Query 010985
Match_columns 496
No_of_seqs 429 out of 3850
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 18:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 2.1E-83 7.1E-88 666.0 51.6 426 61-491 13-439 (439)
2 1r5b_A Eukaryotic peptide chai 100.0 5.8E-79 2E-83 637.4 28.9 424 63-490 41-466 (467)
3 1f60_A Elongation factor EEF1A 100.0 5.7E-75 1.9E-79 605.8 44.7 424 62-492 4-442 (458)
4 3izq_1 HBS1P, elongation facto 100.0 1.5E-75 5.1E-80 627.6 39.2 424 62-491 164-611 (611)
5 3p26_A Elongation factor 1 alp 100.0 9.1E-75 3.1E-79 609.3 42.0 424 62-491 30-477 (483)
6 1jny_A EF-1-alpha, elongation 100.0 2.6E-74 9E-79 598.1 43.7 426 62-492 3-430 (435)
7 3mca_A HBS1, elongation factor 100.0 1.4E-73 4.7E-78 610.9 34.0 417 60-490 172-592 (592)
8 1zun_B Sulfate adenylate trans 100.0 1.3E-68 4.3E-73 555.6 42.4 408 62-488 21-434 (434)
9 1d2e_A Elongation factor TU (E 100.0 2.9E-61 1E-65 494.6 38.1 378 63-492 1-388 (397)
10 2c78_A Elongation factor TU-A; 100.0 1E-60 3.6E-65 492.2 37.4 384 61-490 7-404 (405)
11 3avx_A Elongation factor TS, e 100.0 8.2E-57 2.8E-61 495.8 36.6 380 61-493 292-680 (1289)
12 1wb1_A Translation elongation 100.0 5.4E-58 1.8E-62 480.1 15.7 369 61-490 15-394 (482)
13 2elf_A Protein translation elo 100.0 1.6E-54 5.6E-59 438.6 32.0 335 67-486 23-369 (370)
14 1kk1_A EIF2gamma; initiation o 100.0 9.3E-53 3.2E-57 433.6 38.9 344 61-487 6-409 (410)
15 1s0u_A EIF-2-gamma, translatio 100.0 9.7E-53 3.3E-57 433.0 34.1 343 62-487 5-407 (408)
16 3sjy_A Translation initiation 100.0 1.4E-49 4.7E-54 408.9 35.5 356 61-487 4-402 (403)
17 3e1y_E Eukaryotic peptide chai 100.0 1.5E-42 5.2E-47 321.4 18.5 199 291-492 3-202 (204)
18 3vqt_A RF-3, peptide chain rel 100.0 4.8E-37 1.6E-41 325.3 25.8 277 64-379 30-402 (548)
19 2ywe_A GTP-binding protein LEP 100.0 3E-36 1E-40 320.0 26.4 268 63-379 4-282 (600)
20 3cb4_D GTP-binding protein LEP 100.0 4.3E-35 1.5E-39 311.8 27.1 267 64-379 3-280 (599)
21 4fn5_A EF-G 1, elongation fact 100.0 2.9E-34 1E-38 314.0 21.1 275 62-379 10-406 (709)
22 3j25_A Tetracycline resistance 100.0 1.6E-36 5.5E-41 327.6 2.4 274 64-378 1-331 (638)
23 3tr5_A RF-3, peptide chain rel 100.0 1.6E-33 5.5E-38 296.7 25.0 279 64-377 12-382 (528)
24 2rdo_7 EF-G, elongation factor 100.0 5.5E-32 1.9E-36 294.8 28.0 274 62-378 7-402 (704)
25 2h5e_A Peptide chain release f 100.0 2.5E-32 8.7E-37 287.9 24.1 275 63-377 11-383 (529)
26 3izy_P Translation initiation 100.0 8E-34 2.7E-38 297.8 5.9 255 64-379 3-261 (537)
27 1dar_A EF-G, elongation factor 100.0 4.7E-31 1.6E-35 287.1 27.8 275 62-379 9-395 (691)
28 1zo1_I IF2, translation initia 100.0 1.5E-32 5.2E-37 285.8 10.2 247 64-377 3-258 (501)
29 2xex_A Elongation factor G; GT 100.0 2E-30 6.9E-35 282.2 25.5 274 62-378 7-394 (693)
30 2dy1_A Elongation factor G; tr 100.0 2.5E-30 8.4E-35 280.6 22.7 272 62-379 6-368 (665)
31 1g7s_A Translation initiation 100.0 2.9E-30 1E-34 275.0 20.9 261 64-378 4-329 (594)
32 1n0u_A EF-2, elongation factor 100.0 5.1E-27 1.7E-31 260.4 24.1 288 63-377 17-473 (842)
33 3gee_A MNME, tRNA modification 99.9 6.4E-24 2.2E-28 220.8 13.2 210 3-265 172-390 (476)
34 3geh_A MNME, tRNA modification 99.9 2.9E-23 9.9E-28 215.1 5.8 205 3-265 164-376 (462)
35 1xzp_A Probable tRNA modificat 99.9 1E-22 3.6E-27 211.9 5.9 205 3-265 184-397 (482)
36 2hjg_A GTP-binding protein ENG 99.8 2.7E-21 9.3E-26 200.3 12.2 158 63-265 173-341 (436)
37 4dcu_A GTP-binding protein ENG 99.8 1.6E-20 5.3E-25 195.7 12.9 160 61-265 191-361 (456)
38 2lkc_A Translation initiation 99.8 1.7E-20 6E-25 169.2 9.9 156 62-265 5-163 (178)
39 3iev_A GTP-binding protein ERA 99.8 1.3E-19 4.6E-24 178.9 14.1 155 62-264 7-173 (308)
40 1wf3_A GTP-binding protein; GT 99.8 2E-19 6.7E-24 176.8 14.9 149 64-264 6-164 (301)
41 4dhe_A Probable GTP-binding pr 99.8 9.4E-20 3.2E-24 171.0 12.0 159 63-264 27-202 (223)
42 3cph_A RAS-related protein SEC 99.8 6.3E-19 2.2E-23 163.9 13.4 165 50-265 5-174 (213)
43 2dyk_A GTP-binding protein; GT 99.8 9.7E-19 3.3E-23 154.8 13.1 144 66-263 2-152 (161)
44 3i8s_A Ferrous iron transport 99.8 3E-19 1E-23 173.4 10.2 147 64-264 2-160 (274)
45 1ega_A Protein (GTP-binding pr 99.8 3.5E-19 1.2E-23 175.3 10.7 151 64-264 7-166 (301)
46 1mky_A Probable GTP-binding pr 99.8 2.2E-18 7.6E-23 178.5 16.7 147 66-265 2-158 (439)
47 3iby_A Ferrous iron transport 99.8 3.6E-19 1.2E-23 171.0 9.5 144 66-263 2-157 (256)
48 2hxs_A RAB-26, RAS-related pro 99.8 4E-18 1.4E-22 153.6 15.7 152 63-264 4-164 (178)
49 1upt_A ARL1, ADP-ribosylation 99.8 4.6E-18 1.6E-22 152.0 14.3 155 61-265 3-161 (171)
50 3pqc_A Probable GTP-binding pr 99.8 2.7E-18 9.3E-23 157.0 12.6 152 63-264 21-185 (195)
51 2g6b_A RAS-related protein RAB 99.8 8.2E-18 2.8E-22 151.8 15.2 154 62-265 7-166 (180)
52 2fg5_A RAB-22B, RAS-related pr 99.8 5.3E-18 1.8E-22 155.4 14.1 153 62-263 20-176 (192)
53 2gj8_A MNME, tRNA modification 99.8 1.4E-18 4.9E-23 156.5 9.6 145 63-264 2-157 (172)
54 1g16_A RAS-related protein SEC 99.8 4.6E-18 1.6E-22 151.8 12.8 150 65-265 3-157 (170)
55 1mky_A Probable GTP-binding pr 99.8 2.6E-18 8.8E-23 178.1 12.6 158 63-265 178-347 (439)
56 3a1s_A Iron(II) transport prot 99.8 2.4E-18 8.3E-23 165.4 11.5 149 63-265 3-159 (258)
57 3tw8_B RAS-related protein RAB 99.8 6.3E-18 2.2E-22 152.5 13.6 153 62-265 6-163 (181)
58 1wms_A RAB-9, RAB9, RAS-relate 99.8 1E-17 3.4E-22 150.8 14.8 154 62-265 4-166 (177)
59 2fu5_C RAS-related protein RAB 99.8 4.7E-18 1.6E-22 154.1 12.5 152 63-265 6-163 (183)
60 3clv_A RAB5 protein, putative; 99.8 7.6E-18 2.6E-22 154.9 13.9 103 143-265 93-196 (208)
61 2h57_A ADP-ribosylation factor 99.7 3.5E-18 1.2E-22 156.2 11.2 157 61-265 17-179 (190)
62 4dsu_A GTPase KRAS, isoform 2B 99.7 4.3E-18 1.5E-22 154.8 11.7 151 63-265 2-158 (189)
63 1svi_A GTP-binding protein YSX 99.7 5.7E-18 2E-22 155.1 12.6 153 63-264 21-186 (195)
64 4bas_A ADP-ribosylation factor 99.7 1.1E-17 3.9E-22 153.6 14.3 157 60-265 12-181 (199)
65 3k53_A Ferrous iron transport 99.7 1.9E-18 6.5E-23 167.6 9.6 148 64-265 2-158 (271)
66 1zj6_A ADP-ribosylation factor 99.7 1.2E-17 3.9E-22 152.3 14.2 152 63-264 14-169 (187)
67 2bme_A RAB4A, RAS-related prot 99.7 1E-17 3.5E-22 152.2 13.7 152 63-265 8-165 (186)
68 2wji_A Ferrous iron transport 99.7 3.7E-18 1.3E-22 152.5 10.2 145 65-264 3-156 (165)
69 2hjg_A GTP-binding protein ENG 99.7 1.3E-18 4.4E-23 180.2 8.2 145 66-264 4-156 (436)
70 3tkl_A RAS-related protein RAB 99.7 9.3E-18 3.2E-22 153.7 13.1 152 63-265 14-171 (196)
71 2gf9_A RAS-related protein RAB 99.7 1.5E-17 5E-22 151.9 14.1 155 62-265 19-177 (189)
72 2efe_B Small GTP-binding prote 99.7 2.4E-17 8.4E-22 148.8 15.5 151 62-263 9-165 (181)
73 1r8s_A ADP-ribosylation factor 99.7 2.3E-17 7.9E-22 146.5 15.0 149 66-264 1-153 (164)
74 1kao_A RAP2A; GTP-binding prot 99.7 7.5E-18 2.5E-22 149.6 11.8 150 64-265 2-158 (167)
75 1ek0_A Protein (GTP-binding pr 99.7 1.1E-17 3.7E-22 149.2 12.7 155 64-263 2-159 (170)
76 2p5s_A RAS and EF-hand domain 99.7 6.3E-18 2.2E-22 155.8 11.3 161 61-264 24-188 (199)
77 3qq5_A Small GTP-binding prote 99.7 2.2E-18 7.4E-23 176.3 8.7 148 63-264 32-187 (423)
78 2nzj_A GTP-binding protein REM 99.7 1.4E-17 4.7E-22 149.5 12.8 152 64-265 3-161 (175)
79 1ksh_A ARF-like protein 2; sma 99.7 6.9E-18 2.4E-22 153.5 10.9 153 63-265 16-172 (186)
80 1z0j_A RAB-22, RAS-related pro 99.7 9.9E-18 3.4E-22 149.6 11.7 152 63-263 4-159 (170)
81 1zd9_A ADP-ribosylation factor 99.7 1.2E-17 4.2E-22 152.4 12.5 156 59-263 16-175 (188)
82 1vg8_A RAS-related protein RAB 99.7 1.4E-17 4.7E-22 154.1 12.9 154 62-265 5-167 (207)
83 1r2q_A RAS-related protein RAB 99.7 2.7E-17 9.1E-22 146.6 14.2 152 63-263 4-159 (170)
84 2il1_A RAB12; G-protein, GDP, 99.7 1E-17 3.5E-22 153.5 11.7 155 61-265 22-182 (192)
85 1z0f_A RAB14, member RAS oncog 99.7 5.5E-18 1.9E-22 152.6 9.7 154 62-264 12-169 (179)
86 2hup_A RAS-related protein RAB 99.7 3.7E-17 1.3E-21 151.1 15.3 154 62-265 26-185 (201)
87 3bc1_A RAS-related protein RAB 99.7 4E-17 1.4E-21 148.9 15.4 153 62-265 8-177 (195)
88 2b6h_A ADP-ribosylation factor 99.7 2.5E-17 8.6E-22 151.0 14.0 153 62-264 26-182 (192)
89 2y8e_A RAB-protein 6, GH09086P 99.7 1.7E-17 5.7E-22 149.4 12.6 150 63-263 12-167 (179)
90 4gzl_A RAS-related C3 botulinu 99.7 2.8E-17 9.5E-22 152.2 14.3 154 63-263 28-195 (204)
91 1m2o_B GTP-binding protein SAR 99.7 3.6E-17 1.2E-21 149.7 14.8 152 63-263 21-182 (190)
92 2h17_A ADP-ribosylation factor 99.7 1.8E-17 6E-22 150.3 12.3 154 60-263 16-173 (181)
93 2ew1_A RAS-related protein RAB 99.7 2.8E-17 9.5E-22 152.0 13.9 152 63-265 24-181 (201)
94 1x3s_A RAS-related protein RAB 99.7 1.4E-17 4.9E-22 152.3 11.7 154 63-265 13-170 (195)
95 3t1o_A Gliding protein MGLA; G 99.7 1.1E-17 3.8E-22 153.1 10.9 160 62-265 11-184 (198)
96 2ce2_X GTPase HRAS; signaling 99.7 4.4E-17 1.5E-21 144.3 14.5 148 65-264 3-156 (166)
97 2oil_A CATX-8, RAS-related pro 99.7 1.9E-17 6.5E-22 151.5 12.4 155 62-265 22-180 (193)
98 1zbd_A Rabphilin-3A; G protein 99.7 4.4E-17 1.5E-21 150.4 14.9 154 63-265 6-163 (203)
99 1z08_A RAS-related protein RAB 99.7 1.6E-17 5.5E-22 148.3 11.4 151 63-264 4-160 (170)
100 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.8E-17 9.4E-22 149.0 13.1 155 63-264 3-171 (186)
101 2xtp_A GTPase IMAP family memb 99.7 7.4E-18 2.5E-22 162.3 9.8 159 62-265 19-200 (260)
102 1z2a_A RAS-related protein RAB 99.7 2.8E-17 9.5E-22 146.3 12.7 150 64-264 4-158 (168)
103 3r7w_A Gtpase1, GTP-binding pr 99.7 2.5E-17 8.5E-22 162.5 13.6 162 64-263 2-171 (307)
104 3llu_A RAS-related GTP-binding 99.7 5.3E-17 1.8E-21 149.2 14.6 163 59-263 14-187 (196)
105 2x77_A ADP-ribosylation factor 99.7 1.3E-17 4.4E-22 152.1 10.3 153 63-265 20-176 (189)
106 3con_A GTPase NRAS; structural 99.7 6.6E-17 2.2E-21 147.5 15.0 152 62-265 18-175 (190)
107 2a5j_A RAS-related protein RAB 99.7 3.4E-17 1.2E-21 149.7 13.0 154 61-265 17-176 (191)
108 3t5g_A GTP-binding protein RHE 99.7 2.6E-17 9E-22 148.8 12.0 151 63-265 4-161 (181)
109 2fn4_A P23, RAS-related protei 99.7 2.7E-17 9.2E-22 148.3 12.0 152 62-265 6-164 (181)
110 3q72_A GTP-binding protein RAD 99.7 2.8E-17 9.4E-22 146.3 11.8 150 65-265 2-156 (166)
111 2bov_A RAla, RAS-related prote 99.7 9.6E-17 3.3E-21 148.2 15.8 153 61-265 10-169 (206)
112 1u8z_A RAS-related protein RAL 99.7 5.1E-17 1.7E-21 144.3 13.4 149 64-264 3-158 (168)
113 3dz8_A RAS-related protein RAB 99.7 1.8E-17 6E-22 151.7 10.4 155 62-265 20-178 (191)
114 2bcg_Y Protein YP2, GTP-bindin 99.7 2.4E-17 8.4E-22 152.5 11.5 152 63-265 6-163 (206)
115 2o52_A RAS-related protein RAB 99.7 1.6E-17 5.6E-22 153.3 10.2 152 63-265 23-180 (200)
116 1moz_A ARL1, ADP-ribosylation 99.7 2.8E-17 9.5E-22 148.8 11.5 153 63-265 16-172 (183)
117 1c1y_A RAS-related protein RAP 99.7 2.9E-17 9.9E-22 146.1 11.4 150 64-264 2-158 (167)
118 2erx_A GTP-binding protein DI- 99.7 1.1E-16 3.8E-21 142.9 15.2 150 64-263 2-157 (172)
119 1f6b_A SAR1; gtpases, N-termin 99.7 4.6E-17 1.6E-21 150.1 13.0 152 63-263 23-189 (198)
120 3b1v_A Ferrous iron uptake tra 99.7 7.2E-18 2.5E-22 163.2 7.8 145 65-264 3-155 (272)
121 3oes_A GTPase rhebl1; small GT 99.7 4.7E-17 1.6E-21 150.2 13.0 156 60-265 19-179 (201)
122 1ky3_A GTP-binding protein YPT 99.7 2.3E-17 7.9E-22 148.9 10.7 154 62-265 5-170 (182)
123 2wjg_A FEOB, ferrous iron tran 99.7 2.3E-17 7.8E-22 150.2 10.6 149 63-265 5-161 (188)
124 1fzq_A ADP-ribosylation factor 99.7 9.6E-17 3.3E-21 145.6 14.7 151 63-263 14-168 (181)
125 2fh5_B SR-beta, signal recogni 99.7 5.7E-17 1.9E-21 151.0 13.1 154 63-263 5-206 (214)
126 2f7s_A C25KG, RAS-related prot 99.7 6.2E-17 2.1E-21 151.0 13.3 148 63-265 23-191 (217)
127 2gf0_A GTP-binding protein DI- 99.7 1.5E-16 5.1E-21 146.0 15.5 152 63-264 6-162 (199)
128 2atx_A Small GTP binding prote 99.7 9.9E-17 3.4E-21 146.9 14.0 158 63-264 16-184 (194)
129 3cpj_B GTP-binding protein YPT 99.7 4E-17 1.4E-21 153.3 11.6 152 63-265 11-168 (223)
130 2a9k_A RAS-related protein RAL 99.7 8.1E-17 2.8E-21 145.9 13.1 152 62-265 15-173 (187)
131 3gj0_A GTP-binding nuclear pro 99.7 3E-17 1E-21 153.9 10.4 155 61-265 11-167 (221)
132 1z06_A RAS-related protein RAB 99.7 3.1E-17 1.1E-21 149.6 10.3 152 61-263 16-178 (189)
133 2qtf_A Protein HFLX, GTP-bindi 99.7 5.1E-17 1.7E-21 163.5 12.6 159 61-265 174-346 (364)
134 3kkq_A RAS-related protein M-R 99.7 9.2E-17 3.2E-21 145.5 13.2 153 61-265 14-174 (183)
135 3reg_A RHO-like small GTPase; 99.7 3E-16 1E-20 143.7 16.7 157 61-265 19-180 (194)
136 3q85_A GTP-binding protein REM 99.7 1.2E-16 4E-21 142.6 13.1 150 65-265 2-159 (169)
137 2qu8_A Putative nucleolar GTP- 99.7 2.7E-16 9.3E-21 148.1 16.2 159 63-265 27-197 (228)
138 3o47_A ADP-ribosylation factor 99.7 5.5E-17 1.9E-21 161.6 11.8 154 62-265 162-319 (329)
139 2q3h_A RAS homolog gene family 99.7 1.9E-16 6.7E-21 145.8 14.6 159 60-265 15-187 (201)
140 4dcu_A GTP-binding protein ENG 99.7 2E-17 7E-22 172.1 8.7 148 63-264 21-176 (456)
141 2fv8_A H6, RHO-related GTP-bin 99.7 2.4E-16 8.2E-21 146.1 15.0 158 64-265 24-192 (207)
142 2yc2_C IFT27, small RAB-relate 99.7 5.3E-17 1.8E-21 150.0 10.3 154 63-265 18-184 (208)
143 2gco_A H9, RHO-related GTP-bin 99.7 9.9E-17 3.4E-21 148.0 12.0 160 62-265 22-192 (201)
144 3bwd_D RAC-like GTP-binding pr 99.7 9.3E-17 3.2E-21 145.1 11.3 155 63-264 6-172 (182)
145 2j1l_A RHO-related GTP-binding 99.7 2.7E-16 9.1E-21 146.7 14.6 156 63-265 32-201 (214)
146 4djt_A GTP-binding nuclear pro 99.7 6E-17 2.1E-21 151.3 10.0 154 62-265 8-167 (218)
147 3lxw_A GTPase IMAP family memb 99.7 2.3E-16 8E-21 150.6 14.1 156 63-264 19-199 (247)
148 2j0v_A RAC-like GTP-binding pr 99.7 2.8E-16 9.4E-21 146.1 13.0 156 63-265 7-172 (212)
149 3q3j_B RHO-related GTP-binding 99.7 3.4E-16 1.2E-20 146.0 13.3 165 59-265 21-195 (214)
150 3lvq_E ARF-GAP with SH3 domain 99.7 3E-16 1E-20 165.3 14.1 154 62-265 319-476 (497)
151 2j69_A Bacterial dynamin-like 99.7 7.2E-18 2.5E-22 183.6 1.2 230 2-265 15-317 (695)
152 2atv_A RERG, RAS-like estrogen 99.7 3.6E-16 1.2E-20 143.5 11.8 150 63-265 26-183 (196)
153 3t5d_A Septin-7; GTP-binding p 99.6 5.4E-16 1.8E-20 150.5 12.0 159 65-264 8-195 (274)
154 3l0i_B RAS-related protein RAB 99.6 1.6E-17 5.5E-22 153.0 1.2 150 63-263 31-186 (199)
155 1m7b_A RND3/RHOE small GTP-bin 99.6 1.2E-15 4.1E-20 138.5 13.6 156 62-264 4-174 (184)
156 4dkx_A RAS-related protein RAB 99.6 1.8E-15 6.1E-20 141.3 14.6 150 64-264 12-167 (216)
157 2iwr_A Centaurin gamma 1; ANK 99.6 2.1E-15 7.3E-20 135.8 13.7 146 63-265 5-161 (178)
158 3c5c_A RAS-like protein 12; GD 99.6 2E-15 6.8E-20 137.6 13.5 150 62-264 18-177 (187)
159 3th5_A RAS-related C3 botulinu 99.4 2.1E-17 7.1E-22 152.8 0.0 159 63-265 28-197 (204)
160 3cbq_A GTP-binding protein REM 99.6 2.4E-15 8.1E-20 138.2 13.3 154 61-265 19-180 (195)
161 2wkq_A NPH1-1, RAS-related C3 99.6 2.2E-15 7.7E-20 149.7 13.9 159 62-264 152-321 (332)
162 2cxx_A Probable GTP-binding pr 99.6 9.2E-16 3.1E-20 139.5 10.1 155 66-265 2-176 (190)
163 3ihw_A Centg3; RAS, centaurin, 99.6 6E-15 2.1E-19 134.1 15.5 149 60-265 15-172 (184)
164 1gwn_A RHO-related GTP-binding 99.6 3.9E-15 1.4E-19 137.9 13.3 155 63-264 26-195 (205)
165 3lxx_A GTPase IMAP family memb 99.6 3.6E-15 1.2E-19 141.6 13.1 158 62-263 26-204 (239)
166 1lnz_A SPO0B-associated GTP-bi 99.6 3.9E-16 1.3E-20 155.5 5.8 152 65-265 158-322 (342)
167 1h65_A Chloroplast outer envel 99.6 8.4E-15 2.9E-19 141.7 14.7 117 63-216 37-167 (270)
168 2e87_A Hypothetical protein PH 99.6 8.2E-15 2.8E-19 147.6 14.7 153 63-265 165-328 (357)
169 2g3y_A GTP-binding protein GEM 99.6 1E-14 3.5E-19 135.8 13.2 153 63-265 35-195 (211)
170 1nrj_B SR-beta, signal recogni 99.6 4.3E-15 1.5E-19 138.6 10.4 151 62-260 9-171 (218)
171 2cjw_A GTP-binding protein GEM 99.6 1.7E-14 5.8E-19 132.1 13.5 153 63-265 4-164 (192)
172 3def_A T7I23.11 protein; chlor 99.6 7.5E-15 2.6E-19 141.4 11.3 118 63-216 34-164 (262)
173 2aka_B Dynamin-1; fusion prote 99.6 5.8E-15 2E-19 144.8 10.6 107 142-265 124-245 (299)
174 2zej_A Dardarin, leucine-rich 99.6 4.7E-15 1.6E-19 134.7 9.2 160 65-265 2-170 (184)
175 1jwy_B Dynamin A GTPase domain 99.6 4.3E-15 1.5E-19 146.9 9.0 69 141-217 129-212 (315)
176 2ged_A SR-beta, signal recogni 99.6 5.7E-15 2E-19 134.8 8.7 114 63-218 46-171 (193)
177 3dpu_A RAB family protein; roc 99.5 6.3E-15 2.2E-19 156.4 9.6 152 62-265 38-200 (535)
178 1pui_A ENGB, probable GTP-bind 99.5 3.4E-14 1.2E-18 131.6 13.2 156 61-264 22-190 (210)
179 1wxq_A GTP-binding protein; st 99.5 1.7E-14 5.8E-19 146.7 11.9 83 66-179 1-114 (397)
180 3p32_A Probable GTPase RV1496/ 99.5 7.3E-14 2.5E-18 140.5 9.1 108 139-265 168-276 (355)
181 2p67_A LAO/AO transport system 99.5 1.1E-13 3.6E-18 138.5 9.9 107 140-265 146-253 (341)
182 2f9l_A RAB11B, member RAS onco 99.5 3.2E-13 1.1E-17 124.1 12.3 151 64-265 4-160 (199)
183 2www_A Methylmalonic aciduria 99.5 6.3E-14 2.1E-18 140.4 7.6 107 140-265 164-271 (349)
184 3r7w_B Gtpase2, GTP-binding pr 99.4 1.3E-13 4.3E-18 135.2 8.3 177 67-285 1-187 (331)
185 2qag_A Septin-2, protein NEDD5 99.4 2.5E-13 8.6E-18 136.7 9.7 158 65-263 37-223 (361)
186 3c5h_A Glucocorticoid receptor 99.4 1.5E-13 5.3E-18 131.6 6.8 78 166-264 162-246 (255)
187 1oix_A RAS-related protein RAB 99.4 1.8E-12 6.1E-17 118.4 13.0 151 64-264 28-183 (191)
188 4a9a_A Ribosome-interacting GT 99.4 7.8E-13 2.7E-17 132.6 8.9 111 65-216 72-195 (376)
189 1udx_A The GTP-binding protein 99.4 6.1E-13 2.1E-17 135.6 7.8 152 65-265 157-317 (416)
190 2qpt_A EH domain-containing pr 99.4 1.5E-12 5.3E-17 137.8 10.5 80 143-233 154-244 (550)
191 2x2e_A Dynamin-1; nitration, h 99.4 1.1E-12 3.6E-17 131.9 8.7 107 142-265 129-250 (353)
192 2wsm_A Hydrogenase expression/ 99.3 4.2E-13 1.4E-17 125.3 4.0 164 64-265 29-206 (221)
193 3t34_A Dynamin-related protein 99.3 2.6E-12 8.9E-17 129.4 9.8 101 142-263 135-251 (360)
194 3zvr_A Dynamin-1; hydrolase, D 99.3 4E-12 1.4E-16 137.6 11.4 121 128-265 134-270 (772)
195 1jal_A YCHF protein; nucleotid 99.3 1.9E-11 6.5E-16 121.9 11.8 83 65-178 2-108 (363)
196 1yrb_A ATP(GTP)binding protein 99.2 1.1E-10 3.7E-15 111.8 13.7 107 142-265 108-249 (262)
197 2dby_A GTP-binding protein; GD 99.2 4.8E-11 1.6E-15 119.7 10.5 37 142-178 68-111 (368)
198 2qm8_A GTPase/ATPase; G protei 99.2 6.5E-11 2.2E-15 117.8 10.0 110 138-265 143-253 (337)
199 1xe1_A Hypothetical protein PF 99.1 1.4E-10 4.8E-15 94.1 9.1 81 291-375 31-113 (116)
200 2qnr_A Septin-2, protein NEDD5 99.0 1.2E-09 4.1E-14 107.0 12.9 160 65-265 18-206 (301)
201 2qag_C Septin-7; cell cycle, c 99.0 4.5E-10 1.5E-14 114.5 10.0 156 65-262 31-216 (418)
202 1cip_A Protein (guanine nucleo 99.0 3.1E-09 1E-13 106.1 14.5 134 128-265 178-336 (353)
203 2hf9_A Probable hydrogenase ni 99.0 5.7E-10 1.9E-14 104.2 8.7 99 142-265 118-216 (226)
204 2j37_W Signal recognition part 99.0 1.8E-09 6E-14 112.5 11.2 66 141-216 182-253 (504)
205 3ohm_A Guanine nucleotide-bind 98.9 7.6E-09 2.6E-13 101.8 12.9 131 127-264 151-309 (327)
206 3ec1_A YQEH GTPase; atnos1, at 98.9 8.6E-11 2.9E-15 118.5 -1.5 116 65-216 162-287 (369)
207 3h2y_A GTPase family protein; 98.9 1.6E-10 5.5E-15 116.4 0.0 151 65-263 160-320 (368)
208 4fid_A G protein alpha subunit 98.8 3.1E-08 1.1E-12 97.8 13.8 135 127-264 145-319 (340)
209 2ohf_A Protein OLA1, GTP-bindi 98.8 3.2E-09 1.1E-13 106.9 6.2 86 62-178 19-128 (396)
210 2qag_B Septin-6, protein NEDD5 98.8 1.6E-08 5.4E-13 102.7 10.8 141 65-253 42-216 (427)
211 1azs_C GS-alpha; complex (lyas 98.7 2.5E-07 8.5E-12 93.5 17.4 85 130-215 204-296 (402)
212 2xtz_A Guanine nucleotide-bind 98.7 1.3E-07 4.4E-12 94.3 13.8 70 142-215 182-262 (354)
213 3dm5_A SRP54, signal recogniti 98.7 1.5E-08 5.1E-13 103.4 6.2 96 141-264 181-282 (443)
214 1tq4_A IIGP1, interferon-induc 98.6 1.4E-07 4.6E-12 95.9 12.1 157 64-265 68-245 (413)
215 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 4.4E-08 1.5E-12 98.8 8.4 87 62-178 17-127 (392)
216 3sop_A Neuronal-specific septi 98.6 1.4E-07 4.9E-12 90.6 11.3 64 166-242 111-175 (270)
217 2v3c_C SRP54, signal recogniti 98.6 2.7E-07 9.3E-12 94.5 12.5 65 141-215 179-250 (432)
218 1zcb_A G alpha I/13; GTP-bindi 98.5 2.6E-07 8.9E-12 92.4 9.3 136 129-265 187-345 (362)
219 3kl4_A SRP54, signal recogniti 98.4 1.2E-06 4.1E-11 89.3 12.7 95 141-264 178-281 (433)
220 1puj_A YLQF, conserved hypothe 98.4 1.8E-07 6.3E-12 90.4 5.8 60 62-154 117-176 (282)
221 1f5n_A Interferon-induced guan 98.3 2.6E-07 9E-12 97.7 3.6 26 62-87 35-60 (592)
222 1j8m_F SRP54, signal recogniti 98.3 6.5E-06 2.2E-10 80.1 13.0 65 141-215 179-251 (297)
223 1u0l_A Probable GTPase ENGC; p 98.2 1.8E-06 6.2E-11 84.3 7.6 102 144-265 64-165 (301)
224 1puj_A YLQF, conserved hypothe 98.2 2.6E-06 8.8E-11 82.3 8.3 94 147-265 3-98 (282)
225 3e70_C DPA, signal recognition 98.0 3.4E-05 1.2E-09 76.0 12.1 94 142-264 211-311 (328)
226 2yv5_A YJEQ protein; hydrolase 97.9 9.4E-06 3.2E-10 79.2 6.3 96 153-265 66-161 (302)
227 3cnl_A YLQF, putative uncharac 97.9 3.6E-06 1.2E-10 80.4 2.9 57 66-155 100-156 (262)
228 2xxa_A Signal recognition part 97.9 1.9E-05 6.5E-10 80.8 8.0 64 141-215 182-252 (433)
229 3cnl_A YLQF, putative uncharac 97.8 5.1E-05 1.7E-09 72.3 8.3 88 151-265 5-93 (262)
230 3ec1_A YQEH GTPase; atnos1, at 97.7 3.3E-05 1.1E-09 77.5 6.2 104 145-265 51-154 (369)
231 1t9h_A YLOQ, probable GTPase E 97.7 5.5E-05 1.9E-09 73.6 7.5 87 163-265 83-169 (307)
232 2yhs_A FTSY, cell division pro 97.7 8.8E-05 3E-09 76.4 8.7 26 63-88 291-316 (503)
233 3h2y_A GTPase family protein; 97.7 4E-05 1.4E-09 76.8 6.0 97 153-265 56-152 (368)
234 3l82_B F-box only protein 4; T 97.6 8.6E-05 2.9E-09 67.4 7.0 94 152-263 111-213 (227)
235 3szr_A Interferon-induced GTP- 97.6 0.0001 3.4E-09 78.9 8.7 66 142-217 146-228 (608)
236 1d1n_A Initiation factor 2; be 97.6 7.9E-05 2.7E-09 58.7 5.5 77 297-375 9-90 (99)
237 2crv_A IF-2MT, translation ini 97.5 0.00034 1.2E-08 57.0 8.0 79 296-376 12-99 (120)
238 1rj9_A FTSY, signal recognitio 97.5 0.00035 1.2E-08 67.9 9.5 25 64-88 101-125 (304)
239 2px0_A Flagellar biosynthesis 97.5 0.0002 7E-09 69.4 7.5 25 63-87 103-127 (296)
240 3q5d_A Atlastin-1; G protein, 97.4 0.00046 1.6E-08 70.5 9.6 27 62-88 64-90 (447)
241 1vma_A Cell division protein F 97.4 0.00041 1.4E-08 67.5 8.7 26 63-88 102-127 (306)
242 2ffh_A Protein (FFH); SRP54, s 97.2 0.00078 2.7E-08 68.4 8.9 64 141-215 179-249 (425)
243 1zu4_A FTSY; GTPase, signal re 97.2 0.00072 2.4E-08 66.2 8.3 25 63-87 103-127 (320)
244 3l2o_B F-box only protein 4; s 97.2 0.00052 1.8E-08 65.4 6.3 96 150-263 194-298 (312)
245 2rcn_A Probable GTPase ENGC; Y 96.9 0.0014 4.8E-08 64.9 7.5 84 163-264 127-210 (358)
246 1zo1_I IF2, translation initia 96.9 0.0024 8.2E-08 66.2 9.2 95 280-376 394-493 (501)
247 3b9q_A Chloroplast SRP recepto 96.9 0.0041 1.4E-07 60.3 9.9 27 62-88 97-123 (302)
248 4dzz_A Plasmid partitioning pr 96.8 0.006 2.1E-07 55.0 10.1 63 142-215 75-142 (206)
249 1ls1_A Signal recognition part 96.7 0.0043 1.5E-07 59.9 9.1 64 141-215 179-249 (295)
250 3izy_P Translation initiation 96.7 0.0044 1.5E-07 64.8 9.7 179 148-374 346-534 (537)
251 2og2_A Putative signal recogni 96.7 0.0044 1.5E-07 61.5 9.1 26 63-88 155-180 (359)
252 3cwq_A Para family chromosome 96.3 0.011 3.6E-07 54.0 8.5 65 141-215 66-132 (209)
253 1g7s_A Translation initiation 96.2 0.019 6.4E-07 61.0 10.8 83 293-376 462-549 (594)
254 1t9h_A YLOQ, probable GTPase E 96.2 0.0016 5.4E-08 63.3 2.1 23 64-86 172-194 (307)
255 2yv5_A YJEQ protein; hydrolase 95.7 0.0095 3.3E-07 57.7 5.0 22 65-86 165-186 (302)
256 3c8u_A Fructokinase; YP_612366 95.4 0.0092 3.1E-07 54.2 3.8 27 62-88 19-45 (208)
257 1ye8_A Protein THEP1, hypothet 95.4 0.0082 2.8E-07 53.3 3.3 23 67-89 2-24 (178)
258 3end_A Light-independent proto 95.4 0.025 8.7E-07 54.6 7.0 67 141-215 155-225 (307)
259 1lvg_A Guanylate kinase, GMP k 95.4 0.007 2.4E-07 54.7 2.7 25 64-88 3-27 (198)
260 1kgd_A CASK, peripheral plasma 95.3 0.01 3.5E-07 52.6 3.5 24 65-88 5-28 (180)
261 1knq_A Gluconate kinase; ALFA/ 95.0 0.018 6.3E-07 50.4 4.3 29 63-91 6-34 (175)
262 4eun_A Thermoresistant glucoki 95.0 0.015 5.3E-07 52.3 3.8 30 63-92 27-56 (200)
263 3tr0_A Guanylate kinase, GMP k 94.9 0.016 5.3E-07 52.2 3.7 25 64-88 6-30 (205)
264 1zp6_A Hypothetical protein AT 94.9 0.014 4.9E-07 51.9 3.3 26 63-88 7-32 (191)
265 3ney_A 55 kDa erythrocyte memb 94.8 0.018 6E-07 52.0 3.7 28 62-89 16-43 (197)
266 3asz_A Uridine kinase; cytidin 94.8 0.017 6E-07 52.3 3.7 28 63-90 4-31 (211)
267 1kag_A SKI, shikimate kinase I 94.6 0.018 6.1E-07 50.3 3.2 26 66-91 5-30 (173)
268 3a00_A Guanylate kinase, GMP k 94.6 0.018 6.1E-07 51.3 3.1 22 67-88 3-24 (186)
269 1znw_A Guanylate kinase, GMP k 94.6 0.019 6.6E-07 52.0 3.4 29 61-89 16-44 (207)
270 3tau_A Guanylate kinase, GMP k 94.5 0.02 6.8E-07 52.0 3.4 27 63-89 6-32 (208)
271 1s96_A Guanylate kinase, GMP k 94.5 0.023 7.7E-07 52.3 3.6 29 61-89 12-40 (219)
272 2rcn_A Probable GTPase ENGC; Y 94.4 0.019 6.5E-07 56.8 3.2 23 65-87 215-237 (358)
273 2bbw_A Adenylate kinase 4, AK4 94.4 0.026 9.1E-07 52.6 4.0 28 65-92 27-54 (246)
274 2j41_A Guanylate kinase; GMP, 94.4 0.021 7.2E-07 51.4 3.2 25 64-88 5-29 (207)
275 1z6g_A Guanylate kinase; struc 94.4 0.019 6.4E-07 52.7 2.8 27 63-89 21-47 (218)
276 4ido_A Atlastin-1; GTPase, GTP 94.4 0.26 9E-06 50.0 11.4 26 62-87 64-89 (457)
277 3cm0_A Adenylate kinase; ATP-b 94.3 0.032 1.1E-06 49.3 4.1 28 64-91 3-30 (186)
278 4gp7_A Metallophosphoesterase; 94.3 0.024 8.1E-07 49.8 3.2 23 64-86 8-30 (171)
279 3kb2_A SPBC2 prophage-derived 94.2 0.03 1E-06 48.6 3.6 24 67-90 3-26 (173)
280 2jeo_A Uridine-cytidine kinase 94.1 0.031 1E-06 52.2 3.8 29 63-91 23-51 (245)
281 1htw_A HI0065; nucleotide-bind 94.0 0.035 1.2E-06 48.2 3.7 26 63-88 31-56 (158)
282 3t61_A Gluconokinase; PSI-biol 94.0 0.032 1.1E-06 50.1 3.5 27 65-91 18-44 (202)
283 3lw7_A Adenylate kinase relate 94.0 0.033 1.1E-06 48.3 3.5 25 66-91 2-26 (179)
284 2v9p_A Replication protein E1; 94.0 0.029 9.8E-07 54.3 3.3 28 61-88 122-149 (305)
285 3vaa_A Shikimate kinase, SK; s 94.0 0.038 1.3E-06 49.7 3.9 28 64-91 24-51 (199)
286 2qor_A Guanylate kinase; phosp 93.9 0.026 8.9E-07 51.0 2.7 28 62-89 9-36 (204)
287 1bif_A 6-phosphofructo-2-kinas 93.8 0.0077 2.7E-07 62.2 -1.1 25 63-87 37-61 (469)
288 3uie_A Adenylyl-sulfate kinase 93.8 0.046 1.6E-06 49.1 4.3 27 63-89 23-49 (200)
289 2bdt_A BH3686; alpha-beta prot 93.8 0.035 1.2E-06 49.3 3.3 24 66-89 3-26 (189)
290 2rhm_A Putative kinase; P-loop 93.8 0.046 1.6E-06 48.5 4.1 28 64-91 4-31 (193)
291 1cke_A CK, MSSA, protein (cyti 93.8 0.038 1.3E-06 50.5 3.7 25 66-90 6-30 (227)
292 2eyu_A Twitching motility prot 93.7 0.039 1.3E-06 52.1 3.7 25 63-87 23-47 (261)
293 3kjh_A CO dehydrogenase/acetyl 93.7 0.047 1.6E-06 50.6 4.2 66 141-215 130-195 (254)
294 3aez_A Pantothenate kinase; tr 93.7 0.043 1.5E-06 53.3 4.0 28 62-89 87-114 (312)
295 3fb4_A Adenylate kinase; psych 93.6 0.045 1.5E-06 49.7 3.8 25 67-91 2-26 (216)
296 2qt1_A Nicotinamide riboside k 93.6 0.045 1.5E-06 49.4 3.8 28 61-88 17-44 (207)
297 4e22_A Cytidylate kinase; P-lo 93.6 0.044 1.5E-06 51.4 3.7 30 63-92 25-54 (252)
298 2jaq_A Deoxyguanosine kinase; 93.6 0.045 1.6E-06 48.9 3.7 25 67-91 2-26 (205)
299 2yvu_A Probable adenylyl-sulfa 93.6 0.045 1.5E-06 48.4 3.6 27 61-87 9-35 (186)
300 1aky_A Adenylate kinase; ATP:A 93.6 0.045 1.5E-06 49.9 3.8 29 63-91 2-30 (220)
301 3tif_A Uncharacterized ABC tra 93.5 0.037 1.3E-06 51.4 3.0 24 63-86 29-52 (235)
302 3lnc_A Guanylate kinase, GMP k 93.5 0.029 9.8E-07 51.7 2.2 24 63-86 25-48 (231)
303 3b85_A Phosphate starvation-in 93.4 0.038 1.3E-06 50.3 3.0 24 64-87 21-44 (208)
304 1g3q_A MIND ATPase, cell divis 93.4 0.088 3E-06 48.4 5.5 66 141-215 110-175 (237)
305 1np6_A Molybdopterin-guanine d 93.4 0.045 1.5E-06 48.3 3.3 23 65-87 6-28 (174)
306 3trf_A Shikimate kinase, SK; a 93.4 0.053 1.8E-06 47.8 3.8 27 65-91 5-31 (185)
307 2plr_A DTMP kinase, probable t 93.4 0.057 2E-06 48.5 4.1 27 65-91 4-30 (213)
308 2c95_A Adenylate kinase 1; tra 93.4 0.054 1.8E-06 48.1 3.9 28 64-91 8-35 (196)
309 2pcj_A ABC transporter, lipopr 93.4 0.039 1.3E-06 50.8 3.0 23 64-86 29-51 (224)
310 1u0l_A Probable GTPase ENGC; p 93.4 0.038 1.3E-06 53.4 3.0 23 65-87 169-191 (301)
311 2onk_A Molybdate/tungstate ABC 93.3 0.041 1.4E-06 51.3 3.1 21 66-86 25-45 (240)
312 1tev_A UMP-CMP kinase; ploop, 93.3 0.055 1.9E-06 47.9 3.9 27 65-91 3-29 (196)
313 3dl0_A Adenylate kinase; phosp 93.3 0.051 1.7E-06 49.3 3.7 25 67-91 2-26 (216)
314 1ex7_A Guanylate kinase; subst 93.3 0.046 1.6E-06 48.8 3.2 21 68-88 4-24 (186)
315 2if2_A Dephospho-COA kinase; a 93.3 0.051 1.8E-06 48.8 3.6 25 66-91 2-26 (204)
316 2i3b_A HCR-ntpase, human cance 93.2 0.047 1.6E-06 48.8 3.2 22 67-88 3-24 (189)
317 2ph1_A Nucleotide-binding prot 93.2 0.13 4.4E-06 48.3 6.5 68 141-215 127-194 (262)
318 1kht_A Adenylate kinase; phosp 93.2 0.044 1.5E-06 48.4 3.0 26 65-90 3-28 (192)
319 1ly1_A Polynucleotide kinase; 93.2 0.049 1.7E-06 47.6 3.2 22 66-87 3-24 (181)
320 1y63_A LMAJ004144AAA protein; 93.2 0.065 2.2E-06 47.4 4.0 27 64-90 9-36 (184)
321 1mv5_A LMRA, multidrug resista 93.1 0.047 1.6E-06 50.9 3.2 24 63-86 26-49 (243)
322 2cbz_A Multidrug resistance-as 93.1 0.046 1.6E-06 50.8 3.0 24 63-86 29-52 (237)
323 2f1r_A Molybdopterin-guanine d 93.1 0.027 9.3E-07 49.5 1.4 21 66-86 3-23 (171)
324 1jjv_A Dephospho-COA kinase; P 93.1 0.051 1.7E-06 48.9 3.2 25 66-91 3-27 (206)
325 1uf9_A TT1252 protein; P-loop, 93.1 0.056 1.9E-06 48.3 3.5 28 63-91 6-33 (203)
326 3tlx_A Adenylate kinase 2; str 93.1 0.069 2.3E-06 49.7 4.2 28 64-91 28-55 (243)
327 3tqc_A Pantothenate kinase; bi 93.0 0.062 2.1E-06 52.3 3.9 29 62-90 89-117 (321)
328 1qhx_A CPT, protein (chloramph 93.0 0.062 2.1E-06 46.9 3.7 25 66-90 4-28 (178)
329 1sgw_A Putative ABC transporte 93.0 0.046 1.6E-06 50.0 2.8 23 64-86 34-56 (214)
330 2pze_A Cystic fibrosis transme 93.0 0.046 1.6E-06 50.5 2.8 23 64-86 33-55 (229)
331 2p5t_B PEZT; postsegregational 93.0 0.055 1.9E-06 50.7 3.4 29 62-90 29-57 (253)
332 1nks_A Adenylate kinase; therm 93.0 0.056 1.9E-06 47.8 3.3 25 66-90 2-26 (194)
333 2v54_A DTMP kinase, thymidylat 92.9 0.054 1.8E-06 48.5 3.2 26 64-89 3-28 (204)
334 1sq5_A Pantothenate kinase; P- 92.9 0.072 2.4E-06 51.6 4.2 28 63-90 78-105 (308)
335 1hyq_A MIND, cell division inh 92.8 0.11 3.6E-06 48.7 5.2 66 141-215 109-174 (263)
336 4g1u_C Hemin import ATP-bindin 92.8 0.05 1.7E-06 51.5 2.9 24 63-86 35-58 (266)
337 2cdn_A Adenylate kinase; phosp 92.8 0.079 2.7E-06 47.5 4.1 30 62-91 17-46 (201)
338 1zd8_A GTP:AMP phosphotransfer 92.8 0.066 2.3E-06 49.1 3.6 28 64-91 6-33 (227)
339 1rz3_A Hypothetical protein rb 92.8 0.066 2.3E-06 48.2 3.5 27 62-88 19-45 (201)
340 2ghi_A Transport protein; mult 92.8 0.054 1.8E-06 51.1 3.0 25 63-87 44-68 (260)
341 2d2e_A SUFC protein; ABC-ATPas 92.8 0.053 1.8E-06 50.8 2.9 25 63-87 27-51 (250)
342 2wwf_A Thymidilate kinase, put 92.7 0.059 2E-06 48.6 3.2 26 63-88 8-33 (212)
343 3be4_A Adenylate kinase; malar 92.7 0.074 2.5E-06 48.4 3.9 28 64-91 4-31 (217)
344 2ff7_A Alpha-hemolysin translo 92.7 0.052 1.8E-06 50.8 2.8 24 63-86 33-56 (247)
345 1g6h_A High-affinity branched- 92.7 0.052 1.8E-06 51.1 2.8 24 63-86 31-54 (257)
346 1b0u_A Histidine permease; ABC 92.7 0.055 1.9E-06 51.1 3.0 24 63-86 30-53 (262)
347 1nn5_A Similar to deoxythymidy 92.7 0.062 2.1E-06 48.5 3.3 26 63-88 7-32 (215)
348 3iij_A Coilin-interacting nucl 92.7 0.068 2.3E-06 46.9 3.4 28 64-91 10-37 (180)
349 2bwj_A Adenylate kinase 5; pho 92.7 0.066 2.2E-06 47.7 3.3 27 65-91 12-38 (199)
350 3gfo_A Cobalt import ATP-bindi 92.6 0.052 1.8E-06 51.7 2.7 24 63-86 32-55 (275)
351 1ukz_A Uridylate kinase; trans 92.6 0.085 2.9E-06 47.2 4.1 29 63-91 13-41 (203)
352 2olj_A Amino acid ABC transpor 92.6 0.058 2E-06 51.0 3.0 24 63-86 48-71 (263)
353 1xjc_A MOBB protein homolog; s 92.6 0.067 2.3E-06 46.9 3.2 23 65-87 4-26 (169)
354 1e4v_A Adenylate kinase; trans 92.6 0.077 2.6E-06 48.1 3.8 25 67-91 2-26 (214)
355 3ec2_A DNA replication protein 92.6 0.061 2.1E-06 47.3 3.0 23 65-87 38-60 (180)
356 2ehv_A Hypothetical protein PH 92.6 0.058 2E-06 49.9 3.0 25 62-86 27-51 (251)
357 1ji0_A ABC transporter; ATP bi 92.6 0.056 1.9E-06 50.3 2.8 23 64-86 31-53 (240)
358 2zu0_C Probable ATP-dependent 92.6 0.06 2.1E-06 51.0 3.1 25 63-87 44-68 (267)
359 2gza_A Type IV secretion syste 92.6 0.047 1.6E-06 54.2 2.4 25 63-87 173-197 (361)
360 4a74_A DNA repair and recombin 92.6 0.072 2.5E-06 48.5 3.5 26 62-87 22-47 (231)
361 1via_A Shikimate kinase; struc 92.5 0.068 2.3E-06 46.7 3.1 25 67-91 6-30 (175)
362 1vpl_A ABC transporter, ATP-bi 92.5 0.063 2.1E-06 50.5 3.0 24 63-86 39-62 (256)
363 2qi9_C Vitamin B12 import ATP- 92.4 0.06 2E-06 50.4 2.8 24 63-86 24-47 (249)
364 1odf_A YGR205W, hypothetical 3 92.4 0.075 2.6E-06 51.0 3.6 27 62-88 28-54 (290)
365 2pez_A Bifunctional 3'-phospho 92.4 0.072 2.5E-06 46.7 3.3 25 63-87 3-27 (179)
366 2ixe_A Antigen peptide transpo 92.4 0.064 2.2E-06 50.9 3.0 24 63-86 43-66 (271)
367 2pt5_A Shikimate kinase, SK; a 92.3 0.088 3E-06 45.5 3.7 25 67-91 2-26 (168)
368 2yz2_A Putative ABC transporte 92.3 0.069 2.3E-06 50.6 3.0 24 63-86 31-54 (266)
369 2ewv_A Twitching motility prot 92.2 0.08 2.7E-06 52.7 3.6 25 63-87 134-158 (372)
370 2kjq_A DNAA-related protein; s 92.2 0.075 2.6E-06 45.5 2.9 23 64-86 35-57 (149)
371 1zak_A Adenylate kinase; ATP:A 92.2 0.081 2.8E-06 48.3 3.3 27 65-91 5-31 (222)
372 1qf9_A UMP/CMP kinase, protein 92.2 0.11 3.9E-06 45.7 4.2 27 65-91 6-32 (194)
373 2ihy_A ABC transporter, ATP-bi 92.2 0.067 2.3E-06 51.0 2.8 24 63-86 45-68 (279)
374 3kta_A Chromosome segregation 92.1 0.091 3.1E-06 46.1 3.5 24 67-90 28-51 (182)
375 2nq2_C Hypothetical ABC transp 92.1 0.069 2.4E-06 50.1 2.8 23 64-86 30-52 (253)
376 1uj2_A Uridine-cytidine kinase 92.1 0.099 3.4E-06 48.8 3.9 28 63-90 20-47 (252)
377 3jvv_A Twitching mobility prot 92.1 0.093 3.2E-06 51.9 3.8 22 66-87 124-145 (356)
378 3umf_A Adenylate kinase; rossm 92.0 0.13 4.4E-06 47.0 4.4 31 61-91 25-55 (217)
379 3nh6_A ATP-binding cassette SU 92.0 0.049 1.7E-06 52.7 1.6 25 62-86 77-101 (306)
380 2vli_A Antibiotic resistance p 91.9 0.076 2.6E-06 46.6 2.7 26 65-90 5-30 (183)
381 2pt7_A CAG-ALFA; ATPase, prote 91.9 0.047 1.6E-06 53.5 1.4 23 64-86 170-192 (330)
382 3la6_A Tyrosine-protein kinase 91.9 0.3 1E-05 46.6 7.1 66 142-215 201-266 (286)
383 1gvn_B Zeta; postsegregational 91.8 0.1 3.4E-06 50.0 3.7 27 63-89 31-57 (287)
384 2pjz_A Hypothetical protein ST 91.8 0.083 2.9E-06 49.9 3.0 22 65-86 30-51 (263)
385 2oap_1 GSPE-2, type II secreti 91.8 0.058 2E-06 56.1 2.0 23 64-86 259-281 (511)
386 3sr0_A Adenylate kinase; phosp 91.8 0.11 3.8E-06 47.1 3.7 25 67-91 2-26 (206)
387 1zuh_A Shikimate kinase; alpha 91.7 0.11 3.9E-06 44.9 3.6 27 65-91 7-33 (168)
388 1lw7_A Transcriptional regulat 91.7 0.077 2.6E-06 52.6 2.8 26 65-90 170-195 (365)
389 2vp4_A Deoxynucleoside kinase; 91.7 0.077 2.6E-06 48.8 2.6 30 61-90 16-45 (230)
390 2bbs_A Cystic fibrosis transme 91.7 0.09 3.1E-06 50.4 3.1 24 63-86 62-85 (290)
391 3r20_A Cytidylate kinase; stru 91.6 0.11 3.9E-06 48.0 3.7 28 64-91 8-35 (233)
392 1vht_A Dephospho-COA kinase; s 91.6 0.1 3.5E-06 47.3 3.4 26 65-91 4-29 (218)
393 2xb4_A Adenylate kinase; ATP-b 91.6 0.12 3.9E-06 47.4 3.7 25 67-91 2-26 (223)
394 4eaq_A DTMP kinase, thymidylat 91.6 0.14 4.9E-06 47.1 4.3 28 63-90 24-51 (229)
395 2iyv_A Shikimate kinase, SK; t 91.6 0.091 3.1E-06 46.2 2.9 26 66-91 3-28 (184)
396 3nwj_A ATSK2; P loop, shikimat 91.5 0.094 3.2E-06 49.1 3.1 27 65-91 48-74 (250)
397 1nij_A Hypothetical protein YJ 91.5 0.1 3.5E-06 50.7 3.4 25 64-88 3-27 (318)
398 2pbr_A DTMP kinase, thymidylat 91.5 0.099 3.4E-06 46.2 3.1 23 67-89 2-24 (195)
399 2z0h_A DTMP kinase, thymidylat 91.4 0.12 4E-06 45.9 3.5 23 67-89 2-24 (197)
400 2grj_A Dephospho-COA kinase; T 91.4 0.16 5.5E-06 45.4 4.3 31 61-91 8-38 (192)
401 1gtv_A TMK, thymidylate kinase 91.3 0.048 1.6E-06 49.3 0.8 21 67-87 2-22 (214)
402 1ak2_A Adenylate kinase isoenz 91.3 0.13 4.5E-06 47.3 3.8 29 63-91 14-42 (233)
403 3fvq_A Fe(3+) IONS import ATP- 91.3 0.096 3.3E-06 51.7 3.0 45 192-240 144-189 (359)
404 3tui_C Methionine import ATP-b 91.3 0.1 3.5E-06 51.7 3.1 25 63-87 52-76 (366)
405 1p9r_A General secretion pathw 91.3 0.13 4.3E-06 52.1 3.8 26 63-88 165-190 (418)
406 1e6c_A Shikimate kinase; phosp 91.3 0.12 4.2E-06 44.7 3.4 26 66-91 3-28 (173)
407 2ze6_A Isopentenyl transferase 91.2 0.14 4.8E-06 47.9 3.8 25 67-91 3-27 (253)
408 3a4m_A L-seryl-tRNA(SEC) kinas 91.1 0.12 4E-06 48.6 3.3 24 65-88 4-27 (260)
409 1z47_A CYSA, putative ABC-tran 91.0 0.1 3.6E-06 51.4 2.9 44 193-240 152-196 (355)
410 1ixz_A ATP-dependent metallopr 90.9 0.21 7E-06 46.5 4.8 22 68-89 52-73 (254)
411 2x8a_A Nuclear valosin-contain 90.9 0.13 4.5E-06 48.8 3.4 23 68-90 47-69 (274)
412 1m7g_A Adenylylsulfate kinase; 90.9 0.14 4.8E-06 46.3 3.5 25 63-87 23-47 (211)
413 1q3t_A Cytidylate kinase; nucl 90.8 0.16 5.4E-06 46.8 3.8 30 62-91 13-42 (236)
414 3bos_A Putative DNA replicatio 90.7 0.23 7.9E-06 45.2 4.9 23 64-86 51-73 (242)
415 1g29_1 MALK, maltose transport 90.6 0.12 4E-06 51.4 2.9 23 64-86 28-50 (372)
416 1f2t_A RAD50 ABC-ATPase; DNA d 90.5 0.15 5.1E-06 43.6 3.1 23 67-89 25-47 (149)
417 2yyz_A Sugar ABC transporter, 90.5 0.13 4.6E-06 50.8 3.1 44 193-240 140-184 (359)
418 2npi_A Protein CLP1; CLP1-PCF1 90.5 0.13 4.3E-06 52.8 3.0 25 63-87 136-160 (460)
419 2w0m_A SSO2452; RECA, SSPF, un 90.2 0.16 5.5E-06 46.1 3.3 23 64-86 22-44 (235)
420 2it1_A 362AA long hypothetical 90.2 0.15 5E-06 50.5 3.1 25 63-87 27-51 (362)
421 3bfv_A CAPA1, CAPB2, membrane 90.1 0.37 1.3E-05 45.5 5.8 66 142-215 191-256 (271)
422 2vhj_A Ntpase P4, P4; non- hyd 90.1 0.21 7E-06 48.5 3.9 22 66-87 124-145 (331)
423 1iy2_A ATP-dependent metallopr 90.1 0.2 6.9E-06 47.4 3.9 22 68-89 76-97 (278)
424 1v43_A Sugar-binding transport 90.1 0.15 5.2E-06 50.6 3.1 47 189-240 145-192 (372)
425 3rlf_A Maltose/maltodextrin im 90.0 0.15 5.2E-06 50.7 3.1 45 192-240 139-184 (381)
426 1svm_A Large T antigen; AAA+ f 90.0 0.2 7E-06 49.8 4.0 28 62-89 166-193 (377)
427 3cio_A ETK, tyrosine-protein k 89.8 0.64 2.2E-05 44.5 7.3 66 142-215 213-278 (299)
428 1wcv_1 SOJ, segregation protei 89.8 0.79 2.7E-05 42.6 7.8 66 141-215 110-181 (257)
429 2f6r_A COA synthase, bifunctio 89.7 0.21 7.2E-06 47.5 3.7 28 63-91 73-100 (281)
430 3ea0_A ATPase, para family; al 89.7 0.23 7.9E-06 45.7 3.9 65 142-215 118-184 (245)
431 3ake_A Cytidylate kinase; CMP 89.5 0.23 7.9E-06 44.3 3.7 25 67-91 4-28 (208)
432 3gmt_A Adenylate kinase; ssgci 89.5 0.24 8.1E-06 45.6 3.7 29 63-91 6-34 (230)
433 3gd7_A Fusion complex of cysti 89.4 0.19 6.4E-06 50.3 3.2 25 63-87 45-69 (390)
434 1cr0_A DNA primase/helicase; R 89.4 0.22 7.4E-06 47.6 3.6 26 62-87 32-57 (296)
435 1zcb_A G alpha I/13; GTP-bindi 89.4 0.2 6.7E-06 49.6 3.3 25 62-86 30-54 (362)
436 1lv7_A FTSH; alpha/beta domain 89.2 0.43 1.5E-05 44.4 5.4 24 65-88 45-68 (257)
437 3qf7_A RAD50; ABC-ATPase, ATPa 89.1 0.21 7.1E-06 49.6 3.3 24 64-88 23-46 (365)
438 3d31_A Sulfate/molybdate ABC t 89.0 0.13 4.5E-06 50.6 1.8 45 192-240 133-178 (348)
439 2obl_A ESCN; ATPase, hydrolase 89.0 0.24 8.1E-06 48.8 3.6 27 62-88 68-94 (347)
440 2cvh_A DNA repair and recombin 89.0 0.23 7.8E-06 44.8 3.2 26 62-87 17-42 (220)
441 1p5z_B DCK, deoxycytidine kina 88.7 0.16 5.4E-06 47.7 2.0 28 62-89 21-48 (263)
442 3euj_A Chromosome partition pr 88.6 0.22 7.5E-06 51.2 3.1 24 66-89 30-53 (483)
443 1in4_A RUVB, holliday junction 88.6 0.25 8.4E-06 48.3 3.4 25 66-90 52-76 (334)
444 3b5x_A Lipid A export ATP-bind 88.5 0.21 7.2E-06 52.8 3.0 25 63-87 367-391 (582)
445 1jbk_A CLPB protein; beta barr 88.4 0.31 1.1E-05 42.3 3.6 22 65-86 43-64 (195)
446 1oxx_K GLCV, glucose, ABC tran 88.2 0.13 4.4E-06 50.8 1.1 24 63-86 29-52 (353)
447 3k9g_A PF-32 protein; ssgcid, 88.2 1 3.6E-05 41.9 7.4 65 141-215 143-209 (267)
448 3b60_A Lipid A export ATP-bind 88.2 0.23 7.9E-06 52.5 3.1 24 63-86 367-390 (582)
449 1n0w_A DNA repair protein RAD5 88.2 0.25 8.7E-06 45.2 3.1 26 62-87 21-46 (243)
450 3q9l_A Septum site-determining 88.1 0.33 1.1E-05 45.0 3.8 65 142-215 113-185 (260)
451 1a7j_A Phosphoribulokinase; tr 87.9 0.18 6.1E-06 48.3 1.8 27 64-90 4-30 (290)
452 1u94_A RECA protein, recombina 87.8 3.4 0.00012 40.5 11.1 24 63-86 61-84 (356)
453 2oze_A ORF delta'; para, walke 87.7 1.3 4.4E-05 42.1 7.8 65 142-215 154-224 (298)
454 3hr8_A Protein RECA; alpha and 87.6 1.3 4.6E-05 43.5 8.0 25 62-86 58-82 (356)
455 3qf4_B Uncharacterized ABC tra 87.5 0.24 8.2E-06 52.6 2.7 25 62-86 378-402 (598)
456 2yl4_A ATP-binding cassette SU 87.5 0.23 7.9E-06 52.7 2.6 24 63-86 368-391 (595)
457 2dpy_A FLII, flagellum-specifi 87.5 0.31 1.1E-05 49.5 3.4 28 61-88 153-180 (438)
458 1yqt_A RNAse L inhibitor; ATP- 87.4 0.27 9.3E-06 51.4 3.0 26 62-87 44-69 (538)
459 1ltq_A Polynucleotide kinase; 87.4 0.31 1.1E-05 46.5 3.2 23 66-88 3-25 (301)
460 2b8t_A Thymidine kinase; deoxy 87.4 1.3 4.4E-05 40.5 7.2 24 63-86 10-33 (223)
461 2ocp_A DGK, deoxyguanosine kin 87.1 0.36 1.2E-05 44.5 3.3 25 65-89 2-26 (241)
462 3ozx_A RNAse L inhibitor; ATP 87.1 0.33 1.1E-05 50.7 3.4 25 63-87 23-47 (538)
463 3qks_A DNA double-strand break 86.8 0.31 1.1E-05 43.8 2.7 24 67-90 25-48 (203)
464 1nlf_A Regulatory protein REPA 86.8 0.36 1.2E-05 45.7 3.2 26 62-87 27-52 (279)
465 4a82_A Cystic fibrosis transme 86.8 0.21 7.3E-06 52.8 1.8 25 62-86 364-388 (578)
466 3zvl_A Bifunctional polynucleo 86.7 0.44 1.5E-05 48.0 4.0 27 63-89 256-282 (416)
467 3j16_B RLI1P; ribosome recycli 86.6 0.32 1.1E-05 51.6 3.0 25 63-87 101-125 (608)
468 1xwi_A SKD1 protein; VPS4B, AA 86.6 1.1 3.7E-05 43.4 6.6 24 63-86 43-66 (322)
469 2xj4_A MIPZ; replication, cell 86.4 1.5 5.2E-05 41.4 7.5 35 142-178 103-137 (286)
470 2h92_A Cytidylate kinase; ross 86.4 0.38 1.3E-05 43.4 3.1 27 65-91 3-29 (219)
471 3cr8_A Sulfate adenylyltranfer 86.2 0.31 1E-05 51.1 2.6 28 62-89 366-393 (552)
472 2qmh_A HPR kinase/phosphorylas 86.2 0.44 1.5E-05 42.7 3.2 23 64-86 33-55 (205)
473 3qf4_A ABC transporter, ATP-bi 85.9 0.26 9E-06 52.1 1.9 25 62-86 366-390 (587)
474 4aby_A DNA repair protein RECN 85.9 0.18 6.1E-06 50.7 0.6 29 61-90 57-85 (415)
475 2w58_A DNAI, primosome compone 85.8 0.51 1.7E-05 42.0 3.5 21 66-86 55-75 (202)
476 3bk7_A ABC transporter ATP-bin 85.5 0.38 1.3E-05 51.0 2.9 26 62-87 114-139 (607)
477 3crm_A TRNA delta(2)-isopenten 85.4 0.55 1.9E-05 45.5 3.8 25 66-90 6-30 (323)
478 1yqt_A RNAse L inhibitor; ATP- 85.3 0.4 1.4E-05 50.2 2.9 25 63-87 310-334 (538)
479 1sxj_A Activator 1 95 kDa subu 85.3 2.7 9.3E-05 43.5 9.3 24 65-88 77-100 (516)
480 2p65_A Hypothetical protein PF 85.2 0.43 1.5E-05 41.3 2.8 22 65-86 43-64 (187)
481 3d3q_A TRNA delta(2)-isopenten 85.2 0.58 2E-05 45.7 3.8 25 66-90 8-32 (340)
482 3v9p_A DTMP kinase, thymidylat 85.1 0.41 1.4E-05 44.0 2.6 26 63-88 23-48 (227)
483 2dr3_A UPF0273 protein PH0284; 85.1 0.52 1.8E-05 43.1 3.4 24 63-86 21-44 (247)
484 4f4c_A Multidrug resistance pr 85.1 0.32 1.1E-05 56.6 2.2 25 62-86 1102-1126(1321)
485 4edh_A DTMP kinase, thymidylat 85.0 0.53 1.8E-05 42.7 3.3 25 64-88 5-29 (213)
486 4f4c_A Multidrug resistance pr 85.0 0.37 1.2E-05 56.1 2.7 26 62-87 441-466 (1321)
487 1pzn_A RAD51, DNA repair and r 84.9 0.57 2E-05 46.0 3.7 27 62-88 128-154 (349)
488 2ga8_A Hypothetical 39.9 kDa p 84.8 0.47 1.6E-05 46.6 3.0 25 65-89 24-48 (359)
489 3tqf_A HPR(Ser) kinase; transf 84.6 0.54 1.9E-05 41.1 3.0 23 64-86 15-37 (181)
490 1qhl_A Protein (cell division 84.6 0.087 3E-06 48.6 -2.2 23 68-90 30-52 (227)
491 3bk7_A ABC transporter ATP-bin 84.6 0.45 1.5E-05 50.5 2.9 24 64-87 381-404 (607)
492 3tmk_A Thymidylate kinase; pho 84.5 0.71 2.4E-05 42.0 3.9 28 64-91 4-31 (216)
493 3ozx_A RNAse L inhibitor; ATP 84.5 0.45 1.5E-05 49.7 2.8 24 63-86 292-315 (538)
494 3io5_A Recombination and repai 84.4 3.4 0.00012 39.8 8.7 22 64-86 28-49 (333)
495 4ag6_A VIRB4 ATPase, type IV s 84.4 0.53 1.8E-05 46.9 3.2 24 64-87 34-57 (392)
496 1e69_A Chromosome segregation 84.4 0.45 1.5E-05 46.1 2.6 24 67-90 26-49 (322)
497 3j16_B RLI1P; ribosome recycli 84.1 0.5 1.7E-05 50.1 3.0 22 66-87 379-400 (608)
498 3a8t_A Adenylate isopentenyltr 84.1 0.6 2.1E-05 45.5 3.4 27 64-90 39-65 (339)
499 3lv8_A DTMP kinase, thymidylat 84.0 0.6 2.1E-05 43.1 3.2 24 64-87 26-49 (236)
500 3ux8_A Excinuclease ABC, A sub 84.0 0.39 1.3E-05 51.7 2.2 23 64-86 347-369 (670)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.1e-83 Score=665.98 Aligned_cols=426 Identities=58% Similarity=0.977 Sum_probs=407.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++.+||+++||+|+|||||+|+|++.++.++.+.+.++++++.+.|+.++.++|++|..++|+++|+|++.....+++
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
+++.++|+|||||++|.++|..+++.||++||||||+.|.++++|+..+|+++|+.++..+++|++|+|+||||++..+|
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 99999999999999999999999999999999999999999999988899999999999999998999999999987888
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEE
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 300 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~ 300 (496)
++++++++.+++..+++.+|+.+...++++|+||++|+|+.++.+ .++||+|++|++.|+.++++.+..+.|++++|.
