BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010986
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/497 (43%), Positives = 304/497 (61%), Gaps = 5/497 (1%)
Query: 1 MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
MI + + + KL ID+VQRLGV+Y F KEIEDEL+ + ++ ++LYT S+RFRLL
Sbjct: 62 MIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLL 121
Query: 61 RQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
R+ +SCDV +S+ ++VRG+L LY+A++L VHGE ILDEAI FTT H
Sbjct: 122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHH 181
Query: 121 LKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFN 180
L S+ + + L+E++ H +YL++Y + H++ LL+FAK+DFN
Sbjct: 182 L-SLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFN 240
Query: 181 LLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKI 240
+LQ H+KELS++ RWWKDLD KLPYARDR+VE YFW + GVY EP+Y+ GR +++K+
Sbjct: 241 MLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFW-ISGVYFEPQYSLGRKMLTKV 299
Query: 241 ICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEEL 300
I + S++DDT+D+Y T+EEL +T A++RWD D +P MK Y LL VY E + +
Sbjct: 300 IAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLV 359
Query: 301 AKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFL 360
A+ GR Y + YAK M + Y EAKW + Y PS EE+K+ AL + + SF+
Sbjct: 360 AEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFV 419
Query: 361 DMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVS 420
MGDI T E F+W PKII AS ICR +DDVA HKF+ +R SA+ECYM+++ V+
Sbjct: 420 GMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVT 479
Query: 421 EEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSY 480
+EA + + WKDLN +E LNLAR+ + +Y +G D YT
Sbjct: 480 AQEAYDVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVG 537
Query: 481 K-MKDQVALVLKDPVTF 496
K K + +L +P+
Sbjct: 538 KAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/496 (40%), Positives = 303/496 (61%), Gaps = 7/496 (1%)
Query: 1 MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
M+ + +++ L+LID ++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLL
Sbjct: 58 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLL 116
Query: 61 RQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
RQ IS ++ S+ ++V G+L+LYEA+H+ H + IL++A+ F+T H
Sbjct: 117 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 176
Query: 121 LKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDF 179
L+S + S L EQ+ H ++++ +Y ++ + LL+FAKLDF
Sbjct: 177 LESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 235
Query: 180 NLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK 239
NLLQ H++EL+ ++RWWKDLD T LPYARDR+VE YFWTL GVY EP+Y+ R+++ K
Sbjct: 236 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTL-GVYFEPQYSQARVMLVK 294
Query: 240 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 299
I +IS++DDTFDAYGT +EL +T+A++RWD N D LP MK Y +L +Y + E+E
Sbjct: 295 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 354
Query: 300 LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF 359
L+ GRS+ + +A + M+E++ Y E+ W EGY P V EY S AL + + T S+
Sbjct: 355 LSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSY 414
Query: 360 LDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVV 419
L M AT++ FEW+ K PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +
Sbjct: 415 LGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGI 473
Query: 420 SEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNS 479
S +EA WKD+N E P+LNLAR+ E Y +D YT+
Sbjct: 474 STKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHP 532
Query: 480 YK-MKDQVALVLKDPV 494
K +K + +L D +
Sbjct: 533 EKVLKPHIINLLVDSI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/496 (40%), Positives = 302/496 (60%), Gaps = 7/496 (1%)
Query: 1 MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
M+ + +++ L+LID ++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLL
Sbjct: 56 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLL 114
Query: 61 RQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
RQ IS ++ S+ ++V G+L+LYEA+H+ H + IL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDF 179
L+S + S L EQ+ H ++++ +Y ++ + LL+FAKLDF
Sbjct: 175 LESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 180 NLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK 239
NLLQ H++EL+ ++RWWKDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVK 292
Query: 240 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 299
I +IS++DDTFDAYGT +EL +T+A++RWD N D LP MK Y +L +Y + E+E
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 352
Query: 300 LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF 359
