Query 010986
Match_columns 496
No_of_seqs 227 out of 893
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 2E-146 3E-151 1190.9 48.8 485 6-493 50-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 3E-139 6E-144 1156.1 46.5 481 6-496 267-778 (784)
3 PLN02592 ent-copalyl diphospha 100.0 4E-110 9E-115 919.5 43.2 443 6-495 307-800 (800)
4 PF03936 Terpene_synth_C: Terp 100.0 1E-49 2.2E-54 395.9 20.5 269 171-440 1-270 (270)
5 PF01397 Terpene_synth: Terpen 100.0 1.3E-49 2.7E-54 372.7 13.1 136 6-141 43-183 (183)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 5.8E-47 1.3E-51 378.7 30.7 283 185-469 1-284 (284)
7 cd00687 Terpene_cyclase_nonpla 100.0 1.3E-34 2.9E-39 293.3 21.2 248 188-444 13-265 (303)
8 PLN02150 terpene synthase/cycl 100.0 3.7E-31 7.9E-36 223.0 10.2 94 401-496 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.8 3.3E-21 7.1E-26 184.6 11.3 226 223-463 5-243 (243)
10 cd00686 Terpene_cyclase_cis_tr 97.8 0.0011 2.4E-08 67.6 16.8 196 229-448 80-280 (357)
11 PF06330 TRI5: Trichodiene syn 97.7 0.001 2.2E-08 68.8 15.9 192 225-440 76-274 (376)
12 PF00494 SQS_PSY: Squalene/phy 94.3 1.8 3.8E-05 43.0 15.6 210 215-457 6-233 (267)
13 cd00867 Trans_IPPS Trans-Isopr 92.5 2.4 5.3E-05 41.0 12.9 117 308-440 86-213 (236)
14 TIGR03464 HpnC squalene syntha 89.7 23 0.0005 35.3 18.4 120 215-362 6-131 (266)
15 TIGR03465 HpnD squalene syntha 88.8 27 0.00057 34.8 19.5 207 216-461 7-226 (266)
16 cd00683 Trans_IPPS_HH Trans-Is 83.3 50 0.0011 32.7 18.5 210 216-464 13-238 (265)
17 PLN02632 phytoene synthase 82.2 66 0.0014 33.3 19.0 192 234-455 75-281 (334)
18 PLN02890 geranyl diphosphate s 77.6 79 0.0017 34.0 15.3 90 307-400 227-316 (422)
19 cd00685 Trans_IPPS_HT Trans-Is 74.0 42 0.00092 33.2 11.5 120 307-440 108-238 (259)
20 TIGR02749 prenyl_cyano solanes 72.5 1.2E+02 0.0026 31.2 16.1 89 307-399 133-221 (322)
21 PLN02857 octaprenyl-diphosphat 70.7 1E+02 0.0022 33.1 14.0 89 307-399 227-315 (416)
22 COG0142 IspA Geranylgeranyl py 64.5 1.6E+02 0.0034 30.3 13.7 109 307-420 134-252 (322)
23 KOG1719 Dual specificity phosp 61.2 6.7 0.00015 36.1 2.5 29 402-430 119-148 (183)
24 COG3707 AmiR Response regulato 56.1 8.7 0.00019 36.6 2.4 47 389-435 129-176 (194)
25 KOG3887 Predicted small GTPase 52.3 9.1 0.0002 37.9 1.9 190 223-423 86-315 (347)
26 PF03861 ANTAR: ANTAR domain; 51.6 13 0.00028 27.9 2.4 29 406-434 15-43 (56)
27 TIGR02748 GerC3_HepT heptapren 47.1 3.4E+02 0.0073 27.9 16.4 87 307-399 129-217 (319)
28 COG4738 Predicted transcriptio 43.1 81 0.0018 27.5 6.1 79 13-98 14-102 (124)
29 PRK10888 octaprenyl diphosphat 39.6 4.4E+02 0.0096 27.1 16.4 88 307-399 130-218 (323)
30 PF12368 DUF3650: Protein of u 36.8 26 0.00057 22.8 1.6 18 412-429 9-26 (28)
31 PF10776 DUF2600: Protein of u 35.6 5.3E+02 0.011 26.8 15.7 117 333-472 174-294 (330)
32 CHL00151 preA prenyl transfera 33.5 5.4E+02 0.012 26.3 15.7 86 308-399 135-222 (323)
33 COG2443 Sss1 Preprotein transl 32.8 88 0.0019 24.6 4.3 23 333-355 25-47 (65)
34 smart00463 SMR Small MutS-rela 32.1 53 0.0011 26.1 3.2 23 417-439 7-29 (80)
35 PF05772 NinB: NinB protein; 31.3 24 0.00052 31.4 1.1 58 288-349 42-100 (127)
36 PF01713 Smr: Smr domain; Int 31.2 53 0.0012 26.3 3.1 24 417-440 4-27 (83)
37 PF03701 UPF0181: Uncharacteri 31.1 57 0.0012 24.2 2.8 45 391-437 2-46 (51)
38 PRK10581 geranyltranstransfera 29.0 5E+02 0.011 26.4 10.5 111 317-440 152-275 (299)
39 COG1308 EGD2 Transcription fac 27.7 57 0.0012 28.8 2.8 22 409-430 87-108 (122)
40 PF13798 PCYCGC: Protein of un 27.4 62 0.0013 29.9 3.1 33 413-453 126-158 (158)
41 smart00400 ZnF_CHCC zinc finge 26.5 68 0.0015 23.7 2.7 25 404-428 30-54 (55)
42 COG5123 TOA2 Transcription ini 25.0 39 0.00085 28.6 1.2 25 90-114 1-25 (113)
43 KOG3951 Uncharacterized conser 23.2 1.3E+02 0.0028 30.0 4.6 56 77-141 264-319 (321)
44 PRK05114 hypothetical protein; 22.6 92 0.002 23.8 2.7 45 391-437 2-46 (59)
45 COG3140 Uncharacterized protei 22.1 61 0.0013 24.5 1.6 47 392-440 3-49 (60)
46 PF00348 polyprenyl_synt: Poly 21.7 7.7E+02 0.017 24.2 11.7 81 317-400 113-194 (260)
47 PF11848 DUF3368: Domain of un 20.7 55 0.0012 23.7 1.2 20 57-76 25-44 (48)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.6e-146 Score=1190.92 Aligned_cols=485 Identities=51% Similarity=0.886 Sum_probs=471.1
Q ss_pred ccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhc-cC---CCCCCchhhhHHHHHhhhcCcccchhhhccccccccc
Q 010986 6 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG---SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGK 81 (496)
Q Consensus 6 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~---~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~ 81 (496)
+.|++++|++||+||||||+|||++||+++|++||++ .. ....||++|||+|||||||||+||||||++|+|++|+
T Consensus 50 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~ 129 (542)
T cd00684 50 PVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGK 129 (542)
T ss_pred CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCC
Confidence 5689999999999999999999999999999999996 11 2367999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhh--ccCCchHHHHHHHccCccccccchhHHHhhHH
Q 010986 82 FKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR--VISNNLAEQIQHALRLPLRKALPRLEARYYLN 159 (496)
Q Consensus 82 F~~~~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~ 159 (496)
|++++++||+||||||||||+++|||+|||||++||++||++.+++ ..+++|+++|++||++|||+++||||||+||+
T Consensus 130 f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~ 209 (542)
T cd00684 130 FKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIE 209 (542)
T ss_pred cCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 13889999999999999999999999999999
Q ss_pred hhCCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHH
Q 010986 160 MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK 239 (496)
Q Consensus 160 ~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK 239 (496)
+|++++++|++||||||+|||+||++||+||++++|||+++||.++|||+|+|+++||||++ |++|||++|.+|+++||
T Consensus 210 ~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~-a~~feP~~s~~Rl~~aK 288 (542)
T cd00684 210 FYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAA-GTYFEPQYSLARIALAK 288 (542)
T ss_pred HhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHH-hcccCccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999999999 99999999999999999
Q ss_pred HHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHH
Q 010986 240 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEV 319 (496)
Q Consensus 240 ~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~ 319 (496)
+++|+|++||+||.|||.+|++.||+||+|||+++++++|+|||+||.++++++++++.++.+++++++++|++++|+++
T Consensus 289 ~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~ 368 (542)
T cd00684 289 TIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDL 368 (542)
T ss_pred HHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888889999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhh
Q 010986 320 ILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKF 399 (496)
Q Consensus 320 ~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~k 399 (496)
++||++||+|+++||+||++|||++|++|+|+++++++++++||+.+|+++++|+..+|+++++++.++||+|||+||++
T Consensus 369 ~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~k 448 (542)
T cd00684 369 VKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYED 448 (542)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHH
Confidence 99999999999999999999999999999999999999999999999999999987789999999999999999999999
Q ss_pred hhhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhcc-CCCChhHHHHHHHHHhhhHhhcccCCCCCCC
Q 010986 400 EQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNL-IAMPLPLLGPVLNLARMSEFIYEDGVDRYTN 478 (496)
Q Consensus 400 E~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~-~~~p~~~~~~~~n~aR~~~~~Y~~~~D~~t~ 478 (496)
|+++|+++|+|.|||+|+|+|+|+|+++++++|+++||++| ++++++ +++|++|+++++|+||+++++|+++ ||||.