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~--~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~ 250 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD--FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIV 250 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc--cccccCchHHHHHHHhCCCCccCCCCCeEEEEE
Confidence 999999999999999999998644468999999999999999876 489999999999999999888888999999999
Q ss_pred EEEccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCCCCc
Q 010985 301 DKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPV 380 (496)
Q Consensus 301 ~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~ 380 (496)
++|++.|++++|+|.+|+|++||.|.++|++..++|++|+++++++++|.|||+|+++|+|++..++++||+|+++++++
T Consensus 251 ~~~~~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~ 330 (439)
T 3j2k_7 251 DKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNLC 330 (439)
T ss_pred EEEcCCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEE
Q 010985 381 AAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 459 (496)
Q Consensus 381 ~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~ 459 (496)
+.++.|+|++.| +++ +++..||++++|||+.+++|+|.+|.+++|.+||+..+.+|++|+.|+.+.|++++.+|+|
T Consensus 331 ~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~~ 407 (439)
T 3j2k_7 331 HSGRTFDVQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTIC 407 (439)
T ss_pred ceeeEEEEEEEE---eCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCeEE
Confidence 889999999999 555 5699999999999999999999999999999999988889999999999999999999999
Q ss_pred eeeccCcCccceEEEEeCCcEEEEEEEEEcCC
Q 010985 460 TEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 491 (496)
Q Consensus 460 ~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~ 491 (496)
+|+|++|+.+|||+|||+|+|+|+|+|+++.+
T Consensus 408 ~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~~ 439 (439)
T 3j2k_7 408 LETFKDFPQMGRFTLRDEGKTIAIGKVLKLVQ 439 (439)
T ss_pred EeeccccccCCCEEEEECCceEEEEEEEEecC
Confidence 99999999999999999999999999999853
No 2
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=5.8e-79 Score=637.45 Aligned_cols=424 Identities=53% Similarity=0.949 Sum_probs=360.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++.++|+++||+|+|||||+++|++.+|.++.+.+.++.+++.+.|++++.+++++|..++|+++|+|++.....+++++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccH
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
+.++|+|||||++|.+++.++++.+|++|||||++.|.++++|+..+|+++|+.++..+++|++|||+||||+..++|++
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 99999999999999999999999999999999999999888888788999999999999998899999999997777889
Q ss_pred HHHHHHHHHHHHHHHhc-CCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEE
Q 010985 223 ERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 301 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~-~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~ 301 (496)
++++++.+++..+++.. |+.+..+++++|+||++|.|+.++.+...++||.|++|++.|+.++.|.+..+.|++++|++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~ 280 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIAS 280 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEE
Confidence 99999999999999988 87521257899999999999999887667999999999999999988877778999999999
Q ss_pred EEccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc-CccccccCCCCeEEEEeccCCccCcceeeEEecCCCCc
Q 010985 302 KFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPV 380 (496)
Q Consensus 302 ~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~ 380 (496)
+|++.|++++|+|.+|+|++||.|.++|++..++|++|+++ ++++++|.|||+|+++|+| +..++++|++|++++.++
T Consensus 281 ~~~~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~~~~ 359 (467)
T 1r5b_A 281 KYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKNPV 359 (467)
T ss_dssp EEESSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSSSCC
T ss_pred EEeCCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999998 9999999999999999999 888999999999999889
Q ss_pred ccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEe
Q 010985 381 AAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICT 460 (496)
Q Consensus 381 ~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~ 460 (496)
..++.|+|++.||+. ++++..||++++|+|+.+++|++..|.+++|. +++..+++|++|++|+.+.|+|+|.+|+|+
T Consensus 360 ~~~~~f~a~v~~l~~--~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~~p~~~ 436 (467)
T 1r5b_A 360 HATTRFIAQIAILEL--PSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCM 436 (467)
T ss_dssp CEEEEEEEEEEECSS--CCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEEEEEEC
T ss_pred ccceEEEEEEEEeCC--CCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEECcEEEE
Confidence 999999999999542 36799999999999999999999998888998 888878889999999999999999999999
Q ss_pred eeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 461 EKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 461 e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
++|.+|+.||||+||++|+|+|+|+|+++.
T Consensus 437 ~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~ 466 (467)
T 1r5b_A 437 ERFEDYQYMGRFTLRDQGTTVAVGKVVKIL 466 (467)
T ss_dssp CCTTTCHHHHEEEEECSSSCEEEEEEEEEE
T ss_pred EEcCcCCCCccEEEEECCeEEEEEEEEEec
Confidence 999999999999999999999999999875
No 3
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=5.7e-75 Score=605.84 Aligned_cols=424 Identities=38% Similarity=0.685 Sum_probs=395.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.++.++|+++||+|+|||||+|+|++..+.++.+.+.++.+++.+.|+.++.+++++|..++|+++|+|++.....+++.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|+|||||++|.+++..+++.+|++|||||++++.++++|+...|+++|+.++..+++|++|+|+||||+ .+|+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl--~~~~ 161 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS--VKWD 161 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG--GTTC
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc--ccCC
Confidence 99999999999999999999999999999999999999887777767799999999999999889999999999 5667
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCC------------hhhHHHHHhccCCCCC
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN------------GPCLFEALDRIEITPR 289 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~------------g~~L~~~l~~l~~~~~ 289 (496)
+++++++.+++..+++.+++.+ .+++++|+||++|.|+.++... ++||. |++|++.|+.+++|.+
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~vSA~~g~nv~~~~~~--~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~ 238 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNP-KTVPFVPISGWNGDNMIEATTN--APWYKGWEKETKAGVVKGKTLLEAIDAIEQPSR 238 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGCCEEECCTTTCBTTTBCCSS--CTTCCCEEEECSSSEEEESSHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-cCceEEEeecccCcCccccccc--CchhhcccccccccccchHHHHHHhhccCCCcc
Confidence 8889999999999999988752 2478999999999999988654 89997 6789999999988888
Q ss_pred CCCCCeEEEEEEEEc--cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCc
Q 010985 290 DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDI 367 (496)
Q Consensus 290 ~~~~p~~~~i~~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i 367 (496)
..+.|++++|.++|+ +.|+|++|+|++|.+++||+|.++|.+..++|++|+++++++++|.|||+|++.|+|++..++
T Consensus 239 ~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i 318 (458)
T 1f60_A 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEI 318 (458)
T ss_dssp CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTS
T ss_pred cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCccccc
Confidence 889999999999995 899999999999999999999999999999999999999999999999999999999988999
Q ss_pred ceeeEEecCCC-CcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCc
Q 010985 368 LSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGA 446 (496)
Q Consensus 368 ~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~ 446 (496)
++|++|+++++ ++..++.|+|++.||+. ..+|..||++++|+|+.+++|+|..|.+++|.+|++..+++|++|++|+
T Consensus 319 ~rG~vl~~~~~~~~~~~~~f~a~v~~l~~--~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~ 396 (458)
T 1f60_A 319 RRGNVCGDAKNDPPKGCASFNATVIVLNH--PGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGD 396 (458)
T ss_dssp CTTCEEEETTSSCCCCCSEEEEEEEECSC--SCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTC
T ss_pred CceeEEecCCCCCCceeeEEEEEEEEeCC--CCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCC
Confidence 99999999975 88899999999999531 3789999999999999999999999999999999998888999999999
Q ss_pred EEEEEEEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcCCC
Q 010985 447 IVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 492 (496)
Q Consensus 447 ~~~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~~ 492 (496)
.+.|+|+|.+|+|+++|.+|+.+|||+||++|+|+|+|+|+++.+.
T Consensus 397 ~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~ 442 (458)
T 1f60_A 397 AALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKT 442 (458)
T ss_dssp EEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC-
T ss_pred EEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeeccc
Confidence 9999999999999999999999999999999999999999998765
No 4
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-75 Score=627.59 Aligned_cols=424 Identities=33% Similarity=0.574 Sum_probs=393.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.++.++|+++|++|+|||||+|+|++..+.+..+.+.++.+++.+.|+.++.++|++|....|+.+|+|++.....+.+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|+|||||++|.+++..+++.+|++|+|||++.|.+++++...+|+++|+.++..++++++|||+||||+ .+|+
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl--~~~~ 321 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWS 321 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT--TTTC
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc--cchh
Confidence 99999999999999999999999999999999999999888888888999999999999999889999999999 5678
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCC-CCCCChhhHHHHHhcc--CC----CCCCCCCC
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSL-CPWWNGPCLFEALDRI--EI----TPRDPNGP 294 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~-~~w~~g~~L~~~l~~l--~~----~~~~~~~p 294 (496)
+.+++++.+++..+++.+|+.+ ..++++|+||++|.|+.++..... ++||.|++|.+.|+.+ .. |.+..+.|
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~-~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p 400 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 400 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcccc-cCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccc
Confidence 8899999999999999998862 357899999999999999865433 8999999999999987 22 33567899
Q ss_pred eEEEEEEEEc-----cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc--------CccccccCCCCeEEEEecc
Q 010985 295 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD--------DNRVRHAGPGENLRIRLSG 361 (496)
Q Consensus 295 ~~~~i~~~~~-----~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~--------~~~v~~a~aG~~v~~~l~~ 361 (496)
++++|.++|+ +.|+|++|+|.+|+|++||.|.++|++..++|++|+++ +.++++|.|||+|+|+|++
T Consensus 401 ~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~ 480 (611)
T 3izq_1 401 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 480 (611)
T ss_dssp CEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESS
T ss_pred hhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeee
Confidence 9999999995 47899999999999999999999999999999999998 4899999999999999999
Q ss_pred CCccCcceeeEEecCCC-CcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccce
Q 010985 362 IEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVL 440 (496)
Q Consensus 362 ~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~ 440 (496)
++..++++|+||++++. ++..++.|+|++.|++ +..+|..||++++|||+.+++|+|..|.+++|.+|++. +++|+
T Consensus 481 ~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~--~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~~ 557 (611)
T 3izq_1 481 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIR 557 (611)
T ss_dssp CCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECS--CSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCSC
T ss_pred ccHhhCcceEEccCCCCCCCceeeEEEEEEEEEC--CCCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-ccCcc
Confidence 99999999999999987 8899999999999953 13789999999999999999999999999999999887 77899
Q ss_pred eecCCcEEEEEEEE---CceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcCC
Q 010985 441 FVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 491 (496)
Q Consensus 441 ~l~~g~~~~v~~~~---~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~ 491 (496)
+|++|+.|.|+|++ .+|+|+++|.+++.+|||+||+.|+|||+|+|++|.+
T Consensus 558 ~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~~ 611 (611)
T 3izq_1 558 HLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 611 (611)
T ss_dssp SSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEECC
T ss_pred ccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEecC
Confidence 99999999999999 7899999999999999999999999999999998753
No 5
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=9.1e-75 Score=609.32 Aligned_cols=424 Identities=33% Similarity=0.568 Sum_probs=364.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.++.++|+++|++|+|||||+|+|++..+.++.+.+.++.+.+.+.|+.++.++|++|...+|+++|+|++.....+++.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|+|||||++|.+++..+++.+|++|||||++.+.++.+++...|+++|+.++..++++++|||+||||+ .+++
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl--~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG--GTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc--ccch
Confidence 99999999999999999999999999999999999999888888777899999999999998879999999999 5678
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCC-CCCCChhhHHHHHhcc----CC--CCCCCCCC
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSL-CPWWNGPCLFEALDRI----EI--TPRDPNGP 294 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~-~~w~~g~~L~~~l~~l----~~--~~~~~~~p 294 (496)
+++++++.+++..+++.+++.+ ..++++|+||++|.|+.++..... ++||.|++|+++|+.+ +. |.+..+.|
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p 266 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 266 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCc
Confidence 8999999999999999998862 357899999999999998765322 7899999999998876 22 45677899
Q ss_pred eEEEEEEEEc-----cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcC--------ccccccCCCCeEEEEecc
Q 010985 295 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD--------NRVRHAGPGENLRIRLSG 361 (496)
Q Consensus 295 ~~~~i~~~~~-----~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~--------~~v~~a~aG~~v~~~l~~ 361 (496)
++++|+++|+ +.|+|++|+|.+|+|++||.|.++|++..++|++|++++ .++++|.|||+|+|+|++
T Consensus 267 ~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~ 346 (483)
T 3p26_A 267 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 346 (483)
T ss_dssp CEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEES
T ss_pred eEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEe
Confidence 9999999995 478999999999999999999999999999999999994 899999999999999999
Q ss_pred CCccCcceeeEEecCCC-CcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccce
Q 010985 362 IEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVL 440 (496)
Q Consensus 362 ~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~ 440 (496)
++..++++||+|+++++ ++..++.|+|++.||+ +..+|..||++++|+|+.+++|+|..|.+++|.+|++. +++|+
T Consensus 347 ~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~--~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~~ 423 (483)
T 3p26_A 347 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIR 423 (483)
T ss_dssp CCGGGCCTTCEEECTTCCCCEECSEEEEEEEECS--CSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCCS
T ss_pred cccccCCceEEEEcCCCCCCceeeEEEEEEEEEC--CCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-ccCcc
Confidence 99999999999999987 8899999999999953 13789999999999999999999999999999999876 67899
Q ss_pred eecCCcEEEEEEEE---CceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcCC
Q 010985 441 FVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 491 (496)
Q Consensus 441 ~l~~g~~~~v~~~~---~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~ 491 (496)
+|++|+.+.|+|++ .+|+|+|+|.+|+.+|||+||++|+|||+|+|+.+..
T Consensus 424 ~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~ 477 (483)
T 3p26_A 424 HLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477 (483)
T ss_dssp CBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC
T ss_pred CcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEecc
Confidence 99999999999999 8899999999999999999999999999999998765
No 6
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=2.6e-74 Score=598.10 Aligned_cols=426 Identities=38% Similarity=0.705 Sum_probs=385.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.++.++|+++||+|+|||||+++|++..+.++.+.+.++++++.+.|+.++.+++++|..++|+++|+|++.....+++.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|+|||||++|..++.++++.+|++|+|||++++.+++.+...+|+++|+.++..++++++|+|+||||+...+|+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999999887776667899999999999998779999999999665578
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEE
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 301 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~ 301 (496)
+++++.+.+++..+++..++.+ ..++++|+||++|+|+.++.+. ++||.|++|++.|+.+++|.+..++|++++|.+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~i~iSA~~g~~v~e~~~~--~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~ 239 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNT-NKVRFVPVVAPSGDNITHKSEN--MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQD 239 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-TTCEEEECBTTTTBTTTBCCSS--CTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-CCceEEEeecccCccccccccc--cccccchhHHHHHhccCCCCCCCCCCeEEEEEE
Confidence 8899999999999999988752 2478999999999999988764 799999999999999888877778999999999
Q ss_pred EEc--cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCCCC
Q 010985 302 KFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 379 (496)
Q Consensus 302 ~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~ 379 (496)
+|+ +.|++++|+|.+|+|++||.|.++|.+...+|++|+++++++++|.|||+|+++|+|++..++++||+|++++.+
T Consensus 240 v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 240 VYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp EEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSC
T ss_pred EEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCC
Confidence 995 789999999999999999999999999999999999999999999999999999999998999999999999888
Q ss_pred cccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEE
Q 010985 380 VAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 459 (496)
Q Consensus 380 ~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~ 459 (496)
+..+..|.|++.|++. +.++..||++++|+|+.+++|+|..|.+++|.+|++..+++|++|++|+.+.|+|++.+|+|
T Consensus 320 ~~~~~~f~a~v~~l~~--~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~ 397 (435)
T 1jny_A 320 PTVADEFTARIIVVWH--PTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLC 397 (435)
T ss_dssp CCEESEEEEEEEECCC--SSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEE
T ss_pred ceEeEEEEEEEEEECC--CCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEE
Confidence 8899999999999432 37899999999999999999999999999999999988888999999999999999999999
Q ss_pred eeeccCcCccceEEEEeCCcEEEEEEEEEcCCC
Q 010985 460 TEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 492 (496)
Q Consensus 460 ~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~~ 492 (496)
+++|.+++.+|||+||+.|+|+|+|+|+++.+.
T Consensus 398 ~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~ 430 (435)
T 1jny_A 398 VEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPA 430 (435)
T ss_dssp CCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC-
T ss_pred EecCCcCCcCccEEEEECCeEEEEEEEeeecCc
Confidence 999999999999999999999999999998764
No 7
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-73 Score=610.91 Aligned_cols=417 Identities=33% Similarity=0.600 Sum_probs=327.4
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 60 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 60 ~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
...++.++|+++||+|+|||||+|+|++.++.+..+.+.++.+.+.+.|+.++.++|++|...+|+++|+|++.....+.
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~ 219 (496)
+.++.++|+|||||++|+++|..+++.+|++|||||++.|.++.++...+|+++|+.++..+++|++|||+||||+ .+
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl--~~ 329 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL--MS 329 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG--GT
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc--cc
Confidence 9999999999999999999999999999999999999999988888555899999999999999889999999999 66
Q ss_pred ccHHHHHHHHHHHHHHH-HhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEE
Q 010985 220 WSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 298 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l-~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~ 298 (496)
|++++++++.+++..++ +.+|+.. .+++++|+||++|.|+.++.....++||.|++|++.|..+.+|.+..+.|++++
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~-~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~ 408 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKT-SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLS 408 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCG-GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEE
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCc-cceEEEEEecccCcccccccccccccccchHHHHHHHHhhccccccccccchhe
Confidence 78889999999999999 8888862 357899999999999998776567899999999999998877778889999999
Q ss_pred EEEEEc-cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCcccc-ccCCCCeEEEEeccCCccCcceeeEEecC
Q 010985 299 IIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVR-HAGPGENLRIRLSGIEEEDILSGFVLSSV 376 (496)
Q Consensus 299 i~~~~~-~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~-~a~aG~~v~~~l~~~~~~~i~~G~vl~~~ 376 (496)
|.++|+ +.|++++|+|.+|+|++||.|.++|++..++|++|++++.+++ +|.||++|+|+|+|++..++++|+||+++
T Consensus 409 v~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~ 488 (592)
T 3mca_A 409 IDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNY 488 (592)
T ss_dssp EEEEEEETTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECS
T ss_pred eeEEEecCCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccC
Confidence 999985 6789999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEE-EC
Q 010985 377 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQ-VN 455 (496)
Q Consensus 377 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~-~~ 455 (496)
+.++..+..|+|++.||+. ..++..||++++|||+.+++|+| .|.. ..+++|++|++|+.+.|+|+ +.
T Consensus 489 ~~~~~~~~~f~a~v~~~~~--~~pi~~g~~~~l~~~t~~~~~~i-~l~~--------~~~~~~~~l~~gd~~~v~l~fl~ 557 (592)
T 3mca_A 489 ENPVRRVRSFVAEIQTFDI--HGPILSGSTLVLHLGRTVTSVSL-KIVT--------VNNKRSRHIASRKRALVRISFLD 557 (592)
T ss_dssp SSCCEEESEEEEEEEECSC--SSCEETTEEEEEECSSCEEEEEE-EEEE--------SSSSCCSEECSSCEEEEEEEESS
T ss_pred CCCccccCeEEEEEEEECC--CccCCCCCEEEEEEcCcEEEEEE-EEEe--------ccccchhccCCCCEEEEEEEECC
Confidence 9888899999999999542 27899999999999999999999 7764 12456889999999999999 99
Q ss_pred ceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 456 NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 456 ~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
+|+|+|+|.+|+.+|||+||+.|+|||+|+|++|.
T Consensus 558 ~p~~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 558 GLFPLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp SCEEECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred CcEEEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 99999999999999999999999999999999873
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.3e-68 Score=555.56 Aligned_cols=408 Identities=25% Similarity=0.431 Sum_probs=352.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCc--cchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
.++.++|+++||+|+|||||+++|++..+.+..+.+.++.+.....|. .++.+++.+|..++|+++|+|++.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 356799999999999999999999999998887766655555444443 457788899999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~ 219 (496)
+.++.++|+|||||++|.+++..+++.+|++|||+|++.+.+ .|+++|+.++..++++++|+|+||+|+ .+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-------~qt~~~l~~~~~~~~~~iIvviNK~Dl--~~ 171 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-------TQTRRHSYIASLLGIKHIVVAINKMDL--NG 171 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCEEEEEEECTTT--TT
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEEcCcC--Cc
Confidence 999999999999999999999999999999999999999864 599999999999999879999999999 55
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEE
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 299 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i 299 (496)
+++++++++.+++..+++.+++. ....+++++||++|.|+.++... ++||.|++|.+.|+.++.+.+..+.|++++|
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~-~~~~~~i~vSA~~g~gi~~~~~~--~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v 248 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFK-PTTMAFVPMSALKGDNVVNKSER--SPWYAGQSLMEILETVEIASDRNYTDLRFPV 248 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCC-CSEEEEEECCTTTCTTTSSCCTT--CTTCCSCCTTHHHHHSCCTTCCCSSSCEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCC-ccCceEEEEeccCCCCccccccc--CccccCchHHHHHhcCCCcccCCCCCcEEEE
Confidence 66778888899999999988742 12578999999999999998764 8999999999999999888888889999999
Q ss_pred EEEEc--cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCC
Q 010985 300 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 300 ~~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
+++++ ..|+.+.|+|.+|+|++||.|.++|++..++|++|++++.++++|.|||+|++++++ ..++++||+|+.++
T Consensus 249 ~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~~ 326 (434)
T 1zun_B 249 QYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHAD 326 (434)
T ss_dssp CEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEETT
T ss_pred EEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccCCccEEECCC
Confidence 99984 467789999999999999999999999999999999999999999999999999984 45799999999999
Q ss_pred CCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECce
Q 010985 378 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 457 (496)
Q Consensus 378 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p 457 (496)
.+|..++.|+|++.| ++..++..||++++|+|+.+++|+|..+.+++|.+|++ +++|++|++|+.+.|+|++.+|
T Consensus 327 ~~~~~~~~f~a~~~~---l~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~--~~~~~~l~~~d~~~v~~~~~~p 401 (434)
T 1zun_B 327 NVPQVSDAFDAMLVW---MAEEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLE--EGPASSLQLNEIGRVKVSLDAP 401 (434)
T ss_dssp SCCCEEEEEEEEEEE---CCSSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCC--CCCCSCBCTTCEEEEEEEEEEE
T ss_pred CCCCcccEEEEEEEE---eccccCCCCCEEEEEEcCCEEEEEEEEEeeeecccccc--ccCccEeCCCCEEEEEEEECCe
Confidence 888999999999999 44568999999999999999999999999999999987 4678999999999999999999
Q ss_pred EEeeeccCcCccceEEEEeC--CcEEEEEEEEE
Q 010985 458 ICTEKFADFAQLGRFTLRTE--GKTVAVGKVTE 488 (496)
Q Consensus 458 i~~e~~~~~~~lgrfilr~~--g~tva~G~V~~ 488 (496)
+|+++|.+++.+|||+|||. |+|||+|+|++
T Consensus 402 ~~~~~~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 402 IALDGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp EECCCTTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred EEEcccccCCccceEEEEECCCCcEEEEEEEeC
Confidence 99999999999999999975 89999999973
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=2.9e-61 Score=494.62 Aligned_cols=378 Identities=28% Similarity=0.436 Sum_probs=326.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++.++|+++||+|+|||||+++|+... ...|+..+...+.+|...+|+++|+|++.....+++.+
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 65 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKIL---------------AEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH---------------HHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChh---------------hhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC
Confidence 357899999999999999999997432 12243344444468888899999999999888898889
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccH
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
+.++|+|||||++|.+++..+++.+|++|+|||++.+.+ .|+++|+.++..+++|++|+|+||||+. + ++
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~vp~iivviNK~Dl~--~-~~ 135 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-------PQTREHLLLARQIGVEHVVVYVNKADAV--Q-DS 135 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCCEEEEEECGGGC--S-CH
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCCeEEEEEECcccC--C-CH
Confidence 999999999999999999999999999999999999864 6999999999999999888999999993 2 45
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCCh--hhHHHHHhc-cCCCCCCCCCCeEEEE
Q 010985 223 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG--PCLFEALDR-IEITPRDPNGPFRMPI 299 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g--~~L~~~l~~-l~~~~~~~~~p~~~~i 299 (496)
+.++.+.+++.++++..++. ...++++++||++|.|.. .++||.| ..|++.|.. ++.|.+..++|++++|
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~SA~~g~n~~------~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v 208 (397)
T 1d2e_A 136 EMVELVELEIRELLTEFGYK-GEETPIIVGSALCALEQR------DPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPV 208 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-TTTSCEEECCHHHHHTTC------CTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCC-cccCcEEEeehhhccccc------CCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEE
Confidence 67777888899999988875 235789999999999842 2689987 567777665 7878888889999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEec
Q 010985 300 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 375 (496)
Q Consensus 300 ~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 375 (496)
+++| ++.|+|++|+|.+|+|++||.|.+.|.+ ..++|++|+++++++++|.|||+|+++|+|++..++++|++|++
T Consensus 209 ~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~ 288 (397)
T 1d2e_A 209 ESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAK 288 (397)
T ss_dssp CEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEES
T ss_pred EEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeC
Confidence 9998 5889999999999999999999999975 78999999999999999999999999999999999999999999
Q ss_pred CCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEE
Q 010985 376 VAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 452 (496)
Q Consensus 376 ~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~ 452 (496)
++ ++.+++.|+|++.||+... +.++..||++++|+++.+++|+|. +. + .|++|++|+.+.|+|
T Consensus 289 ~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~------~------~~~~l~~~~~~~v~~ 354 (397)
T 1d2e_A 289 PG-SIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP------P------GKELAMPGEDLKLTL 354 (397)
T ss_dssp TT-SCCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------S------SCCCBCTTCEEEEEE
T ss_pred CC-CCCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec------C------CcccccCCCEEEEEE
Confidence 87 5677899999999965321 258999999999999999999987 31 1 256799999999999
Q ss_pred EECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcCCC
Q 010985 453 QVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 492 (496)
Q Consensus 453 ~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~~ 492 (496)
+|.+|+|++++ +||+||+.++|+|+|+|+++.+.
T Consensus 355 ~~~~p~~~~~~------~r~~lr~~~~ti~~G~i~~~~~~ 388 (397)
T 1d2e_A 355 ILRQPMILEKG------QRFTLRDGNRTIGTGLVTDTPAM 388 (397)
T ss_dssp EEEEEECCCTT------CEEEEEETTEEEEEEEEEECCCC
T ss_pred EECCeEEEccC------CeEEEEeCCeEEEEEEEeecccC
Confidence 99999999987 79999999999999999998764
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=1e-60 Score=492.19 Aligned_cols=384 Identities=29% Similarity=0.458 Sum_probs=326.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCc-cchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR-ESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~-~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
..++.++|+++||+|+|||||+++|++.. .+.|+ ..+...+.+|...+|+.+|+|++.....++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 71 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVA---------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE 71 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHH---------------HHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhh---------------hhcCccccccchhhccCCHHHHHcCCCEEeeeeEec
Confidence 35677999999999999999999997421 11232 222223468999999999999999888899
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~ 219 (496)
+.++.++|+|||||++|.+++.++++.+|++|+|+|++.+.+ .|+++|+.++..+++|++|+|+||+|+. +
T Consensus 72 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~~~l~~~~~~~ip~iivviNK~Dl~--~ 142 (405)
T 2c78_A 72 TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFMNKVDMV--D 142 (405)
T ss_dssp CSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-------HHHHHHHHHHHHTTCCCEEEEEECGGGC--C
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEECcccc--C
Confidence 999999999999999999999999999999999999999864 5999999999999999888999999993 2
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc---cCCCCCCCh-hhHHHHHhc-cCCCCCCCCCC
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD---KSLCPWWNG-PCLFEALDR-IEITPRDPNGP 294 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~---~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~p 294 (496)
+++.++.+.+++..+++.+++. ....+++++||++|.|+.+... ...++||.+ ..|++.|.. ++.|.+..+.|
T Consensus 143 -~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p 220 (405)
T 2c78_A 143 -DPELLDLVEMEVRDLLNQYEFP-GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKP 220 (405)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSC-TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSC
T ss_pred -cHHHHHHHHHHHHHHHHHhccc-ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCC
Confidence 4566777888899999988874 1247899999999998654321 113678876 457776665 77788888899
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcce
Q 010985 295 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 369 (496)
Q Consensus 295 ~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~---~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~ 369 (496)
++++|+++| ++.|++++|+|.+|+|++||.|.++|.+ ..++|++|+++++++++|.|||+|+++|+|++..++++
T Consensus 221 ~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~ 300 (405)
T 2c78_A 221 FLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300 (405)
T ss_dssp CEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCT
T ss_pred cEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCc
Confidence 999999998 4789999999999999999999999988 58999999999999999999999999999999999999
Q ss_pred eeEEecCCCCcccccEEEEEEEEcccc---ccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCc
Q 010985 370 GFVLSSVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGA 446 (496)
Q Consensus 370 G~vl~~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~ 446 (496)
|++|++++ ++.+++.|+|++.||+.. ++.++..||++++|+++.+++|+|. +. + .++++++|+
T Consensus 301 G~~l~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~------~------~~~~l~~~~ 366 (405)
T 2c78_A 301 GQVLAKPG-SITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP------P------GVEMVMPGD 366 (405)
T ss_dssp TCEEESTT-SSEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------T------TCCCBCTTC
T ss_pred eEEEEcCC-CCceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec------c------CccccCCCC
Confidence 99999988 567889999999996532 1258999999999999999999987 31 1 256799999
Q ss_pred EEEEEEEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcC
Q 010985 447 IVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 490 (496)
Q Consensus 447 ~~~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~ 490 (496)
.+.|+|+|.+|+|+++| +||+||+.|+|+|+|+|+++.
T Consensus 367 ~~~v~~~~~~p~~~~~~------~rf~lr~~~~ti~~G~i~~~~ 404 (405)
T 2c78_A 367 NVTFTVELIKPVALEEG------LRFAIREGGRTVGAGVVTKIL 404 (405)
T ss_dssp EEEEEEEEEEEEEECTT------CEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEEECceEEEccC------CEEEEEcCCeEEEEEEEEecc
Confidence 99999999999999987 799999999999999999875
No 11
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=8.2e-57 Score=495.79 Aligned_cols=380 Identities=29% Similarity=0.420 Sum_probs=310.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++.++|+++||+|+|||||+++|+.... +.|+..+...+.+|...+|+.+|+|++.....++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~---------------~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~ 356 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHH---------------HHSCC---------------------CCSCEEEEC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc---------------cccccccccccccccccccccCceeEEEEEEEEcC
Confidence 456789999999999999999999974321 12332222233678889999999999999989999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
.++.++|+|||||++|.+++.++++.+|++|||||++++.+ .|+++|+.++..+++|++|||+||||+. +
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-------~QTrEhL~ll~~lgIP~IIVVINKiDLv--~- 426 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLGRQVGVPYIIVFLNKCDMV--D- 426 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-------TTHHHHHHHHHHHTCSCEEEEEECCTTC--C-
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-------HHHHHHHHHHHHcCCCeEEEEEeecccc--c-
Confidence 99999999999999999999999999999999999999865 6999999999999999888999999994 2
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCCh-hhHHHHHhc-cCCCCCCCCCCeEEE
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 298 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~p~~~~ 298 (496)
++++++.+.+++..+++..++. ...++++++||++|.+- .++||.| ..|++.|.. ++.|.+..+.|++++
T Consensus 427 d~e~le~i~eEi~elLk~~G~~-~~~vp~IpvSAktG~ng-------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~p 498 (1289)
T 3avx_A 427 DEELLELVEMEVRELLSQYDFP-GDDTPIVRGSALKALEG-------DAEWEAKILELAGFLDSYIPEPERAIDKPFLLP 498 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSC-TTTCCEEECCSTTTTTC-------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEE
T ss_pred chhhHHHHHHHHHHHHHhcccc-ccceeEEEEEeccCCCC-------CccccccchhhHhHHhhhcCCCccccccceeee
Confidence 4567778888899999988874 23578999999999541 1358766 456666655 677777788999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEe
Q 010985 299 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 374 (496)
Q Consensus 299 i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 374 (496)
|+++| ++.|+|++|+|.+|+|++||.|.++|.+ ..++|++|+++++++++|.|||+|+++|+|++..++++|++|+
T Consensus 499 Id~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 499 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLA 578 (1289)
T ss_dssp CCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred ccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEe
Confidence 99998 5889999999999999999999999988 6899999999999999999999999999999999999999999
Q ss_pred cCCCCcccccEEEEEEEEcccc---ccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010985 375 SVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 451 (496)
Q Consensus 375 ~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~ 451 (496)
+++. +.+++.|+|++.|++.. ++.++..||++++|+++.+++|+|. +. ..+++|++|+.+.|+
T Consensus 579 ~~~~-~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~------------~~~~~L~~Gd~a~V~ 644 (1289)
T 3avx_A 579 KPGT-IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP------------EGVEMVMPGDNIKMV 644 (1289)
T ss_dssp STTS-CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC------------TTCCCBCTTCCCEEE
T ss_pred cCCC-CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-EC------------CCcccccCCCEEEEE
Confidence 9875 57789999999996532 1257999999999999999999987 21 125679999999999
Q ss_pred EEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcCCCC
Q 010985 452 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVS 493 (496)
Q Consensus 452 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~~~ 493 (496)
|+|.+|+|++++ +||+||+.|+|+|+|+|+++.++.
T Consensus 645 L~l~~Pi~ve~g------~RFiLRd~grTIG~G~V~~v~~~~ 680 (1289)
T 3avx_A 645 VTLIHPIAMDDG------LRFAIREGGRTVGAGVVAKVLSGA 680 (1289)
T ss_dssp EEEEEEEECCTT------CEEEEEETTEEEEEEEEEEECCCC
T ss_pred EEECceEEEccC------CEEEEEeCCeEEEEEEEeeechhh
Confidence 999999999986 799999999999999999987654
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=5.4e-58 Score=480.12 Aligned_cols=369 Identities=23% Similarity=0.390 Sum_probs=302.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
...+.++|+++||+|+|||||+++|+... ....+|...+|+++|+|++.....+++
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~------------------------~~~~~d~~~~e~~~GiTi~~~~~~~~~ 70 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIA------------------------STSAHDKLPESQKRGITIDIGFSAFKL 70 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCEEEE
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCC------------------------cccccccccccccCccEEecceEEEEE
Confidence 34567999999999999999999995221 123567778899999999999999999
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~ 220 (496)
+++.++|+|||||++|.+++..+++.+|++|||||+++|.. +|+++|+.++..+++|. |+|+||+|+.
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~ip~-IvviNK~Dl~---- 138 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK-------TQTGEHMLILDHFNIPI-IVVITKSDNA---- 138 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCB-CEEEECTTSS----
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCcc-------HHHHHHHHHHHHcCCCE-EEEEECCCcc----
Confidence 99999999999999999999999999999999999999854 69999999999999995 8999999993
Q ss_pred cHHHHHHHHHHHHHHHHhc-CCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEE
Q 010985 221 SKERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 299 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~-~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i 299 (496)
++++++++.+++..+++.. ++. ..+++|+||++|+|++++.+. |.+.+. ++...+..+.|+++++
T Consensus 139 ~~~~~~~~~~~l~~~l~~~~~~~---~~~ii~vSA~~g~gI~~L~~~----------L~~~i~-~~~~~~~~~~~~~~~v 204 (482)
T 1wb1_A 139 GTEEIKRTEMIMKSILQSTHNLK---NSSIIPISAKTGFGVDELKNL----------IITTLN-NAEIIRNTESYFKMPL 204 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSGG---GCCEEECCTTTCTTHHHHHHH----------HHHHHH-HSCCCCCSSSCCBCBC
T ss_pred cchhHHHHHHHHHHHHhhhcccc---cceEEEEECcCCCCHHHHHHH----------HHHhhc-Cccccccccccccccc
Confidence 3567788888899988877 654 568999999999999985331 222222 2322566778999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEE-ecC
Q 010985 300 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL-SSV 376 (496)
Q Consensus 300 ~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl-~~~ 376 (496)
+++| ++.|+|++|+|.+|.|++||.|.++|.+..++|++|+++++++++|.|||+|+++++|++..++++||+| +.+
T Consensus 205 ~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~ 284 (482)
T 1wb1_A 205 DHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKD 284 (482)
T ss_dssp SCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred eeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCC
Confidence 9998 5889999999999999999999999999999999999999999999999999999999988899999999 555
Q ss_pred CCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEE-EEeecCCCccccccceeecCCcEEEEEEEEC
Q 010985 377 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELL-HQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN 455 (496)
Q Consensus 377 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~-~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~ 455 (496)
+ ++++++.|+|++.|++. ...++..||++.+|+++.+++|+|..+. +++|.+++.. .+++|++|+.+.|+|+|.
T Consensus 285 ~-~~~~~~~~~a~v~~l~~-~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~---~~~~l~~g~~~~v~l~~~ 359 (482)
T 1wb1_A 285 T-KLQTVDKIVAKIKISDI-FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENI---ILNEVISGNEXYXAFELE 359 (482)
T ss_dssp C-CCCCEEEEEECCCCCSS-CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEE---ECCSSCCSSCCCEEEEEE
T ss_pred C-CCceeeEEEEEEEEecc-CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccc---cchhhcCCCEEEEEEEcC
Confidence 4 66788999999999542 1268999999999999999999999998 7888877542 256899999999999999
Q ss_pred ceEEeeeccCcCccceEEEEe---C---CcEEEEEEEEEcC
Q 010985 456 NSICTEKFADFAQLGRFTLRT---E---GKTVAVGKVTELP 490 (496)
Q Consensus 456 ~pi~~e~~~~~~~lgrfilr~---~---g~tva~G~V~~v~ 490 (496)
+|+|++++ +||+||+ . ++|+|+|+|+++.
T Consensus 360 ~pv~~~~~------~rfilr~~~~~~~~~~tvg~G~v~~~~ 394 (482)
T 1wb1_A 360 EKVLAEVG------DRVLITRLDLPPTTLRIXGHGLIEEFK 394 (482)
T ss_dssp EEECCCSS------CCCBEECTTSCTTSCCCCCBCCEEECC
T ss_pred ccEEecCC------CeEEEEECCCCccCceEeeEEEEEecc
Confidence 99999975 7999999 4 8999999999874
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=1.6e-54 Score=438.63 Aligned_cols=335 Identities=20% Similarity=0.297 Sum_probs=284.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++||+|+|||||+++|+ ++|+|++.....++++++.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 99999999999999999983 389999999999999999999
Q ss_pred EEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe-eccCCCCCccHHHH
Q 010985 147 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 225 (496)
Q Consensus 147 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN-K~D~~~~~~~~~~~ 225 (496)
|+|||||++|+++++++++.+|++||||| +.+.+ +|+++|+.++..+++|.+|+++| |||+ . .+.+
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~-------~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~----~~~~ 130 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLD-------AHTGECIIALDLLGFKHGIIALTRSDST-H----MHAI 130 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCC-------HHHHHHHHHHHHTTCCEEEEEECCGGGS-C----HHHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCc-------HHHHHHHHHHHHcCCCeEEEEEEeccCC-C----HHHH
Confidence 99999999999999999999999999999 87754 69999999999999996589999 9998 3 3445
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEe--ecccc---ccccccccccCCCCCCChhhHHHHHhccCCCCCC-CCCCeEEEE
Q 010985 226 DEIESKMTPFLKASGYNVKKDVQFLP--ISGLM---GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFRMPI 299 (496)
Q Consensus 226 ~~i~~~l~~~l~~~~~~~~~~~~~ip--iSa~~---g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~-~~~p~~~~i 299 (496)
+++.++++++++..++. .+++++ +||++ |.|++++.+. |.+.+.....+... ...|+++++
T Consensus 131 ~~~~~~i~~~l~~~~~~---~~~ii~~~~SA~~~~~g~gi~~L~~~----------l~~~~~~~~~~~~~~~~~p~r~~v 197 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQ---DWECISLNTNKSAKNPFEGVDELKAR----------INEVAEKIEAENAELNSLPARIFI 197 (370)
T ss_dssp HHHHHHHHHHTTTSTTT---TCEEEECCCCTTSSSTTTTHHHHHHH----------HHHHHHHHHHHHHHGGGSCCEEEE
T ss_pred HHHHHHHHHHHHhcCCC---ceEEEecccccccCcCCCCHHHHHHH----------HHhhccccccCCcccccccccccc
Confidence 66777888888776653 579999 99999 9998876432 44444332111112 345789999
Q ss_pred EEEEc--cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEecCC
Q 010985 300 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 377 (496)
Q Consensus 300 ~~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 377 (496)
.++|+ +.|++++|+|.+|+|++||+|.+.|.+..++|++|+++++++++|.|||+|+++|+|++..++++|++|++
T Consensus 198 ~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-- 275 (370)
T 2elf_A 198 DHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-- 275 (370)
T ss_dssp EEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES--
T ss_pred eeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC--
Confidence 99995 78999999999999999999999999999999999999999999999999999999998899999999998
Q ss_pred CCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECce
Q 010985 378 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 457 (496)
Q Consensus 378 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p 457 (496)
.+ +.++.|+|++.|++. +.++..||++++|+++.+++|+|..|.. |.+ ++ +.+.+|+.+.|+|+|.+|
T Consensus 276 ~~-~~~~~f~a~v~~l~~--~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g~~~~v~l~~~~p 343 (370)
T 2elf_A 276 KE-IVTTDYTLECTVSKF--TKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPGSTCVLELSGNKK 343 (370)
T ss_dssp CC-EEEEEEEEEEEECTT--SCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTTCEEEEEEEEEEE
T ss_pred CC-ceeEEEEEEEEEECC--CCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCCCEEEEEEEECcE
Confidence 45 889999999999542 3789999999999999999999998853 322 21 235699999999999999
Q ss_pred EEeeeccCcCccceEEEEeCC---cEEEEEEE
Q 010985 458 ICTEKFADFAQLGRFTLRTEG---KTVAVGKV 486 (496)
Q Consensus 458 i~~e~~~~~~~lgrfilr~~g---~tva~G~V 486 (496)
+|+++|. ||+||+.+ +|+|+|+|
T Consensus 344 i~~~~~~------rfilr~~~~~~~tig~G~~ 369 (370)
T 2elf_A 344 LAYSKQD------RFLLANLDLTQRFAAYGFS 369 (370)
T ss_dssp EEECTTS------CEEEECTTSSSCEEEEEEE
T ss_pred EEEeCCC------EEEEEECCCCCEEEEEEEe
Confidence 9999984 99999965 69999987
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=9.3e-53 Score=433.63 Aligned_cols=344 Identities=24% Similarity=0.389 Sum_probs=285.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++.++|+++||+|||||||+++|+. . ..|...+|+++|+|++..+..+.+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g---~-------------------------~~~~~~~e~~~giTi~~~~~~~~~ 57 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTG---V-------------------------WTDTHSEELRRGITIKIGFADAEI 57 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHT---C-------------------------CCC--CGGGGSCSSSCCEEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhC---C-------------------------ccccChhhhcCCcEEEEeeeeeec
Confidence 346789999999999999999999951 1 134456788899999887665544
Q ss_pred C-----------------------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHH
Q 010985 141 E-----------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 197 (496)
Q Consensus 141 ~-----------------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~ 197 (496)
. .+.++|+|||||++|.+++++++..+|++||||||+++.. .+||++|+.+
T Consensus 58 ~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~ 131 (410)
T 1kk1_A 58 RRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCP------RPQTREHLMA 131 (410)
T ss_dssp EECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSS------CHHHHHHHHH
T ss_pred ccccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCC------ChhHHHHHHH
Confidence 1 2789999999999999999999999999999999998741 2699999999
Q ss_pred HHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhH
Q 010985 198 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCL 277 (496)
Q Consensus 198 ~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L 277 (496)
+..++++++|+|+||+|+.. .+...+..+++..+++.... ..++++++||++|.|+++ |
T Consensus 132 ~~~~~~~~iivviNK~Dl~~----~~~~~~~~~~i~~~l~~~~~---~~~~~i~vSA~~g~gi~~--------------L 190 (410)
T 1kk1_A 132 LQIIGQKNIIIAQNKIELVD----KEKALENYRQIKEFIEGTVA---ENAPIIPISALHGANIDV--------------L 190 (410)
T ss_dssp HHHHTCCCEEEEEECGGGSC----HHHHHHHHHHHHHHHTTSTT---TTCCEEECBTTTTBSHHH--------------H
T ss_pred HHHcCCCcEEEEEECccCCC----HHHHHHHHHHHHHHHHhcCc---CCCeEEEeeCCCCCCHHH--------------H
Confidence 99999877999999999943 22333445566666665432 257899999999999987 5
Q ss_pred HHHHhc-cCCCCCCCCCCeEEEEEEEEc----------cCCeEEEEEEEEeeeecCCEEEEecCCc------------eE
Q 010985 278 FEALDR-IEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA------------QV 334 (496)
Q Consensus 278 ~~~l~~-l~~~~~~~~~p~~~~i~~~~~----------~~G~v~~g~v~~G~l~~g~~v~~~p~~~------------~~ 334 (496)
++.|.. ++.|.+..+.|++++|.++|+ ..|+|++|+|.+|+|++||.|.++|++. .+
T Consensus 191 ~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~ 270 (410)
T 1kk1_A 191 VKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITT 270 (410)
T ss_dssp HHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCcccccccccccccee
Confidence 555554 777777788999999999883 2688999999999999999999999752 68
Q ss_pred EEEEEEEcCccccccCCCCeEEEEec---cCCccCcceeeEEecCCCCcccccEEEEEEEEccccc-------cccccCC
Q 010985 335 KVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD-------NAIFTAG 404 (496)
Q Consensus 335 ~V~sI~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~-------~~~i~~G 404 (496)
+|++|+.+++++++|.|||+|++.++ ++...++++|+||++++.+++.++.|+|++.|++... ..++..|
T Consensus 271 ~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g 350 (410)
T 1kk1_A 271 EIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRK 350 (410)
T ss_dssp EEEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTT
T ss_pred EEEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCC
Confidence 99999999999999999999999986 5666889999999999988888899999999965320 2689999
Q ss_pred cEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEeeeccCcCccceEEEEe----CCcE
Q 010985 405 YKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT----EGKT 480 (496)
Q Consensus 405 ~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lgrfilr~----~g~t 480 (496)
|++++|+++.+++|+|..+. ++ .|+++|.+|+|++++ .||+||+ .++|
T Consensus 351 ~~~~~~~~t~~~~~~v~~~~--------------------~~--~~~l~~~~p~~~~~~------~~~~~~~~~~~~~r~ 402 (410)
T 1kk1_A 351 EVLLLNVGTARTMGLVTGLG--------------------KD--EIEVKLQIPVCAEPG------DRVAISRQIGSRWRL 402 (410)
T ss_dssp CEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEECCTT------CEEEEEEEETTEEEE
T ss_pred CEEEEEEcCCEEeEEEEEec--------------------CC--EEEEEeCCcEEecCC------CEEEEEEecCCCcEE
Confidence 99999999999999998763 12 688889999999987 5999999 5899
Q ss_pred EEEEEEE
Q 010985 481 VAVGKVT 487 (496)
Q Consensus 481 va~G~V~ 487 (496)
+|+|.|+
T Consensus 403 ig~G~i~ 409 (410)
T 1kk1_A 403 IGYGIIK 409 (410)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9999997
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=9.7e-53 Score=433.04 Aligned_cols=343 Identities=25% Similarity=0.406 Sum_probs=273.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe-
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 140 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~- 140 (496)
.++.++|+++||+|+|||||+++|+. . ..+...+|+++|+|++..+..+.+
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g---~-------------------------~~~~~~~e~~~giTi~~~~~~~~~~ 56 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTG---V-------------------------WTDRHSEELRRGISIRLGYADCEIR 56 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHS---C-------------------------CCCC-------CCCCCCEEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhC---C-------------------------ccccCcccccCCcEEEecccccccc
Confidence 34679999999999999999999951 1 134446778899999887655433
Q ss_pred --------------C--------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH
Q 010985 141 --------------E--------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 198 (496)
Q Consensus 141 --------------~--------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~ 198 (496)
. .+.++|+|||||++|.+++.+++..+|++|||+|++++.. .+||++|+..+
T Consensus 57 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~~ 130 (408)
T 1s0u_A 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCP------QPQTKEHLMAL 130 (408)
T ss_dssp ECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSS------CHHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCC------CchhHHHHHHH
Confidence 1 2789999999999999999999999999999999998741 26999999999
Q ss_pred HHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHH
Q 010985 199 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF 278 (496)
Q Consensus 199 ~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~ 278 (496)
..++++++|+|+||+|+...++..+.++ ++.++++.... ..++++++||++|.|+++ |+
T Consensus 131 ~~l~~~~iivv~NK~Dl~~~~~~~~~~~----~i~~~l~~~~~---~~~~~i~vSA~~g~gi~~--------------L~ 189 (408)
T 1s0u_A 131 EILGIDKIIIVQNKIDLVDEKQAEENYE----QIKEFVKGTIA---ENAPIIPISAHHEANIDV--------------LL 189 (408)
T ss_dssp HHTTCCCEEEEEECTTSSCTTTTTTHHH----HHHHHHTTSTT---TTCCEEEC------CHHH--------------HH
T ss_pred HHcCCCeEEEEEEccCCCCHHHHHHHHH----HHHHHHhhcCC---CCCeEEEeeCCCCCCHHH--------------HH
Confidence 9999877999999999954433333343 44445554322 257899999999999987 55
Q ss_pred HHHhc-cCCCCCCCCCCeEEEEEEEEc----------cCCeEEEEEEEEeeeecCCEEEEecCCc------------eEE
Q 010985 279 EALDR-IEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA------------QVK 335 (496)
Q Consensus 279 ~~l~~-l~~~~~~~~~p~~~~i~~~~~----------~~G~v~~g~v~~G~l~~g~~v~~~p~~~------------~~~ 335 (496)
+.|.. ++.|.++.+.|++++|.++|+ .+|+|++|+|.+|+|++||.|.++|++. .++
T Consensus 190 ~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~ 269 (408)
T 1s0u_A 190 KAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTK 269 (408)
T ss_dssp HHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred HHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeE
Confidence 55554 777778888999999999983 2688999999999999999999999742 689
Q ss_pred EEEEEEcCccccccCCCCeEEEEec---cCCccCcceeeEEecCCCCcccccEEEEEEEEccccc-------cccccCCc
Q 010985 336 VLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD-------NAIFTAGY 405 (496)
Q Consensus 336 V~sI~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~-------~~~i~~G~ 405 (496)
|++|+++++++++|.|||+|++++. +++..++++|+||++++.+++.++.|+|++.|++... +.++..||
T Consensus 270 v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~ 349 (408)
T 1s0u_A 270 IVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGE 349 (408)
T ss_dssp CCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTC
T ss_pred EEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCC
Confidence 9999999999999999999999986 6778899999999999988888899999999965320 26899999
Q ss_pred EEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEECceEEeeeccCcCccceEEEEe----CCcEE
Q 010985 406 KAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT----EGKTV 481 (496)
Q Consensus 406 ~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lgrfilr~----~g~tv 481 (496)
++++|+++.+++|+|..+. ++ .|+++|.+|+|++++ .||+||+ .++|+
T Consensus 350 ~~~~~~~t~~~~~~v~~~~--------------------~~--~~~~~~~~p~~~~~~------~~~~~~~~~~~~~r~i 401 (408)
T 1s0u_A 350 VLMLNIGTATTAGVITSAR--------------------GD--IADIKLKLPICAEIG------DRVAISRRVGSRWRLI 401 (408)
T ss_dssp EEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEECCTT------CEEEEEEECSSSEEEE
T ss_pred EEEEEEcCCEEEEEEEEec--------------------CC--EEEEEECCcEEecCC------CEEEEEEecCCCeEEE
Confidence 9999999999999998763 12 678889999999987 5999999 58999
Q ss_pred EEEEEE
Q 010985 482 AVGKVT 487 (496)
Q Consensus 482 a~G~V~ 487 (496)
|+|.|+
T Consensus 402 g~G~i~ 407 (408)
T 1s0u_A 402 GYGTIE 407 (408)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999986
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.4e-49 Score=408.91 Aligned_cols=356 Identities=22% Similarity=0.296 Sum_probs=278.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEE--
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF-- 138 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~-- 138 (496)
..++.++|+++|++|+|||||+++|+.....-. .| +...........+..++.+.+.....+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-------------LG---YAETNIGVCESCKKPEAYVTEPSCKSCGS 67 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-------------SE---EEEEEEEECTTSCTTTTEESSSCCGGGTC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccc-------------cC---ccccceeeccccccccceecccccccccc
Confidence 345679999999999999999999963211100 00 000000000111122333333221111
Q ss_pred ---EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 139 ---ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 139 ---~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
....+.++|+|||||++|.+++..+++.+|++|+|+|++.+.. ..|+++|+.++..++++++|+|+||+|+
T Consensus 68 ~~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~------~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 68 DDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP------QPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp CSCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC------cHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 1223789999999999999999999999999999999999851 2699999999999998669999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhc-cCCCCCCCCCC
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGP 294 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~-l~~~~~~~~~p 294 (496)
. +.+...+..+++.++++..+.. .++++++||++|.|+++ |++.|.. ++.+.+..+.|
T Consensus 142 ~----~~~~~~~~~~~i~~~l~~~~~~---~~~ii~vSA~~g~gi~~--------------L~~~l~~~l~~~~~~~~~~ 200 (403)
T 3sjy_A 142 V----SKEEALSQYRQIKQFTKGTWAE---NVPIIPVSALHKINIDS--------------LIEGIEEYIKTPYRDLSQK 200 (403)
T ss_dssp S----CHHHHHHHHHHHHHHHTTSTTT---TCCEEECBTTTTBSHHH--------------HHHHHHHHSCCCCCCTTSC
T ss_pred c----chHHHHHHHHHHHHHHHhhCCC---CCEEEEEECCCCcChHH--------------HHHHHHHhCCCCCCCCCCC
Confidence 3 2344555666777777666543 57899999999999987 5555554 77777888899
Q ss_pred eEEEEEEEEc--c--------CCeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEEcCccccccCCC
Q 010985 295 FRMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNKA------------QVKVLAIYCDDNRVRHAGPG 352 (496)
Q Consensus 295 ~~~~i~~~~~--~--------~G~v~~g~v~~G~l~~g~~v~~~p~~~------------~~~V~sI~~~~~~v~~a~aG 352 (496)
++++|.++|. + +|+|++|+|.+|+|++||+|.++|++. .++|++|+++++++++|.||
T Consensus 201 ~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G 280 (403)
T 3sjy_A 201 PVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPG 280 (403)
T ss_dssp CEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSS
T ss_pred cEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCC
Confidence 9999999883 2 789999999999999999999999874 58999999999999999999
Q ss_pred CeEEEEec---cCCccCcceeeEEecCCCCcccccEEEEEEEEcccc-------ccccccCCcEEEEEEEeEEEEEEEEE
Q 010985 353 ENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAGYKAVLHIHAVVEECEIVE 422 (496)
Q Consensus 353 ~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~G~~~~~~~~~~~~~~~i~~ 422 (496)
|+|+++|+ +++..++++||||++++.+|+.++.|+|++.||+.. ...++..|+++.+|+++.++.|+|..
T Consensus 281 ~~v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~ 360 (403)
T 3sjy_A 281 GLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTS 360 (403)
T ss_dssp SCEEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEE
T ss_pred CEEEEEeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEE
Confidence 99999986 677789999999999998888899999999997642 14689999999999999999999987
Q ss_pred EEEEeecCCCccccccceeecCCcEEEEEEEECceEEeeeccCcCccc-eEEE-EeCC---cEEEEEEEE
Q 010985 423 LLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLG-RFTL-RTEG---KTVAVGKVT 487 (496)
Q Consensus 423 i~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lg-rfil-r~~g---~tva~G~V~ 487 (496)
+. ++ .++++|.+|+|++.. . ||+| |+.+ +++|+|.|+
T Consensus 361 ~~--------------------~~--~~~~~l~~p~~~~~g------~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 361 VK--------------------KD--EIEVELRRPVAVWSN------NIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp EC--------------------SS--EEEEEEEEEEECCSS------SCEEEEEEEETTEEEEEEEEEEE
T ss_pred ec--------------------Cc--eEEEEeCCcEeeccC------CEEEEEEEEeCCcEEEEEEEEEE
Confidence 52 11 588899999999875 6 8998 5544 899999985
No 17
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=321.40 Aligned_cols=199 Identities=48% Similarity=0.818 Sum_probs=187.6
Q ss_pred CCCCeEEEEEEEEccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcCccccccCCCCeEEEEeccCCccCccee
Q 010985 291 PNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 370 (496)
Q Consensus 291 ~~~p~~~~i~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G 370 (496)
.++||||+|+++|++.|++++|+|.+|+|++||.|.++|++..++|++|+++++++++|.|||+|+++|+|++..++++|
T Consensus 3 ~~~p~rl~v~~v~~g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~rG 82 (204)
T 3e1y_E 3 LGSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPG 82 (204)
T ss_dssp ----CBEEEEEEEESSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCCTT
T ss_pred CCCCEEEEEEEEEcCCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEE
Q 010985 371 FVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 449 (496)
Q Consensus 371 ~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~g~~~~ 449 (496)
++|++++++++.++.|+|++.| +++ ++|..||++++|+|+.+++|+|.+|.+++|.+||+..+.+|++|++|+.+.
T Consensus 83 ~vl~~~~~~~~~~~~f~a~v~~---l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~ 159 (204)
T 3e1y_E 83 FILCDPNNLCHSGRTFDAQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCI 159 (204)
T ss_dssp CEEBCSSSCCCCCSEEEEEEEC---CSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEE
T ss_pred eEEECCCCCCchhEEEEEEEEE---eCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEE
Confidence 9999999888899999999999 445 579999999999999999999999999999999998888899999999999
Q ss_pred EEEEECceEEeeeccCcCccceEEEEeCCcEEEEEEEEEcCCC
Q 010985 450 CRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 492 (496)
Q Consensus 450 v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~v~~~ 492 (496)
|+|++.+|+|+|+|++|+.+|||+|||+|+|+|+|+|+++.+.
T Consensus 160 v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 160 ARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp EEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred EEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 9999999999999999999999999999999999999998765
No 18
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=4.8e-37 Score=325.28 Aligned_cols=277 Identities=19% Similarity=0.208 Sum_probs=203.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.+||+|+||+|||||||+.+||+.+|.+...... +.|. ...+.+||+.+.|++||+|+......++|+++
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V-------~~~~--~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~ 100 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSV-------KARK--AARHATSDWMAMERERGISVTTSVMQFPYRDR 100 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHH-------HHC----------------------CTTTEEEEEETTE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCccccccee-------ecCc--cccccccCChHHHHHCCCcEeeceEEEEECCE
Confidence 46899999999999999999999999988653311 1110 11246799999999999999999999999999
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHH
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.|+|||||||.||...+.++++.+|+||+||||.+|+. .||+..++.+...++| .|++|||||++.+++
T Consensus 101 ~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~-------~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad~--- 169 (548)
T 3vqt_A 101 VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVE-------AQTRKLMDVCRMRATP-VMTFVNKMDREALHP--- 169 (548)
T ss_dssp EEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSCCCCH---
T ss_pred EEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcc-------cccHHHHHHHHHhCCc-eEEEEecccchhcch---
Confidence 99999999999999999999999999999999999964 8999999999999999 678999999976653
Q ss_pred HHHHHHHHHHHHHHh-----------------------------------------------------------------
Q 010985 224 RYDEIESKMTPFLKA----------------------------------------------------------------- 238 (496)
Q Consensus 224 ~~~~i~~~l~~~l~~----------------------------------------------------------------- 238 (496)
.++.+++++.|..
T Consensus 170 --~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (548)
T 3vqt_A 170 --LDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMD 247 (548)
T ss_dssp --HHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHH
T ss_pred --hHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhH
Confidence 2333333333310
Q ss_pred ------cCCC-------ccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCC---------CCCCCeE
Q 010985 239 ------SGYN-------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---------DPNGPFR 296 (496)
Q Consensus 239 ------~~~~-------~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~---------~~~~p~~ 296 (496)
.+.. ...-+|++..||+++.|+..| |...++.+|.|.. +.+.||.
T Consensus 248 ~~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~L-------------Ld~iv~~~PsP~~~~~~~~~~~~~~~p~~ 314 (548)
T 3vqt_A 248 LALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREM-------------LDMFVEFAPGPQPRPAATRVVEPGEEAFT 314 (548)
T ss_dssp HHHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCSCCEEBSSSEECTTCSSCE
T ss_pred HHHHhhccCchhHHHHHhCCcceeeecccccCcCHHHH-------------HHHHHHhCCCCCCccccccccCCCCcCce
Confidence 0000 011357888899999999874 3345566777643 2367888
Q ss_pred EEEEEEEc-----cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCc
Q 010985 297 MPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDI 367 (496)
Q Consensus 297 ~~i~~~~~-----~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i 367 (496)
..++.++. ..|.+.++||+||+|+.|+.|++...++..+|..+... +.++++|.|||+|++ .|++ ++
T Consensus 315 a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl~--~~ 390 (548)
T 3vqt_A 315 GVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGI--PNHG--TI 390 (548)
T ss_dssp EEEEEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEE--ECSS--CC
T ss_pred EEEEEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEe--cCCc--cC
Confidence 88888763 47999999999999999999999888888898888775 468999999999985 5554 58
Q ss_pred ceeeEEecCCCC
Q 010985 368 LSGFVLSSVAKP 379 (496)
Q Consensus 368 ~~G~vl~~~~~~ 379 (496)
+.|++|++.+.+
T Consensus 391 ~~GDTl~~~~~~ 402 (548)
T 3vqt_A 391 KIGDTFTESKEV 402 (548)
T ss_dssp CTTCEEESSSSC
T ss_pred ccCCEecCCCCc
Confidence 899999987643
No 19
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=3e-36 Score=320.01 Aligned_cols=268 Identities=24% Similarity=0.378 Sum_probs=202.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~- 141 (496)
+..+||+|+||+|||||||+++|++.+|.+..+.+ ..+++|..+.|+++|+|+......+.+.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGITI~~~~~~~~~~~ 67 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK----------------REQLLDTLDVERERGITVKMQAVRMFYKA 67 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEEc
Confidence 45789999999999999999999998888765431 2567899999999999999888777664
Q ss_pred ----CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 010985 142 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 142 ----~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~ 217 (496)
.+.++|||||||.+|...+.++++.+|++|||||+++|.. .|+.+++..+...++| +|+|+||+|++.
T Consensus 68 ~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~-------~qt~~~~~~a~~~~ip-iIvviNKiDl~~ 139 (600)
T 2ywe_A 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIE-------AQTVANFWKAVEQDLV-IIPVINKIDLPS 139 (600)
T ss_dssp TTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCC-------HHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence 3789999999999999999999999999999999999853 6999999999999999 899999999954
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEE
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 297 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~ 297 (496)
.+ .+++.+++... +++. ..+++++||++|.|++++ |...++.++.|..+.+.|+++
T Consensus 140 a~-----~~~v~~el~~~---lg~~---~~~vi~vSAktg~GI~~L-------------le~I~~~lp~p~~~~~~pl~~ 195 (600)
T 2ywe_A 140 AD-----VDRVKKQIEEV---LGLD---PEEAILASAKEGIGIEEI-------------LEAIVNRIPPPKGDPQKPLKA 195 (600)
T ss_dssp CC-----HHHHHHHHHHT---SCCC---GGGCEECBTTTTBSHHHH-------------HHHHHHHSCCCCCCTTSCCEE
T ss_pred cC-----HHHHHHHHHHh---hCCC---cccEEEEEeecCCCchHH-------------HHHHHHhcccccccccCCcce
Confidence 33 22333444333 3443 235899999999999984 334567788888888899999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc---CccccccCCCCeEEEEeccC-CccCcceee
Q 010985 298 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGF 371 (496)
Q Consensus 298 ~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~---~~~v~~a~aG~~v~~~l~~~-~~~~i~~G~ 371 (496)
.|.+++ +..|++++|+|.+|+|++||.|.++|.+...+|++|..+ +.+++++.|||++.+. .|+ ...++++||
T Consensus 196 lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GD 274 (600)
T 2ywe_A 196 LIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGD 274 (600)
T ss_dssp EEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTC
T ss_pred eEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCC
Confidence 998887 467999999999999999999999999999999999875 3678999999987764 555 346799999
Q ss_pred EEecCCCC
Q 010985 372 VLSSVAKP 379 (496)
Q Consensus 372 vl~~~~~~ 379 (496)
+|+.++.+
T Consensus 275 tl~~~~~~ 282 (600)
T 2ywe_A 275 TITHAKNP 282 (600)
T ss_dssp EEEESSSC
T ss_pred EEEeCCCc
Confidence 99987754
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=4.3e-35 Score=311.84 Aligned_cols=267 Identities=22% Similarity=0.357 Sum_probs=197.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 141 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-- 141 (496)
..+||+|+||+|||||||+++|++.+|.+..+.+ ..+++|..+.|+++|+|+......+.+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~~~~~~~~~ 66 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM----------------EAQVLDSMDLERERGITIKAQSVTLDYKAS 66 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEecC
Confidence 5689999999999999999999998888765431 2567888999999999999888888775
Q ss_pred ---CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 142 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 142 ---~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
++.++|||||||.+|...+.++++.+|++|+|||+++|.. .|+.+++..+...++| +|+|+||+|++..