L+ GRS+ + +A + M+EV+ Y E+ W EGY P V EY S AL + + T S+
Sbjct: 353 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 412
Query: 360 LDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVV 419
L M AT++ FEW+ K PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +
Sbjct: 413 LGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGI 471
Query: 420 SEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNS 479
S +EA WKD+N E P+LNLAR+ E Y +D YT+
Sbjct: 472 STKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 480 YK-MKDQVALVLKDPV 494
K +K + +L D +
Sbjct: 531 EKVLKPHIINLLVDSI 546
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/496 (40%), Positives = 302/496 (60%), Gaps = 7/496 (1%)
Query: 1 MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
M+ + +++ L+LID ++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLL
Sbjct: 58 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLL 116
Query: 61 RQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
RQ IS ++ S+ ++V G+L+LYEA+H+ H + IL++A+ F+T H
Sbjct: 117 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 176
Query: 121 LKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDF 179
L+S + S L EQ+ H ++++ +Y ++ + LL+FAKLDF
Sbjct: 177 LESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 235
Query: 180 NLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK 239
NLLQ H++EL+ ++RWWKDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K
Sbjct: 236 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVK 294
Query: 240 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 299
I +IS++DDTFDAYGT +EL +T+A++RWD N D LP MK Y +L +Y + E+E
Sbjct: 295 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 354
Query: 300 LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF 359
L+ GRS+ + +A + M+EV+ Y E+ W EGY P V EY S AL + + T S+
Sbjct: 355 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 414
Query: 360 LDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVV 419
L M AT++ FEW+ K PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +
Sbjct: 415 LGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGI 473
Query: 420 SEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNS 479
S +EA WKD+N E P+LNLAR+ E Y +D YT+
Sbjct: 474 STKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP 532
Query: 480 YK-MKDQVALVLKDPV 494
K +K + +L D +
Sbjct: 533 EKVLKPHIINLLVDSI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/496 (40%), Positives = 302/496 (60%), Gaps = 7/496 (1%)
Query: 1 MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
M+ + +++ L+LID ++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLL
Sbjct: 43 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLL 101
Query: 61 RQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
RQ IS ++ S+ ++V G+L+LYEA+H+ H + IL++A+ F+T H
Sbjct: 102 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 161
Query: 121 LKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDF 179
L+S + S L EQ+ H ++++ +Y ++ + LL+FAKLDF
Sbjct: 162 LESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 220
Query: 180 NLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK 239
NLLQ H++EL+ ++RWWKDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K
Sbjct: 221 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVK 279
Query: 240 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 299
I +IS++DDTFDAYGT +EL +T+A++RWD N D LP MK Y +L +Y + E+E
Sbjct: 280 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 339
Query: 300 LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF 359
L+ GRS+ + +A + M+EV+ Y E+ W EGY P V EY S AL + + T S+
Sbjct: 340 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 399
Query: 360 LDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVV 419
L M AT++ FEW+ K PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +
Sbjct: 400 LGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGI 458
Query: 420 SEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNS 479
S +EA WKD+N E P+LNLAR+ E Y +D YT+
Sbjct: 459 STKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP 517
Query: 480 YK-MKDQVALVLKDPV 494
K +K + +L D +
Sbjct: 518 EKVLKPHIINLLVDSI 533
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/496 (39%), Positives = 302/496 (60%), Gaps = 7/496 (1%)
Query: 1 MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
M+ + +++ L+LID ++RLG++Y FEKEI++ L ++ N S+ ++L T +L+FRLL
Sbjct: 56 MLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQ-NSNCNDLCTSALQFRLL 114
Query: 61 RQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
RQ IS ++ S+ ++V G+L+LYEA+H+ H + IL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDF 179