T Consensus 449 E~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln-~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~-D~~t~ 526 (542)
T cd00684 449 EMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELN-EEFLKPSSDVPRPIKQRFLNLARVIDVFYKEG-DGFTH 526 (542)
T ss_pred HHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCC
Confidence 99999999999999999999999999999999999999999 999998 7899999999999999999999999 99999
Q ss_pred Chh-HHHHHHHhhcCC
Q 010986 479 SYK-MKDQVALVLKDP 493 (496)
Q Consensus 479 ~~~-~k~~i~~l~~~p 493 (496)
|+. ||++|++||++|
T Consensus 527 ~~~~~~~~i~~ll~~p 542 (542)
T cd00684 527 PEGEIKDHITSLLFEP 542 (542)
T ss_pred ccHHHHHHHHHHhcCC
Confidence 976 999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=2.7e-139 Score=1156.14 Aligned_cols=481 Identities=26% Similarity=0.415 Sum_probs=456.7
Q ss_pred ccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhc--c--CCCCCCchhhhHHHHHhhhcCcccchhhhccccccccc
Q 010986 6 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND--L--GSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGK 81 (496)
Q Consensus 6 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~--~--~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~ 81 (496)
+.+.++++|+||+||||||+|||++||+++|+++|++ . .....|+++|||+|||||||||+||||||++|+|+ +
T Consensus 267 p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~-~- 344 (784)
T PLN02279 267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAED-H- 344 (784)
T ss_pred cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-c-
Confidence 4578999999999999999999999999999999985 1 12247999999999999999999999999999865 4
Q ss_pred ccccc---ccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhh------ccCCchHHHHHHHccCccccccchh
Q 010986 82 FKASM---INNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR------VISNNLAEQIQHALRLPLRKALPRL 152 (496)
Q Consensus 82 F~~~~---~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~------~~~~~l~~~V~~aL~~P~~~~~~rl 152 (496)
|++++ .+||+||||||||||+++|||+|||||+.||++||++.+++ ..+++|++||+|||++|||+++|||
T Consensus 345 F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~Rl 424 (784)
T PLN02279 345 FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERL 424 (784)
T ss_pred ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHH
Confidence 99887 69999999999999999999999999999999999998874 1267899999999999999999999
Q ss_pred HHHhhHHhhCCCCc------------CcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHH
Q 010986 153 EARYYLNMYSRDDL------------HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWT 220 (496)
Q Consensus 153 ear~yi~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~ 220 (496)
|||+||++|++++. +|++||||||+|||+||++||+||++++|||+++||. +|||+|||++|||||+
T Consensus 425 EaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L~-~L~faRdr~ve~Yf~a 503 (784)
T PLN02279 425 ANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRLD-KLKFARQKLAYCYFSA 503 (784)
T ss_pred HHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCCc-cCCchhhHHHHHHHHH
Confidence 99999999998885 8999999999999999999999999999999999995 8999999999999999
Q ss_pred hhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCC-CcCCCChhHHHHHHHHHHHHHHHHHH
Q 010986 221 LVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTN-VTDTLPACMKFIYNKLLGVYNEAEEE 299 (496)
Q Consensus 221 ~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~-~~~~lpe~mk~~~~al~~~~~ei~~~ 299 (496)
+ |++|||++|.+|++|||.+++++++||+||+|||.||++.||+||+|||++ .++.+|+|||+||.++++++++++.+
T Consensus 504 a-a~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~ 582 (784)
T PLN02279 504 A-ATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDK 582 (784)
T ss_pred H-HhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999999999999999999999999999998 56899999999999999999999876
Q ss_pred -HHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchh
Q 010986 300 -LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVP 378 (496)
Q Consensus 300 -~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p 378 (496)
+.++|+ ++++|++++|++++++|++||+|+.+||+||++|||+|+.+|+|+++++..+++++|+.+|+++++| .++|
T Consensus 583 ~~~~qGr-~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~-~~~~ 660 (784)
T PLN02279 583 AFTWQGR-NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDS-PELH 660 (784)
T ss_pred HHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhC-cchh
Confidence 567776 9999999999999999999999999999999999999999999999998889999999999999999 6999
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHhhHHHhhcc--CCCChhH
Q 010986 379 KIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH--VVSEEEAEKALWLEIANGWKDLNYEELLNL--IAMPLPL 454 (496)
Q Consensus 379 ~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~--g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~--~~~p~~~ 454 (496)
+|+++++.|+||+|||+||++|+++||+ |+|+|||+|+ |+|+|||+++++++|+++||+|| ++++++ +++|++|
T Consensus 661 ~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn-~~~l~~~~~~vp~~~ 738 (784)
T PLN02279 661 KLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELL-RLVLQEKGSNVPREC 738 (784)
T ss_pred HHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCCCHHH
Confidence 9999999999999999999999999998 9999999997 89999999999999999999999 999974 5799999
Q ss_pred HHHHHHHHhhhHhhcccCCCCCCCChhHHHHHHHhhcCCcCC
Q 010986 455 LGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF 496 (496)
Q Consensus 455 ~~~~~n~aR~~~~~Y~~~~D~~t~~~~~k~~i~~l~~~pi~~ 496 (496)
++++||++|++++||+++ ||||.+ .||++|+++|++||++
T Consensus 739 ~~~~ln~aR~~~~~Y~~~-Dgyt~~-~~k~~i~~ll~ePi~l 778 (784)
T PLN02279 739 KDLFWKMSKVLHLFYRKD-DGFTSN-DMMSLVKSVIYEPVSL 778 (784)
T ss_pred HHHHHHHHHhhhhheeCC-CCCChH-HHHHHHHHHhccCCcC
Confidence 999999999999999999 999975 7999999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=4.1e-110 Score=919.46 Aligned_cols=443 Identities=24% Similarity=0.376 Sum_probs=400.3
Q ss_pred ccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhc--c-C------CCCCCchhhhHHHHHhhhcCcccchhhhcccc
Q 010986 6 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND--L-G------SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFK 76 (496)
Q Consensus 6 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~--~-~------~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~ 76 (496)
+.|++++||+||+||||||+|||++||+++|+++|++ . . ....|+++|||+|||||||||+||||||++|+
T Consensus 307 P~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~ 386 (800)
T PLN02592 307 PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFE 386 (800)
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhc
Confidence 4588999999999999999999999999999999984 1 1 12479999999999999999999999999998
Q ss_pred cccccccccc---ccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhh--hc-----cCCchHHHHHHHccCccc
Q 010986 77 DDEGKFKASM---INNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMIS--RV-----ISNNLAEQIQHALRLPLR 146 (496)
Q Consensus 77 ~~~g~F~~~~---~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~--~~-----~~~~l~~~V~~aL~~P~~ 146 (496)
+ +|+|++.. .+|++||||||||||+++|||.|||||+.||++||++.+. ++ .+++|+++|+|||++|||
T Consensus 387 ~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~ 465 (800)
T PLN02592 387 K-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWY 465 (800)
T ss_pred C-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhh
Confidence 6 89998654 8999999999999999999999999999999999999864 11 257899999999999999
Q ss_pred cccchhHHHhhHHhhCCCCcC-------------cHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHH
Q 010986 147 KALPRLEARYYLNMYSRDDLH-------------DETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRM 213 (496)
Q Consensus 147 ~~~~rlear~yi~~y~~~~~~-------------n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ 213 (496)
+++||||||+||++|++++++ |++||||||+|||+||++||+||++++|||+++||. +|||+|||+
T Consensus 466 ~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~-~L~faRdr~ 544 (800)
T PLN02592 466 ASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLG-EFGVSRSEL 544 (800)
T ss_pred cCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCC-cCCcchhHH
Confidence 999999999999999987754 999999999999999999999999999999999996 899999999
Q ss_pred HHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhh--------hcCCCCcCCCCh-----
Q 010986 214 VEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVK--------RWDTNVTDTLPA----- 280 (496)
Q Consensus 214 ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~--------rWd~~~~~~lpe----- 280 (496)
+|||||++ |++|||++|.+|++|||.+++++++||+||+|||+||+++||++|+ |||.+++++||+
T Consensus 545 ve~Yfwa~-~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~ 623 (800)
T PLN02592 545 LLAYFLAA-ASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSV 623 (800)
T ss_pred HHHHHHHH-HhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccch
Confidence 99999999 9999999999999999999999999999999999999999999996 899999999988
Q ss_pred -hHHHHHHHHHHHHHHHHHH-HHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHH
Q 010986 281 -CMKFIYNKLLGVYNEAEEE-LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTAS 358 (496)
Q Consensus 281 -~mk~~~~al~~~~~ei~~~-~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~ 358 (496)
|||+||.||++++|+++.+ +..||+ ++.+|++++|.++++ +|..+|+ .|+|+..+++.+
T Consensus 624 ~~mki~f~aLy~tineia~~a~~~qGr-~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~ 684 (800)
T PLN02592 624 KTGEELVGLLLGTLNQLSLDALEAHGR-DISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKT 684 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHH
Confidence 9999999999999999766 555555 999999999999999 6766665 445666666666
Q ss_pred HH-hcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Q 010986 359 FL-DMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHV-VSEEEAEKALWLEIANGW 436 (496)
Q Consensus 359 ~~-~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g-~S~eeA~~~i~~~i~~~w 436 (496)
++ .+|..+|+++++ +|++.++++.+.||+||++|+++|+.. .| +|+ +|.+++.+.|+.++
T Consensus 685 ~~l~~g~~lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~-------------~~~~~~-~a~~~~~~~ie~~~ 746 (800)
T PLN02592 685 INLTAGRSLSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKVH-------------INTYNP-EEKSKTTPSIESDM 746 (800)
T ss_pred HHHhcCCCCCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhccc-------------CCcccH-HHHHHHHHHHHHHH
Confidence 66 669999999754 799999999999999999999998841 23 455 89999999999999
Q ss_pred HHhhHHHhhc-c-CCCChhHHHHHHHHHhhhHhhcccCCCCCCCChhHHHHHHHhhcCCcC
Q 010986 437 KDLNYEELLN-L-IAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVT 495 (496)
Q Consensus 437 k~ln~~~~l~-~-~~~p~~~~~~~~n~aR~~~~~Y~~~~D~~t~~~~~k~~i~~l~~~pi~ 495 (496)
+++. +.+++ . +.+|++|++.|||++| +||.. ||+.|..|+.+|+.+++|||+
T Consensus 747 ~eL~-~lvl~~~~~~vp~~cK~~f~~~~k---~fy~~---~~~~~~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 747 QELV-QLVLQNSSDDIDPVIKQTFLMVAK---SFYYA---AYCDPGTINYHIAKVLFERVA 800 (800)
T ss_pred HHHH-HHHhhcCCCCCCHHHHHHHHHHHH---HHHHh---hcCCHHHHHHHHHHHhCCCCC
Confidence 9999 99997 3 5699999999999999 45663 899998899999999999985
No 4
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=1e-49 Score=395.87 Aligned_cols=269 Identities=29% Similarity=0.407 Sum_probs=246.5
Q ss_pred HHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhh
Q 010986 171 LLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDT 250 (496)
Q Consensus 171 lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~ 250 (496)
||+|||+|||+||++||+|++++++||+++|+..+.+.+|+|++.++|+.+ +++++|+.+..|+++||+++|+|++||+
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~-aa~~~P~~~~~l~~~a~~~~w~f~~DD~ 79 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLL-AARFYPDSSDELLAAADWMAWLFIFDDF 79 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHH-HHHHSGCGHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhh-hheeCCCcHHHHHHHHhhchheeeeeec