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~-------~qt~~~~~~~~~~~ip-iIvViNKiDl~~a 138 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE-------AQTLANCYTAMEMDLE-VVPVLNKIDLPAA 138 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCC-------THHHHHHHHHHHTTCE-EEEEEECTTSTTC
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEeeeccCcccc
Confidence 3889999999999999999999999999999999999853 6999999999999998 8899999999543
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEE
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 298 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~ 298 (496)
+ .+++.+++... +++. ..+++++||++|.|++++ |...++.++.|..+.+.|+++.
T Consensus 139 ~-----~~~v~~ei~~~---lg~~---~~~vi~vSAktg~GI~~L-------------l~~I~~~lp~p~~~~~~p~~al 194 (599)
T 3cb4_D 139 D-----PERVAEEIEDI---VGID---ATDAVRCSAKTGVGVQDV-------------LERLVRDIPPPEGDPEGPLQAL 194 (599)
T ss_dssp C-----HHHHHHHHHHH---TCCC---CTTCEEECTTTCTTHHHH-------------HHHHHHHSCCCCCCTTSCCEEE
T ss_pred c-----HHHHHHHHHHH---hCCC---cceEEEeecccCCCchhH-------------HHHHhhcCCCccccccCCceee
Confidence 2 23333444433 3443 235899999999999884 3345567888888888999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc---CccccccCCCCeEEEEeccC-CccCcceeeE
Q 010985 299 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGFV 372 (496)
Q Consensus 299 i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~---~~~v~~a~aG~~v~~~l~~~-~~~~i~~G~v 372 (496)
|.+++ +..|.+++|+|.+|+|+.||.+.+.|.+...+|.+|... +.+++++.||+++.+ +.|+ ...++++||+
T Consensus 195 I~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GDt 273 (599)
T 3cb4_D 195 IIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGDT 273 (599)
T ss_dssp EEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTCE
T ss_pred eeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCCE
Confidence 99886 568999999999999999999999999998899999875 467899999997765 4455 3467899999
Q ss_pred EecCCCC
Q 010985 373 LSSVAKP 379 (496)
Q Consensus 373 l~~~~~~ 379 (496)
|++++.+
T Consensus 274 l~~~~~~ 280 (599)
T 3cb4_D 274 LTLARNP 280 (599)
T ss_dssp EEESSSC
T ss_pred eeecCCc
Confidence 9987754
No 21
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.9e-34 Score=313.96 Aligned_cols=275 Identities=24% Similarity=0.272 Sum_probs=197.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+.+||+|+||+|||||||+.+||+.+|.+.... +. ......||+.+.|++||+|+......+.|.
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g------------~v-~~~~~~~D~~~~E~eRGITI~s~~~s~~~~ 76 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLG------------EV-HDGAATTDWMVQEQERGITITSAAVTTFWK 76 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEEC
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCc------------ee-cCCCccCCChHHHHHcCCeEEeeeEEEEec
Confidence 35689999999999999999999999888654311 00 012457999999999999999999998885
Q ss_pred -------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 142 -------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 142 -------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
++.++|||||||.||..++.++++.+|+||+||||.+|+. .||+..++.+...++| .|+||||||
T Consensus 77 ~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~-------~qT~~v~~~a~~~~lp-~i~~iNKiD 148 (709)
T 4fn5_A 77 GSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE-------PQSETVWRQANKYGVP-RIVYVNKMD 148 (709)
T ss_dssp CTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHHTCC-EEEEEECSS
T ss_pred cCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eEEEEcccc
Confidence 5899999999999999999999999999999999999975 7999999999999999 788999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHh--------------------------------------------------------
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKA-------------------------------------------------------- 238 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~-------------------------------------------------------- 238 (496)
+...++ ..+.+++...+..
T Consensus 149 r~~a~~-----~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 223 (709)
T 4fn5_A 149 RQGANF-----LRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRS 223 (709)
T ss_dssp STTCCH-----HHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHH
T ss_pred ccCccH-----HHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHH
Confidence 965542 2222222222210
Q ss_pred --------------------cCCC-------------ccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccC
Q 010985 239 --------------------SGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE 285 (496)
Q Consensus 239 --------------------~~~~-------------~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~ 285 (496)
..+. ...-.|++..||+++.|+..+ |...++.+|
T Consensus 224 ~~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~l-------------Ld~i~~~lP 290 (709)
T 4fn5_A 224 SMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLV-------------LDAVIDYLP 290 (709)
T ss_dssp HHHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHH-------------HHHHHHHSC
T ss_pred HHHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHH-------------HHHHHhhCC
Confidence 0000 012346777788888887763 333556677
Q ss_pred CCC--------------------CCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc-
Q 010985 286 ITP--------------------RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD- 342 (496)
Q Consensus 286 ~~~--------------------~~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~- 342 (496)
.|. .+.+.|+.+.|.++. +..|.+.++||+||+|+.||+|+....++..+|..+...
T Consensus 291 sP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~ 370 (709)
T 4fn5_A 291 APTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMH 370 (709)
T ss_dssp CTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCC
T ss_pred CCcccccccccCCccccccccccCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEee
Confidence 763 345789999999887 457999999999999999999998877777788888764
Q ss_pred ---CccccccCCCCeEEEEeccCCccCcceeeEEecCCCC
Q 010985 343 ---DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 379 (496)
Q Consensus 343 ---~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~ 379 (496)
..++++|.||++|+ +.|++ +++.|++|++.+.+
T Consensus 371 g~~~~~v~~~~aGdIv~--i~Gl~--~~~~gdTl~~~~~~ 406 (709)
T 4fn5_A 371 ANQREEIKEVRAGDIAA--LIGMK--DVTTGDTLCSIEKP 406 (709)
T ss_dssp SSCCCEESEECTTCEEE--ECSCS--SCCTTCEEECSSSC
T ss_pred cceeeEeeeecCCCeee--ecCCC--cCccCCEecCCCcc
Confidence 57899999999998 56774 58899999987643
No 22
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=1.6e-36 Score=327.58 Aligned_cols=274 Identities=22% Similarity=0.303 Sum_probs=213.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.+||+|+||+|||||||+.+||+.+|.+.... +. -..+..||+.+.|++||+|+......|.|+++
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g------------~v-~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~ 67 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELG------------SV-DKGTTRTDNTLLERQRGITIQTGITSFQWENT 67 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCS------------SC-CCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCcccc------------cc-ccCCcccCCcHHHHhCCCcEEeeeEEEEECCE
Confidence 368999999999999999999999999887532 11 12346799999999999999999999999999
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHH
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.|+|||||||.||..++.++++.+|+||+||||.+|+. +||+.+++++...++| .|++|||||++..++. .
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~-------~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~-~ 138 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQ-------AQTRILFHALRKMGIP-TIFFINKIDQNGIDLS-T 138 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTC-------SHHHHHHHHHHHHTCS-CEECCEECCSSSCCSH-H
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-eEEEEeccccccCCHH-H
Confidence 99999999999999999999999999999999999964 8999999999999999 5789999999776643 2
Q ss_pred HHHHHHHHH--------------------------------------HHHHHhcCCC-------------ccCCeeEEee
Q 010985 224 RYDEIESKM--------------------------------------TPFLKASGYN-------------VKKDVQFLPI 252 (496)
Q Consensus 224 ~~~~i~~~l--------------------------------------~~~l~~~~~~-------------~~~~~~~ipi 252 (496)
.++++.+.+ ..++....+. ...-.|++..
T Consensus 139 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 218 (638)
T 3j25_A 139 VYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHG 218 (638)
T ss_dssp HHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccc
Confidence 233332211 0111110000 0112477888
Q ss_pred ccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecC
Q 010985 253 SGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN 330 (496)
Q Consensus 253 Sa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~ 330 (496)
||+++.|+..+ |...++.+|.|....+.||...|.++. +..|.+.++||+||+|+.||.|.+...
T Consensus 219 Sa~~~~Gv~~L-------------Ld~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~ 285 (638)
T 3j25_A 219 SAKSNIGIDNL-------------IEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK 285 (638)
T ss_dssp CSTTCCSHHHH-------------HHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC
T ss_pred ccccCCCchhH-------------hhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC
Confidence 99999998874 333456788888777889999888876 467999999999999999999987655
Q ss_pred CceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceeeEEecCCC
Q 010985 331 KAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 378 (496)
Q Consensus 331 ~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 378 (496)
+ ..+|..+... ..++++|.||++|++ .+ ..++.|+++++...
T Consensus 286 ~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g---~~~~~~~tl~d~~~ 331 (638)
T 3j25_A 286 E-KIKVTEMYTSINGELCKIDRAYSGEIVIL--QN---EFLKLNSVLGDTKL 331 (638)
T ss_dssp C-CSSBCCCCSSCCCCBSCCCTTBCCCCSCC--CS---SSCSSEECSSSSSS
T ss_pred c-ceeEEeeecccccccccccccccceEEEE--ec---cccccCceecCCCC
Confidence 4 3456665543 568899999999875 33 45677888887653
No 23
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=1.6e-33 Score=296.72 Aligned_cols=279 Identities=19% Similarity=0.210 Sum_probs=212.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.++|+|+||+|||||||+++|++..|.+.....-. .++ ......+|..+.|+.+|+|++.....+.+.++
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~-------~~~--~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 82 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIK-------SRK--AARHATSDWMELEKQRGISVTTSVMQFPYKDY 82 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHH-------TC------CCHHHHHHHHHHHCCSSSSSEEEEEETTE
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeee-------ccc--cccceecccchhhhcCCeeEEEeEEEEEeCCE
Confidence 468999999999999999999999988874332110 000 01123456678888999999999999999999
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHH
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.++|+|||||.+|...+.++++.+|++|+|+|++.+.. .++..++..+...++| +|+|+||+|+...+ ..+
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~-------~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~-~~~ 153 (528)
T 3tr5_A 83 LINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVE-------PRTIKLMEVCRLRHTP-IMTFINKMDRDTRP-SIE 153 (528)
T ss_dssp EEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHHHHHTTTCC-EEEEEECTTSCCSC-HHH
T ss_pred EEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEeCCCCcccc-HHH
Confidence 99999999999999999999999999999999999853 6889999999999999 88999999995443 222
Q ss_pred HHHHHHHHHHHH-------------------------------------------------------------HH-----
Q 010985 224 RYDEIESKMTPF-------------------------------------------------------------LK----- 237 (496)
Q Consensus 224 ~~~~i~~~l~~~-------------------------------------------------------------l~----- 237 (496)
.++++.+.+... +.
T Consensus 154 ~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~ 233 (528)
T 3tr5_A 154 LLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELV 233 (528)
T ss_dssp HHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchh
Confidence 333333222100 00
Q ss_pred -hc--C-----CCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCC---------CCCCeEEEEE
Q 010985 238 -AS--G-----YNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGPFRMPII 300 (496)
Q Consensus 238 -~~--~-----~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~---------~~~p~~~~i~ 300 (496)
.. . +.....+|++++||++|.|+.++ |..+++.+|.|... .+.||...|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~L-------------ld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VF 300 (528)
T 3tr5_A 234 KGASHPFEREGYLKGELTPIFFGSAINNFGVGEL-------------LDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVF 300 (528)
T ss_dssp HHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEE
T ss_pred hhhhhHHHHHHHhcCceeEEEeccccCCccHHHH-------------HHHHHHhCCCCCcccccceeeCCCcccceeEEE
Confidence 00 0 00011248899999999999985 23344556665432 2578999898
Q ss_pred EEEc-----cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceee
Q 010985 301 DKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 371 (496)
Q Consensus 301 ~~~~-----~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 371 (496)
++.. .+|+++++||.||+|+.||.|++.+.++..+|.++... +.++++|.|||+|++ .++ .+++.||
T Consensus 301 Ki~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~--~~l--~~~~~GD 376 (528)
T 3tr5_A 301 KIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGL--HNH--GTIQIGD 376 (528)
T ss_dssp EEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEE--EES--SSCCTTC
T ss_pred EEecccCccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEE--cCC--CCCccCC
Confidence 8752 67999999999999999999999999999999998763 678999999999985 444 3588999
Q ss_pred EEecCC
Q 010985 372 VLSSVA 377 (496)
Q Consensus 372 vl~~~~ 377 (496)
+|++..
T Consensus 377 tl~~~~ 382 (528)
T 3tr5_A 377 TFTQGE 382 (528)
T ss_dssp EEESSC
T ss_pred EEcCCC
Confidence 999743
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=5.5e-32 Score=294.75 Aligned_cols=274 Identities=23% Similarity=0.248 Sum_probs=214.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....+||+|+||+|||||||+++|++.+|.+.... .. -...+++|+.+.|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g------------~v-~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~ 73 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG------------EV-HDGAATMDWMEQEQERGITITSAATTAFWS 73 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc------------cc-CCCceeecChhhHHhcCceeeeceEEEEEC
Confidence 34578999999999999999999998877665321 00 012467888899999999999998888888
Q ss_pred C-------eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 142 T-------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 142 ~-------~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
+ +.++|||||||.+|...+.++++.+|++|+|||++.+.. .|+.+++..+...++| +++|+||+|
T Consensus 74 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~qt~~~~~~~~~~~ip-~ilviNKiD 145 (704)
T 2rdo_7 74 GMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ-------PQSETVWRQANKYKVP-RIAFVNKMD 145 (704)
T ss_pred CccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 7 999999999999999999999999999999999999853 6899999999889999 788999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcC--------------------------CC--------------------------
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASG--------------------------YN-------------------------- 242 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~--------------------------~~-------------------------- 242 (496)
+...+ ++++.++++..+.... |.
T Consensus 146 ~~~~~-----~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 220 (704)
T 2rdo_7 146 RMGAN-----FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQ 220 (704)
T ss_pred ccccc-----HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHH
Confidence 95443 3333444433332100 00
Q ss_pred -------------------------------------ccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccC
Q 010985 243 -------------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE 285 (496)
Q Consensus 243 -------------------------------------~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~ 285 (496)
...-+|++..||++|.|+..+ |...++.+|
T Consensus 221 ~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~L-------------Ld~i~~~lP 287 (704)
T 2rdo_7 221 NLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAM-------------LDAVIDYLP 287 (704)
T ss_pred HHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHH-------------HHHHHHHCC
Confidence 001256788888888888764 223445566
Q ss_pred CCCC--------------------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc-
Q 010985 286 ITPR--------------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD- 342 (496)
Q Consensus 286 ~~~~--------------------~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~- 342 (496)
+|.. +.+.||.+.|++++ +..|++++|||+||+|+.||.|+..+.++..+|.+|...
T Consensus 288 sP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~ 367 (704)
T 2rdo_7 288 SPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMH 367 (704)
T ss_pred ChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEe
Confidence 6532 25679999999988 468999999999999999999999998888999999864
Q ss_pred ---CccccccCCCCeEEEEeccCCccCcceeeEEecCCC
Q 010985 343 ---DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 378 (496)
Q Consensus 343 ---~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 378 (496)
+.++++|.||++|++. |++ ++++|++|++.+.
T Consensus 368 g~~~~~v~~~~aGdIv~i~--gl~--~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 368 ANKREEIKEVRAGDIAAAI--GLK--DVTTGDTLCDPDA 402 (704)
T ss_pred CCCceEcceeCCCCEEEEe--Ccc--cCccCCEEeCCCc
Confidence 5789999999999974 664 4799999998663
No 25
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=2.5e-32 Score=287.93 Aligned_cols=275 Identities=19% Similarity=0.225 Sum_probs=185.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+|+||+|||||||+++|++..+.+....... .+ . .....++|+.+.|+.+|+|++.....+.+.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~-------~~-~-~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~ 81 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVK-------GR-G-SNQHAKSDWMEMEKQRGISITTSVMQFPYHD 81 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETT
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceee-------cC-c-cccceeeccchhcccCCcceeeeEEEEEECC
Confidence 3568999999999999999999997777654321000 00 0 0013467888899999999999999999999
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccH
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
+.++|+|||||.+|...+.+++..+|++|+|+|+..+.. .++++++..+...++| +++|+||+|+...+ ..
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~-------~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~-~~ 152 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE-------DRTRKLMEVTRLRDTP-ILTFMNKLDRDIRD-PM 152 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHHHHTTTTCC-EEEEEECTTSCCSC-HH
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch-------HHHHHHHHHHHHcCCC-EEEEEcCcCCcccc-HH
Confidence 999999999999999999999999999999999999853 6899999988888999 88999999995443 12
Q ss_pred HHHHHHHHHHHHHHHhcCCC------------------------------------------------------------
Q 010985 223 ERYDEIESKMTPFLKASGYN------------------------------------------------------------ 242 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~------------------------------------------------------------ 242 (496)
++.+++...+......
T Consensus 153 ----~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~ 228 (529)
T 2h5e_A 153 ----ELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLR 228 (529)
T ss_dssp ----HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHH
T ss_pred ----HHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhh
Confidence 2333333333210000
Q ss_pred -------------------ccCCeeEEeeccccccccccccccCCCCCCChhhHHHHH-hccCCCCCC---------CCC
Q 010985 243 -------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEAL-DRIEITPRD---------PNG 293 (496)
Q Consensus 243 -------------------~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l-~~l~~~~~~---------~~~ 293 (496)
.....|+++.||++|.|+.. |++.+ +.+|+|... .+.
T Consensus 229 e~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~--------------LLd~i~~~~P~P~~~~~~~~~~~~~~~ 294 (529)
T 2h5e_A 229 DELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDH--------------MLDGLVEWAPAPMPRQTDTRTVEASED 294 (529)
T ss_dssp HHHHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHH--------------HHHHHHHHSCSSCCEEBSSCEECTTCC
T ss_pred cccchhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHH--------------HHHHHHHhCCCCCcccccccccCCCCC
Confidence 00012344444444444443 55544 445665431 146
Q ss_pred CeEEEEEEEEc-----cCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCc
Q 010985 294 PFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEE 364 (496)
Q Consensus 294 p~~~~i~~~~~-----~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~ 364 (496)
||...|+.+.. .+|++++|||.||+|+.||.|++.+.++..+|.+|+.+ ++++++|.|||+|++ .++
T Consensus 295 ~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~~l-- 370 (529)
T 2h5e_A 295 KFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL--HNH-- 370 (529)
T ss_dssp SCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEE--CCS--
T ss_pred CeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEE--ecc--
Confidence 88888887742 47999999999999999999999999999999999975 679999999999985 554
Q ss_pred cCcceeeEEecCC
Q 010985 365 EDILSGFVLSSVA 377 (496)
Q Consensus 365 ~~i~~G~vl~~~~ 377 (496)
.+++.||+|++++
T Consensus 371 ~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 371 GTIQIGDTFTQGE 383 (529)
T ss_dssp SCCCTTCEEESSC
T ss_pred CCCccCCEeecCC
Confidence 4588899999865
No 26
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.98 E-value=8e-34 Score=297.75 Aligned_cols=255 Identities=26% Similarity=0.337 Sum_probs=196.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe-CC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~ 142 (496)
+.++|+++||+|+|||||+++|+...- .....+|+|++.....+.+ .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-------------------------------~~~~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-------------------------------AAMEAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-------------------------------HHSSSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccccCCceeEEEeEEEEEeCCC
Confidence 457899999999999999999963210 1123478999998888877 57
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccH
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 222 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~ 222 (496)
..++|+|||||++|...+.++++.+|++|||+|++++.+ +|+.+++..+...++| +|+|+||+|++..++..
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~-------~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~~ 123 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM-------KQTVESIQHAKDAHVP-IVLAINKCDKAEADPEK 123 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCC-------HHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCCS
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEEecccccccchHH
Confidence 889999999999999999999999999999999999865 6999999999999999 89999999995443221
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEE
Q 010985 223 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK 302 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~ 302 (496)
...........+..+ ...++++++||++|.|++++.+. +...+. ...+..+++.|++++|.++
T Consensus 124 --v~~~l~~~~~~~e~~----~~~~~iv~vSAktG~GI~eLle~----------I~~l~~-~~~~~~~~~~~~~~~V~e~ 186 (537)
T 3izy_P 124 --VKKELLAYDVVCEDY----GGDVQAVHVSALTGENMMALAEA----------TIALAE-MLELKADPTGAVEGTVIES 186 (537)
T ss_dssp --SSSHHHHTTSCCCCS----SSSEEECCCCSSSSCSSHHHHHH----------HHHHHT-TCCCCCCSSSSEEEEEEEE
T ss_pred --HHHHHHhhhhhHHhc----CCCceEEEEECCCCCCchhHHHH----------HHHhhh-cccccCCCCCCcceeEEEE
Confidence 111111110011111 12478999999999999986442 333333 2344556678999999999
Q ss_pred E--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEcC-ccccccCCCCeEEEEeccCCccCcceeeEEecCCCC
Q 010985 303 F--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD-NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 379 (496)
Q Consensus 303 ~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~~-~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~ 379 (496)
+ ++.|++++|+|.+|+|++||.+. ++....+|++|+.++ .++++|.||++|++ .|++ ....+|++++..+++
T Consensus 187 ~~~~g~G~V~~g~V~~G~l~~Gd~v~--~g~~~~kVr~i~~~~g~~v~~A~~G~~V~i--~g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 187 FTDKGRGPVTTAIIQRGTLRKGSILV--AGKSWAKVRLMFDENGRAVNEAYPSMPVGI--IGWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp CCCTTCCCCEEEEEEEECCSSEEEEC--CSSCCEEEEEEEECCCCCSCCSCCSTTCCC--CSSE-EEEEEESSCCSCCSS
T ss_pred EEeCCCceEEEEEEecCEEEcCCEEE--eCCceEEEEEEEcCCCCCCcEEcCCCEEEE--ECCC-CCCCCCCEEEecCCh
Confidence 8 57899999999999999999875 345668999999985 79999999999985 5665 335899999987643
No 27
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.98 E-value=4.7e-31 Score=287.12 Aligned_cols=275 Identities=23% Similarity=0.263 Sum_probs=197.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+|+||+|||||||+++|++..+.+....- . . ....++|+.+.|+.+|+|+......+.+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~------v-~------~~~~~~d~~~~E~~~giTi~~~~~~~~~~ 75 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGE------V-H------EGAATMDFMEQERERGITITAAVTTCFWK 75 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEET
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccce------e-c------CCceeccCchhhhhcccccccceEEEEEC
Confidence 346799999999999999999999988876543210 0 0 12456888899999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|||||||.+|...+.++++.+|++|+|+|++.+.. .++..++..+...++| +++|+||+|+...+
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~-- 145 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE-------PQSETVWRQAEKYKVP-RIAFANKMDKTGAD-- 145 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcc-------hhhHHHHHHHHHcCCC-EEEEEECCCcccCC--
Confidence 9999999999999999999999999999999999999853 5888899888889999 78999999995443
Q ss_pred HHHHHHHHHHHHHHHHh---------------------------------------------------------------
Q 010985 222 KERYDEIESKMTPFLKA--------------------------------------------------------------- 238 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~--------------------------------------------------------------- 238 (496)
+.++.++++..+..
T Consensus 146 ---~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e 222 (691)
T 1dar_A 146 ---LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAAD 222 (691)
T ss_dssp ---HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 22333333332210
Q ss_pred ------------cCCC-------------ccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCC----
Q 010985 239 ------------SGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 289 (496)
Q Consensus 239 ------------~~~~-------------~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~---- 289 (496)
..+. ...-+|+++.||++|.|+..+ |...++.+|.|..
T Consensus 223 ~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~~ 289 (691)
T 1dar_A 223 FDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLL-------------LDAVVDYLPSPLDIPPI 289 (691)
T ss_dssp TCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHH-------------HHHHHHHSCCTTTSCCE
T ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHH-------------HHHHHHhCCChhhcccc
Confidence 0000 001257888899999888774 3334566776653
Q ss_pred --------------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----Ccccccc
Q 010985 290 --------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHA 349 (496)
Q Consensus 290 --------------~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a 349 (496)
+.+.|+.+.|++++ +..|+++++||++|+|+.||.|+..+.++..+|..|... +.++++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~ 369 (691)
T 1dar_A 290 KGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEEL 369 (691)
T ss_dssp EEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEE
T ss_pred cccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEccee
Confidence 25789999999987 468999999999999999999999888888899998765 4689999
Q ss_pred CCCCeEEEEeccCCccCcceeeEEecCCCC
Q 010985 350 GPGENLRIRLSGIEEEDILSGFVLSSVAKP 379 (496)
Q Consensus 350 ~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~ 379 (496)
.||++|++. |++ +++.|++|++.+.+
T Consensus 370 ~aGdI~~i~--gl~--~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 370 KAGDLGAVV--GLK--ETITGDTLVGEDAP 395 (691)
T ss_dssp ETTCEEEEE--CCS--SCCTTCEEEETTCC
T ss_pred cCCCEEEEe--Ccc--cCccCCEEecCCCc
Confidence 999999964 664 47889999987654
No 28
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.97 E-value=1.5e-32 Score=285.75 Aligned_cols=247 Identities=28% Similarity=0.341 Sum_probs=191.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.++|+++||+|+|||||+++|+...- .....+|+|++.....+++++.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-------------------------------~~~e~~GIT~~i~~~~v~~~~~ 51 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-------------------------------ASGEAGGITQHIGAYHVETENG 51 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-------------------------------SBTTBCCCCCCSSCCCCCTTSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-------------------------------ccccCCCeeEeEEEEEEEECCE
Confidence 468999999999999999999963210 0112378999999888888999
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHH
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.++|+|||||++|...+.++++.+|++|||+|+++|.+ +||.+++..+...++| +|+++||+|++..++.
T Consensus 52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~-------~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~-- 121 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM-------PQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPD-- 121 (501)
T ss_dssp CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSC-------TTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCC--
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCcc-------HHHHHHHHHHHhcCce-EEEEEEeccccccCHH--
Confidence 99999999999999999999999999999999999864 6999999999999999 9999999999543321
Q ss_pred HHHHHHHHHHHHHHhcCCCc---cCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhc---cCCCCCCCCCCeEE
Q 010985 224 RYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR---IEITPRDPNGPFRM 297 (496)
Q Consensus 224 ~~~~i~~~l~~~l~~~~~~~---~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~---l~~~~~~~~~p~~~ 297 (496)
+ +...+...++.+ ...++++++||++|.|++++ ++.|.. +..+..+++.|++.
T Consensus 122 ~-------v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL--------------le~I~~~~~~~~~~~~~~~~~~~ 180 (501)
T 1zo1_I 122 R-------VKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL--------------LDAILLQAEVLELKAVRKGMASG 180 (501)
T ss_dssp C-------TTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH--------------HHHTTTTCCCSTTTSCCCSBCEE
T ss_pred H-------HHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh--------------hhhhhhhhhhhcccccccccccc
Confidence 1 111111111110 12468999999999999985 333322 22333456788999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc-CccccccCCCCeEEEEeccCCccCcceeeEEe
Q 010985 298 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 374 (496)
Q Consensus 298 ~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 374 (496)
.|.+++ ++.|++++|+|.+|+|++||.+.+++ ...+|++|... +.++++|.||+.|.+. |++. ....|++++
T Consensus 181 ~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~--~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~~-~~~~Gd~~~ 255 (501)
T 1zo1_I 181 AVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF--EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLSG-VPAAGDEVT 255 (501)
T ss_dssp EEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB--SSCEEEEECCTTTTSEEEECCSSCSSSE--EECS-CCCTTEEEE
T ss_pred ceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc--ceeEEEEEEecCCCcCcEeccCCcEEEe--CCCC-CCCCCCEEE
Confidence 999988 57899999999999999999999865 45699999864 6799999999999853 4442 246899987
Q ss_pred cCC
Q 010985 375 SVA 377 (496)
Q Consensus 375 ~~~ 377 (496)
...
T Consensus 256 ~~~ 258 (501)
T 1zo1_I 256 VVR 258 (501)
T ss_dssp EEC
T ss_pred ecC
Confidence 654
No 29
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=2e-30 Score=282.25 Aligned_cols=274 Identities=23% Similarity=0.257 Sum_probs=196.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+|+||+|+|||||+++|++..+.+....- . ......+|..+.|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~------v-------~~~~~~~D~~~~e~~~giTi~~~~~~~~~~ 73 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE------T-------HEGASQMDWMEQEQDRGITITSAATTAAWE 73 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEET
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCcccccc------c-------cCCceecccchhhhhcCceEeeeeEEEEEC
Confidence 456789999999999999999999988777643210 0 012356788889999999999999999999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|+|||||.+|...+.++++.+|++|+|+|+..+.. .++...+..+...++| +|+|+||+|+...+
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~-------~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-- 143 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVE-------PQTETVWRQATTYGVP-RIVFVNKMDKLGAN-- 143 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECCCccccc--
Confidence 9999999999999999999999999999999999998753 5888888888888999 88999999995432
Q ss_pred HHHHHHHHHHHHHHHHhcC--------------------------CC-c-------------------------------
Q 010985 222 KERYDEIESKMTPFLKASG--------------------------YN-V------------------------------- 243 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~--------------------------~~-~------------------------------- 243 (496)
+.++.++++..+.... |. .
T Consensus 144 ---~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e 220 (693)
T 2xex_A 144 ---FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAE 220 (693)
T ss_dssp ---HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 2333444444332100 00 0
Q ss_pred ------------------------------cCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCC----
Q 010985 244 ------------------------------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 289 (496)
Q Consensus 244 ------------------------------~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~---- 289 (496)
..-+|+++.||++|.|+..+ |...++.+|+|..
T Consensus 221 ~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~~ 287 (693)
T 2xex_A 221 TSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLM-------------LDAVIDYLPSPLDVKPI 287 (693)
T ss_dssp TCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-------------HHHHHHHSCCGGGSCCE
T ss_pred CCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHH-------------HHHHHHHCCCchhcccc
Confidence 01146667777777776653 2234556776643
Q ss_pred ----------------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----Ccccc
Q 010985 290 ----------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVR 347 (496)
Q Consensus 290 ----------------~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~ 347 (496)
+.+.||.+.|++++ +..|.++++||+||+|+.||+|+....++..+|.+|... ..+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 367 (693)
T 2xex_A 288 IGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEID 367 (693)
T ss_dssp EEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECS
T ss_pred cccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEcc
Confidence 25789999999987 467999999999999999999999888888899999765 46899
Q ss_pred ccCCCCeEEEEeccCCccCcceeeEEecCCC
Q 010985 348 HAGPGENLRIRLSGIEEEDILSGFVLSSVAK 378 (496)
Q Consensus 348 ~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 378 (496)
+|.||++|++. |++ +++.|++|++.+.
T Consensus 368 ~~~aGdI~~i~--gl~--~~~~GdTl~~~~~ 394 (693)
T 2xex_A 368 TVYSGDIAAAV--GLK--DTGTGDTLCGEKN 394 (693)
T ss_dssp EEETTCEEEEE--SCS--SCCTTCEEEETTC
T ss_pred ccCcCCEEEEe--Ccc--cCccCCEEecCCC
Confidence 99999999964 664 4788999998664
No 30
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.97 E-value=2.5e-30 Score=280.58 Aligned_cols=272 Identities=24% Similarity=0.277 Sum_probs=212.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+..+|+|+||+|||||||+++|++..+.+... |.- .....++|....|+.+|+|+......+.+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~------------G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~ 72 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERR------------GRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR 72 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSC------------CCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcc------------cee-cCCcccccCCHHHHhcCCeEEecceEEeeC
Confidence 3567899999999999999999999877654321 111 123456788889999999999888889999
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
++.++|+|||||.+|...+.++++.+|++++|+|+..+.. .++++++..+...++| +|+|+||+|+. .. .
T Consensus 73 ~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~-------~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~-~ 142 (665)
T 2dy1_A 73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQ-------VGTERAWTVAERLGLP-RMVVVTKLDKG-GD-Y 142 (665)
T ss_dssp TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-EEEEEECGGGC-CC-H
T ss_pred CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccc-------hhHHHHHHHHHHccCC-EEEEecCCchh-hh-H
Confidence 9999999999999999999999999999999999998853 6899999999999999 78899999985 32 2
Q ss_pred HHHHHHHHHHHHHHHH----------------------------------------------------------------
Q 010985 222 KERYDEIESKMTPFLK---------------------------------------------------------------- 237 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~---------------------------------------------------------------- 237 (496)
. ++.+++...+.
T Consensus 143 ~----~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~ 218 (665)
T 2dy1_A 143 Y----ALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEG 218 (665)
T ss_dssp H----HHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHH
T ss_pred H----HHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 2 23333333222
Q ss_pred -------hcCCC-------------ccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCC-CCCCeE
Q 010985 238 -------ASGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFR 296 (496)
Q Consensus 238 -------~~~~~-------------~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~-~~~p~~ 296 (496)
...+. ...-+|++++||++|.|+..+ |...++.+|.|... .+.|+.
T Consensus 219 l~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~L-------------l~~i~~~lp~p~~~~~~~p~~ 285 (665)
T 2dy1_A 219 LLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPL-------------LELILEALPSPTERFGDGPPL 285 (665)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-------------HHHHHHHSCCHHHHHCSCSCE
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHHH-------------HHHHHHhCCCccccCCCCCeE
Confidence 00000 001257888999999998874 33344567766543 678999
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEEc----CccccccCCCCeEEEEeccCCccCccee
Q 010985 297 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 370 (496)
Q Consensus 297 ~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G 370 (496)
+.|.+++ +..|++++|||++|+|+.||.|++.+ ...+|.+|... +.++++|.||++|++ .|++ ++++|
T Consensus 286 ~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i--~gl~--~~~~G 359 (665)
T 2dy1_A 286 AKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGV--PKAE--GLHRG 359 (665)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEE--SSCT--TCCTT
T ss_pred EEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEE--eCCc--cCccC
Confidence 9999988 46899999999999999999999877 67789998764 468999999999996 4654 58899
Q ss_pred eEEecCCCC
Q 010985 371 FVLSSVAKP 379 (496)
Q Consensus 371 ~vl~~~~~~ 379 (496)
++|++.+.+
T Consensus 360 dtl~~~~~~ 368 (665)
T 2dy1_A 360 MVLWQGEKP 368 (665)
T ss_dssp CEEESSSCC
T ss_pred CEEecCCCc
Confidence 999987653
No 31
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.97 E-value=2.9e-30 Score=275.03 Aligned_cols=261 Identities=21% Similarity=0.369 Sum_probs=188.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 141 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-- 141 (496)
+.++|+++||+|||||||+++|++.... +. ..+|+|.+.....+.+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~---------------------------~~----e~ggiT~~ig~~~~~~~~~ 52 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA---------------------------SR----EAGGITQHIGATEIPMDVI 52 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS---------------------------CC--------CCCBTTEEEEEHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc---------------------------cc----cCCceecccCeEEEeechh
Confidence 4579999999999999999999743210 00 01355555444443321
Q ss_pred ----------------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCce
Q 010985 142 ----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 205 (496)
Q Consensus 142 ----------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~ 205 (496)
...++|+|||||.+|...+.++++.+|++|||+|+++|.. +||.+++..+...++|
T Consensus 53 ~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~-------~qT~e~l~~l~~~~vP- 124 (594)
T 1g7s_A 53 EGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFK-------PQTQEALNILRMYRTP- 124 (594)
T ss_dssp HHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCC-
T ss_pred hhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCe-
Confidence 2259999999999999998889999999999999999853 6999999999999999
Q ss_pred EEEEEeeccCCCCCcc------------------HHHHHHHHHHHHHHHHhcCCCc---------cCCeeEEeecccccc
Q 010985 206 LLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMGL 258 (496)
Q Consensus 206 ~ivviNK~D~~~~~~~------------------~~~~~~i~~~l~~~l~~~~~~~---------~~~~~~ipiSa~~g~ 258 (496)
+|+|+||||+... |. .+.+.+...++...|...++.. ...++++|+||++|.
T Consensus 125 iIVViNKiDl~~~-~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~ 203 (594)
T 1g7s_A 125 FVVAANKIDRIHG-WRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE 203 (594)
T ss_dssp EEEEEECGGGSTT-CCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT
T ss_pred EEEEecccccccc-cccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC
Confidence 8999999999532 22 1234444455555565555431 134689999999999
Q ss_pred ccccccccCCCCCCChhhHHHHHhc-cC-CCCCCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeeecCCEEEEecCCc--
Q 010985 259 NMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA-- 332 (496)
Q Consensus 259 gi~~l~~~~~~~w~~g~~L~~~l~~-l~-~~~~~~~~p~~~~i~~~~--~~~G~v~~g~v~~G~l~~g~~v~~~p~~~-- 332 (496)
|+.++++. +...+.. ++ ....+.+.|+++.|.+++ ++.|++++|+|.+|+|++||.|.++|.+.
T Consensus 204 GI~eLl~~----------I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~ 273 (594)
T 1g7s_A 204 GIPELLTM----------LMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVI 273 (594)
T ss_dssp THHHHHHH----------HHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEE
T ss_pred CchhHHHH----------HHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCce
Confidence 99986442 3333322 11 112345789999999987 56799999999999999999999999876
Q ss_pred eEEEEEEEEc------------CccccccC--CCCeEEEEeccCCccCcceeeEEecCCC
Q 010985 333 QVKVLAIYCD------------DNRVRHAG--PGENLRIRLSGIEEEDILSGFVLSSVAK 378 (496)
Q Consensus 333 ~~~V~sI~~~------------~~~v~~a~--aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 378 (496)
.++|++|... ..++++|. +|+.|+ +.+++ ++..|+.|+...+
T Consensus 274 ~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~--~~~l~--~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 274 STRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIV--APGID--DVMAGSPLRVVTD 329 (594)
T ss_dssp EEECCEEEEECCCC----CCCSEEECSEEESSEEEEEE--CSSCT--TBCTTCEEEECSS
T ss_pred eEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEE--EcccC--CCCCCCEEEecCC
Confidence 4599999763 34677777 666655 45443 4689999987754
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.95 E-value=5.1e-27 Score=260.40 Aligned_cols=288 Identities=19% Similarity=0.272 Sum_probs=196.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~- 141 (496)
...+||+|+||+|||||||+++|++..|.+..... | ....+|....|+++|+|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~----------~-----~~~~~D~~~~E~~rgiTI~~~~~~~~~~~ 81 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKA----------G-----EARFTDTRKDEQERGITIKSTAISLYSEM 81 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEEEC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccC----------C-----CceeecCchhhhhcceeEeeceeEEEecc
Confidence 45689999999999999999999998888765420 1 1345788889999999998887776664
Q ss_pred ---------------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceE
Q 010985 142 ---------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKL 206 (496)
Q Consensus 142 ---------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ 206 (496)
++.++|||||||.+|...+.++++.+|++|+|+|+..+.. .|+..++..+...++| +
T Consensus 82 ~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~-------~qt~~~~~~~~~~~~p-~ 153 (842)
T 1n0u_A 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC-------VQTETVLRQALGERIK-P 153 (842)
T ss_dssp CHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCE-E
T ss_pred cccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-e
Confidence 6889999999999999999999999999999999999854 5888888888888998 7
Q ss_pred EEEEeeccCCCCC--cc----HHHHHHHHHHHHHHHHhc-----C---CCccCCeeEEeecccccccccc----------
Q 010985 207 LLVVNKMDDHTVN--WS----KERYDEIESKMTPFLKAS-----G---YNVKKDVQFLPISGLMGLNMKT---------- 262 (496)
Q Consensus 207 ivviNK~D~~~~~--~~----~~~~~~i~~~l~~~l~~~-----~---~~~~~~~~~ipiSa~~g~gi~~---------- 262 (496)
|+|+||+|+...+ ++ ...++++.++++..+..+ + +.+. ..++...|+++|+++.-
T Consensus 154 ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~-~~~v~~~sa~~g~~~~~~~f~~~y~~~ 232 (842)
T 1n0u_A 154 VVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPA-RGTVAFGSGLHGWAFTIRQFATRYAKK 232 (842)
T ss_dssp EEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGG-GTCEEEEETTTTEEEEHHHHHHHHHTT
T ss_pred EEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceE-EeeeEEeecccccccchhhhhhhcchh
Confidence 8999999984211 12 234566667777666432 1 2211 12466689988866420
Q ss_pred cc---c-cCCCCC----C--------C-----------------------------------------------------
Q 010985 263 RV---D-KSLCPW----W--------N----------------------------------------------------- 273 (496)
Q Consensus 263 l~---~-~~~~~w----~--------~----------------------------------------------------- 273 (496)
+. + .....| | .
T Consensus 233 ~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~ 312 (842)
T 1n0u_A 233 FGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEK 312 (842)
T ss_dssp TTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGG
T ss_pred cCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHH
Confidence 00 0 000011 0 0
Q ss_pred ------------------hhhHHH-HHhccCCCC-------------------------CCCCCCeEEEEEEEE--ccCC
Q 010985 274 ------------------GPCLFE-ALDRIEITP-------------------------RDPNGPFRMPIIDKF--KDMG 307 (496)
Q Consensus 274 ------------------g~~L~~-~l~~l~~~~-------------------------~~~~~p~~~~i~~~~--~~~G 307 (496)
...|++ .++.+|+|. .+.+.|+.+.|+.++ +..|
T Consensus 313 ~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G 392 (842)
T 1n0u_A 313 DLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKG 392 (842)
T ss_dssp GCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTT
T ss_pred hhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCC
Confidence 022333 234456553 245789999999987 3679
Q ss_pred e-EEEEEEEEeeeecCCEEEEecCC------c---eEEEEEEEEc----CccccccCCCCeEEEEeccCCccCcceeeEE
Q 010985 308 T-VVMGKVESGSVREGDSLLVMPNK------A---QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 373 (496)
Q Consensus 308 ~-v~~g~v~~G~l~~g~~v~~~p~~------~---~~~V~sI~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 373 (496)
. +.++||+||+|+.||.|.+...+ . ..+|..|... ..++++|.||++|+ +.|++...++.| +|
T Consensus 393 ~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~a--i~gl~~~~~~t~-Tl 469 (842)
T 1n0u_A 393 RFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIG--LVGIDQFLLKTG-TL 469 (842)
T ss_dssp CEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEE--EESCTTTCCSSE-EE
T ss_pred ceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEE--EEccccceecce-ee
Confidence 5 99999999999999999765322 2 4788888765 46899999999998 567765444556 88
Q ss_pred ecCC
Q 010985 374 SSVA 377 (496)
Q Consensus 374 ~~~~ 377 (496)
++.+
T Consensus 470 ~~~~ 473 (842)
T 1n0u_A 470 TTSE 473 (842)
T ss_dssp ESCT
T ss_pred cCCC
Confidence 8654
No 33
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=6.4e-24 Score=220.85 Aligned_cols=210 Identities=17% Similarity=0.138 Sum_probs=132.7
Q ss_pred chhhhcccccccccccCCCCCCCCCCCcchhcccchhhhhhhcchhhhccccccccccCCcceeEEEEEecCCCChHHHH
Q 010985 3 IEEDIRSLQLDSAEENNGVVNPGDARPEEVEVVDKMEEVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTG 82 (496)
Q Consensus 3 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~ 82 (496)
.+..||+.++...+..|+.+||+|+ +.+..........+..+.+++.........++..++.++|+++|++|+|||||+
T Consensus 172 ~i~~lr~~L~~~~a~iea~iDf~ee-di~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLl 250 (476)
T 3gee_A 172 RLGGLREQLIRSCALIELELDFSEE-DVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLL 250 (476)
T ss_dssp HHHHHHTHHHHHHHTTTTCSSCCSS-CCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhheecCCCcc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCEEEEECCCCCCHHHHH
Confidence 3678999999999999999999985 333333334445566666677776666666777788899999999999999999
Q ss_pred HHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEEEeCCCCcccH-----
Q 010985 83 GQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYV----- 157 (496)
Q Consensus 83 ~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDtpG~~~~~----- 157 (496)
|+|+.....+. ...+|+|++.....+..+++.+.|+||||++++-
T Consensus 251 n~L~~~~~a~v------------------------------s~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~ 300 (476)
T 3gee_A 251 NTLLGQERAIV------------------------------SHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEH 300 (476)
T ss_dssp HHCC------------------------------------------------CEEEEETTEEEEEEC-------------
T ss_pred HHHhCCCCccc------------------------------CCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHH
Confidence 99964322211 2237899999999999999999999999998763
Q ss_pred ---hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEeeccCCCCCccHHHHHHHHHHHH
Q 010985 158 ---PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 233 (496)
Q Consensus 158 ---~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~ 233 (496)
..+...+..+|++|+|+|++.+... .+..+...++..+ +.| +|+|+||+|+.... .... +++.
T Consensus 301 ~gi~~~~~~~~~aD~vl~VvD~s~~~s~------~~~~~~~~~l~~l~~~p-iIvV~NK~Dl~~~~--~~~~----~~l~ 367 (476)
T 3gee_A 301 EGIRRSRMKMAEADLILYLLDLGTERLD------DELTEIRELKAAHPAAK-FLTVANKLDRAANA--DALI----RAIA 367 (476)
T ss_dssp -------CCCSSCSEEEEEEETTTCSSG------GGHHHHHHHHHHCTTSE-EEEEEECTTSCTTT--HHHH----HHHH
T ss_pred HHHHHHHhhcccCCEEEEEEECCCCcch------hhhHHHHHHHHhcCCCC-EEEEEECcCCCCcc--chhH----HHHH
Confidence 3345567899999999999987431 1222344444444 455 89999999994332 1111 1121
Q ss_pred HHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 234 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 234 ~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
..++ .+++++||++|.|++++.+
T Consensus 368 ----~~~~-----~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 368 ----DGTG-----TEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp ----HHHT-----SCEEECBTTTTBSHHHHHH
T ss_pred ----hcCC-----CceEEEEECCCCCHHHHHH
Confidence 1111 3689999999999998643
No 34
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=2.9e-23 Score=215.15 Aligned_cols=205 Identities=16% Similarity=0.112 Sum_probs=139.4
Q ss_pred chhhhcccccccccccCCCCCCCCCCCcchhcccchhhhhhhcchhhhccccccccccCCcceeEEEEEecCCCChHHHH
Q 010985 3 IEEDIRSLQLDSAEENNGVVNPGDARPEEVEVVDKMEEVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTG 82 (496)
Q Consensus 3 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~ 82 (496)
.+..||+.++...+..|+.+||+|+ .+..........+....+++.........++..++.++|+++|++|+|||||+
T Consensus 164 ~~~~~r~~l~~~~a~iEa~iDf~ed--~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLl 241 (462)
T 3geh_A 164 PIRQLRANCLDILAEIEARIDFEED--LPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLL 241 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSS--SCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHHHHCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccc--CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999999999883 33333344555666666777776666666777788899999999999999999
Q ss_pred HHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEEEeCCCCcccH-----
Q 010985 83 GQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYV----- 157 (496)
Q Consensus 83 ~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDtpG~~~~~----- 157 (496)
|+|+.....+... .+|+|++.....+.+++..+.|+||||++++.
T Consensus 242 n~L~~~~~a~v~~------------------------------~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~ 291 (462)
T 3geh_A 242 NAWSQSDRAIVTD------------------------------LPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEK 291 (462)
T ss_dssp HHHHHHHBSCCSC------------------------------CTTCCHHHHHHEEEETTEEEEECC-------------
T ss_pred HHHhCCCcccccC------------------------------CCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHH
Confidence 9997654332221 27889998888888999999999999987752
Q ss_pred ---hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHH
Q 010985 158 ---PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTP 234 (496)
Q Consensus 158 ---~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~ 234 (496)
+.+...+..+|++|+|+|++.+.. .+..+.+..+ ...| +|+|+||+|+..... ..
T Consensus 292 ~gi~~~~~~~~~aD~vl~VvD~s~~~~-------~~~~~i~~~l--~~~p-iivV~NK~Dl~~~~~----~~-------- 349 (462)
T 3geh_A 292 IGVERSRQAANTADLVLLTIDAATGWT-------TGDQEIYEQV--KHRP-LILVMNKIDLVEKQL----IT-------- 349 (462)
T ss_dssp -------CCCCSCSEEEEEEETTTCSC-------HHHHHHHHHH--TTSC-EEEEEECTTSSCGGG----ST--------
T ss_pred HHHHHHhhhhhcCCEEEEEeccCCCCC-------HHHHHHHHhc--cCCc-EEEEEECCCCCcchh----hH--------
Confidence 345556789999999999998632 1222222222 2345 899999999943211 00
Q ss_pred HHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 235 FLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 235 ~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.++.+. ...+++++||++|.|++++.+
T Consensus 350 ~~~~~~----~~~~~i~iSAktg~Gi~eL~~ 376 (462)
T 3geh_A 350 SLEYPE----NITQIVHTAAAQKQGIDSLET 376 (462)
T ss_dssp TCCCCT----TCCCEEEEBTTTTBSHHHHHH
T ss_pred HHHHhc----cCCcEEEEECCCCCCHHHHHH
Confidence 111111 135799999999999998643
No 35
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=1e-22 Score=211.86 Aligned_cols=205 Identities=20% Similarity=0.223 Sum_probs=144.7
Q ss_pred chhhhcccccccccccCCCCCCCCCCCcchhcccchhhhhhhcchhhhccccccccccCCcceeEEEEEecCCCChHHHH
Q 010985 3 IEEDIRSLQLDSAEENNGVVNPGDARPEEVEVVDKMEEVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTG 82 (496)
Q Consensus 3 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~ 82 (496)
.+..||+.++...+..++.+||+++ .+..... +...+..+..++...+...+.++..++.++|+++|.||+|||||+
T Consensus 184 ~~~~~r~~l~~~~~~ie~~idf~ee--i~~~~~~-i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLl 260 (482)
T 1xzp_A 184 FVDSLRRELIEVLAEIRVELDYPDE--IETNTGE-VVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLL 260 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTT--CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCCCcc--ccchHHH-HHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHH
Confidence 3568998888888888999999885 2211112 444455555566655555555666677899999999999999999
Q ss_pred HHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEEEEeCCCCc-cc-----
Q 010985 83 GQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHK-SY----- 156 (496)
Q Consensus 83 ~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDtpG~~-~~----- 156 (496)
|+|+.....+.. ..+|+|+|.....+.+++..+.|+||||++ ++
T Consensus 261 n~L~~~~~a~vs------------------------------~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve 310 (482)
T 1xzp_A 261 NRLLNEDRAIVT------------------------------DIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE 310 (482)
T ss_dssp HHHHHHTBCCCC------------------------------CSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC
T ss_pred HHHHCCCCCccC------------------------------CCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHH
Confidence 999754322221 137899999999999999999999999998 65
Q ss_pred ---HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHH
Q 010985 157 ---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 233 (496)
Q Consensus 157 ---~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~ 233 (496)
+..+...+..+|++|+|+|++.+.. .+..+.+..+ .+.| +|+|+||+|+... .+. ++ +.
T Consensus 311 ~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~il~~l--~~~p-iivV~NK~DL~~~-~~~---~~----~~ 372 (482)
T 1xzp_A 311 RLGIERTLQEIEKADIVLFVLDASSPLD-------EEDRKILERI--KNKR-YLVVINKVDVVEK-INE---EE----IK 372 (482)
T ss_dssp CCCHHHHHHHHHHCSEEEEEEETTSCCC-------HHHHHHHHHH--TTSS-EEEEEEECSSCCC-CCH---HH----HH
T ss_pred HHHHHHHHHHhhcccEEEEEecCCCCCC-------HHHHHHHHHh--cCCC-EEEEEECcccccc-cCH---HH----HH
Confidence 2456677889999999999987632 1223333222 2566 8999999999432 121 12 22
Q ss_pred HHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 234 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 234 ~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.++ +. ..+++++||++|.|++++.+
T Consensus 373 ~~~---~~----~~~~i~iSAktg~Gi~eL~~ 397 (482)
T 1xzp_A 373 NKL---GT----DRHMVKISALKGEGLEKLEE 397 (482)
T ss_dssp HHH---TC----STTEEEEEGGGTCCHHHHHH
T ss_pred HHh---cC----CCcEEEEECCCCCCHHHHHH
Confidence 222 11 24789999999999998654
No 36
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=2.7e-21 Score=200.30 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=112.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+|+|+.....+ ....+|+|++.....+++++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~ 222 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYNQ 222 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------EC---------CCEEEEETT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceeeeeEEEEEECC
Confidence 456899999999999999999997432211 12247899999999999999
Q ss_pred eEEEEEeCCCCcccH-----------hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 010985 143 TRFTILDAPGHKSYV-----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 211 (496)
Q Consensus 143 ~~i~liDtpG~~~~~-----------~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN 211 (496)
..+.|+||||++++. ..+..++..||++|+|+|++.+.. .|+.+.+..+...+.| +|+|+|
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s-------~~~~~~~~~~~~~~~~-iiiv~N 294 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIVVN 294 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEEE
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 999999999984432 134467789999999999999854 3666677777777877 999999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+|+.. .....++++.+++...+...+ ..+++++||++|.|+.++.+
T Consensus 295 K~Dl~~--~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~SA~tg~~v~~l~~ 341 (436)
T 2hjg_A 295 KWDAVD--KDESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 341 (436)
T ss_dssp CGGGSC--CCTTHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred CccCCC--cchHHHHHHHHHHHHhcccCC-----CCCEEEEecccCCCHHHHHH
Confidence 999943 233334556666666555443 35899999999999998753
No 37
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=1.6e-20 Score=195.69 Aligned_cols=160 Identities=19% Similarity=0.295 Sum_probs=119.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
.....++|+++|++|+|||||+|+|+.....+ ....+|+|++.....++.
T Consensus 191 ~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~------------------------------~~~~~gtt~~~~~~~~~~ 240 (456)
T 4dcu_A 191 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTY 240 (456)
T ss_dssp CCTTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------ECC------CTTSEEEEE
T ss_pred cccccceeEEecCCCCCHHHHHHHHhCCCccc------------------------------cCCCCCeEEEEEEEEEEE
Confidence 34567999999999999999999996332211 122378999999999999
Q ss_pred CCeEEEEEeCCC----------CcccH-hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 010985 141 ETTRFTILDAPG----------HKSYV-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 209 (496)
Q Consensus 141 ~~~~i~liDtpG----------~~~~~-~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivv 209 (496)
++..++|+|||| ++.|. ..+..++..||++|+|+|++.+.. .+..+.+..+...+.| +|+|
T Consensus 241 ~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-------~~~~~~~~~~~~~~~~-~ilv 312 (456)
T 4dcu_A 241 NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIV 312 (456)
T ss_dssp TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEE
T ss_pred CCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEE
Confidence 999999999999 45553 334567889999999999998754 4778888888888888 8999
Q ss_pred EeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 210 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 210 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+||+|+.. .....++++.+.+...+...+ ..+++++||++|.|++++.+
T Consensus 313 ~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 361 (456)
T 4dcu_A 313 VNKWDAVD--KDESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 361 (456)
T ss_dssp EECGGGSC--CCSSHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred EEChhcCC--CchHHHHHHHHHHHHhcccCC-----CCCEEEEcCCCCcCHHHHHH
Confidence 99999943 334456666677776666544 35799999999999998754
No 38
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.82 E-value=1.7e-20 Score=169.18 Aligned_cols=156 Identities=28% Similarity=0.392 Sum_probs=112.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+.++|+++|.+|+|||||+++|+... .. ....+++|.+.....+..+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~ 53 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSK--VT-----------------------------EQEAGGITQHIGAYQVTVN 53 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTC--SS-----------------------------CSSCCSSSTTCCCCEEEET
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCc--cc-----------------------------cCCCCceeEeeeEEEEEeC
Confidence 4567899999999999999999995311 10 1112556666666778888
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
+..+.|+||||+.+|.......+..+|++|+|+|++.+.. .++.+.+..+...++| +++|+||+|+... .
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~--~ 123 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVM-------PQTVEAINHAKAANVP-IIVAINKMDKPEA--N 123 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCC-------HHHHHHHHHHGGGSCC-EEEEEETTTSSCS--C
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHhCCCC-EEEEEECccCCcC--C
Confidence 9999999999999998877788899999999999988643 3566666666666788 8999999999432 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCc---cCCeeEEeeccccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~---~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.+.. ... +...+.-. ...++++++||++|.|++++.+
T Consensus 124 ~~~~---~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 124 PDRV---MQE----LMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLE 163 (178)
T ss_dssp HHHH---HHH----HTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHH
T ss_pred HHHH---HHH----HHhcCcChhHcCCcccEEEEecCCCCCHHHHHH
Confidence 2222 221 22211100 0136899999999999998644
No 39
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.81 E-value=1.3e-19 Score=178.87 Aligned_cols=155 Identities=21% Similarity=0.220 Sum_probs=111.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+.-.|+++|++|+|||||+|+|+...-.+. ...+++|++.....+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~------------------------------s~~~~tT~~~~~~~~~~~ 56 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII------------------------------SPKAGTTRMRVLGVKNIP 56 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC------------------------------CSSSCCCCSCEEEEEEET
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCcccc------------------------------CCCCCceeeEEEEEEecC
Confidence 34567899999999999999999974332221 223778888888888888
Q ss_pred -CeEEEEEeCCCCccc----------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHH-HHHHHHcCCceEEEE
Q 010985 142 -TTRFTILDAPGHKSY----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH-VMLAKTLGVTKLLLV 209 (496)
Q Consensus 142 -~~~i~liDtpG~~~~----------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~-~~~~~~~~~~~~ivv 209 (496)
+..++|+||||+.++ ...+...+..+|++|+|+|++.+.. .++... +..+...++| +++|
T Consensus 57 ~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~-------~~~~~~~~~~l~~~~~p-vilV 128 (308)
T 3iev_A 57 NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWR-------PRDEEIYQNFIKPLNKP-VIVV 128 (308)
T ss_dssp TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHTGGGCCC-EEEE
T ss_pred CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC-------chhHHHHHHHHHhcCCC-EEEE
Confidence 999999999998654 3566677889999999999998632 344555 5556666788 8899
Q ss_pred EeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 210 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 210 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+||+|+.. +.+...+..+.+.. .++ ...+++++||++|.|++++.
T Consensus 129 ~NK~Dl~~---~~~~~~~~~~~l~~---~~~----~~~~i~~vSA~~g~gv~~L~ 173 (308)
T 3iev_A 129 INKIDKIG---PAKNVLPLIDEIHK---KHP----ELTEIVPISALKGANLDELV 173 (308)
T ss_dssp EECGGGSS---SGGGGHHHHHHHHH---HCT----TCCCEEECBTTTTBSHHHHH
T ss_pred EECccCCC---CHHHHHHHHHHHHH---hcc----CCCeEEEEeCCCCCCHHHHH
Confidence 99999841 12222333333332 222 12479999999999999864
No 40
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.81 E-value=2e-19 Score=176.83 Aligned_cols=149 Identities=18% Similarity=0.127 Sum_probs=106.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+..+|+++|++|+|||||+|+|++....+.+ ..+++|++.....+...+.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs------------------------------~~~~tTr~~i~~i~~~~~~ 55 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS------------------------------PRPQTTRKRLRGILTEGRR 55 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC------------------------------SSSCCCCSCEEEEEEETTE
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeec------------------------------CCCCceeEEEEEEEEeCCc
Confidence 3467999999999999999999744332211 1256777766666777889
Q ss_pred EEEEEeCCCCcc--------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeec
Q 010985 144 RFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKM 213 (496)
Q Consensus 144 ~i~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~ 213 (496)
+++|+||||+.+ |...+..++..+|++|+|+|++.+.. ......+..+... +.| +|+|+||+
T Consensus 56 ~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~-------~~~~~i~~~l~~~~~~~p-~ilV~NK~ 127 (301)
T 1wf3_A 56 QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPT-------PEDELVARALKPLVGKVP-ILLVGNKL 127 (301)
T ss_dssp EEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCC-------HHHHHHHHHHGGGTTTSC-EEEEEECG
T ss_pred EEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCC-------hHHHHHHHHHHhhcCCCC-EEEEEECc
Confidence 999999999877 56667778899999999999988632 2344444555555 778 88999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 214 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 214 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
|+... ... +.+.+..+ .+ ..+++|+||++|.|++++.
T Consensus 128 Dl~~~---~~~---~~~~~~~~---~~-----~~~~~~iSA~~g~gv~~l~ 164 (301)
T 1wf3_A 128 DAAKY---PEE---AMKAYHEL---LP-----EAEPRMLSALDERQVAELK 164 (301)
T ss_dssp GGCSS---HHH---HHHHHHHT---ST-----TSEEEECCTTCHHHHHHHH
T ss_pred ccCCc---hHH---HHHHHHHh---cC-----cCcEEEEeCCCCCCHHHHH
Confidence 98422 110 22222222 22 2468999999999998853
No 41
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=9.4e-20 Score=170.99 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=109.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE-eC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-TE 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~-~~ 141 (496)
...++|+++|++|+|||||+|+|+..... ......+|+|.+.....+. ..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~ 77 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRL-----------------------------AFASKTPGRTQHINYFSVGPAA 77 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSS-----------------------------SCTTCCCCSCCCEEEEEESCTT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcc-----------------------------eeecCCCCcccceEEEEecCCC
Confidence 45689999999999999999999632210 0111236777777666665 56
Q ss_pred CeEEEEEeCCCCcc-------------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEE
Q 010985 142 TTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 208 (496)
Q Consensus 142 ~~~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~iv 208 (496)
+..+.|+||||+.+ ++...+.....+|++|+|+|+..+.. ....+.+..+...++| +++
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~l~~~~~p-~i~ 149 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT-------ELDRRMIEWFAPTGKP-IHS 149 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHGGGCCC-EEE
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEE
Confidence 78999999999733 34455555667899999999998632 2445555666667788 899
Q ss_pred EEeeccCCCCCccHHHHHHHHHHHHHHHHhc---CCCccCCeeEEeecccccccccccc
Q 010985 209 VVNKMDDHTVNWSKERYDEIESKMTPFLKAS---GYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 209 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~---~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
|+||+|+.. .....+..+.+...+... +.. ...+++++||++|.|+.++.
T Consensus 150 v~nK~Dl~~----~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~SA~~g~gv~~l~ 202 (223)
T 4dhe_A 150 LLTKCDKLT----RQESINALRATQKSLDAYRDAGYA--GKLTVQLFSALKRTGLDDAH 202 (223)
T ss_dssp EEECGGGSC----HHHHHHHHHHHHHHHHHHHHHTCC--SCEEEEEEBTTTTBSHHHHH
T ss_pred EEeccccCC----hhhHHHHHHHHHHHHHhhhhcccC--CCCeEEEeecCCCcCHHHHH
Confidence 999999832 333444444454444442 111 24689999999999999853
No 42
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=6.3e-19 Score=163.91 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=103.0
Q ss_pred hccccccccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhccc
Q 010985 50 EDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGK 129 (496)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~ 129 (496)
+........+......++|+++|++|+|||||+++|+...- ..+..+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~ 53 (213)
T 3cph_A 5 RTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKF-------------------------------NPSFITTI 53 (213)
T ss_dssp ---------------CEEEEEECSTTSSHHHHHHHHHHCCC-------------------------------CCSSSCCC
T ss_pred hhhhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CcccCCcc
Confidence 33334444444556779999999999999999999963211 01112445
Q ss_pred EEeeeeEEEEeCC--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCc
Q 010985 130 TVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVT 204 (496)
Q Consensus 130 T~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~ 204 (496)
+.+.....+..++ ..+.|+||||+++|...+...+..+|++|+|+|++.+.. + ......+..+... ++|
T Consensus 54 ~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p 127 (213)
T 3cph_A 54 GIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT---F---TNIKQWFKTVNEHANDEAQ 127 (213)
T ss_dssp SCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTTTCSE
T ss_pred cceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC
Confidence 5555555666666 679999999999988777778889999999999987532 1 1122333333332 566
Q ss_pred eEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 205 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 205 ~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+++|+||+|+.......+.. ..+.+..+ ++++++||++|.|++++..
T Consensus 128 -iilv~nK~Dl~~~~~~~~~~-------~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 128 -LLLVGNKSDMETRVVTADQG-------EALAKELG------IPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp -EEEEEECTTCSSCCSCHHHH-------HHHHHHHT------CCEEECBTTTTBSSHHHHH
T ss_pred -EEEEEECCCCcccccCHHHH-------HHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 89999999984332232222 22333333 4699999999999998654
No 43
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.78 E-value=9.7e-19 Score=154.83 Aligned_cols=144 Identities=21% Similarity=0.284 Sum_probs=99.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|++|+|||||+++|+...... .+..+++|.+.....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------------------------VADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee------------------------------ccCCCCceecceEEEEEeCCceE
Confidence 689999999999999999996322110 11235677787777888889999
Q ss_pred EEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 146 TILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 146 ~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
.|+||||+.. +...+...+..+|++++|+|++.+.. .........+...++| +++|+||+|+...
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELT-------QADYEVAEYLRRKGKP-VILVATKVDDPKH 123 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCC-------HHHHHHHHHHHHHTCC-EEEEEECCCSGGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCccc-------HhHHHHHHHHHhcCCC-EEEEEECcccccc
Confidence 9999999887 34455667789999999999998632 2334445556666888 8999999998322
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. +++.++. ..++ .+++++||++|.|++++
T Consensus 124 ---~-------~~~~~~~-~~~~-----~~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 124 ---E-------LYLGPLY-GLGF-----GDPIPTSSEHARGLEEL 152 (161)
T ss_dssp ---G-------GGCGGGG-GGSS-----CSCEECBTTTTBSHHHH
T ss_pred ---h-------HhHHHHH-hCCC-----CCeEEEecccCCChHHH
Confidence 1 1222333 3433 26899999999999985
No 44
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=3e-19 Score=173.39 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=104.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.++|+++|++|+|||||+|+|+.... .....+|+|++.....+.+.+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-------------------------------~v~~~~g~t~~~~~~~~~~~~~ 50 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-------------------------------RVGNWAGVTVERKEGQFSTTDH 50 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSSSEEEEEEEECSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeeEEEEEEEEEeCCC
Confidence 358999999999999999999953210 1122378999999899999999
Q ss_pred EEEEEeCCCCcccHh------------HHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 010985 144 RFTILDAPGHKSYVP------------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 211 (496)
Q Consensus 144 ~i~liDtpG~~~~~~------------~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN 211 (496)
.+.|+||||+.+|.. ........+|++|+|+|++.. .........+..+++| +|+|+|
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---------~~~~~~~~~l~~~~~p-~ivv~N 120 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---------ERNLYLTLQLLELGIP-CIVALN 120 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---------HHHHHHHHHHHHHTCC-EEEEEE
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---------HHHHHHHHHHHhcCCC-EEEEEE
Confidence 999999999887641 111123689999999999873 2444555566677899 899999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
|+|+........ .+..+.+.+| ++++++||++|.|++++.
T Consensus 121 K~Dl~~~~~~~~-------~~~~l~~~lg------~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 121 MLDIAEKQNIRI-------EIDALSARLG------CPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp CHHHHHHTTEEE-------CHHHHHHHHT------SCEEECCCGGGHHHHHHH
T ss_pred CccchhhhhHHH-------HHHHHHHhcC------CCEEEEEcCCCCCHHHHH
Confidence 999832110000 1122222333 579999999999999853
No 45
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=3.5e-19 Score=175.25 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=105.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+..+|+++|++|+|||||+|+|++..-.+. ...+++|++.....+..++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~------------------------------s~~~~tTr~~~~gi~~~~~~ 56 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISIT------------------------------SRKAQTTRHRIVGIHTEGAY 56 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEEC------------------------------CCCSSCCSSCEEEEEEETTE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcccc------------------------------CCCCCcceeeEEEEEEECCe
Confidence 446899999999999999999974321111 11256676665666778889
Q ss_pred EEEEEeCCCCc-c--------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 144 RFTILDAPGHK-S--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 144 ~i~liDtpG~~-~--------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
.++|+||||+. . +...+..++..+|++++|+|+.. .. .+++..+..+...+.| +|+++||+|
T Consensus 57 ~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~-------~~~~~i~~~l~~~~~P-~ilvlNK~D 127 (301)
T 1ega_A 57 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT-------PDDEMVLNKLREGKAP-VILAVNKVD 127 (301)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC-------HHHHHHHHHHHSSSSC-EEEEEESTT
T ss_pred eEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-------HHHHHHHHHHHhcCCC-EEEEEECcc
Confidence 99999999997 2 33445667789999999999976 21 4566666666656788 788999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+.. ..+.+. +.+..+.+..++ .+++|+||++|.|+..+.
