=98.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
..++.|+|.-++||++++.+-+...- . +++. .-+-.|.....+.|+.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nf----------s------------~~yR---------AtIgvdfalkVl~wdd~t 73 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNF----------S------------YHYR---------ATIGVDFALKVLQWDDKT 73 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHH----------H------------HHHH---------HHHhHHHHHHHhccChHH
Confidence 35788999999999999987653211 1 1110 1122222223344444
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--C--CceEEEEEeeccCCC
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--G--VTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~--~~~~ivviNK~D~~~ 217 (496)
.++.|+|.+|++.|-..+.-..+.|.++.+|+|.+....+... ...++.+.--..| | +| ++...||+|+
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~---skwkqdldsk~qLpng~Pv~-~vllankCd~-- 147 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPV---SKWKQDLDSKLQLPNGTPVP-CVLLANKCDQ-- 147 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHH---HHHHHhccCcccCCCCCcch-heeccchhcc--
Confidence 3467999999999877777777899999999998876432111 1112221111111 2 34 6788999997
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. +....+.-..+..+.++.||. .+..+|++...|+.+..
T Consensus 148 e---~~a~~~~~~~~d~f~kengf~-----gwtets~Kenkni~Ea~ 186 (229)
T KOG4423|consen 148 E---KSAKNEATRQFDNFKKENGFE-----GWTETSAKENKNIPEAQ 186 (229)
T ss_pred C---hHhhhhhHHHHHHHHhccCcc-----ceeeeccccccChhHHH
Confidence 2 223334445677778888876 57899999999998853
No 440
>PRK01889 GTPase RsgA; Reviewed
Probab=97.27 E-value=0.0011 Score=67.36 Aligned_cols=80 Identities=23% Similarity=0.244 Sum_probs=53.2
Q ss_pred cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCc
Q 010985 164 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 243 (496)
Q Consensus 164 ~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 243 (496)
+.++|.+++|+++..+ + + .....+.+..+...+++ .++|+||+||. +... +..+.+..+ ..
T Consensus 110 aANvD~vliV~s~~p~-~----~-~~~ldr~L~~a~~~~i~-piIVLNK~DL~--~~~~----~~~~~~~~~--~~---- 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-F----N-LRRIERYLALAWESGAE-PVIVLTKADLC--EDAE----EKIAEVEAL--AP---- 170 (356)
T ss_pred EEeCCEEEEEEecCCC-C----C-hhHHHHHHHHHHHcCCC-EEEEEEChhcC--CCHH----HHHHHHHHh--CC----
Confidence 5789999999999743 2 1 12445566777788998 57899999993 2111 122222222 22
Q ss_pred cCCeeEEeecccccccccccc
Q 010985 244 KKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 244 ~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..+++++|+++|.|++++.
T Consensus 171 --g~~Vi~vSa~~g~gl~~L~ 189 (356)
T PRK01889 171 --GVPVLAVSALDGEGLDVLA 189 (356)
T ss_pred --CCcEEEEECCCCccHHHHH
Confidence 3578999999999998753
No 441
>PRK13796 GTPase YqeH; Provisional
Probab=97.25 E-value=0.0014 Score=66.78 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=58.0
Q ss_pred HhHHhhccccCC-EEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHH
Q 010985 157 VPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF 235 (496)
Q Consensus 157 ~~~~~~~~~~aD-~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~ 235 (496)
...++..+..+| .+++|||+.+.. ......+.... -+.| +++|+||+|+...+... +++.+.+..+
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~-~~kp-viLViNK~DLl~~~~~~---~~i~~~l~~~ 125 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFV-GNNP-VLLVGNKADLLPKSVKK---NKVKNWLRQE 125 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccCC--------CchhHHHHHHh-CCCC-EEEEEEchhhCCCccCH---HHHHHHHHHH
Confidence 455777777777 999999997632 12222232221 1455 88999999994322222 2333344455
Q ss_pred HHhcCCCccCCeeEEeeccccccccccccc
Q 010985 236 LKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 236 l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.+..|+. ...++.+||++|.|+.++.+
T Consensus 126 ~k~~g~~---~~~v~~vSAk~g~gI~eL~~ 152 (365)
T PRK13796 126 AKELGLR---PVDVVLISAQKGHGIDELLE 152 (365)
T ss_pred HHhcCCC---cCcEEEEECCCCCCHHHHHH
Confidence 5666653 22589999999999988644
No 442
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.20 E-value=0.004 Score=54.18 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=43.2
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEeeccC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDD 215 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~~~~~~ivviNK~D~ 215 (496)
+.+.++|+|+... ......+..+|.+++|++++.... ..+...+..+.. .+..++.+++|+.+.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSI-------TDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHH-------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 7899999998543 333566788999999999876432 123344444432 234457899999985
No 443
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.19 E-value=0.0023 Score=66.20 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCCccc----HhHH--hhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSY----VPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~--~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviNK~ 213 (496)
.++.+.|+||||...+ +..+ +.....+|.++||+|+..+ ....+.+.... .+++. =+++||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---------q~~~~~a~~f~~~v~i~--giIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---------QDAVNTAKTFNERLGLT--GVVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---------HHHHHHHHHHHhhCCCC--EEEEeCc
Confidence 4677999999995332 2222 1123468999999999865 23333333332 45665 3579999
Q ss_pred cC
Q 010985 214 DD 215 (496)
Q Consensus 214 D~ 215 (496)
|-
T Consensus 250 D~ 251 (428)
T TIGR00959 250 DG 251 (428)
T ss_pred cC
Confidence 95
No 444
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.17 E-value=0.00044 Score=62.81 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=41.5
Q ss_pred eEEEEEeCCCCcc------cHhHHhhccccC---CEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 010985 143 TRFTILDAPGHKS------YVPNMISGASQA---DIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 213 (496)
Q Consensus 143 ~~i~liDtpG~~~------~~~~~~~~~~~a---D~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~ 213 (496)
-.+.++|+||+.+ .+++.++.+.+- =.+++++|+.--+--..|- ......+..+..+.+|+ |=|++||
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~Kfi--SG~lsAlsAMi~lE~P~-INvlsKM 174 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFI--SGCLSALSAMISLEVPH-INVLSKM 174 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHH--HHHHHHHHHHHHhcCcc-hhhhhHH
Confidence 4578999999543 367777766542 2567777765321000000 11222344455678995 5799999
Q ss_pred cCC
Q 010985 214 DDH 216 (496)
Q Consensus 214 D~~ 216 (496)
|+.