L+S + S L EQ+ H ++++ +Y ++ + LL+FAKLDF
Sbjct: 175 LESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 180 NLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK 239
NLLQ H++EL+ ++RWWKDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVK 292
Query: 240 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 299
I +IS++DDTFDAYGT +EL +T+A++RWD N D LP MK Y +L +Y + E+E
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 352
Query: 300 LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF 359
L+ GRS+ + +A + M+EV+ Y E+ W EGY P V EY S AL + + T S+
Sbjct: 353 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 412
Query: 360 LDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVV 419
L M AT++ FEW+ K PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +
Sbjct: 413 LGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGI 471
Query: 420 SEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNS 479
S +EA WKD+N E P+LNLAR+ E Y +D YT+
Sbjct: 472 STKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 480 YK-MKDQVALVLKDPV 494
K +K + +L D +
Sbjct: 531 EKVLKPHIINLLVDSI 546
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 194/479 (40%), Positives = 294/479 (61%), Gaps = 6/479 (1%)
Query: 1 MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
M+ + +++ L+LID ++RLG++Y FEKEI++ L ++ N S+ ++L T +L+FRLL
Sbjct: 56 MLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQ-NSNCNDLCTSALQFRLL 114
Query: 61 RQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
RQ IS ++ S+ ++V G+L+LYEA+H+ H + IL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDF 179
L+S + S L EQ+ H ++++ +Y ++ + LL+FAKLDF
Sbjct: 175 LESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 180 NLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK 239
NLLQ H++EL+ ++RWWKDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVK 292
Query: 240 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 299
I +IS++DDTFDAYGT +EL +T+A++RWD N D LP MK Y +L +Y + E+E
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 352
Query: 300 LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF 359
L+ GRS+ + +A + M+EV+ Y E+ W EGY P V EY S AL + + T S+
Sbjct: 353 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 412
Query: 360 LDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVV 419
L M AT++ FEW+ K PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +
Sbjct: 413 LGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGI 471
Query: 420 SEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTN 478
S +EA WKD+N E P+LNLAR+ E Y +D YT+
Sbjct: 472 STKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 194/479 (40%), Positives = 293/479 (61%), Gaps = 6/479 (1%)
Query: 1 MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
M+ + +++ L+LID ++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLL
Sbjct: 56 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLL 114
Query: 61 RQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
RQ IS ++ S+ ++V G+L+LYEA+H+ H + IL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDF 179
L+S + S L EQ+ H ++++ +Y ++ + LL+FAKLDF
Sbjct: 175 LESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 180 NLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK 239
NLLQ H++EL+ ++RWWKDLD T LPYARDR+VE YF L GVY EP+Y+ R+++ K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSAL-GVYFEPQYSQARVMLVK 292
Query: 240 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 299
I +IS++DDTFDAYGT +EL +T+A++RWD N D LP MK Y +L +Y + E+E
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 352
Query: 300 LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF 359
L+ GRS+ + +A + M+EV+ Y E+ W EGY P V EY S AL + + T S+
Sbjct: 353 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 412
Query: 360 LDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVV 419
L M AT++ FEW+ K PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +
Sbjct: 413 LGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGI 471
Query: 420 SEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTN 478
S +EA WKD+N E P+LNLAR+ E Y +D YT+
Sbjct: 472 STKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 194/479 (40%), Positives = 293/479 (61%), Gaps = 6/479 (1%)
Query: 1 MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
M+ + +++ L+LID ++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLL
Sbjct: 56 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLL 114
Query: 61 RQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
RQ IS ++ S+ ++V G+L+LYEA+H+ H + IL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDF 179