T Consensus 128 ~~~---~~~~~~---~~l~~l~~~~~~-----~~~i~iSA~~g~~v~~l~ 166 (301)
T 1ega_A 128 NVQ---EKADLL---PHLQFLASQMNF-----LDIVPISAETGLNVDTIA 166 (301)
T ss_dssp TCC---CHHHHH---HHHHHHHTTSCC-----SEEEECCTTTTTTHHHHH
T ss_pred cCc---cHHHHH---HHHHHHHHhcCc-----CceEEEECCCCCCHHHHH
Confidence 832 123332 333333333443 268999999999998853
No 46
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=2.2e-18 Score=178.54 Aligned_cols=147 Identities=20% Similarity=0.286 Sum_probs=100.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|.||+|||||+|+|+.....+. +..+|+|+|.....+++.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v------------------------------~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV------------------------------EDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee------------------------------cCCCCCccceeeEEEEECCeEE
Confidence 5799999999999999999974432222 1238999999999999999999
Q ss_pred EEEeCCCCccc---------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 010985 146 TILDAPGHKSY---------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 146 ~liDtpG~~~~---------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~ 216 (496)
.|+||||...+ ...+..++..||++|+|+|+..+.. ....+....+...+.| +++|+||+|+.
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~-------~~d~~i~~~l~~~~~p-~ilv~NK~D~~ 123 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGIT-------KEDESLADFLRKSTVD-TILVANKAENL 123 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCC-------HHHHHHHHHHHHHTCC-EEEEEESCCSH
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEeCCCCc
Confidence 99999997642 3445567889999999999988742 2334445556667888 88999999982
Q ss_pred CCCccHHHHHHHHHHH-HHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 217 TVNWSKERYDEIESKM-TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l-~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... ..++ .++ ..+|+. +++++||++|.|+.++.+
T Consensus 124 -----~~~----~~~~~~~~-~~lg~~-----~~~~iSA~~g~gv~~L~~ 158 (439)
T 1mky_A 124 -----REF----EREVKPEL-YSLGFG-----EPIPVSAEHNINLDTMLE 158 (439)
T ss_dssp -----HHH----HHHTHHHH-GGGSSC-----SCEECBTTTTBSHHHHHH
T ss_pred -----ccc----HHHHHHHH-HhcCCC-----CEEEEeccCCCCHHHHHH
Confidence 110 1112 222 244542 478999999999998644
No 47
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=3.6e-19 Score=170.98 Aligned_cols=144 Identities=20% Similarity=0.167 Sum_probs=101.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|++|+|||||+|+|+.... .....+|+|++.....+.+++..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-------------------------------~v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-------------------------------RVGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-------------------------------EEEECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-------------------------------CccCCCCceEEEEEEEEEECCeEE
Confidence 5899999999999999999952210 112237899999999999999999
Q ss_pred EEEeCCCCcccHhH----------Hhhcc--ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 010985 146 TILDAPGHKSYVPN----------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 213 (496)
Q Consensus 146 ~liDtpG~~~~~~~----------~~~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~ 213 (496)
.|+||||+.++... +...+ ..+|++|+|+|++.. .........+..+++| +++|+||+
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---------~~~~~l~~~l~~~~~p-vilv~NK~ 120 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---------ERHLYLTSQLFELGKP-VVVALNMM 120 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---------HHHHHHHHHHTTSCSC-EEEEEECH
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---------hhHHHHHHHHHHcCCC-EEEEEECh
Confidence 99999999877531 11223 689999999999863 1334444555567888 89999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 214 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 214 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
|+......... +..+.+.+| +|++++||++|.|++++
T Consensus 121 Dl~~~~~~~~~-------~~~l~~~lg------~~vi~~SA~~g~gi~el 157 (256)
T 3iby_A 121 DIAEHRGISID-------TEKLESLLG------CSVIPIQAHKNIGIPAL 157 (256)
T ss_dssp HHHHHTTCEEC-------HHHHHHHHC------SCEEECBGGGTBSHHHH
T ss_pred hcCCcCCcHHH-------HHHHHHHcC------CCEEEEECCCCCCHHHH
Confidence 98322111111 112222233 57999999999999985
No 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.77 E-value=4e-18 Score=153.57 Aligned_cols=152 Identities=16% Similarity=0.082 Sum_probs=101.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+++|+...- . .+..+.++.+.....+...+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~ 52 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF--G-----------------------------KQYKQTIGLDFFLRRITLPG 52 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT--T-----------------------------HHHHHTTTSSEEEEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC--C-----------------------------CCCCCceeEEEEEEEEEeCC
Confidence 4568999999999999999999963211 0 01112233344444555554
Q ss_pred ---eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEeecc
Q 010985 143 ---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMD 214 (496)
Q Consensus 143 ---~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-----~~~~~~ivviNK~D 214 (496)
..+.|+||||++.|...+...+..+|++|+|+|++.+.. + ......+..+.. .+.|.+++|+||+|
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS---F---ENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp TEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred CCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 789999999999998888888899999999999987532 1 012222233332 15666789999999
Q ss_pred CCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 215 DHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 215 ~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+... ..+.+ +...+.+..+ ++++++||++|.|++++.
T Consensus 127 l~~~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 164 (178)
T 2hxs_A 127 LEHMRTIKPE-------KHLRFCQENG------FSSHFVSAKTGDSVFLCF 164 (178)
T ss_dssp GGGGCSSCHH-------HHHHHHHHHT------CEEEEECTTTCTTHHHHH
T ss_pred cccccccCHH-------HHHHHHHHcC------CcEEEEeCCCCCCHHHHH
Confidence 8431 12222 2223333333 479999999999999864
No 49
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.76 E-value=4.6e-18 Score=152.04 Aligned_cols=155 Identities=16% Similarity=0.197 Sum_probs=102.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++.++|+++|++|+|||||+++|+.. ... ....|+......+.+
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~ 48 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVG--EVV--------------------------------TTIPTIGFNVETVTY 48 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHS--SCC--------------------------------CCCCCSSEEEEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcC--CCC--------------------------------CcCCcCccceEEEEE
Confidence 4456799999999999999999999521 110 011233334455667
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 216 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~ 216 (496)
.+..+.|+||||+.+|...+...+..+|++|+|+|++.+.. + ....+.+..+.. .+.| +++|+||+|+.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 121 (171)
T 1upt_A 49 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR---I---GISKSELVAMLEEEELRKAI-LVVFANKQDME 121 (171)
T ss_dssp TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhCCCE-EEEEEECCCCc
Confidence 78999999999999998888888899999999999987621 0 112222222221 3566 89999999994
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 217 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... . .+++...+... .+. ...++++++||++|.|++++.+
T Consensus 122 ~~~-~---~~~~~~~~~~~----~~~-~~~~~~~~~Sa~~~~gi~~l~~ 161 (171)
T 1upt_A 122 QAM-T---SSEMANSLGLP----ALK-DRKWQIFKTSATKGTGLDEAME 161 (171)
T ss_dssp TCC-C---HHHHHHHHTGG----GCT-TSCEEEEECCTTTCTTHHHHHH
T ss_pred CCC-C---HHHHHHHhCch----hcc-CCceEEEECcCCCCcCHHHHHH
Confidence 321 1 12222222111 011 1246899999999999998643
No 50
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.76 E-value=2.7e-18 Score=156.96 Aligned_cols=152 Identities=17% Similarity=0.232 Sum_probs=104.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|.+|+|||||+++|+...-. ......|+|.+..... .+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~t~~~~~~~---~~ 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA------------------------------FVSKTPGKTRSINFYL---VN 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS------------------------------CCCSSCCCCCCEEEEE---ET
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc------------------------------cccCCCCCccCeEEEE---EC
Confidence 45689999999999999999999633211 0111245555543322 24
Q ss_pred eEEEEEeCCCC----------ccc---HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 010985 143 TRFTILDAPGH----------KSY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 209 (496)
Q Consensus 143 ~~i~liDtpG~----------~~~---~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivv 209 (496)
..+.++||||. ..| .......+..+|++++|+|+..+.. ......+..+...++| +++|
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~v 139 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ-------DSDLMMVEWMKSLNIP-FTIV 139 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEEE
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EEEE
Confidence 56889999993 223 3445555667799999999987632 2344555667777888 8999
Q ss_pred EeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 210 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 210 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+||+|+.. .+..+...+++...+...+ .++++++||++|.|++++.
T Consensus 140 ~nK~Dl~~----~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~ 185 (195)
T 3pqc_A 140 LTKMDKVK----MSERAKKLEEHRKVFSKYG-----EYTIIPTSSVTGEGISELL 185 (195)
T ss_dssp EECGGGSC----GGGHHHHHHHHHHHHHSSC-----CSCEEECCTTTCTTHHHHH
T ss_pred EEChhcCC----hHHHHHHHHHHHHHHhhcC-----CCceEEEecCCCCCHHHHH
Confidence 99999842 2334455566666666543 3579999999999999854
No 51
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=8.2e-18 Score=151.82 Aligned_cols=154 Identities=15% Similarity=0.166 Sum_probs=95.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+++|+...-. .....+.++.+.....+..+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 56 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFL------------------------------AGTFISTVGIDFRNKVLDVD 56 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC------------------------------CCCCCCCCSCEEEEEEEEET
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCC------------------------------CCCcCCceeeEEEEEEEEEC
Confidence 456799999999999999999999632210 00112334444444444555
Q ss_pred C--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCC
Q 010985 142 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 216 (496)
Q Consensus 142 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~ 216 (496)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.+... ......+..+.. .++| +++|+||+|+.
T Consensus 57 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 129 (180)
T 2g6b_A 57 GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF------DNIQAWLTEIHEYAQHDVA-LMLLGNKVDSA 129 (180)
T ss_dssp TEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSCTTCE-EEEEEECCSTT
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCCc-EEEEEECcccC
Confidence 5 4789999999999988888888999999999999875320 112223333333 3566 89999999995
Q ss_pred CCC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 217 TVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 217 ~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... ...+. ...+.+..+ ++++++||++|.|++++.+
T Consensus 130 ~~~~~~~~~-------~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 130 HERVVKRED-------GEKLAKEYG------LPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp SCCCSCHHH-------HHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred cccccCHHH-------HHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 321 12222 222333333 4699999999999998643
No 52
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=5.3e-18 Score=155.39 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=103.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+.++|+++|.+|+|||||+++|+... ... ......|.+.......+...
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 70 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDH--FDH---------------------------NISPTIGASFMTKTVPCGNE 70 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCC--CCT---------------------------TCCCCSSEEEEEEEEECSSS
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCC--CCC---------------------------CcCCCcceeEEEEEEEeCCE
Confidence 3457999999999999999999996321 000 01112455555554555555
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~ 218 (496)
...+.|+||||+.+|...+...+..+|++|+|+|++..... ......+..+... ++| +++|+||+|+...
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~------~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF------YTLKKWVKELKEHGPENIV-MAIAGNKCDLSDI 143 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHH------HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHH------HHHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 67899999999999988888888999999999999876320 1122233333333 566 8999999998421
Q ss_pred -CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 219 -NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 -~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.... +++..+++.. .++++++||++|.|++++
T Consensus 144 ~~v~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 144 REVPL-------KDAKEYAESI------GAIVVETSAKNAINIEEL 176 (192)
T ss_dssp CCSCH-------HHHHHHHHTT------TCEEEECBTTTTBSHHHH
T ss_pred cccCH-------HHHHHHHHHc------CCEEEEEeCCCCcCHHHH
Confidence 1111 2233344443 357999999999999985
No 53
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.76 E-value=1.4e-18 Score=156.51 Aligned_cols=145 Identities=18% Similarity=0.186 Sum_probs=98.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++..+|+++|++|+|||||+++|........ ...+|+|++.....+..++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~ 51 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIV------------------------------TDIAGTTRDVLREHIHIDG 51 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCC------------------------------CSSTTCCCSCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccee------------------------------eCCCCceeceeeEEEEECC
Confidence 3568999999999999999999963221111 1126788887777788888
Q ss_pred eEEEEEeCCCCccc--------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEe
Q 010985 143 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVN 211 (496)
Q Consensus 143 ~~i~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviN 211 (496)
..+.++||||++++ +..+...+..+|++++|+|++..... ...+.+..+... ++| +++|+|
T Consensus 52 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~-------~~~~~~~~~~~~~~~~~p-~ilv~N 123 (172)
T 2gj8_A 52 MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAV-------DPAEIWPEFIARLPAKLP-ITVVRN 123 (172)
T ss_dssp EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCC-------SHHHHCHHHHHHSCTTCC-EEEEEE
T ss_pred eEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH-------HHHHHHHHHHHhcccCCC-EEEEEE
Confidence 89999999998764 12233457899999999999876421 222223333322 567 899999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
|+|+...... +.+ ....+++++||++|.|++++.
T Consensus 124 K~Dl~~~~~~-------------~~~------~~~~~~~~~SA~~g~gv~~l~ 157 (172)
T 2gj8_A 124 KADITGETLG-------------MSE------VNGHALIRLSARTGEGVDVLR 157 (172)
T ss_dssp CHHHHCCCCE-------------EEE------ETTEEEEECCTTTCTTHHHHH
T ss_pred CccCCcchhh-------------hhh------ccCCceEEEeCCCCCCHHHHH
Confidence 9998321100 000 014689999999999999853
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.76 E-value=4.6e-18 Score=151.76 Aligned_cols=150 Identities=17% Similarity=0.152 Sum_probs=98.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|++|+|||||+++|+... .. ....+.++.+.....+..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK--FN-----------------------------PSFITTIGIDFKIKTVDINGKK 51 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC--CC-----------------------------C-------CCEEEEEEESSSCE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CC-----------------------------CCCCCccceeEEEEEEEECCEE
Confidence 5899999999999999999996321 11 11123344444445555554
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~ 219 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.+.. + ......+..+... +.| +++|+||+|+....
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 124 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT---F---TNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV 124 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCC
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCc
Confidence 578999999999987777777889999999999987531 0 1122333333332 566 89999999984332
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
...+.. ..+.+..+ ++++++||++|.|++++..
T Consensus 125 ~~~~~~-------~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 125 VTADQG-------EALAKELG------IPFIESSAKNDDNVNEIFF 157 (170)
T ss_dssp SCHHHH-------HHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred cCHHHH-------HHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 232222 23333333 4699999999999998643
No 55
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=2.6e-18 Score=178.06 Aligned_cols=158 Identities=22% Similarity=0.270 Sum_probs=105.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+|+|+.....+ ....+|+|++.....+.+++
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~------------------------------v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL------------------------------VSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------ECCCC------CCEEEEETT
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccc------------------------------cCCCCCCcCCceEEEEEECC
Confidence 356899999999999999999996332211 11237899999888899999
Q ss_pred eEEEEEeCCCCcccHh------------HHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 010985 143 TRFTILDAPGHKSYVP------------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 210 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~------------~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivvi 210 (496)
..+.++||||++.+.. .....+..+|++++|+|+..+.. .+.......+...+.+ +++|+
T Consensus 228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~-------~~~~~i~~~l~~~~~~-~ilv~ 299 (439)
T 1mky_A 228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT-------RQDQRMAGLMERRGRA-SVVVF 299 (439)
T ss_dssp EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEE
T ss_pred EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEE
Confidence 9999999999854422 22445678999999999998742 2344445556667877 89999
Q ss_pred eeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 211 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 211 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
||+|+... .....+++.+.+...+...+ ..+++++||++|.|++++.+
T Consensus 300 NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 300 NKWDLVVH--REKRYDEFTKLFREKLYFID-----YSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp ECGGGSTT--GGGCHHHHHHHHHHHCGGGT-----TSCEEECBTTTTBSHHHHHH
T ss_pred ECccCCCc--hhhHHHHHHHHHHHHhccCC-----CCcEEEEECCCCCCHHHHHH
Confidence 99998422 22223444444444444333 34799999999999998754
No 56
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.75 E-value=2.4e-18 Score=165.43 Aligned_cols=149 Identities=17% Similarity=0.181 Sum_probs=104.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+|+|+...- .....+|+|++.....+...+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~-------------------------------~~~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQ-------------------------------YVANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCC-------------------------------cccCCCCceEEEEEEEEEECC
Confidence 3568999999999999999999952110 011237899999888888889
Q ss_pred eEEEEEeCCCCcccHhH-----H-hhcc--ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 143 TRFTILDAPGHKSYVPN-----M-ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~-----~-~~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
..+.|+||||+..|... + ...+ ..+|++++|+|++... .....+..+..+++| +++|+||+|
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---------~~~~~~~~l~~~~~p-vilv~NK~D 121 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---------QSLYLLLEILEMEKK-VILAMTAID 121 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---------HHHHHHHHHHTTTCC-EEEEEECHH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---------hHHHHHHHHHhcCCC-EEEEEECcC
Confidence 99999999998877421 1 1112 5899999999998742 233344455557888 899999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+..... +......+.+.+| ++++++||++|.|++++.+
T Consensus 122 l~~~~~-------i~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 122 EAKKTG-------MKIDRYELQKHLG------IPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp HHHHTT-------CCBCHHHHHHHHC------SCEEECCTTTCTTHHHHHH
T ss_pred CCCccc-------hHHHHHHHHHHcC------CCEEEEEeeCCcCHHHHHH
Confidence 832110 0011222333333 5799999999999998643
No 57
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=152.46 Aligned_cols=153 Identities=17% Similarity=0.144 Sum_probs=104.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+++|+... ......++++.+.....+..+
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNT-------------------------------FSGSYITTIGVDFKIRTVEIN 54 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC----------------------------------CCTTTBSEEEEEEEEEET
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCC-------------------------------CCCccCCCceeEEEEEEEEEC
Confidence 3467999999999999999999995211 011223556666666677777
Q ss_pred C--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCC
Q 010985 142 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 142 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~~~ 217 (496)
+ ..+.|+||||+++|.......+..+|++|+|+|++.+... ......+..+... ++| +++|+||+|+..
T Consensus 55 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 55 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESF------VNVKRWLHEINQNCDDVC-RILVGNKNDDPE 127 (181)
T ss_dssp TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHCTTSE-EEEEEECTTCGG
T ss_pred CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCC-EEEEEECCCCch
Confidence 7 7799999999999988888888999999999999875320 0111222222222 355 899999999843
Q ss_pred CC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. ...+ +...+....+ ++++++||++|.|++++.+
T Consensus 128 ~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 128 RKVVETE-------DAYKFAGQMG------IQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp GCCSCHH-------HHHHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred hcccCHH-------HHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 21 1111 2222333333 4699999999999998644
No 58
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.75 E-value=1e-17 Score=150.81 Aligned_cols=154 Identities=15% Similarity=0.150 Sum_probs=101.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+++|+...- . ....+.++.+.....+..+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 52 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKF--D-----------------------------TQLFHTIGVEFLNKDLEVD 52 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCC--C-----------------------------C----CCSEEEEEEEEEET
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCC--C-----------------------------CCCCCceeeeEEEEEEEEC
Confidence 34578999999999999999999963211 0 1112334444444555555
Q ss_pred C--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-------cCCceEEEEEee
Q 010985 142 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVNK 212 (496)
Q Consensus 142 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-------~~~~~~ivviNK 212 (496)
+ ..+.|+||||+.+|...+...+..+|++++|+|++.+... . .....+..+.. .++| +++|+||
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK 125 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSF---Q---NLSNWKKEFIYYADVKEPESFP-FVILGNK 125 (177)
T ss_dssp TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHH---H---THHHHHHHHHHHHTCSCTTTSC-EEEEEEC
T ss_pred CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHH---H---HHHHHHHHHHHHccccccCCCc-EEEEEEC
Confidence 5 5899999999999988888888999999999999875321 0 11112222221 3556 8999999
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 213 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 213 ~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+|+.......+. +..+.+.. ...+++++||++|.|++++.+
T Consensus 126 ~Dl~~~~~~~~~-------~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 166 (177)
T 1wms_A 126 IDISERQVSTEE-------AQAWCRDN-----GDYPYFETSAKDATNVAAAFE 166 (177)
T ss_dssp TTCSSCSSCHHH-------HHHHHHHT-----TCCCEEECCTTTCTTHHHHHH
T ss_pred CcccccccCHHH-------HHHHHHhc-----CCceEEEEeCCCCCCHHHHHH
Confidence 998532223222 22233321 135799999999999998643
No 59
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.75 E-value=4.7e-18 Score=154.07 Aligned_cols=152 Identities=17% Similarity=0.158 Sum_probs=80.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+...- ..+..+.++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~ 54 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF-------------------------------NSTFISTIGIDFKIRTIELDG 54 (183)
T ss_dssp SEEEEEEEECCCCC-----------------------------------------------CHHHHHCEEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCcccceeEEEEEEECC
Confidence 3568999999999999999999952210 011124455566555666666
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+.+|...+...+..+|++|+|+|++.... + ....+.+..+... ++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (183)
T 2fu5_C 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS---F---DNIRNWIRNIEEHASADVE-KMILGNKCDVND 127 (183)
T ss_dssp EEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEEC--CCS
T ss_pred EEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccCCc
Confidence 789999999999998777778889999999999987521 1 1222233333332 456 899999999943
Q ss_pred C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ..+.+. +..+.+..+ ++++++||++|.|++++..
T Consensus 128 ~~~v~~~~-------~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 128 KRQVSKER-------GEKLALDYG------IKFMETSAKANINVENAFF 163 (183)
T ss_dssp CCCSCHHH-------HHHHHHHHT------CEEEECCC---CCHHHHHH
T ss_pred cCcCCHHH-------HHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 2 122222 223334433 4799999999999998644
No 60
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.75 E-value=7.6e-18 Score=154.91 Aligned_cols=103 Identities=18% Similarity=0.275 Sum_probs=71.3
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEeeccCCCCCcc
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~~~~~~ivviNK~D~~~~~~~ 221 (496)
..+.|+||||+.+|...+...+..+|++|+|+|++.+... ......+..+.. .+.| +++|+||+|+......
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~------~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~ 165 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTL------DRAKTWVNQLKISSNYI-IILVANKIDKNKFQVD 165 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHH------HHHHHHHHHHHhhCCCc-EEEEEECCCcccccCC
Confidence 7899999999999988888888999999999999876321 011222333333 4555 9999999995222222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. +++..+++.. .++++++||++|.|++++.+
T Consensus 166 ~-------~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~ 196 (208)
T 3clv_A 166 I-------LEVQKYAQDN------NLLFIQTSAKTGTNIKNIFY 196 (208)
T ss_dssp H-------HHHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred H-------HHHHHHHHHc------CCcEEEEecCCCCCHHHHHH
Confidence 2 2333344443 35799999999999998643
No 61
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=156.17 Aligned_cols=157 Identities=17% Similarity=0.206 Sum_probs=102.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
...+.++|+++|++|+|||||+++|+...... .....|+......+..
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------------------------~~~~~t~~~~~~~~~~ 64 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQS--------------------------------QNILPTIGFSIEKFKS 64 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCC--------------------------------SSCCCCSSEEEEEEEC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCC--------------------------------CCcCCccceeEEEEEE
Confidence 34557999999999999999999995321100 0122444445556777
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEeecc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 214 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~------~~~~~~ivviNK~D 214 (496)
++..+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 137 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR---M---VVAKEELDTLLNHPDIKHRRIP-ILFFANKMD 137 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHSTTTTTSCCC-EEEEEECTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhccCCCe-EEEEEeCcC
Confidence 78999999999999998888888899999999999987521 0 122233333332 3566 899999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+... ... +++.+.+. +..+. ...++++++||++|.|++++.+
T Consensus 138 l~~~-~~~---~~~~~~~~--~~~~~---~~~~~~~~~Sa~~~~gi~~l~~ 179 (190)
T 2h57_A 138 LRDA-VTS---VKVSQLLC--LENIK---DKPWHICASDAIKGEGLQEGVD 179 (190)
T ss_dssp STTC-CCH---HHHHHHHT--GGGCC---SSCEEEEECBTTTTBTHHHHHH
T ss_pred cccC-CCH---HHHHHHhC--hhhcc---CCceEEEEccCCCCcCHHHHHH
Confidence 9432 122 22222221 11111 1256899999999999998643
No 62
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.75 E-value=4.3e-18 Score=154.81 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=97.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+++|+... ... ...+++.+.....+..++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~~ 49 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNH--FVD------------------------------EYDPTIEDSYRKQVVIDG 49 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSS--CCC------------------------------CCCTTCCEEEEEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCC--CCC------------------------------CCCCCchheEEEEEEECC
Confidence 356899999999999999999996321 110 012333333334444555
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 216 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~ 216 (496)
..+.|+||||+++|.......+..+|++++|+|++..... ......+..+.. .++| +++|+||+|+.
T Consensus 50 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 122 (189)
T 4dsu_A 50 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF------EDIHHYREQIKRVKDSEDVP-MVLVGNKCDLP 122 (189)
T ss_dssp EEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHH------HHHHHHHHHHHHHTTCSCCC-EEEEEECTTSS
T ss_pred cEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCCc-EEEEEECccCc
Confidence 4477899999999988887888899999999999875210 011222222222 2567 89999999996
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 217 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
......+...+ +.+..+ .+++++||++|.|++++.+
T Consensus 123 ~~~~~~~~~~~-------~~~~~~------~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 123 SRTVDTKQAQD-------LARSYG------IPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp SCSSCHHHHHH-------HHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred ccccCHHHHHH-------HHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 44333333322 233332 4699999999999998654
No 63
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=5.7e-18 Score=155.13 Aligned_cols=153 Identities=13% Similarity=0.185 Sum_probs=95.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+...- .. ......|+|++.....+ +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~t~~~~~~~~---~ 68 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKN--LA---------------------------RTSSKPGKTQTLNFYII---N 68 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEEE---T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC--cc---------------------------ccCCCCCceeeEEEEEE---C
Confidence 4579999999999999999999963210 00 01112556665544333 3
Q ss_pred eEEEEEeCCC----------CcccHh---HHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 010985 143 TRFTILDAPG----------HKSYVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 209 (496)
Q Consensus 143 ~~i~liDtpG----------~~~~~~---~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivv 209 (496)
..+.|+|||| +..|.. .....+..+|++++|+|++.+.. ....+.+..+...++| +++|
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~v 140 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS-------NDDVQMYEFLKYYGIP-VIVI 140 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEEE
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEE
Confidence 4799999999 444432 33333445599999999988632 2333445566667788 8999
Q ss_pred EeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 210 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 210 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+||+|+... .......+++...+... ...+++++||++|.|++++.
T Consensus 141 ~nK~Dl~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~~l~ 186 (195)
T 1svi_A 141 ATKADKIPK----GKWDKHAKVVRQTLNID-----PEDELILFSSETKKGKDEAW 186 (195)
T ss_dssp EECGGGSCG----GGHHHHHHHHHHHHTCC-----TTSEEEECCTTTCTTHHHHH
T ss_pred EECcccCCh----HHHHHHHHHHHHHHccc-----CCCceEEEEccCCCCHHHHH
Confidence 999999432 22333344444433321 24689999999999999853
No 64
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.75 E-value=1.1e-17 Score=153.55 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=102.6
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 60 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 60 ~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
.......+|+++|++|+|||||+++|+...- .. . ....|+......++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~----------------------------~--~~~~t~~~~~~~~~ 59 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQS--SS----------------------------K--HITATVGYNVETFE 59 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC------------------------------------CCCCCSSEEEEEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCC--cc----------------------------c--ccccccceeEEEEE
Confidence 3556779999999999999999999952110 00 0 01123333344566
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-----------CCceEEE
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----------GVTKLLL 208 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-----------~~~~~iv 208 (496)
..+..+.|+||||+++|...+...+..+|++|+|+|++.+.. + ....+.+..+... ++| +|+
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~~~~~p-iil 132 (199)
T 4bas_A 60 KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR---L---CVVKSEIQAMLKHEDIRRELPGGGRVP-FLF 132 (199)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTSHHHHSBCTTSCBCC-EEE
T ss_pred eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH---H---HHHHHHHHHHHhChhhhhcccccCCCC-EEE
Confidence 788999999999999998888888999999999999997631 0 1222223322222 667 899
Q ss_pred EEeeccCCCCCccHHHHHHHHHHHHH--HHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 209 VVNKMDDHTVNWSKERYDEIESKMTP--FLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 209 viNK~D~~~~~~~~~~~~~i~~~l~~--~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+||+|+.... . .+++.+.+.. +.+. ..++++++||++|.|++++.+
T Consensus 133 v~NK~Dl~~~~-~---~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g~gv~~l~~ 181 (199)
T 4bas_A 133 FANKMDAAGAK-T---AAELVEILDLTTLMGD------HPFVIFASNGLKGTGVHEGFS 181 (199)
T ss_dssp EEECTTSTTCC-C---HHHHHHHHTHHHHHTT------SCEEEEECBTTTTBTHHHHHH
T ss_pred EEECcCCCCCC-C---HHHHHHHhcchhhccC------CeeEEEEeeCCCccCHHHHHH
Confidence 99999994331 2 2223222221 1122 256899999999999998644
No 65
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.75 E-value=1.9e-18 Score=167.57 Aligned_cols=148 Identities=20% Similarity=0.190 Sum_probs=104.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.++|+++|++|+|||||+|+|+.... .....+|+|++.....+.+.+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 50 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-------------------------------HVGNWPGVTVEKKEGIMEYREK 50 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-------------------------------EEEECTTSSCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeEEEeeEEEEEECCc
Confidence 358999999999999999999952210 1123478899998889999999
Q ss_pred EEEEEeCCCCcccHh--------HHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC-CceEEEEEeecc
Q 010985 144 RFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMD 214 (496)
Q Consensus 144 ~i~liDtpG~~~~~~--------~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~-~~~~ivviNK~D 214 (496)
.+.|+||||+.+|.. ........+|++++|+|++.+. +....+..+..++ +| +++|+||+|
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---------~~~~~~~~~~~~~~~p-~ilv~NK~D 120 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---------RNLFLTLELFEMEVKN-IILVLNKFD 120 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---------HHHHHHHHHHHTTCCS-EEEEEECHH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---------hhHHHHHHHHhcCCCC-EEEEEEChh
Confidence 999999999888743 1112225799999999998752 4444555566677 77 899999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+.... .. ......+.+.+| ++++|+||++|.|+.++.+
T Consensus 121 l~~~~----~~---~~~~~~l~~~lg------~~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 121 LLKKK----GA---KIDIKKMRKELG------VPVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp HHHHH----TC---CCCHHHHHHHHS------SCEEECBGGGTBTHHHHHH
T ss_pred cCccc----cc---HHHHHHHHHHcC------CcEEEEEeCCCCCHHHHHH
Confidence 72110 00 001122222333 5799999999999988643
No 66
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.2e-17 Score=152.30 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=97.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++.++|+++|++|+|||||+++|+... .. ....|+......+..++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~ 59 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNE--VV--------------------------------HTSPTIGSNVEEIVINN 59 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS--CE--------------------------------EEECCSCSSCEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--CC--------------------------------cCcCCCccceEEEEECC
Confidence 456999999999999999999995211 00 01123334445566788
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.+.. + ....+.+..+.. .+.| +++|+||+|+...
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLIFANKQDVKEC 132 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCC
Confidence 999999999999988777778889999999999987631 1 122223323322 3566 8999999999432
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
... +++.+.+ ....+. ...++++++||++|.|++++.
T Consensus 133 -~~~---~~i~~~~----~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 133 -MTV---AEISQFL----KLTSIK-DHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp -CCH---HHHHHHH----TGGGCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred -CCH---HHHHHHh----Chhhhc-CCCcEEEEccCCCCcCHHHHH
Confidence 122 2222222 111111 124689999999999999853
No 67
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.75 E-value=1e-17 Score=152.16 Aligned_cols=152 Identities=19% Similarity=0.190 Sum_probs=103.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+.... .....+.++.+.....+..++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKF-------------------------------KDDSNHTIGVEFGSKIINVGG 56 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC-------------------------------CTTCCCCSEEEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCccceEEEEEEEEECC
Confidence 4569999999999999999999963211 011124455555555566665
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.+... ......+..+.. .++| +++|+||+|+..
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 129 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY------NALTNWLTDARMLASQNIV-IILCGNKKDLDA 129 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHH------HHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 6889999999999988888889999999999999875321 011222222222 3566 899999999842
Q ss_pred C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. .... .+...+.+.. .++++++||++|.|+.++.+
T Consensus 130 ~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 130 DREVTF-------LEASRFAQEN------ELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp GCCSCH-------HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred ccccCH-------HHHHHHHHHc------CCEEEEecCCCCCCHHHHHH
Confidence 1 1111 1222333333 35799999999999998644
No 68
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.74 E-value=3.7e-18 Score=152.54 Aligned_cols=145 Identities=23% Similarity=0.269 Sum_probs=95.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..+|+++|++|+|||||+++|+.... .....+|+|++.....+.+.+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~ 51 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-------------------------------YIGNWPGVTVEKKEGEFEYNGEK 51 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-------------------------------SCC-----CCCCCEEEEEETTEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-------------------------------eccCCCCcceeeeEEEEEECCcE
Confidence 47899999999999999999952110 01112567777766777778899
Q ss_pred EEEEeCCCCcccHh-----HH-hhcc--ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 010985 145 FTILDAPGHKSYVP-----NM-ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 145 i~liDtpG~~~~~~-----~~-~~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~ 216 (496)
+.++||||+.+|.. .+ ...+ ..+|++++|+|+... ......+..+...++| +++|.||+|+.
T Consensus 52 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---------~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 121 (165)
T 2wji_A 52 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLMEMGAN-LLLALNKMDLA 121 (165)
T ss_dssp EEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---------HHHHHHHHHHHHTTCC-EEEEEECHHHH
T ss_pred EEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---------hHhHHHHHHHHhcCCC-EEEEEEchHhc
Confidence 99999999887731 11 1222 379999999999763 1223333444556788 89999999983
Q ss_pred CC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 217 TV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 217 ~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. .... +...+.+..+ .+++++||++|.|++++.
T Consensus 122 ~~~~~~~--------~~~~~~~~~~------~~~~~~SA~~~~~v~~l~ 156 (165)
T 2wji_A 122 KSLGIEI--------DVDKLEKILG------VKVVPLSAAKKMGIEELK 156 (165)
T ss_dssp HHTTCCC--------CHHHHHHHHT------SCEEECBGGGTBSHHHHH
T ss_pred cccChhh--------HHHHHHHHhC------CCEEEEEcCCCCCHHHHH
Confidence 11 0110 1122222332 468999999999999853
No 69
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.74 E-value=1.3e-18 Score=180.18 Aligned_cols=145 Identities=22% Similarity=0.285 Sum_probs=95.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|++|+|||||+|+|+...-.+. +..+|+|+|.....+++.+..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v------------------------------~~~~g~T~d~~~~~~~~~~~~~ 53 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV------------------------------EDTPGVTRDRIYSSAEWLNYDF 53 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCCccceEEEEEEECCceE
Confidence 6899999999999999999953322211 2238999999988999999999
Q ss_pred EEEeCCCCc--------ccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 010985 146 TILDAPGHK--------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 146 ~liDtpG~~--------~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~ 217 (496)
.|+||||+. .+...+..++..||++|+|+|+..+.. ....+....+...+.| +++|+||+|+..
T Consensus 54 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~-------~~d~~~~~~l~~~~~p-vilv~NK~D~~~ 125 (436)
T 2hjg_A 54 NLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVNKLDNTE 125 (436)
T ss_dssp EEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHTTCCSC-EEEEEECCCC--
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccCcc
Confidence 999999985 455666677889999999999998743 2444555556666777 899999999832
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. ..+.++. .+|+. +++++||++|.|+.++.
T Consensus 126 ~~----------~~~~~~~-~lg~~-----~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 126 MR----------ANIYDFY-SLGFG-----EPYPISGTHGLGLGDLL 156 (436)
T ss_dssp -------------CCCSSG-GGSSC-----CCEECBTTTTBTHHHHH
T ss_pred ch----------hhHHHHH-HcCCC-----CeEEEeCcCCCChHHHH
Confidence 11 0111122 33432 57999999999999853
No 70
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.74 E-value=9.3e-18 Score=153.75 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=105.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+...- ..+..+.++.+.....+..++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 62 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY-------------------------------TESYISTIGVDFKIRTIELDG 62 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC-------------------------------CSCCCCCSSEEEEEEEEEETT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC-------------------------------CCCCCCcccceEEEEEEEECC
Confidence 4578999999999999999999963211 112235566666666666666
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+... ++| +++|+||+|+..
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLTT 135 (196)
T ss_dssp EEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 679999999999998888888899999999999987532 1 1222333333333 566 899999999843
Q ss_pred CC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. ...+ +...+.+..+ ++++++||++|.|++++..
T Consensus 136 ~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 136 KKVVDYT-------TAKEFADSLG------IPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp TCCSCHH-------HHHHHHHHTT------CCEEEECTTTCTTHHHHHH
T ss_pred ccccCHH-------HHHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Confidence 22 1111 2223333333 4799999999999998644
No 71
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.74 E-value=1.5e-17 Score=151.89 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=102.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+++|+...- .. ......|++.......+...
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~ 69 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSF--TP---------------------------AFVSTVGIDFKVKTVYRHDK 69 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCC--CC---------------------------SCCCCCCCEEEEEEEEETTE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCC--CC---------------------------CcCCceeEEEEEEEEEECCe
Confidence 34568999999999999999999963211 00 00111344444433333334
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~ 218 (496)
...+.|+||||+.+|...+...+..+|++|+|+|++.+.. + ......+..+... ++| +++|+||+|+...
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 142 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES---F---AAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDE 142 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccccc
Confidence 5789999999999998888888899999999999987532 1 1223333444443 566 8999999998422
Q ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ... +++..+.+..+ ++++++||++|.|++++.+
T Consensus 143 ~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 143 RVVPA-------EDGRRLADDLG------FEFFEASAKENINVKQVFE 177 (189)
T ss_dssp CCSCH-------HHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred cCCCH-------HHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 1 112 22333344443 4799999999999998644
No 72
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.74 E-value=2.4e-17 Score=148.81 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=99.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+++|+...- .....+.++.+.....+...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 57 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQF-------------------------------VEFQESTIGAAFFSQTLAVN 57 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCC-------------------------------TTTSCCCSCCSEEEEEEEET
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCC-------------------------------CCcCCCCceeEEEEEEEEEC
Confidence 34568999999999999999999963211 01111222222323333333
Q ss_pred --CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCC
Q 010985 142 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 216 (496)
Q Consensus 142 --~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~ 216 (496)
...+.|+||||+.+|...+...+..+|++|+|+|++.+.. + ....+.+..+... ++| +++|+||+|+.
T Consensus 58 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 130 (181)
T 2efe_B 58 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKSDLL 130 (181)
T ss_dssp TEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred CEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 4689999999999998888888899999999999987531 0 1223333334433 455 89999999984
Q ss_pred CCC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 217 TVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 217 ~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
... ... +++..+.+.. .++++++||++|.|++++
T Consensus 131 ~~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 131 DARKVTA-------EDAQTYAQEN------GLFFMETSAKTATNVKEI 165 (181)
T ss_dssp TTCCSCH-------HHHHHHHHHT------TCEEEECCSSSCTTHHHH
T ss_pred ccccCCH-------HHHHHHHHHc------CCEEEEEECCCCCCHHHH
Confidence 321 122 2233344443 357999999999999985
No 73
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.74 E-value=2.3e-17 Score=146.48 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=97.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|++|+|||||+++|+... ... ...|+......+...+..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE--IVT--------------------------------TIPTIGFNVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC--SSC--------------------------------CCCCSSCCEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--cCc--------------------------------ccCcCceeEEEEEECCEEE
Confidence 489999999999999999996321 000 1123333444566678999
Q ss_pred EEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCcc
Q 010985 146 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 146 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~~~~ 221 (496)
.|+||||+.+|...+...+..+|++++|+|++.+.. + ....+.+..+.. .+.| +++|+||+|+.... .
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~ 118 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---NEAREELMRMLAEDELRDAV-LLVFANKQDLPNAM-N 118 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-C
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCC-C
Confidence 999999999998877778899999999999987521 0 011222222221 1556 89999999994321 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.+++.+.+. ..... ...++++++||++|.|++++.
T Consensus 119 ---~~~~~~~~~----~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 119 ---AAEITDKLG----LHSLR-HRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ---HHHHHHHTT----GGGCS-SCCEEEEECBTTTTBTHHHHH
T ss_pred ---HHHHHHHhC----ccccc-CccEEEEEcccCCCcCHHHHH
Confidence 122222211 11111 124689999999999999853
No 74
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.74 E-value=7.5e-18 Score=149.64 Aligned_cols=150 Identities=18% Similarity=0.148 Sum_probs=96.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
+.++|+++|++|+|||||+++|+... .... ...++.+.....+..++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~ 49 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGT--FIEK------------------------------YDPTIEDFYRKEIEVDSS 49 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC--CCSC------------------------------CCTTCCEEEEEEEEETTE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCC--Cccc------------------------------CCCCcceeEEEEEEECCE
Confidence 35899999999999999999996321 1100 01111122233344444
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH-HH---cCCceEEEEEeeccCCC
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~-~~---~~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+.+|.......+..+|++++|+|+...... ......+..+ .. .+.| +++|+||+|+..
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 122 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSF------QDIKPMRDQIIRVKRYEKVP-VILVGNKVDLES 122 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHH------HHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHH------HHHHHHHHHHHHhcCCCCCC-EEEEEECCcccc
Confidence 4589999999999988888888899999999999875210 0112222222 22 3567 899999999842
Q ss_pred C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ....+ +...+.+..+ ++++++||++|.|++++.+
T Consensus 123 ~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 158 (167)
T 1kao_A 123 EREVSSS-------EGRALAEEWG------CPFMETSAKSKTMVDELFA 158 (167)
T ss_dssp GCCSCHH-------HHHHHHHHHT------SCEEEECTTCHHHHHHHHH
T ss_pred cccCCHH-------HHHHHHHHhC------CCEEEecCCCCcCHHHHHH
Confidence 1 11222 2223333333 4699999999999998643
No 75
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=1.1e-17 Score=149.15 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=97.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.++|+++|++|+|||||+++|+...- .. ......|.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDF--AE---------------------------NKEPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CT---------------------------TCCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------CCCCccceeEEEEEEEECCEEE
Confidence 358999999999999999999963211 00 0011123333333333332346
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCCc
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 220 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~~~ 220 (496)
.+.|+||||+.+|...+...+..+|++++|+|++.+... ......+..+.. .++| +++|+||+|+.....
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 125 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSF------IKARHWVKELHEQASKDII-IALVGNKIDXLQEGG 125 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSC
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHH------HHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccc
Confidence 899999999999988888888999999999999875210 011222222222 2556 889999999843211
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
..+.. .++...+.+.. .++++++||++|.|+.++
T Consensus 126 ~~~v~---~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 126 ERKVA---REEGEKLAEEK------GLLFFETSAKTGENVNDV 159 (170)
T ss_dssp CCCSC---HHHHHHHHHHH------TCEEEECCTTTCTTHHHH
T ss_pred ccCCC---HHHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 01000 11122233333 347999999999999985
No 76
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=155.78 Aligned_cols=161 Identities=18% Similarity=0.130 Sum_probs=95.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..+..++|+++|++|+|||||+++|+... .... .....|.+.......+..
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~ 74 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNE--FREN---------------------------ISATLGVDFQMKTLIVDG 74 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCC--CC-------------------------------------CEEEEEEETT
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCC--CCcc---------------------------CCCCccceeEEEEEEECC
Confidence 34557999999999999999999996321 1100 001123333332233333
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~ 217 (496)
....+.|+||||+.+|...+...+..+|++|+|+|++.+... ......+..+.. .++| +++|+||+|+..
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~------~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~ 147 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF------LNIREWVDMIEDAAHETVP-IMLVGNKADIRD 147 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHH------HTHHHHHHHHHHHC---CC-EEEEEECGGGHH
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHH------HHHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 346799999999999988888888999999999999875321 112222333333 2567 899999999831
Q ss_pred CCccHHHHHHH-HHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VNWSKERYDEI-ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~~~~~~~~~i-~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
... .+....+ .++...+.+.. .++++++||++|.|++++.
T Consensus 148 ~~~-~~~~~~v~~~~~~~~~~~~------~~~~~~~SA~~g~gv~el~ 188 (199)
T 2p5s_A 148 TAA-TEGQKCVPGHFGEKLAMTY------GALFCETSAKDGSNIVEAV 188 (199)
T ss_dssp HHH-HTTCCCCCHHHHHHHHHHH------TCEEEECCTTTCTTHHHHH
T ss_pred ccc-cccccccCHHHHHHHHHHc------CCeEEEeeCCCCCCHHHHH
Confidence 100 0000000 11222333333 3579999999999999853
No 77
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.74 E-value=2.2e-18 Score=176.35 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=105.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+..... ..+..+|+|++.....+++.+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~ 81 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVS------------------------------IVSDYAGTTTDPVYKSMELHP 81 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEETT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCC------------------------------ccCCCCCeeeeeEEEEEEECC
Confidence 45689999999999999999998532211 123347899999888888877
Q ss_pred e-EEEEEeCCCCccc-------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 143 T-RFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 143 ~-~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
. .++|+||||+.+| ...+...+..+|++|+|+|+ +. ..++.+.+..+...++| +|+|+||+|
T Consensus 82 ~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~-------~~~~~~~l~~l~~~~~p-iIvV~NK~D 151 (423)
T 3qq5_A 82 IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--AP-------TPYEDDVVNLFKEMEIP-FVVVVNKID 151 (423)
T ss_dssp TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SC-------CHHHHHHHHHHHHTTCC-EEEECCCCT
T ss_pred CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CC-------hHHHHHHHHHHHhcCCC-EEEEEeCcC
Confidence 5 9999999999877 34466678899999999999 32 14778888888888998 899999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+...... +. ...+.+.+ .++++++||++|.|++++.
T Consensus 152 l~~~~~~-----~~---~~~l~~~~------g~~v~~vSAktg~gI~eL~ 187 (423)
T 3qq5_A 152 VLGEKAE-----EL---KGLYESRY------EAKVLLVSALQKKGFDDIG 187 (423)
T ss_dssp TTTCCCT-----HH---HHHSSCCT------TCCCCCCSSCCTTSTTTHH
T ss_pred CCCccHH-----HH---HHHHHHHc------CCCEEEEECCCCCCHHHHH
Confidence 9544321 11 11222222 3578999999999999853
No 78
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=149.47 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=89.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
..++|+++|++|+|||||+++|+...-. ......|.+.......+.....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQER------------------------------DLHEQLGEDVYERTLTVDGEDT 52 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCc------------------------------cccCccccceeEEEEEECCEEE
Confidence 4689999999999999999999522110 0011244544333322322235
Q ss_pred EEEEEeCCCCccc--HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEeeccCCC
Q 010985 144 RFTILDAPGHKSY--VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 144 ~i~liDtpG~~~~--~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~----~~~~~ivviNK~D~~~ 217 (496)
.+.++||||+..+ .......++.+|++++|+|++.... + ....+.+..+... ++| +++|+||+|+..
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~ 125 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS---F---ESASELRIQLRRTHQADHVP-IILVGNKADLAR 125 (175)
T ss_dssp EEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHH---H---HHHHHHHHHHHHCC----CC-EEEEEECTTCTT
T ss_pred EEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhhccCCCC-EEEEEEChhhcc
Confidence 7899999999874 3333345678999999999986421 0 0122223333333 677 899999999943
Q ss_pred C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ..+.+ +...+.... .++++++||++|.|++++.+
T Consensus 126 ~~~v~~~-------~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 126 CREVSVE-------EGRACAVVF------DCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp TCCSCHH-------HHHHHHHHH------TSEEEECBTTTTBSHHHHHH
T ss_pred ccccCHH-------HHHHHHHHc------CCeEEEEecCCCCCHHHHHH
Confidence 2 12221 122223333 24799999999999998643
No 79
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=6.9e-18 Score=153.46 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=100.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++.++|+++|++|+|||||+++|+... .. ....|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD--------------------------------TISPTLGFNIKTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS--------------------------------SCCCCSSEEEEEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC--------------------------------cccccCccceEEEEECC
Confidence 467999999999999999999995321 00 01123333344566678
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||+++|...+...+..+|++++|+|++.+.. + ....+.+..+.. .+.| +++|+||+|+...
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR---M---QDCQRELQSLLVEERLAGAT-LLIFANKQDLPGA 134 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCC
Confidence 999999999999998888888899999999999987531 0 112222222222 2466 8999999999432
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. . .+++.+ .+....+. ...++++++||++|.|++++.+
T Consensus 135 ~-~---~~~~~~----~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (186)
T 1ksh_A 135 L-S---CNAIQE----ALELDSIR-SHHWRIQGCSAVTGEDLLPGID 172 (186)
T ss_dssp C-C---HHHHHH----HTTGGGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred C-C---HHHHHH----HhChhhcc-CCceEEEEeeCCCCCCHHHHHH
Confidence 1 1 122222 22111011 1256899999999999998643
No 80
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.74 E-value=9.9e-18 Score=149.55 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=100.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+++|+...- .. ......|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSF--DP---------------------------NINPTIGASFMTKTVQYQNEL 54 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCC--CT---------------------------TCCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC--CC---------------------------CCCCceeEEEEEEEEEECCeE
Confidence 3568999999999999999999963211 00 011124555544444444445
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~ 219 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.+... ......+..+... ++| +++|.||+|+....
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETF------STLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGC
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhCCCCCc-EEEEEECCcccccc
Confidence 7899999999999988888888999999999999875320 1122233334433 345 88899999984321
Q ss_pred -ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 220 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 220 -~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
... ++...+.+.. ..+++++||++|.|++++
T Consensus 128 ~v~~-------~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l 159 (170)
T 1z0j_A 128 EVME-------RDAKDYADSI------HAIFVETSAKNAININEL 159 (170)
T ss_dssp CSCH-------HHHHHHHHHT------TCEEEECBTTTTBSHHHH
T ss_pred ccCH-------HHHHHHHHHc------CCEEEEEeCCCCcCHHHH
Confidence 111 1222333333 357999999999999985
No 81
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=1.2e-17 Score=152.43 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=101.5
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEE
Q 010985 59 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 138 (496)
Q Consensus 59 ~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~ 138 (496)
....++.++|+++|++|+|||||+++|+... ... ....|+......+
T Consensus 16 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~-------------------------------~~~~t~~~~~~~~ 62 (188)
T 1zd9_A 16 PRGSKEEMELTLVGLQYSGKTTFVNVIASGQ--FNE-------------------------------DMIPTVGFNMRKI 62 (188)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHHSC--CCC-------------------------------SCCCCCSEEEEEE
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHHcCC--CCC-------------------------------ccCCCCceeEEEE
Confidence 3455678999999999999999999996321 100 0112333333456
Q ss_pred EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeecc
Q 010985 139 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 214 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D 214 (496)
...+..+.|+||||+.+|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~D 135 (188)
T 1zd9_A 63 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEK---I---EASKNELHNLLDKPQLQGIP-VLVLGNKRD 135 (188)
T ss_dssp EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCC-EEEEEECTT
T ss_pred EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCC-EEEEEECCC
Confidence 6788999999999999998888888899999999999987521 1 112222222221 3567 899999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+.... .. +++.+.+. ...+. ....+++++||++|.|++++
T Consensus 136 l~~~~-~~---~~~~~~~~----~~~~~-~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 136 LPGAL-DE---KELIEKMN----LSAIQ-DREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp STTCC-CH---HHHHHHTT----GGGCC-SSCEEEEECCTTTCTTHHHH
T ss_pred CccCC-CH---HHHHHHhC----hhhhc-cCCeeEEEEECCCCCCHHHH
Confidence 94321 22 12222211 11111 12568999999999999985
No 82
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.73 E-value=1.4e-17 Score=154.06 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=100.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.+..++|+++|++|+|||||+++|+...-. ....+.++.+.....+..+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 53 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVMVD 53 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCCSEEEEEEEEESS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCC-------------------------------CCCCCcccceEEEEEEEEC
Confidence 346799999999999999999999632210 0111334444444445544
Q ss_pred C--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH-HH------cCCceEEEEEee
Q 010985 142 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT------LGVTKLLLVVNK 212 (496)
Q Consensus 142 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~-~~------~~~~~~ivviNK 212 (496)
+ ..+.|+||||+.+|...+...+..+|++|+|+|++.+... ......+..+ .. .++| +++|+||
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 126 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTF------KTLDSWRDEFLIQASPRDPENFP-FVVLGNK 126 (207)
T ss_dssp SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHHCCSSGGGSC-EEEEEEC
T ss_pred CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHH------HHHHHHHHHHHHhcccccCCCCc-EEEEEEC
Confidence 4 6799999999999887777788899999999999875321 0111222212 11 3567 8999999
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 213 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 213 ~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+|+.......+. +..+.+.. ...+++++||++|.|++++.+
T Consensus 127 ~Dl~~~~~~~~~-------~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~ 167 (207)
T 1vg8_A 127 IDLENRQVATKR-------AQAWCYSK-----NNIPYFETSAKEAINVEQAFQ 167 (207)
T ss_dssp TTSSCCCSCHHH-------HHHHHHHT-----TSCCEEECBTTTTBSHHHHHH
T ss_pred CCCcccccCHHH-------HHHHHHhc-----CCceEEEEeCCCCCCHHHHHH
Confidence 999532222222 22222211 145799999999999998654
No 83
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.73 E-value=2.7e-17 Score=146.62 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=99.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+... ... ......|.+.......+...+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQ--FHE---------------------------FQESTIGAAFLTQTVCLDDTT 54 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSC--CCT---------------------------TCCCCSSEEEEEEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCC--CCC---------------------------CCCCccceEEEEEEEEECCEE
Confidence 356899999999999999999996321 110 011123444444434444346
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~~ 219 (496)
..+.|+||||+.+|...+...+..+|++|+|+|++.+.. + ......+..+... ++| +++|.||+|+....
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES---F---ARAKNWVKELQRQASPNIV-IALSGNKADLANKR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGC
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc
Confidence 789999999999998888888899999999999987521 0 1222233333332 455 88889999984211
Q ss_pred -ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 220 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 220 -~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
... ++...+.+.. .++++++||++|.|++++
T Consensus 128 ~~~~-------~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 128 AVDF-------QEAQSYADDN------SLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp CSCH-------HHHHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred ccCH-------HHHHHHHHHc------CCeEEEEeCCCCCCHHHH
Confidence 111 1222333333 357999999999999985
No 84
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=153.49 Aligned_cols=155 Identities=19% Similarity=0.152 Sum_probs=101.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
.....++|+++|.+|+|||||+++|+...- .....+.++.+.....+..
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 70 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTF-------------------------------CEACKSTVGVDFKIKTVEL 70 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC---------------------------------------CCTTEEEEEEEEEE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CcCCCCccceeEEEEEEEE
Confidence 345578999999999999999999952110 0111233444444445555
Q ss_pred CC--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccC
Q 010985 141 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~ 215 (496)
++ ..+.|+||||+++|...+...+..+|++|+|+|++.+... ......+..+... ++| +++|+||+|+
T Consensus 71 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~------~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl 143 (192)
T 2il1_A 71 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETF------DDLPKWMKMIDKYASEDAE-LLLVGNKLDC 143 (192)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred CCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhcCCCCc-EEEEEECccc
Confidence 55 5789999999999988888888999999999999875321 1122223333332 556 8999999998
Q ss_pred CCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... ....+ +...+.+.+ ...+++++||++|.|++++.+
T Consensus 144 ~~~~~v~~~-------~~~~~~~~~-----~~~~~~~~SA~~g~gi~~l~~ 182 (192)
T 2il1_A 144 ETDREITRQ-------QGEKFAQQI-----TGMRFCEASAKDNFNVDEIFL 182 (192)
T ss_dssp GGGCCSCHH-------HHHHHHHTS-----TTCEEEECBTTTTBSHHHHHH
T ss_pred ccccccCHH-------HHHHHHHhc-----CCCeEEEEeCCCCCCHHHHHH
Confidence 422 11111 222333332 135799999999999998643
No 85
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.73 E-value=5.5e-18 Score=152.56 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=100.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+++|+..... . ......|.+.......+...
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~---------------------------~~~~t~~~~~~~~~~~~~~~ 62 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFM--A---------------------------DCPHTIGVEFGTRIIEVSGQ 62 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC--S---------------------------SCTTSCCCCEEEEEEEETTE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCC--C---------------------------CCCCccceEEEEEEEEECCe
Confidence 445799999999999999999999632210 0 00011233333333333323
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~ 218 (496)
...+.|+||||+.+|...+...+..+|++|+|+|++.+... ......+..+.. .+.| +++|+||+|+...
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 135 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY------NHLSSWLTDARNLTNPNTV-IILIGNKADLEAQ 135 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHH------HHHHHHHHHHHHhcCCCCc-EEEEEECcccccc
Confidence 46799999999999988888888999999999999875321 111222222332 3556 8999999998421
Q ss_pred -CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 -NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 -~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.... +++..+++..+ ++++++||++|.|++++.
T Consensus 136 ~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 136 RDVTY-------EEAKQFAEENG------LLFLEASAKTGENVEDAF 169 (179)
T ss_dssp CCSCH-------HHHHHHHHHTT------CEEEECCTTTCTTHHHHH
T ss_pred cccCH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 1111 22333444443 579999999999999853
No 86
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.73 E-value=3.7e-17 Score=151.06 Aligned_cols=154 Identities=15% Similarity=0.115 Sum_probs=100.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+++|+... .. .+..+.++.+.....+..+
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~ 74 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGA--FS-----------------------------ERQGSTIGVDFTMKTLEIQ 74 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSC--C---------------------------------------CEEEEEEEET
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCC--CC-----------------------------CCCCCCcceEEEEEEEEEC
Confidence 4556899999999999999999995321 11 0111223344444555665
Q ss_pred C--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCC
Q 010985 142 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 216 (496)
Q Consensus 142 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~ 216 (496)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~ 147 (201)
T 2hup_A 75 GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS---F---LSVPHWIEDVRKYAGSNIV-QLLIGNKSDLS 147 (201)
T ss_dssp TEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCccc
Confidence 5 689999999999998888888899999999999987521 1 122233333333 2456 88999999984
Q ss_pred CC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 217 TV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 217 ~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. .... +++..+.+..++. +++++||++|.|++++.+
T Consensus 148 ~~~~v~~-------~~~~~~~~~~~~~-----~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 148 ELREVSL-------AEAQSLAEHYDIL-----CAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp GGCCSCH-------HHHHHHHHHTTCS-----EEEECBTTTTBSHHHHHH
T ss_pred cccccCH-------HHHHHHHHHcCCC-----EEEEEeCCCCCCHHHHHH
Confidence 21 1122 2233444444431 799999999999998643
No 87
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.73 E-value=4e-17 Score=148.90 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=100.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeee-eEEEEe
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFET 140 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~-~~~~~~ 140 (496)
....++|+++|++|+|||||+++|+... ... ...+.+..+.. ...+..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~ 56 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGK--FNS-----------------------------KFITTVGIDFREKRVVYR 56 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSC--CCC-----------------------------SCCCCCSEEEEEEEEEEC
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCC--CCc-----------------------------CcccccceeeeeEEEEEe
Confidence 3457999999999999999999996321 100 00111222222 223333
Q ss_pred C-----------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCce
Q 010985 141 E-----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 205 (496)
Q Consensus 141 ~-----------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~ 205 (496)
. ...+.|+||||+++|...+...+..+|++|+|+|++.+... ......+..+.. .++|
T Consensus 57 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p- 129 (195)
T 3bc1_A 57 ANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSF------LNVRNWISQLQMHAYSENPD- 129 (195)
T ss_dssp TTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSSSSSCC-
T ss_pred cCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCCC-
Confidence 3 35899999999999998888889999999999999875321 112233333333 3566
Q ss_pred EEEEEeeccCCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 206 LLLVVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 206 ~ivviNK~D~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+++|+||+|+... ....+ ++..+.+..+ ++++++||++|.|++++.+
T Consensus 130 iilv~nK~Dl~~~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 177 (195)
T 3bc1_A 130 IVLCGNKSDLEDQRAVKEE-------EARELAEKYG------IPYFETSAANGTNISHAIE 177 (195)
T ss_dssp EEEEEECTTCGGGCCSCHH-------HHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcccccccccCHH-------HHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 8999999998431 11222 2233333433 4689999999999998644
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.73 E-value=2.5e-17 Score=151.01 Aligned_cols=153 Identities=16% Similarity=0.192 Sum_probs=95.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.++.++|+++|++|+|||||+++|+. +... ....|+......++..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~ 71 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL--GEIV--------------------------------TTIPTIGFNVETVEYK 71 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS--SCCE--------------------------------EEEEETTEEEEEEEET
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh--CCcc--------------------------------ccCCcCceeEEEEEEC
Confidence 35569999999999999999999941 1110 0112444444556778
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~ 217 (496)
+..+.|+||||+++|...+...+..+|++|+|+|++.+.. + ....+.+..+.. .++| +++|+||+|+..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~ 144 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---QESADELQKMLQEDELRDAV-LLVFANKQDMPN 144 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHhcccccCCCe-EEEEEECCCCCC
Confidence 8999999999999987777777889999999999987521 0 112222222221 2566 899999999943
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. . .+++.+.+ ...... ...++++++||++|.|++++.
T Consensus 145 ~~-~---~~~i~~~~----~~~~~~-~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 145 AM-P---VSELTDKL----GLQHLR-SRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp CC-C---HHHHHHHT----TGGGCS-SCCEEEEECBTTTTBTHHHHH
T ss_pred CC-C---HHHHHHHh----Cccccc-CCceEEEECcCCCcCCHHHHH
Confidence 21 1 12222221 111111 124689999999999999853
No 89
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.73 E-value=1.7e-17 Score=149.41 Aligned_cols=150 Identities=22% Similarity=0.260 Sum_probs=100.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+++|+...- .....+.++.+.....+..++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSF-------------------------------DNTYQATIGIDFLSKTMYLED 60 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCC-------------------------------CSSCCCCCSEEEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCceeeEEEEEEEEECC
Confidence 3458999999999999999999963211 011124455555555566655
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+..
T Consensus 61 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 133 (179)
T 2y8e_A 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS---F---HQTSKWIDDVRTERGSDVI-IMLVGNKTDLSD 133 (179)
T ss_dssp EEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHTTSSE-EEEEEECGGGGG
T ss_pred eEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCcccc
Confidence 579999999999998888888889999999999986421 1 122222222222 2566 899999999842
Q ss_pred CC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 218 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 218 ~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.. ...+ +...+.+.. .++++++||++|.|++++
T Consensus 134 ~~~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 134 KRQVSTE-------EGERKAKEL------NVMFIETSAKAGYNVKQL 167 (179)
T ss_dssp GCCSCHH-------HHHHHHHHH------TCEEEEEBTTTTBSHHHH
T ss_pred cCcCCHH-------HHHHHHHHc------CCeEEEEeCCCCCCHHHH
Confidence 21 1111 122233333 357999999999999985
No 90
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.73 E-value=2.8e-17 Score=152.23 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=99.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+++|+. +.+.. ....++.+.....+..++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~ 75 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT--NAFPG------------------------------EYIPTVFDNYSANVMVDG 75 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH--SCCCC-------------------------------CCCCSEEEEEEEEECC-
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh--CCCCC------------------------------CcCCeecceeEEEEEECC
Confidence 4569999999999999999999962 11111 012333333334444444
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~~--~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|.......+..+|++|+|+|++.+... .... ..+..+... ++| +++|+||+|+..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 148 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF------ENVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 148 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH------HHHHHTHHHHHHHHCSSCC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHH------HHHHHHHHHHHHHhCCCCC-EEEEEechhhcc
Confidence 4566999999999988888888999999999999875320 0111 222333333 677 899999999843
Q ss_pred CCccHHHHHHH---------HHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 218 VNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 218 ~~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.. ...+.+ ..+...+.+..++ .+++++||++|.|++++
T Consensus 149 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l 195 (204)
T 4gzl_A 149 DK---DTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTV 195 (204)
T ss_dssp CH---HHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHH
T ss_pred ch---hhhhhhhccccccccHHHHHHHHHhcCC-----cEEEEeeCCCCCCHHHH
Confidence 21 111111 1233344555543 36999999999999985
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.73 E-value=3.6e-17 Score=149.72 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=99.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+..+|+++|++|+|||||+++|.... .. ....|+......+..++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDR--LA--------------------------------TLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSC--CC--------------------------------CCCCCCSCEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--CC--------------------------------ccccCCCCCeEEEEECC
Confidence 455799999999999999999995311 10 01233333445677788
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~ 218 (496)
..+.++||||+++|...+...++.+|++++|+|++.+.. + ......+..+.. .+.| +++|.||+|+...
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 139 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER---F---DEARVELDALFNIAELKDVP-FVILGNKIDAPNA 139 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHH---H---HHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC
Confidence 999999999999988777777889999999999987631 0 012222222221 3566 8999999999542
Q ss_pred CccHHHHHHHHHHHHHHHHhcC------CCccCCeeEEeeccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASG------YNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~------~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.+.+. +.+.++... +.....++++++||++|.|++++
T Consensus 140 -~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 182 (190)
T 1m2o_B 140 -VSEAE-------LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEA 182 (190)
T ss_dssp -CCHHH-------HHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHH
T ss_pred -CCHHH-------HHHHhCCccccccccccccceEEEEEeECCcCCCHHHH
Confidence 22222 222222211 01013568999999999999985
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.73 E-value=1.8e-17 Score=150.32 Aligned_cols=154 Identities=21% Similarity=0.239 Sum_probs=99.1
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 60 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 60 ~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
....+.++|+++|++|+|||||+++|+... .. ....|+......+.
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~ 61 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNE--VV--------------------------------HTSPTIGSNVEEIV 61 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTS--CE--------------------------------EEECCSSSSCEEEE
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCC--CC--------------------------------ccCCcCceeeEEEE
Confidence 345567999999999999999999996321 00 01122223334566
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccC
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 215 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~ 215 (496)
.++..+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|+
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 134 (181)
T 2h17_A 62 INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLIFANKQDV 134 (181)
T ss_dssp ETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred ECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhCCCe-EEEEEECCCc
Confidence 678999999999999998888888899999999999987621 1 122222332222 3556 8999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
... ...+ ++.+ .+....+. ...++++++||++|.|++++
T Consensus 135 ~~~-~~~~---~i~~----~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 135 KEC-MTVA---EISQ----FLKLTSIK-DHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp TTC-CCHH---HHHH----HTTGGGCC-SSCEEEEECBTTTTBTHHHH
T ss_pred ccC-CCHH---HHHH----HhCccccc-CCceEEEEccCCCCcCHHHH
Confidence 432 1222 2222 22111111 12468999999999999885
No 93
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.8e-17 Score=152.04 Aligned_cols=152 Identities=20% Similarity=0.153 Sum_probs=101.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|.+|+|||||+++|+... .. ....+.++.+.....+..++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 72 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGL--FP-----------------------------PGQGATIGVDFMIKTVEING 72 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSS--CC-----------------------------TTCCCCCSEEEEEEEEEETT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCC--CC-----------------------------CCCCCccceeEEEEEEEECC
Confidence 456899999999999999999996321 11 11113344455555566655
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.... +. .....+..+... ++| +++|+||+|+..
T Consensus 73 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~ 145 (201)
T 2ew1_A 73 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYASNKVI-TVLVGNKIDLAE 145 (201)
T ss_dssp EEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 578999999999998888888999999999999987531 10 122333333332 455 889999999842
Q ss_pred C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ....+. ...+.+.. .++++++||++|.|++++..