Confidence 699999999999999999999999999999994466778999999999999 8888999667777999999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHh-CCCccchHHHHHHHHHHHHHHHHHHH
Q 010986 251 FDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQ-GRSYGIPYAKQTMQEVILMYFTEAKW 329 (496)
Q Consensus 251 fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~-~~~~~~~~~~~~w~~~~~a~l~EA~W 329 (496)
||.+|+.++++.++++++||++.....+|+.+++++.++.++++++...+.+. ++.++.++++++|.+|++++++|++|
T Consensus 80 ~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 159 (270)
T PF03936_consen 80 FDDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARW 159 (270)
T ss_dssp HHTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987777899999999999999999997665543 33136677999999999999999999
Q ss_pred hhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCcch
Q 010986 330 LKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSA 409 (496)
Q Consensus 330 ~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~ 409 (496)
+..|++||++||+++|+.|+|+++++.++++++|..+++...+++.++|.+.++++.+++|+|||.||+||+++|+.+|+
T Consensus 160 ~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~ 239 (270)
T PF03936_consen 160 RERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNL 239 (270)
T ss_dssp HHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSH
T ss_pred hccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccH
Confidence 99999999999999999999999999999999987778777777777788999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 410 VECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 410 V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
|.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 240 v~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 240 VVVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999987
No 5
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=1.3e-49 Score=372.70 Aligned_cols=136 Identities=52% Similarity=0.833 Sum_probs=118.2
Q ss_pred ccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhc-c--CCCCCCchhhhHHHHHhhhcCcccchhhhcccccccccc
Q 010986 6 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-L--GSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKF 82 (496)
Q Consensus 6 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~--~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~F 82 (496)
..|++++|+|||+||||||+|||++||+++|++||+. . .....||++|||+|||||||||+||||||++|+|++|+|
T Consensus 43 ~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F 122 (183)
T PF01397_consen 43 YPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNF 122 (183)
T ss_dssp SSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSB
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCcc
Confidence 3489999999999999999999999999999999996 1 112349999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhhccC--CchHHHHHHHc
Q 010986 83 KASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVIS--NNLAEQIQHAL 141 (496)
Q Consensus 83 ~~~~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~--~~l~~~V~~aL 141 (496)
+.++++||+||||||||||+++|||+|||||+.||++||++.+++... ++|+++|+|||
T Consensus 123 ~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 123 KESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp SGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred chhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999886522 34999999997
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=5.8e-47 Score=378.74 Aligned_cols=283 Identities=50% Similarity=0.865 Sum_probs=264.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHH
Q 010986 185 AHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFT 264 (496)
Q Consensus 185 ~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eEl~~~t 264 (496)
.||+|++++++||+++||....+++|.+...+|+|++ +++|+|+.+..|+++||+++|+|++||+||.+++.+++..++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a-~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~ 79 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAA-GSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFT 79 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHH-HhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHH
Confidence 5999999999999999997554499999999999999 999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhh
Q 010986 265 EAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSV 344 (496)
Q Consensus 265 ~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~ 344 (496)
++++||+....+.+|+++++++.++.++++++...+.+++++....+++++|.+++.++.+|++|+..|++||++||+.+
T Consensus 80 ~~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~ 159 (284)
T cd00868 80 EAVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLEN 159 (284)
T ss_pred HHHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHh
Confidence 99999998888889999999999999999999887777667688999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcCCCCHHHH
Q 010986 345 ALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEA 424 (496)
Q Consensus 345 ~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~eeA 424 (496)
|+.|+|+++++.++++++|..+|++.+.+.+..+++++.++.+++|+||++||+||+.+|+.+|+|.|||+++|+|.++|
T Consensus 160 R~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~eA 239 (284)
T cd00868 160 RRVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEEA 239 (284)
T ss_pred ceehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHHH
Confidence 99999999999999999999999855555588899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHhhcc-CCCChhHHHHHHHHHhhhHhhc
Q 010986 425 EKALWLEIANGWKDLNYEELLNL-IAMPLPLLGPVLNLARMSEFIY 469 (496)
Q Consensus 425 ~~~i~~~i~~~wk~ln~~~~l~~-~~~p~~~~~~~~n~aR~~~~~Y 469 (496)
++++.++++++|++++ +.+.+. ++.|+.+++.+.|..|.....|
T Consensus 240 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 240 LEELRKMIEEAWKELN-EEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 9999999999999999 988864 3678999999999999877654
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=1.3e-34 Score=293.33 Aligned_cols=248 Identities=18% Similarity=0.129 Sum_probs=215.0
Q ss_pred HHHHH-HHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhhcccC-CCHHHHHHHH
Q 010986 188 KELSD-MTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAY-GTFEELTLFT 264 (496)
Q Consensus 188 ~El~~-lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl-~~aK~~~l~~viDD~fD~~-gt~eEl~~~t 264 (496)
.+++. ...|.++.|+.. -+.+|+++..++|+.+ +.++.|+++.+|+ ..|++++|+|++||+||.. +++++.+.++
T Consensus 13 ~~~~~~~~~w~~~~~l~~-~~~~~~~~~~~~~~~~-~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~ 90 (303)
T cd00687 13 KEAQDEYLEWVLEEMLIP-SEKAEKRFLSADFGDL-AALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGV 90 (303)
T ss_pred HHHHHHHHHHHHHcCCCC-cchhHHHHhcCCHHHH-HhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHH
Confidence 44444 566999997753 3689999999888888 7788899999999 7789999999999999987 5899999999
Q ss_pred HHhhhcCCC-CcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhh
Q 010986 265 EAVKRWDTN-VTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKS 343 (496)
Q Consensus 265 ~ai~rWd~~-~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~ 343 (496)
+.+.++... .... |+...++..++.+++.++..... +...+++++.|.+++.++++|++|+.+|++||++||++
T Consensus 91 ~~~~~~~~~~~~~~-~~~~~p~~~~~~d~~~r~~~~~~----~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~ 165 (303)
T cd00687 91 TRLLDILRGDGLDS-PDDATPLEFGLADLWRRTLARMS----AEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLE 165 (303)
T ss_pred HHHHhccCCCCCCC-CCCCCHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 988885443 2222 57778899999999999864432 23457899999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhh-hcCCCcchHHHHHhcCCCCHH
Q 010986 344 VALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQ-KRGHIPSAVECYMKQHVVSEE 422 (496)
Q Consensus 344 ~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~-~rG~~~n~V~cyM~e~g~S~e 422 (496)
+|+.|+|+.+++.++++++|..+|+++.+. +...++.++++.+++|+|||+||+||+ +.|+.+|+|.|+|+++|+|.|
T Consensus 166 ~R~~~~g~~~~~~l~~~~~g~~lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~ 244 (303)
T cd00687 166 MRRFNIGADPCLGLSEFIGGPEVPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLE 244 (303)
T ss_pred HhhhcccccccHHHHHHhcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHH
Confidence 999999999999999999999999998665 445669999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHh
Q 010986 423 EAEKALWLEIANGWKDLNYEEL 444 (496)
Q Consensus 423 eA~~~i~~~i~~~wk~ln~~~~ 444 (496)
+|++++.++++++++++. +..
T Consensus 245 eA~~~~~~~~~~~~~~f~-~~~ 265 (303)
T cd00687 245 EAISVVRDMHNERITQFE-ELE 265 (303)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH
Confidence 999999999999999887 543
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.97 E-value=3.7e-31 Score=223.04 Aligned_cols=94 Identities=36% Similarity=0.619 Sum_probs=91.0
Q ss_pred hhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHhhhHhh-cccCCCCCCCC
Q 010986 401 QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFI-YEDGVDRYTNS 479 (496)
Q Consensus 401 ~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR~~~~~-Y~~~~D~~t~~ 479 (496)
++|||++|+|+|||||||+|+|||+++++++|+++||++| +|+++++++|.+++++++|+||+++++ |+++ ||||.+
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN-~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~-Dg~t~~ 78 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVM-EEFLTIKDVPRPVLVRCLNLARLIDVYCYNEG-DGFTYP 78 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHHHHhheecCC-CCCCCC
Confidence 5799999999999999999999999999999999999999 999999999999999999999999999 9999 999988
Q ss_pred hh-HHHHHHHhhcCCcCC
Q 010986 480 YK-MKDQVALVLKDPVTF 496 (496)
Q Consensus 480 ~~-~k~~i~~l~~~pi~~ 496 (496)
.. +|++|++||++|||+
T Consensus 79 ~~~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 79 HGKLKDLITSLFFHPLPL 96 (96)
T ss_pred cHHHHHHHHHHhccCCCC
Confidence 76 999999999999986
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.85 E-value=3.3e-21 Score=184.65 Aligned_cols=226 Identities=26% Similarity=0.243 Sum_probs=180.3
Q ss_pred ccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 010986 223 GVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAK 302 (496)
Q Consensus 223 a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~ 302 (496)
++++.|+.+..|.+++++.+|++++||++|..++..........+ .....|..+......+...++++.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 77 (243)
T cd00385 5 AVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELAREGS- 77 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhCCC-
Confidence 667789888999999999999999999999888766655544333 1234577777788888888888764321
Q ss_pred hCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHH
Q 010986 303 QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIIT 382 (496)
Q Consensus 303 ~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~ 382 (496)
+.+..++.+.|.+++.|+.+|+.|... .+||++||+..+..++ +.++......+++...|+ .++......+..
T Consensus 78 ---~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 150 (243)
T cd00385 78 ---PEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKT-AGLVGALCLLGAGLSGGE--AELLEALRKLGR 150 (243)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhH-HHHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 245678999999999999999999876 8899999999999998 555656666766666665 334455678889
Q ss_pred HHHHHHHHhcCccchhhhhhcC-CCcchHHHHHhcCCC------------CHHHHHHHHHHHHHHHHHHhhHHHhhccCC
Q 010986 383 ASENICRLLDDVASHKFEQKRG-HIPSAVECYMKQHVV------------SEEEAEKALWLEIANGWKDLNYEELLNLIA 449 (496)
Q Consensus 383 ~~~~i~RL~NDI~S~~kE~~rG-~~~n~V~cyM~e~g~------------S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~ 449 (496)
..+.+.+|.||+.|+.+|.++| ...|++.++|+++|+ +.++|++++..+++++|++++ +.....+.