T Consensus 175 DLl 177 (273)
T KOG1534|consen 175 DLL 177 (273)
T ss_pred HHh
Confidence 984
No 445
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.14 E-value=0.0012 Score=69.05 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=38.9
Q ss_pred EeCCeEEEEEeCCCCcccHh---HH---hhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 010985 139 ETETTRFTILDAPGHKSYVP---NM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 212 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~---~~---~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK 212 (496)
...++.+.+|||+|....-. .. +.....+.-.+||+|+..+. ....+.+......++.. +++||
T Consensus 331 ~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--------~~l~~i~~~f~~~~~~g--~IlTK 400 (484)
T PRK06995 331 ELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--------DTLNEVVQAYRGPGLAG--CILTK 400 (484)
T ss_pred hccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--------HHHHHHHHHhccCCCCE--EEEeC
Confidence 44567899999999433221 11 11122234478999998762 12233344444455553 47899
Q ss_pred ccC
Q 010985 213 MDD 215 (496)
Q Consensus 213 ~D~ 215 (496)
+|-
T Consensus 401 lDe 403 (484)
T PRK06995 401 LDE 403 (484)
T ss_pred CCC
Confidence 996
No 446
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0013 Score=65.19 Aligned_cols=68 Identities=25% Similarity=0.281 Sum_probs=43.7
Q ss_pred EEeCCeEEEEEeCCCCcc----cHhHHhhc--cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 010985 138 FETETTRFTILDAPGHKS----YVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 211 (496)
Q Consensus 138 ~~~~~~~i~liDtpG~~~----~~~~~~~~--~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN 211 (496)
|.-+++.+.|+||.|... ...+|+.- +-.+|-+|+|+||+-| |..+....+-...+.---|++|
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG----------Qaae~Qa~aFk~~vdvg~vIlT 248 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG----------QAAEAQARAFKETVDVGAVILT 248 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc----------HhHHHHHHHHHHhhccceEEEE
Confidence 444688899999999322 24444333 3469999999999987 6555433332222221246899
Q ss_pred eccC
Q 010985 212 KMDD 215 (496)
Q Consensus 212 K~D~ 215 (496)
|+|-
T Consensus 249 KlDG 252 (483)
T KOG0780|consen 249 KLDG 252 (483)
T ss_pred eccc
Confidence 9995
No 447
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.017 Score=60.03 Aligned_cols=180 Identities=18% Similarity=0.221 Sum_probs=112.5
Q ss_pred EeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHH
Q 010985 148 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDE 227 (496)
Q Consensus 148 iDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~ 227 (496)
-||-|.-+-+...+..+...++-+=++.+.-| +-|+....++...+ - +|+..|=- + ..+
T Consensus 313 aDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG---------~ite~DV~lA~as~-a-vIigFnV~----~--~~~---- 371 (509)
T COG0532 313 ADTQGSLEALKGSLKKLGVDEVKVRIIHAGVG---------GITESDVMLAAASD-A-VIIGFNVR----V--DPE---- 371 (509)
T ss_pred EcccchHHHHHHHHHhcCCCceEEEEEEeecC---------CCChhhHHHHHhcC-C-EEEEEecC----C--CHH----
Confidence 68888777777777777777777777777666 45666666666665 2 56666521 1 111
Q ss_pred HHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEEE--cc
Q 010985 228 IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KD 305 (496)
Q Consensus 228 i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~~--~~ 305 (496)
.+++.+..+ +.+..- .=|..+.+. +..++..+..|.....-.-...+..+| +.
T Consensus 372 ----a~~~ae~~~------V~I~~~-----~iIY~lied----------~~~~~~g~l~p~~~e~~~g~~~~r~v~~~~k 426 (509)
T COG0532 372 ----ARRLAESEG------VKIRYY-----DVIYKLIED----------VEAAMKGMLEPEKKERVIGLAEVRAVFKLPK 426 (509)
T ss_pred ----HHHHHHhcC------CcEEEc-----chHHHHHHH----------HHHHHHhccchhhhhhcccceEEEEEEEcCC
Confidence 111122222 222211 111122111 333444433333222111223333444 46
Q ss_pred CCeEEEEEEEEeeeecCCEEEEecCC-c--eEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEec
Q 010985 306 MGTVVMGKVESGSVREGDSLLVMPNK-A--QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 375 (496)
Q Consensus 306 ~G~v~~g~v~~G~l~~g~~v~~~p~~-~--~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 375 (496)
.|.++..+|..|.++.|..+.+...+ . ..+|.|++.+++++.++.+|+-|++.+.| ..+++.||+|-.