T Consensus 146 ~~~v~~~~-------~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 146 RREVSQQR-------AEEFSEAQ------DMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp GCSSCHHH-------HHHHHHHH------TCCEEECCTTTCTTHHHHHH
T ss_pred ccccCHHH-------HHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 112222 22233333 24699999999999998644
No 94
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.4e-17 Score=152.26 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=100.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+++|+...- .. ......|.+.......+....
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 63 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTF--DP---------------------------ELAATIGVDFKVKTISVDGNK 63 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCC--CT---------------------------TCCCCCSEEEEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCC--Cc---------------------------cCCCccceEEEEEEEEECCeE
Confidence 4568999999999999999999963211 00 001112344433333343345
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.+... ......+..+.. .++| +++|+||+|+...
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF------VKLDNWLNELETYCTRNDIV-NMLVGNKIDKENR 136 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHH------HTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSC
T ss_pred EEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHH------HHHHHHHHHHHHhcCcCCCc-EEEEEECCcCccc
Confidence 7899999999999988888888999999999999875320 012222223322 1355 8899999999433
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
....+ +...+.+.. .++++++||++|.|++++.+
T Consensus 137 ~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 137 EVDRN-------EGLKFARKH------SMLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp CSCHH-------HHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred ccCHH-------HHHHHHHHc------CCEEEEecCCCCCCHHHHHH
Confidence 32222 222333433 35799999999999998644
No 95
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.73 E-value=1.1e-17 Score=153.14 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=99.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeE-----
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA----- 136 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~----- 136 (496)
....++|+++|++|+|||||++.|... ..... .............|+.....
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~---~~~~~--------------------~~~~~~~~~~~~~t~~~~~~~~~~~ 67 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSK---VPEGR--------------------KGEMVSLATEDERTLFFDFLPLDIG 67 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHT---SCGGG--------------------BCCCEEEECSSCEEEEEEECCSSCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhh---ccccc--------------------cccccccccccccceeeeecccccc
Confidence 345799999999999999999766321 11000 00000000001123322221
Q ss_pred EEEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHH----HHH-----cCCceEE
Q 010985 137 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKT-----LGVTKLL 207 (496)
Q Consensus 137 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~----~~~-----~~~~~~i 207 (496)
.+......+.|+||||+++|.......++.+|++|+|+|++.+.. .+..+.+.. +.. .++| ++
T Consensus 68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~-------~~~~~s~~~l~~~l~~~~~~~~~~p-ii 139 (198)
T 3t1o_A 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRL-------RANAESMRNMRENLAEYGLTLDDVP-IV 139 (198)
T ss_dssp CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGH-------HHHHHHHHHHHHHHHHTTCCTTSSC-EE
T ss_pred cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchh-------hHhHHHHHHHHHHHHhhccccCCCC-EE
Confidence 222235679999999999998888888999999999999986532 122222222 222 3567 89
Q ss_pred EEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 208 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 208 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+|+||+|+... ... +++..+++..++ .+++++||++|.|++++.+
T Consensus 140 lv~NK~Dl~~~-~~~-------~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 140 IQVNKRDLPDA-LPV-------EMVRAVVDPEGK-----FPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp EEEECTTSTTC-CCH-------HHHHHHHCTTCC-----SCEEECBGGGTBTHHHHHH
T ss_pred EEEEchhcccc-cCH-------HHHHHHHHhcCC-----ceEEEEecCCCcCHHHHHH
Confidence 99999999432 222 233444444432 1799999999999998644
No 96
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.73 E-value=4.4e-17 Score=144.32 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=95.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|++|+|||||+++|+... .... ...++.+.....+...+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 50 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDE------------------------------CDPTIEDSYRKQVVIDGET 50 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSC------------------------------CCTTCCEEEEEEEEETTEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCc--Cccc------------------------------cCCccceEEEEEEEECCEE
Confidence 4799999999999999999996321 1100 01111122222333333
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~----~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||+.+|.......+..+|++++|+|++.... + ....+.+..+... ++| +++|+||+|+...
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---F---EDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAAR 123 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCC
T ss_pred EEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhc
Confidence 568899999999988877778889999999999986421 0 0112222222222 567 8999999998543
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
....+. +..+.+..+ ++++++||++|.|+.++.
T Consensus 124 ~~~~~~-------~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 124 TVESRQ-------AQDLARSYG------IPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp CSCHHH-------HHHHHHHHT------CCEEEECTTTCTTHHHHH
T ss_pred ccCHHH-------HHHHHHHcC------CeEEEecCCCCCCHHHHH
Confidence 222222 223333333 469999999999999854
No 97
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=151.54 Aligned_cols=155 Identities=18% Similarity=0.144 Sum_probs=101.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+++|+...-... .....|.+.......+...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 72 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-----------------------------SRTTIGVEFSTRTVMLGTA 72 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCSSEEEEEEEEEETTE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEEEEEEEECCE
Confidence 34569999999999999999999963221100 0011233333333333334
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~~ 218 (496)
...+.|+||||+.+|...+...+..+|++|+|+|++..... ......+..+... ++| +++|+||+|+...
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~------~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~ 145 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTY------AVVERWLKELYDHAEATIV-VMLVGNKSDLSQA 145 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHH------HTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCe-EEEEEECCCcccc
Confidence 57899999999999988888888999999999999875320 1122333333322 456 8999999998432
Q ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ... .+...+.+.. .++++++||++|.|++++..
T Consensus 146 ~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 146 REVPT-------EEARMFAENN------GLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp CCSCH-------HHHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred cccCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 111 1223333433 35799999999999998643
No 98
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.73 E-value=4.4e-17 Score=150.36 Aligned_cols=154 Identities=19% Similarity=0.154 Sum_probs=100.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+... ... ......|++.......+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDS--FTP---------------------------AFVSTVGIDFKVKTIYRNDKR 56 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCC--CCS---------------------------CCCCCCSEEEEEEEEEETTEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CCC---------------------------CcCCccceeEEEEEEEECCeE
Confidence 346899999999999999999996321 100 000112344433333333335
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC-
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV- 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~- 218 (496)
..+.|+||||+.+|...+...+..+|++|+|+|++.+.. + ......+..+.. .+.| +++|+||+|+...
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDER 129 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSC
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccCccc
Confidence 689999999999998888888999999999999987521 0 012223333333 2556 8999999999432
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
....+ ++..+.+..+ ++++++||++|.|+.++.+
T Consensus 130 ~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 130 VVSSE-------RGRQLADHLG------FEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp CSCHH-------HHHHHHHHHT------CEEEECBTTTTBSSHHHHH
T ss_pred ccCHH-------HHHHHHHHCC------CeEEEEECCCCCCHHHHHH
Confidence 11222 2223333333 4799999999999998654
No 99
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.72 E-value=1.6e-17 Score=148.31 Aligned_cols=151 Identities=14% Similarity=0.141 Sum_probs=92.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+... .. ....+.++.+.....+..++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 52 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENK--FN-----------------------------DKHITTLGASFLTKKLNIGG 52 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCC--CC-----------------------------SSCCCCCSCEEEEEEEESSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC--CC-----------------------------cCCCCccceEEEEEEEEECC
Confidence 356899999999999999999996321 10 01112233333333444444
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+.+|.......+..+|++++|+|++.+.. + ......+..+.. .++| +++|+||+|+..
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 125 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS---F---QKVKNWVKELRKMLGNEIC-LCIVGNKIDLEK 125 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHGGGSE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECccccc
Confidence 578899999999998877778889999999999987531 0 011222222222 3566 899999999843
Q ss_pred C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. ..+. ++...+.+..+ .+++++||++|.|++++.
T Consensus 126 ~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1z08_A 126 ERHVSI-------QEAESYAESVG------AKHYHTSAKQNKGIEELF 160 (170)
T ss_dssp GCCSCH-------HHHHHHHHHTT------CEEEEEBTTTTBSHHHHH
T ss_pred ccccCH-------HHHHHHHHHcC------CeEEEecCCCCCCHHHHH
Confidence 2 1121 22333444433 578999999999999864
No 100
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.72 E-value=2.8e-17 Score=149.03 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=97.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+++|+.. ..... ...++.+.....+..++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~ 50 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTN--AFPGE------------------------------YIPTVFDNYSANVMVDG 50 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS--SCCSS------------------------------CCCCSCCEEEEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcC--CCCCC------------------------------cCCcccceeEEEEEECC
Confidence 35689999999999999999999632 11100 01111111122233344
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~~--~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|.......+..+|++|+|+|++.+... .... ..+..+... ++| +++|+||+|+..
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 123 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF------ENVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 123 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH------HHHHHTHHHHHHHHSTTSC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhH------HHHHHHHHHHHHHhCCCCC-EEEEeEcccccc
Confidence 5677999999999987777788899999999999875310 0111 122333333 677 899999999843
Q ss_pred CCccHHHHHHH---------HHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. ....+.+ ..+...+.+..++ .+++++||++|.|++++.
T Consensus 124 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 124 D---KDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVF 171 (186)
T ss_dssp C---HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred c---chhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEecCCCccCHHHHH
Confidence 2 1111111 1223334444432 379999999999999853
No 101
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.72 E-value=7.4e-18 Score=162.28 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=103.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+|+|++........ ...++|++.....+.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~ 69 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL-----------------------------GSQTLTKTCSKSQGSWG 69 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT-----------------------------TSCCCCCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC-----------------------------CCCceeeeeEEEEEEeC
Confidence 3456899999999999999999997443222111 01237777777778889
Q ss_pred CeEEEEEeCCCCccc-----------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-----CCce
Q 010985 142 TTRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTK 205 (496)
Q Consensus 142 ~~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-----~~~~ 205 (496)
+..++|+||||+.++ .+.+...+..+|++|+|+|+.. + ..+....+..+... +.|
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~------~~~~~~~~~~l~~~~~~~~~~~- 140 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--Y------TSQDQQAAQRVKEIFGEDAMGH- 140 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--C------CHHHHHHHHHHHHHHCGGGGGG-
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--C------CHHHHHHHHHHHHHhCchhhcc-
Confidence 999999999998765 2223335678999999999985 2 13445555555554 556
Q ss_pred EEEEEe-eccCCCCCccHHHHHHHH----HHHHHHHHhcCCCccCCeeE--Eeeccccccccccccc
Q 010985 206 LLLVVN-KMDDHTVNWSKERYDEIE----SKMTPFLKASGYNVKKDVQF--LPISGLMGLNMKTRVD 265 (496)
Q Consensus 206 ~ivviN-K~D~~~~~~~~~~~~~i~----~~l~~~l~~~~~~~~~~~~~--ipiSa~~g~gi~~l~~ 265 (496)
.|+++| |+|+.... ... .+. .++..+++.++.. -.++ +++||++|.|+.++..
T Consensus 141 ~i~vv~nK~Dl~~~~--~~~--~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~~gv~~l~~ 200 (260)
T 2xtp_A 141 TIVLFTHKEDLNGGS--LMD--YMHDSDNKALSKLVAACGGR---ICAFNNRAEGSNQDDQVKELMD 200 (260)
T ss_dssp EEEEEECGGGGTTCC--HHH--HHHHCCCHHHHHHHHHTTTC---EEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEcccccCCcc--HHH--HHHhcchHHHHHHHHHhCCe---EEEecCcccccccHHHHHHHHH
Confidence 566777 99995322 111 111 2233444544321 0012 8899999999998643
No 102
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.72 E-value=2.8e-17 Score=146.31 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=97.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
..++|+++|++|+|||||+++|+.. ... ....+.++.+.....+..++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 52 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG--IFT-----------------------------KDYKKTIGVDFLERQIQVNDE 52 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC--CCC-----------------------------CCSSCCCSSSEEEEEEEETTE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC--CCC-----------------------------CCCCCceEEEEEEEEEEECCE
Confidence 4689999999999999999999632 110 00012222333334444443
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCC-
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV- 218 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~--~~~~~~ivviNK~D~~~~- 218 (496)
..+.|+||||+.+|...+...+..+|++++|+|++.... + ......+..+.. .+.| +++|+||+|+...
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES---F---EAISSWREKVVAEVGDIP-TALVQNKIDLLDDS 125 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGC
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECcccCccc
Confidence 578999999999887777777889999999999987531 0 112222222222 3667 8999999998431
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
....+ ++..+.+..+ ++++++||++|.|++++.
T Consensus 126 ~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~ 158 (168)
T 1z2a_A 126 CIKNE-------EAEGLAKRLK------LRFYRTSVKEDLNVSEVF 158 (168)
T ss_dssp SSCHH-------HHHHHHHHHT------CEEEECBTTTTBSSHHHH
T ss_pred ccCHH-------HHHHHHHHcC------CeEEEEecCCCCCHHHHH
Confidence 11122 2233344443 479999999999999854
No 103
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.72 E-value=2.5e-17 Score=162.54 Aligned_cols=162 Identities=13% Similarity=0.186 Sum_probs=107.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe-CC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~ 142 (496)
..++|+++|.+|+|||||+++|+...... .....|.|++.....+.. ++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~------------------------------~~~~~~~Ti~~~~~~~~~~~~ 51 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAF------------------------------DTRRLGATIDVEHSHLRFLGN 51 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTG------------------------------GGGGCCCCCSEEEEEEEETTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc------------------------------cccCcCCccceEEEEEEeCCc
Confidence 35899999999999999999986321111 112378888888777775 57
Q ss_pred eEEEEEeCCCCcccHh-----HHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccC
Q 010985 143 TRFTILDAPGHKSYVP-----NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDD 215 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~-----~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~ 215 (496)
..+.|+||||+++|.. .....+..+|++|+|+|++........ ....+.+..+... ++| +++|+||+|+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l---~~~~~~l~~l~~~~~~~p-iilv~NK~Dl 127 (307)
T 3r7w_A 52 MTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDI---EIFAKALKQLRKYSPDAK-IFVLLHKMDL 127 (307)
T ss_dssp EEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHH---HHHHHHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred eEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHH---HHHHHHHHHHHHhCCCCe-EEEEEecccc
Confidence 8999999999998843 334445789999999999876320000 0001112222211 667 8999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
...+...+.++....++..+.+.+|+. .++++++||++ .|+.+.
T Consensus 128 ~~~~~r~~~~~v~~~~~~~~~~~~g~~---~~~~~~tSa~~-~~i~e~ 171 (307)
T 3r7w_A 128 VQLDKREELFQIMMKNLSETSSEFGFP---NLIGFPTSIWD-ESLYKA 171 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTCC---SCEEEECCTTS-SHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHcCCC---CeEEEEeeecC-ChHHHH
Confidence 432111222224456677777777753 46899999999 666654
No 104
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.72 E-value=5.3e-17 Score=149.24 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=97.9
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEE
Q 010985 59 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 138 (496)
Q Consensus 59 ~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~ 138 (496)
....++.++|+++|.+|+|||||+++|... ... ....|.+.......+
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~---~~~-----------------------------~~~~~~~~~~~~~~~ 61 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK---MSP-----------------------------NETLFLESTNKIYKD 61 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSC---CCG-----------------------------GGGGGCCCCCSCEEE
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhc---CCC-----------------------------cceeeeccccceeee
Confidence 345566799999999999999999987421 110 011222222222222
Q ss_pred E---eCCeEEEEEeCCCCcccHhHH---hhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-----cCCceEE
Q 010985 139 E---TETTRFTILDAPGHKSYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLL 207 (496)
Q Consensus 139 ~---~~~~~i~liDtpG~~~~~~~~---~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-----~~~~~~i 207 (496)
. .....+.|+||||+++|.... ...++.+|++|+|+|++....+ ........+.. .++| ++
T Consensus 62 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~l~~~~~~~~~~p-ii 133 (196)
T 3llu_A 62 DISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYME-------ALTRLHITVSKAYKVNPDMN-FE 133 (196)
T ss_dssp EECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHH-------HHHHHHHHHHHHHHHCTTCE-EE
T ss_pred eccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHH-------HHHHHHHHHHHHHhcCCCCc-EE
Confidence 2 244789999999999987776 5777899999999999986211 11222222222 2566 89
Q ss_pred EEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 208 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 208 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+|.||+|+...+...+....+..+....+...... ...++++++||++ .|+.++
T Consensus 134 lv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~e~Sa~~-~~v~~~ 187 (196)
T 3llu_A 134 VFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE-KLHLSFYLTSIYD-HSIFEA 187 (196)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT-TSCEEEEEECTTS-THHHHH
T ss_pred EEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh-cCCcceEEEEech-hhHHHH
Confidence 99999998432111122333433333334332221 1247899999999 999985
No 105
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.72 E-value=1.3e-17 Score=152.15 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=99.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++.++|+++|++|+|||||+++|+. +.... ...|+......+..++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~ 65 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL--GDVVT--------------------------------TVPTVGVNLETLQYKN 65 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC--SCCEE--------------------------------ECSSTTCCEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc--CCCCC--------------------------------cCCCCceEEEEEEECC
Confidence 4579999999999999999999841 11100 0112223334566678
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.+.. + ....+.+..+.. .+.| +++|+||+|+...
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 138 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDR---M---GVAKHELYALLDEDELRKSL-LLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTT---H---HHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCC
Confidence 999999999999987777777889999999999987621 0 012222222222 2566 8999999999432
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. . .+++.+.+. ...+. ...++++++||++|.|++++.+
T Consensus 139 ~-~---~~~~~~~~~----~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 176 (189)
T 2x77_A 139 A-S---EAEIAEQLG----VSSIM-NRTWTIVKSSSKTGDGLVEGMD 176 (189)
T ss_dssp C-C---HHHHHHHTT----GGGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred C-C---HHHHHHHhC----hhhcc-CCceEEEEccCCCccCHHHHHH
Confidence 1 1 122222211 11111 1246899999999999998643
No 106
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.72 E-value=6.6e-17 Score=147.47 Aligned_cols=152 Identities=17% Similarity=0.126 Sum_probs=89.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+.++|+++|.+|+|||||+++|+... ... ...+++.+.....+..+
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~ 65 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNH--FVD------------------------------EYDPTIEDSYRKQVVID 65 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSS--CCS------------------------------CCCTTCCEEEEEEEEET
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCC--Ccc------------------------------ccCCccceEEEEEEEEC
Confidence 3456899999999999999999996321 110 00122222222334444
Q ss_pred C--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccC
Q 010985 142 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~ 215 (496)
+ ..+.|+||||+.+|.......+..+|++++|+|++..... ......+..+.. .++| +++|+||+|+
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl 138 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSF------ADINLYREQIKRVKDSDDVP-MVLVGNKCDL 138 (190)
T ss_dssp TEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHHTCSCCC-EEEEEECTTC
T ss_pred CEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHH------HHHHHHHHHHHHHhCCCCCe-EEEEEECCcC
Confidence 4 5689999999999988888888999999999999875210 011222222222 2567 8999999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.......+. +..+.+..+ ++++++||++|.|+.++.+
T Consensus 139 ~~~~~~~~~-------~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 139 PTRTVDTKQ-------AHELAKSYG------IPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp SCCCSCHHH-------HHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred CcccCCHHH-------HHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 542222222 233334433 4699999999999998643
No 107
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.72 E-value=3.4e-17 Score=149.73 Aligned_cols=154 Identities=20% Similarity=0.191 Sum_probs=99.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
.....++|+++|++|+|||||+++|+...-. . ...+.++.+.....+..
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~-----------------------------~~~~t~~~~~~~~~~~~ 65 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--P-----------------------------VHDLTIGVEFGARMVNI 65 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCC--C----------------------------------CCSSEEEEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCC--C-----------------------------CCCCcccceeEEEEEEE
Confidence 3456799999999999999999999632111 0 00111222333334444
Q ss_pred CC--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccC
Q 010985 141 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~ 215 (496)
++ ..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+... ++| +++|+||+|+
T Consensus 66 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl 138 (191)
T 2a5j_A 66 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLTSWLEDARQHSSSNMV-IMLIGNKSDL 138 (191)
T ss_dssp TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred CCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 44 588999999999987777778889999999999987532 1 1222333333332 566 8999999998
Q ss_pred CCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... ....+ +...+.+..+ ++++++||++|.|++++..
T Consensus 139 ~~~~~v~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 139 ESRRDVKRE-------EGEAFAREHG------LIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp GGGCCSCHH-------HHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred CCccccCHH-------HHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 421 11222 2223333333 4799999999999998643
No 108
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.72 E-value=2.6e-17 Score=148.80 Aligned_cols=151 Identities=17% Similarity=0.103 Sum_probs=95.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+++|+... .... .....+.+. ...+..++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~---------------------------~~~t~~~~~---~~~~~~~~ 51 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQ--FVDS---------------------------YDPTIENTF---TKLITVNG 51 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSS--CCSC---------------------------CCTTCCEEE---EEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCC--CCCC---------------------------CCCCccccE---EEEEEECC
Confidence 356899999999999999999996221 1100 000122222 33344455
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHH---HcCCceEEEEEeeccCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAK---TLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~---~~~~~~~ivviNK~D~~ 216 (496)
..+.|+||||+++|.......+..+|++++|+|++..... + .....+ .+.. ..++| +++|+||+|+.
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 124 (181)
T 3t5g_A 52 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF---E---VIKVIHGKLLDMVGKVQIP-IMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHH---H---HHHHHHHHHHHHC----CC-EEEEEECTTCT
T ss_pred EEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHH---H---HHHHHHHHHHHhcCCCCCC-EEEEEECccch
Confidence 6679999999999976666778899999999999874210 0 111111 1112 23567 89999999984
Q ss_pred CCC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 217 TVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 217 ~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... ... ++...+.+..+ .+++++||++|.|++++..
T Consensus 125 ~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 125 MERVISY-------EEGKALAESWN------AAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp TTCCSCH-------HHHHHHHHHTT------CEEEECCTTSHHHHHHHHH
T ss_pred hcceecH-------HHHHHHHHHhC------CcEEEEecCCCCCHHHHHH
Confidence 221 122 22333444443 4799999999999998644
No 109
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.72 E-value=2.7e-17 Score=148.30 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=97.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+.++|+++|++|+|||||+++|+... .... ...++.+.....+..+
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~ 53 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSY--FVSD------------------------------YDPTIEDSYTKICSVD 53 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSS--CCSS------------------------------CCTTCCEEEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCc--Cccc------------------------------cCCCcCceEEEEEEEC
Confidence 3457899999999999999999996321 1100 0122222222344455
Q ss_pred C--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH-HH---cCCceEEEEEeeccC
Q 010985 142 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~-~~---~~~~~~ivviNK~D~ 215 (496)
+ ..+.|+||||+.+|.......+..+|++++|+|++.... + ......+..+ .. .++| +++|+||+|+
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 126 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQS---F---NEVGKLFTQILRVKDRDDFP-VVLVGNKADL 126 (181)
T ss_dssp TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTSSCCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4 578899999999987777777889999999999987521 0 0111222222 22 3567 8999999998
Q ss_pred CCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... ....+. ...+.... .++++++||++|.|++++.+
T Consensus 127 ~~~~~v~~~~-------~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 127 ESQRQVPRSE-------ASAFGASH------HVAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp GGGCCSCHHH-------HHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred ccccccCHHH-------HHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 432 112211 22223333 35799999999999998644
No 110
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.72 E-value=2.8e-17 Score=146.28 Aligned_cols=150 Identities=18% Similarity=0.122 Sum_probs=81.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
.++|+++|++|+|||||+++|+...-. ......|.|.+. ...+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~~~~~-~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG------------------------------PEAEAAGHTYDR-SIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEEE-EEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc------------------------------CCCCccccceEE-EEEECCEEEE
Confidence 479999999999999999998421100 011124455432 2223333467
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC-
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN- 219 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~~- 219 (496)
+.++||||+..|.......+..+|++++|+|.+.... + ......+..+.. .++| +++|+||+|+....
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~ 123 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGS---F---EKASELRVQLRRARQTDDVP-IILVGNKSDLVRSRE 123 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHHH---H---HHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCC
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccc
Confidence 8899999999987777777889999999999986521 1 012222233332 2567 89999999985321
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
...+. ...+.... ..+++++||++|.|++++.+
T Consensus 124 ~~~~~-------~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 124 VSVDE-------GRACAVVF------DCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp SCHHH-------HHHHHHHT------TCEEEECBGGGTBSHHHHHH
T ss_pred cCHHH-------HHHHHHHh------CCcEEEeccCCCCCHHHHHH
Confidence 12211 12223333 35799999999999998643
No 111
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.72 E-value=9.6e-17 Score=148.15 Aligned_cols=153 Identities=19% Similarity=0.141 Sum_probs=99.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
...+.++|+++|++|+|||||+++|+... +... ..+++.+.....+..
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~ 57 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDE--FVED------------------------------YEPTKADSYRKKVVL 57 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSC--CCTT------------------------------CCTTCCEEEEEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCC--CCCC------------------------------CCCccceEEEEEEEE
Confidence 44567999999999999999999996321 1100 012222222233444
Q ss_pred CC--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeecc
Q 010985 141 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 214 (496)
Q Consensus 141 ~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D 214 (496)
++ ..+.|+||||+.+|.......+..+|++++|+|++.... + ......+..+.. .++| +++|+||+|
T Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~D 130 (206)
T 2bov_A 58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---F---AATADFREQILRVKEDENVP-FLLVGNKSD 130 (206)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHTTCSCCC-EEEEEECTT
T ss_pred CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEeccC
Confidence 44 578999999999998888888889999999999987421 0 011222222222 2567 899999999
Q ss_pred CCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 215 DHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 215 ~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+... .... +++..+.+..+ ++++++||++|.|++++..
T Consensus 131 l~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 131 LEDKRQVSV-------EEAKNRAEQWN------VNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp CGGGCCSCH-------HHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred ccccccccH-------HHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 8432 1111 22333344433 4799999999999998654
No 112
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.72 E-value=5.1e-17 Score=144.33 Aligned_cols=149 Identities=19% Similarity=0.147 Sum_probs=93.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
+.++|+++|++|+|||||+++|+... .... ...++.+.....+..++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~~ 50 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDE--FVED------------------------------YEPTKADSYRKKVVLDGE 50 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCSC------------------------------CCTTCCEEEEEEEEETTE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc--cCCC------------------------------CCCCcceEEEEEEEECCE
Confidence 46899999999999999999996321 1100 01122222222334444
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCC
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+.+|.......+..+|++++|+|++.... + ......+..+.. .++| +++|+||+|+..
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 123 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---F---AATADFREQILRVKEDENVP-FLLVGNKSDLED 123 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEECccccc
Confidence 578999999999998888888899999999999986521 0 011222222222 2567 899999999843
Q ss_pred CC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. ... +++..+++..+ ++++++||++|.|++++.
T Consensus 124 ~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 158 (168)
T 1u8z_A 124 KRQVSV-------EEAKNRADQWN------VNYVETSAKTRANVDKVF 158 (168)
T ss_dssp GCCSCH-------HHHHHHHHHHT------CEEEECCTTTCTTHHHHH
T ss_pred cCccCH-------HHHHHHHHHcC------CeEEEeCCCCCCCHHHHH
Confidence 21 111 22233334333 479999999999999864
No 113
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.8e-17 Score=151.68 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=103.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+++|+...-.. ......|++.......+...
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 70 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTP-----------------------------AFVSTVGIDFKVKTVYRHEK 70 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCC-----------------------------CEEEEETTTEEEEEEEETTT
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCc-----------------------------ccCCCeeeEEEEEEEEECCE
Confidence 3457899999999999999999996322100 00011234444444445556
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~ 218 (496)
...+.|+||||++.|.......+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+...
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 143 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEE 143 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCccc
Confidence 7889999999999998888888999999999999986422 1 122333333433 2566 8999999998422
Q ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ...+ +...+.+..+ ++++++||++|.|+.++.+
T Consensus 144 ~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 144 RVVPTE-------KGQLLAEQLG------FDFFEASAKENISVRQAFE 178 (191)
T ss_dssp CCSCHH-------HHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred cccCHH-------HHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 1 1221 2223333333 4799999999999998644
No 114
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.71 E-value=2.4e-17 Score=152.53 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=101.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+...- . ....+.++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~ 54 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTY--T-----------------------------NDYISTIGVDFKIKTVELDG 54 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCC--C-----------------------------TTCCCSSCCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCcccceeEEEEEEECC
Confidence 3468999999999999999999963211 0 11123344444444555555
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.+... ......+..+... ++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~------~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF------NGVKMWLQEIDRYATSTVL-KLLVGNKCDLKD 127 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 5799999999999988788888999999999999875310 0112222333332 356 899999999943
Q ss_pred C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ....+ +...+.+..+ ++++++||++|.|++++..
T Consensus 128 ~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 128 KRVVEYD-------VAKEFADANK------MPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp TCCSCHH-------HHHHHHHHTT------CCEEECCTTTCTTHHHHHH
T ss_pred ccccCHH-------HHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 2 11221 2222333333 4799999999999998654
No 115
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=153.27 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=97.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+...-. ....+.++.+.....+..++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 71 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK-------------------------------QDSNHTIGVEFGSRVVNVGG 71 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------------------------------------CCEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-------------------------------ccCCCcccceeEEEEEEECC
Confidence 45699999999999999999999632110 01112333344444455555
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+.+|...+...+..+|++|+|+|++.+.. + ......+..+.. .++| +++|+||+|+..
T Consensus 72 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 144 (200)
T 2o52_A 72 KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---Y---NSLAAWLTDARTLASPNIV-VILCGNKKDLDP 144 (200)
T ss_dssp EEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTCTTCE-EEEEEECGGGGG
T ss_pred eeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCCccc
Confidence 689999999998887777777889999999999987532 1 012222222322 2566 899999999842
Q ss_pred C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. .... .+...+.+.. .++++++||++|.|++++..
T Consensus 145 ~~~v~~-------~~~~~~~~~~------~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 145 EREVTF-------LEASRFAQEN------ELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp GCCSCH-------HHHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred ccccCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 1111 1222333333 35799999999999998654
No 116
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=2.8e-17 Score=148.82 Aligned_cols=153 Identities=17% Similarity=0.251 Sum_probs=96.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
++.++|+++|++|+|||||+++|+. +.. .....|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~--~~~--------------------------------~~~~~t~~~~~~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI--GEV--------------------------------VTTKPTIGFNVETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC--SEE--------------------------------EEECSSTTCCEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCc--------------------------------CccCCcCccceEEEEECC
Confidence 5679999999999999999999841 100 001122223334566678
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~ 218 (496)
..+.++||||+.+|...+...+..+|++++|+|++.+.. + ....+.+..+.. .+.| +++|+||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR---M---STASKELHLMLQEEELQDAA-LLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT---H---HHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCC
Confidence 999999999999988878888899999999999987521 0 112222222221 3456 8999999999432
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... ++ +...+...... ...++++++||++|.|++++.+
T Consensus 135 -~~~---~~----i~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (183)
T 1moz_A 135 -LSA---SE----VSKELNLVELK-DRSWSIVASSAIKGEGITEGLD 172 (183)
T ss_dssp -CCH---HH----HHHHTTTTTCC-SSCEEEEEEBGGGTBTHHHHHH
T ss_pred -CCH---HH----HHHHhCccccc-CCceEEEEccCCCCcCHHHHHH
Confidence 111 12 22222221111 1346899999999999998643
No 117
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.71 E-value=2.9e-17 Score=146.06 Aligned_cols=150 Identities=19% Similarity=0.170 Sum_probs=95.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe--C
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--E 141 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~--~ 141 (496)
+.++|+++|++|+|||||+++|+. +..... . ..++.+.....+.. .
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~--~~~~~~-----------------------------~-~~t~~~~~~~~~~~~~~ 49 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQ--GIFVEK-----------------------------Y-DPTIEDSYRKQVEVDCQ 49 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH--CCCCCS-----------------------------C-CCCSEEEEEEEEESSSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCCCCC-----------------------------C-CCCccceEEEEEEECCE
Confidence 358999999999999999999963 111100 0 11111111122233 3
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~ 217 (496)
...+.|+||||+.+|.......+..+|++++|+|++.... ++ .....+..+.. .++| +++|+||+|+..
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 122 (167)
T 1c1y_A 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLED 122 (167)
T ss_dssp EEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSCCC-EEEEEECTTCGG
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCcCCCc-EEEEEECccccc
Confidence 4678999999999998888788889999999999987421 10 11222222222 2667 899999999843
Q ss_pred CC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. ... +++..+.+..+ ..+++++||++|.|++++.
T Consensus 123 ~~~~~~-------~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~ 158 (167)
T 1c1y_A 123 ERVVGK-------EQGQNLARQWC-----NCAFLESSAKSKINVNEIF 158 (167)
T ss_dssp GCCSCH-------HHHHHHHHHTT-----SCEEEECBTTTTBSHHHHH
T ss_pred cccCCH-------HHHHHHHHHcc-----CCcEEEecCCCCCCHHHHH
Confidence 21 111 22223333331 3579999999999999864
No 118
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.1e-16 Score=142.87 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=94.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
+.++|+++|++|+|||||+++|+... ..... ....+.+.. ....+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~---------------------------~~t~~~~~~-~~~~~~~~~~ 51 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGT--FRESY---------------------------IPTVEDTYR-QVISCDKSIC 51 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCC--CCSSC---------------------------CCCSCEEEE-EEEEETTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC--CCCCC---------------------------CCCccccEE-EEEEECCEEE
Confidence 35899999999999999999996311 10000 000111111 1111222335
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEeeccCCCC
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-----~~~~~~ivviNK~D~~~~ 218 (496)
.+.|+||||+.+|.......+..+|++++|+|++..... ......+..+.. .++| +++|+||+|+...
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~ 124 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSL------EELKPIYEQICEIKGDVESIP-IMLVGNKCDESPS 124 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHH------HTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHH------HHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccc
Confidence 789999999999988888888899999999999865321 122333333333 2567 8999999998432
Q ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 219 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. ...+ +...+.+.. .++++++||++|.|++++
T Consensus 125 ~~v~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 125 REVQSS-------EAEALARTW------KCAFMETSAKLNHNVKEL 157 (172)
T ss_dssp CCSCHH-------HHHHHHHHH------TCEEEECBTTTTBSHHHH
T ss_pred cccCHH-------HHHHHHHHh------CCeEEEecCCCCcCHHHH
Confidence 1 1111 112223333 357999999999999985
No 119
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.71 E-value=4.6e-17 Score=150.09 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=95.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+..+|+++|++|+|||||+++|.. +.+. ....|+......+..++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD--DRLG--------------------------------QHVPTLHPTSEELTIAG 68 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC--C--------------------------------------CCCCCSCEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc--CCCC--------------------------------ccCCCCCceeEEEEECC
Confidence 3457999999999999999999842 1110 01123333345677788
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~~ 218 (496)
..+.++||||+++|...+...+..+|++++|+|++.... + ......+..+.. .++| +++|.||+|+..
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~- 140 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER---L---LESKEELDSLMTDETIANVP-ILILGNKIDRPE- 140 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTT-
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-EEEEEECCCccc-
Confidence 999999999999887777777889999999999987521 0 012222222221 3567 899999999953
Q ss_pred CccHHHHHHHHHHHHHHHHhcC---------CC--ccCCeeEEeeccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASG---------YN--VKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~---------~~--~~~~~~~ipiSa~~g~gi~~l 263 (496)
..+.+. +...+.... +. .....+++++||++|.|++++
T Consensus 141 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 189 (198)
T 1f6b_A 141 AISEER-------LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 189 (198)
T ss_dssp CCCHHH-------HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred cCCHHH-------HHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHH
Confidence 223322 222222111 10 012468999999999999985
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.71 E-value=7.2e-18 Score=163.15 Aligned_cols=145 Identities=19% Similarity=0.154 Sum_probs=97.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
.++|+++|++|+|||||+|+|....- + ....+|+|++.....+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~---------------------~----------v~~~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ---------------------R----------VGNWPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC---------------------C----------CCSSSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC---------------------c----------ccCCCCCcEEEEEEEEec-CCe
Confidence 47899999999999999999952110 0 111268888877776766 788
Q ss_pred EEEEeCCCCcccHh------HHhhcc--ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 010985 145 FTILDAPGHKSYVP------NMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 216 (496)
Q Consensus 145 i~liDtpG~~~~~~------~~~~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~ 216 (496)
+.|+||||+..|.. .....+ ..+|++++|+|++... ........+..+++| +++|+||+|+.
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---------~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 120 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE---------RNLYLTTQLIETGIP-VTIALNMIDVL 120 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---------HHHHHHHHHHHTCSC-EEEEEECHHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH---------hHHHHHHHHHhcCCC-EEEEEEChhhC
Confidence 99999999987741 111222 3699999999998631 223333445557888 89999999983
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 217 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 217 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
... .. ......+.+.+| ++++++||++|.|++++.
T Consensus 121 ~~~----~~---~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 121 DGQ----GK---KINVDKLSYHLG------VPVVATSALKQTGVDQVV 155 (272)
T ss_dssp HHT----TC---CCCHHHHHHHHT------SCEEECBTTTTBSHHHHH
T ss_pred CcC----Cc---HHHHHHHHHHcC------CCEEEEEccCCCCHHHHH
Confidence 110 00 011122222233 479999999999999853
No 121
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=150.15 Aligned_cols=156 Identities=15% Similarity=0.013 Sum_probs=95.1
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 60 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 60 ~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
....+.++|+++|.+|+|||||+++|+...- ... .....+.+. .....+.
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~---------------------------~~~t~~~~~-~~~~~~~ 68 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEF--SEG---------------------------YDPTVENTY-SKIVTLG 68 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCC--CSC---------------------------CCCCSEEEE-EEEEC--
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCC--CCC---------------------------CCCccceEE-EEEEEEC
Confidence 3456789999999999999999999963211 000 000011111 2222233
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccC
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDD 215 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~----~~~~~~~ivviNK~D~ 215 (496)
.....+.|+||||+++|.......+..+|++|+|+|++..... ......+..+. ..++| +++|+||+|+
T Consensus 69 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 141 (201)
T 3oes_A 69 KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSF------QVIESLYQKLHEGHGKTRVP-VVLVGNKADL 141 (201)
T ss_dssp --CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHH------HHHHHHHHHHHC-----CCC-EEEEEECTTC
T ss_pred CEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHH------HHHHHHHHHHHHhcCCCCCC-EEEEEECccC
Confidence 3567889999999999988788888999999999999865210 01112222222 12567 8999999998
Q ss_pred CCCC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.... ...+ +...+.+.. .++++++||++|.|++++..
T Consensus 142 ~~~~~v~~~-------~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 142 SPEREVQAV-------EGKKLAESW------GATFMESSARENQLTQGIFT 179 (201)
T ss_dssp GGGCCSCHH-------HHHHHHHHH------TCEEEECCTTCHHHHHHHHH
T ss_pred ccccccCHH-------HHHHHHHHh------CCeEEEEeCCCCCCHHHHHH
Confidence 4221 1211 122233333 34799999999999998644
No 122
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.71 E-value=2.3e-17 Score=148.88 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=89.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.+..++|+++|++|+|||||+++|+...- . ....+.++.+.....+..+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 53 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKY--S-----------------------------QQYKATIGADFLTKEVTVD 53 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCC--C-----------------------------TTC---CCCSCEEEEECCS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcC--C-----------------------------cccCCccceEEEEEEEEEc
Confidence 34579999999999999999999963211 0 0111223333444444444
Q ss_pred ---CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-------cCCceEEEEEe
Q 010985 142 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVN 211 (496)
Q Consensus 142 ---~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-------~~~~~~ivviN 211 (496)
...+.|+||||+.+|.......+..+|++|+|+|++.+... ......+..+.. .++| +++|+|
T Consensus 54 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 126 (182)
T 1ky3_A 54 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSF------ENIKSWRDEFLVHANVNSPETFP-FVILGN 126 (182)
T ss_dssp SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHH------HTHHHHHHHHHHHHCCSCTTTCC-EEEEEE
T ss_pred CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHH------HHHHHHHHHHHHHhcccCcCCCc-EEEEEE
Confidence 36899999999999988888888999999999999875321 011222222221 3567 899999
Q ss_pred eccCCCCC--ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 212 KMDDHTVN--WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 212 K~D~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+|+.... ...+ ++..+.+.. ...+++++||++|.|++++.+
T Consensus 127 K~Dl~~~~~~v~~~-------~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 170 (182)
T 1ky3_A 127 KIDAEESKKIVSEK-------SAQELAKSL-----GDIPLFLTSAKNAINVDTAFE 170 (182)
T ss_dssp CTTSCGGGCCSCHH-------HHHHHHHHT-----TSCCEEEEBTTTTBSHHHHHH
T ss_pred CCccccccccCCHH-------HHHHHHHhc-----CCCeEEEEecCCCCCHHHHHH
Confidence 99984221 1121 222222221 145799999999999998643
No 123
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=2.3e-17 Score=150.19 Aligned_cols=149 Identities=23% Similarity=0.263 Sum_probs=101.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+++|+.... ..+..+|+|++.....+...+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 53 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENV-------------------------------YIGNWPGVTVEKKEGEFEYNG 53 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSCCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-------------------------------cccCCCCeeccceEEEEEeCC
Confidence 3568999999999999999999952110 112236788887777888889
Q ss_pred eEEEEEeCCCCcccHh-----H-Hhhcc--ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 143 TRFTILDAPGHKSYVP-----N-MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~-----~-~~~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
..+.|+||||+.+|.. . ....+ ..+|++++|+|+... ......+..+...+.| +++|.||+|
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~p-iilv~nK~D 123 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLMEMGAN-LLLALNKMD 123 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---------HHHHHHHHHHHTTTCC-EEEEEECHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---------HHHHHHHHHHHhcCCC-EEEEEEhhh
Confidence 9999999999988731 1 11222 358999999998752 1334444455556777 889999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+..... +......+.+..+ .+++++||++|.|++++.+
T Consensus 124 l~~~~~-------~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 161 (188)
T 2wjg_A 124 LAKSLG-------IEIDVDKLEKILG------VKVVPLSAAKKMGIEELKK 161 (188)
T ss_dssp HHHHTT-------CCCCHHHHHHHHT------SCEEECBGGGTBSHHHHHH
T ss_pred cccccc-------chHHHHHHHHHhC------CCeEEEEecCCCCHHHHHH
Confidence 832110 0012222333333 4699999999999998643
No 124
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.71 E-value=9.6e-17 Score=145.62 Aligned_cols=151 Identities=20% Similarity=0.224 Sum_probs=97.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|... ... . ...|+......+..++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~--~~~----------------------------~----~~~t~g~~~~~~~~~~ 59 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE--DIS----------------------------H----ITPTQGFNIKSVQSQG 59 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS--CCE----------------------------E----EEEETTEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC--CCC----------------------------c----ccCcCCeEEEEEEECC
Confidence 45699999999999999999999421 000 0 0112222233456678
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHH-H---HcCCceEEEEEeeccCCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~-~---~~~~~~~ivviNK~D~~~~ 218 (496)
..+.++||||++.|...+...+..+|++++|+|++.... + ....+.+..+ . ..+.| +++|.||+|+...
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR---F---EETGQELTELLEEEKLSCVP-VLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECcCcccC
Confidence 999999999999998888888899999999999987521 0 0112222222 1 13566 8999999999533
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. . .+++.+. +...... ...++++++||++|.|++++
T Consensus 133 ~-~---~~~~~~~----~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 133 A-P---ASEIAEG----LNLHTIR-DRVWQIQSCSALTGEGVQDG 168 (181)
T ss_dssp C-C---HHHHHHH----TTGGGCC-SSCEEEEECCTTTCTTHHHH
T ss_pred C-C---HHHHHHH----hCchhcc-CCceEEEEccCCCCCCHHHH
Confidence 2 1 1222222 1111011 12468999999999999985
No 125
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.71 E-value=5.7e-17 Score=151.00 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=93.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~- 141 (496)
++.++|+++|++|+|||||+++|+... ... ....++.+ ...+.++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~--~~~------------------------------~~~~~~~~--~~~~~~~~ 50 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ--YRD------------------------------TQTSITDS--SAIYKVNN 50 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC--CCC------------------------------BCCCCSCE--EEEEECSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--ccc------------------------------ccCCccee--eEEEEecC
Confidence 456899999999999999999996321 110 00112222 2235555
Q ss_pred --CeEEEEEeCCCCcccHh-HHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH----H-----cCCceEEEE
Q 010985 142 --TTRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----T-----LGVTKLLLV 209 (496)
Q Consensus 142 --~~~i~liDtpG~~~~~~-~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~----~-----~~~~~~ivv 209 (496)
+..+.|+||||+.+|.. .....+..+|++|+|+|++... .+..+....+. . .++| +++|
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~p-iilv 121 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ--------REVKDVAEFLYQVLIDSMALKNSPS-LLIA 121 (214)
T ss_dssp TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH--------HHHHHHHHHHHHHHHHHHTSTTCCE-EEEE
T ss_pred CCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC--------HHHHHHHHHHHHHHhhhhhcccCCC-EEEE
Confidence 67899999999999877 3444578999999999997621 11222222111 1 2456 8999
Q ss_pred EeeccCCCCCccHHHHHHHHHHHHHHHHh---------------------cC-----CCc-c--CCeeEEeeccccc---
Q 010985 210 VNKMDDHTVNWSKERYDEIESKMTPFLKA---------------------SG-----YNV-K--KDVQFLPISGLMG--- 257 (496)
Q Consensus 210 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~---------------------~~-----~~~-~--~~~~~ipiSa~~g--- 257 (496)
+||+|+..... .+++.+.+...+.. .+ |.. . ..++++++||++|
T Consensus 122 ~nK~Dl~~~~~----~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~ 197 (214)
T 2fh5_B 122 CNKQDIAMAKS----AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGD 197 (214)
T ss_dssp EECTTSTTCCC----HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----
T ss_pred EECCCCCCccc----HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcc
Confidence 99999954332 22333333333331 00 000 0 1578999999999
Q ss_pred ---cccccc
Q 010985 258 ---LNMKTR 263 (496)
Q Consensus 258 ---~gi~~l 263 (496)
.|++++
T Consensus 198 ~~~~gv~~l 206 (214)
T 2fh5_B 198 TGSADIQDL 206 (214)
T ss_dssp --CCBCHHH
T ss_pred ccccChHHH
Confidence 999885
No 126
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.71 E-value=6.2e-17 Score=151.05 Aligned_cols=148 Identities=13% Similarity=0.132 Sum_probs=98.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~- 141 (496)
...++|+++|++|+|||||+++|+... .. ....+.++.+.....+.+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 71 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK--FN-----------------------------PKFITTVGIDFREKRVVYNA 71 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC--CC-----------------------------CEEEEEEEEEEEEEEEEEEC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC--CC-----------------------------cCCCCceeEEEEEEEEEECC
Confidence 456999999999999999999995211 10 0111222333333333333
Q ss_pred -----------CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHH-------cC
Q 010985 142 -----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT-------LG 202 (496)
Q Consensus 142 -----------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~-------~~ 202 (496)
...+.|+||||+++|...+...+..+|++|+|+|++... +.+.+ ..+.. .+
T Consensus 72 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~----------s~~~~~~~l~~i~~~~~~~~ 141 (217)
T 2f7s_A 72 QGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ----------SFLNVRNWMSQLQANAYCEN 141 (217)
T ss_dssp -------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH----------HHHHHHHHHHTCCCCCTTTC
T ss_pred ccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCcCC
Confidence 567999999999999888888889999999999998752 22222 22222 24
Q ss_pred CceEEEEEeeccCCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 203 VTKLLLVVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 203 ~~~~ivviNK~D~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+| +++|+||+|+... .... .++..+.+..+ ++++++||++|.|++++.+
T Consensus 142 ~p-iilV~NK~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 191 (217)
T 2f7s_A 142 PD-IVLIGNKADLPDQREVNE-------RQARELADKYG------IPYFETSAATGQNVEKAVE 191 (217)
T ss_dssp CE-EEEEEECTTCGGGCCSCH-------HHHHHHHHHTT------CCEEEEBTTTTBTHHHHHH
T ss_pred CC-EEEEEECCccccccccCH-------HHHHHHHHHCC------CcEEEEECCCCCCHHHHHH
Confidence 55 8999999998431 1122 22333444443 4699999999999998654
No 127
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.5e-16 Score=146.01 Aligned_cols=152 Identities=17% Similarity=0.142 Sum_probs=96.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+... ..... ....+.+.. ....+....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~---------------------------~~t~~~~~~-~~~~~~~~~ 55 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRDTY---------------------------IPTIEDTYR-QVISCDKSV 55 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSC--CCCTT---------------------------SCCCCEEEE-EEEEETTEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCC--CCCcc---------------------------cCcccccee-EEEEECCEE
Confidence 356899999999999999999996311 11000 000111111 111122234
Q ss_pred eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEeeccCCC
Q 010985 143 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-----~~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+.+|.......+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+..
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~ 128 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQS---L---EELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQ 128 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSS
T ss_pred EEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCc
Confidence 578999999999998888788889999999999986421 1 112222322322 2567 899999999954
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.....+.. ..+.+..+ ++++++||++|.|++++.
T Consensus 129 ~~~~~~~~-------~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 129 REVDTREA-------QAVAQEWK------CAFMETSAKMNYNVKELF 162 (199)
T ss_dssp CSSCHHHH-------HHHHHHHT------CEEEECBTTTTBSHHHHH
T ss_pred cccCHHHH-------HHHHHHhC------CeEEEEecCCCCCHHHHH
Confidence 33332222 22233332 479999999999999853
No 128
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=9.9e-17 Score=146.88 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=99.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+.. .+... ...++.+.....+..++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~ 63 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAND--AFPEE------------------------------YVPTVFDHYAVSVTVGG 63 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHS--SCCCS------------------------------CCCSSCCCEEEEEESSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCcccceeEEEEEECC
Confidence 45689999999999999999999632 11100 01111111122344444
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~~--~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+.+|.......+..+|++|+|+|++.... + .... ..+..+... ++| +++|+||+|+..
T Consensus 64 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 136 (194)
T 2atx_A 64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---F---QNVKEEWVPELKEYAPNVP-FLLIGTQIDLRD 136 (194)
T ss_dssp CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTCC-EEEEEECTTSTT
T ss_pred EEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 678999999999998888888899999999999987531 0 0111 223334433 677 899999999943
Q ss_pred CCccHHHHH------HHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VNWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~~~~~~~~------~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.....+.+. -..++...+.+..++ .+++++||++|.|++++.
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 184 (194)
T 2atx_A 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGA-----CCYVECSALTQKGLKTVF 184 (194)
T ss_dssp CHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-----SCEEECCTTTCTTHHHHH
T ss_pred cccchhhcccccCcccCHHHHHHHHHHcCC-----cEEEEeeCCCCCCHHHHH
Confidence 210000000 001233344444443 268999999999999863
No 129
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4e-17 Score=153.29 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=97.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+...-.. ...+.++.+.....+..++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 59 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM-------------------------------DSKSTIGVEFATRTLEIEG 59 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------------------------------------CCSEEEEEEEETT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------CCCCcccceeEEEEEEECC
Confidence 456899999999999999999996321110 0112233333334455555
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.+.. + ......+..+... ++| +++|+||+|+..
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~ 132 (223)
T 3cpj_B 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS---Y---ENCNHWLSELRENADDNVA-VGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH---H---HHHHHHHHHHHHHCC--CE-EEEEECCGGGGG
T ss_pred EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 689999999999998877888899999999999987532 0 0112223333332 566 899999999842
Q ss_pred C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ....+ +...+.+.. .++++++||++|.|++++.+
T Consensus 133 ~~~v~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 133 LRAVPTE-------ESKTFAQEN------QLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp GCCSCHH-------HHHHHHHHT------TCEEEECCCC-CCCHHHHHH
T ss_pred ccccCHH-------HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 11211 222333333 35799999999999998643
No 130
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=8.1e-17 Score=145.94 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=98.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
..+.++|+++|++|+|||||+++|+... +.. ....++.+.....+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~ 62 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDE--FVE------------------------------DYEPTKADSYRKKVVLD 62 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSC--CCC------------------------------SCCTTCCEEEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CCC------------------------------cCCCccceEEEEEEEEC
Confidence 3457999999999999999999996321 110 00122222222334444
Q ss_pred C--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccC
Q 010985 142 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~ 215 (496)
+ ..+.|+||||+.+|...+...+..+|++++|+|++.... + ......+..+.. .++| +++|+||+|+
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 135 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---F---AATADFREQILRVKEDENVP-FLLVGNKSDL 135 (187)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHCCTTCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4 578999999999998888888899999999999986421 0 011122222222 2567 8999999998
Q ss_pred CCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... .... .++..+++..+ ++++++||++|.|++++.+
T Consensus 136 ~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 136 EDKRQVSV-------EEAKNRAEQWN------VNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp GGGCCSCH-------HHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred cccCccCH-------HHHHHHHHHcC------CeEEEeCCCCCCCHHHHHH
Confidence 432 1111 22333444443 5799999999999998643
No 131
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.70 E-value=3e-17 Score=153.86 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=104.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
.....++|+++|.+|+|||||+++|+...-. .......|+|.......+..
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 61 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFE-----------------------------KKYVATLGVEVHPLVFHTNR 61 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHT-----------------------------CEEETTTTEEEEEEEEEETT
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCccceeEEEEEEEECC
Confidence 3456799999999999999999996421100 01112356777766666666
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~~~~ 218 (496)
.+..+.|+||||++.|.......+..+|++|+|+|++.+... ......+..+... ++| +++|+||+|+...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTY------KNVPNWHRDLVRVCENIP-IVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHH------HTHHHHHHHHHHHSTTCC-EEEEEECTTSSSC
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCC-EEEEEECCccccc
Confidence 678899999999999877777778899999999999875321 0112222222222 667 8999999999543
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.... +...+.+.. .++++++||++|.|+.++..
T Consensus 135 ~~~~--------~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 135 KVKA--------KSIVFHRKK------NLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp SSCG--------GGCCHHHHH------TCEEEECBGGGTBTTTHHHH
T ss_pred cccH--------HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 2211 112223333 35799999999999998643
No 132
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=3.1e-17 Score=149.65 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=95.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..++.++|+++|++|+|||||+++|+... .. ....+.++.+.....+..
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~ 64 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGR--FP-----------------------------DRTEATIGVDFRERAVDI 64 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSS--CC-----------------------------SSCCCCCSCCEEEEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCC--CC-----------------------------CCCCCCcceEEEEEEEEE
Confidence 44567999999999999999999996321 11 011122333333444555
Q ss_pred CC--eEEEEEeCCCCcccH-hHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-H---cCCceEEEEEeec
Q 010985 141 ET--TRFTILDAPGHKSYV-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T---LGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~--~~i~liDtpG~~~~~-~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~---~~~~~~ivviNK~ 213 (496)
++ ..+.|+||||+++|. ......++.+|++|+|+|++....- ......+..+. . .++| +++|+||+
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~------~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 137 (189)
T 1z06_A 65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASF------HSLPAWIEECKQHLLANDIP-RILVGNKC 137 (189)
T ss_dssp TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHH------HTHHHHHHHHHHHCCCSCCC-EEEEEECT
T ss_pred CCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 54 689999999999887 5566667899999999999874210 01122222222 2 2566 89999999
Q ss_pred cCCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccc---cccccc
Q 010985 214 DDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTR 263 (496)
Q Consensus 214 D~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g---~gi~~l 263 (496)
|+... ....+ +...+.+..+ ++++++||++| .|+.++
T Consensus 138 Dl~~~~~v~~~-------~~~~~~~~~~------~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 138 DLRSAIQVPTD-------LAQKFADTHS------MPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp TCGGGCCSCHH-------HHHHHHHHTT------CCEEECCSSSGGGGSCHHHH
T ss_pred cccccceeCHH-------HHHHHHHHcC------CEEEEEeCCcCCcccCHHHH
Confidence 98422 11221 2223333333 46999999999 777664
No 133
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.70 E-value=5.1e-17 Score=163.54 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=97.6
Q ss_pred CCcceeE-EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 61 NNKRHLN-VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 61 ~~~~~~~-i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
..+..+. |+++|++|+|||||+|+|+.... ..+...++|+|.....+.
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-------------------------------~~~~~~~~T~d~~~~~i~ 222 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-------------------------------KVDTKLFTTMSPKRYAIP 222 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEE
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-------------------------------cccCCcccccCCEEEEEE
Confidence 3444454 99999999999999999963211 111236788888888888
Q ss_pred eCCeEEEEEeCCCCccc--------HhHHhhccccCCEEEEEEeCCCCc--cccccCCCCchHHHHHHHHHc---CCceE
Q 010985 140 TETTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGE--FETGFEKGGQTREHVMLAKTL---GVTKL 206 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~--~e~~~~~~~~t~e~~~~~~~~---~~~~~ 206 (496)
+++..+.++||||+... .+.+...+..+|++++|+|++.+. .+ .+.......+..+ +.| +
T Consensus 223 ~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~------~~~~~~~~~L~~l~~~~~p-~ 295 (364)
T 2qtf_A 223 INNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLI------ETLQSSFEILREIGVSGKP-I 295 (364)
T ss_dssp ETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHH------HHHHHHHHHHHHHTCCSCC-E
T ss_pred ECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHH------HHHHHHHHHHHHhCcCCCC-E
Confidence 99999999999996221 344566788999999999998763 11 1112223344443 456 8
Q ss_pred EEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 207 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 207 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+|.||+|+.... .. +....+..+...+.. ...+++++||++|.|++++.+
T Consensus 296 ilV~NK~Dl~~~~--~~---~~~~~~~~l~~~l~~---~~~~~~~~SA~~g~gi~~L~~ 346 (364)
T 2qtf_A 296 LVTLNKIDKINGD--LY---KKLDLVEKLSKELYS---PIFDVIPISALKRTNLELLRD 346 (364)
T ss_dssp EEEEECGGGCCSC--HH---HHHHHHHHHHHHHCS---CEEEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCCCCch--HH---HHHHHHHHHHHHhcC---CCCcEEEEECCCCcCHHHHHH
Confidence 9999999984321 11 111222222233211 134689999999999998643
No 134
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.70 E-value=9.2e-17 Score=145.46 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=97.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
...+.++|+++|++|+|||||+++|+.. .... ...+.+.... ...+..
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~--~~~~-----------------------------~~~~t~~~~~-~~~~~~ 61 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQK--IFVD-----------------------------DYDPTIEDSY-LKHTEI 61 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHS--CCCS-----------------------------CCCTTCCEEE-EEEEEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhC--CCCC-----------------------------CCCCCcccee-EEEEEe
Confidence 3456799999999999999999999632 1110 0001111122 333444
Q ss_pred CC--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeecc
Q 010985 141 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMD 214 (496)
Q Consensus 141 ~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~----~~~~~~~ivviNK~D 214 (496)
++ ..+.|+||||+++|.......+..+|++++|+|++.+.. +. .....+..+. ..++| +++|+||+|
T Consensus 62 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D 134 (183)
T 3kkq_A 62 DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKAS---FE---HVDRFHQLILRVKDRESFP-MILVANKVD 134 (183)
T ss_dssp TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTSSCCC-EEEEEECTT
T ss_pred CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECCC
Confidence 44 446679999999988777777889999999999987532 10 1122222221 24567 899999999
Q ss_pred CCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccc-cccccccccc
Q 010985 215 DHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRVD 265 (496)
Q Consensus 215 ~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~-~g~gi~~l~~ 265 (496)
+... ....+ +...+.+..+ ++++++||+ +|.|++++.+
T Consensus 135 l~~~~~v~~~-------~~~~~~~~~~------~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 135 LMHLRKVTRD-------QGKEMATKYN------IPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp CSTTCCSCHH-------HHHHHHHHHT------CCEEEEBCSSSCBSHHHHHH
T ss_pred chhccCcCHH-------HHHHHHHHhC------CeEEEeccCCCCCCHHHHHH
Confidence 8431 12222 2233344443 469999999 9999998643
No 135
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.70 E-value=3e-16 Score=143.75 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=98.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
..+..++|+++|++|+|||||+++|+... +... ...++.+.....+..
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~ 66 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGE--IPTA------------------------------YVPTVFENFSHVMKY 66 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSC--CCSS------------------------------CCCCSEEEEEEEEEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCC--CCCc------------------------------cCCeeeeeeEEEEEE
Confidence 45567999999999999999999996321 1100 011111111223334
Q ss_pred CC--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCch-HHHHHHHHHc--CCceEEEEEeeccC
Q 010985 141 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t-~e~~~~~~~~--~~~~~ivviNK~D~ 215 (496)
++ ..+.|+||||+++|.......+..+|++|+|+|++..... . .. ...+..+... ++| +++|+||+|+
T Consensus 67 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 139 (194)
T 3reg_A 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSF---D---NISTKWEPEIKHYIDTAK-TVLVGLKVDL 139 (194)
T ss_dssp TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH---H---HHHHTHHHHHHHHCTTSE-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 44 5569999999999988888889999999999999875210 0 11 1122233332 456 8999999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
....... ...+++..+.+..++. +++++||++|.|++++.+
T Consensus 140 ~~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~ 180 (194)
T 3reg_A 140 RKDGSDD----VTKQEGDDLCQKLGCV-----AYIEASSVAKIGLNEVFE 180 (194)
T ss_dssp CCTTTTC----CCHHHHHHHHHHHTCS-----CEEECBTTTTBSHHHHHH
T ss_pred ccCCCCc----ccHHHHHHHHHhcCCC-----EEEEeecCCCCCHHHHHH
Confidence 5321011 1112333444445432 389999999999998643
No 136
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.70 E-value=1.2e-16 Score=142.64 Aligned_cols=150 Identities=16% Similarity=0.145 Sum_probs=88.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|++|+|||||+++|+....... .....+.+.....+..++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-------------------------------HEMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------------------------------------CEEEEEEEETTEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-------------------------------ccCCCcCCeeeEEEEECCeE
Confidence 47999999999999999999953221100 012233444444444544
Q ss_pred eEEEEEeCCCCcccHhHH-hhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEeeccCCC
Q 010985 143 TRFTILDAPGHKSYVPNM-ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~-~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~----~~~~~ivviNK~D~~~ 217 (496)
..+.++||||+.+|...+ ...+..+|++++|+|++.... +. ...+.+..+... ++| +++|+||+|+..
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 123 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLP-VILVGNKSDLAR 123 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCC-EEEEEECTTCGG
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHH---HH---HHHHHHHHHHhcccCCCCC-EEEEeeCcchhh
Confidence 667899999998886533 334678999999999987421 11 222223333222 567 899999999842
Q ss_pred C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ..+.+ +...+.+.. .++++++||++|.|++++.+
T Consensus 124 ~~~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 159 (169)
T 3q85_A 124 SREVSLE-------EGRHLAGTL------SCKHIETSAALHHNTRELFE 159 (169)
T ss_dssp GCCSCHH-------HHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred cccCCHH-------HHHHHHHHc------CCcEEEecCccCCCHHHHHH
Confidence 1 12222 223333443 35799999999999998643
No 137
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.70 E-value=2.7e-16 Score=148.15 Aligned_cols=159 Identities=15% Similarity=0.222 Sum_probs=98.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|.+|+|||||+++|+... . .....+++|.+.....+...+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~--~-----------------------------~~~~~~~~t~~~~~~~~~~~~ 75 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN--V-----------------------------DVQSYSFTTKNLYVGHFDHKL 75 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC--E-----------------------------EEECC-----CEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--C-----------------------------ccCCCCCcceeeeeeeeecCC
Confidence 356899999999999999999995211 0 011125677777777777788
Q ss_pred eEEEEEeCCCCc------cc---HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEe
Q 010985 143 TRFTILDAPGHK------SY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVN 211 (496)
Q Consensus 143 ~~i~liDtpG~~------~~---~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviN 211 (496)
..+.|+||||+. .. ...+......+|++|+|+|++.... +.. ....+.+..+... ++| +++|+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~-~~~~~~~~~l~~~~~~~p-iilv~n 150 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LTI-KEQINLFYSIKSVFSNKS-IVIGFN 150 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SCH-HHHHHHHHHHHTCC-CCC-EEEEEE
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cch-HHHHHHHHHHHHhhcCCc-EEEEEe
Confidence 999999999983 31 1122233567899999999987632 100 0112233334333 677 899999
Q ss_pred eccCCCCC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 212 KMDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 212 K~D~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+|+.... ... +....+..+.+..+ ...+++++||++|.|++++.+
T Consensus 151 K~Dl~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~SA~~g~gi~~l~~ 197 (228)
T 2qu8_A 151 KIDKCNMDSLSI----DNKLLIKQILDNVK----NPIKFSSFSTLTGVGVEQAKI 197 (228)
T ss_dssp CGGGCC--CCCH----HHHHHHHHHHHHCC----SCEEEEECCTTTCTTHHHHHH
T ss_pred CcccCCchhhHH----HHHHHHHHHHHhcC----CCceEEEEecccCCCHHHHHH
Confidence 99984321 111 12223344444332 126899999999999998644
No 138
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.69 E-value=5.5e-17 Score=161.57 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=98.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.++.++|+++|++|+|||||+++|+. +.+. + .-.|++.....++..
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~--~~~~------------------------------~--~~pT~~~~~~~~~~~ 207 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKL--GEIV------------------------------T--TIPTIGFNVETVEYK 207 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCS--SCCE------------------------------E--EEEETTEEEEEEEET
T ss_pred ccCcceEEEECCCCccHHHHHHHHhC--CCCC------------------------------C--cccccceEEEEEecC
Confidence 34567999999999999999999841 1110 0 113555666677888
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHHc---CCceEEEEEeeccCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL---GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~~---~~~~~ivviNK~D~~~ 217 (496)
+..+.|+||||++.|.......+..+|++|+|+|++.... +. ...+.+ .++... ++| +|+|+||+|+..
T Consensus 208 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~ 280 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---VN---EAREELMRMLAEDELRDAV-LLVFANKQDLPN 280 (329)
T ss_dssp TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS---HH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH---HH---HHHHHHHHHHhhhccCCCe-EEEEEECccCCc
Confidence 9999999999999998888888899999999999986421 10 112222 222222 566 899999999953
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. . .+++...+ ...... ...++++++||++|.|++++.+
T Consensus 281 ~~-~---~~~i~~~~----~~~~~~-~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 281 AM-N---AAEITDKL----GLHSLR-HRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp CC-C---HHHHHHHH----TCTTCC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred cc-C---HHHHHHHh----chhhhh-cCCCEEEEEECCCCcCHHHHHH
Confidence 32 1 12222222 111111 2357899999999999998643
No 139
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=145.75 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=96.1
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 60 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 60 ~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
......++|+++|++|+|||||+++|+... ... ....++.+.....+.
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~ 62 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPT------------------------------EYIPTAFDNFSAVVS 62 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC----------------------------------------CCSSEEEEEEEE
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCC--CCC------------------------------CCCCcccceeEEEEE
Confidence 345667999999999999999999996321 110 001222222233445
Q ss_pred eCC--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeecc
Q 010985 140 TET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMD 214 (496)
Q Consensus 140 ~~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~~--~~~~~ivviNK~D 214 (496)
.++ ..+.|+||||+++|.......+..+|++|+|+|++..... .... ..+..+... ++| +++|+||+|
T Consensus 63 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~ilv~nK~D 135 (201)
T 2q3h_A 63 VDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSF------QNVSEKWVPEIRCHCPKAP-IILVGTQSD 135 (201)
T ss_dssp ETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHH------HHHHHTHHHHHHHHCSSSC-EEEEEECGG
T ss_pred ECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHH------HHHHHHHHHHHHHhCCCCC-EEEEEECHh
Confidence 555 4677999999999877767778899999999999875210 0111 122223322 667 899999999
Q ss_pred CCCCCccHHHHHH---------HHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 215 DHTVNWSKERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 215 ~~~~~~~~~~~~~---------i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+... ...... ..++...+.+..++ .+++++||++|.|++++.+
T Consensus 136 l~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 136 LRED---VKVLIELDKCKEKPVPEEAAKLLAEEIKA-----ASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp GGGC---HHHHHHHHTTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred hhhc---hhhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEEecCCCCCHHHHHH
Confidence 8421 100000 01223334444432 3799999999999998643
No 140
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=2e-17 Score=172.14 Aligned_cols=148 Identities=22% Similarity=0.271 Sum_probs=99.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+|+|+...-.+ ....+|+|++.....+++.+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------------------------v~~~~g~t~~~~~~~~~~~~ 70 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWLN 70 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECTTCS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------------cCCCCCcceeEEEEEEEECC
Confidence 446799999999999999999995322111 11237999999999999999
Q ss_pred eEEEEEeCCC--------CcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 143 TRFTILDAPG--------HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 143 ~~i~liDtpG--------~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
..+.|+|||| ++.+...+..++..||++|+|+|+..+.. ....+.+..+...+.| +|+|+||+|
T Consensus 71 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~-------~~d~~l~~~l~~~~~p-vilV~NK~D 142 (456)
T 4dcu_A 71 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVNKLD 142 (456)
T ss_dssp SCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC-------HHHHHHHHHHTTCCSC-EEEEEECC-
T ss_pred ceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC-------hHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 9999999999 56667777778889999999999988743 3556666666667888 899999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+.... ....++ ..+++. ..+++||++|.|+.++.