T Consensus 151 ~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~ 229 (243)
T cd00385 151 ALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELN-ELILSLPD 229 (243)
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHh-cCCCCcHH
Confidence 9999999999999999999996 678999999999998 889999999999999999998 76543223
Q ss_pred CChhHHHHHHHHHh
Q 010986 450 MPLPLLGPVLNLAR 463 (496)
Q Consensus 450 ~p~~~~~~~~n~aR 463 (496)
.+..+++.+.++.|
T Consensus 230 ~~~~~~~~~~~~~~ 243 (243)
T cd00385 230 VPRALLALALNLYR 243 (243)
T ss_pred HHHHHHHHHHHHhC
Confidence 45667777776653
No 10
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.79 E-value=0.0011 Score=67.57 Aligned_cols=196 Identities=15% Similarity=0.092 Sum_probs=117.0
Q ss_pred CccchhH-HHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 010986 229 KYTFGRI-LVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSY 307 (496)
Q Consensus 229 ~~s~~Rl-~~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~ 307 (496)
..|..=+ .++-..+.++++||.-|.. .+.++.|.+.+.. +.+-. -| +...+.+.+..+-+-. |++
T Consensus 80 ~~skev~~~isi~~tY~~~lDD~~~e~--~~~m~~f~~dL~~--G~~qk-hP-----~l~~v~~~l~~~lr~f----GpF 145 (357)
T cd00686 80 KVSKECMADLSIHYTYTLVLDDSKDDP--YPTMVNYFDDLQA--GREQA-HP-----WWALVNEHFPNVLRHF----GPF 145 (357)
T ss_pred CCCHHHHHHHHHHHheeeEeccccccc--chHHHHHHHHHhc--CCCCC-Cc-----HHHHHHHHHHHHHHHh----hhh
Confidence 3555544 6677778888999997754 3466677766654 22111 22 3333333333332221 234
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHH-
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASEN- 386 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~- 386 (496)
+..-+.++--+++.+..-|... .+.-|.-.+|-...|.=+|.+-+.+... -|++.|.-...+..+..+...
T Consensus 146 ~s~~IikSTLdFv~g~~iEq~n--f~~~p~A~~fP~ylR~ksGl~E~yA~Fi------FPk~~FpE~~~~~qi~~AIp~~ 217 (357)
T cd00686 146 CSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGASL------WPKEQFNERSLFLEITSAIAQM 217 (357)
T ss_pred hHHHHHHHHHHHHHHHHHhhhc--cCCCCCCcccchHHHhccCCcceeEEEe------cchhhCchHhhHHHhhHHHHHH
Confidence 4455667777899999888663 3335655555555555555554433222 244432221222333333333
Q ss_pred --HHHHhcCccchhhhhhc-CCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccC
Q 010986 387 --ICRLLDDVASHKFEQKR-GHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLI 448 (496)
Q Consensus 387 --i~RL~NDI~S~~kE~~r-G~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~ 448 (496)
..-++|||.||=||.-. ++-.|.|.-|.+.+|+|..+|.+.+.+-.-.+-+++. .+|.+.
T Consensus 218 ~~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~--~VLse~ 280 (357)
T cd00686 218 ENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMV--AVFSDK 280 (357)
T ss_pred HHHHHhhhhhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHH--HHhcCC
Confidence 34588999999999854 4557889889989999999999988777766776755 556543
No 11
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.74 E-value=0.001 Score=68.83 Aligned_cols=192 Identities=14% Similarity=0.142 Sum_probs=111.6
Q ss_pred ccCCCccch-hHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 010986 225 YCEPKYTFG-RILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQ 303 (496)
Q Consensus 225 ~~eP~~s~~-Rl~~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~ 303 (496)
+..|..+.. ++.+|-..++++++||.++.. .+++..|-+.+-. ..+-. . ++...+.+.+.++.+ .
T Consensus 76 ~~y~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~--Gq~Q~-~-----p~L~~~~~~L~~~~~----~ 141 (376)
T PF06330_consen 76 YCYPHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL--GQPQK-H-----PLLDGFASLLREMWR----H 141 (376)
T ss_dssp HHSTTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH--T---S-S-----HHHHHHHHHHHHHHT----T
T ss_pred eecCCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc--CCCCC-C-----HHHHHHHHHHHHHHH----H
Confidence 334766654 568899999999999998765 4677777766554 11111 1 344555554444432 2
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHhhCCC--CCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHH
Q 010986 304 GRSYGIPYAKQTMQEVILMYFTEAKWLKEGY--VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKII 381 (496)
Q Consensus 304 ~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~--vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~ 381 (496)
=++.+.+-+.++--+++.+..-|.+..+ ++ -|.+-+|+. .=+|.....+...+ -...-|+. .....++
T Consensus 142 fgpf~anmI~~STLdFi~g~~LE~~~f~-~~p~A~~FP~fLR---~ktGlsEaYA~FiF-Pk~~fpe~-----~~~~~y~ 211 (376)
T PF06330_consen 142 FGPFCANMIVKSTLDFINGCWLEQKNFH-GSPGAPDFPDFLR---RKTGLSEAYAFFIF-PKALFPEV-----EYFIQYT 211 (376)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHTTT-----TT-TTHHHHHH---HHHH-HHHHHHHT---TTTS-TT-----TTHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhhcccCC-CCCCCccccHHHH---hccCcchhheeeec-ccccCChH-----HHHHHHH
Confidence 2234555677888889999998876432 22 235566655 44444444443222 22223322 2233333
Q ss_pred HHH---HHHHHHhcCccchhhhhh-cCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 382 TAS---ENICRLLDDVASHKFEQK-RGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 382 ~~~---~~i~RL~NDI~S~~kE~~-rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
.+. ...+-++|||.||=||.- .|+..|.|.-+-.-+|+|.-+|.+.+.+-.-++-+++.
T Consensus 212 ~AIpdl~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~ 274 (376)
T PF06330_consen 212 PAIPDLMRFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVR 274 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 334458899999999977 78889999888888899999999998666666666654
No 12
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=94.30 E-value=1.8 Score=43.00 Aligned_cols=210 Identities=15% Similarity=0.115 Sum_probs=109.0
Q ss_pred HHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHH----HHHHHHHhhhcCCCCcCCCChhHHHHHHHHH
Q 010986 215 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEE----LTLFTEAVKRWDTNVTDTLPACMKFIYNKLL 290 (496)
Q Consensus 215 e~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eE----l~~~t~ai~rWd~~~~~~lpe~mk~~~~al~ 290 (496)
..|++++ . + -| ...|-.+.-+-.+.-.+||+-|....+.+ ++-+-+++++.-.+..+..|....++..++.
T Consensus 6 ~sf~~a~-~-~-lP--~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~ 80 (267)
T PF00494_consen 6 RSFYLAS-L-L-LP--KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALA 80 (267)
T ss_dssp HHHHHHH-T-T-S---HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHH
T ss_pred ccHHHHH-H-H-CC--HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHH
Confidence 3455554 3 3 35 44555556677888889999997664332 4445555554221111223344456666654
Q ss_pred HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCH-H
Q 010986 291 GVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATK-E 369 (496)
Q Consensus 291 ~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~-e 369 (496)
.+..... --++.+.+++.|+.+ +.....++|++|.......++|....+.+-.++..+ ++ +
T Consensus 81 ~~~~~~~-------------l~~~~l~~li~~~~~---dl~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~--~~~~ 142 (267)
T PF00494_consen 81 DLVRRYG-------------LPREPLLELIDGMEM---DLEFTPYETFADLERYCYYVAGSVGLLLLQLLGAHD--PDEA 142 (267)
T ss_dssp HHHCCSH-------------HHHHHHHHHHHHHHH---CTT-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSST--SHHH
T ss_pred HHHHHHh-------------hhHHHHHHHHHHhcc---cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc--chhh
Confidence 4332211 234566777777763 334455889999999988888887776666665521 22 2
Q ss_pred HHHhhhchhHHHHHHHHHHHHhcCccchhhh-hhcCCCcchH-HHHHhcCCCCHHHHHHH----------HHHHHHHHHH
Q 010986 370 VFEWVLKVPKIITASENICRLLDDVASHKFE-QKRGHIPSAV-ECYMKQHVVSEEEAEKA----------LWLEIANGWK 437 (496)
Q Consensus 370 ~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE-~~rG~~~n~V-~cyM~e~g~S~eeA~~~----------i~~~i~~~wk 437 (496)
+.+ .....+...-+.|=+...... ..+|-+ .+ .=.|.++|+|.++-... +..+++.+..
T Consensus 143 ~~~-------~a~~lG~alql~nilRd~~~D~~~~gR~--ylP~d~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~ 213 (267)
T PF00494_consen 143 ARD-------AARALGRALQLTNILRDIPEDALRRGRI--YLPLDDLRRFGVTPEDLLAGRPRSERLRALIRELAARARA 213 (267)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHTHHHH-HHTT-----S-HHHHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHHHhHHHHHhcccc--cCCchhHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 222 223334444444444444555 456654 11 23578899988865432 3455555554
Q ss_pred HhhHHHhhccCCC-ChhHHHH
Q 010986 438 DLNYEELLNLIAM-PLPLLGP 457 (496)
Q Consensus 438 ~ln~~~~l~~~~~-p~~~~~~ 457 (496)
.+. +..--...+ |..+.-.
T Consensus 214 ~l~-~a~~~~~~l~~~~~~~~ 233 (267)
T PF00494_consen 214 HLD-EARAGLSALPPPRARPA 233 (267)
T ss_dssp HHH-HHHHGGGGS--TTHHHH
T ss_pred HHH-HHHHHHHHcCCHhhhHH
Confidence 444 322222446 5444443
No 13
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=92.46 E-value=2.4 Score=40.98 Aligned_cols=117 Identities=10% Similarity=0.075 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhh-ccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALR-SIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASEN 386 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~-S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~ 386 (496)
....+.+...+++.|...+..|..+ ..||+++|.+.... |++..-..+..-...+. -+++.. ....++-+..+.