T Consensus 427 ~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~gD~le~ 497 (509)
T COG0532 427 VGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEGDILEV 497 (509)
T ss_pred CCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCCCCEEEE
Confidence 89999999999999999999988554 2 47999999999999999999999999997 567889998853
No 448
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.12 E-value=0.0021 Score=62.39 Aligned_cols=82 Identities=21% Similarity=0.275 Sum_probs=58.8
Q ss_pred ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCcc
Q 010985 165 SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVK 244 (496)
Q Consensus 165 ~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 244 (496)
.+.|-+++|+.+..+.+. ..+..+.|.++...|+. .++|+||+|+... +.... ++.......+||
T Consensus 78 ~n~d~~iiIvs~~~P~~~-----~~~ldR~Lv~ae~~gi~-pvIvlnK~DL~~~----~~~~~--~~~~~~y~~~gy--- 142 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFN-----TNLLDRYLVLAEAGGIE-PVIVLNKIDLLDD----EEAAV--KELLREYEDIGY--- 142 (301)
T ss_pred cccceEEEEEeccCCCCC-----HHHHHHHHHHHHHcCCc-EEEEEEccccCcc----hHHHH--HHHHHHHHhCCe---
Confidence 457889999999998763 23455667778888998 4678999999422 22222 455556666665
Q ss_pred CCeeEEeecccccccccccc
Q 010985 245 KDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 245 ~~~~~ipiSa~~g~gi~~l~ 264 (496)
+++.+|+++++|++++.
T Consensus 143 ---~v~~~s~~~~~~~~~l~ 159 (301)
T COG1162 143 ---PVLFVSAKNGDGLEELA 159 (301)
T ss_pred ---eEEEecCcCcccHHHHH
Confidence 58999999999998864
No 449
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.09 E-value=0.00018 Score=71.00 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=29.4
Q ss_pred hccccccccccCCcceeEEEEEecCCCChHHHHHHHH
Q 010985 50 EDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.+++.+...=...++.+.|+++|.||+||||++|.|.
T Consensus 292 I~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR 328 (572)
T KOG2423|consen 292 IQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLR 328 (572)
T ss_pred HHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHh
Confidence 3444444455567888999999999999999999994
No 450
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.0059 Score=59.59 Aligned_cols=143 Identities=18% Similarity=0.210 Sum_probs=77.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhc---CCchhhhhcccEEeeeeEEEE
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIM---DTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~---d~~~~e~~~G~T~~~~~~~~~ 139 (496)
.....|+++|.-++|||||++.|...+..-+. ..++. .....|+....|..+...
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans~~~dy-------------------r~yvFRpvS~Ea~E~~~~qt~~Id~~--- 243 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANSLDYDY-------------------RQYVFRPVSPEADECIFAQTHKIDPN--- 243 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccChHHhh-------------------HHHhcccCChhhhhhhccceeccccc---
Confidence 45677899999999999999988432111111 12222 111223333344333221
Q ss_pred eCCeEE-----------------EEEeCCCCccc-----------HhHHhhccccCCEEEEEEeCCCCccccccCCCCch
Q 010985 140 TETTRF-----------------TILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQT 191 (496)
Q Consensus 140 ~~~~~i-----------------~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t 191 (496)
.....+ .+.|+|-...+ +..|..-+..|.++|+|+|.-.. .+.
T Consensus 244 i~q~~i~fldtqpl~sfsi~e~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~~d---------~~l 314 (491)
T KOG4181|consen 244 IGQKSILFLDTQPLQSFSIRERHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGLAD---------EQL 314 (491)
T ss_pred cccceEEeeccccccchHHHhhhhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecchhH---------HHH
Confidence 112233 34555543222 44555556789999999997643 244
Q ss_pred HHHHHHHHHc----------------CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHh
Q 010985 192 REHVMLAKTL----------------GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKA 238 (496)
Q Consensus 192 ~e~~~~~~~~----------------~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~ 238 (496)
.+.+..+..+ ..|+++++-||.-. .|+.....+.+-..+..+++.
T Consensus 315 ir~L~~Ae~~rP~laifrh~~~~~r~~~p~lVFv~~KA~r--iDf~pr~rerl~~~~~~l~~~ 375 (491)
T KOG4181|consen 315 IRLLNAAERLRPTLAIFRHCKGYVRDHMPQLVFVRAKAHR--IDFEPRQRERLDKKLAYLYGP 375 (491)
T ss_pred HHHHHHHHhhCcccCccccccccccccCcceEEEeccccc--cccChHHHHHHHHHHHHHhcc
Confidence 4444444432 14678899999876 444444444554455555543
No 451
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0047 Score=67.71 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+..|+++|+.|+||||++..|..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 45789999999999999999874
No 452
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.99 E-value=0.0089 Score=59.59 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
+.+-.++.|.-|||||||+|+|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3456789999999999999999843
No 453
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.96 E-value=0.0029 Score=63.77 Aligned_cols=86 Identities=16% Similarity=0.221 Sum_probs=59.9
Q ss_pred cccEEeeeeEEEEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCc---cccccCCCCchHHHHHHHHH---
Q 010985 127 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT--- 200 (496)
Q Consensus 127 ~G~T~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~---~e~~~~~~~~t~e~~~~~~~--- 200 (496)
+-.|.-.....|..++..+.++|.+|++...+.+......++++|+|||.++-. .|..- .....+.+.+...