T Consensus 143 ~~~~~----------~~~~e~-~~lg~~-----~~~~iSA~~g~gv~~L~ 176 (456)
T 4dcu_A 143 NTEMR----------ANIYDF-YSLGFG-----EPYPISGTHGLGLGDLL 176 (456)
T ss_dssp ------------------CCS-GGGSSS-----SEEECCTTTCTTHHHHH
T ss_pred chhhh----------hhHHHH-HHcCCC-----ceEEeecccccchHHHH
Confidence 83210 111111 123432 35799999999999853
No 141
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=2.4e-16 Score=146.13 Aligned_cols=158 Identities=14% Similarity=0.109 Sum_probs=96.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
..++|+++|.+|+|||||+++|+...- ... . ..++.+.....+..++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~-----------------------------~-~~t~~~~~~~~~~~~~~ 71 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEF--PEV-----------------------------Y-VPTVFENYVADIEVDGK 71 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--C-------------------------------------CCEEEEEEEETTE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCC--CCc-----------------------------C-CCcccceEEEEEEECCE
Confidence 458999999999999999999963211 100 0 0111111112234444
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCch-HHHHHHHHHc--CCceEEEEEeeccCCCC
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t-~e~~~~~~~~--~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||+++|.......+..+|++|+|+|++.... + ... ...+..+... ++| +++|+||+|+...
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 144 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDS---L---ENIPEKWVPEVKHFCPNVP-IILVANKKDLRSD 144 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGC
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEchhhhcc
Confidence 578999999999998877788899999999999987421 0 011 1223333333 677 8999999998432
Q ss_pred CccHHHHHHH------HHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEI------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i------~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
....+.+.+. ..+...+.+..++ .+++++||++|.|++++.+
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~~ 192 (207)
T 2fv8_A 145 EHVRTELARMKQEPVRTDDGRAMAVRIQA-----YDYLECSAKTKEGVREVFE 192 (207)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred ccchhhhhhcccCCCCHHHHHHHHHhcCC-----CEEEEeeCCCCCCHHHHHH
Confidence 1111111100 1122233333332 2799999999999998643
No 142
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.69 E-value=5.3e-17 Score=150.04 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=75.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~- 141 (496)
...++|+++|++|+|||||+++|+.....+.. +..+.+..+.....+..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 68 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK-----------------------------DYAMTSGVEVVVAPVTIPD 68 (208)
T ss_dssp EEEEEEEEC---------------------------------------------------------------CEEEECTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC-----------------------------CCCCccceEEEEEEEEECC
Confidence 45689999999999999999999632111110 001112234444555565
Q ss_pred ---CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEee
Q 010985 142 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNK 212 (496)
Q Consensus 142 ---~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~------~~~~~~ivviNK 212 (496)
...+.|+||||+.+|...+...+..+|++|+|+|++.+.. + ......+..+.. .++| +++|+||
T Consensus 69 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK 141 (208)
T 2yc2_C 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES---F---ESCKAWFELLKSARPDRERPLR-AVLVANK 141 (208)
T ss_dssp SSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHH---H---HHHHHHHHHHHHHCSCTTSCCE-EEEEEEC
T ss_pred cccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHH---H---HHHHHHHHHHHHhhcccccCCc-EEEEEEC
Confidence 4689999999999998888888999999999999987531 0 122233333333 3566 8999999
Q ss_pred ccCCC-C-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccc-ccccccccc
Q 010985 213 MDDHT-V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM-GLNMKTRVD 265 (496)
Q Consensus 213 ~D~~~-~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~-g~gi~~l~~ 265 (496)
+|+.. . ..+. +++..+.+..+ ++++++||++ |.|+.++.+
T Consensus 142 ~Dl~~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 142 TDLPPQRHQVRL-------DMAQDWATTNT------LDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp C-------CCCH-------HHHHHHHHHTT------CEEEECCC-------CHHHH
T ss_pred cccchhhccCCH-------HHHHHHHHHcC------CEEEEeccCCCCcCHHHHHH
Confidence 99843 1 1111 23334444443 5799999999 999998644
No 143
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.69 E-value=9.9e-17 Score=148.03 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=99.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|.+|+|||||+++|+...- .. ...+.++.+.. ..+..+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~-----------------------------~~~~t~~~~~~-~~~~~~ 69 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQF--PE-----------------------------VYVPTVFENYI-ADIEVD 69 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSC--CS-----------------------------SCCCSSCCCCE-EEEEET
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcC--Cc-----------------------------ccCCcccceEE-EEEEEC
Confidence 34568999999999999999999963211 00 00111222221 223444
Q ss_pred C--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCch-HHHHHHHHHc--CCceEEEEEeeccCC
Q 010985 142 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDH 216 (496)
Q Consensus 142 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t-~e~~~~~~~~--~~~~~ivviNK~D~~ 216 (496)
+ ..+.|+||||+++|.......+..+|++|+|+|++.... + ... ...+..+... ++| +++|+||+|+.
T Consensus 70 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 2gco_A 70 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLR 142 (201)
T ss_dssp TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTCC-EEEEEECGGGT
T ss_pred CEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEecHHhh
Confidence 4 578999999999998777778899999999999987421 0 011 1223333333 677 89999999994
Q ss_pred CCCccHHHHHH------HHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 217 TVNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 217 ~~~~~~~~~~~------i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
......+.+.+ ..++...+.+..++ .+++++||++|.|++++.+
T Consensus 143 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~~ 192 (201)
T 2gco_A 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISA-----FGYLECSAKTKEGVREVFE 192 (201)
T ss_dssp TCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred cCccchhhhcccccCcCCHHHHHHHHHhCCC-----cEEEEeeCCCCCCHHHHHH
Confidence 32111111100 01233344444442 2799999999999998643
No 144
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.69 E-value=9.3e-17 Score=145.08 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=91.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEE--Ee
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF--ET 140 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~--~~ 140 (496)
...++|+++|++|+|||||+++|+.. ...... ..++.+.....+ ..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~--~~~~~~------------------------------~~t~~~~~~~~~~~~~ 53 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPTDY------------------------------VPTVFDNFSANVVVNG 53 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS--CCC----------------------------------------CBCCCC---
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--CCCCCC------------------------------CCeeeeeEEEEEEECC
Confidence 34689999999999999999999632 111110 111111111111 22
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~~--~~~~~ivviNK~D~~~ 217 (496)
....+.|+||||+++|.......+..+|++++|+|++....- .... ..+..+... ++| +++|+||+|+..
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 126 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY------ENVSKKWIPELKHYAPGVP-IVLVGTKLDLRD 126 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHH------HHHHHTHHHHHHHHCTTCC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHH------HHHHHHHHHHHHHhCCCCC-EEEEEechhhhc
Confidence 245677999999999988888888999999999999875210 0111 122233332 567 899999999832
Q ss_pred CCccHHHHH-------HHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 218 VNWSKERYD-------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 218 ~~~~~~~~~-------~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. .. ... ...++...+.+..++ .+++++||++|.|++++.
T Consensus 127 ~--~~-~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 172 (182)
T 3bwd_D 127 D--KQ-FFIDHPGAVPITTVQGEELKKLIGA-----PAYIECSSKSQENVKGVF 172 (182)
T ss_dssp C--HH-HHHHC--CCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHH
T ss_pred C--cc-cccccccCCCCCHHHHHHHHHHcCC-----CEEEEEECCCCCCHHHHH
Confidence 1 11 000 012233344444442 379999999999999853
No 145
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=146.72 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=84.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|.+|+|||||+++|+... ... . ...++.+.....+..++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~-----------------------------~-~~~t~~~~~~~~~~~~~ 79 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGA--FPE-----------------------------S-YTPTVFERYMVNLQVKG 79 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------------------------------------CCCCCEEEEEEEEETT
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCC--CCC-----------------------------C-CCCccceeEEEEEEECC
Confidence 456999999999999999999996211 000 0 01122222222334444
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~~--~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|.......+..+|++|+|+|++.... +. ... ..+..+... ++| +++|+||+|+..
T Consensus 80 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 152 (214)
T 2j1l_A 80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNS---FD---NIFNRWYPEVNHFCKKVP-IIVVGCKTDLRK 152 (214)
T ss_dssp EEEEEEEEEC---------------CEEEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSCC-EEEEEECGGGGS
T ss_pred EEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhhc
Confidence 478999999999998777778889999999999987521 00 111 122222222 567 899999999843
Q ss_pred CCccHHHHHHH---------HHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 VNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ....+.+ .++...+.+..++ .+++++||++|.|++++.+
T Consensus 153 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~~ 201 (214)
T 2j1l_A 153 D---KSLVNKLRRNGLEPVTYHRGQEMARSVGA-----VAYLECSARLHDNVHAVFQ 201 (214)
T ss_dssp C---HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECBTTTTBSHHHHHH
T ss_pred c---chhhhhhcccccCcccHHHHHHHHHhcCC-----CEEEEecCCCCCCHHHHHH
Confidence 2 1111111 1233444455443 3799999999999998643
No 146
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.68 E-value=6e-17 Score=151.25 Aligned_cols=154 Identities=15% Similarity=0.121 Sum_probs=94.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|.+|+|||||+++|+... ... ......|.+...... ....
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~~-~~~~ 57 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGR--FEK---------------------------NYNATVGAVNHPVTF-LDDQ 57 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCS--TTC---------------------------EEETTTTEEEEEEEE-EBTT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCC--CCC---------------------------CCCCccceeeEEEEE-EeCC
Confidence 3457899999999999999999985211 000 000112222222111 1112
Q ss_pred C--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCC
Q 010985 142 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 216 (496)
Q Consensus 142 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~ 216 (496)
+ ..+.|+||||+++|.......+..+|++|+|+|++.+... ......+..+.. .+.| +++|+||+|+.
T Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (218)
T 4djt_A 58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITC------QNLARWVKEFQAVVGNEAP-IVVCANKIDIK 130 (218)
T ss_dssp SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHHCSSSC-EEEEEECTTCC
T ss_pred CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHH------HHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 2 6799999999998876666777889999999999976321 011122233322 2567 89999999984
Q ss_pred CC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 217 TV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 217 ~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. .... .....+.+.. ..+++++||++|.|++++..
T Consensus 131 ~~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 131 NRQKISK-------KLVMEVLKGK------NYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp ----CCH-------HHHHHHTTTC------CCEEEEEBTTTTBTTTHHHH
T ss_pred cccccCH-------HHHHHHHHHc------CCcEEEEecCCCCCHHHHHH
Confidence 22 1111 2222333332 45799999999999998654
No 147
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.68 E-value=2.3e-16 Score=150.63 Aligned_cols=156 Identities=13% Similarity=0.104 Sum_probs=101.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+|+|+.....+... ...|+|.+.....+.+.+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~-----------------------------~~~~~T~~~~~~~~~~~~ 69 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRL-----------------------------GATSVTRACTTGSRRWDK 69 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccC-----------------------------CCCCccccEEEEEEEECC
Confidence 457999999999999999999997543322111 114577777777888899
Q ss_pred eEEEEEeCCCC--------cccHhHHhhcc----ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc------CCc
Q 010985 143 TRFTILDAPGH--------KSYVPNMISGA----SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVT 204 (496)
Q Consensus 143 ~~i~liDtpG~--------~~~~~~~~~~~----~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~------~~~ 204 (496)
..++|+||||. .++...+.+++ ..+|++|+|+|+..- . ......+..+... +.|
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~-~-------~~~~~~~~~l~~~~~~~~~~~~ 141 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRF-T-------AQDQQAVRQVRDMFGEDVLKWM 141 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBC-C-------HHHHHHHHHHHHHHCGGGGGGE
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC-C-------HHHHHHHHHHHHHhChhhhccE
Confidence 99999999997 55666665554 899999999999741 1 2444445555543 556
Q ss_pred eEEEEEeeccCCCCCccHHHHHHH--HHHHHHHHHhcCCCccCCeeEEeeccc-----ccccccccc
Q 010985 205 KLLLVVNKMDDHTVNWSKERYDEI--ESKMTPFLKASGYNVKKDVQFLPISGL-----MGLNMKTRV 264 (496)
Q Consensus 205 ~~ivviNK~D~~~~~~~~~~~~~i--~~~l~~~l~~~~~~~~~~~~~ipiSa~-----~g~gi~~l~ 264 (496)
+|++.||+|+...+ .+.+-.- ...+..+++.+|.. ++++++. .+.|+.+|+
T Consensus 142 -iilv~nK~Dl~~~~--~~~~l~~~~~~~l~~l~~~~g~~------~~~~~~~~~~~~~~~~v~~Ll 199 (247)
T 3lxw_A 142 -VIVFTRKEDLAGGS--LHDYVSNTENRALRELVAECGGR------VCAFDNRATGREQEAQVEQLL 199 (247)
T ss_dssp -EEEEECGGGGTTCC--HHHHHHHCCCHHHHHHHHHTTTC------EEECCTTCCHHHHHHHHHHHH
T ss_pred -EEEEEchHhcCCCC--HHHHHhhcccHHHHHHHHHcCCe------EEEEeCCCCccccHHHHHHHH
Confidence 88999999994322 2211111 13467777776532 4444433 267887754
No 148
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.67 E-value=2.8e-16 Score=146.09 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=96.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+.. ...... ..++.+.....+..++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~--~~~~~~------------------------------~~t~~~~~~~~~~~~~ 54 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN--KFPTDY------------------------------IPTVFDNFSANVAVDG 54 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS--CCCSSC------------------------------CCSSCCCEEEEEECSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--CCCccC------------------------------CCccceeEEEEEEECC
Confidence 45699999999999999999999632 111000 1111111122233333
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~~--~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|.......+..+|++|+|+|++.... + .... ..+..+... ++| +++|+||+|+..
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 127 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKAS---Y---ENVLKKWMPELRRFAPNVP-IVLVGTKLDLRD 127 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhh
Confidence 689999999999998777778899999999999987521 0 0111 222333333 677 899999999832
Q ss_pred CCccHHHHHH-----HHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 VNWSKERYDE-----IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~~~~~~~~~~-----i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ...... ...+...+.+.+++ .+++++||++|.|++++.+
T Consensus 128 ~---~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 172 (212)
T 2j0v_A 128 D---KGYLADHTNVITSTQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD 172 (212)
T ss_dssp C---HHHHHTCSSCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred C---ccccccccCCCCHHHHHHHHHHcCC-----ceEEEccCCCCCCHHHHHH
Confidence 1 110000 12233344444442 3799999999999998643
No 149
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.67 E-value=3.4e-16 Score=146.05 Aligned_cols=165 Identities=13% Similarity=0.061 Sum_probs=96.7
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEee-eeEE
Q 010985 59 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GRAH 137 (496)
Q Consensus 59 ~~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~-~~~~ 137 (496)
.......++|+++|.+|+|||||+++|+... ... ...+.+..+. ....
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~ 69 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDC--YPE-----------------------------TYVPTVFENYTACLE 69 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSC--CCS-----------------------------SCCCCSEEEEEEEEE
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCC--CCC-----------------------------CcCCeeeeeEEEEEE
Confidence 3345567999999999999999999996321 110 0001111111 1112
Q ss_pred EEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccC
Q 010985 138 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDD 215 (496)
Q Consensus 138 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~--~~~~~ivviNK~D~ 215 (496)
+......+.|+||||+++|.......+..+|++|+|+|++.... +. ......+..+... ++| +++|.||+|+
T Consensus 70 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 143 (214)
T 3q3j_B 70 TEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWRTEILDYCPSTR-VLLIGCKTDL 143 (214)
T ss_dssp C--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHH---HH--HHHTHHHHHHHHHCTTSE-EEEEEECGGG
T ss_pred ECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 33344779999999999998877778899999999999987631 00 0011222333333 566 8999999998
Q ss_pred CCCCccHHH------HHHHHHHHHHHHHhcCCCccCCeeEEeeccccccc-cccccc
Q 010985 216 HTVNWSKER------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 265 (496)
Q Consensus 216 ~~~~~~~~~------~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~g-i~~l~~ 265 (496)
......... .....++...+.+..++. +++.+||++|.| ++++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~e~SA~~g~g~v~~lf~ 195 (214)
T 3q3j_B 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE-----IYLEGSAFTSEKSIHSIFR 195 (214)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS-----EEEECCTTTCHHHHHHHHH
T ss_pred ccchhhhhhhcccccCccCHHHHHHHHHHcCCC-----EEEEeccCCCcccHHHHHH
Confidence 421000000 000112333444444431 799999999998 998643
No 150
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.67 E-value=3e-16 Score=165.29 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=104.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.+..++|+++|.+|+|||||+++|+... +. ....|++.....++..
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~--~~--------------------------------~~~~T~~~~~~~~~~~ 364 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQ--SV--------------------------------TTIPTVGFNVETVTYK 364 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSS--CC--------------------------------CCCCCSSEEEEEEESS
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCC--CC--------------------------------CcCCccceeEEEEEeC
Confidence 3567999999999999999999996322 11 0123555666677888
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~~ 217 (496)
+..+.|+||||+++|...+...+..+|++|+|+|++.... +. .....+..+.. .++| +|+|+||+|+..
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---ID---EARQELHRIINDREMRDAI-ILIFANKQDLPD 437 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGG---HH---HHHHHHHHHHTSGGGTTCE-EEEEEECCSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhH---HH---HHHHHHHHHhhhhhcCCCc-EEEEEECCCCCc
Confidence 9999999999999998888888999999999999987521 00 11112222211 2567 899999999943
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. .. +++.. .+...... ...++++++||++|.|++++.+
T Consensus 438 ~~-~~---~~~~~----~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~ 476 (497)
T 3lvq_E 438 AM-KP---HEIQE----KLGLTRIR-DRNWYVQPSCATSGDGLYEGLT 476 (497)
T ss_dssp CC-CH---HHHHH----HTTCTTCC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred CC-CH---HHHHH----Hhchhhhh-cCCeEEEEEECCCCCCHHHHHH
Confidence 21 21 12222 12111111 2356899999999999998643
No 151
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.66 E-value=7.2e-18 Score=183.58 Aligned_cols=230 Identities=17% Similarity=0.140 Sum_probs=126.6
Q ss_pred CchhhhcccccccccccCCCCCCCCCCCcchhcccchhhhhhhcchhhhccccccccccCCcceeEEEEEecCCCChHHH
Q 010985 2 DIEEDIRSLQLDSAEENNGVVNPGDARPEEVEVVDKMEEVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTT 81 (496)
Q Consensus 2 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~aGKSTL 81 (496)
+.+..||..+....+..++.+|++++.-.+......+...+..+...+... .++.++|+|+|++|+|||||
T Consensus 15 ~~~~~~r~~L~~~l~~le~~ld~~e~~~~~~~~~~~l~~~l~~L~~~~~~l---------~~~~~~V~VvG~~naGKSSL 85 (695)
T 2j69_A 15 ERVAQVRSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNL---------QQGVFRLLVLGDMKRGKSTF 85 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCCCHHHHHHHHHHHHHH---------HHCCEEEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh---------ccCCCEEEEECCCCCCHHHH
Confidence 357889999999999999999987742112222222322233333322221 34569999999999999999
Q ss_pred HHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE------------------------------
Q 010985 82 GGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV------------------------------ 131 (496)
Q Consensus 82 ~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~------------------------------ 131 (496)
+|+|++..-...... .++.....+.- ......|+
T Consensus 86 lNaLlg~~~~~v~~~------------p~T~~~~~i~~----g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l 149 (695)
T 2j69_A 86 LNALIGENLLPSDVN------------PCTAVLTVLRY----GPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKL 149 (695)
T ss_dssp HHHHHTSSCSCCCCC------------TTTCCCEEEEE----CSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHH
T ss_pred HHHHhCCCCCCCCCC------------CCccceEEEEe----CCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHH
Confidence 999985432221110 00000000000 00000011
Q ss_pred ---------eeeeEEEEeCC----eEEEEEeCCCCcc---cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH
Q 010985 132 ---------EVGRAHFETET----TRFTILDAPGHKS---YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 195 (496)
Q Consensus 132 ---------~~~~~~~~~~~----~~i~liDtpG~~~---~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~ 195 (496)
+.....+.+.. ..++|+||||+.+ ....+...+..||++|+|+|++.+.. ....+.+
T Consensus 150 ~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s-------~~e~~~l 222 (695)
T 2j69_A 150 EQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT-------LGERRYL 222 (695)
T ss_dssp HTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTC-------HHHHHHH
T ss_pred hhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccc-------hhHHHHH
Confidence 11111222221 4699999999765 34556667789999999999987632 1223333
Q ss_pred H-HHHHcCCceEEEEEeeccCCCCC-ccH---HHHHHHHHHHH----HHHHhc----CCCccCCeeEEeeccc-------
Q 010985 196 M-LAKTLGVTKLLLVVNKMDDHTVN-WSK---ERYDEIESKMT----PFLKAS----GYNVKKDVQFLPISGL------- 255 (496)
Q Consensus 196 ~-~~~~~~~~~~ivviNK~D~~~~~-~~~---~~~~~i~~~l~----~~l~~~----~~~~~~~~~~ipiSa~------- 255 (496)
. .+...+.| +++|+||+|+.... .+. +.+++....+. ..+... |+. ....+++++||+
T Consensus 223 ~~~l~~~~~~-iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~-~~~~~v~~vSAk~al~~~~ 300 (695)
T 2j69_A 223 ENYIKGRGLT-VFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQN-IYDERVFELSSIQALRRRL 300 (695)
T ss_dssp HHHTTTSCCC-EEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCB-CGGGTEEECCHHHHHHHHH
T ss_pred HHHHHhhCCC-EEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccc-cCCCcEEEEeChHHHHhhc
Confidence 2 23334667 89999999984221 001 12333222332 223221 111 013479999999
Q ss_pred -------cccccccccc
Q 010985 256 -------MGLNMKTRVD 265 (496)
Q Consensus 256 -------~g~gi~~l~~ 265 (496)
+|.|+.++..
T Consensus 301 ~~~~~~~~~~Gi~~L~~ 317 (695)
T 2j69_A 301 KNPQADLDGTGFPKFMD 317 (695)
T ss_dssp HCTTCCCTTSSHHHHHH
T ss_pred cCchhhhhccCHHHHHH
Confidence 9999987643
No 152
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=3.6e-16 Score=143.51 Aligned_cols=150 Identities=19% Similarity=0.120 Sum_probs=92.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~- 141 (496)
.+.++|+++|++|+|||||+++|+... ... +..+.+..+. ...+..+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~-~~~~~~~~ 73 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR--FIW-----------------------------EYDPTLESTY-RHQATIDD 73 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC--CCS-----------------------------CCCTTCCEEE-EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--CCc-----------------------------ccCCCCCceE-EEEEEECC
Confidence 346899999999999999999996321 100 0001111111 1223333
Q ss_pred -CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCC
Q 010985 142 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 216 (496)
Q Consensus 142 -~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~~ 216 (496)
...+.|+||||+.+ .......+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+.
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~ 145 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGS---F---EEVLPLKNILDEIKKPKNVT-LILVGNKADLD 145 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHTTSCCC-EEEEEECGGGG
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhhCCCCCc-EEEEEECcccc
Confidence 46799999999988 4455566788999999999987421 1 012222222222 3667 89999999984
Q ss_pred CC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccc-ccccccc
Q 010985 217 TV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 265 (496)
Q Consensus 217 ~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~-gi~~l~~ 265 (496)
.. ....+. ...+.+.. .++++++||++|. |+.++.+
T Consensus 146 ~~~~v~~~~-------~~~~~~~~------~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 146 HSRQVSTEE-------GEKLATEL------ACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp GGCCSCHHH-------HHHHHHHH------TSEEEECCTTTCTTCHHHHHH
T ss_pred cccccCHHH-------HHHHHHHh------CCeEEEECCCcCCcCHHHHHH
Confidence 31 122222 22233333 2479999999999 9998643
No 153
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.65 E-value=5.4e-16 Score=150.47 Aligned_cols=159 Identities=14% Similarity=0.184 Sum_probs=86.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|++|+|||||+|+|+.......... + ......++++++.....+..++
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~-----------~------------~~~~~~~t~~~~~~~~~~~~~~~~ 64 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYP-----------G------------PSHRIKKTVQVEQSKVLIKEGGVQ 64 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--CC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCC-----------C------------cccccCCceEEEEEEEEEecCCeE
Confidence 58999999999999999999853221111000 0 0001124455555555555555
Q ss_pred eEEEEEeCCCCcccHhH-----------------Hhhc----------cccCCEEEEEEeCCCCccccccCCCCchHHHH
Q 010985 143 TRFTILDAPGHKSYVPN-----------------MISG----------ASQADIGVLVISARKGEFETGFEKGGQTREHV 195 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~-----------------~~~~----------~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~ 195 (496)
..++|+||||+.+++.. .+.. -..+|+++++|++....+ .....+.+
T Consensus 65 ~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~------~~~d~~~l 138 (274)
T 3t5d_A 65 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL------KPLDIEFM 138 (274)
T ss_dssp EEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSC------CHHHHHHH
T ss_pred EEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCC------CHHHHHHH
Confidence 48999999998443111 1110 123789999997765211 13444444
Q ss_pred HHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 196 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 196 ~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..+.. ++| +|+|+||+|+. ..+.....++.+...++..+ ++++++|+.+|+|+.++.
T Consensus 139 ~~l~~-~~p-vi~V~nK~D~~----~~~e~~~~~~~i~~~l~~~~------i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 139 KRLHE-KVN-IIPLIAKADTL----TPEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENKLV 195 (274)
T ss_dssp HHHTT-TSC-EEEEESSGGGS----CHHHHHHHHHHHHHHHHHTT------CCCCCC-----------C
T ss_pred HHHhc-cCC-EEEEEeccCCC----CHHHHHHHHHHHHHHHHHcC------CeEEcCCCCCChhHHHHH
Confidence 44444 677 89999999983 34556666667777776654 468899999999998853
No 154
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.65 E-value=1.6e-17 Score=153.05 Aligned_cols=150 Identities=20% Similarity=0.188 Sum_probs=93.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+. +.. .....++++.+.....+..++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 79 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFAD--DTY-----------------------------TESYISTIGVDFKIRTIELDG 79 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBC--CCC-----------------------------CCHHHHHHCCSEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc--CCC-----------------------------CCCcCCcccceEEEEEEEECC
Confidence 4569999999999999999999842 111 111224455555555666666
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCC
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~~~ivviNK~D~~~ 217 (496)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+... ++| +++|+||+|+..
T Consensus 80 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLTT 152 (199)
T ss_dssp EEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---H---HHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC-
T ss_pred EEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhccCCCC-EEEEEECccCCc
Confidence 679999999999998878888899999999999987531 0 0112222223322 556 899999999842
Q ss_pred CC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 218 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 218 ~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.. ... .+...+.+.. .++++++||++|.|++++
T Consensus 153 ~~~v~~-------~~~~~~~~~~------~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 153 KKVVDY-------TTAKEFADSL------GIPFLETSAKNATNVEQS 186 (199)
T ss_dssp -CCCCS-------CC-CHHHHTT------TCCBCCCCC---HHHHHH
T ss_pred cccCCH-------HHHHHHHHHc------CCeEEEEECCCCCCHHHH
Confidence 21 011 1122233333 356899999999999985
No 155
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.65 E-value=1.2e-15 Score=138.53 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=94.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe-
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 140 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~- 140 (496)
....++|+++|++|+|||||+++|+... ... ...+.+..+. ...+..
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~-~~~~~~~ 51 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDC--FPE-----------------------------NYVPTVFENY-TASFEID 51 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSC--CCS-----------------------------SCCCCSEEEE-EEEEECS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCC--CCC-----------------------------CCCCccceeE-EEEEEEC
Confidence 3456899999999999999999996321 100 0001111111 112333
Q ss_pred -CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEeeccCC
Q 010985 141 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDH 216 (496)
Q Consensus 141 -~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t-~e~~~~~~~--~~~~~~ivviNK~D~~ 216 (496)
....+.|+||||+.+|.......+..+|++|+|+|++.... +. .. ...+..+.. .+.| +++|.||+|+.
T Consensus 52 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 124 (184)
T 1m7b_A 52 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 124 (184)
T ss_dssp SCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEEcchhh
Confidence 34678999999999987777777889999999999987521 00 11 111122222 2566 89999999984
Q ss_pred CCCccHHHHHHH---------HHHHHHHHHhcCCCccCCeeEEeeccc-ccccccccc
Q 010985 217 TVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRV 264 (496)
Q Consensus 217 ~~~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~~~ipiSa~-~g~gi~~l~ 264 (496)
.. .....++ .++...+.+..+ ..+++++||+ +|.|++++.
T Consensus 125 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~gi~~l~ 174 (184)
T 1m7b_A 125 TD---VSTLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIF 174 (184)
T ss_dssp GC---HHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECBTTTBHHHHHHHH
T ss_pred cc---hhhHhhhhhcccCCCCHHHHHHHHHHcC-----CcEEEEeeecCCCcCHHHHH
Confidence 21 1111111 122334444443 2479999999 699999864
No 156
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.64 E-value=1.8e-15 Score=141.32 Aligned_cols=150 Identities=22% Similarity=0.263 Sum_probs=95.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
+..+|+++|.+++|||||+++++. +..... ..+.+..+.....+...+
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~--~~f~~~-----------------------------~~~Tig~d~~~k~~~~~~~ 60 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMY--DSFDNT-----------------------------YQATIGIDFLSKTMYLEDR 60 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH--SCCC---------------------------------------CEEEEEECSSC
T ss_pred CcEEEEEECcCCcCHHHHHHHHHh--CCCCCC-----------------------------cCCccceEEEEEEEEecce
Confidence 457999999999999999999852 222111 112222333333344444
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||+++|........+.+|++++|+|.+.... |+ .....+..+.. -++| +|+|.||+|+...
T Consensus 61 ~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~S---f~---~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~ 133 (216)
T 4dkx_A 61 TIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNS---FQ---QTTKWIDDVRTERGSDVI-IMLVGNKTDLADK 133 (216)
T ss_dssp EEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTTSSE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHH---HH---HHHHHHHHHHHhcCCCCe-EEEEeeccchHhc
Confidence 568899999999998888788899999999999987532 11 12222222222 3466 8999999998421
Q ss_pred -CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 -NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 -~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..+.+ +...+.+..+ ++++.+||++|.|++++.
T Consensus 134 r~V~~~-------e~~~~a~~~~------~~~~e~SAktg~nV~e~F 167 (216)
T 4dkx_A 134 RQVSIE-------EGERKAKELN------VMFIETSAKAGYNVKQLF 167 (216)
T ss_dssp CCSCHH-------HHHHHHHHHT------CEEEEEBTTTTBSHHHHH
T ss_pred CcccHH-------HHhhHHHHhC------CeeEEEeCCCCcCHHHHH
Confidence 12222 2233444443 579999999999999864
No 157
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.63 E-value=2.1e-15 Score=135.75 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=88.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|.+|+|||||+++|+... ... .....|.+ ....+..++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~--~~~----------------------------~~~t~~~~---~~~~~~~~~ 51 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGS--YQV----------------------------LEKTESEQ---YKKEMLVDG 51 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSC--CCC----------------------------CSSCSSSE---EEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--CCC----------------------------cCCCccee---EEEEEEECC
Confidence 456899999999999999999996321 110 00001111 122333444
Q ss_pred --eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc------CCceEEEEEeecc
Q 010985 143 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVTKLLLVVNKMD 214 (496)
Q Consensus 143 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~------~~~~~ivviNK~D 214 (496)
..+.|+||||++++ ..++.+|++|+|+|++.... + ......+..+..+ ++| +++|.||+|
T Consensus 52 ~~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~D 119 (178)
T 2iwr_A 52 QTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENS---F---QAVSRLHGQLSSLRGEGRGGLA-LALVGTQDR 119 (178)
T ss_dssp EEEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHCSSSCCCE-EEEEEECTT
T ss_pred EEEEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 56889999999872 34567999999999987521 0 0111111122222 456 899999999
Q ss_pred CCCC---CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 215 DHTV---NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 215 ~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+... ..+.+. +..+.+..+ ..+++++||++|.|++++.+
T Consensus 120 l~~~~~~~v~~~~-------~~~~~~~~~-----~~~~~~~Sa~~~~~i~~lf~ 161 (178)
T 2iwr_A 120 ISASSPRVVGDAR-------ARALXADMK-----RCSYYETXATYGLNVDRVFQ 161 (178)
T ss_dssp CBTTBCCCSCHHH-------HHHHHHHHS-----SEEEEEEBTTTTBTHHHHHH
T ss_pred ccccccCcCCHHH-------HHHHHHhhc-----CCeEEEEeccccCCHHHHHH
Confidence 8311 112222 222333321 36899999999999998643
No 158
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=137.65 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=89.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|.+|+|||||+++|+... .... ...++.+.....+..+
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~ 65 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKR--FISE------------------------------YDPNLEDTYSSEETVD 65 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSS--CCSC------------------------------CCTTCCEEEEEEEEET
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCC--CCcc------------------------------cCCCccceeeEEEEEC
Confidence 4556999999999999999999996321 1100 0111111111222333
Q ss_pred --CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEeec
Q 010985 142 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKM 213 (496)
Q Consensus 142 --~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~------~~~~~~ivviNK~ 213 (496)
...+.|+||||+++|.. +...+..+|++|+|+|++.... ++ .....+..+.. .++| +++|.||+
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~ 137 (187)
T 3c5c_A 66 HQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQS---FD---SSSSYLELLALHAKETQRSIP-ALLLGNKL 137 (187)
T ss_dssp TEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHHHHCCCCC-EEEEEECG
T ss_pred CEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhhccCCCCC-EEEEEECc
Confidence 46788999999988754 2456788999999999986421 10 11222222222 3677 89999999
Q ss_pred cCCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecc-cccccccccc
Q 010985 214 DDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG-LMGLNMKTRV 264 (496)
Q Consensus 214 D~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa-~~g~gi~~l~ 264 (496)
|+... ..+.+ +...+.+..+ ++++.+|| ++|.|++++.
T Consensus 138 Dl~~~~~v~~~-------~~~~~~~~~~------~~~~e~Sa~~~g~gv~~lf 177 (187)
T 3c5c_A 138 DMAQYRQVTKA-------EGVALAGRFG------CLFFEVSACLDFEHVQHVF 177 (187)
T ss_dssp GGGGGCSSCHH-------HHHHHHHHHT------CEEEECCSSSCSHHHHHHH
T ss_pred chhhcCccCHH-------HHHHHHHHcC------CcEEEEeecCccccHHHHH
Confidence 98421 11222 2233334443 47999999 8999999864
No 159
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.43 E-value=2.1e-17 Score=152.84 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=96.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe--
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 140 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-- 140 (496)
++.++|+++|.+|+|||||+++|+.. ..... ...++.+.....+..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~ 75 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN--AFPGE------------------------------YIPTVFDNYSANVMVDG 75 (204)
Confidence 46799999999999999999999521 11100 011222222222222
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 217 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~~--~~~~~ivviNK~D~~~ 217 (496)
....+.|+||||+.+|.......+..+|++|+|+|++.+... .... ..+..+... ++| +++|+||+|+..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~------~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~ 148 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF------ENVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 148 (204)
Confidence 335677999999999988888888899999999999876321 0111 222223222 567 899999999943
Q ss_pred CCccHHHHH------HHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 218 VNWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~~~~~~~~~------~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.....+.+. ....+...+.+..++ .+++++||++|.|++++.+
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~ 197 (204)
T 3th5_A 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 197 (204)
Confidence 211111110 011222223333321 2789999999999998644
No 160
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=138.21 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=94.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
.....++|+++|.+|+|||||+++|....... ...++++.+.....+..
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 67 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDS-------------------------------AHEPENPEDTYERRIMV 67 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCG-------------------------------GGTTTSCTTEEEEEEEE
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCc-------------------------------cCCCCcccceEEEEEEE
Confidence 34457999999999999999999984221111 01133333433344445
Q ss_pred CC--eEEEEEeCCCCcccHhHH-hhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeec
Q 010985 141 ET--TRFTILDAPGHKSYVPNM-ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~--~~i~liDtpG~~~~~~~~-~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~ 213 (496)
++ ..+.|+||||+..+...+ ...+..+|++|+|+|++.... +. ...+.+..+.. .++| +|+|.||+
T Consensus 68 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~ 140 (195)
T 3cbq_A 68 DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLP-VILVGNKS 140 (195)
T ss_dssp TTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCC-EEEEEECT
T ss_pred CCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeech
Confidence 54 467788999998875423 334678999999999986421 10 12222222322 2567 89999999
Q ss_pred cCCCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 214 DDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 214 D~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+... ..+.+ +...+.+..+ ++++++||++|.|++++.+
T Consensus 141 Dl~~~~~v~~~-------~~~~~a~~~~------~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 141 DLARSREVSLE-------EGRHLAGTLS------CKHIETSAALHHNTRELFE 180 (195)
T ss_dssp TCTTTCCSCHH-------HHHHHHHHTT------CEEEEEBTTTTBSHHHHHH
T ss_pred hccccCCcCHH-------HHHHHHHHhC------CEEEEEcCCCCCCHHHHHH
Confidence 99432 12222 2222333332 4799999999999998643
No 161
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.62 E-value=2.2e-15 Score=149.71 Aligned_cols=159 Identities=17% Similarity=0.119 Sum_probs=101.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.+..++|+++|.+|+|||||+++|+.. .+.. ...+++.+.....+..+
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~ 199 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTN--AFPG------------------------------EYIPTVFDNYSANVMVD 199 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHS--CCCC------------------------------SCCCCSEEEEEEEEEET
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhC--CCCc------------------------------ccCCcccceeEEEEEEC
Confidence 455699999999999999999999521 1111 01334444444445555
Q ss_pred CeE--EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCC
Q 010985 142 TTR--FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 216 (496)
Q Consensus 142 ~~~--i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~~--~~~~~ivviNK~D~~ 216 (496)
+.. +.|+||||+++|.......+..+|++++|+|++.+... .... ..+..+... ++| +++|+||+|+.
T Consensus 200 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 272 (332)
T 2wkq_A 200 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF------HHVRAKWYPEVRHHCPNTP-IILVGTKLDLR 272 (332)
T ss_dssp TEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHH------HHHHHTHHHHHHHHCTTSC-EEEEEECHHHH
T ss_pred CEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHH------HHHHHHHHHHHHhhCCCCc-EEEEEEchhcc
Confidence 554 55999999999988888888999999999999875310 0111 122333333 667 89999999984
Q ss_pred CCCccHHHHHH------HHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 217 TVNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 217 ~~~~~~~~~~~------i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
......+.+.+ ...+...+.+..++ .+++++||++|.|++++.
T Consensus 273 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 321 (332)
T 2wkq_A 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVF 321 (332)
T ss_dssp TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred cccchhhhccccccccccHHHHHHHHHHcCC-----cEEEEecCCCCcCHHHHH
Confidence 22100011100 01233344444432 379999999999999854
No 162
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.62 E-value=9.2e-16 Score=139.51 Aligned_cols=155 Identities=21% Similarity=0.294 Sum_probs=91.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
++|+++|++|+|||||+++|+... . .....+|+|.+.....+ . .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~~~t~~~~~~~~--~--~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--V-----------------------------RRGKRPGVTRKIIEIEW--K--NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--C-----------------------------SSSSSTTCTTSCEEEEE--T--TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--C-----------------------------ccCCCCCccceeEEEec--C--CE
Confidence 689999999999999999996321 1 11122456555443333 2 78
Q ss_pred EEEeCCCC-----------cccHhH---Hhhc-cccCCEEEEEEeCCCCccc-ccc---CCCCchHHHHHHHHHcCCceE
Q 010985 146 TILDAPGH-----------KSYVPN---MISG-ASQADIGVLVISARKGEFE-TGF---EKGGQTREHVMLAKTLGVTKL 206 (496)
Q Consensus 146 ~liDtpG~-----------~~~~~~---~~~~-~~~aD~~ilVvda~~g~~e-~~~---~~~~~t~e~~~~~~~~~~~~~ 206 (496)
.|+||||+ +.|... .... +..+++++.|+|+.....- ..+ ....+..+.+..+...++| +
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-i 125 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-T 125 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-E
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-e
Confidence 99999994 334222 2333 5667888888887642100 000 0001223344555556788 8
Q ss_pred EEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCc-cCCeeEEeeccccccccccccc
Q 010985 207 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 207 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~-~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
++|+||+|+... .. ..+..+.+.+++.. ....+++++||++|.|++++.+
T Consensus 126 ilv~nK~Dl~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 176 (190)
T 2cxx_A 126 IVAVNKLDKIKN--VQ-------EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKN 176 (190)
T ss_dssp EEEEECGGGCSC--HH-------HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHH
T ss_pred EEEeehHhccCc--HH-------HHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHH
Confidence 999999998432 11 12233333444320 0013589999999999998643
No 163
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.62 E-value=6e-15 Score=134.15 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=93.3
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 60 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 60 ~~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
....+.++|+++|.+|+|||||+++|+.. ..... ...|.+.....+.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~--~~~~~-------------------------------~~~t~~~~~~~~~ 61 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTG--TYVQE-------------------------------ESPEGGRFKKEIV 61 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHS--SCCCC-------------------------------CCTTCEEEEEEEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcC--CCCCC-------------------------------cCCCcceEEEEEE
Confidence 34566799999999999999999999632 11100 0011111123444
Q ss_pred eCC--eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeec
Q 010985 140 TET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKM 213 (496)
Q Consensus 140 ~~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~ 213 (496)
.++ ..+.|+||||+++|. .++.+|++++|+|++.... + ......+..+.. .++| +++|.||+
T Consensus 62 ~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 129 (184)
T 3ihw_A 62 VDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEIS---F---QTVYNYFLRLCSFRNASEVP-MVLVGTQD 129 (184)
T ss_dssp ETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHTTSCGGGSC-EEEEEECT
T ss_pred ECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 555 567789999998876 4567999999999987531 0 011222223332 2456 89999999
Q ss_pred cCCCC---CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 214 DDHTV---NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 214 D~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+... ..+. ++...+.+..+ ..+++.+||++|.|++++.+
T Consensus 130 Dl~~~~~~~v~~-------~~~~~~~~~~~-----~~~~~e~Sa~~~~gv~~lf~ 172 (184)
T 3ihw_A 130 AISAANPRVIDD-------SRARKLSTDLK-----RCTYYETCATYGLNVERVFQ 172 (184)
T ss_dssp TCBTTBCCCSCH-------HHHHHHHHHTT-----TCEEEEEBTTTTBTHHHHHH
T ss_pred ccccccccccCH-------HHHHHHHHHcC-----CCeEEEecCCCCCCHHHHHH
Confidence 98321 1222 22333444443 25799999999999998643
No 164
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.61 E-value=3.9e-15 Score=137.91 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=95.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC-
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 141 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~- 141 (496)
...++|+++|.+|+|||||+++|+... ... ...+.+..+. ...+..+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~--~~~-----------------------------~~~~t~~~~~-~~~~~~~~ 73 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDC--FPE-----------------------------NYVPTVFENY-TASFEIDT 73 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSC--CCS-----------------------------SCCCCSEEEE-EEEEESSS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CCC-----------------------------CcCCccceeE-EEEEEECC
Confidence 346899999999999999999996321 100 0001111111 1223333
Q ss_pred -CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEeeccCCC
Q 010985 142 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 142 -~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t-~e~~~~~~~--~~~~~~ivviNK~D~~~ 217 (496)
...+.|+||||+.+|.......+..+|++|+|+|++.... +. .. ...+..+.. .++| +++|.||+|+..
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 146 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRT 146 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEechhhcc
Confidence 4679999999999987777777889999999999987521 00 11 111222332 2556 899999999842
Q ss_pred CCccHHHHHHH---------HHHHHHHHHhcCCCccCCeeEEeeccc-ccccccccc
Q 010985 218 VNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRV 264 (496)
Q Consensus 218 ~~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~~~ipiSa~-~g~gi~~l~ 264 (496)
. .....++ .++...+.+.++ ..+++++||+ +|.|++++.
T Consensus 147 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~gv~~lf 195 (205)
T 1gwn_A 147 D---VSTLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIF 195 (205)
T ss_dssp C---HHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECCTTTCHHHHHHHH
T ss_pred c---hhhhhhhcccccCCCCHHHHHHHHHHcC-----CCEEEEeeeccCCcCHHHHH
Confidence 1 1111110 122334444443 2479999999 689999864
No 165
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.61 E-value=3.6e-15 Score=141.57 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=92.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+|+|+..... . ......++|.+.....+.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~-~----------------------------~~~~~~~~t~~~~~~~~~~~ 76 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVF-H----------------------------SGTAAKSITKKCEKRSSSWK 76 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCS-C----------------------------C-------CCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcC-c----------------------------cCCCCCceeeeEEEEEEEeC
Confidence 345799999999999999999999632211 0 00111367777777788889
Q ss_pred CeEEEEEeCCCCcc-----------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-----HcCCce
Q 010985 142 TTRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----TLGVTK 205 (496)
Q Consensus 142 ~~~i~liDtpG~~~-----------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-----~~~~~~ 205 (496)
+..+.|+||||+.+ +.+.+......+|++|+|+|++... ....+.+..+. ....|
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~l~~~~~~~~~~~~~~- 147 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT--------EEEHKATEKILKMFGERARSF- 147 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS--------SHHHHHHHHHHHHHHHHHGGG-
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC--------HHHHHHHHHHHHHhhhhccce-
Confidence 99999999999543 3444444556789999999987531 23333333332 12345
Q ss_pred EEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccc-----ccccccc
Q 010985 206 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM-----GLNMKTR 263 (496)
Q Consensus 206 ~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~-----g~gi~~l 263 (496)
+++|+||+|+.....-.+.+....+.+..+++.++. .++++++.. +.++.++
T Consensus 148 ~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~------~~~~~~~~~~~~~~~~~v~~l 204 (239)
T 3lxx_A 148 MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD------RYCALNNKATGAEQEAQRAQL 204 (239)
T ss_dssp EEEEEECGGGC------------CHHHHHHHHHHSS------SEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC------EEEEEECCCCccccHHHHHHH
Confidence 889999999843221111122222356666776653 355565543 3456553
No 166
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.60 E-value=3.9e-16 Score=155.52 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=96.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-e
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 143 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-~ 143 (496)
..+|+++|.+|||||||+++|+..... ....+.+|.+.....+.+.+ .
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~-------------------------------i~~~~ftTl~p~~g~v~~~~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPK-------------------------------IADYHFTTLVPNLGMVETDDGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCE-------------------------------ESSTTSSCCCCCEEEEECSSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCc-------------------------------cccCCccccCceEEEEEeCCCc
Confidence 357999999999999999998422110 01124567666666677765 8
Q ss_pred EEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-----CCceEEEEEe
Q 010985 144 RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVN 211 (496)
Q Consensus 144 ~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-----~~~~~ivviN 211 (496)
.+.|+||||+.+ +....++.+..+|++|+|+|++.......+ ......+..+..+ +.| +++|+|
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~---~~~~~~~~eL~~~~~~l~~~p-~ilV~N 282 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY---DDYLTINQELSEYNLRLTERP-QIIVAN 282 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH---HHHHHHHHHHHHSCSSTTTSC-BCBEEE
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH---HHHHHHHHHHHHhhhhhcCCC-EEEEEE
Confidence 899999999533 345556667789999999999762100000 1122233344442 566 789999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+|+... .+.. ..+.+.+.. ..+++++||+++.|++++..
T Consensus 283 K~Dl~~~---~e~~-------~~l~~~l~~----~~~v~~iSA~tg~gi~eL~~ 322 (342)
T 1lnz_A 283 KMDMPEA---AENL-------EAFKEKLTD----DYPVFPISAVTREGLRELLF 322 (342)
T ss_dssp CTTSTTH---HHHH-------HHHHHHCCS----CCCBCCCSSCCSSTTHHHHH
T ss_pred CccCCCC---HHHH-------HHHHHHhhc----CCCEEEEECCCCcCHHHHHH
Confidence 9998321 1112 222222221 14789999999999998654
No 167
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.60 E-value=8.4e-15 Score=141.73 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=79.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+|+|+...-.. .....|+|.+.....+...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~ 86 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS------------------------------ISPFQSEGPRPVMVSRSRAG 86 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC------------------------------CCSSSCCCSSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCcceeeEEEEEeeCC
Confidence 457999999999999999999997322111 11125666666667778889
Q ss_pred eEEEEEeCCCCcccH---hHHh----hc--cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-cC----CceEEE
Q 010985 143 TRFTILDAPGHKSYV---PNMI----SG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG----VTKLLL 208 (496)
Q Consensus 143 ~~i~liDtpG~~~~~---~~~~----~~--~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~~----~~~~iv 208 (496)
..++|+||||+.++. .... .. ...+|++|+|+|.+...+ .....+.+..+.. .+ .| +++
T Consensus 87 ~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~------~~~~~~~~~~l~~~~~~~~~~~-iiv 159 (270)
T 1h65_A 87 FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV------DNLDKLVAKAITDSFGKGIWNK-AIV 159 (270)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC------CHHHHHHHHHHHHHHCGGGGGG-EEE
T ss_pred eEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC------CHHHHHHHHHHHHHhCcccccC-EEE
Confidence 999999999997762 1111 11 237999999998865322 1223344444433 24 35 899
Q ss_pred EEeeccCC
Q 010985 209 VVNKMDDH 216 (496)
Q Consensus 209 viNK~D~~ 216 (496)
|+||+|+.
T Consensus 160 V~nK~Dl~ 167 (270)
T 1h65_A 160 ALTHAQFS 167 (270)
T ss_dssp EEECCSCC
T ss_pred EEECcccC
Confidence 99999984
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.59 E-value=8.2e-15 Score=147.58 Aligned_cols=153 Identities=21% Similarity=0.270 Sum_probs=98.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
....+|+++|.+|+|||||+|+|+.... .....+++|.+.....+...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-------------------------------EIASYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-------------------------------EEECCTTCSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCCeeeceeEEEEEecC
Confidence 4678999999999999999999952110 011124566666666667778
Q ss_pred eEEEEEeCCCCcccH--------hHHhhcc-ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH-c-CCceEEEEEe
Q 010985 143 TRFTILDAPGHKSYV--------PNMISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L-GVTKLLLVVN 211 (496)
Q Consensus 143 ~~i~liDtpG~~~~~--------~~~~~~~-~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~-~-~~~~~ivviN 211 (496)
..+.++||||+.++. .....++ ..+|.+|+|+|++.+. +++.. ...+.+..+.. . +.| +|+|+|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~~-~~~~~~~~i~~~~~~~p-iilV~N 288 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPLE-EQIHLFEEVHGEFKDLP-FLVVIN 288 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCHH-HHHHHHHHHHHHTTTSC-EEEEEC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCHH-HHHHHHHHHHHhcCCCC-EEEEEE
Confidence 899999999986541 1222233 4699999999987642 01100 11222222322 3 677 899999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+|+.. ...++ ++..+++.. ..+++++||++|+|++++.+
T Consensus 289 K~Dl~~----~~~~~----~~~~~~~~~------~~~~~~iSA~~g~gi~~l~~ 328 (357)
T 2e87_A 289 KIDVAD----EENIK----RLEKFVKEK------GLNPIKISALKGTGIDLVKE 328 (357)
T ss_dssp CTTTCC----HHHHH----HHHHHHHHT------TCCCEECBTTTTBTHHHHHH
T ss_pred CcccCC----hHHHH----HHHHHHHhc------CCCeEEEeCCCCcCHHHHHH
Confidence 999832 22222 233333333 35789999999999998654
No 169
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=1e-14 Score=135.76 Aligned_cols=153 Identities=19% Similarity=0.144 Sum_probs=90.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|.+|+|||||+++|+.....+.... +.++.+.....+..++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~------------------------------~~~g~d~~~~~i~~~~ 84 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC------------------------------EVLGEDTYERTLMVDG 84 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---------------------------------CCTTEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC------------------------------CccceeeEEEEEEECC
Confidence 4568999999999999999999963222211100 1122222223344555
Q ss_pred e--EEEEEeCCCCcccHhH-HhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccC
Q 010985 143 T--RFTILDAPGHKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 215 (496)
Q Consensus 143 ~--~i~liDtpG~~~~~~~-~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~ 215 (496)
. .+.++||+|....... .....+.+|++|+|+|.+.... |+ ...+.+..+.. .++| +|+|.||+|+
T Consensus 85 ~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~s---f~---~~~~~~~~l~~~~~~~~~p-iilVgNK~DL 157 (211)
T 2g3y_A 85 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSDL 157 (211)
T ss_dssp EEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHH---HH---HHHHHHHHHHTSGGGTTSC-EEEEEECTTC
T ss_pred eeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCc-EEEEEEChHH
Confidence 4 5678999998763222 2233567999999999886421 00 11122222222 2567 8999999998
Q ss_pred CCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... ....+ +...+.... .++++++||++|.|++++.+
T Consensus 158 ~~~r~v~~~-------e~~~~a~~~------~~~~~e~SAk~g~~v~elf~ 195 (211)
T 2g3y_A 158 VRCREVSVS-------EGRACAVVF------DCKFIETSAAVQHNVKELFE 195 (211)
T ss_dssp GGGCCSCHH-------HHHHHHHHH------TCEEEECBTTTTBSHHHHHH
T ss_pred hcCceEeHH-------HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 421 11111 111222222 35799999999999998644
No 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=4.3e-15 Score=138.60 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=84.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|++|+|||||+++|+...-... .....++++.+. .
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~----------------------------~~~~~~~~~~~~-------~ 53 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----------------------------VVSQEPLSAADY-------D 53 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB----------------------------CCCSSCEEETTG-------G
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCe----------------------------eeecCceEEEEe-------e
Confidence 34568999999999999999999963221000 000012222221 5
Q ss_pred CeEEEEEeCCCCcccHhHHhhcccc----CCEEEEEEeCC-CCccccccCCCCchHHHHHHH-HH------cCCceEEEE
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQ----ADIGVLVISAR-KGEFETGFEKGGQTREHVMLA-KT------LGVTKLLLV 209 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~----aD~~ilVvda~-~g~~e~~~~~~~~t~e~~~~~-~~------~~~~~~ivv 209 (496)
...+.|+||||+.+|...+...+.. +|++|+|+|++ .... + ....+.+..+ .. .++| +++|
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv 126 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK---L---TTTAEFLVDILSITESSCENGID-ILIA 126 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTC---C---HHHHHHHHHHHHHHHHHSTTCCC-EEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHH---H---HHHHHHHHHHHhcccccccCCCC-EEEE
Confidence 6789999999999987666666555 89999999998 3210 1 1222222222 11 3677 8999
Q ss_pred EeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccc
Q 010985 210 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNM 260 (496)
Q Consensus 210 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi 260 (496)
+||+|+.......+..+.+.+++..+.... ..+++++||++|.+-
T Consensus 127 ~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 127 CNKSELFTARPPSKIKDALESEIQKVIERR------KKSLNEVERKINEED 171 (218)
T ss_dssp EECTTSTTCCCHHHHHHHHHHHHHHHHHHH------HHHHHC---------
T ss_pred EEchHhcccCCHHHHHHHHHHHHHHHHHHH------hcccccccccccccc
Confidence 999999544322222333334444444332 246889999998864
No 171
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.57 E-value=1.7e-14 Score=132.14 Aligned_cols=153 Identities=19% Similarity=0.137 Sum_probs=88.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|.+|+|||||+++|+.....+.... ..++.+.....+..++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 53 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX------------------------------EVLGEDTYERTLMVDG 53 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----------------------------------GGGCTTEEEEEEEETT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc------------------------------cccceeEEEEEEEECC
Confidence 3468999999999999999999975433322111 1122232233344555
Q ss_pred e--EEEEEeCCCCcccHh-HHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccC
Q 010985 143 T--RFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 215 (496)
Q Consensus 143 ~--~i~liDtpG~~~~~~-~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivviNK~D~ 215 (496)
. .+.++||+|...... ......+.+|++++|+|.+.... |+ ...+.+..+.. .++| +|+|.||+|+
T Consensus 54 ~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 126 (192)
T 2cjw_A 54 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSDL 126 (192)
T ss_dssp EEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTTSCCC-EEEEEECTTC
T ss_pred eEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCe-EEEEEechhh
Confidence 4 567899999755211 11223457899999999986421 10 11222222322 2567 8999999998
Q ss_pred CCC-CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
... ....+ +...+.... ..+++++||++|.|++++.+
T Consensus 127 ~~~r~v~~~-------~~~~~a~~~------~~~~~e~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 127 VRXREVSVS-------EGRAXAVVF------DXKFIETSAAVQHNVKELFE 164 (192)
T ss_dssp GGGCCSCHH-------HHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred hccccccHH-------HHHHHHHHh------CCceEEeccccCCCHHHHHH
Confidence 421 11111 111122222 35799999999999998644
No 172
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.57 E-value=7.5e-15 Score=141.41 Aligned_cols=118 Identities=15% Similarity=0.093 Sum_probs=80.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
.+.++|+++|++|+|||||+|+|++...... ...+++|.+.....+.+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~ 83 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV------------------------------SPFQAEGLRPVMVSRTMGG 83 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC------------------------------CSSCC-CCCCEEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc------------------------------CCCCCcceeeEEEEEEECC
Confidence 4579999999999999999999974332111 1126677777778888899
Q ss_pred eEEEEEeCCCCcccH-------hHHhhcc--ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-C---CceEEEE
Q 010985 143 TRFTILDAPGHKSYV-------PNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G---VTKLLLV 209 (496)
Q Consensus 143 ~~i~liDtpG~~~~~-------~~~~~~~--~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-~---~~~~ivv 209 (496)
..++|+||||+.+|. +...+.+ ..+|++|+|+|.+...+. ....+.+..+... + ..++++|
T Consensus 84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~------~~~~~~~~~l~~~~~~~~~~~~ivv 157 (262)
T 3def_A 84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVD------ELDKQVVIAITQTFGKEIWCKTLLV 157 (262)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCC------HHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCC------HHHHHHHHHHHHHhchhhhcCEEEE
Confidence 999999999998762 1111111 378999999988764221 1223344444432 3 1238999
Q ss_pred EeeccCC
Q 010985 210 VNKMDDH 216 (496)
Q Consensus 210 iNK~D~~ 216 (496)
+||+|+.
T Consensus 158 ~nK~Dl~ 164 (262)
T 3def_A 158 LTHAQFS 164 (262)
T ss_dssp EECTTCC
T ss_pred EeCcccC
Confidence 9999984
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.57 E-value=5.8e-15 Score=144.76 Aligned_cols=107 Identities=12% Similarity=0.018 Sum_probs=64.8
Q ss_pred CeEEEEEeCCCCcc-------------cHhHHhhccccCCEEE-EEEeCCCCccccccCCCCchH-HHHHHHHHcCCceE
Q 010985 142 TTRFTILDAPGHKS-------------YVPNMISGASQADIGV-LVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 206 (496)
Q Consensus 142 ~~~i~liDtpG~~~-------------~~~~~~~~~~~aD~~i-lVvda~~g~~e~~~~~~~~t~-e~~~~~~~~~~~~~ 206 (496)
...++|+||||+.+ +...+...+..+|.+| +|+|++.+.. .+.. ..+..+...+.| +
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~~~~~~~~~~~~-~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR-T 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------GCHHHHHHHHHCTTCSS-E
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------hhHHHHHHHHhCCCCCe-E
Confidence 47899999999642 3344455667787666 6999987632 2332 334444445677 8
Q ss_pred EEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 207 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 207 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
++|+||+|+..... . ..+.+...+..+.. ...+++++||++|.|++++.+
T Consensus 196 i~V~NK~Dl~~~~~--~----~~~~~~~~~~~~~~---~~~~v~~~SA~~~~gi~~l~~ 245 (299)
T 2aka_B 196 IGVITKLDLMDEGT--D----ARDVLENKLLPLRR---GYIGVVNRSQKDIDGKKDITA 245 (299)
T ss_dssp EEEEECGGGSCTTC--C----CHHHHTTCSSCCTT---CEEECCCCCCBCTTSCBCHHH
T ss_pred EEEEEccccCCCCc--h----HHHHHhCCcCcCCC---CcEEEECCChhhccccccHHH
Confidence 99999999943221 0 11111111111100 124789999999999998643
No 174
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.57 E-value=4.7e-15 Score=134.70 Aligned_cols=160 Identities=11% Similarity=0.138 Sum_probs=89.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe----
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---- 140 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~---- 140 (496)
.++|+++|.+|+|||||+++|+....... .+..+.+.++.....+..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~-----------------------------~~~~~t~g~~~~~~~~~~~~~~ 52 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDL-----------------------------GMQSATVGIDVKDWPIQIRDKR 52 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC----------------------------------------CSEEEEEEEC------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccC-----------------------------CCcceeccEEeEEeeeccccCC
Confidence 37899999999999999999953111100 000111223332222222
Q ss_pred -CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCC
Q 010985 141 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 141 -~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~--~~~~~~ivviNK~D~~~ 217 (496)
....+.++||||+++|.......++.+|++++|+|.+.+.. .+ ......+..+.. .+.| +++|.||+|+..
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--s~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 126 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQA--EV---DAMKPWLFNIKARASSSP-VILVGTHLDVSD 126 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHH--HH---HTHHHHHHHHHHHCTTCE-EEEEEECGGGCC
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchh--HH---HHHHHHHHHHHhhCCCCc-EEEEEECCCccc
Confidence 35689999999998886655555678999999999987520 00 011222222222 2566 888999999832
Q ss_pred CCccHHHHHHH-HHHHHHHHHhcCCCccCCeeEEeecccccc-ccccccc
Q 010985 218 VNWSKERYDEI-ESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 265 (496)
Q Consensus 218 ~~~~~~~~~~i-~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~-gi~~l~~ 265 (496)
....... ......+.+..++. ...+++++||++|. |+.++.+
T Consensus 127 ----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~~~~~l~~ 170 (184)
T 2zej_A 127 ----EKQRKACMSKITKELLNKRGFP--AIRDYHFVNATEESDALAKLRK 170 (184)
T ss_dssp ----HHHHHHHHHHHHHHTTTCTTSC--EEEEEEECCTTSCCHHHHHHHH
T ss_pred ----chhhHHHHHHHHHHHHHhcCCc--chhheEEEecccCchhHHHHHH
Confidence 2222111 12222333333332 11248999999996 8887543
No 175
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.56 E-value=4.3e-15 Score=146.89 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=49.1
Q ss_pred CCeEEEEEeCCCCcc-------------cHhHHhhccccCCEEEEEEeC-CCCccccccCCCCch-HHHHHHHHHcCCce
Q 010985 141 ETTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISA-RKGEFETGFEKGGQT-REHVMLAKTLGVTK 205 (496)
Q Consensus 141 ~~~~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvda-~~g~~e~~~~~~~~t-~e~~~~~~~~~~~~ 205 (496)
.+..++|+||||+.+ +...+...+..+|++++|+|+ +.+.. .+. ...+..+...+.|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~-------~~~~~~i~~~~~~~~~~- 200 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA-------NSDALQLAKEVDPEGKR- 200 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST-------TCSHHHHHHHHCSSCSS-
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh-------hhHHHHHHHHhCCCCCc-
Confidence 457899999999764 455566678899999999997 44421 122 3445555556777
Q ss_pred EEEEEeeccCCC
Q 010985 206 LLLVVNKMDDHT 217 (496)
Q Consensus 206 ~ivviNK~D~~~ 217 (496)
+++|+||+|+..
T Consensus 201 ~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 201 TIGVITKLDLMD 212 (315)
T ss_dssp EEEEEECTTSSC
T ss_pred EEEEEcCcccCC
Confidence 889999999853
No 176
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.7e-15 Score=134.84 Aligned_cols=114 Identities=15% Similarity=0.177 Sum_probs=69.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 142 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~ 142 (496)
...++|+++|++|+|||||+++|+...-. . . .....++++.+. .+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~--~-~-------------------------~~~~~~~~~~~~-------~~ 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR--P-T-------------------------VVSQEPLSAADY-------DG 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------CC-------CC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC--c-c-------------------------cccCCCceeeee-------cC
Confidence 56789999999999999999999632210 0 0 000112233222 56
Q ss_pred eEEEEEeCCCCcccHhHHhhccc----cCCEEEEEEeCC-CCccccccCCCCchHHHHH-HHHH------cCCceEEEEE
Q 010985 143 TRFTILDAPGHKSYVPNMISGAS----QADIGVLVISAR-KGEFETGFEKGGQTREHVM-LAKT------LGVTKLLLVV 210 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~~~~~~~~----~aD~~ilVvda~-~g~~e~~~~~~~~t~e~~~-~~~~------~~~~~~ivvi 210 (496)
..+.|+||||+.+|...+...+. .+|++|+|+|++ .... + ....+.+. ++.. .++| +++|+
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~ 163 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK---L---TTTAEFLVDILSITESSCENGID-ILIAC 163 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHH---H---HHHHHHHHHHHHHHHHHSTTCCC-EEEEE
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchh---H---HHHHHHHHHHHhhhhhccccCCC-EEEEE
Confidence 78999999999887544444443 489999999998 3210 0 01112221 1111 2677 89999
Q ss_pred eeccCCCC
Q 010985 211 NKMDDHTV 218 (496)
Q Consensus 211 NK~D~~~~ 218 (496)
||+|+...
T Consensus 164 nK~Dl~~~ 171 (193)
T 2ged_A 164 NKSELFTA 171 (193)
T ss_dssp ECTTSTTC
T ss_pred EchHhcCC
Confidence 99999544
No 177
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.55 E-value=6.3e-15 Score=156.44 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=93.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeee------e
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG------R 135 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~------~ 135 (496)
....++|+++|.+|+|||||+++|+... .... .....|.+.... .
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~--~~~~---------------------------~~~t~g~~~~~~~~~~~~~ 88 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGET--FDPK---------------------------ESQTHGLNVVTKQAPNIKG 88 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------------CCCccceEEEEeccccccc
Confidence 4567999999999999999999996321 1000 000011111110 0
Q ss_pred EEE--EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEe
Q 010985 136 AHF--ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVN 211 (496)
Q Consensus 136 ~~~--~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~--~~~~ivviN 211 (496)
..+ ...+..+.++||||++.|.......++.+|++|+|+|++.. ......+..+...+ .| +|+|.|
T Consensus 89 v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---------~~~~~~~~~l~~~~~~~p-vilV~N 158 (535)
T 3dpu_A 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---------SNKHYWLRHIEKYGGKSP-VIVVMN 158 (535)
T ss_dssp GTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---------GGHHHHHHHHHHHSSSCC-EEEEEC
T ss_pred eeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---------hhHHHHHHHHHHhCCCCC-EEEEEE
Confidence 001 12358899999999998877666667889999999999864 24445555566554 77 889999
Q ss_pred eccCCCCC-ccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 212 KMDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 212 K~D~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+|+.... ... +++...+...+ .+++++||++|.|++++..