L+S + S L EQ+ H ++++ +Y ++ + LL+FAKLDF
Sbjct: 175 LESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 180 NLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK 239
NLLQ H++EL+ ++RWWKDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVK 292
Query: 240 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 299
I +IS++DDTFDAYGT +EL +T+A++RWD N D LP MK Y +L +Y + E+E
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 352
Query: 300 LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF 359
L+ GRS+ + +A + M+EV+ Y E+ W EGY P V EY S AL + + T S+
Sbjct: 353 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 412
Query: 360 LDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVV 419
L M AT++ FEW+ K PKI+ AS I R++DD A+++ E+ RG I + +EC M+ + +
Sbjct: 413 LGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGI 471
Query: 420 SEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTN 478
S +EA WKD+N E P+LNLAR+ E Y +D YT+
Sbjct: 472 STKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 351 bits (900), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 193/479 (40%), Positives = 292/479 (60%), Gaps = 6/479 (1%)
Query: 1 MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
M+ + +++ L+LID ++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLL
Sbjct: 56 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLL 114
Query: 61 RQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
RQ IS ++ S+ ++V G+L+LYEA+H+ H + IL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDF 179
L+S + S L EQ+ H ++++ +Y ++ + LL+FAKLDF
Sbjct: 175 LESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 180 NLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK 239
NLLQ H++EL+ ++RWWKDLD T LPYARDR+VE YF L GVY EP+Y+ R+++ K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSAL-GVYFEPQYSQARVMLVK 292
Query: 240 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 299
I +IS++DDTFDAYGT +EL +T+A++RWD N D LP MK Y +L +Y + E+E
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE 352
Query: 300 LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF 359
L+ GRS+ + +A + M+EV+ Y E+ W EGY P V EY S AL + + T S+
Sbjct: 353 LSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY 412
Query: 360 LDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVV 419
L M AT++ FEW+ K PKI+ AS I R++DD A+++ E+ RG I + +EC M+ + +
Sbjct: 413 LGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGI 471
Query: 420 SEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTN 478
S +EA WKD+N E P+LNLAR+ E Y +D YT+
Sbjct: 472 STKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/488 (33%), Positives = 266/488 (54%), Gaps = 11/488 (2%)
Query: 13 LHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDS---DNLYTVSLRFRLLRQQRVKISC 69
L LID VQRLG+ Y+FE +I L + + G D +L+ +L FRLLRQ ++S
Sbjct: 68 LELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ 127
Query: 70 DVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVI 129
+ ++ + + +LSLYEA+ LA+ GE ILDEA VF +HLK + I
Sbjct: 128 EAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKI 187
Query: 130 SNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKE 189
LAEQ+ H + + Y + + ++ LL+ A LD+N++Q+ +Q++
Sbjct: 188 GKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRD 247
Query: 190 LSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDD 249
L + +RWW+ + + TKL +ARDR++E ++W VGV EP+Y+ R V+K+ +++IDD
Sbjct: 248 LRETSRWWRRVGLATKLHFARDRLIESFYWA-VGVAFEPQYSDCRNSVAKMFSFVTIIDD 306
Query: 250 TFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNE-AEEELAKQGRSYG 308
+D YGT +EL LFT+AV+RWD N + LP MK + L NE A + L +G +
Sbjct: 307 IYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENI- 365
Query: 309 IPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIA-VLPVVTASFLDMGDIAT 367
+PY + ++ + EAKWL P+ ++Y A +S + L ++ A F + +I
Sbjct: 366 LPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKK 425
Query: 368 KEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKA 427
+E+ E + K II+ +I RL +D+AS E RG ++V CYM+ +SEE A ++
Sbjct: 426 EEI-ENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATES 484
Query: 428 LWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYKM-KDQV 486
+ I WK +N +E +NLAR S Y +G D +T+ ++ + +V
Sbjct: 485 VMNLIDETWKKMN-KEKLGGSLFAKPFVETAINLARQSHCTYHNG-DAHTSPDELTRKRV 542
Query: 487 ALVLKDPV 494
V+ +P+
Sbjct: 543 LSVITEPI 550
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/488 (33%), Positives = 253/488 (51%), Gaps = 6/488 (1%)
Query: 1 MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQ-KLANDLGSDSDNLYTVSLRFRL 59
M+ VD I +L LID ++RLG++ FE+EI + L K + D +LY+ +LRFRL