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~--~nrl~esl~~f~~l~~ 245 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDES--TNRMQESLNLFESICN 245 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCc--chHHHHHHHHHHHHHc
Confidence 344555566678889999999999999999999999999999999999998621 11000 0112222222221
Q ss_pred ----cCCceEEEEEeeccC
Q 010985 201 ----LGVTKLLLVVNKMDD 215 (496)
Q Consensus 201 ----~~~~~~ivviNK~D~ 215 (496)
.+.| +++++||.|+
T Consensus 246 ~~~~~~~p-iil~~NK~D~ 263 (342)
T smart00275 246 SRWFANTS-IILFLNKIDL 263 (342)
T ss_pred CccccCCc-EEEEEecHHh
Confidence 2456 9999999997
No 454
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.95 E-value=0.002 Score=64.26 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=59.4
Q ss_pred ccEEeeeeEEEEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCc---cccccCCCCchHHHHHHHHH----
Q 010985 128 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT---- 200 (496)
Q Consensus 128 G~T~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~---~e~~~~~~~~t~e~~~~~~~---- 200 (496)
..|.......|..++..+.++|++|++...+.+......++++++|||.++-. .|... .....+.+.+...
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~--~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES--TNRMQESLNLFDSICNS 223 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc--chHHHHHHHHHHHHHhC
Confidence 34555556678888999999999999999999999999999999999988631 00000 0112222222222
Q ss_pred ---cCCceEEEEEeeccC
Q 010985 201 ---LGVTKLLLVVNKMDD 215 (496)
Q Consensus 201 ---~~~~~~ivviNK~D~ 215 (496)
.+.| +++++||.|+
T Consensus 224 ~~~~~~p-ill~~NK~D~ 240 (317)
T cd00066 224 RWFANTS-IILFLNKKDL 240 (317)
T ss_pred ccccCCC-EEEEccChHH
Confidence 2566 9999999997
No 455
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.94 E-value=0.0022 Score=59.41 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=39.0
Q ss_pred CCeEEEEEeCCCCccc------HhHHhhccccCCEEEEE---EeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 010985 141 ETTRFTILDAPGHKSY------VPNMISGASQADIGVLV---ISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 211 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~------~~~~~~~~~~aD~~ilV---vda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN 211 (496)
....+.++|+||+-++ ..+.++.+...|+-+.+ +|+.--.-.+.|- ....-.+.-+..+..|| |=|+.
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melph-VNvlS 171 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPH-VNVLS 171 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccc-hhhhh
Confidence 3567889999995443 66666666666655544 4543210000000 00111122233456786 46999
Q ss_pred eccCC
Q 010985 212 KMDDH 216 (496)
Q Consensus 212 K~D~~ 216 (496)
|+|+.
T Consensus 172 K~Dl~ 176 (290)
T KOG1533|consen 172 KADLL 176 (290)
T ss_pred HhHHH
Confidence 99983
No 456
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.94 E-value=0.0031 Score=57.42 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCCcccHhHH-----hhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 142 TTRFTILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~-----~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
.....||-+.|..+-..-+ .......+.++.||||..-.. ...... .....+..-. ++++||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~-------~~~~~~-~~~~Qi~~AD-vIvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDE-------LENIPE-LLREQIAFAD-VIVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGG-------HTTHCH-HHHHHHCT-S-EEEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccc-------cccchh-hhhhcchhcC-EEEEecccc
Confidence 3567889999955432221 222345689999999965210 111112 2223333333 479999999
No 457
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.92 E-value=0.013 Score=63.11 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=59.9
Q ss_pred EEEc-cCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEEcCccccccCCCCeEEEEeccCC-ccCcceeeEEec
Q 010985 301 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSS 375 (496)
Q Consensus 301 ~~~~-~~G~v~~g~v~~G~l~~g~~v~~~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~-~~~i~~G~vl~~ 375 (496)
.+|+ ..+.++..+|..|.|+.|..|. .+.+ .-.+|.||+.++++|.+|..|+-|++.+.+.. ..+++.||+|..
T Consensus 473 ~vf~~~~~~i~G~~V~~G~i~~~~~v~-r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSKPAIVGVEVLTGVIRQGYPLM-KDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCCCeEEEEEEecCEEecCCeEE-ecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 4563 3478888999999999999874 4433 45789999999999999999999999998742 257899999865
No 458
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.73 E-value=0.0037 Score=44.78 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=26.0
Q ss_pred HHhhccc-cCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEeecc
Q 010985 159 NMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMD 214 (496)
Q Consensus 159 ~~~~~~~-~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-~~~~~ivviNK~D 214 (496)
.++.+++ .++++++++|.+... |+.+..|..-.-.+-... +.| +++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~C---Gysie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQC---GYSIEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TT---SS-HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCC---CCCHHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 4556665 679999999998752 232222221111222234 566 999999998
No 459
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.71 E-value=0.011 Score=60.79 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=25.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCc
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQV 92 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i 92 (496)
.-..+|+|+|++++|||||+++|....|..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 356789999999999999999998776654
No 460
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.69 E-value=0.04 Score=55.79 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=24.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
+....+=|+++|++-.||||++.++....
T Consensus 13 RT~GdIYiGVVGPVRTGKSTFIKRFMel~ 41 (492)
T PF09547_consen 13 RTGGDIYIGVVGPVRTGKSTFIKRFMELL 41 (492)
T ss_pred hcCCceEEEeecCcccCchhHHHHHHHHh
Confidence 45566889999999999999999997443
No 461
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=0.01 Score=56.28 Aligned_cols=135 Identities=19% Similarity=0.306 Sum_probs=77.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhh-hcccEEeeeeEEEEeCC-
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER-IKGKTVEVGRAHFETET- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~-~~G~T~~~~~~~~~~~~- 142 (496)
..||..+|.+|-|||||++.|.... ++..+... .+++-.....+.+..++
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~----------------------------f~~~p~~H~~~~V~L~~~TyelqEsnv 93 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTK----------------------------FESEPSTHTLPNVKLQANTYELQESNV 93 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccc----------------------------cCCCCCccCCCCceeecchhhhhhcCe
Confidence 4799999999999999999985211 11111000 13333333323333333
Q ss_pred -eEEEEEeCCCCcc-------------c--------------HhHHhhcc--ccCCEEEEEEeCCCCccccccCCCCchH
Q 010985 143 -TRFTILDAPGHKS-------------Y--------------VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTR 192 (496)
Q Consensus 143 -~~i~liDtpG~~~-------------~--------------~~~~~~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~ 192 (496)
.+++++||.|..| | +++++... +...++++.|.++-.. .-.