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~lG~ 160 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSG-ADDEQA---EALKDYGRALGL 160 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC-cCHHHH---HHHHHHHHHHHH
Confidence 3456778889999999999988654 57999999999888 66654333332222222 222222 223566777788
Q ss_pred HHHHhcCccchhhhh----------hcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 387 ICRLLDDVASHKFEQ----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 387 i~RL~NDI~S~~kE~----------~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
..-+.||+..+.... ++|.. +...+++ .+.+.+.++++++.+.
T Consensus 161 a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~ 213 (236)
T cd00867 161 AFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALE 213 (236)
T ss_pred HHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 888999999886654 55555 5555555 5556666666665554
No 14
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=89.68 E-value=23 Score=35.26 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=65.2
Q ss_pred HHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccC-CCHHH----HHHHHHHhhh-cCCCCcCCCChhHHHHHHH
Q 010986 215 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAY-GTFEE----LTLFTEAVKR-WDTNVTDTLPACMKFIYNK 288 (496)
Q Consensus 215 e~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~-gt~eE----l~~~t~ai~r-Wd~~~~~~lpe~mk~~~~a 288 (496)
++|+|+. -.. |. ..|-.+.-+-.|.=++||+-|.. .++++ ++-+-++++. .... |. .++..+
T Consensus 6 ~sf~~a~-~~l--p~--~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~~~~g~-----~~--~pv~~a 73 (266)
T TIGR03464 6 ENFPVAS-LLL--PA--RLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDAIYSGE-----PA--APVFVA 73 (266)
T ss_pred CcHHHHH-HhC--CH--HHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHhCCC-----CC--ChHHHH
Confidence 3466665 333 33 33444444666667889999975 44443 3333333433 1111 11 245666
Q ss_pred HHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhc
Q 010986 289 LLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM 362 (496)
Q Consensus 289 l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~ 362 (496)
+..++.+. + .+ ++.+.+++.++... ......+|++|.......++|+-..+++-.++.
T Consensus 74 L~~~~~~~--------~---l~--~~~~~~li~~~~~D---l~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g~ 131 (266)
T TIGR03464 74 LARTVQRH--------G---LP--IEPFLDLLDAFRQD---VVVTRYATWAELLDYCRYSANPVGRLVLDLYGA 131 (266)
T ss_pred HHHHHHHc--------C---CC--hHHHHHHHHHHHHh---ccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcCC
Confidence 65544432 1 11 34555666666422 334457799988888888887776666555543
No 15
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=88.85 E-value=27 Score=34.80 Aligned_cols=207 Identities=12% Similarity=0.114 Sum_probs=102.6
Q ss_pred HHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHH----HHHHHHhhhcCCCCcCCCChhHHHHHHHHHH
Q 010986 216 VYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEEL----TLFTEAVKRWDTNVTDTLPACMKFIYNKLLG 291 (496)
Q Consensus 216 ~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eEl----~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~ 291 (496)
+|++++ ... |. ..|-.++-+-.+.-.+||+=|..+++++- +-+-+++..-.... |. .++..++..
T Consensus 7 sF~~a~-~~l--p~--~~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~g~----~~--~pv~~al~~ 75 (266)
T TIGR03465 7 SFYYGM-RLL--PP--ERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEIDRLYAGA----PS--HPVARALAD 75 (266)
T ss_pred cHHHHH-HHC--CH--HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHhCCC----CC--ChHHHHHHH
Confidence 455555 333 33 34444455677777899999975544432 22222333211111 21 245555544
Q ss_pred HHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHH
Q 010986 292 VYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVF 371 (496)
Q Consensus 292 ~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~ 371 (496)
++... + . -++.+.+++.++.+.. ....++|++|+......+.|+-..+++-.++.. ++...
T Consensus 76 ~~~~~--------~---l--~~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~vg~l~~~llg~~---~~~~~ 136 (266)
T TIGR03465 76 PARRF--------D---L--PQEDFLEVIDGMEMDL---EQTRYPDFAELDLYCDRVAGAVGRLSARIFGAT---DARTL 136 (266)
T ss_pred HHHHc--------C---C--CHHHHHHHHHHHHHHc---CCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC---ChhHH
Confidence 43321 1 0 1355677777776433 344678999988887777776666555444322 22222
Q ss_pred HhhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcCCCCHH---------HHHHHHHHHHHHHHHHhhHH
Q 010986 372 EWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEE---------EAEKALWLEIANGWKDLNYE 442 (496)
Q Consensus 372 e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~e---------eA~~~i~~~i~~~wk~ln~~ 442 (496)
.. ....+...-|.|=+.......++|-+ -+=.=.|.++|+|.+ ...+-+..+++.+..-+. +
T Consensus 137 ~~-------a~~lG~AlqltnilRdv~eD~~~gR~-ylP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~-~ 207 (266)
T TIGR03465 137 EY-------AHHLGRALQLTNILRDVGEDARRGRI-YLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYA-E 207 (266)
T ss_pred HH-------HHHHHHHHHHHHHHHHhHHHHhCCCe-ecCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHH-H
Confidence 21 22223333233322222334556654 111234677898876 334556666666665554 3
Q ss_pred HhhccCCCChhHHHHHHHH
Q 010986 443 ELLNLIAMPLPLLGPVLNL 461 (496)
Q Consensus 443 ~~l~~~~~p~~~~~~~~n~ 461 (496)
..--...+|......++-.
T Consensus 208 a~~~~~~~p~~~~~~~~~~ 226 (266)
T TIGR03465 208 ADALLPACDRRAQRAARAM 226 (266)
T ss_pred HHHhhhhCCHhhhHHHHHH
Confidence 3211245776444343333
No 16
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=83.29 E-value=50 Score=32.68 Aligned_cols=210 Identities=14% Similarity=0.122 Sum_probs=105.3
Q ss_pred HHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCH-----HHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHH
Q 010986 216 VYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTF-----EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLL 290 (496)
Q Consensus 216 ~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~-----eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~ 290 (496)
.|+++. -.. | ...|-.+.-+-.+.-.+||+=|..... ..++-+-++++.-.... -|. .++..++.
T Consensus 13 sf~~a~-~~l--p--~~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~~---~~~--~pv~~al~ 82 (265)
T cd00683 13 SFYLAS-RLL--P--PELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWGG---APT--HPVLRALA 82 (265)
T ss_pred cHHHHH-HhC--C--HHHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHcCC---CCC--ChHHHHHH
Confidence 455554 322 4 334554445667777789999975532 23444444444311111 111 14566665
Q ss_pred HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHH
Q 010986 291 GVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEV 370 (496)
Q Consensus 291 ~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~ 370 (496)
.+..+ .+ --++.+.+++.++..... ....||++|.......+.|+-..+++-.++.+ -+++.
T Consensus 83 ~~~~~--------~~-----l~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~--~~~~~ 144 (265)
T cd00683 83 DLARR--------YG-----IPREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVFGAS--SDEAA 144 (265)
T ss_pred HHHHH--------cC-----CCHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC--CChHH
Confidence 54431 11 124666777778774444 45678998888877777776655555555431 12222
Q ss_pred HHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCCC--cchHHHHHhcCCCCHHHH---------HHHHHHHHHHHHHHh
Q 010986 371 FEWVLKVPKIITASENICRLLDDVASHKFEQKRGHI--PSAVECYMKQHVVSEEEA---------EKALWLEIANGWKDL 439 (496)
Q Consensus 371 ~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~--~n~V~cyM~e~g~S~eeA---------~~~i~~~i~~~wk~l 439 (496)
. +.....+...-|.|=+.......++|-+ +. =.|.++|+|.++- ..-+..+++.+.+-+
T Consensus 145 ~-------~~A~~lG~AlqltnilRdv~eD~~~gR~YlP~---d~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~ 214 (265)
T cd00683 145 L-------ERARALGLALQLTNILRDVGEDARRGRIYLPR---EELARFGVTLEDLLAPENSPAFRALLRRLIARARAHY 214 (265)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHccCCCcCCH---HHHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 2222233333333323222333455543 22 2367788887653 244555666665554
Q ss_pred hHHHhhccCCCChhHHHHHHHHHhh
Q 010986 440 NYEELLNLIAMPLPLLGPVLNLARM 464 (496)
Q Consensus 440 n~~~~l~~~~~p~~~~~~~~n~aR~ 464 (496)
. ...-....+|....-.++-++.+
T Consensus 215 ~-~a~~~~~~lp~~~~~~~~~~~~~ 238 (265)
T cd00683 215 R-EALAGLAALPRRSRFCVRAAAML 238 (265)
T ss_pred H-HHHHhHHhCCHhhHHHHHHHHHH
Confidence 4 33322245776555444444433
No 17
>PLN02632 phytoene synthase
Probab=82.21 E-value=66 Score=33.32 Aligned_cols=192 Identities=11% Similarity=0.079 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHhhhhhcccCCCH----HHHHHHHHHhhhc-CCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 010986 234 RILVSKIICLISLIDDTFDAYGTF----EELTLFTEAVKRW-DTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYG 308 (496)
Q Consensus 234 Rl~~aK~~~l~~viDD~fD~~gt~----eEl~~~t~ai~rW-d~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~ 308 (496)
|-.+.-+-.|.-.+||+=|..... ..++..-+.+++- +.. |. .++..++.++..+.. -
T Consensus 75 R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~~~g~-----~~--~pv~~aL~~~~~~~~---------L- 137 (334)
T PLN02632 75 RKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLEDLFDGR-----PY--DMLDAALADTVSKFP---------L- 137 (334)
T ss_pred HHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHHHhCCC-----CC--ChHHHHHHHHHHHCC---------C-
Confidence 333444666667789999965432 2344444444331 111 11 145566655444321 0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHH
Q 010986 309 IPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENIC 388 (496)
Q Consensus 309 ~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~ 388 (496)
-++.+.+++.++.... .....+|++|+......+.|+--.+++..++.....+.. .+++ .+.....+...
T Consensus 138 ---~~~~~~~li~g~~~Dl---~~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~~~~~-~~~~---~~~A~~lG~Al 207 (334)
T PLN02632 138 ---DIQPFRDMIEGMRMDL---VKSRYENFDELYLYCYYVAGTVGLMSVPVMGIAPESKAS-TESV---YNAALALGIAN 207 (334)
T ss_pred ---ChHHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCccccc-hHHH---HHHHHHHHHHH
Confidence 1345567777776433 234678999888888777776666555555443311100 0111 11122223333
Q ss_pred HHhcCccchhhhhhcCCCcchH-HHHHhcCCCCHHHH---------HHHHHHHHHHHHHHhhHHHhhccCCCChhHH
Q 010986 389 RLLDDVASHKFEQKRGHIPSAV-ECYMKQHVVSEEEA---------EKALWLEIANGWKDLNYEELLNLIAMPLPLL 455 (496)
Q Consensus 389 RL~NDI~S~~kE~~rG~~~n~V-~cyM~e~g~S~eeA---------~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~ 455 (496)
-|.|=+.......++|-+ .+ .=.|.++|+|.++- ..-+..+++.+..-+. +..---..+|..+.