Sbjct: 76 MLQEEVDSI-RRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRL 134
Query: 60 LRQQRVKISCDVXX-XXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTT 118
LRQ +S +V S++++ RG+L LYEA+ L+ GE L A F T
Sbjct: 135 LRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFAT 194
Query: 119 THLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLD 178
L+ + NL I+ +++ Y R + T+L+ AKLD
Sbjct: 195 KFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLD 254
Query: 179 FNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVS 238
FN++QA Q+EL + +RWW + +LP+ RDR+VE Y+WT GV ++ + RI+++
Sbjct: 255 FNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWT-TGVVERRQHGYERIMLT 313
Query: 239 KIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEE 298
KI L++ IDD FD YGT EEL LFT A++RWD LP M+ Y L NE
Sbjct: 314 KINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAY 373
Query: 299 ELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTAS 358
+ + PY ++ +I Y EAKW +G+ PS+EEY + SI +P+++
Sbjct: 374 DTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHL 433
Query: 359 FLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHV 418
F + D +E E + K I+ AS I RL DD+ + E +RG +P +V+CYM +
Sbjct: 434 FFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKN 493
Query: 419 VSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTN 478
SEEEA + + I WK +N E NLARM+++IY+ D +
Sbjct: 494 ASEEEAREHVRSLIDQTWKMMNKEMMTSSFSKYFVEVSA--NLARMAQWIYQHESDGFGM 551
Query: 479 SYKMKDQV 486
+ + +++
Sbjct: 552 QHSLVNKM 559
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 255 bits (651), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 158/497 (31%), Positives = 257/497 (51%), Gaps = 13/497 (2%)
Query: 8 EISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDN------LYTVSLRFRLLR 61
E +L LI ++ LG++ F+ EI++ L + N+ +N LY +L FRLLR
Sbjct: 53 EPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLR 112
Query: 62 QQRVKISCDVXXXXXXXXXX-XXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
Q IS DV AS+ + +GML LYEA+ L GE L+ A F T
Sbjct: 113 QHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKC 172
Query: 121 LKSMI---SRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKL 177
L+ + I NL I+H ++++ Y+R + + + AKL
Sbjct: 173 LQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKL 232
Query: 178 DFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILV 237
+FN++QA HQ+EL D++RWW L P KLP+ RDR+VE +FW VG++ ++ + R +
Sbjct: 233 NFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA-VGMFEPHQHGYQRKMA 291
Query: 238 SKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAE 297
+ II L ++IDD +D YGT +EL LFT+ KRWDT LP M+ Y + ++A
Sbjct: 292 ATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAA 351
Query: 298 EELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA 357
++ K+ + + Y ++++ +++ YF EAKW GY PS++EY ++A S+A +++
Sbjct: 352 YDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISP 411
Query: 358 SFLDMGDIA-TKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQ 416
++ + + V + + + I+ + I RL DD+ + FE RG +P ++CYMK+
Sbjct: 412 TYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKE 471
Query: 417 HVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRY 476
SEEEA + + I WKD+N G N+ R+++FIY G
Sbjct: 472 TNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAA-NIGRVAQFIYLHGDGFG 530
Query: 477 TNSYKMKDQVALVLKDP 493
K + +A +L +P
Sbjct: 531 VQHSKTYEHIAGLLFEP 547
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 149/490 (30%), Positives = 248/490 (50%), Gaps = 9/490 (1%)
Query: 12 KLHLIDAVQRLGVAYQFEKEIEDELQKL-------ANDLGSDSDNLYTVSLRFRLLRQQR 64
+L LID +QR+G++ F+ E ++ L + N + +LY+ SL FRLLR+
Sbjct: 53 QLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHG 112
Query: 65 VKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSM 124
+++ +V S+ ++ RG+L LYEA+ L GE L+ A F T L+
Sbjct: 113 FQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEK 172
Query: 125 ISRV-ISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFNLLQ 183
++ + +L +I + ++ Y + + +L+ A LD N++Q
Sbjct: 173 VNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQ 232
Query: 184 AAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICL 243
A Q+EL + RWW++ KLP+ARDR+VE YFW G+ ++ RI++ K+ L
Sbjct: 233 AQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWN-TGIIEPRQHASARIMMGKVNAL 291
Query: 244 ISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQ 303
I++IDD +D YGT EEL FT+ ++RWD N D LP M+ + L ++ ++ K+
Sbjct: 292 ITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKE 351
Query: 304 GRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMG 363