T Consensus 94 rlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~---------LKs 164 (406)
T KOG3859|consen 94 RLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHS---------LKS 164 (406)
T ss_pred eEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcc---------hhH
Confidence 4589999999432 2 33444333 2457888888876421 111
Q ss_pred HHHHHHHHc--CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCC
Q 010985 193 EHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 241 (496)
Q Consensus 193 e~~~~~~~~--~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~ 241 (496)
-.+.-++.+ .+. +|-+|-|.|. .++..+...+..+..-|...|.
T Consensus 165 lDLvtmk~LdskVN-IIPvIAKaDt----isK~eL~~FK~kimsEL~sngv 210 (406)
T KOG3859|consen 165 LDLVTMKKLDSKVN-IIPVIAKADT----ISKEELKRFKIKIMSELVSNGV 210 (406)
T ss_pred HHHHHHHHHhhhhh-hHHHHHHhhh----hhHHHHHHHHHHHHHHHHhcCc
Confidence 122222333 334 7778999997 3566677777777766666554
No 462
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.66 E-value=0.0058 Score=63.67 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=80.4
Q ss_pred ccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeE
Q 010985 57 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 136 (496)
Q Consensus 57 ~~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~ 136 (496)
..++..++..+.-++|+.++|||.|++.+++.. +++. .........+++....
T Consensus 417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~--~~~~-------------------------~~~~~~~~~avn~v~~ 469 (625)
T KOG1707|consen 417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRS--MSDN-------------------------NTGTTKPRYAVNSVEV 469 (625)
T ss_pred ccccccceeeeEEEEcCCcCchHHHHHHHhccc--cccc-------------------------cccCCCCceeeeeeee
Confidence 344567778899999999999999999986321 1110 0011112333433333
Q ss_pred EEEeCCeEEEEEeCCCC-cccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEeecc
Q 010985 137 HFETETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMD 214 (496)
Q Consensus 137 ~~~~~~~~i~liDtpG~-~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~~~~~~ivviNK~D 214 (496)
. -..+.+.|-|.+-. .++...- -..||+++++.|.+.+.. | ....+.+..-.. ..+| ++.|..|+|
T Consensus 470 ~--g~~k~LiL~ei~~~~~~~l~~k---e~~cDv~~~~YDsS~p~s---f---~~~a~v~~~~~~~~~~P-c~~va~K~d 537 (625)
T KOG1707|consen 470 K--GQQKYLILREIGEDDQDFLTSK---EAACDVACLVYDSSNPRS---F---EYLAEVYNKYFDLYKIP-CLMVATKAD 537 (625)
T ss_pred c--cccceEEEeecCccccccccCc---cceeeeEEEecccCCchH---H---HHHHHHHHHhhhccCCc-eEEEeeccc
Confidence 2 22344555555542 1122111 168999999999986521 1 112222222222 3567 889999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 256 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~ 256 (496)
+.... ++..-+..++..++++. +-+++|..+
T Consensus 538 lDe~~------Q~~~iqpde~~~~~~i~-----~P~~~S~~~ 568 (625)
T KOG1707|consen 538 LDEVP------QRYSIQPDEFCRQLGLP-----PPIHISSKT 568 (625)
T ss_pred cchhh------hccCCChHHHHHhcCCC-----CCeeeccCC
Confidence 83221 11112224555666654 345666653
No 463
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.63 E-value=0.004 Score=72.80 Aligned_cols=25 Identities=20% Similarity=0.017 Sum_probs=20.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHH
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQI 85 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~L 85 (496)
.....+=..|+|+++||||||+..-
T Consensus 107 ~lY~LPWYlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 107 YLYDLPWYLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred hhhcCCCEEEECCCCCchhHHHHhC
Confidence 3455677899999999999998643
No 464
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.62 E-value=0.025 Score=56.95 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
.+-..+.|--|||||||+++|+..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 455788999999999999999853
No 465
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.61 E-value=0.02 Score=45.48 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=47.0
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEE
Q 010985 68 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 147 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~l 147 (496)
+++.|..|+||||+...|..... ..|...-... .+.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~-----------------------------------~~g~~v~~~~--------d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA-----------------------------------KRGKRVLLID--------DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-----------------------------------HCCCeEEEEC--------CEEE
Confidence 67889999999999998853221 0122111111 7899
Q ss_pred EeCCCCcccHhH-HhhccccCCEEEEEEeCCCCc
Q 010985 148 LDAPGHKSYVPN-MISGASQADIGVLVISARKGE 180 (496)
Q Consensus 148 iDtpG~~~~~~~-~~~~~~~aD~~ilVvda~~g~ 180 (496)
+|+|+....... ....+..+|.+++++++....