T Consensus 159 K~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~~vSA~~g~gi~eL~~ 200 (535)
T 3dpu_A 159 KIDENPSYNIEQ-------KKINERFPAIE------NRFHRISCKNGDGVESIAK 200 (535)
T ss_dssp CTTTCTTCCCCH-------HHHHHHCGGGT------TCEEECCC-----CTTHHH
T ss_pred CCCcccccccCH-------HHHHHHHHhcC------CceEEEecCcccCHHHHHH
Confidence 99985321 111 23333444443 4699999999999998654
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.55 E-value=3.4e-14 Score=131.60 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=94.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEe
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 140 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~ 140 (496)
...++.+|+++|++|||||||+++|+.... .. ......|+|..... +.+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~--~~---------------------------~~~~~~G~~~~~~~--~~~ 70 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKS--LA---------------------------RTSKTPGRTQLINL--FEV 70 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC------------------------------------------CCEEE--EEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCc--cc---------------------------cccCCCccceeeEE--EEe
Confidence 445678999999999999999999842110 00 00112566654433 233
Q ss_pred CCeEEEEEeCCCCcc----------c---HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 010985 141 ETTRFTILDAPGHKS----------Y---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 207 (496)
Q Consensus 141 ~~~~i~liDtpG~~~----------~---~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~i 207 (496)
.+ .+.++||||+.. | +.........+|.+++++|+..+.. ....+....+...++| ++
T Consensus 71 ~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~~ 141 (210)
T 1pui_A 71 AD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-------DLDQQMIEWAVDSNIA-VL 141 (210)
T ss_dssp ET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EE
T ss_pred cC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eE
Confidence 33 688999999843 1 1122223357899999999987631 1223344556667888 77
Q ss_pred EEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 208 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 208 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
++.||+|+. +....+.....+..++...+. ...++|+||+++.|+.++.
T Consensus 142 ~v~nK~D~~----s~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sal~~~~~~~l~ 190 (210)
T 1pui_A 142 VLLTKADKL----ASGARKAQLNMVREAVLAFNG----DVQVETFSSLKKQGVDKLR 190 (210)
T ss_dssp EEEECGGGS----CHHHHHHHHHHHHHHHGGGCS----CEEEEECBTTTTBSHHHHH
T ss_pred EEEecccCC----CchhHHHHHHHHHHHHHhcCC----CCceEEEeecCCCCHHHHH
Confidence 899999983 222222223445555554432 3578999999999999853
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.55 E-value=1.7e-14 Score=146.72 Aligned_cols=83 Identities=14% Similarity=0.098 Sum_probs=47.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE------
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE------ 139 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~------ 139 (496)
++|+++|++|+|||||+|+|+... ... ...+++|++.......
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~------------------------------~~~p~tT~~~~~g~~~~~~~~~ 49 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEI------------------------------ANYPFTTIEANVGVTYAITDHP 49 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------------------------------------CCEEEEEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-Ccc------------------------------cCCCCcccCCceEEEeeccCCc
Confidence 479999999999999999996432 111 1124556554433211
Q ss_pred ---------------eC---CeEEEEEeCCCCccc-------HhHHhhccccCCEEEEEEeCCCC
Q 010985 140 ---------------TE---TTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKG 179 (496)
Q Consensus 140 ---------------~~---~~~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g 179 (496)
+. ..++.|+||||+.+. ....+..++.+|++++|+|+..+
T Consensus 50 ~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 50 CKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp CSSSCCSCCCSSSCEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred hHHhhhhcccccccccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 12 357999999997542 23334567899999999999875
No 180
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.47 E-value=7.3e-14 Score=140.49 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=69.9
Q ss_pred EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 010985 139 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 139 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~ 218 (496)
+..++.+.|+||||...... ..+..+|++|+|+|+..+.....+. ...++.| .++|+||+|+.
T Consensus 168 ~~~~~~~iiiDTpGi~~~~~---~~~~~aD~vl~V~d~~~~~~~~~l~-----------~~~~~~p-~ivVlNK~Dl~-- 230 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQSEV---AVANMVDTFVLLTLARTGDQLQGIK-----------KGVLELA-DIVVVNKADGE-- 230 (355)
T ss_dssp HHTTCCEEEEEECSCSSHHH---HHHTTCSEEEEEEESSTTCTTTTCC-----------TTSGGGC-SEEEEECCCGG--
T ss_pred hhCCCCEEEEeCCCCCcHHH---HHHHhCCEEEEEECCCCCccHHHHH-----------HhHhhcC-CEEEEECCCCc--
Confidence 44678999999999655322 2347899999999987663211110 0012346 68899999983
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCc-cCCeeEEeeccccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~-~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
..........++...+...+... ....+++++||++|.|++++.+
T Consensus 231 --~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~ 276 (355)
T 3p32_A 231 --HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWD 276 (355)
T ss_dssp --GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHH
T ss_pred --ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHH
Confidence 23345555566666655442110 0135799999999999998654
No 181
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.46 E-value=1.1e-13 Score=138.48 Aligned_cols=107 Identities=16% Similarity=0.088 Sum_probs=67.0
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~ 219 (496)
+.++.++|+||||+.++.... ...+|++|+|+|+..+.. + +.... ...+.| .++|+||+|+..
T Consensus 146 ~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~---~----~~l~~----~~~~~p-~ivv~NK~Dl~~-- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDD---L----QGIKK----GLMEVA-DLIVINKDDGDN-- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC-------------CCCCH----HHHHHC-SEEEECCCCTTC--
T ss_pred ccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHH---H----HHHHH----hhhccc-CEEEEECCCCCC--
Confidence 568899999999988765443 478999999999976531 1 11111 112456 678999999832
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCC-ccCCeeEEeeccccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~~-~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
...+....+++...+..++.. .....+++++||++|.|++++.+
T Consensus 209 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~ 253 (341)
T 2p67_A 209 --HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWH 253 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHH
Confidence 233444445555555443210 00024789999999999998654
No 182
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.46 E-value=3.2e-13 Score=124.12 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=94.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 142 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~- 142 (496)
..++|+++|++|+|||||+++|+...-.. +..+.++.+.....+.+++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~i~~~g~ 52 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-------------------------------ESKSTIGVEFATRSIQVDGK 52 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------------------CCCSCEEEEEEEEETTE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------CCCCccceeEEEEEEEECCE
Confidence 35899999999999999999996321110 0012222333334455555
Q ss_pred -eEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC
Q 010985 143 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 143 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~ 218 (496)
..+.|+||||++.|..........+|++++|+|...... + ......+..+.. .+.| +++++||+|+...
T Consensus 53 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 53 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIV-IMLVGNKSDLRHL 125 (199)
T ss_dssp EEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 457789999998876555555678999999999886421 0 011222222222 2445 8899999998421
Q ss_pred -CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 219 -NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 219 -~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.... .+...+.... .+.++.+||+++.|+.++.+
T Consensus 126 ~~~~~-------~~a~~l~~~~------~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 126 RAVPT-------DEARAFAEKN------NLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp CCSCH-------HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred cCcCH-------HHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 1111 1223334433 35789999999999998654
No 183
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.45 E-value=6.3e-14 Score=140.44 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=60.3
Q ss_pred eCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 010985 140 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 219 (496)
Q Consensus 140 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~ 219 (496)
..++.+.|+||||....- ......+|++++|+|+..+.. .+.+.. ..+..| .++|+||+|+.
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~----------~~~i~~-~il~~~-~ivVlNK~Dl~--- 225 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE----------LQGIKR-GIIEMA-DLVAVTKSDGD--- 225 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSGG---
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh----------HHHhHH-HHHhcC-CEEEEeeecCC---
Confidence 467899999999965322 222468999999999987621 111111 124567 57899999983
Q ss_pred ccHHHHHHHHHHHHHHHHhcCC-CccCCeeEEeeccccccccccccc
Q 010985 220 WSKERYDEIESKMTPFLKASGY-NVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 220 ~~~~~~~~i~~~l~~~l~~~~~-~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
...........+...++.... ......+++++||++|.|++++.+
T Consensus 226 -~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~ 271 (349)
T 2www_A 226 -LIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWD 271 (349)
T ss_dssp -GHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHH
Confidence 222222233334333332110 000124789999999999998654
No 184
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.44 E-value=1.3e-13 Score=135.20 Aligned_cols=177 Identities=15% Similarity=0.180 Sum_probs=103.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEEE
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 146 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~ 146 (496)
+|+++|..++|||||++++.. +.... .....+.|+......+. ....+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~--~~~~~----------------------------~~~~~~~Tig~~~~~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH--NMQPL----------------------------DTLYLESTSNPSLEHFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS--CCCSG----------------------------GGTTCCCCCSCCCEEEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHHc--CCCCC----------------------------ccceecCeeeeeeEEEc-cEEEEE
Confidence 589999999999999987631 11100 00113455544444442 347899
Q ss_pred EEeCCCCcccHh---HHhhccccCCEEEEEEeCCCCccccccCCCCchHHH----HHHHHH--cCCceEEEEEeeccCCC
Q 010985 147 ILDAPGHKSYVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREH----VMLAKT--LGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 147 liDtpG~~~~~~---~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~----~~~~~~--~~~~~~ivviNK~D~~~ 217 (496)
||||||+++|.. ......+.++++|+|+|++.. +. ...+. +..+.. -++| ++++.||+|+..
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~-------~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~ 120 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YI-------NAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLS 120 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TT-------HHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSC
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HH-------HHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCc
Confidence 999999999953 234557899999999999876 32 22222 222222 2567 889999999942
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCC-ChhhHHHHHhccC
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWW-NGPCLFEALDRIE 285 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~-~g~~L~~~l~~l~ 285 (496)
.+...+..+++..+..+.+...++. ..+++|+.+||++ .|+.+........+. ..++|.+.|+.+-
T Consensus 121 ~~~R~~~~R~V~~~~~~~la~~~~~-~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~~~ 187 (331)
T 3r7w_B 121 EDFKVDAQRDIMQRTGEELLELGLD-GVQVSFYLTSIFD-HSIYEAFSRIVQKLIPELSFLENMLDNLI 187 (331)
T ss_dssp SHHHHHHHHHHHHHHHHTTSSSSCS-CCCEEEECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTGGG
T ss_pred hhhhhhHHHHhhHHHHHHHHhhccc-ccCceEEEeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2111111334444444444443221 1257899999998 588765332212222 2344555666553
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=136.66 Aligned_cols=158 Identities=13% Similarity=0.210 Sum_probs=72.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe-
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT- 143 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~- 143 (496)
.++|+++|++|+|||||+++|+.. +...... +.....+..++++++.....+...+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~-~~~~~~~---------------------~~~~~~~~~~ti~~~~~~~~~~~~~~~ 94 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLT-DLYPERV---------------------IPGAAEKIERTVQIEASTVEIEERGVK 94 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTC-CC------------------------------------CEEEEEEEEC----CEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCC-CCCCCCc---------------------ccCCCcccCCceeEEEEEEEeecCCcc
Confidence 478999999999999999998522 2111110 00001111233444433333444443
Q ss_pred -EEEEEeCCCCcccHh-----------------HHhhccc----------cCCEEEEEEeCCCCccccccCCCCchHHHH
Q 010985 144 -RFTILDAPGHKSYVP-----------------NMISGAS----------QADIGVLVISARKGEFETGFEKGGQTREHV 195 (496)
Q Consensus 144 -~i~liDtpG~~~~~~-----------------~~~~~~~----------~aD~~ilVvda~~g~~e~~~~~~~~t~e~~ 195 (496)
.++++||||+.++.. ..+.... .+|+++++|++....+ .....+.+
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l------~~~d~~~~ 168 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGL------KPLDVAFM 168 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSC------CHHHHHHH
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCc------chhHHHHH
Confidence 789999999943321 1122111 2357888888743321 01222222
Q ss_pred HHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 196 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 196 ~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
..+ ..++| +|+|+||+|+. ........+.++...++..+ ++++++||++|.| ++.
T Consensus 169 ~~l-~~~~p-iIlV~NK~Dl~----~~~ev~~~k~~i~~~~~~~~------i~~~~~Sa~~~~~-~e~ 223 (361)
T 2qag_A 169 KAI-HNKVN-IVPVIAKADTL----TLKERERLKKRILDEIEEHN------IKIYHLPDAESDE-DED 223 (361)
T ss_dssp HHT-CS-SC-EEEEEECCSSS----CHHHHHHHHHHHHHHTTCC-------CCSCCCC----------
T ss_pred HHh-ccCCC-EEEEEECCCCC----CHHHHHHHHHHHHHHHHHCC------CCEEeCCCcCCCc-chh
Confidence 222 23567 89999999983 23344444556666665543 5689999999998 543
No 186
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=131.63 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=48.7
Q ss_pred cCCEEEEEEeCCCC---ccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHh
Q 010985 166 QADIGVLVISARKG---EFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKA 238 (496)
Q Consensus 166 ~aD~~ilVvda~~g---~~e~~~~~~~~t~e~~~~~~----~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~ 238 (496)
.||++|+|+|++.. .++ .....+..+. ..++| +++|.||+|+. ..... ++...+.+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~-------~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~----~~~~v----~~~~~~~~~ 225 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFD-------DQLKFVSNLYNQLAKTKKP-IVVVLTKCDEG----VERYI----RDAHTFALS 225 (255)
T ss_dssp ECCEEEEEEECBC----CHH-------HHHHHHHHHHHHHHHTTCC-EEEEEECGGGB----CHHHH----HHHHHHHHT
T ss_pred cCCEEEEEEECCCCchhhHH-------HHHHHHHHHHHHhccCCCC-EEEEEEccccc----ccHHH----HHHHHHHHh
Confidence 69999999999874 221 1222222222 24677 89999999982 12222 334444433
Q ss_pred cCCCccCCeeEEeecccccccccccc
Q 010985 239 SGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 239 ~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
. ..++++.+||++|.|++++.
T Consensus 226 ~-----~~~~~~e~SAk~g~gv~elf 246 (255)
T 3c5h_A 226 K-----KNLQVVETSARSNVNVDLAF 246 (255)
T ss_dssp S-----SSCCEEECBTTTTBSHHHHH
T ss_pred c-----CCCeEEEEECCCCCCHHHHH
Confidence 2 13579999999999999864
No 187
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.40 E-value=1.8e-12 Score=118.43 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=94.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCe
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 143 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 143 (496)
..++|+++|++|||||||+++|+...-. ....+.++.+.....+..++.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-------------------------------LESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCC-------------------------------CSCCCCCSEEEEEEEEEETTE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceEEEEEEEEECCE
Confidence 4589999999999999999999632111 011122333444445556665
Q ss_pred E--EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC
Q 010985 144 R--FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 218 (496)
Q Consensus 144 ~--i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~~ivviNK~D~~~~ 218 (496)
. +.++||||+++|...+......+|.+++|+|...... + ......+..+.. .+.| +++++||+|+...
T Consensus 77 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 77 TIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIV-IMLVGNKSDLRHL 149 (191)
T ss_dssp EEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECcccccc
Confidence 4 5579999998887666666678899999999876421 0 011112222222 2345 8899999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 219 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 219 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
..... ...+.+.... .+.++.+||+++.|+.++.
T Consensus 150 --~~~~~----~~a~~l~~~~------~~~~ld~Sald~~~v~~l~ 183 (191)
T 1oix_A 150 --RAVPT----DEARAFAEKN------GLSFIETSALDSTNVEAAF 183 (191)
T ss_dssp --CCSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred --cccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 11011 1223333333 3578899999999998853
No 188
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.37 E-value=7.8e-13 Score=132.65 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=81.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..+|+|+|.||+|||||+|+|+..... ....+++|++.....+.+.+.+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~-------------------------------v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESE-------------------------------AAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCC-------------------------------GGGTCSSCCCEEEEEEEETTEE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCc-------------------------------ccCCCCceeeeeeEEEEeCCcE
Confidence 468999999999999999999632211 1123889999999999999999
Q ss_pred EEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH-HHHHHc-----CCceEEEEEe
Q 010985 145 FTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL-----GVTKLLLVVN 211 (496)
Q Consensus 145 i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~-~~~~~~-----~~~~~ivviN 211 (496)
+.|+||||..+ ..+..+..++.||++++|||++++. ...+.+ ..+... ..| .++++|
T Consensus 121 i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~---------~~~~~i~~EL~~~~~~l~~k~-~~i~~n 190 (376)
T 4a9a_A 121 IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL---------HHKQIIEKELEGVGIRLNKTP-PDILIK 190 (376)
T ss_dssp EEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH---------HHHHHHHHHHHHTTEEETCCC-CCEEEE
T ss_pred EEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH---------HHHHHHHHHHHHhhHhhccCC-hhhhhh
Confidence 99999999643 2456677788999999999998753 112211 223332 234 578999
Q ss_pred eccCC
Q 010985 212 KMDDH 216 (496)
Q Consensus 212 K~D~~ 216 (496)
|+|..
T Consensus 191 K~d~~ 195 (376)
T 4a9a_A 191 KKEKG 195 (376)
T ss_dssp ECSSS
T ss_pred Hhhhh
Confidence 99973
No 189
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.36 E-value=6.1e-13 Score=135.59 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=91.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC-e
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 143 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-~ 143 (496)
...|+++|++|||||||+++|+.....+. ..+.+|.+.....+...+ .
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~-------------------------------~~~ftTl~p~~G~V~~~~~~ 205 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIA-------------------------------PYPFTTLSPNLGVVEVSEEE 205 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEEC-------------------------------CCTTCSSCCEEEEEECSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCcccc-------------------------------CcccceecceeeEEEecCcc
Confidence 45689999999999999999842211000 012344444444555554 7
Q ss_pred EEEEEeCCCCccc-------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeeccC
Q 010985 144 RFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDD 215 (496)
Q Consensus 144 ~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviNK~D~ 215 (496)
.++++|+||+.+. .......+..+|.+|+|+|++...++ .++ ...++...++. ....| .|+++||+|+
T Consensus 206 ~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~-~ls--~g~~el~~la~aL~~~P-~ILVlNKlDl 281 (416)
T 1udx_A 206 RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLK-TLE--TLRKEVGAYDPALLRRP-SLVALNKVDL 281 (416)
T ss_dssp EEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHH-HHH--HHHHHHHHHCHHHHHSC-EEEEEECCTT
T ss_pred eEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHH-HHH--HHHHHHHHHhHHhhcCC-EEEEEECCCh
Confidence 8999999997542 12334445679999999999721110 000 01111222222 13567 6678899998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 216 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 216 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. . .+.+ ..+...++.. ..+++++||+++.|++++.+
T Consensus 282 ~--~--~~~~----~~l~~~l~~~------g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 282 L--E--EEAV----KALADALARE------GLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp S--C--HHHH----HHHHHHHHTT------TSCEEECCTTTCTTHHHHHH
T ss_pred h--h--HHHH----HHHHHHHHhc------CCeEEEEECCCccCHHHHHH
Confidence 3 2 2222 3344444433 24689999999999999754
No 190
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.35 E-value=1.5e-12 Score=137.79 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=56.3
Q ss_pred eEEEEEeCCCCcc-----------cHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 010985 143 TRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 211 (496)
Q Consensus 143 ~~i~liDtpG~~~-----------~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN 211 (496)
..++|+||||+.+ |...+...+..+|++|+|+|++.... ..+..+.+..+...+.| +++|+|
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~------~~~~~~~l~~l~~~~~p-vilVlN 226 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEI------SDEFSEAIGALRGHEDK-IRVVLN 226 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCC------CHHHHHHHHHTTTCGGG-EEEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCC------CHHHHHHHHHHHhcCCC-EEEEEE
Confidence 4689999999875 55666677889999999999987311 13455555555555667 899999
Q ss_pred eccCCCCCccHHHHHHHHHHHH
Q 010985 212 KMDDHTVNWSKERYDEIESKMT 233 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~ 233 (496)
|+|+. +.+.+.++...+.
T Consensus 227 K~Dl~----~~~el~~~~~~l~ 244 (550)
T 2qpt_A 227 KADMV----ETQQLMRVYGALM 244 (550)
T ss_dssp CGGGS----CHHHHHHHHHHHH
T ss_pred CCCcc----CHHHHHHHHHHhh
Confidence 99983 3444555555444
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.35 E-value=1.1e-12 Score=131.91 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=60.0
Q ss_pred CeEEEEEeCCCCcc------------cHhHH-hhcccc-CCEEEEEEeCCCCccccccCCCCchH-HHHHHHHHcCCceE
Q 010985 142 TTRFTILDAPGHKS------------YVPNM-ISGASQ-ADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 206 (496)
Q Consensus 142 ~~~i~liDtpG~~~------------~~~~~-~~~~~~-aD~~ilVvda~~g~~e~~~~~~~~t~-e~~~~~~~~~~~~~ 206 (496)
...++|+||||..+ .+..+ ...+.. .+++++|+|++.+.. .+.. +.+..+...+.| +
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~-------~~~~~~i~~~~~~~~~~-~ 200 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKVAKEVDPQGQR-T 200 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG-------GCHHHHHHHHHCTTCTT-E
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc-------hhHHHHHHHHhCcCCCc-e
Confidence 57899999999643 22233 333444 456666788876532 2222 233444445677 8
Q ss_pred EEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 207 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 207 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
|+|+||+|+..... + ...+ +.... ..+. ..-.+++++||++|.|+.++.+
T Consensus 201 i~V~NK~Dl~~~~~--~-~~~~---~~~~~--~~l~-~~~~~v~~~SA~~~~~i~~l~~ 250 (353)
T 2x2e_A 201 IGVITKLDLMDEGT--D-ARDV---LENKL--LPLR-RGYIGVVNRSQKDIDGKKDITA 250 (353)
T ss_dssp EEEEECGGGSCTTC--C-CHHH---HTTCS--SCCT-TCEEECCCCCHHHHHTTCCHHH
T ss_pred EEEeccccccCcch--h-HHHH---HhCCc--cccc-CCceEEEeCCcccccccccHHH
Confidence 89999999943221 0 1111 11100 0100 0124688999999999987643
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.33 E-value=4.2e-13 Score=125.32 Aligned_cols=164 Identities=15% Similarity=0.175 Sum_probs=87.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEee-ee---EEE-
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GR---AHF- 138 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~-~~---~~~- 138 (496)
...+|+++|++|+|||||+++|+........-.. .. .+.+. + .|.. .-+..|.+.-. .. ..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~--i~---~d~~~-~------~d~~-~~~~~~~~~~~~~~~~~~~~~ 95 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGA--ML---GDVVS-K------ADYE-RVRRFGIKAEAISTGKECHLD 95 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEE--EE---CSCCC-H------HHHH-HHHTTTCEEEECCCTTCSSCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEE--Ee---cCCCC-c------hhHH-HHHhCCCcEEEecCCceeecc
Confidence 4579999999999999999999865421100000 00 00000 0 0000 00011222111 00 011
Q ss_pred ---------EeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 010985 139 ---------ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 209 (496)
Q Consensus 139 ---------~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivv 209 (496)
.+.+..+.|+||||.... ... .-..++.+++|+|+..+. .. .+......+.| +++|
T Consensus 96 ~~~~~~~~~~~~~~d~iiidt~G~~~~-~~~--~~~~~~~~i~vvd~~~~~---------~~--~~~~~~~~~~~-~iiv 160 (221)
T 2wsm_A 96 AHMIYHRLKKFSDCDLLLIENVGNLIC-PVD--FDLGENYRVVMVSVTEGD---------DV--VEKHPEIFRVA-DLIV 160 (221)
T ss_dssp HHHHHTTGGGGTTCSEEEEEEEEBSSG-GGG--CCCSCSEEEEEEEGGGCT---------TH--HHHCHHHHHTC-SEEE
T ss_pred cHHHHHHHHhcCCCCEEEEeCCCCCCC-Cch--hccccCcEEEEEeCCCcc---------hh--hhhhhhhhhcC-CEEE
Confidence 335678999999995111 000 012468899999998762 11 11222334677 6789
Q ss_pred EeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 210 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 210 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+||+|+... ....++++.+. ++..+ ...+++++||++|.|++++.+
T Consensus 161 ~NK~Dl~~~--~~~~~~~~~~~----~~~~~----~~~~i~~~Sa~~g~gi~~l~~ 206 (221)
T 2wsm_A 161 INKVALAEA--VGADVEKMKAD----AKLIN----PRAKIIEMDLKTGKGFEEWID 206 (221)
T ss_dssp EECGGGHHH--HTCCHHHHHHH----HHHHC----TTSEEEECBTTTTBTHHHHHH
T ss_pred EecccCCcc--hhhHHHHHHHH----HHHhC----CCCeEEEeecCCCCCHHHHHH
Confidence 999998311 00123333333 33322 135899999999999998643
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.33 E-value=2.6e-12 Score=129.43 Aligned_cols=101 Identities=14% Similarity=0.230 Sum_probs=64.7
Q ss_pred CeEEEEEeCCCCccc-------------HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHH---cCCce
Q 010985 142 TTRFTILDAPGHKSY-------------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTK 205 (496)
Q Consensus 142 ~~~i~liDtpG~~~~-------------~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~---~~~~~ 205 (496)
...++|+||||..++ ...+...+..+|++|+|+|+..... .+.+.+.++.. .+.|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~--------~~~~~~~l~~~~~~~~~~- 205 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL--------ATSDAIKISREVDPSGDR- 205 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG--------GGCHHHHHHHHSCTTCTT-
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc--------CCHHHHHHHHHhcccCCC-
Confidence 567999999998776 4455566789999999998754321 22333444444 4566
Q ss_pred EEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 206 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 206 ~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+|+|+||+|+.... ... .+ .++..... ...+++++|+.++.++.+.
T Consensus 206 ~i~V~nK~Dl~~~~--~~~----~~----~~~~~~~~--~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 206 TFGVLTKIDLMDKG--TDA----VE----ILEGRSFK--LKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp EEEEEECGGGCCTT--CCS----HH----HHTTSSSC--CSSCCEEECCCCHHHHHTT
T ss_pred EEEEEeCCccCCCc--ccH----HH----HHcCcccc--ccCCeEEEEECChHHhccC
Confidence 88999999984322 111 11 11111111 2357899999999988764
No 194
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.32 E-value=4e-12 Score=137.57 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=71.1
Q ss_pred ccEEeeeeEEEEeC-CeEEEEEeCCCCccc------------HhHH-hhcc-ccCCEEEEEEeCCCCccccccCCCCchH
Q 010985 128 GKTVEVGRAHFETE-TTRFTILDAPGHKSY------------VPNM-ISGA-SQADIGVLVISARKGEFETGFEKGGQTR 192 (496)
Q Consensus 128 G~T~~~~~~~~~~~-~~~i~liDtpG~~~~------------~~~~-~~~~-~~aD~~ilVvda~~g~~e~~~~~~~~t~ 192 (496)
|++.+.....+... ...++|+||||.... +..+ ...+ ..+|++++|+|++.+.. .+..
T Consensus 134 ~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-------~~d~ 206 (772)
T 3zvr_A 134 GISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDA 206 (772)
T ss_dssp CCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-------SCHH
T ss_pred cccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-------hhHH
Confidence 44444444444433 467999999996441 2222 2222 57899999999998642 2333
Q ss_pred -HHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 193 -EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 193 -e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
..+..+...+.| +|+|+||+|+....-. ...+.. ... ..+. ..-.+++++||++|.|++++.+
T Consensus 207 l~ll~~L~~~g~p-vIlVlNKiDlv~~~~~---~~~il~--~~~---~~l~-lg~~~VV~iSA~~G~GvdeL~e 270 (772)
T 3zvr_A 207 LKIAKEVDPQGQR-TIGVITKLDLMDEGTD---ARDVLE--NKL---LPLR-RGYIGVVNRSQKDIDGKKDITA 270 (772)
T ss_dssp HHHHHHHCTTCSS-EEEEEECTTSSCTTCC---SHHHHT--TCS---SCCS-SCEEECCCCCCEESSSSEEHHH
T ss_pred HHHHHHHHhcCCC-EEEEEeCcccCCcchh---hHHHHH--HHh---hhhh-ccCCceEEecccccccchhHHH
Confidence 445555556777 8899999999533211 111110 000 0000 0124789999999999988754
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.26 E-value=1.9e-11 Score=121.91 Aligned_cols=83 Identities=14% Similarity=0.090 Sum_probs=58.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|.||+|||||+|+|+... .. ....+++|++.....+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~------------------------------v~~~p~tTi~p~~g~v~~~~~r 50 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IE------------------------------AANYPFCTIEPNTGVVPMPDPR 50 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------------------------------------CCCCCCCCSSEEECCCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-Cc------------------------------ccCCCCceECceEEEEecCCcc
Confidence 3689999999999999999996322 10 11125566665555555544
Q ss_pred ---------------eEEEEEeCCCCcccH-------hHHhhccccCCEEEEEEeCCC
Q 010985 143 ---------------TRFTILDAPGHKSYV-------PNMISGASQADIGVLVISARK 178 (496)
Q Consensus 143 ---------------~~i~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvda~~ 178 (496)
..+.|+||||+.++. ...+..++.+|++++|+|+..
T Consensus 51 ~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 51 LDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 579999999988763 223445789999999999986
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.21 E-value=1.1e-10 Score=111.83 Aligned_cols=107 Identities=13% Similarity=0.161 Sum_probs=62.9
Q ss_pred CeEEEEEeCCCCcccHh------HHhhccccCCEEEEEEeCCCCccccccCCCCchHH-----HHHHHHHcCCceEEEEE
Q 010985 142 TTRFTILDAPGHKSYVP------NMISGASQADIGVLVISARKGEFETGFEKGGQTRE-----HVMLAKTLGVTKLLLVV 210 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~------~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e-----~~~~~~~~~~~~~ivvi 210 (496)
++.+.|+||||..++.. .+...+.. +++|+|+|+..... ..... ........+.| +++|+
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~~~~~p-~~iv~ 178 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-------PNDYCFVRFFALLIDLRLGAT-TIPAL 178 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-------HHHHHHHHHHHHHHHHHHTSC-EEEEE
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-------HHHHHHHHHHHHHHhcccCCC-eEEEE
Confidence 36799999999876532 22345566 89999999876421 11111 11222345778 78999
Q ss_pred eeccCCCCCccHHHHHHHHH---HHHH---------------------HHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 211 NKMDDHTVNWSKERYDEIES---KMTP---------------------FLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 211 NK~D~~~~~~~~~~~~~i~~---~l~~---------------------~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
||+|+.. ....+++.+ ++.. .++..+. ..+++++||++|.|++++.+
T Consensus 179 NK~D~~~----~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 179 NKVDLLS----EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP----PVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp CCGGGCC----HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC----CCCCEECCTTTCTTHHHHHH
T ss_pred ecccccc----cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC----cccceEEEecCcccHHHHHH
Confidence 9999832 211222222 1111 1233321 24789999999999998643
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.19 E-value=4.8e-11 Score=119.70 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=29.9
Q ss_pred CeEEEEEeCCCCccc-------HhHHhhccccCCEEEEEEeCCC
Q 010985 142 TTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARK 178 (496)
Q Consensus 142 ~~~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~ 178 (496)
+..+.|+||||+.++ ....+..++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 467999999998765 2345666889999999999986
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.17 E-value=6.5e-11 Score=117.85 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=60.7
Q ss_pred EEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 010985 138 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 217 (496)
Q Consensus 138 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~ 217 (496)
++..+..+.|+||||..+--. .....+|++++|+|+..+.-...+ +.. . ...+ .++++||+|+..
T Consensus 143 ~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i------~~~--i---~~~~-~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 143 CEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGI------KKG--I---FELA-DMIAVNKADDGD 207 (337)
T ss_dssp HHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------C------CTT--H---HHHC-SEEEEECCSTTC
T ss_pred HhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHH------HHH--H---hccc-cEEEEEchhccC
Confidence 344689999999999765322 223689999999998654210000 000 0 1224 356789999732
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCC-ccCCeeEEeeccccccccccccc
Q 010985 218 VNWSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. ........+.+...+....-. .....+++++||++|.|++++.+
T Consensus 208 ~---~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 208 G---ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWS 253 (337)
T ss_dssp C---HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHH
T ss_pred c---hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 1 222222333343333222100 00024789999999999998644
No 199
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.15 E-value=1.4e-10 Score=94.05 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=69.9
Q ss_pred CCCCeEEEEEEEEc-cCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEEcCccccccCCCCeEEEEeccCCccCcc
Q 010985 291 PNGPFRMPIIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 368 (496)
Q Consensus 291 ~~~p~~~~i~~~~~-~~G~v~~g~v~~G~l~~g~~v~~~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~ 368 (496)
...|..+.|...+. -.|+++.|+|++|+|++|+.| |++ ...+|+||+++++++++|.+||.|+++++|+.. +++
T Consensus 31 ~~~P~k~~ilp~~~~vFgpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~ 106 (116)
T 1xe1_A 31 KKPAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVK 106 (116)
T ss_dssp SSCSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCC
T ss_pred ecCcEEEEEEecCCeEECCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccC
Confidence 34677777776321 118899999999999999999 998 899999999999999999999999999999877 899
Q ss_pred eeeEEec
Q 010985 369 SGFVLSS 375 (496)
Q Consensus 369 ~G~vl~~ 375 (496)
+|++|..
T Consensus 107 ~GdVLyv 113 (116)
T 1xe1_A 107 KGDVLEI 113 (116)
T ss_dssp TTCEEEE
T ss_pred CCcEEEE
Confidence 9999863
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.05 E-value=1.2e-09 Score=106.99 Aligned_cols=160 Identities=13% Similarity=0.219 Sum_probs=71.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC--C
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~ 142 (496)
.++|+++|+.|+|||||+++|....-..+.. +. .+ .....+++..+.....++.. .
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~-------------------~~--g~~~~~t~~~~~~~~~~q~~~~~ 75 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS-------------------GA--AEKIERTVQIEASTVEIEERGVK 75 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC----------------------------------------------CEEEEC---CC
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc-------------------cC--CcccCCcceEeeEEEEecCCCcc
Confidence 4788999999999999999985321100000 00 00 00000111111111122222 3
Q ss_pred eEEEEEeCCCC-------ccc---Hh-------HHhhccc----------cCCEEEEEEeCCCCccccccCCCCchHHHH
Q 010985 143 TRFTILDAPGH-------KSY---VP-------NMISGAS----------QADIGVLVISARKGEFETGFEKGGQTREHV 195 (496)
Q Consensus 143 ~~i~liDtpG~-------~~~---~~-------~~~~~~~----------~aD~~ilVvda~~g~~e~~~~~~~~t~e~~ 195 (496)
..++++||||. +.| .. .....++ .++++++++++..+.+ + ....+.+
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~L----d--~~~~~~l 149 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGL----K--PLDVAFM 149 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSC----C--HHHHHHH
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCC----C--HHHHHHH
Confidence 57899999998 333 11 1122211 2345666666544211 1 2222222
Q ss_pred HHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 196 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 196 ~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
..+. -+++ +++|+||.|+. .........+++...++..+ ++++++||++| |++++..
T Consensus 150 ~~l~-~~~~-iilV~~K~Dl~----~~~e~~~~~~~~~~~~~~~~------~~~~e~Sa~~~-~v~e~f~ 206 (301)
T 2qnr_A 150 KAIH-NKVN-IVPVIAKADTL----TLKERERLKKRILDEIEEHN------IKIYHLPDAES-DEDEDFK 206 (301)
T ss_dssp HHHT-TTSC-EEEEECCGGGS----CHHHHHHHHHHHHHHHHHTT------CCCCCCC----------CH
T ss_pred HHHH-hcCC-EEEEEEeCCCC----CHHHHHHHHHHHHHHHHHcC------CeEEecCCccc-cccHHHH
Confidence 2221 1345 88999999983 23334444566667777664 46899999999 9988643
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=4.5e-10 Score=114.48 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=74.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++|+++|+.|+|||||+++|+...-.... .|... .+ ..+.+.++.....+...+
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~------------~~~~~------~~-----~~~t~~~~~i~~v~q~~~~~ 87 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPE------------YPGPS------HR-----IKKTVQVEQSKVLIKEGGVQ 87 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCC------------CCSCC----------------CCEEEEEECC------C
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCC------------CCCcc------cC-----CccceeeeeEEEEEecCCcc
Confidence 467899999999999999999532210000 00000 00 001111121111222222
Q ss_pred eEEEEEeCCCCcccHh------HH-------------------hhcccc--CCEEEEEEeCC-CCccccccCCCCchHHH
Q 010985 143 TRFTILDAPGHKSYVP------NM-------------------ISGASQ--ADIGVLVISAR-KGEFETGFEKGGQTREH 194 (496)
Q Consensus 143 ~~i~liDtpG~~~~~~------~~-------------------~~~~~~--aD~~ilVvda~-~g~~e~~~~~~~~t~e~ 194 (496)
..++++||||...+.. .+ ...+.. ++++|++++++ .+. .+...+.
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L-------~~~d~~~ 160 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-------KPLDIEF 160 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSC-------CHHHHHH
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCC-------CHHHHHH
Confidence 3689999999876532 11 011223 34566666654 342 1233334
Q ss_pred HHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccc
Q 010985 195 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 262 (496)
Q Consensus 195 ~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~ 262 (496)
+..+.. +++ +|+|+||+|+. ....+...+..+...++..+ ++++.+|+.++.|+.+
T Consensus 161 lk~L~~-~v~-iIlVinK~Dll----~~~ev~~~k~~i~~~~~~~~------i~~~~~sa~~~~~v~~ 216 (418)
T 2qag_C 161 MKRLHE-KVN-IIPLIAKADTL----TPEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENK 216 (418)
T ss_dssp HHHHTT-TSE-EEEEEESTTSS----CHHHHHHHHHHHHHHHHHHT------CCCCCCC---------
T ss_pred HHHHhc-cCc-EEEEEEcccCc----cHHHHHHHHHHHHHHHHHcC------CeEEeCCCCCCcCHHH
Confidence 443332 666 89999999983 34456666677777777764 4578899999988875
No 202
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.01 E-value=3.1e-09 Score=106.11 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=83.0
Q ss_pred ccEEeeeeEEEEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCcc-------ccccCCCCchHHHHHHHHH
Q 010985 128 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF-------ETGFEKGGQTREHVMLAKT 200 (496)
Q Consensus 128 G~T~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~-------e~~~~~~~~t~e~~~~~~~ 200 (496)
..|+......+..++..+.++||+|++.|.+.+......++++|+|+|.+.... ...+ ......+..+..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~---~e~~~~~~~i~~ 254 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM---HESMKLFDSICN 254 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHH---HHHHHHHHHHHT
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhH---HHHHHHHHHHHc
Confidence 345555566778889999999999999999999999999999999999986310 0000 012222222222
Q ss_pred ----cCCceEEEEEeeccCCCCC------------cc-HHHHHHHHHHHHHHHHhcCCC-ccCCeeEEeecccccccccc
Q 010985 201 ----LGVTKLLLVVNKMDDHTVN------------WS-KERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKT 262 (496)
Q Consensus 201 ----~~~~~~ivviNK~D~~~~~------------~~-~~~~~~i~~~l~~~l~~~~~~-~~~~~~~ipiSa~~g~gi~~ 262 (496)
.++| +|++.||+|+.... +. ....++..+.+...+..+... ....+.++.+||++|.|+.+
T Consensus 255 ~~~~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 255 NKWFTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp CGGGTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred CccccCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 2456 99999999983100 00 001223333333333333211 01357889999999999998
Q ss_pred ccc
Q 010985 263 RVD 265 (496)
Q Consensus 263 l~~ 265 (496)
...
T Consensus 334 vF~ 336 (353)
T 1cip_A 334 VFD 336 (353)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.01 E-value=5.7e-10 Score=104.24 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=55.9
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCcc
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 221 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~ 221 (496)
+..+.++|++|.-.. .. ..-...+..+.|+|+..+.. ... .. ...++.| .++|+||+|+... .
T Consensus 118 ~~d~~~id~~g~i~~-~~--s~~~~~~~~~~v~~~~~~~~-------~~~-~~---~~~~~~~-~iiv~NK~Dl~~~--~ 180 (226)
T 2hf9_A 118 EIDLLFIENVGNLIC-PA--DFDLGTHKRIVVISTTEGDD-------TIE-KH---PGIMKTA-DLIVINKIDLADA--V 180 (226)
T ss_dssp GCSEEEEECCSCSSG-GG--GCCCSCSEEEEEEEGGGCTT-------TTT-TC---HHHHTTC-SEEEEECGGGHHH--H
T ss_pred CCCEEEEeCCCCccC-cc--hhhhccCcEEEEEecCcchh-------hHh-hh---hhHhhcC-CEEEEeccccCch--h
Confidence 347899999994211 11 11134577788999754321 011 01 1124667 6789999998311 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 222 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 222 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
...++ ++...++..+ ...+++++||++|.|+.++.+
T Consensus 181 ~~~~~----~~~~~~~~~~----~~~~~~~~Sa~~g~gv~~l~~ 216 (226)
T 2hf9_A 181 GADIK----KMENDAKRIN----PDAEVVLLSLKTMEGFDKVLE 216 (226)
T ss_dssp TCCHH----HHHHHHHHHC----TTSEEEECCTTTCTTHHHHHH
T ss_pred HHHHH----HHHHHHHHhC----CCCeEEEEEecCCCCHHHHHH
Confidence 00122 2333333332 135899999999999998643
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.97 E-value=1.8e-09 Score=112.45 Aligned_cols=66 Identities=27% Similarity=0.340 Sum_probs=41.9
Q ss_pred CCeEEEEEeCCCCcc----cHhHHhhc--cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 141 ETTRFTILDAPGHKS----YVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 141 ~~~~i~liDtpG~~~----~~~~~~~~--~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
.++.+.||||||... +...+... +..+|.+++||||..+. .....+..+... +|-.++|+||+|
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHhh-cCceEEEEeCCc
Confidence 678999999999763 23222222 23789999999998862 223333322221 341268999999
Q ss_pred CC
Q 010985 215 DH 216 (496)
Q Consensus 215 ~~ 216 (496)
..
T Consensus 252 ~~ 253 (504)
T 2j37_W 252 GH 253 (504)
T ss_dssp SC
T ss_pred cc
Confidence 84
No 205
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.92 E-value=7.6e-09 Score=101.81 Aligned_cols=131 Identities=12% Similarity=0.108 Sum_probs=83.4
Q ss_pred cccEEeeeeEEEEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCC-------CccccccCCCCchHHHHHHHH
Q 010985 127 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK-------GEFETGFEKGGQTREHVMLAK 199 (496)
Q Consensus 127 ~G~T~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-------g~~e~~~~~~~~t~e~~~~~~ 199 (496)
+..|+-.....++.++..+.++||+|++.|.+.+....+.++++|+|+|.+. ... .....+.+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~------~nr~~es~~~~~ 224 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN------ENRMEESKALFR 224 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTT------SBHHHHHHHHHH
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccccccc------HhHHHHHHHHHH
Confidence 4455556667788889999999999999999999999999999999998752 110 011122222222
Q ss_pred H-------cCCceEEEEEeeccCCCCC------------cc--HHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccc
Q 010985 200 T-------LGVTKLLLVVNKMDDHTVN------------WS--KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL 258 (496)
Q Consensus 200 ~-------~~~~~~ivviNK~D~~~~~------------~~--~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~ 258 (496)
. .++| ++++.||+|+.... |. ...+++..+-+...+....-.....+.+..+||+++.
T Consensus 225 ~i~~~~~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~ 303 (327)
T 3ohm_A 225 TIITYPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE 303 (327)
T ss_dssp HHHTSGGGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHH
T ss_pred HHhhhhccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCH
Confidence 1 2456 89999999983210 00 0123333333333343333222235677889999999
Q ss_pred cccccc
Q 010985 259 NMKTRV 264 (496)
Q Consensus 259 gi~~l~ 264 (496)
|+....
T Consensus 304 nV~~vF 309 (327)
T 3ohm_A 304 NIRFVF 309 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998853
No 206
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.91 E-value=8.6e-11 Score=118.46 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=71.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..+|+++|.+|+|||||+|+|+..... + .+.......+|+|++.....+. ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~-----------------~--------~~~~~~~~~~gtT~~~~~~~~~---~~ 213 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATG-----------------K--------GNVITTSYFPGTTLDMIEIPLE---SG 213 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHH-----------------T--------TCCCEEEECTTSSCEEEEEECS---TT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccC-----------------C--------ccceeecCCCCeEEeeEEEEeC---CC
Confidence 468999999999999999999743100 0 0000112347888877654432 23
Q ss_pred EEEEeCCCCccc-------HhHHhhcc---ccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 145 FTILDAPGHKSY-------VPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 145 i~liDtpG~~~~-------~~~~~~~~---~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
+.++||||..+. ....+..+ ...|.+++++++....+..++.. +..+...+.| +++++||+|
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~~-~~~v~~k~d 285 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRRS-FVCYMANEL 285 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEE-EEEEECTTS
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCce-EEEEecCCc
Confidence 899999995432 11122222 67899999999965443222221 1122234566 899999999
Q ss_pred CC
Q 010985 215 DH 216 (496)
Q Consensus 215 ~~ 216 (496)
..
T Consensus 286 ~~ 287 (369)
T 3ec1_A 286 TV 287 (369)
T ss_dssp CE
T ss_pred cc
Confidence 84
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.89 E-value=1.6e-10 Score=116.35 Aligned_cols=151 Identities=12% Similarity=0.100 Sum_probs=83.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeE
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 144 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 144 (496)
..+|+++|.+|+|||||+|+|+.....- .+ +.......+|+|++.....+. ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~-----------------~~-------~~~~~~~~~gtT~~~~~~~~~---~~ 212 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDE-----------------TE-------NVITTSHFPGTTLDLIDIPLD---EE 212 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTS-----------------CS-------SCCEEECCC----CEEEEESS---SS
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccc-----------------cc-------cceecCCCCCeecceEEEEec---CC
Confidence 3689999999999999999997543110 00 000122347888877655432 23
Q ss_pred EEEEeCCCCccc-------HhHHhhc---cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 145 FTILDAPGHKSY-------VPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 145 i~liDtpG~~~~-------~~~~~~~---~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
+.++||||..+. ....+.. ....+..++++++....+..++.. +..+...+.| +++++||+|
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------~d~l~~~~~~-~~~v~nk~d 284 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-------FDYVSGGRRA-FTCHFSNRL 284 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEE-EEEEECTTS
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-------EEEecCCCce-EEEEecCcc
Confidence 899999996432 1111211 357899999999965444322221 1112223566 899999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
.... ...+...+.++ +.+| ..+.|.++...+++.++
T Consensus 285 ~~~~----~~~~~~~~~~~---~~~g------~~l~p~~~~~~~~~~~l 320 (368)
T 3h2y_A 285 TIHR----TKLEKADELYK---NHAG------DLLSPPTPEELENMPEL 320 (368)
T ss_dssp CEEE----EEHHHHHHHHH---HHBT------TTBCSSCHHHHHTSCCE
T ss_pred cccc----ccHHHHHHHHH---HHhC------CccCCCchhhHhhccCc
Confidence 8422 12222223222 2333 23566777666666554
No 208
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.83 E-value=3.1e-08 Score=97.79 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=82.4
Q ss_pred cccEEeeeeEEEEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCc---cccccCCCCchH---HHHHHHHH
Q 010985 127 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTR---EHVMLAKT 200 (496)
Q Consensus 127 ~G~T~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~---~e~~~~~~~~t~---e~~~~~~~ 200 (496)
+..|+-.....+..++..+.++||+|++.|.+.+....+.++++|+|+|.+.-. .+.. . ..... ..+..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~-~-~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDG-N-TSRLTESIAVFKDIMT 222 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--C-C-SBHHHHHHHHHHHHHH
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccccc-c-cchHHHHHHHHHHHhh
Confidence 445666667778888999999999999999999999999999999999987210 0000 0 01122 22222222
Q ss_pred ----cCCceEEEEEeeccCCCCC------------cc-HHHHHHHHHHHHHHH------HhcCCCcc-----------CC
Q 010985 201 ----LGVTKLLLVVNKMDDHTVN------------WS-KERYDEIESKMTPFL------KASGYNVK-----------KD 246 (496)
Q Consensus 201 ----~~~~~~ivviNK~D~~~~~------------~~-~~~~~~i~~~l~~~l------~~~~~~~~-----------~~ 246 (496)
.++| +|++.||+|+.... +. ...+++..+-+...+ ..+..... ..
T Consensus 223 ~~~~~~~p-iiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (340)
T 4fid_A 223 NEFLKGAV-KLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEK 301 (340)
T ss_dssp CGGGTTSE-EEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CE
T ss_pred hhccCCCe-EEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcc
Confidence 2466 99999999983100 00 001233333333333 22221111 24
Q ss_pred eeEEeecccccccccccc
Q 010985 247 VQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 247 ~~~ipiSa~~g~gi~~l~ 264 (496)
+.+..+||+++.|+....
T Consensus 302 iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 302 VYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp EEEEEECTTCHHHHHHHH
T ss_pred eEEEEEEeeCcHHHHHHH
Confidence 678899999999998754
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.82 E-value=3.2e-09 Score=106.91 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=52.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
.....+|+++|.+|+|||||+|+|....- . ....+++|++.....+...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~------------------------------~~~~p~tTi~p~~g~v~v~ 67 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQA-S------------------------------AENFPFCTIDPNESRVPVP 67 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEECC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCc-c------------------------------ccCCCccccCceeEEEEEC
Confidence 34568999999999999999999963211 0 1112556666555554443
Q ss_pred C-----------------eEEEEEeCCCCcccHh-------HHhhccccCCEEEEEEeCCC
Q 010985 142 T-----------------TRFTILDAPGHKSYVP-------NMISGASQADIGVLVISARK 178 (496)
Q Consensus 142 ~-----------------~~i~liDtpG~~~~~~-------~~~~~~~~aD~~ilVvda~~ 178 (496)
+ ..+.|+||||+..+.. .....++.+|++++|+|+..
T Consensus 68 ~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 68 DERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred CccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 3599999999877543 45667789999999999975
No 210
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.80 E-value=1.6e-08 Score=102.70 Aligned_cols=141 Identities=16% Similarity=0.258 Sum_probs=76.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCC--
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 142 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-- 142 (496)
.++++|+|++|||||||+|.|++.. +. |.. .....++.++......+...+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~--l~--------------g~~-----------~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTK--FE--------------GEP-----------ATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSC--C--------------------------------CCSSCEEEEEEEEEEC--CE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcc--cc--------------CCc-----------CCCCCccceEeeEEEEeecCccc
Confidence 3569999999999999999996431 10 000 000113445443333333333
Q ss_pred eEEEEEeCCCCcccH-------------hHH----hh---cc-------ccC--C-EEEEEEeCCCCccccccCCCCchH
Q 010985 143 TRFTILDAPGHKSYV-------------PNM----IS---GA-------SQA--D-IGVLVISARKGEFETGFEKGGQTR 192 (496)
Q Consensus 143 ~~i~liDtpG~~~~~-------------~~~----~~---~~-------~~a--D-~~ilVvda~~g~~e~~~~~~~~t~ 192 (496)
..++++|+||....+ ... +. ++ ..+ | ++++|+|+..+. +.
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l----------~~ 164 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL----------KS 164 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-------------CH
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC----------CH
Confidence 368999999965431 111 11 11 122 2 466677877663 22
Q ss_pred HHHHHHHHc--CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeec
Q 010985 193 EHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPIS 253 (496)
Q Consensus 193 e~~~~~~~~--~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiS 253 (496)
..+.+++.+ +++ +|+|+||+|.. +.+........+...++..| ++++.+|
T Consensus 165 ~Dieilk~L~~~~~-vI~Vi~KtD~L----t~~E~~~l~~~I~~~L~~~g------i~I~~is 216 (427)
T 2qag_B 165 LDLVTMKKLDSKVN-IIPIIAKADAI----SKSELTKFKIKITSELVSNG------VQIYQFP 216 (427)
T ss_dssp HHHHHHHHTCSCSE-EEEEESCGGGS----CHHHHHHHHHHHHHHHBTTB------CCCCCCC
T ss_pred HHHHHHHHHhhCCC-EEEEEcchhcc----chHHHHHHHHHHHHHHHHcC------CcEEecC
Confidence 234444444 455 99999999983 34456666666666555543 3455555
No 211
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.74 E-value=2.5e-07 Score=93.46 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=57.2
Q ss_pred EEeeeeEEEEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCc---cccc-cCCCCchHHHHHHHHH----c
Q 010985 130 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETG-FEKGGQTREHVMLAKT----L 201 (496)
Q Consensus 130 T~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~---~e~~-~~~~~~t~e~~~~~~~----~ 201 (496)
|+......+..++..+.++||+|++.|...+......++++|+|+|.+.-. .|.. .+.-......+..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 444445667778899999999999999999999999999999999998610 0000 0000011222222221 2
Q ss_pred CCceEEEEEeeccC
Q 010985 202 GVTKLLLVVNKMDD 215 (496)
Q Consensus 202 ~~~~~ivviNK~D~ 215 (496)
++| +|+|.||+|+
T Consensus 284 ~~p-iiLvgNK~DL 296 (402)
T 1azs_C 284 TIS-VILFLNKQDL 296 (402)
T ss_dssp SCC-EEEEEECHHH
T ss_pred CCe-EEEEEEChhh
Confidence 456 8999999998
No 212
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.70 E-value=1.3e-07 Score=94.28 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=46.9
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCC-------CccccccCCCCchHHHHHHHHH----cCCceEEEEE
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK-------GEFETGFEKGGQTREHVMLAKT----LGVTKLLLVV 210 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-------g~~e~~~~~~~~t~e~~~~~~~----~~~~~~ivvi 210 (496)
...+.++||+|++.|...+....+.+|++|+|+|.+. ......+ ......+..+.. .++| +|+|.
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~---~~~~~~~~~i~~~~~~~~~p-iiLvg 257 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM---METKELFDWVLKQPCFEKTS-FMLFL 257 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHH---HHHHHHHHHHHTCGGGSSCE-EEEEE
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHH---HHHHHHHHHHHhccccCCCe-EEEEE
Confidence 4789999999999999999999999999999999861 1000000 011122222221 2466 99999
Q ss_pred eeccC
Q 010985 211 NKMDD 215 (496)
Q Consensus 211 NK~D~ 215 (496)
||+|+
T Consensus 258 NK~DL 262 (354)
T 2xtz_A 258 NKFDI 262 (354)
T ss_dssp ECHHH
T ss_pred ECcch
Confidence 99997
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.68 E-value=1.5e-08 Score=103.36 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=55.2
Q ss_pred CCeEEEEEeCCCCccc----HhHH--hhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 010985 141 ETTRFTILDAPGHKSY----VPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 214 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~--~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D 214 (496)
.++.+.||||||.... ...+ +..+..+|.++||+||..| ......+..... ..+-..||+||+|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g---------q~a~~~a~~f~~-~~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG---------QQAYNQALAFKE-ATPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-SCTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc---------hhHHHHHHHHHh-hCCCeEEEEECCC
Confidence 4588999999995432 2211 2233468999999999876 123333333332 2332468999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.... .-.+ ..+.... ..|+..++. |++++.+.
T Consensus 251 ~~~~------gG~~----ls~~~~~------g~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 251 GSAK------GGGA----LSAVAAT------GAPIKFIGT--GEKIDDIE 282 (443)
T ss_dssp SCSS------HHHH----HHHHHTT------CCCEEEEEC--SSSTTCEE
T ss_pred Cccc------ccHH----HHHHHHH------CCCEEEEEc--CCChHHhh
Confidence 7321 1111 1222222 346666764 99998764
No 214
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.65 E-value=1.4e-07 Score=95.87 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=85.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH----hCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEE
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFL----SGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 139 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~----~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~ 139 (496)
....++++|++|||||||+|.|++. .|.+.. +... +|+. ...++
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~------------------------~g~~------~t~~--~~v~q 115 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT------------------------GVVE------VTME--RHPYK 115 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCC------------------------CC----------CC--CEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEE------------------------CCee------ccee--EEecc
Confidence 4468999999999999999999742 222111 0000 1111 11222
Q ss_pred eCC-eEEEEEeCCCCcc---cHhHHhh--ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 010985 140 TET-TRFTILDAPGHKS---YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 213 (496)
Q Consensus 140 ~~~-~~i~liDtpG~~~---~~~~~~~--~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~ 213 (496)
... ..++++|+||... -+...+. ++...|..++ +++..+. .|....+..+...+.| +++|+||.
T Consensus 116 ~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~--------kqrv~la~aL~~~~~p-~~lV~tkp 185 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK--------KNDIDIAKAISMMKKE-FYFVRTKV 185 (413)
T ss_dssp CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC--------HHHHHHHHHHHHTTCE-EEEEECCH
T ss_pred ccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc--------HHHHHHHHHHHhcCCC-eEEEEecC
Confidence 222 2589999999531 2333333 2344465554 7765431 2444445555566777 89999999
Q ss_pred cCCC-----CCccHHHHHHHHHHHHHHH----HhcCCCccCCeeEEeecc--ccccccccccc
Q 010985 214 DDHT-----VNWSKERYDEIESKMTPFL----KASGYNVKKDVQFLPISG--LMGLNMKTRVD 265 (496)
Q Consensus 214 D~~~-----~~~~~~~~~~i~~~l~~~l----~~~~~~~~~~~~~ipiSa--~~g~gi~~l~~ 265 (496)
|+.- ...+....+++.+.+..+. +..|.. ...+|++|+ ..+.|++++.+
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~---~~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA---EPPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS---SCCEEECCTTCTTSTTHHHHHH
T ss_pred cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEecCcCCccCHHHHHH
Confidence 9730 0111112223344444443 333322 236899999 66667877543
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.64 E-value=4.4e-08 Score=98.77 Aligned_cols=87 Identities=18% Similarity=0.107 Sum_probs=62.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
...+.+++++|++|+|||||+|+|+....... ...+++|++.....+...
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~------------------------------~~~p~tTi~p~~G~v~v~ 66 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNP------------------------------ANYPYATIDPEEAKVAVP 66 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTST------------------------------TCCSSCCCCTTEEEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccc------------------------------cCCCceeecceeeeeeeC
Confidence 34578999999999999999999964221111 112566776666655555
Q ss_pred C-----------------eEEEEEeCCCCcc-------cHhHHhhccccCCEEEEEEeCCC
Q 010985 142 T-----------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 178 (496)
Q Consensus 142 ~-----------------~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 178 (496)
+ ..+.++|+||... +.......++.+|.+++|+|+..
T Consensus 67 ~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 67 DERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4 4689999999543 23455666789999999999864
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.63 E-value=1.4e-07 Score=90.56 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=44.1
Q ss_pred cCCEEEEEEeCC-CCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCC
Q 010985 166 QADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 242 (496)
Q Consensus 166 ~aD~~ilVvda~-~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 242 (496)
.++++++++|.. .|. .+...+.+..+... ++ +|+|+||+|.. ..+.....+..+...++..+..
T Consensus 111 Ral~~lllldep~~gL-------~~lD~~~l~~L~~~-~~-vI~Vi~K~D~l----t~~e~~~~k~~i~~~l~~~~i~ 175 (270)
T 3sop_A 111 RVHCCLYFISPTGHSL-------RPLDLEFMKHLSKV-VN-IIPVIAKADTM----TLEEKSEFKQRVRKELEVNGIE 175 (270)
T ss_dssp SCCEEEEEECCCSSSC-------CHHHHHHHHHHHTT-SE-EEEEETTGGGS----CHHHHHHHHHHHHHHHHHTTCC
T ss_pred eeeeeeEEEecCCCcC-------CHHHHHHHHHHHhc-Cc-EEEEEeccccC----CHHHHHHHHHHHHHHHHHcCcc
Confidence 468899999965 442 24555555555554 55 99999999983 4556667777787777776543
No 217
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.59 E-value=2.7e-07 Score=94.47 Aligned_cols=65 Identities=25% Similarity=0.313 Sum_probs=41.6
Q ss_pred CCeEEEEEeCCCCccc----HhHH--hhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCC-ceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSY----VPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~--~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~-~~~ivviNK~ 213 (496)
.++.+.||||||.... ...+ +..+..+|.+++|+||..+. .....+.... .++ +-..+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~-~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------QAGIQAKAFK-EAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------GHHHHHHHHH-TTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------HHHHHHHHHh-hcccCCeEEEEeCC
Confidence 5788999999996553 2222 22234799999999998761 2222222222 124 4367899999
Q ss_pred cC
Q 010985 214 DD 215 (496)
Q Consensus 214 D~ 215 (496)
|.
T Consensus 249 D~ 250 (432)
T 2v3c_C 249 DG 250 (432)
T ss_dssp SS
T ss_pred CC
Confidence 97
No 218
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.50 E-value=2.6e-07 Score=92.44 Aligned_cols=136 Identities=11% Similarity=0.146 Sum_probs=73.9
Q ss_pred cEEeeeeEEEEeCCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCc---cccc-cCCCCchHHHHHHHHH----
Q 010985 129 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETG-FEKGGQTREHVMLAKT---- 200 (496)
Q Consensus 129 ~T~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~---~e~~-~~~~~~t~e~~~~~~~---- 200 (496)
.|+......+..++..+.++||||++.|.+.+......++++|+|+|.+... .|.. ...-......+..+..
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 4544555667888999999999999999999999999999999999998721 0000 0000011222222221
Q ss_pred cCCceEEEEEeeccCCCCC------------c--cHHHHHHHHHHHHHHHHhcCCCc-cCCeeEEeeccccccccccccc
Q 010985 201 LGVTKLLLVVNKMDDHTVN------------W--SKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 201 ~~~~~~ivviNK~D~~~~~------------~--~~~~~~~i~~~l~~~l~~~~~~~-~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.++| +|++.||+|+.... | ....+++..+-+...+..+.-.+ ...+.++.+||++|.|+.....
T Consensus 267 ~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 267 SNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp TTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred CCCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 2456 99999999983100 0 00112333332222222221110 1246789999999999998643
No 219
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.45 E-value=1.2e-06 Score=89.35 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=55.6
Q ss_pred CCeEEEEEeCCCCcc------cHhHHhh--ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEe
Q 010985 141 ETTRFTILDAPGHKS------YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVN 211 (496)
Q Consensus 141 ~~~~i~liDtpG~~~------~~~~~~~--~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviN 211 (496)
.++.+.|+||||... ++..+.. .+..+|.++||+||..|. .....+.... .+++ ..|++|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq---------~a~~~a~~f~~~~~~--~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ---------KAYDLASRFHQASPI--GSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GGHHHHHHHHHHCSS--EEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch---------HHHHHHHHHhcccCC--cEEEEe
Confidence 467899999999644 2333222 233679999999998761 3333333333 3343 467999
Q ss_pred eccCCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 212 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 212 K~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
|+|.. .. .-.+.+ ..... ..|+..++. |++++++.
T Consensus 247 KlD~~-a~-----~G~als----~~~~~------g~Pi~fig~--Ge~v~dL~ 281 (433)
T 3kl4_A 247 KMDGT-AK-----GGGALS----AVVAT------GATIKFIGT--GEKIDELE 281 (433)
T ss_dssp CGGGC-SC-----HHHHHH----HHHHH------TCEEEEEEC--CSSSSCEE
T ss_pred ccccc-cc-----chHHHH----HHHHH------CCCEEEEEC--CCChHhCc
Confidence 99973 21 111111 11222 356777775 88887653
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.42 E-value=1.8e-07 Score=90.42 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=36.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 141 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~ 141 (496)
....++|+++|.||+|||||+|+|+..... .....+|+|++.....+
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~--- 163 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIA------------------------------KTGDRPGITTSQQWVKV--- 163 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------------------------------------CCEEE---
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCcee------------------------------ecCCCCCeeeeeEEEEe---
Confidence 456789999999999999999999632211 11223788887754333
Q ss_pred CeEEEEEeCCCCc
Q 010985 142 TTRFTILDAPGHK 154 (496)
Q Consensus 142 ~~~i~liDtpG~~ 154 (496)
+..+.|+||||..
T Consensus 164 ~~~~~l~DtpG~~ 176 (282)
T 1puj_A 164 GKELELLDTPGIL 176 (282)
T ss_dssp TTTEEEEECCCCC
T ss_pred CCCEEEEECcCcC
Confidence 4579999999964
No 221
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.29 E-value=2.6e-07 Score=97.68 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..+..+|+|+|.||+|||||+|+|++
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcC
Confidence 45678999999999999999999963
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.28 E-value=6.5e-06 Score=80.06 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=42.7
Q ss_pred CCeEEEEEeCCCCcc--cHhHHh------hccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 010985 141 ETTRFTILDAPGHKS--YVPNMI------SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 212 (496)
Q Consensus 141 ~~~~i~liDtpG~~~--~~~~~~------~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK 212 (496)
.++.+.||||||... .-..+. ..+..+|.+++|+|+..+ ....+.+..... ..+-..+|+||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---------QKAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---------HHHHHHHHHHHh-hCCCCEEEEeC
Confidence 577899999999766 322222 234579999999999764 233344433332 34435679999
Q ss_pred ccC
Q 010985 213 MDD 215 (496)
Q Consensus 213 ~D~ 215 (496)
+|.
T Consensus 249 ~D~ 251 (297)
T 1j8m_F 249 MDG 251 (297)
T ss_dssp GGG
T ss_pred CCC
Confidence 997
No 223
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.22 E-value=1.8e-06 Score=84.29 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=67.6
Q ss_pred EEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHH
Q 010985 144 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 223 (496)
Q Consensus 144 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~ 223 (496)
.+.++|| ++.|-......++.+|++|+|+|++...+. + ......+..+...++| +++|+||+|+. + ..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s--~---~~l~~~l~~~~~~~~p-iilv~NK~DL~--~--~~ 131 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETS--T---YIIDKFLVLAEKNELE-TVMVINKMDLY--D--ED 131 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCC--H---HHHHHHHHHHHHTTCE-EEEEECCGGGC--C--HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCC--H---HHHHHHHHHHHHCCCC-EEEEEeHHHcC--C--ch
Confidence 7899999 888866666778999999999999976310 0 0112233344446777 88999999993 2 21
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 224 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 224 ~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
.. +++..+++..+- . .+++++||++|.|++++..
T Consensus 132 ~v----~~~~~~~~~~~~---~-~~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 132 DL----RKVRELEEIYSG---L-YPIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp HH----HHHHHHHHHHTT---T-SCEEECCTTTCTTHHHHHH
T ss_pred hH----HHHHHHHHHHhh---h-CcEEEEECCCCcCHHHHHH
Confidence 11 223333333320 1 4699999999999998643
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.21 E-value=2.6e-06 Score=82.30 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=59.0
Q ss_pred EEeCCCCc-ccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEeeccCCCCCccHHH
Q 010985 147 ILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKER 224 (496)
Q Consensus 147 liDtpG~~-~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-~~~~~ivviNK~D~~~~~~~~~~ 224 (496)
+-+.|||. +..+.+...+..+|+++.|+||..+.. ... .. +...+ +.| .++|+||+|+. + .+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~-------~~~-~~--l~~~l~~kp-~ilVlNK~DL~--~--~~~ 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMS-------SRN-PM--IEDILKNKP-RIMLLNKADKA--D--AAV 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTT-------TSC-HH--HHHHCSSSC-EEEEEECGGGS--C--HHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc-------cCC-HH--HHHHHCCCC-EEEEEECcccC--C--HHH
Confidence 45689997 467788888999999999999998742 111 11 22223 455 78999999993 2 222
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 225 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 225 ~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
. +...++++..| .+++++||.+|.|+.++.+
T Consensus 68 ~----~~~~~~~~~~g------~~~i~iSA~~~~gi~~L~~ 98 (282)
T 1puj_A 68 T----QQWKEHFENQG------IRSLSINSVNGQGLNQIVP 98 (282)
T ss_dssp H----HHHHHHHHTTT------CCEEECCTTTCTTGGGHHH
T ss_pred H----HHHHHHHHhcC------CcEEEEECCCcccHHHHHH
Confidence 2 22233444333 4689999999999998643
No 225
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.02 E-value=3.4e-05 Score=75.97 Aligned_cols=94 Identities=13% Similarity=0.186 Sum_probs=54.9
Q ss_pred CeEEEEEeCCCCccc----HhHHhh--ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeecc
Q 010985 142 TTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 214 (496)
Q Consensus 142 ~~~i~liDtpG~~~~----~~~~~~--~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviNK~D 214 (496)
++.+.++||+|.... +..+.. .+-.+|-.++++|+..+ .+..+.+.... .+++. ++++||+|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------~~~~~~~~~~~~~~~it--~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------NAIVEQARQFNEAVKID--GIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------HHHHHHHHHHHHhcCCC--EEEEeCcC
Confidence 456778999996433 222211 12358999999998876 24444444443 45665 57999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCccCCeeEEeecccccccccccc
Q 010985 215 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
.. ... - .+ ...+... ..|+..++ +|++++++.