T Consensus 208 QltNILRDv~eD~~~GRv--YLP~e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~-~a~~~l~~lp~~~r 281 (334)
T PLN02632 208 QLTNILRDVGEDARRGRV--YLPQDELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFA-EAEEGVSELDPASR 281 (334)
T ss_pred HHHHHHHHHHHHHhCCce--eCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHhHhhCCHHhH
Confidence 333333333344566653 11 12467899998872 2344555555554433 32211234776554
No 18
>PLN02890 geranyl diphosphate synthase
Probab=77.59 E-value=79 Score=33.99 Aligned_cols=90 Identities=12% Similarity=-0.026 Sum_probs=58.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASEN 386 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~ 386 (496)
.++..+.++...++.|-+.+..|.. ...+|+++|++....-+|.....++..-++=-..+++..+.+ -.+-+..+.
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l---~~fG~~lGl 302 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLA---FEYGRNLGL 302 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHH---HHHHHHHHH
Confidence 4566788889999999999999864 456899999987655555443222211111012355554433 456677777
Q ss_pred HHHHhcCccchhhh
Q 010986 387 ICRLLDDVASHKFE 400 (496)
Q Consensus 387 i~RL~NDI~S~~kE 400 (496)
..-+.||+..|.-.
T Consensus 303 AFQI~DDiLD~~g~ 316 (422)
T PLN02890 303 AFQLIDDVLDFTGT 316 (422)
T ss_pred HHHHHHHHHhhcCC
Confidence 77899999987543
No 19
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=73.95 E-value=42 Score=33.16 Aligned_cols=120 Identities=11% Similarity=-0.011 Sum_probs=73.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASEN 386 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~ 386 (496)
.....+.+.....+.|-..+..|... ..||.++|++....-+|.....+....++--..+++..+ ...++-+..+.
T Consensus 108 ~~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~~~~~~~~---~l~~~g~~lG~ 183 (259)
T cd00685 108 RALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAGADEEEAE---ALKRFGRNLGL 183 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHHH
Confidence 34556778888899999999988653 579999999988776666543332221110112333322 23456667777
Q ss_pred HHHHhcCccchhhhh-----------hcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 387 ICRLLDDVASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 387 i~RL~NDI~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
..-+.||+..+.... .+|.. |...+|.. .+.+...++++++.+.
T Consensus 184 afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~-T~~~~~~l---------~~~~~~~~~~a~~~l~ 238 (259)
T cd00685 184 AFQIQDDILDLFGDPETLGKPVGSDLREGKC-TLPVLLAL---------RELAREYEEKALEALK 238 (259)
T ss_pred HHHHHHHhhcccCChHHHCCCcchHHHcCCc-hHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 778889987765432 22333 45444443 5566667777776655
No 20
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=72.50 E-value=1.2e+02 Score=31.18 Aligned_cols=89 Identities=9% Similarity=-0.044 Sum_probs=54.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASEN 386 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~ 386 (496)
.+...+.++..+++.+-+.+..|.. ...+|.++|++.-..=+|.....++..-++--..+++..+. .-++-+..+.
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~---l~~~G~~lG~ 208 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQF-DSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVAND---LYEYGKHLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHH---HHHHHHHHHH
Confidence 3455677788888999888877743 33579999999765544544322211111111234444333 2556677788
Q ss_pred HHHHhcCccchhh
Q 010986 387 ICRLLDDVASHKF 399 (496)
Q Consensus 387 i~RL~NDI~S~~k 399 (496)
..-+.||+..+.-
T Consensus 209 aFQi~DDild~~~ 221 (322)
T TIGR02749 209 AFQVVDDILDFTG 221 (322)
T ss_pred HHHHHHHhccCCC
Confidence 8889999988753
No 21
>PLN02857 octaprenyl-diphosphate synthase
Probab=70.71 E-value=1e+02 Score=33.13 Aligned_cols=89 Identities=13% Similarity=0.009 Sum_probs=55.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASEN 386 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~ 386 (496)
.+...+.++..+++.+-+.+..+.. +.-+|.++|++....-+|.....++..-+.=-..+++..+. ..++-+..+.
T Consensus 227 ~~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~---l~~fG~~LGi 302 (416)
T PLN02857 227 EVIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQ---MYEYGKNLGL 302 (416)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 3455677788888888888887754 44579999999766655544332211111101234554333 2556667777
Q ss_pred HHHHhcCccchhh
Q 010986 387 ICRLLDDVASHKF 399 (496)
Q Consensus 387 i~RL~NDI~S~~k 399 (496)
..-+.||+..+..
T Consensus 303 AFQI~DDiLD~~~ 315 (416)
T PLN02857 303 AFQVVDDILDFTQ 315 (416)
T ss_pred HHHHHHHHHhhcC
Confidence 7788999998763
No 22
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=64.49 E-value=1.6e+02 Score=30.34 Aligned_cols=109 Identities=14% Similarity=0.045 Sum_probs=69.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASEN 386 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~ 386 (496)
.....+.+....++.+-..+..|..+. +|.++|+.+-..=+|.....+...-++--..+++..+.+ ..+-+..+.
T Consensus 134 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l---~~~g~~lGl 208 (322)
T COG0142 134 EAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEAL---EDYGRNLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHhhH
Confidence 345677888899999999988886655 999999997666555443322222111011234544443 556777888
Q ss_pred HHHHhcCccchhhhh-hcCCC---------cchHHHHHhcCCCC
Q 010986 387 ICRLLDDVASHKFEQ-KRGHI---------PSAVECYMKQHVVS 420 (496)
Q Consensus 387 i~RL~NDI~S~~kE~-~rG~~---------~n~V~cyM~e~g~S 420 (496)
+.-+.||+..+.-+. .-|+. .+...++.-+.+-.
T Consensus 209 aFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 209 AFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred HHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 888999998887642 22332 36666777665443
No 23
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=61.15 E-value=6.7 Score=36.13 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.5
Q ss_pred hcCCCcchHHHHHhcC-CCCHHHHHHHHHH
Q 010986 402 KRGHIPSAVECYMKQH-VVSEEEAEKALWL 430 (496)
Q Consensus 402 ~rG~~~n~V~cyM~e~-g~S~eeA~~~i~~ 430 (496)
.||-.+..|.||+-++ +.|.++|.+++++
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~ 148 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRK 148 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHh
Confidence 4666788999998887 8999999999988
No 24
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=56.08 E-value=8.7 Score=36.60 Aligned_cols=47 Identities=28% Similarity=0.201 Sum_probs=33.7
Q ss_pred HHhcCccchhhhhhcCCC-cchHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 010986 389 RLLDDVASHKFEQKRGHI-PSAVECYMKQHVVSEEEAEKALWLEIANG 435 (496)
Q Consensus 389 RL~NDI~S~~kE~~rG~~-~n~V~cyM~e~g~S~eeA~~~i~~~i~~~ 435 (496)
.|--++..+++..+.-.+ .-+=.+.|+++|+|++||+++++++.-+.
T Consensus 129 ~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM~R 176 (194)
T COG3707 129 ALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTAMDR 176 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 466667777776544332 34445799999999999999999975443
No 25
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.32 E-value=9.1 Score=37.95 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=97.6
Q ss_pred ccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhh-c--CC--------CCcCCCChhHHHHHHHHHH
Q 010986 223 GVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKR-W--DT--------NVTDTLPACMKFIYNKLLG 291 (496)
Q Consensus 223 a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~r-W--d~--------~~~~~lpe~mk~~~~al~~ 291 (496)
..+|+|.|..+++ +.++.+|++++|-+=|- .+-+..+..-+.| . ++ ..++.|++..|+=-+ .+
T Consensus 86 ~~~Fd~s~D~e~i-F~~~gALifvIDaQddy---~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietq--rd 159 (347)
T KOG3887|consen 86 MDFFDPSFDYEMI-FRGVGALIFVIDAQDDY---MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQ--RD 159 (347)
T ss_pred cccCCCccCHHHH-HhccCeEEEEEechHHH---HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhH--HH
Confidence 4688999999966 58899999999865432 2233333333443 1 21 456788887664222 23
Q ss_pred HHHHHHHHHHHhCCC--ccchHHHHHH-HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHH-----HHHhcC
Q 010986 292 VYNEAEEELAKQGRS--YGIPYAKQTM-QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA-----SFLDMG 363 (496)
Q Consensus 292 ~~~ei~~~~~~~~~~--~~~~~~~~~w-~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~-----~~~~~g 363 (496)
+..+..+++...|-- .+.-|+...+ ...++|+-.=.+- --...||+|.-|.+=..+|+..-.+.. ++++ .
T Consensus 160 I~qr~~d~l~d~gle~v~vsf~LTSIyDHSIfEAFSkvVQk-LipqLptLEnlLnif~s~S~ieKafLFDv~SKIYia-T 237 (347)
T KOG3887|consen 160 IHQRTNDELADAGLEKVQVSFYLTSIYDHSIFEAFSKVVQK-LIPQLPTLENLLNIFISNSKIEKAFLFDVLSKIYIA-T 237 (347)
T ss_pred HHHHhhHHHHhhhhccceEEEEEeeecchHHHHHHHHHHHH-HhhhchhHHHHHHHHhhccchhhhhhhhhhheeEEe-c
Confidence 333333332222210 1111222211 1222333222222 124678988887765555554322110 0000 0
Q ss_pred CCCCH--HHHHh-------------------hhchhHHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcCCCCHH
Q 010986 364 DIATK--EVFEW-------------------VLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEE 422 (496)
Q Consensus 364 ~~l~~--e~~e~-------------------~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~e 422 (496)
+.-|- ..+|- -.+.+..-+.++.+.||.|+..-|=+|..++- +.-|.|++.|...+
T Consensus 238 DS~PVdmq~YElC~d~IDV~iDl~~iYg~~~~~~~s~~d~~s~svirL~n~~vlyLrev~k~L---ALV~i~re~~~e~~ 314 (347)
T KOG3887|consen 238 DSSPVDMQSYELCCDMIDVTIDLSSIYGLKEDGKGSDYDKESSSVIRLNNTTVLYLREVNKFL---ALVCIVREDGFEKK 314 (347)
T ss_pred CCCcchhHHHHHHHhhhheeeehHHhhCCCCCCCCCchhhhhhhhhhhcCceEEeHHHhhhhe---EEEEEEccCCcccc
Confidence 00010 00000 01234466677788899999999999988764 34489998887655
Q ss_pred H
Q 010986 423 E 423 (496)
Q Consensus 423 e 423 (496)
.