IPY +Q+ ++ Y EA+W G+ PS+EEY + +SI+ ++T F +
Sbjct: 352 KGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVT 411
Query: 364 DIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEE 423
D TKE + + K ++ S + RL DD+ + E RG +P +++CYM + SE E
Sbjct: 412 DSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE 471
Query: 424 AEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYKMK 483
A K + IA WK +N E G ++L RM++ +Y +G T +
Sbjct: 472 ARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIH 531
Query: 484 DQVALVLKDP 493
Q+ L +P
Sbjct: 532 QQMTRTLFEP 541
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 224 bits (571), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 163/519 (31%), Positives = 260/519 (50%), Gaps = 40/519 (7%)
Query: 12 KLHLIDAVQRLGVAYQFEKEIEDELQ---KLANDLG------SDSDNLYTVSLRFRLLRQ 62
+L ++D + RLG+ FEKEI++ L + N+ G + +L T +L FRLLR
Sbjct: 301 RLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRL 360
Query: 63 QRVKISC---DVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTT 119
R +S D +V ML+LY A+ LA GE ILDEA F T
Sbjct: 361 HRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATK 420
Query: 120 HL-----KSMISRVISN--NLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDD------- 165
+L KS S +N NL+++I++ Y +Y D
Sbjct: 421 YLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCV 480
Query: 166 -----LHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWT 220
+++E L+ KLDFN++Q+ HQ+E+ ++T W++D +P +AR+R +E YF
Sbjct: 481 YKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPL-FTFARERPLEFYFLV 539
Query: 221 LVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPA 280
G Y EP+Y R L +K+ CL +++DD +D YGT +EL LFTEAV+RWD + T+ LP
Sbjct: 540 AAGTY-EPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPD 598
Query: 281 CMKFIYNKLLGVYNEAEEELAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVE 339
MK Y + +E E K QGR + + ++ ++ +L Y+ EA+WL YVP+++
Sbjct: 599 YMKLCYQIYYDIVHEVAWEAEKEQGREL-VSFFRKGWEDYLLGYYEEAEWLAAEYVPTLD 657
Query: 340 EYKSVALRSIAVLPVVTASFLDM-GDIATKEVFEWVLKVPKIITASEN--ICRLLDDVAS 396
EY + SI ++ + L M G + ++E E V + + N I RL DD +
Sbjct: 658 EYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKT 717
Query: 397 HKFEQKRGHIPSAVECYMKQHV-VSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXX 455
+K E+ RG + S++ECYMK H +EEEA ++ + K+L E
Sbjct: 718 YKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELT-REFLKPDDVPFACK 776
Query: 456 GPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPV 494
+ R++ I++DG + ++KD + L +P+
Sbjct: 777 KMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPL 815
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 148/522 (28%), Positives = 252/522 (48%), Gaps = 41/522 (7%)
Query: 8 EISHKLHLIDAVQRLGVAYQFEKEIEDELQKL-----ANDLGSDSDN----LYTVSLRFR 58
++ +L +D V+RLG+ F++EI++ L + +G +N + ++ R
Sbjct: 269 DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLR 328
Query: 59 LLRQQRVKISCDVXXXXXXXXXXXXASMINNVRG---MLSLYEAAHLAVHGEVILDEAIV 115
+LR +S DV + RG ML++ +H++ GE I++EA +
Sbjct: 329 ILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKL 388
Query: 116 FTTTHLKSMISRV-------ISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDD--- 165
T +L++ + V N+ ++++ Y+ Y DD
Sbjct: 389 CTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWL 448
Query: 166 ---------LHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEV 216
+ +E L+ AKLDFN +Q+ HQ EL D+ RWWK T L + R+R+ E+
Sbjct: 449 GKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEI 507
Query: 217 YFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTD 276
YF ++ EP+++ R + +K ++DD +DA+G+ ++L LFTE+VKRWD ++ D
Sbjct: 508 YFSPASFIF-EPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVD 566
Query: 277 TLPACMKFIYNKLLGVYNE-AEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYV 335
+P MK + +N+ A+E +QGR + Y + + + Y EA+W + YV
Sbjct: 567 QMPQQMKICFVGFYNTFNDIAKEGRERQGRDV-LGYIQNVWKVQLEAYTKEAEWSEAKYV 625
Query: 336 PSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVA 395
PS EY A SIA+ VV S L G++ T EV + + + + RL++D
Sbjct: 626 PSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTK 685
Query: 396 SHKFEQKRGHIPSAVECYMKQHV-VSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 454
+++ E+ +G + SA++CYMK H +SEEEA + ++ + N ++LN E
Sbjct: 686 TYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNKIPDIYKR 745
Query: 455 XGPVLNLARMSEFIYEDGVDRYTNSYKM--KDQVALVLKDPV 494
V AR+ + Y G D T S+ M K+ V L PV
Sbjct: 746 L--VFETARIMQLFYMQG-DGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 142/512 (27%), Positives = 238/512 (46%), Gaps = 35/512 (6%)
Query: 12 KLHLIDAVQRLGVAYQFEKEIEDEL-------QKLANDLGSDS--DNLYTVSLRFRLLRQ 62