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 999996554331 245567889999999988653
No 466
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=96.59 E-value=0.014 Score=47.01 Aligned_cols=72 Identities=28% Similarity=0.403 Sum_probs=54.3
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc-CccccccCCCCeEEEEeccCCccCcceeeEEe
Q 010985 298 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 374 (496)
Q Consensus 298 ~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 374 (496)
.|.++. ++.|.+++..|.+|+|++||.+..+.. ..+|++|... .+++++|.||+.|.+ .|.+.. -..|+.+.
T Consensus 4 ~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~--~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~~~-P~aGd~~~ 78 (95)
T cd03702 4 VVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTT--YGKVRAMFDENGKRVKEAGPSTPVEI--LGLKGV-PQAGDKFL 78 (95)
T ss_pred EEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccc--ccEEEEEECCCCCCCCEECCCCcEEE--cCCCCC-CCCCCEEE
Confidence 344444 578999999999999999999999654 4599999886 589999999999986 343321 13455554
No 467
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.016 Score=50.84 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
+..++|.|.|+||+|||||+..+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHH
Confidence 446899999999999999998885
No 468
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.50 E-value=0.037 Score=55.09 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=49.3
Q ss_pred CeEEEEEeCCCCcccHhHHh--------hccccCCEEEEEEeCCCCccccccCCCCchHH-H-HHHHHHcCCceEEEEEe
Q 010985 142 TTRFTILDAPGHKSYVPNMI--------SGASQADIGVLVISARKGEFETGFEKGGQTRE-H-VMLAKTLGVTKLLLVVN 211 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~--------~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e-~-~~~~~~~~~~~~ivviN 211 (496)
+....+|-|-|..+=.+-+. .....-|.+|-||||.... .... . -.....+..-. ++++|
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~---------~~~~~~~~~~~~Qia~AD-~ivlN 153 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFL---------EGLDAIAELAEDQLAFAD-VIVLN 153 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhh---------hhHHHHHHHHHHHHHhCc-EEEEe
Confidence 35578999999665422221 1223568899999998752 1111 0 11111222222 47999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG 254 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa 254 (496)
|.|+.. .+.. ..++..+..++ +..+++..|.
T Consensus 154 K~Dlv~----~~~l----~~l~~~l~~ln----p~A~i~~~~~ 184 (323)
T COG0523 154 KTDLVD----AEEL----EALEARLRKLN----PRARIIETSY 184 (323)
T ss_pred cccCCC----HHHH----HHHHHHHHHhC----CCCeEEEccc
Confidence 999932 2223 33344444442 3567888775
No 469
>PRK13695 putative NTPase; Provisional
Probab=96.42 E-value=0.029 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.+|++.|.+++|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998753
No 470
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.42 E-value=0.016 Score=47.43 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=27.1
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 179 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g 179 (496)
+.+.++|+|+..... ....+..+|.++++++++..
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 679999999965432 33667789999999998764
No 471
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.40 E-value=0.026 Score=46.44 Aligned_cols=74 Identities=22% Similarity=0.357 Sum_probs=55.5
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEEcCc-----------cccccCCCCeEEEEeccC
Q 010985 298 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDN-----------RVRHAGPGENLRIRLSGI 362 (496)
Q Consensus 298 ~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~--~~~~V~sI~~~~~-----------~v~~a~aG~~v~~~l~~~ 362 (496)
.|.++- ++.|+++..-|++|+|+.||.|.++... ...+|+++...+. +++++.|..-+-+...|+
T Consensus 4 tVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~gL 83 (110)
T cd03703 4 TVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPDL 83 (110)
T ss_pred EEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCCC
Confidence 455554 6899999999999999999999998765 3568999987643 788888777676666655
Q ss_pred CccCcceeeEE
Q 010985 363 EEEDILSGFVL 373 (496)
Q Consensus 363 ~~~~i~~G~vl 373 (496)
+. +-.|+-+
T Consensus 84 ~~--v~aG~~~ 92 (110)
T cd03703 84 EK--AIAGSPL 92 (110)
T ss_pred cc--ccCCCEE
Confidence 43 3456554
No 472
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.24 E-value=0.034 Score=44.87 Aligned_cols=58 Identities=22% Similarity=0.380 Sum_probs=47.5
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc-CccccccCCCCeEEE
Q 010985 298 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRI 357 (496)
Q Consensus 298 ~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~~ 357 (496)
.|.++- ++.|.+++..|.+|+|++||.+..+. ...+|+++... ++.+.+|.|++.|.+
T Consensus 4 ~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~--~~GkVr~~~d~~g~~v~~a~Ps~~v~i 64 (95)
T cd03701 4 TVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG--TYGKIRTMVDENGKALLEAGPSTPVEI 64 (95)
T ss_pred EEEEEEecCCCCeeEEEEEEcCeEecCCEEEECC--ccceEEEEECCCCCCccccCCCCCEEE
Confidence 344443 57899999999999999999999854 45689999875 678999999999853
No 473
>PRK01889 GTPase RsgA; Reviewed
Probab=96.15 E-value=0.0044 Score=62.90 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
++-.++++|.+|+|||||+|.|+..