T Consensus 315 g 315 (347)
T KOG3887|consen 315 G 315 (347)
T ss_pred c
Confidence 3
No 26
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=51.62 E-value=13 Score=27.87 Aligned_cols=29 Identities=28% Similarity=0.211 Sum_probs=21.9
Q ss_pred CcchHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010986 406 IPSAVECYMKQHVVSEEEAEKALWLEIAN 434 (496)
Q Consensus 406 ~~n~V~cyM~e~g~S~eeA~~~i~~~i~~ 434 (496)
+.-++.+.|..+|+|+++|.+.+++.-.+
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~Am~ 43 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQAMR 43 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 34567799999999999999999886543
No 27
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=47.10 E-value=3.4e+02 Score=27.85 Aligned_cols=87 Identities=14% Similarity=0.005 Sum_probs=54.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhc--CCCCCHHHHHhhhchhHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM--GDIATKEVFEWVLKVPKIITAS 384 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~--g~~l~~e~~e~~~~~p~l~~~~ 384 (496)
.....+.++...++.|-..+..|.. +.-+|.++|++.-..-+|.....+ ...|. + ..+++..+. .-++-+..
T Consensus 129 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~-~~~ga~~a-g~~~~~~~~---l~~~g~~l 202 (319)
T TIGR02748 129 RAHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAAS-CQLGAIAS-GANEAIVKK---LYWFGYYV 202 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHH
Confidence 3455677888889999888888743 345799999987766665543322 12211 1 123443322 24566677
Q ss_pred HHHHHHhcCccchhh
Q 010986 385 ENICRLLDDVASHKF 399 (496)
Q Consensus 385 ~~i~RL~NDI~S~~k 399 (496)
+...-+.||+..+..
T Consensus 203 G~aFQI~DDilD~~~ 217 (319)
T TIGR02748 203 GMSYQITDDILDFVG 217 (319)
T ss_pred HHHHHHHHHHHHccC
Confidence 777789999987753
No 28
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=43.11 E-value=81 Score=27.54 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=46.6
Q ss_pred hhHhHHHHhhCcccccHHHHHHHHHHHHhccCCC------CCC--chhhhHHHHHhhhcCcccchhhhccccccccc-cc
Q 010986 13 LHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSD------SDN--LYTVSLRFRLLRQQRVKISCDVFEKFKDDEGK-FK 83 (496)
Q Consensus 13 l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~------~~d--l~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~-F~ 83 (496)
-.+|+.|++|||+|-- --.|-.+-+.+... ... =-.+|++-|.||.+| +|.----+| +++ |. .+
T Consensus 14 ~~~ie~L~~lgi~R~v----A~tlv~L~~~~E~sS~~IE~~sgLRQPEVSiAMr~Lre~g-WV~~R~eKK-kGK-GRPik 86 (124)
T COG4738 14 YEIIELLRILGIPRNV----ATTLVCLAKGDEASSREIERVSGLRQPEVSIAMRYLRENG-WVDEREEKK-KGK-GRPIK 86 (124)
T ss_pred HHHHHHHHHcCCCchH----HHHHHHHhcCcchhhhhhHHhhcCCCchhHHHHHHHHHcc-ccchHHhcc-cCC-CCCce
Confidence 4689999999999963 22232222211000 112 246899999999999 565555565 433 43 23
Q ss_pred c-ccccchHHHHHHHH
Q 010986 84 A-SMINNVRGMLSLYE 98 (496)
Q Consensus 84 ~-~~~~d~~gll~Ly~ 98 (496)
. .++.+...+++-++
T Consensus 87 ~Y~Lt~~~~eIvs~ie 102 (124)
T COG4738 87 LYRLTVPFDEIVSEIE 102 (124)
T ss_pred EEEecCcHHHHHHHHH
Confidence 2 45666666665544
No 29
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=39.63 E-value=4.4e+02 Score=27.09 Aligned_cols=88 Identities=11% Similarity=-0.078 Sum_probs=55.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhc-CCCCCHHHHHhhhchhHHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM-GDIATKEVFEWVLKVPKIITASE 385 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~-g~~l~~e~~e~~~~~p~l~~~~~ 385 (496)
.....+.++...++.|-..+..|.. +.-+|.++|+.....-+|.....+ ...|. =-..+++..+. ...+-+..+
T Consensus 130 ~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~i~~KTa~lf~~~-~~~ga~lag~~~~~~~~---l~~~g~~lG 204 (323)
T PRK10888 130 KVLEVMSEAVNVIAEGEVLQLMNVN-DPDITEENYMRVIYSKTARLFEAA-AQCSGILAGCTPEQEKG---LQDYGRYLG 204 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHH---HHHHHHHHH
Confidence 3455677888889999888888754 345899999997766555543222 22221 00134443322 245666777
Q ss_pred HHHHHhcCccchhh
Q 010986 386 NICRLLDDVASHKF 399 (496)
Q Consensus 386 ~i~RL~NDI~S~~k 399 (496)
...-+.||+..+..
T Consensus 205 ~aFQi~DD~ld~~~ 218 (323)
T PRK10888 205 TAFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHHhhcccC
Confidence 77788999988854
No 30
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=36.81 E-value=26 Score=22.78 Aligned_cols=18 Identities=44% Similarity=0.569 Sum_probs=14.5
Q ss_pred HHHhcCCCCHHHHHHHHH
Q 010986 412 CYMKQHVVSEEEAEKALW 429 (496)
Q Consensus 412 cyM~e~g~S~eeA~~~i~ 429 (496)
-|.++||+|.||..+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 589999999999766554
No 31
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=35.63 E-value=5.3e+02 Score=26.84 Aligned_cols=117 Identities=19% Similarity=0.171 Sum_probs=71.0
Q ss_pred CCCC--CHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhc--hhHHHHHHHHHHHHhcCccchhhhhhcCCCcc
Q 010986 333 GYVP--SVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLK--VPKIITASENICRLLDDVASHKFEQKRGHIPS 408 (496)
Q Consensus 333 g~vP--t~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~--~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n 408 (496)
+..| ++-|+-. .|+..--++++.-++..+.++++..+-+.+ .|=+ +-+-.|++=....+.+.+.|+. |
T Consensus 174 ~~~p~l~W~EfaA---atGSTLgIF~L~a~A~~p~~t~~~a~~i~~aYFPwI----~gLHILLDy~IDq~EDr~~GdL-N 245 (330)
T PF10776_consen 174 DKYPELEWWEFAA---ATGSTLGIFALFAYAADPDLTPEDAEKIKDAYFPWI----CGLHILLDYFIDQEEDREGGDL-N 245 (330)
T ss_pred hcCCCccHHHHHH---HhccHHHHHHHHHHHcCCCCCHHHHHHHHHcccHHH----HHHHHHHHHHhhhHhHhcCCCc-e
Confidence 3455 3445544 344333444455556677788877665432 2333 3334556666666666677776 9
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHhhhHhhcccC
Q 010986 409 AVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDG 472 (496)
Q Consensus 409 ~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~ 472 (496)
.|..|- +.+++.+.+...++++-+... .+|.+--.+.++- .+-=||-.+
T Consensus 246 Fv~YY~-----~~~~~~~Rl~~f~~~A~~~~~--------~Lp~~~fHr~iv~--GLla~YLSD 294 (330)
T PF10776_consen 246 FVFYYP-----DEEEMEERLKYFVEKALEQAS--------RLPYPKFHRMIVR--GLLAMYLSD 294 (330)
T ss_pred eeeeCC-----CHHHHHHHHHHHHHHHHHHHH--------hCCCchHHHHHHH--HHHHHHhCC
Confidence 997665 578999999999998887665 3666544444443 344578655
No 32
>CHL00151 preA prenyl transferase; Reviewed
Probab=33.46 E-value=5.4e+02 Score=26.35 Aligned_cols=86 Identities=10% Similarity=-0.044 Sum_probs=52.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHH--HHhcCCCCCHHHHHhhhchhHHHHHHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTAS--FLDMGDIATKEVFEWVLKVPKIITASE 385 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~e~~e~~~~~p~l~~~~~ 385 (496)
....+.++...++.+-..+..|.. ..-+|.++|+.....=+|...-.++. -+..| .+++..+. .-.+-+..+
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~G~~lG 208 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD--ADEKDHND---FYLYGKHLG 208 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 445677888888888877776643 34579999999754444433322211 12122 34443332 345666777
Q ss_pred HHHHHhcCccchhh
Q 010986 386 NICRLLDDVASHKF 399 (496)
Q Consensus 386 ~i~RL~NDI~S~~k 399 (496)
...-+.||+..+.-
T Consensus 209 ~aFQi~DDilD~~~ 222 (323)
T CHL00151 209 LAFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHHhhccc
Confidence 77889999988754
No 33
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=32.77 E-value=88 Score=24.56 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=17.8
Q ss_pred CCCCCHHHhhhhhhhccchHHHH
Q 010986 333 GYVPSVEEYKSVALRSIAVLPVV 355 (496)
Q Consensus 333 g~vPt~eEYl~~~~~S~g~~~~~ 355 (496)
-..||.|||...+.++..+-.++
T Consensus 25 arKP~~eEy~~~aKi~~~Gi~li 47 (65)
T COG2443 25 ARKPDWEEYSKIAKITGLGILLI 47 (65)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHH
Confidence 34699999999998877655544
No 34
>smart00463 SMR Small MutS-related domain.