+L L+D ++ LG+ F++EI+ L + G DS +L T +L R LR
Sbjct: 249 RLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRM 308
Query: 63 QRVKISCDVXXXXXXXXXXXXASMINN---VRGMLSLYEAAHLAVHGEVILDEAIVFTTT 119
+S DV +S +R +++L+ A+ LA E +D+A F
Sbjct: 309 HGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEP 368
Query: 120 HLKSMISRVISNN--LAEQIQHXXXXXXXXXXXXXXXXYYLN------------MYSRDD 165
+L+ ++ IS N L ++I++ Y++ +Y
Sbjct: 369 YLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPS 428
Query: 166 LHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVY 225
L + L+ AKLDFN++Q+ HQ+EL +TRWWK+ + + + R R+ EVYF +
Sbjct: 429 LSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSSAT--- 484
Query: 226 CEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFI 285
EP+Y+ RI +KI CL L DD D + T +EL FTE VKRWDT++ +P CM+
Sbjct: 485 FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTC 544
Query: 286 YNKLLGVYNEAEEELAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSV 344
+ + E ++ K QGR + + ++ + Y E +WL+ GY+P+ EEY
Sbjct: 545 FKVWFKLMEEVNNDVVKVQGRDM-LAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKT 603
Query: 345 ALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRG 404
S+ + P L MG++ +V E V + RL +D +++ E+ RG
Sbjct: 604 YAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARG 663
Query: 405 HIPSAVECYMKQHV-VSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLAR 463
S + CYMK + +EE+A K + + K+ ++E + NL R
Sbjct: 664 QQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNL-R 722
Query: 464 MSEFIYEDGVDRYT-NSYKMKDQVALVLKDPV 494
+ I+ +D Y + ++KD + V DP+
Sbjct: 723 LCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 754
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 117/273 (42%), Gaps = 34/273 (12%)
Query: 6 VDEISHKLHLIDAVQRLGVAYQFEKEIE---DELQKLANDLG------SDSDNLYTVSLR 56
VD H + ++D +QRLG++ FE+EI+ D + + D G S ++ ++
Sbjct: 243 VDLFEH-IWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMA 301
Query: 57 FRLLRQQRVKISCDVXXXXXXXXXXXXASMINN--VRGMLSLYEAAHLAVHGEVILDEAI 114
FRLLRQ ++S DV +N V GM +LY A+ LA E IL A
Sbjct: 302 FRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAK 361
Query: 115 VFTTTHLKSMISR-------VISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDD-- 165
F+ +L R +I +L +I +Y++ Y ++
Sbjct: 362 EFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDV 421
Query: 166 -----------LHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 214
+++ L+ AK D+N QA HQ E +W+++ + ++ R ++
Sbjct: 422 WIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRL-SEWGVRRSELL 480
Query: 215 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLI 247
E Y+ ++ E + + R++ +K L+ I
Sbjct: 481 ECYYLAAATIF-ESERSHERMVWAKSSVLVKAI 512
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 250 TFDAYGTFEELTLFTEAVKRWDTNVTDTLPACM--KFIYNKLLGVYNEAEEELAKQGRSY 307
T D Y FE++TL + + + + LPA + F +LL + + EE+ +Y
Sbjct: 38 TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID----TY 93
Query: 308 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIAT 367
YA T+Q+ + M F ++L P V +++V L ++ VL S L G
Sbjct: 94 AFAYA-HTIQK-LYMGFNAIRYLP----PHV--FQNVPLLTVLVLERNDLSSLPRG---- 141
Query: 368 KEVFEWVLKVPKIITASENICRLLDDV 394
+F K+ + ++ N+ R+ DD
Sbjct: 142 --IFHNTPKLTTLSMSNNNLERIEDDT 166
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 250 TFDAYGTFEELTLFTEAVKRWDTNVTDTLPACM--KFIYNKLLGVYNEAEEELAKQGRSY 307
T D Y FE++TL + + + + LPA + F +LL + + EE+ +Y
Sbjct: 32 TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID----TY 87
Query: 308 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIAT 367
YA T+Q+ + M F ++L P V +++V L ++ VL S L G
Sbjct: 88 AFAYA-HTIQK-LYMGFNAIRYLP----PHV--FQNVPLLTVLVLERNDLSSLPRG---- 135
Query: 368 KEVFEWVLKVPKIITASENICRLLDDV 394
+F K+ + ++ N+ R+ DD
Sbjct: 136 --IFHNTPKLTTLSMSNNNLERIEDDT 160
>pdb|4AE4|A Chain A, The Ubap1 Subunit Of Escrt-I Interacts With Ubiquitin Via
A Novel Souba Domain
pdb|4AE4|B Chain B, The Ubap1 Subunit Of Escrt-I Interacts With Ubiquitin Via
A Novel Souba Domain
Length = 118
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 371 FEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWL 430
+E VL+ K A NI ++LD + +H ++G P VE ++ H SEE+ + +L
Sbjct: 22 YECVLRAXK--AAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEXHQCSEEKXXE--FL 77
Query: 431 EIANGWKDLNYE 442
++ + +K+ +E
Sbjct: 78 QLXSKFKEXGFE 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,852,372
Number of Sequences: 62578
Number of extensions: 481334
Number of successful extensions: 1324
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 28
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)