T Consensus 280 ~~-a~~-G----~~----l~~~~~~------~~pi~~i~--~Ge~v~dl~ 311 (328)
T 3e70_C 280 AD-ARG-G----AA----LSISYVI------DAPILFVG--VGQGYDDLR 311 (328)
T ss_dssp GC-SCC-H----HH----HHHHHHH------TCCEEEEE--CSSSTTCEE
T ss_pred Cc-cch-h----HH----HHHHHHH------CCCEEEEe--CCCCccccc
Confidence 62 221 1 11 1222233 24667776 788887753
No 226
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.93 E-value=9.4e-06 Score=79.20 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=60.9
Q ss_pred CcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHH
Q 010985 153 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 232 (496)
Q Consensus 153 ~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l 232 (496)
++.|..-....++++|.+++|+|++.+.+. + ....+.+..+...++| +|+|+||+|+. + ...+. ...+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s--~---~~l~~~l~~~~~~~~~-~ilV~NK~DL~--~--~~~v~-~~~~~ 134 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFN--N---YLLDNMLVVYEYFKVE-PVIVFNKIDLL--N--EEEKK-ELERW 134 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCC--H---HHHHHHHHHHHHTTCE-EEEEECCGGGC--C--HHHHH-HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCC--H---HHHHHHHHHHHhCCCC-EEEEEEcccCC--C--ccccH-HHHHH
Confidence 444433333468899999999999976421 0 1123344455567888 78999999993 2 22111 12334
Q ss_pred HHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 233 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 233 ~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
..+++..| .+++++||++|.|++++.+
T Consensus 135 ~~~~~~~g------~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 135 ISIYRDAG------YDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp HHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHCC------CeEEEEECCCCCCHHHHHh
Confidence 44555544 4689999999999998754
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.92 E-value=3.6e-06 Score=80.38 Aligned_cols=57 Identities=23% Similarity=0.213 Sum_probs=35.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEeeeeEEEEeCCeEE
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 145 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i 145 (496)
.+++++|.+|+|||||+|+|+..... .....+|+|...... .. +..+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~------------------------------~~~~~~g~T~~~~~~--~~-~~~~ 146 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS------------------------------SVGAQPGITKGIQWF--SL-ENGV 146 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------------------------------------CCSCEE--EC-TTSC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc------------------------------ccCCCCCCccceEEE--Ee-CCCE
Confidence 69999999999999999999632211 011125777655322 22 3578
Q ss_pred EEEeCCCCcc
Q 010985 146 TILDAPGHKS 155 (496)
Q Consensus 146 ~liDtpG~~~ 155 (496)
.++||||...
T Consensus 147 ~l~DtpG~~~ 156 (262)
T 3cnl_A 147 KILDTPGILY 156 (262)
T ss_dssp EEESSCEECC
T ss_pred EEEECCCccc
Confidence 9999999765
No 228
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.90 E-value=1.9e-05 Score=80.78 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCcccHhHHhh------ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSYVPNMIS------GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~------~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviNK~ 213 (496)
.++.+.||||||.-.+-..+.. .+..+|.+++|+|+..+. .....+.... .+++. -|++||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCCe--EEEEecC
Confidence 5788999999996554222222 244789999999998651 2222222222 23433 3699999
Q ss_pred cC
Q 010985 214 DD 215 (496)
Q Consensus 214 D~ 215 (496)
|.
T Consensus 251 D~ 252 (433)
T 2xxa_A 251 DG 252 (433)
T ss_dssp TS
T ss_pred CC
Confidence 97
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.78 E-value=5.1e-05 Score=72.31 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=55.0
Q ss_pred CCCccc-HhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHH
Q 010985 151 PGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 229 (496)
Q Consensus 151 pG~~~~-~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~ 229 (496)
|||... .+.+...+..+|++++|+||..+..... ... + ++ +.| .++|+||+|+. + .+..+
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~----~~l-~---ll---~k~-~iivlNK~DL~--~--~~~~~--- 65 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSA----YGV-D---FS---RKE-TIILLNKVDIA--D--EKTTK--- 65 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSC----TTS-C---CT---TSE-EEEEEECGGGS--C--HHHHH---
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcC----hHH-H---hc---CCC-cEEEEECccCC--C--HHHHH---
Confidence 888765 4577778899999999999998754211 111 1 11 666 78999999993 2 22222
Q ss_pred HHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 230 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 230 ~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
....+++..| .++ ++||.+|.|+.++.+
T Consensus 66 -~~~~~~~~~g------~~v-~iSa~~~~gi~~L~~ 93 (262)
T 3cnl_A 66 -KWVEFFKKQG------KRV-ITTHKGEPRKVLLKK 93 (262)
T ss_dssp -HHHHHHHHTT------CCE-EECCTTSCHHHHHHH
T ss_pred -HHHHHHHHcC------CeE-EEECCCCcCHHHHHH
Confidence 2233444444 346 899999999987543
No 230
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.71 E-value=3.3e-05 Score=77.52 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=62.1
Q ss_pred EEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHH
Q 010985 145 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 224 (496)
Q Consensus 145 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~ 224 (496)
+.-++++ +++|.+........+|++++|+|+.+... .+ .....+. + .+.| +++|+||+|+...+...
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~--~~~l~~~---l--~~~p-iilV~NK~DLl~~~~~~-- 117 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG--SF--IPGLPRF---A--ADNP-ILLVGNKADLLPRSVKY-- 117 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGG--GC--CSSHHHH---C--TTSC-EEEEEECGGGSCTTCCH--
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC--ch--hhHHHHH---h--CCCC-EEEEEEChhcCCCccCH--
Confidence 3334444 56776666555678899999999987532 11 1122221 1 1456 88999999995432222
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 225 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 225 ~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+.+.+.+...++..|+. ..+++++||++|.|+.++.+
T Consensus 118 -~~~~~~l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~~ 154 (369)
T 3ec1_A 118 -PKLLRWMRRMAEELGLC---PVDVCLVSAAKGIGMAKVME 154 (369)
T ss_dssp -HHHHHHHHHHHHTTTCC---CSEEEECBTTTTBTHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCC---cccEEEEECCCCCCHHHHHH
Confidence 23444455566777764 23689999999999988643
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.71 E-value=5.5e-05 Score=73.60 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=56.4
Q ss_pred ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCC
Q 010985 163 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 242 (496)
Q Consensus 163 ~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 242 (496)
.+.++|.+++|+|+..+.+.. ....+.+..+...+++ .++|+||+|+... . ...+..+.+...++..|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~-----~~i~r~L~~~~~~~~~-~vivlnK~DL~~~---~-~~~~~~~~~~~~y~~~g~- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFST-----ALLDRFLVLVEANDIQ-PIICITKMDLIED---Q-DTEDTIQAYAEDYRNIGY- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCH-----HHHHHHHHHHHTTTCE-EEEEEECGGGCCC---H-HHHHHHHHHHHHHHHHTC-
T ss_pred HHHhCCEEEEEEeCCCCCCCH-----HHHHHHHHHHHHCCCC-EEEEEECCccCch---h-hhHHHHHHHHHHHHhCCC-
Confidence 478999999999999876420 1122233333446788 6789999999422 1 111123344455555554
Q ss_pred ccCCeeEEeeccccccccccccc
Q 010985 243 VKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 243 ~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
+++++||.+|.|++++.+
T Consensus 152 -----~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 152 -----DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp -----CEEECCHHHHTTCTTTGG
T ss_pred -----eEEEEecCCCCCHHHHHh
Confidence 589999999999987644
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.67 E-value=8.8e-05 Score=76.37 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
.++-.++|+|..|||||||++.|.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 45678999999999999999998643
No 233
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.67 E-value=4e-05 Score=76.83 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=60.5
Q ss_pred CcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHH
Q 010985 153 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 232 (496)
Q Consensus 153 ~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l 232 (496)
.++|.+......+.+|++++|+|+.+... .+. ....+. + .+.| +++|+||+|+....... +.+.+.+
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~--~~~--~~l~~~---~--~~~p-~ilV~NK~DL~~~~~~~---~~~~~~l 122 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNG--SWL--PGLHRF---V--GNNK-VLLVGNKADLIPKSVKH---DKVKHWM 122 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHH--HCC--TTHHHH---S--SSSC-EEEEEECGGGSCTTSCH---HHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcc--cHH--HHHHHH---h--CCCc-EEEEEEChhcCCcccCH---HHHHHHH
Confidence 35666666555667889999999986321 110 111111 1 2556 88999999995332222 2333445
Q ss_pred HHHHHhcCCCccCCeeEEeeccccccccccccc
Q 010985 233 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 265 (496)
Q Consensus 233 ~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~ 265 (496)
...++..|+. ..+++.+||++|.|++++.+
T Consensus 123 ~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~~ 152 (368)
T 3h2y_A 123 RYSAKQLGLK---PEDVFLISAAKGQGIAELAD 152 (368)
T ss_dssp HHHHHHTTCC---CSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHcCCC---cccEEEEeCCCCcCHHHHHh
Confidence 5556666653 23689999999999998643
No 234
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.63 E-value=8.6e-05 Score=67.38 Aligned_cols=94 Identities=11% Similarity=0.001 Sum_probs=56.4
Q ss_pred CCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHH----HH-H---cCCceEEEEEeec-cCCCCCccH
Q 010985 152 GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AK-T---LGVTKLLLVVNKM-DDHTVNWSK 222 (496)
Q Consensus 152 G~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~----~~-~---~~~~~~ivviNK~-D~~~~~~~~ 222 (496)
|+..+...+......+|++|+|||+++... ...++.+.. +. . .++| ++|+.||. |++++ .+.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R-------~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~A-ms~ 181 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKR-MPC 181 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCC-------CCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCB-CCH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhH-------HHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCC-CCH
Confidence 677767777777889999999999987632 124444321 11 1 3567 88999995 77544 233
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 223 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 223 ~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
. ++.+.+. |..+. ..+.+.++||++|+|+.+-
T Consensus 182 ~---EI~e~L~--L~~l~----R~W~Iq~csA~TGeGL~EG 213 (227)
T 3l82_B 182 F---YLAHELH--LNLLN----HPWLVQDTEAETLTGFLNG 213 (227)
T ss_dssp H---HHHHHTT--GGGGC----SCEEEEEEETTTCTTHHHH
T ss_pred H---HHHHHcC--CcCCC----CCEEEEEeECCCCcCHHHH
Confidence 2 3333222 22221 3688999999999999873
No 235
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.62 E-value=0.0001 Score=78.93 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=39.8
Q ss_pred CeEEEEEeCCCCcc------------cHhHHhhc-ccc-CCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc---CCc
Q 010985 142 TTRFTILDAPGHKS------------YVPNMISG-ASQ-ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVT 204 (496)
Q Consensus 142 ~~~i~liDtpG~~~------------~~~~~~~~-~~~-aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~---~~~ 204 (496)
.-.+.|+|.||... -+..++.. +.. ..+++++++++... .+.+.+.++..+ |.+
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~---------a~~~~l~la~~v~~~g~r 216 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI---------ATTEALSMAQEVDPEGDR 216 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT---------TTCHHHHHHHHHCSSCCS
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh---------ccHHHHHHHHHHhhcCCc
Confidence 35699999998433 13344444 333 36677777776542 233445555554 556
Q ss_pred eEEEEEeeccCCC
Q 010985 205 KLLLVVNKMDDHT 217 (496)
Q Consensus 205 ~~ivviNK~D~~~ 217 (496)
.|+|+||.|+..
T Consensus 217 -tI~VlTK~Dlv~ 228 (608)
T 3szr_A 217 -TIGILTKPDLVD 228 (608)
T ss_dssp -EEEEEECGGGSS
T ss_pred -eEEEecchhhcC
Confidence 789999999853
No 236
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.61 E-value=7.9e-05 Score=58.66 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=66.2
Q ss_pred EEEEEEEc--cCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceee
Q 010985 297 MPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 371 (496)
Q Consensus 297 ~~i~~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 371 (496)
..|.++|+ ..|+++..+|.+|.++.+..+.+...+. ..++.|+.++.+++.++.+|.-|++.|.+. .|++.||
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~GD 86 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEGD 86 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCCC
Confidence 44555663 5699999999999999999999999883 568999999999999999999999999865 4799999
Q ss_pred EEec
Q 010985 372 VLSS 375 (496)
Q Consensus 372 vl~~ 375 (496)
++-.
T Consensus 87 ~Ie~ 90 (99)
T 1d1n_A 87 VIEA 90 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9854
No 237
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.50 E-value=0.00034 Score=57.04 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=67.1
Q ss_pred EEEEEEEEc--cCCe---EEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEEcCccccccCCCCeEEEEeccCCcc-C
Q 010985 296 RMPIIDKFK--DMGT---VVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEE-D 366 (496)
Q Consensus 296 ~~~i~~~~~--~~G~---v~~g~v~~G~l~~g~~v~~~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~-~ 366 (496)
+..|.++|+ ..|+ ++..+|..|.|+.+..+.+...+. ..++.|+.++.++|.++..|.-|++.|.+. . |
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~f--niD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEE--KVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCT--TSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEccC--CCC
Confidence 566777773 4577 899999999999999999999883 567899999999999999999999999854 4 7
Q ss_pred cceeeEEecC
Q 010985 367 ILSGFVLSSV 376 (496)
Q Consensus 367 i~~G~vl~~~ 376 (496)
++.||++-.-
T Consensus 90 ik~GDiIE~y 99 (120)
T 2crv_A 90 FKPGDQVICY 99 (120)
T ss_dssp CCTTEEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999998643
No 238
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.47 E-value=0.00035 Score=67.92 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
++-.|+++|+.|||||||++.|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999998643
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.45 E-value=0.0002 Score=69.37 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++..|+++|+.|+||||++..|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3466899999999999999998864
No 240
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.40 E-value=0.00046 Score=70.47 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
..+..-|+|+|.+++|||||+|+|+..
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 456788999999999999999999854
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.38 E-value=0.00041 Score=67.49 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=21.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
.+.-.|+++|++|+||||++..|.+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 44567899999999999999988643
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.22 E-value=0.00078 Score=68.42 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=39.2
Q ss_pred CCeEEEEEeCCCCccc----HhHH--hhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSY----VPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~--~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviNK~ 213 (496)
.++.+.||||||.-.. +..+ +..+..+|.++||+|+..+ ......+.... .+++ .-|++||+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---------q~av~~a~~f~~~l~i--~GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---------QEALSVARAFDEKVGV--TGLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHTCC--CEEEEESG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---------HHHHHHHHHHHhcCCc--eEEEEeCc
Confidence 5678999999995433 2222 1223368999999999765 12233332222 2444 35689999
Q ss_pred cC
Q 010985 214 DD 215 (496)
Q Consensus 214 D~ 215 (496)
|.
T Consensus 248 D~ 249 (425)
T 2ffh_A 248 DG 249 (425)
T ss_dssp GG
T ss_pred CC
Confidence 96
No 243
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.21 E-value=0.00072 Score=66.25 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.+...|+++|..|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566889999999999999998864
No 244
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.00052 Score=65.37 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=60.2
Q ss_pred CCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHH----HHH-H--H-cCCceEEEEEee-ccCCCCCc
Q 010985 150 APGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLA-K--T-LGVTKLLLVVNK-MDDHTVNW 220 (496)
Q Consensus 150 tpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~----~~~-~--~-~~~~~~ivviNK-~D~~~~~~ 220 (496)
..|+..+...+......+|++|+|||+++..- -..++.+ .++ . . .++| ++|+.|| .|++++ .
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR-------leak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~A-m 264 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKR-M 264 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCC-------CCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCB-C
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH-------HHHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCC-C
Confidence 34677777777788889999999999987632 1133322 222 1 1 3778 8899997 588544 2
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccc
Q 010985 221 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 263 (496)
Q Consensus 221 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l 263 (496)
+.. ++.+.+. |..+. ..+.+.++||++|+|+.+-
T Consensus 265 s~~---EI~e~L~--L~~l~----r~W~Iq~csA~tGeGL~EG 298 (312)
T 3l2o_B 265 PCF---YLAHELH--LNLLN----HPWLVQDTEAETLTGFLNG 298 (312)
T ss_dssp CHH---HHHHHTT--GGGGC----SCEEEEEEETTTCTTHHHH
T ss_pred CHH---HHHHHcC--CccCC----CcEEEEecccCCCcCHHHH
Confidence 322 3333222 12221 3678999999999999874
No 245
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.94 E-value=0.0014 Score=64.94 Aligned_cols=84 Identities=25% Similarity=0.235 Sum_probs=51.6
Q ss_pred ccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcCCC
Q 010985 163 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 242 (496)
Q Consensus 163 ~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 242 (496)
.+.++|.+++| ||..+.+. . ....+.+..+...+++ .++|+||+|+. + .+.. +..++....+...|+
T Consensus 127 i~anvD~v~iv-~a~~P~~~----~-~~i~r~L~~a~~~~~~-~iivlNK~DL~--~--~~~~-~~~~~~~~~y~~~G~- 193 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELS----L-NIIDRYLVGCETLQVE-PLIVLNKIDLL--D--DEGM-DFVNEQMDIYRNIGY- 193 (358)
T ss_dssp EEECCCEEEEE-EESTTTCC----H-HHHHHHHHHHHHHTCE-EEEEEECGGGC--C--HHHH-HHHHHHHHHHHTTTC-
T ss_pred HHhcCCEEEEE-EeCCCCCC----H-HHHHHHHHHHHhcCCC-EEEEEECccCC--C--chhH-HHHHHHHHHHHhCCC-
Confidence 36899999866 55555421 0 1122333444567888 68899999993 2 2221 112233344556654
Q ss_pred ccCCeeEEeecccccccccccc
Q 010985 243 VKKDVQFLPISGLMGLNMKTRV 264 (496)
Q Consensus 243 ~~~~~~~ipiSa~~g~gi~~l~ 264 (496)
+++++|+.+|.|+..+.
T Consensus 194 -----~v~~~Sa~~~~gl~~L~ 210 (358)
T 2rcn_A 194 -----RVLMVSSHTQDGLKPLE 210 (358)
T ss_dssp -----CEEECBTTTTBTHHHHH
T ss_pred -----cEEEEecCCCcCHHHHH
Confidence 58999999999998764
No 246
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.90 E-value=0.0024 Score=66.23 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=74.7
Q ss_pred HHhccCCCCCCCCCCeEEEEEEEEc--cCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEEcCccccccCCCCe
Q 010985 280 ALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGEN 354 (496)
Q Consensus 280 ~l~~l~~~~~~~~~p~~~~i~~~~~--~~G~v~~g~v~~G~l~~g~~v~~~p~~---~~~~V~sI~~~~~~v~~a~aG~~ 354 (496)
++..+..|.....-.-...|..+|+ ..|.++..+|..|.|+.|..+.+...+ ...+|.||+++++++.++..|+-
T Consensus 394 ~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~e 473 (501)
T 1zo1_I 394 AMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGME 473 (501)
T ss_dssp HHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCC
T ss_pred HHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCE
Confidence 3444434443333334555667884 459999999999999999999998777 46799999999999999999999
Q ss_pred EEEEeccCCccCcceeeEEecC
Q 010985 355 LRIRLSGIEEEDILSGFVLSSV 376 (496)
Q Consensus 355 v~~~l~~~~~~~i~~G~vl~~~ 376 (496)
|++.+.+. .+++.||++-.-
T Consensus 474 cgi~~~~~--~~~~~gd~~~~~ 493 (501)
T 1zo1_I 474 CGIGVKNY--NDVRTGDVIEVF 493 (501)
T ss_dssp EEEEBCCC--TTCCTTCEEEEC
T ss_pred EEEEEcCc--CCCCCCCEEEEE
Confidence 99999865 479999998643
No 247
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.85 E-value=0.0041 Score=60.27 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=22.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
..++-.++++|+.|||||||++.|.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998754
No 248
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.80 E-value=0.006 Score=54.98 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=44.5
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC-----CceEEEEEeeccC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-----VTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~-----~~~~ivviNK~D~ 215 (496)
.+.+.|+|||+... ..+...+..+|.+|+++.++... . .+...+..+..++ .+ +.+|+|+.|.
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~-------~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~ 142 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-F-------SAAGSVVTVLEAQAYSRKVE-ARFLITRKIE 142 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-H-------HHHHHHHHHHTTSCGGGCCE-EEEEECSBCT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-H-------HHHHHHHHHHHHHHhCCCCc-EEEEEeccCC
Confidence 57899999999763 34455667899999999987642 1 3444555555443 44 6889999995
No 249
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.74 E-value=0.0043 Score=59.94 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=37.9
Q ss_pred CCeEEEEEeCCCCccc----HhHHhhc--cccCCEEEEEEeCCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 010985 141 ETTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 213 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~----~~~~~~~--~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~-~~~~~~~ivviNK~ 213 (496)
.++.+.|+||||.... +..+... ...+|.+++|+|+..+ ....+.+.... .+++. -+++||+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---------~~~~~~~~~~~~~~~i~--givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---------QEALSVARAFDEKVGVT--GLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---------HHHHHHHHHHHHHTCCC--EEEEECG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc---------HHHHHHHHHHhhcCCCC--EEEEECC
Confidence 4678999999985422 2222111 1258999999998754 12223332222 33433 4689999
Q ss_pred cC
Q 010985 214 DD 215 (496)
Q Consensus 214 D~ 215 (496)
|.
T Consensus 248 d~ 249 (295)
T 1ls1_A 248 DG 249 (295)
T ss_dssp GG
T ss_pred CC
Confidence 96
No 250
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.74 E-value=0.0044 Score=64.79 Aligned_cols=179 Identities=13% Similarity=0.137 Sum_probs=121.6
Q ss_pred EeCCCCcccHhHHhhcccc-CCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe-eccCCCCCccHHHH
Q 010985 148 LDAPGHKSYVPNMISGASQ-ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 225 (496)
Q Consensus 148 iDtpG~~~~~~~~~~~~~~-aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviN-K~D~~~~~~~~~~~ 225 (496)
-|+-|.-+-+...+..+.. -.+-+=|+.+.-| +-++..+.++...+. +|+..| |.| .
T Consensus 346 ~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG---------~i~~~Dv~~a~~~~a--~i~~fnv~~~-------~--- 404 (537)
T 3izy_P 346 GDVDGSVEAILNVMDTYDASHECELDLVHFGVG---------DISENDVNLAETFHG--VIYGFNVNAG-------N--- 404 (537)
T ss_dssp BCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBS---------CBCHHHHHHHHHHSC--CEEESSCCBC-------H---
T ss_pred eCCcchHHHHHHHHHhcCCCCcEEEEEEEecCC---------CCCHHHHHHHHhcCC--eEEEecCCCC-------H---
Confidence 5888877777777777655 3455666666665 578888888888764 456665 222 1
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEeeccccccccccccccCCCCCCChhhHHHHHhccCCCCCCCCCCeEEEEEEEEc-
Q 010985 226 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK- 304 (496)
Q Consensus 226 ~~i~~~l~~~l~~~~~~~~~~~~~ipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~p~~~~i~~~~~- 304 (496)
..+...+..|. .+.. ..=|-++.+. +.+.+..+-.|.....-.-+..|..+|+
T Consensus 405 -----~~~~~a~~~~v------~i~~-----~~iiy~l~~~----------~~~~~~~~l~~~~~e~~~g~a~v~~~f~~ 458 (537)
T 3izy_P 405 -----VIQQLAAKKGV------KIKL-----HKIIYRLIED----------LQEELSSRLPCIVEEHPIGEASILATFSI 458 (537)
T ss_dssp -----HHHHHHHHHTC------CCBC-----SCSSCCSHHH----------HHHHHSSSSSCSSSCCCSSEEEEEEEESS
T ss_pred -----HHHHHHHHcCC------eEEE-----eChHHHHHHH----------HHHHHHhccCCceEEEEEEEEEEcCcEEE
Confidence 11112222222 2211 1112233221 4556666555555555556888888884
Q ss_pred --c--CCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEEcCccccccCCCCeEEEEeccCCccCcceeeEEe
Q 010985 305 --D--MGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 374 (496)
Q Consensus 305 --~--~G~v~~g~v~~G~l~~g~~v~~~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 374 (496)
+ .|.++..+|..|.|+.|..+.+...+. ..++.|+.++.+++.++..|.-|++.+.+ ...+++.||++-
T Consensus 459 ~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~-~~~~~~~gd~ie 534 (537)
T 3izy_P 459 TEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDE-EKIEFKVGDAII 534 (537)
T ss_dssp CSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSS-SCSSCSCCCEEE
T ss_pred CCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceEcCCCEEEEEEcC-cccCCCCCCEEE
Confidence 1 578999999999999999999998774 56888999999999999999999999986 124799999874
No 251
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.72 E-value=0.0044 Score=61.47 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
.++-.++++|+.|||||||++.|.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 45678999999999999999998754
No 252
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.34 E-value=0.011 Score=53.98 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=45.8
Q ss_pred CCeEEEEEeCCCC-cccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEeeccC
Q 010985 141 ETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~~~i~liDtpG~-~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~-~~~~~ivviNK~D~ 215 (496)
..+.+.|+|||+. ... .+...+..+|.+|+++.++.... ..+...+..+..+ +.+ +.+++|+.|.
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~-~~vv~N~~~~ 132 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALAL-------DALMLTIETLQKLGNNR-FRILLTIIPP 132 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHH-------HHHHHHHHHHHHTCSSS-EEEEECSBCC
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhH-------HHHHHHHHHHHhccCCC-EEEEEEecCC
Confidence 4578999999997 443 33445678999999998876432 2344555566664 556 7899999996
No 253
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.23 E-value=0.019 Score=60.98 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=67.9
Q ss_pred CCeEEEEE--EEEc-cCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEEcCccccccCCCCeEEEEeccCC-ccCc
Q 010985 293 GPFRMPII--DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDI 367 (496)
Q Consensus 293 ~p~~~~i~--~~~~-~~G~v~~g~v~~G~l~~g~~v~~~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~~~l~~~~-~~~i 367 (496)
.|..+.|. .+|+ ..|.++..+|..|.|+.|..+.+ +.+ ...+|.||+++++++.++..|+-|++.+.+.. ..++
T Consensus 462 ~~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~ 540 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTI 540 (594)
T ss_dssp CCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTB
T ss_pred eeEEEEEecceEEcCCCCeEEEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCC
Confidence 45556554 5773 45889999999999999999998 555 67799999999999999999999999998632 2578
Q ss_pred ceeeEEecC
Q 010985 368 LSGFVLSSV 376 (496)
Q Consensus 368 ~~G~vl~~~ 376 (496)
+.||+|-..
T Consensus 541 ~~~d~~~~~ 549 (594)
T 1g7s_A 541 HEGDTLYVD 549 (594)
T ss_dssp CTTCEEEEC
T ss_pred CCCCEEEEE
Confidence 999998653
No 254
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.19 E-value=0.0016 Score=63.26 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++-.++++|++|+|||||+|.|+
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHhc
Confidence 45689999999999999999995
No 255
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.66 E-value=0.0095 Score=57.70 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
+..++++|++|+|||||+|.|+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999996
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.43 E-value=0.0092 Score=54.24 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
..++..|+|+|++|||||||++.|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999988754
No 257
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.42 E-value=0.0082 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
+++++|++|||||||++.|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997544
No 258
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.37 E-value=0.025 Score=54.59 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=42.2
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEeeccC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~----~~~~~ivviNK~D~ 215 (496)
..+.+.|||||+.... ..+...+..||.+|+|+.++.... ..+...+..+..+ +++.+-+|+|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~-~~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVC-GGFAAPLQHADQAVVVTANDFDSI-------YAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCC-GGGGGGGGTCSEEEEEECSSHHHH-------HHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccch-HHHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 3578999999985432 223345678999999998765321 1333344444442 34433389999984
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.36 E-value=0.007 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.234 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
++..++|+|+.|||||||++.|+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457899999999999999999754
No 260
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.28 E-value=0.01 Score=52.55 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
+..++|+|++|||||||++.|+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999754
No 261
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.99 E-value=0.018 Score=50.41 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=24.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.++..|+++|++|||||||...|....|.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 34568999999999999999998766564
No 262
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.98 E-value=0.015 Score=52.31 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCc
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQV 92 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i 92 (496)
.++..|+++|++|||||||++.|....|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 345789999999999999999998766654
No 263
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.92 E-value=0.016 Score=52.19 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
++-.++++|++|||||||++.|...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4557899999999999999999754
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.91 E-value=0.014 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=21.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
.++-.++++|++|||||||++.|...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999643
No 265
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.84 E-value=0.018 Score=52.00 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=23.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
..++..|+|+|++|+|||||+++|+...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3456789999999999999999997543
No 266
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.80 E-value=0.017 Score=52.26 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=23.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
+++..|+|+|+.|||||||++.|....+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556899999999999999999976543
No 267
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.61 E-value=0.018 Score=50.27 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
..|+++|++|||||||.+.|....+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999776664
No 268
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.59 E-value=0.018 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 010985 67 NVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
.++++|+.|||||||++.|+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4799999999999999999743
No 269
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.57 E-value=0.019 Score=51.99 Aligned_cols=29 Identities=24% Similarity=0.030 Sum_probs=22.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
...++-.++|+|+.|||||||++.|....
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34456679999999999999999997543
No 270
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.54 E-value=0.02 Score=52.01 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=22.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
.++.-|+++|++|||||||++.|+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 356789999999999999999997543
No 271
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.47 E-value=0.023 Score=52.26 Aligned_cols=29 Identities=17% Similarity=0.054 Sum_probs=22.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
...++-.++|+|+.|||||||++.|+...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34566789999999999999999997543
No 272
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.43 E-value=0.019 Score=56.78 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+-.++++|++|+|||||+|.|+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCEEEEECCCCccHHHHHHHHhc
Confidence 45789999999999999999964
No 273
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.41 E-value=0.026 Score=52.56 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCc
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQV 92 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~i 92 (496)
...|+|+|++|||||||++.|....|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4689999999999999999998666654
No 274
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.41 E-value=0.021 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
++..|+++|++|||||||++.|...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998643
No 275
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.37 E-value=0.019 Score=52.69 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
.++-.++|+|+.|||||||++.|+...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345678999999999999999997543
No 276
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.36 E-value=0.26 Score=49.99 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=22.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++..-|+|+|..++|||+|+|.|+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHH
Confidence 55778889999999999999998864
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.30 E-value=0.032 Score=49.29 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=23.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.+..|+++|.++|||||+...|....|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999765554
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.28 E-value=0.024 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=19.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++--++++|++|||||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45678999999999999999753
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.17 E-value=0.03 Score=48.57 Aligned_cols=24 Identities=17% Similarity=-0.011 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
.|+++|.+||||||+...|....|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976655
No 280
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.14 E-value=0.031 Score=52.16 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=24.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.++..|+|+|+.+||||||++.|....|.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 34568999999999999999999876664
No 281
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.03 E-value=0.035 Score=48.16 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
+++-.++++|+.|||||||++.|...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45567999999999999999999654
No 282
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.98 E-value=0.032 Score=50.13 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
...|+|+|.+|||||||...|....|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999766564
No 283
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.98 E-value=0.033 Score=48.27 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
..|+++|.+||||||+...| ...|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 46899999999999999999 66664
No 284
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.98 E-value=0.029 Score=54.25 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=23.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
...++-.++|+|++|||||||++.|+..
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3456678999999999999999999754
No 285
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.96 E-value=0.038 Score=49.65 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+...|+++|.+||||||+...|....|.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4568999999999999999999866664
No 286
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.89 E-value=0.026 Score=50.96 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=23.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
..++..|+++|++|||||||.+.|....
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3456779999999999999999997544
No 287
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.84 E-value=0.0077 Score=62.17 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.....|+++|.++|||||+..+|..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999853
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.83 E-value=0.046 Score=49.10 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=22.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
.++..|+++|++|||||||...|....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999886443
No 289
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.80 E-value=0.035 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
..++++|++|||||||++.|....
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 468999999999999999997533
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.78 E-value=0.046 Score=48.45 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=23.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
....|+++|.+||||||+...|....|.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3467999999999999999999765554
No 291
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.78 E-value=0.038 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=22.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
..|+|+|++||||||+.+.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976666
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.71 E-value=0.039 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++-.++++|+.|||||||++.|+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 3456899999999999999999863
No 293
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.70 E-value=0.047 Score=50.56 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=48.2
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
..+.+.|||||+.... .+...+..+|.+|+|+.++.... .........+..++++.+.+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSI-------KTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHH-------HHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4688999999986543 34455678999999999875432 234445566777788778899999984
No 294
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.69 E-value=0.043 Score=53.32 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=24.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
..++..|+|+|+.|||||||++.|....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4667899999999999999999887643
No 295
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.61 E-value=0.045 Score=49.65 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+|+|.|.++|||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999766665
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.59 E-value=0.045 Score=49.36 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=23.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
...+...|+|+|.++||||||.+.|...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3445678999999999999999998654
No 297
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.58 E-value=0.044 Score=51.41 Aligned_cols=30 Identities=17% Similarity=-0.046 Sum_probs=25.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCc
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQV 92 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~i 92 (496)
.++..|+|+|+.|||||||+..|....|..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 345789999999999999999997666653
No 298
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.57 E-value=0.045 Score=48.90 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.|+|.|.+||||||+...|....+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999766554
No 299
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.57 E-value=0.045 Score=48.44 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHH
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..+++..|+++|.+||||||+...|..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344578899999999999999998853
No 300
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.56 E-value=0.045 Score=49.92 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=24.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
++...|+++|.++|||||+...|....+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 34578999999999999999999776664
No 301
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.48 E-value=0.037 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.217 Sum_probs=20.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 345678999999999999999885
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.47 E-value=0.029 Score=51.75 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=17.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++..++++|+.|||||||++.|.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999986
No 303
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.44 E-value=0.038 Score=50.27 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
++-.++++|+.|||||||++.|..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999999864
No 304
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.43 E-value=0.088 Score=48.37 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=48.0
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
..+.+.|+|+|+... ..+...+..+|.+|+|+.+..... ..+...+..+...+.+.+-+|+||.|.
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCL-------TDTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHH-------HHHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccH-------HHHHHHHHHHHhCCCceEEEEEecCCc
Confidence 357799999998654 345566788999999998875422 234555566666677767889999996
No 305
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.41 E-value=0.045 Score=48.28 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
...++++|+.|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999963
No 306
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.40 E-value=0.053 Score=47.77 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
..+|+++|.+||||||+...|....|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999766664
No 307
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.39 E-value=0.057 Score=48.53 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+..|++.|.++|||||+...|....+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999765554
No 308
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.38 E-value=0.054 Score=48.10 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+...|+++|.++|||||+...|....|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999766664
No 309
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.38 E-value=0.039 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.148 Sum_probs=20.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++-.++|+|+.|||||||++.|.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45578999999999999999884
No 310
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.37 E-value=0.038 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+-.++++|++|+|||||+|.|..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 45789999999999999999953
No 311
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.35 E-value=0.041 Score=51.27 Aligned_cols=21 Identities=33% Similarity=0.265 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll 86 (496)
-.++++|+.|||||||++.|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999885
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.33 E-value=0.055 Score=47.87 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
...|++.|.++|||||+...|....|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999998766664
No 313
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.31 E-value=0.051 Score=49.33 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=22.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+|+|+|.++|||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999766664
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.30 E-value=0.046 Score=48.77 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q 010985 68 VVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
|+|+|+.|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 315
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.27 E-value=0.051 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.+|+|+|.+||||||+.+.|.. .|.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCC
Confidence 3799999999999999999875 553
No 316
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.25 E-value=0.047 Score=48.83 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 010985 67 NVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
.++++|+.|+|||||++.|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988643
No 317
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.24 E-value=0.13 Score=48.31 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=45.3
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
..+.+.|||||+...........+..+|.+|+|+.+..... ..+...+..+...+++.+-+|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTA-------VIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCH-------HHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchH-------HHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56889999999965432222222336899999998876532 234555566666788844489999884
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.21 E-value=0.044 Score=48.39 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
...|++.|.+||||||+...|....+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999976555
No 319
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.17 E-value=0.049 Score=47.61 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..|+++|.++|||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 320
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.16 E-value=0.065 Score=47.44 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH-hC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFL-SG 90 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~-~g 90 (496)
+..+|+++|.+||||||+...|... .|
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4568999999999999999998765 34
No 321
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.14 E-value=0.047 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 355688999999999999999885
No 322
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.10 E-value=0.046 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 345678999999999999999884
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.10 E-value=0.027 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.1
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll 86 (496)
..++|+|+.|||||||++.|+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999986
No 324
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.08 E-value=0.051 Score=48.93 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
..|+++|.+||||||+.+.|.. .|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 4799999999999999999865 554
No 325
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.06 E-value=0.056 Score=48.29 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.+...|+|+|.++|||||+...|... |.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~ 33 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GY 33 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CC
Confidence 44578999999999999999988755 54
No 326
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.06 E-value=0.069 Score=49.73 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+..+|++.|.++|||||+...|....|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5679999999999999999999766664
No 327
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.05 E-value=0.062 Score=52.33 Aligned_cols=29 Identities=31% Similarity=0.250 Sum_probs=24.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
.+...-|+|+|++|||||||++.|....+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45567899999999999999998876543
No 328
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.02 E-value=0.062 Score=46.94 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
..|.++|.+||||||+...|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999975544
No 329
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.99 E-value=0.046 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.199 Sum_probs=19.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++-.++|+|+.|||||||++.|.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 44568999999999999999884
No 330
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.99 E-value=0.046 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++-.++|+|+.|||||||++.|.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999999884
No 331
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.99 E-value=0.055 Score=50.70 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=24.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
......|+++|.+||||||+...|....+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34557899999999999999999976554
No 332
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.95 E-value=0.056 Score=47.76 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
..|++.|.+||||||+...|....+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999976554
No 333
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.94 E-value=0.054 Score=48.52 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
++..|++.|.++|||||+.+.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999987544
No 334
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.91 E-value=0.072 Score=51.56 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=23.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
.++..|+|+|+.|||||||++.|....+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999976543
No 335
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.85 E-value=0.11 Score=48.74 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=47.5
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
..+.+.|||+|+... ..+...+..+|.+|+|+.+..... ..+...+..+...+.+.+-+|+|+.|.
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSI-------TDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHH-------HHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 357899999998654 445556778999999998765422 234455556666677767789999996
No 336
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.84 E-value=0.05 Score=51.54 Aligned_cols=24 Identities=33% Similarity=0.210 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++++|+.|||||||++.|.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 455678999999999999999885
No 337
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.79 E-value=0.079 Score=47.47 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=24.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
......|+++|.++|||||+...|....|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344568999999999999999999765554
No 338
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.78 E-value=0.066 Score=49.09 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=23.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+...|+++|.+||||||+...|....|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999766664
No 339
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.78 E-value=0.066 Score=48.16 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=22.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
..++..|+|+|.+|||||||++.|...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999988653
No 340
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.77 E-value=0.054 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++-.++|+|+.|||||||++.|.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999998853
No 341
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.76 E-value=0.053 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++-.++|+|+.|||||||++.|.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455789999999999999999864
No 342
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.75 E-value=0.059 Score=48.56 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
+.+..|++.|.++|||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998644
No 343
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.75 E-value=0.074 Score=48.43 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=23.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+..+|+++|.++|||||+...|....|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4578999999999999999999766664
No 344
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.74 E-value=0.052 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345678999999999999999885
No 345
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.73 E-value=0.052 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=20.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++++|+.|||||||++.|.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHh
Confidence 345678999999999999999885
No 346
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.72 E-value=0.055 Score=51.11 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=20.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345678999999999999999884
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.70 E-value=0.062 Score=48.48 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
+++..|++.|.++|||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998654
No 348
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.69 E-value=0.068 Score=46.92 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=23.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
....|+++|.+||||||+...|....|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999755553
No 349
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.65 E-value=0.066 Score=47.67 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
...|++.|.++|||||+...|....|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999776664
No 350
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.64 E-value=0.052 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.200 Sum_probs=20.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999999885
No 351
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.63 E-value=0.085 Score=47.24 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=24.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.....|++.|.++|||||+...|....|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 34568999999999999999999766664
No 352
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.62 E-value=0.058 Score=50.98 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=20.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHH
Confidence 455678999999999999999884
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.62 E-value=0.067 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
...++++|..|||||||+.+|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999963
No 354
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.61 E-value=0.077 Score=48.12 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+|++.|.++|||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999766664
No 355
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.61 E-value=0.061 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+..++++|++|+|||||+.++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998853
No 356
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.60 E-value=0.058 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
..++-.++++|++|||||||+..|+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3456678999999999999999886
No 357
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.59 E-value=0.056 Score=50.31 Aligned_cols=23 Identities=43% Similarity=0.426 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++-.++++|+.|||||||++.|.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45578999999999999999885
No 358
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.59 E-value=0.06 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++-.++|+|+.|||||||++.|.+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999999863
No 359
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.57 E-value=0.047 Score=54.21 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+++-.++|+|+.|||||||++.|+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999999963
No 360
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.55 E-value=0.072 Score=48.55 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=22.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..++-.++|+|+++||||||+..|+.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44566889999999999999999863
No 361
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.50 E-value=0.068 Score=46.74 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+|+|+|.++|||||+...|....|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999999766664
No 362
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.46 E-value=0.063 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.198 Sum_probs=20.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 345678999999999999999884
No 363
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.44 E-value=0.06 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++++|+.|||||||++.|.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 345578999999999999999885
No 364
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.44 E-value=0.075 Score=50.98 Aligned_cols=27 Identities=41% Similarity=0.348 Sum_probs=22.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
..+...|+|+|+++||||||.+.|...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999988643
No 365
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.44 E-value=0.072 Score=46.73 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+++..|+++|.++|||||+.+.|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998854
No 366
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.41 E-value=0.064 Score=50.93 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 455678999999999999999885
No 367
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.35 E-value=0.088 Score=45.46 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+|++.|.++|||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999998765553
No 368
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.25 E-value=0.069 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 345678999999999999999884
No 369
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.20 E-value=0.08 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++-.++|+|++|||||||++.|+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4556899999999999999999963
No 370
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.20 E-value=0.075 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++-.++++|++|+|||||+..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999985
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.16 E-value=0.081 Score=48.27 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=23.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
...|+++|.+||||||+...|....+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999877664
No 372
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.16 E-value=0.11 Score=45.68 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
...|++.|.++|||||+...|....|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999766664
No 373
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.15 E-value=0.067 Score=51.01 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=20.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 345678999999999999999885
No 374
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.10 E-value=0.091 Score=46.13 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
-.+|+|+.+||||||+.+|.+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999976554
No 375
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.08 E-value=0.069 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++-.++++|+.|||||||++.|.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 44578999999999999999884
No 376
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.07 E-value=0.099 Score=48.81 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=23.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
.....|+|.|.++|||||+...|....|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999876566
No 377
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.06 E-value=0.093 Score=51.88 Aligned_cols=22 Identities=36% Similarity=0.288 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
-.++|+|++|||||||++.|+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3899999999999999999863
No 378
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.98 E-value=0.13 Score=47.03 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=25.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
..++...|.++|+|||||+|....|....|.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3445566788999999999999999877665
No 379
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.97 E-value=0.049 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.+++-.++|+|+.|||||||++.|+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHH
Confidence 3456789999999999999999885
No 380
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.91 E-value=0.076 Score=46.56 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=18.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
...|++.|.+||||||+...|....|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46799999999999999999865544
No 381
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.90 E-value=0.047 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++-.++++|+.|||||||++.|+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999999999985
No 382
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.87 E-value=0.3 Score=46.62 Aligned_cols=66 Identities=8% Similarity=0.093 Sum_probs=48.4
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
.+.+.|||||..-... .+...+..+|.+|+|+.+..... ....+.+..+...+.+.+-+|+||+|.
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~-------~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTL-------KEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBH-------HHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 4669999999975442 23334567999999999886532 345566677777888767789999996
No 383
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.85 E-value=0.1 Score=49.97 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
.....|+++|++|||||||...|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999997655
No 384
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.79 E-value=0.083 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.7
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
+-.++++|+.|||||||++.|.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999885
No 385
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.77 E-value=0.058 Score=56.09 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.+.+++|+|++|||||||+++|+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34569999999999999999985
No 386
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.76 E-value=0.11 Score=47.08 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+|+++|+|||||+|....|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 6899999999999999999877765
No 387
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.74 E-value=0.11 Score=44.89 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.-+|++.|.++|||||+...|....|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 358999999999999999988765564
No 388
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.71 E-value=0.077 Score=52.64 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
.-+++|+|+.|||||||++.|.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999976543
No 389
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.68 E-value=0.077 Score=48.84 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=24.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
..+++.-|+|.|..|||||||++.|....|
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~~g 45 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKN 45 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhccC
Confidence 345678899999999999999999875533
No 390
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.66 E-value=0.09 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 455678999999999999999884
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.65 E-value=0.11 Score=47.97 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=23.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
..+.|+|.|+++|||||+...|....|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999766664
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.63 E-value=0.1 Score=47.34 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
...|+|.|.+||||||+.+.|.. .|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 46899999999999999998864 553
No 393
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.62 E-value=0.12 Score=47.40 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.|++.|.++|||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999765553
No 394
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.57 E-value=0.14 Score=47.12 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=23.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
+.+..|++.|.+||||||+++.|....+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999999976554
No 395
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.57 E-value=0.091 Score=46.23 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
..|+|+|.++|||||+...|....|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999998766554
No 396
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.55 E-value=0.094 Score=49.10 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
+.+|+|+|.+||||||+...|....|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 468999999999999999999776665
No 397
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.53 E-value=0.1 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
+...++|+|..|||||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3567899999999999999999743
No 398
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.49 E-value=0.099 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
.|++.|.++|||||+...|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999986543
No 399
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.42 E-value=0.12 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
.|++.|.++|||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999987554
No 400
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.39 E-value=0.16 Score=45.41 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=24.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
....+..|++.|.++|||||+.+.|....|.
T Consensus 8 ~~~~~~iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 8 HHHHHMVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3456789999999999999999998765464
No 401
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.34 E-value=0.048 Score=49.25 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 010985 67 NVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.|+|.|.+|||||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 402
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.32 E-value=0.13 Score=47.27 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
....+|+++|.++|||||+...|....+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34578999999999999999999766664
No 403
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.31 E-value=0.096 Score=51.74 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=29.7
Q ss_pred HHHHHHHHHc-CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcC
Q 010985 192 REHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 240 (496)
Q Consensus 192 ~e~~~~~~~~-~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~ 240 (496)
+.-+.+++++ .-|++++ +|-+....+.....++.+.+..+.++.|
T Consensus 144 ~QRValArAL~~~P~lLL----LDEPts~LD~~~r~~l~~~l~~~~~~~g 189 (359)
T 3fvq_A 144 QQRAALARALAPDPELIL----LDEPFSALDEQLRRQIREDMIAALRANG 189 (359)
T ss_dssp HHHHHHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEE----EeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 3444455543 4565654 6988777888777777777777777654
No 404
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.29 E-value=0.1 Score=51.66 Aligned_cols=25 Identities=28% Similarity=0.101 Sum_probs=21.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++-.++|+|+.|||||||++.|..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 4556789999999999999998853
No 405
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.26 E-value=0.13 Score=52.10 Aligned_cols=26 Identities=31% Similarity=0.184 Sum_probs=21.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
+++-.++|+|++|||||||++.|+..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 34457999999999999999999743
No 406
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.26 E-value=0.12 Score=44.69 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
..|++.|.+||||||+...|....|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999766664
No 407
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.15 E-value=0.14 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.|+|+|+++||||||...|....+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 5899999999999999999765553
No 408
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.09 E-value=0.12 Score=48.62 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
...|+++|.+||||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998643
No 409
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.00 E-value=0.1 Score=51.44 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=28.8
Q ss_pred HHHHHHHHc-CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcC
Q 010985 193 EHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 240 (496)
Q Consensus 193 e~~~~~~~~-~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~ 240 (496)
.-+.+++++ .-|++++ +|-+....+....+++.+.++++.++.|
T Consensus 152 QRvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 196 (355)
T 1z47_A 152 QRVALARALAPRPQVLL----FDEPFAAIDTQIRRELRTFVRQVHDEMG 196 (355)
T ss_dssp HHHHHHHHHTTCCSEEE----EESTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEE----EeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 334444443 4565654 6988777888777778777777766544
No 410
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.92 E-value=0.21 Score=46.50 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.7
Q ss_pred EEEEecCCCChHHHHHHHHHHh
Q 010985 68 VVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
++++|++|+|||||+.++....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999987544
No 411
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.92 E-value=0.13 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEecCCCChHHHHHHHHHHhC
Q 010985 68 VVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
++++|++|+|||||+++|....+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 99999999999999999976544
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.88 E-value=0.14 Score=46.26 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++..|+++|.+||||||+...|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
No 413
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.84 E-value=0.16 Score=46.85 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=24.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
..+...|+|+|.++|||||+...|....|.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345578999999999999999998766663
No 414
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.71 E-value=0.23 Score=45.21 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
....+.+.|++|+|||||+.++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999885
No 415
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.59 E-value=0.12 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++-.++++|+.|||||||++.|.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHH
Confidence 44578999999999999999885
No 416
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.51 E-value=0.15 Score=43.56 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
-.+|+|+.++|||||+.+|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 34899999999999999996543
No 417
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.49 E-value=0.13 Score=50.76 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=28.8
Q ss_pred HHHHHHHHc-CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcC
Q 010985 193 EHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 240 (496)
Q Consensus 193 e~~~~~~~~-~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~ 240 (496)
.-+.+++++ .-|++++ +|-+....+....+++.+.+.++.++.|
T Consensus 140 QRvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (359)
T 2yyz_A 140 QRVALARALVKQPKVLL----FDEPLSNLDANLRMIMRAEIKHLQQELG 184 (359)
T ss_dssp HHHHHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEE----EECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 334444443 4565654 6988777888777788887877766544
No 418
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.47 E-value=0.13 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+++-.++|+|+.|||||||++.|+.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3677899999999999999998864
No 419
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.25 E-value=0.16 Score=46.13 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++-.++++|++|+|||||+..|+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 44678999999999999999886
No 420
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.20 E-value=0.15 Score=50.54 Aligned_cols=25 Identities=28% Similarity=0.138 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++-.++++|+.|||||||++.|.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhc
Confidence 3455789999999999999998853
No 421
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.11 E-value=0.37 Score=45.55 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=45.7
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
.+.+.|||||+.-... .+...+..+|.+|+|+.+..... ....+.+..+...+.+.+-+|+|+.|.
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNK-------DEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCH-------HHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 4679999999965432 22223457899999999876532 245555566666787744589999996
No 422
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.06 E-value=0.21 Score=48.47 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..+.+.|+|++|||||.-++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4468999999999999988853
No 423
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.06 E-value=0.2 Score=47.37 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEecCCCChHHHHHHHHHHh
Q 010985 68 VVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
++++|++|+|||||+.+|....
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999997544
No 424
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.05 E-value=0.15 Score=50.62 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=30.4
Q ss_pred CchHHHHHHHHH-cCCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcC
Q 010985 189 GQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 240 (496)
Q Consensus 189 ~~t~e~~~~~~~-~~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~ 240 (496)
+|-.+. .++++ ..-|++++ +|-+....+.....++.+.++++.++.|
T Consensus 145 Gq~QRv-alArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 192 (372)
T 1v43_A 145 GQRQRV-AVARAIVVEPDVLL----MDEPLSNLDAKLRVAMRAEIKKLQQKLK 192 (372)
T ss_dssp SCHHHH-HHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHhcCCCEEE----EcCCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 444443 44444 34565654 6988778888777788888877766544
No 425
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.05 E-value=0.15 Score=50.70 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=29.1
Q ss_pred HHHHHHHHHc-CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcC
Q 010985 192 REHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 240 (496)
Q Consensus 192 ~e~~~~~~~~-~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~ 240 (496)
+.-+.+++++ .-|++++ +|-+....+.....++.+.+..+.++.|
T Consensus 139 rQRVaiArAL~~~P~lLL----LDEPts~LD~~~~~~l~~~l~~l~~~~g 184 (381)
T 3rlf_A 139 RQRVAIGRTLVAEPSVFL----LDEPLSNLDAALRVQMRIEISRLHKRLG 184 (381)
T ss_dssp HHHHHHHHHHHHCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCEEE----EECCCcCCCHHHHHHHHHHHHHHHHhCC
Confidence 3333444443 3355654 7988788888777788888887776655
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.98 E-value=0.2 Score=49.79 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
..++..++++|++|+|||||+..|....
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455688999999999999999997543
No 427
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=89.78 E-value=0.64 Score=44.55 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=48.0
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~~~~ivviNK~D~ 215 (496)
.+.+.|||||+.-.... ....+..+|.+|+|+.+..... ....+.+..+...+++.+-+|+|+.|.
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTA-------KEVSLSMQRLEQAGVNIKGAILNGVIK 278 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCT-------THHHHHHHHHHHTTCCCCCEEEEECCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChH-------HHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 46799999999754322 2233467999999999876532 466677777777787745589999996
No 428
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.77 E-value=0.79 Score=42.61 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=41.8
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc------CCceEEEEEeecc
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVTKLLLVVNKMD 214 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~------~~~~~ivviNK~D 214 (496)
..+.+.|||||+..... +...+..||.+|+++.++.... ..+...+..+..+ +++.+-+|+|+.|
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~ 180 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYAL-------EGVAGLLATLEEVRAGLNPRLRLLGILVTMYD 180 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHH-------HHHHHHHHHHHHHHHHTCTTCEEEEEEEESBC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHH-------HHHHHHHHHHHHHHHHhCCCceEEEEEEEeEC
Confidence 56889999999975433 3345567999999999875422 1222333333321 3452248999998
Q ss_pred C
Q 010985 215 D 215 (496)
Q Consensus 215 ~ 215 (496)
.
T Consensus 181 ~ 181 (257)
T 1wcv_1 181 G 181 (257)
T ss_dssp T
T ss_pred C
Confidence 5
No 429
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.74 E-value=0.21 Score=47.53 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.....|+|.|.++|||||+.+.|. ..|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCC
Confidence 345789999999999999999887 5554
No 430
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.69 E-value=0.23 Score=45.65 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=46.0
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEeeccC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~--~~~~ivviNK~D~ 215 (496)
.+.+.|+|||+.... .+...+..+|.+|+++.++.... ..+...+..+...+ .+.+-+|+|+.|.
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~v~N~~~~ 184 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSL-------RRAGQLLKLCKEFEKPISRIEIILNRADT 184 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHH-------HHHHHHHHHHHTCSSCCSCEEEEEESTTS
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhCCCccceEEEEecCCC
Confidence 577999999996543 34445778999999998875422 24455556666666 4457899999996
No 431
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.49 E-value=0.23 Score=44.33 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
.|+|.|.++|||||+...|....|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 7999999999999999999766664
No 432
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.48 E-value=0.24 Score=45.64 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=23.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
..+.+++++|.|+|||||+...|....|.
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ccccceeeECCCCCCHHHHHHHHHHHhCC
Confidence 35689999999999999999999766654
No 433
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.43 E-value=0.19 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++-.++++|+.|||||||++.|..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4556789999999999999998853
No 434
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.41 E-value=0.22 Score=47.62 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=21.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..++--++|+|++|+|||||+..|..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34556789999999999999998864
No 435
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.41 E-value=0.2 Score=49.65 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++..+|.++|..+|||||++.+|-
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHHH
Confidence 3557999999999999999998873
No 436
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.20 E-value=0.43 Score=44.35 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
...+.+.|++|+|||||+.+|...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998643
No 437
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.14 E-value=0.21 Score=49.56 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=19.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
.++ ++|+|+.|||||||++++.+.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHH
Confidence 454 569999999999999998644
No 438
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.04 E-value=0.13 Score=50.57 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=29.8
Q ss_pred HHHHHHHHHc-CCceEEEEEeeccCCCCCccHHHHHHHHHHHHHHHHhcC
Q 010985 192 REHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 240 (496)
Q Consensus 192 ~e~~~~~~~~-~~~~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~~ 240 (496)
+.-+.+++++ .-|++++ +|-+....+....+++.+.++++.++.|
T Consensus 133 ~QRvalAraL~~~P~lLL----LDEP~s~LD~~~~~~l~~~l~~l~~~~g 178 (348)
T 3d31_A 133 QQRVALARALVTNPKILL----LDEPLSALDPRTQENAREMLSVLHKKNK 178 (348)
T ss_dssp HHHHHHHHHTTSCCSEEE----EESSSTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEE----EECccccCCHHHHHHHHHHHHHHHHhcC
Confidence 3444555554 4465654 6988778888777788887877766544
No 439
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.00 E-value=0.24 Score=48.77 Aligned_cols=27 Identities=22% Similarity=0.021 Sum_probs=22.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
..++-+++|+|+.|+|||||++.|...
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999643
No 440
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.95 E-value=0.23 Score=44.76 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=21.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..++-.++++|++++|||||+..|+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34456789999999999999998864
No 441
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.68 E-value=0.16 Score=47.70 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=22.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
.++...|+|.|.+||||||+.+.|....
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456899999999999999999886443
No 442
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.58 E-value=0.22 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.249 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
-.++|+|+.|||||||++.|....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 567999999999999999987543
No 443
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.57 E-value=0.25 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
-.++++|++|+|||||++.+....+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4689999999999999999976553
No 444
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.50 E-value=0.21 Score=52.82 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+++-.++++|+.|||||||++.|++
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4566899999999999999998863
No 445
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.36 E-value=0.31 Score=42.31 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.6
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
...+.+.|++|+|||||+.++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999885
No 446
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.24 E-value=0.13 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=20.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++++|+.|||||||++.|.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh
Confidence 345578999999999999999885
No 447
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=88.24 E-value=1 Score=41.93 Aligned_cols=65 Identities=9% Similarity=0.210 Sum_probs=43.6
Q ss_pred CCeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEeeccC
Q 010985 141 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 215 (496)
Q Consensus 141 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~--~~~~ivviNK~D~ 215 (496)
..+.+.|||||+.... .+...+..||.+|+++.++.... ......+..+..++ .+ +.+|+|+.+.
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~-------~~~~~~~~~l~~~~~~~~-~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAV-------ESLDLFNFFVRKLNLFLP-IFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHH-------HHHHHHHHHHHTTTCCCC-EEEEEEEECT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHH-------HHHHHHHHHHHHHhccCC-EEEEEecccC
Confidence 3577999999996543 24455667999999999876432 12334445555554 34 6789999964
No 448
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.23 E-value=0.23 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
+++-.++++|+.|||||||++.|.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 456689999999999999999885
No 449
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.22 E-value=0.25 Score=45.24 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=21.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..++-.++|+|++++|||||+..|+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34556889999999999999998863
No 450
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=88.11 E-value=0.33 Score=45.05 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=43.1
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHcCC--------ceEEEEEeec
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV--------TKLLLVVNKM 213 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~~~--------~~~ivviNK~ 213 (496)
.+.+.|+|||+... ..+...+..+|.+|+|++++.... ..+...+..+...+. ..+-+|+|+.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSV-------RDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHH-------HHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHH-------HHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 68899999998554 245566778999999999875322 123333344433331 3477899999
Q ss_pred cC
Q 010985 214 DD 215 (496)
Q Consensus 214 D~ 215 (496)
|.
T Consensus 184 ~~ 185 (260)
T 3q9l_A 184 NP 185 (260)
T ss_dssp CH
T ss_pred Cc
Confidence 84
No 451
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.92 E-value=0.18 Score=48.29 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=19.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
+...|+|.|.++|||||+.+.|....|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346799999999999999999976444
No 452
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.75 E-value=3.4 Score=40.51 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=20.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++..+.|.|.+++|||||.-+|+
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 355678999999999999998875
No 453
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.67 E-value=1.3 Score=42.05 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=42.3
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCCCccccccCCCCchHHHHHHHHHc------CCceEEEEEeeccC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVTKLLLVVNKMDD 215 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~e~~~~~~~~t~e~~~~~~~~------~~~~~ivviNK~D~ 215 (496)
.+.+.|||||+..... +...+..+|.+|+++.+..... ......+..+..+ +++.+-+|+|+.|.
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEEST-------NNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCH-------HHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHH-------HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 5789999999976543 2334456999999999876532 1233333333332 55545589999996
No 454
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.65 E-value=1.3 Score=43.46 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
..++--+.|+|++++|||||+.+++
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 3455678999999999999998885
No 455
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.48 E-value=0.24 Score=52.57 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.+++-.++++|+.|||||||++.|+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4556789999999999999999885
No 456
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.48 E-value=0.23 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
+++-.++++|+.|||||||++.|.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 456689999999999999999885
No 457
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.48 E-value=0.31 Score=49.52 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=23.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
...++=+++|+|+.|+|||||++.|...
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3456678999999999999999998643
No 458
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.45 E-value=0.27 Score=51.42 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=22.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..++-.++++|+.|||||||++.|.+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35667899999999999999999864
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.38 E-value=0.31 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
..|+++|.++|||||+...|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998643
No 460
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.37 E-value=1.3 Score=40.49 Aligned_cols=24 Identities=25% Similarity=0.079 Sum_probs=18.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++.-+.+.|++|+||||++-.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHH
Confidence 345678899999999999875554
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.10 E-value=0.36 Score=44.53 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
+..|++.|..+|||||+++.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999997654
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.08 E-value=0.33 Score=50.71 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
+++-.++++|+.|||||||++.|.+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4556789999999999999999864
No 463
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.83 E-value=0.31 Score=43.82 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
-.+|+|+.++|||||+.+|.+..+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 458999999999999999975544
No 464
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.82 E-value=0.36 Score=45.66 Aligned_cols=26 Identities=19% Similarity=-0.008 Sum_probs=21.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..++-.++|+|++++|||||+..|+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34567889999999999999998863
No 465
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=86.77 E-value=0.21 Score=52.75 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.+++-.++++|+.|||||||++.|+
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHh
Confidence 3456789999999999999999875
No 466
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.70 E-value=0.44 Score=48.03 Aligned_cols=27 Identities=33% Similarity=0.222 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
....-|+++|.++|||||+..+|....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345678999999999999999986433
No 467
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.59 E-value=0.32 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++-.++++|+.|||||||++.|.+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 4567899999999999999999864
No 468
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.57 E-value=1.1 Score=43.41 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.+...|.+.|+||+|||+|..++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHH
Confidence 445789999999999999999885
No 469
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.45 E-value=1.5 Score=41.41 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.8
Q ss_pred CeEEEEEeCCCCcccHhHHhhccccCCEEEEEEeCCC
Q 010985 142 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 178 (496)
Q Consensus 142 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~ 178 (496)
.+.+.|||||+.. ...+...+..||.+|+++.+..
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 4779999999975 3445666788999999999864
No 470
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.35 E-value=0.38 Score=43.42 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=22.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
...|+|+|.++|||||+...|....|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 357999999999999999988765563
No 471
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.22 E-value=0.31 Score=51.09 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=23.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHh
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
.+++-.|+++|..|||||||.+.|....
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhh
Confidence 4466789999999999999999986543
No 472
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.18 E-value=0.44 Score=42.74 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.+..|+|+|++++|||||.-.|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999885
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.92 E-value=0.26 Score=52.15 Aligned_cols=25 Identities=32% Similarity=0.247 Sum_probs=21.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.+++-.++++|+.|||||||++.|+
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3456789999999999999999885
No 474
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=85.86 E-value=0.18 Score=50.72 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 61 NNKRHLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 61 ~~~~~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
...++ .++|+|+.|||||||+++|.+..+
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 34566 889999999999999999876554
No 475
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.75 E-value=0.51 Score=41.95 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll 86 (496)
..+.+.|++|+|||||+.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999885
No 476
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.47 E-value=0.38 Score=51.01 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=22.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
..++-.++++|+.|||||||++.|.+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhC
Confidence 35667899999999999999998854
No 477
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.41 E-value=0.55 Score=45.50 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
..|+|+|++++|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999965443
No 478
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.35 E-value=0.4 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=21.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.++-.++|+|+.|||||||++.|.+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999999853
No 479
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.28 E-value=2.7 Score=43.46 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
...+.+.|++|+|||||+.++...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998643
No 480
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.25 E-value=0.43 Score=41.28 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.5
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 010985 65 HLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
...+.+.|++|+|||||+..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999885
No 481
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.20 E-value=0.58 Score=45.71 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010985 66 LNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
..|+|+|+++||||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4789999999999999999976554
No 482
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.14 E-value=0.41 Score=43.99 Aligned_cols=26 Identities=27% Similarity=0.096 Sum_probs=19.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
+++.-|++.|.++|||||+++.|...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999998643
No 483
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.12 E-value=0.52 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=20.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++++|++++|||||+..++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445678999999999999987775
No 484
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.11 E-value=0.32 Score=56.62 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.+++-+|+|+|+.|||||||++.|+
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHh
Confidence 3456789999999999999999885
No 485
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.00 E-value=0.53 Score=42.75 Aligned_cols=25 Identities=32% Similarity=0.215 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
++.-|++.|.++|||||+++.|...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998643
No 486
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.99 E-value=0.37 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
.+++-.++|+|++|||||||++.|+.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcc
Confidence 34567899999999999999998874
No 487
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.87 E-value=0.57 Score=46.02 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=22.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010985 62 NKRHLNVVFIGHVDAGKSTTGGQILFL 88 (496)
Q Consensus 62 ~~~~~~i~i~G~~~aGKSTL~~~Ll~~ 88 (496)
..++-.+.|+|++++|||||+..|+..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999988643
No 488
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=84.83 E-value=0.47 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 010985 65 HLNVVFIGHVDAGKSTTGGQILFLS 89 (496)
Q Consensus 65 ~~~i~i~G~~~aGKSTL~~~Ll~~~ 89 (496)
..+|+++|.+|+|||||...|....
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999999998886443
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=84.65 E-value=0.54 Score=41.13 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.+.-|.+.|++|+|||||.-.|+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999999998886
No 490
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=84.65 E-value=0.087 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.180 Sum_probs=19.5
Q ss_pred EEEEecCCCChHHHHHHHHHHhC
Q 010985 68 VVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 68 i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
++|+|+.|||||||+.+|.+...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 47999999999999999976543
No 491
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.58 E-value=0.45 Score=50.51 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
++-.++|+|+.|||||||++.|.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999863
No 492
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=84.53 E-value=0.71 Score=42.01 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=24.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 91 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g~ 91 (496)
++.-|++.|.+||||||+++.|....+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4678999999999999999999876653
No 493
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.46 E-value=0.45 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010985 63 KRHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 63 ~~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
.++-.++|+|+.|||||||++.|.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 345678999999999999999885
No 494
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.41 E-value=3.4 Score=39.83 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=18.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++ .+.|.|++++|||||.-+++
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHH
Confidence 45 58999999999999986664
No 495
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.40 E-value=0.53 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
...+++|+|.+|+|||||++.|+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 496
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.36 E-value=0.45 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010985 67 NVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 67 ~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
-.+|+|+.|||||||+.+|.+..|
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 678999999999999999976544
No 497
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.13 E-value=0.5 Score=50.11 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010985 66 LNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 66 ~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
=.++|+|+.|||||||++.|.+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999998853
No 498
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.10 E-value=0.6 Score=45.50 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=22.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILFLSG 90 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~~~g 90 (496)
+...|+|+|++++|||||...|....+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 345799999999999999999865444
No 499
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=84.01 E-value=0.6 Score=43.11 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQILF 87 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll~ 87 (496)
++.-|++.|.++|||||+++.|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999854
No 500
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=83.98 E-value=0.39 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=19.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010985 64 RHLNVVFIGHVDAGKSTTGGQIL 86 (496)
Q Consensus 64 ~~~~i~i~G~~~aGKSTL~~~Ll 86 (496)
++-.++|+|+.|||||||++.++
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 45578999999999999998664
Done!