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHh
Confidence 4568999999999999999999743
No 474
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.01 E-value=0.025 Score=47.34 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.4
Q ss_pred eEEEEEecCCCChHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQI 85 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~L 85 (496)
.+|+++|..++|||+|+.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~ 20 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARF 20 (124)
T ss_pred CEEEEECCCChhHHHHHHHH
Confidence 37899999999999999887
No 475
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.00 E-value=0.019 Score=51.95 Aligned_cols=40 Identities=25% Similarity=0.149 Sum_probs=27.6
Q ss_pred CEEEEEEeCCCCccccccCCCCchHHHHHH--HHHcCCceEEEEEeeccC
Q 010985 168 DIGVLVISARKGEFETGFEKGGQTREHVML--AKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 168 D~~ilVvda~~g~~e~~~~~~~~t~e~~~~--~~~~~~~~~ivviNK~D~ 215 (496)
|++++|+||..+.. ....+.... +...+.| +|+|+||+|+
T Consensus 1 DvVl~VvDar~p~~-------~~~~~i~~~~~l~~~~kp-~IlVlNK~DL 42 (172)
T cd04178 1 DVILEVLDARDPLG-------CRCPQVEEAVLQAGGNKK-LVLVLNKIDL 42 (172)
T ss_pred CEEEEEEECCCCCC-------CCCHHHHHHHHhccCCCC-EEEEEehhhc
Confidence 88999999988632 233333344 2234566 8899999999
No 476
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.93 E-value=0.024 Score=51.06 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
....++|+|..|||||||+.+|+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li 27 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLI 27 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHH
Confidence 34578999999999999999996
No 477
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=95.79 E-value=0.073 Score=51.29 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=23.0
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHH
Q 010985 59 EGNNKRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 59 ~~~~~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.....+.+--.|.|.-|||||||+|.++
T Consensus 51 ~~~~~rIPvtIITGyLGaGKtTLLn~Il 78 (391)
T KOG2743|consen 51 SSLGARIPVTIITGYLGAGKTTLLNYIL 78 (391)
T ss_pred cCCCCccceEEEEecccCChHHHHHHHH
Confidence 3345566777899999999999999997
No 478
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.69 E-value=0.012 Score=43.26 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 010985 67 NVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
...|.|+.+||||||+.++.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 479
>PRK14845 translation initiation factor IF-2; Provisional
Probab=95.68 E-value=0.21 Score=57.18 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=59.2
Q ss_pred EEEc-cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCC-ccCcceeeEEec
Q 010985 301 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSS 375 (496)
Q Consensus 301 ~~~~-~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~-~~~i~~G~vl~~ 375 (496)
.+|+ ..+.++..+|..|+|+.|..|.-..+....+|.||+.++++|++|..|+-|++.+.+.. ..++..||+|..
T Consensus 931 ~vF~~~~~~IaG~~V~~G~i~~~~~l~r~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~ 1007 (1049)
T PRK14845 931 CIFRRSNPAIVGVEVLEGTLRVGVTLIKEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYV 1007 (1049)
T ss_pred eEEeCCCCeEEEEEEeeCEEecCcEEEecCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 5663 34788999999999999987743222344789999999999999999999999998743 246888888864
No 480
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.64 E-value=0.012 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
.|+|.|.++|||||+.+.|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999975544
No 481
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.017 Score=58.91 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=75.8
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHH------------hCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhh
Q 010985 58 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFL------------SGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 125 (496)
Q Consensus 58 ~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~------------~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~ 125 (496)
..+..++...|+++|-.|+||||-+..+.|= |..+.++.++.+..+++. ++.+++..-+--
T Consensus 371 sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~r-------l~~l~~~~v~lf 443 (587)
T KOG0781|consen 371 SARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVER-------LSALHGTMVELF 443 (587)
T ss_pred HHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHH-------HHHhccchhHHH
Confidence 3445568899999999999999998877542 222333333333333322 111222111111
Q ss_pred hcccEEeeee------EEEEeCCeEEEEEeCCCCcccHhHHhhc------cccCCEEEEEEeCCCCccccccCCCCchHH
Q 010985 126 IKGKTVEVGR------AHFETETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTRE 193 (496)
Q Consensus 126 ~~G~T~~~~~------~~~~~~~~~i~liDtpG~~~~~~~~~~~------~~~aD~~ilVvda~~g~~e~~~~~~~~t~e 193 (496)
+.|.--|... .+....++.+.||||+|...--....+. +..+|.+++|=.|--|.- ...|.+.
T Consensus 444 ekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~d-----sv~q~~~ 518 (587)
T KOG0781|consen 444 EKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGND-----SVDQLKK 518 (587)
T ss_pred hhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcH-----HHHHHHH
Confidence 2222222111 0122357889999999954432222222 468999999977655410 0012222
Q ss_pred HHHHHHHcCCceE--EEEEeeccC
Q 010985 194 HVMLAKTLGVTKL--LLVVNKMDD 215 (496)
Q Consensus 194 ~~~~~~~~~~~~~--ivviNK~D~ 215 (496)
.-..+.....|+. -++++|.|.
T Consensus 519 fn~al~~~~~~r~id~~~ltk~dt 542 (587)
T KOG0781|consen 519 FNRALADHSTPRLIDGILLTKFDT 542 (587)
T ss_pred HHHHHhcCCCccccceEEEEeccc
Confidence 2222222232332 258999997
No 482
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.023 Score=65.11 Aligned_cols=24 Identities=21% Similarity=0.005 Sum_probs=18.8
Q ss_pred cCCcceeEEEEEecCCCChHHHHH
Q 010985 60 GNNKRHLNVVFIGHVDAGKSTTGG 83 (496)
Q Consensus 60 ~~~~~~~~i~i~G~~~aGKSTL~~ 83 (496)
+...+.+=-.|+|++|+||||++.
T Consensus 120 r~lyeLPWy~viG~pgsGKTtal~ 143 (1188)
T COG3523 120 RYLYELPWYMVIGPPGSGKTTALL 143 (1188)
T ss_pred chhhcCCceEEecCCCCCcchHHh
Confidence 344456667899999999999973
No 483
>PRK04004 translation initiation factor IF-2; Validated
Probab=95.61 E-value=0.16 Score=55.07 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=58.3
Q ss_pred EEEc-cCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEEcCccccccCCCCeEEEEeccCC-ccCcceeeEEec
Q 010985 301 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSS 375 (496)
Q Consensus 301 ~~~~-~~G~v~~g~v~~G~l~~g~~v~~~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~-~~~i~~G~vl~~ 375 (496)
.+|+ ..+.++..+|..|.|+.|..|. .+.+ ...+|.||++++++|.++..|+-|++.+.+.. ..++..||+|-.