Probab=32.08 E-value=53 Score=26.13 Aligned_cols=23 Identities=30% Similarity=0.081 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 010986 417 HVVSEEEAEKALWLEIANGWKDL 439 (496)
Q Consensus 417 ~g~S~eeA~~~i~~~i~~~wk~l 439 (496)
||++.++|+..+...++++++.-
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999888653
No 35
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=31.34 E-value=24 Score=31.43 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHH-Hhhhhhhhcc
Q 010986 288 KLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVE-EYKSVALRSI 349 (496)
Q Consensus 288 al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~e-EYl~~~~~S~ 349 (496)
.++..+.+|++.+.+.|+ .+-.+.|++++.+.+.-++.....-+|.++ ++...+..|+
T Consensus 42 ~lwa~l~dIs~qv~~~G~----k~~~e~WK~~~~~~~~~~~~~~~~~~~gl~Gg~v~~g~sTs 100 (127)
T PF05772_consen 42 KLWAMLGDISRQVEWNGR----KLDPEDWKELFTAAFLIATGEEQRVVPGLDGGFVVLGESTS 100 (127)
T ss_dssp HHHHHHHHHHHH--BTTB-------HHHHHHHHHHHH-----S--EEEE-TTSSEEEE---TT
T ss_pred HHHHHHHHHHHHhHhcCc----cCCHHHHHHHHHHHHhhhccchhhhccCCCCCeEEEeeech
Confidence 345567888887787775 467899999999998777766656678776 5655554444
No 36
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=31.16 E-value=53 Score=26.30 Aligned_cols=24 Identities=25% Similarity=0.076 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 417 HVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 417 ~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
||++.+||+..+...+.++++.-.
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~ 27 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGI 27 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTH
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCC
Confidence 799999999999999999986544
No 37
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=31.10 E-value=57 Score=24.22 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=30.7
Q ss_pred hcCccchhhhhhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 010986 391 LDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 437 (496)
Q Consensus 391 ~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk 437 (496)
.||+-+...|+..--+ -=|.-+|. .|+|.-|||..|...|.+..+
T Consensus 2 ~~~lp~LtHeeQQ~Av-E~Iq~LMa-qGmSsgEAI~~VA~~iRe~~~ 46 (51)
T PF03701_consen 2 FNDLPSLTHEEQQQAV-ERIQELMA-QGMSSGEAIAIVAQEIREEHQ 46 (51)
T ss_pred CCCCCCCCHHHHHHHH-HHHHHHHH-hcccHHHHHHHHHHHHHHHHH
Confidence 3677776666554322 23456775 499999999999888876554
No 38
>PRK10581 geranyltranstransferase; Provisional
Probab=28.97 E-value=5e+02 Score=26.38 Aligned_cols=111 Identities=11% Similarity=0.040 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHH--HHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCc
Q 010986 317 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA--SFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 394 (496)
Q Consensus 317 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~--~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 394 (496)
..++.|-..+..|.. ..+|.++|++.-..=+|.....+. .-+..|. -+++..+. ..++-+..+...-+.||+
T Consensus 152 ~~l~~GQ~ld~~~~~--~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~-~~~~~~~~---l~~~g~~lG~aFQI~DDi 225 (299)
T PRK10581 152 AGMCGGQALDLEAEG--KQVPLDALERIHRHKTGALIRAAVRLGALSAGD-KGRRALPV---LDRYAESIGLAFQVQDDI 225 (299)
T ss_pred chhhHhhHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-CcHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 356777777777743 468999999876544443322221 1111221 12233332 245667777777899999
Q ss_pred cchhhh-h----------hcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 395 ASHKFE-Q----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 395 ~S~~kE-~----------~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
..+... . .+|.. |.+.++ ..|.|.+.+++.++++.+.+.
T Consensus 226 lD~~g~~~~~GK~~g~Dl~~gk~-T~p~l~------~~e~a~~~a~~~~~~A~~~l~ 275 (299)
T PRK10581 226 LDVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLD 275 (299)
T ss_pred ccccCChHHHCCCcchhhhcCCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 987432 2 22332 444443 247888888888888887765
No 39
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=27.69 E-value=57 Score=28.82 Aligned_cols=22 Identities=45% Similarity=0.318 Sum_probs=18.8
Q ss_pred hHHHHHhcCCCCHHHHHHHHHH
Q 010986 409 AVECYMKQHVVSEEEAEKALWL 430 (496)
Q Consensus 409 ~V~cyM~e~g~S~eeA~~~i~~ 430 (496)
=|.+.|.|.|+|.++|++.+.+
T Consensus 87 DIkLV~eQa~VsreeA~kAL~e 108 (122)
T COG1308 87 DIKLVMEQAGVSREEAIKALEE 108 (122)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3679999999999999987754
No 40
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=27.35 E-value=62 Score=29.88 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=22.4
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChh
Q 010986 413 YMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLP 453 (496)
Q Consensus 413 yM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~ 453 (496)
-|.+.|.|.. +|++.|++.|| +.+.+|++-|+|
T Consensus 126 ~~~~~Gks~~----eIR~~ID~kYk----~g~~~pTpTp~P 158 (158)
T PF13798_consen 126 QMYQEGKSPK----EIRQYIDEKYK----EGYAKPTPTPMP 158 (158)
T ss_pred HHHHcCCCHH----HHHHHHHHHHH----hCCCCCCCCCCC
Confidence 3555666644 48999999997 445677766654
No 41
>smart00400 ZnF_CHCC zinc finger.
Probab=26.52 E-value=68 Score=23.75 Aligned_cols=25 Identities=32% Similarity=0.226 Sum_probs=20.7
Q ss_pred CCCcchHHHHHhcCCCCHHHHHHHH
Q 010986 404 GHIPSAVECYMKQHVVSEEEAEKAL 428 (496)
Q Consensus 404 G~~~n~V~cyM~e~g~S~eeA~~~i 428 (496)
|.-.++|..+|+-.|+|-.||++.+
T Consensus 30 g~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 30 GAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 3345789999998899999999875
No 42
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=24.97 E-value=39 Score=28.64 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=19.0
Q ss_pred hHHHHHHHHhhccccCCchHHHHHH
Q 010986 90 VRGMLSLYEAAHLAVHGEVILDEAI 114 (496)
Q Consensus 90 ~~gll~Ly~As~l~~~gE~iL~ea~ 114 (496)
+.|+++|||-|-++--=|++||+-+
T Consensus 1 v~~yYElYRrs~ig~~L~dalD~li 25 (113)
T COG5123 1 VPGYYELYRRSMIGKVLEDALDELI 25 (113)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999988855566776654
No 43
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.24 E-value=1.3e+02 Score=30.04 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=39.8
Q ss_pred ccccccccccccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhhccCCchHHHHHHHc
Q 010986 77 DDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHAL 141 (496)
Q Consensus 77 ~~~g~F~~~~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~l~~~V~~aL 141 (496)
+.+|-|.....-|+||-..|-.+-- .... +-|=.|..||++||.. .+-++++++-|
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~-e~LLnaLRfTTKHlNd-------esTpK~ir~ll 319 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQS-ECLLNALRFTTKHLND-------ESTPKSIRHLL 319 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhh-HHHHHHHHHHHhhcCC-------CCChHHHHHHh
Confidence 5778888888899999999988742 2222 4577899999999843 23455566554
No 44
>PRK05114 hypothetical protein; Provisional
Probab=22.63 E-value=92 Score=23.81 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=29.7
Q ss_pred hcCccchhhhhhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 010986 391 LDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 437 (496)
Q Consensus 391 ~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk 437 (496)
.||+-+...|+..--+ -=|.-+|. .|+|--|||.-|...|.+..+
T Consensus 2 ~~~lp~LtHeeQQ~AV-ErIq~LMa-qGmSsgEAI~~VA~eiRe~~~ 46 (59)
T PRK05114 2 FAGLPSLTHEQQQKAV-ERIQELMA-QGMSSGEAIALVAEELRANHQ 46 (59)
T ss_pred CCCcccCCHHHHHHHH-HHHHHHHH-ccccHHHHHHHHHHHHHHHHh
Confidence 3566555555544322 23456775 499999999999888876554
No 45
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.09 E-value=61 Score=24.48 Aligned_cols=47 Identities=21% Similarity=0.204 Sum_probs=32.4
Q ss_pred cCccchhhhhhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 392 DDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 392 NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
+++.|...|+.+--| --|.=+|.| |+|--|||.-+...+.+.-|.-|
T Consensus 3 ~~lp~LtHeqQQ~AV-E~Iq~lMae-GmSsGEAIa~VA~elRe~hk~~~ 49 (60)
T COG3140 3 AGLPSLTHEQQQKAV-ERIQELMAE-GMSSGEAIALVAQELRENHKGEN 49 (60)
T ss_pred CccccccHHHHHHHH-HHHHHHHHc-cccchhHHHHHHHHHHHHhcccc
Confidence 556666666655433 234567765 99999999999888887766655
No 46
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=21.68 E-value=7.7e+02 Score=24.16 Aligned_cols=81 Identities=17% Similarity=0.051 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHh-hCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCcc
Q 010986 317 QEVILMYFTEAKWL-KEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVA 395 (496)
Q Consensus 317 ~~~~~a~l~EA~W~-~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 395 (496)
...+.+..-|.... ..+..+|.++|++.-..-+|......+..-++=-..+++..+. ..++-...+...-+.||+.
T Consensus 113 ~~~~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~afQi~DD~~ 189 (260)
T PF00348_consen 113 EALIEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQLGAILAGADEEQIEA---LREFGRHLGIAFQIRDDLL 189 (260)
T ss_dssp HHHHHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHTTSGHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhcccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHHHHHHhccchhHHHHH---HHHHHHHHHHHHhhhhhhh
Confidence 34444444443322 2334789999999887777665333222211101233444333 3567777788888999988
Q ss_pred chhhh
Q 010986 396 SHKFE 400 (496)
Q Consensus 396 S~~kE 400 (496)
.+...
T Consensus 190 d~~~~ 194 (260)
T PF00348_consen 190 DLFGD 194 (260)
T ss_dssp HHHSH
T ss_pred hccCc
Confidence 87753
No 47
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.75 E-value=55 Score=23.74 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=15.4
Q ss_pred HHHhhhcCcccchhhhcccc
Q 010986 57 FRLLRQQRVKISCDVFEKFK 76 (496)
Q Consensus 57 FRlLR~~Gy~vs~dvf~~F~ 76 (496)
+.-|+++|+.+|+++++++.
T Consensus 25 l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 25 LDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHcCcccCHHHHHHHH
Confidence 33457889999999988764
Done!