T Consensus 475 ~vf~~~~~~IaGc~V~~G~i~~~~~v~-r~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSDPAIVGVEVLGGTIKPGVPLI-KEDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCCCeEEEEEEEeCEEecCCEEE-EECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 4663 3478888999999999999854 3333 34789999999999999999999999998642 146888888754
No 484
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.60 E-value=0.065 Score=53.66 Aligned_cols=75 Identities=24% Similarity=0.220 Sum_probs=49.3
Q ss_pred EEEeCCCCc-ccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH-HHcCCceEEEEEeeccCCCCCccHH
Q 010985 146 TILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 146 ~liDtpG~~-~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~-~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.-.|-++++ .|.+....-+..+|++|-|+||.++.- ....+.-... .+.|-+++|+|+||+|+. +.+
T Consensus 125 ~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlg-------tR~~~vE~~V~~~~gnKkLILVLNK~DLV----PrE 193 (435)
T KOG2484|consen 125 NALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLG-------TRCPEVEEAVLQAHGNKKLILVLNKIDLV----PRE 193 (435)
T ss_pred hhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCC-------CCChhHHHHHHhccCCceEEEEeehhccC----CHH
Confidence 345555554 477777788889999999999999852 2222222222 244557799999999993 344
Q ss_pred HHHHHHHH
Q 010985 224 RYDEIESK 231 (496)
Q Consensus 224 ~~~~i~~~ 231 (496)
..++....
T Consensus 194 v~e~Wl~Y 201 (435)
T KOG2484|consen 194 VVEKWLVY 201 (435)
T ss_pred HHHHHHHH
Confidence 55554443
No 485
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.12 Score=55.45 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=48.9
Q ss_pred EEccCCeEEE-EEEEEeeeecCCEEEEecCC--ceEEEEEEEEcCccccccCCCCeEEEEecc
Q 010985 302 KFKDMGTVVM-GKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSG 361 (496)
Q Consensus 302 ~~~~~G~v~~-g~v~~G~l~~g~~v~~~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~ 361 (496)
+|..++.++. ..|..|+|+.|..|.+..-. .-.+|.||+++|++|+.|.-||-|++.+.+
T Consensus 945 ifN~RdPiv~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~ 1007 (1064)
T KOG1144|consen 945 IFNKRDPIVLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEA 1007 (1064)
T ss_pred hccCCCCeEEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEec
Confidence 5666776654 59999999999999874322 346899999999999999999999988864
No 486
>PHA00729 NTP-binding motif containing protein
Probab=95.58 E-value=0.013 Score=54.90 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
...+|+|.|.||+|||||..+|....
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34599999999999999999997543
No 487
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.42 E-value=0.038 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..+|.|.|.+|||||||+++|+.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~ 166 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 488
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.38 E-value=0.2 Score=45.42 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++++|+.|||||||++.|.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILA 46 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHH
Confidence 456789999999999999999884
No 489
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.33 E-value=0.014 Score=52.95 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=22.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
..++-.++++|+.|+|||||++.++..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 456678999999999999999988643
No 490
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.14 E-value=0.048 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
...+|.|+|.+|||||||+++|+.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~ 154 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLA 154 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999963
No 491
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.10 E-value=0.015 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.8
Q ss_pred cceeEEEEEecCCCChHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQI 85 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~L 85 (496)
+++=-|+|+|+.|||||||+|.|
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 34557899999999999999977
No 492
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.06 E-value=0.019 Score=43.31 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=17.7
Q ss_pred EEEEecCCCChHHHHHHHH
Q 010985 68 VVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll 86 (496)
|++.|.+++||||+.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999994
No 493
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.03 E-value=0.028 Score=54.75 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+..-+|+|.|.+||||||++++|+.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhh
Confidence 3468999999999999999999963
No 494
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.98 E-value=0.08 Score=47.56 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=48.6
Q ss_pred CCeEEEEEeCCCCcccHhHHhhc--cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~--~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
.++.+.++|||+.-. ...... +..+|.+++|+.+..... ..+.+.+..+...+.+.+-+++|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVAL-------DDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhH-------HHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 578899999999643 222222 367899999998876432 356677788888898877789999985
No 495
>PRK07261 topology modulation protein; Provisional
Probab=94.98 E-value=0.023 Score=51.37 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 010985 67 NVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+|+|+|.+|||||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999853
No 496
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.94 E-value=0.023 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHHHhC
Q 010985 68 VVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
|.++|+|+||||||...|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999975544
No 497
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.90 E-value=0.15 Score=45.15 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=18.3
Q ss_pred EEEEecCCCChHHHHHHHHH
Q 010985 68 VVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~ 87 (496)
++++|..|+|||||+.+|+.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999974
No 498
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.90 E-value=0.045 Score=48.75 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.2
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll 86 (496)
..++++|..|+|||||+.+|.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~ 22 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLI 22 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999996
No 499
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.87 E-value=0.019 Score=54.21 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=19.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++=-|+|+|+.|+|||||++.+.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34568999999999999999884
No 500
>PRK08118 topology modulation protein; Reviewed
Probab=94.86 E-value=0.026 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
.+|.|+|++|||||||...|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999864443
Done!