Query 010986
Match_columns 496
No_of_seqs 227 out of 893
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:25:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 3E-158 1E-162 1270.5 44.9 487 6-496 67-554 (554)
2 3m00_A Aristolochene synthase; 100.0 3E-157 1E-161 1261.4 45.4 490 2-496 59-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 6E-157 2E-161 1261.6 43.2 485 8-495 63-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 9E-152 3E-156 1228.0 47.0 486 7-495 48-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 2E-151 6E-156 1225.2 43.3 486 7-495 52-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 5E-151 2E-155 1225.1 41.1 486 7-495 81-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 5E-145 2E-149 1214.7 46.6 487 6-496 295-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 1E-144 5E-149 1203.7 49.7 484 6-496 243-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 2E-144 5E-149 1206.2 48.9 484 6-495 267-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 2E-108 7E-113 905.0 34.1 431 6-495 242-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 2.2E-51 7.5E-56 420.3 18.2 251 183-444 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 1.3E-49 4.4E-54 400.4 22.7 242 185-444 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 3.2E-48 1.1E-52 394.1 20.9 244 183-444 25-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 1.8E-46 6.3E-51 390.9 18.8 273 139-443 34-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 3.2E-33 1.1E-37 294.3 19.6 247 188-444 129-390 (433)
16 1yyq_A Trichodiene synthase; t 99.8 2.5E-18 8.7E-23 177.5 14.3 248 188-464 30-294 (374)
17 3acx_A Dehydrosqualene synthas 92.1 9.3 0.00032 37.2 18.7 207 216-456 27-245 (293)
18 4hd1_A Squalene synthase HPNC; 90.0 15 0.00051 35.8 19.9 186 233-455 40-239 (294)
19 3ipi_A Geranyltranstransferase 87.0 3.8 0.00013 40.3 10.9 142 307-464 127-278 (295)
20 3lmd_A Geranylgeranyl pyrophos 85.4 7.3 0.00025 39.4 12.3 103 307-417 160-275 (360)
21 3oyr_A Trans-isoprenyl diphosp 79.3 38 0.0013 33.9 14.8 87 307-399 151-239 (345)
22 3mzv_A Decaprenyl diphosphate 78.5 53 0.0018 32.7 15.6 104 307-417 139-255 (341)
23 3ts7_A Geranyltranstransferase 77.9 28 0.00096 34.5 13.2 111 317-440 158-281 (324)
24 1rtr_A Geranyltranstransferase 76.1 16 0.00055 35.8 10.8 110 317-440 148-270 (301)
25 3rmg_A Octaprenyl-diphosphate 75.4 63 0.0021 32.0 15.1 87 307-399 133-221 (334)
26 3lsn_A Geranyltranstransferase 71.9 38 0.0013 33.2 12.2 123 319-463 154-289 (304)
27 3m0g_A Farnesyl diphosphate sy 71.5 22 0.00075 34.8 10.4 109 317-440 147-268 (297)
28 3p8r_A Geranyltranstransferase 71.1 21 0.00071 35.1 10.1 111 317-440 158-281 (302)
29 3lom_A Geranyltranstransferase 70.8 40 0.0014 33.2 12.2 113 317-440 158-282 (313)
30 2h8o_A Geranyltranstransferase 70.7 32 0.0011 34.3 11.5 110 317-440 192-314 (335)
31 2ftz_A Geranyltranstransferase 68.7 44 0.0015 32.4 11.8 119 308-440 135-263 (284)
32 1wy0_A Geranylgeranyl pyrophos 68.5 41 0.0014 33.4 11.9 86 308-399 138-225 (342)
33 4f62_A Geranyltranstransferase 68.3 39 0.0013 33.4 11.5 110 318-440 152-274 (317)
34 3pko_A Geranylgeranyl pyrophos 67.5 74 0.0025 31.5 13.5 103 307-416 143-258 (334)
35 3p8l_A Geranyltranstransferase 65.8 37 0.0013 33.3 10.7 110 317-440 156-278 (302)
36 4dhd_A Polyprenyl synthetase; 61.9 74 0.0025 31.9 12.3 87 308-398 133-231 (358)
37 3apz_A Geranyl diphosphate syn 58.2 69 0.0024 31.8 11.3 87 307-399 153-241 (348)
38 3nf2_A Putative polyprenyl syn 57.1 1.6E+02 0.0054 29.3 15.2 85 308-398 144-230 (352)
39 3npk_A Geranyltranstransferase 53.6 1E+02 0.0036 29.8 11.4 127 316-463 144-280 (291)
40 3uca_A Geranyltranstransferase 51.0 87 0.003 30.9 10.5 111 317-440 180-303 (324)
41 3pde_A Farnesyl-diphosphate sy 50.5 70 0.0024 31.4 9.7 109 318-440 156-277 (309)
42 3llw_A Geranyltranstransferase 49.2 55 0.0019 32.2 8.7 113 316-440 158-280 (311)
43 2j1p_A Geranylgeranyl pyrophos 47.2 38 0.0013 33.0 7.1 108 318-440 161-271 (293)
44 1rqj_A Geranyltranstransferase 47.1 92 0.0031 30.2 9.9 110 317-440 152-275 (299)
45 1wmw_A Geranylgeranyl diphosph 42.5 1E+02 0.0036 30.2 9.6 84 308-398 131-218 (330)
46 2qis_A Farnesyl pyrophosphate 36.6 1.7E+02 0.0059 29.3 10.3 88 308-399 177-271 (374)
47 2azj_A Geranylgeranyl pyrophos 36.4 1.8E+02 0.006 28.1 10.0 131 308-463 136-274 (289)
48 1uby_A FPS, farnesyl diphospha 36.0 1.5E+02 0.0052 29.6 9.7 88 308-399 170-264 (367)
49 3vj8_A Squalene synthase; farn 33.7 3.5E+02 0.012 26.6 20.6 245 206-477 13-284 (343)
50 3tc1_A Octaprenyl pyrophosphat 30.0 3.1E+02 0.011 26.7 10.6 101 307-417 122-235 (315)
51 2q80_A Geranylgeranyl pyrophos 28.8 2.7E+02 0.0093 26.8 9.9 84 307-398 111-195 (301)
52 1yhl_A Farnesyl pyrophosphate 28.3 1.5E+02 0.0051 29.5 8.1 105 308-417 152-284 (362)
53 3lk5_A Geranylgeranyl pyrophos 28.2 4.6E+02 0.016 26.2 14.8 77 316-398 184-263 (380)
54 2e8v_A Geranylgeranyl pyrophos 28.0 1.2E+02 0.004 30.0 7.2 86 308-399 132-221 (340)
55 3fau_A NEDD4-binding protein 2 27.8 48 0.0016 25.5 3.4 23 417-439 6-28 (82)
56 2her_A Fragment, farnesyl pyro 27.5 4.6E+02 0.016 26.1 11.6 86 308-398 169-260 (368)
57 3aqb_B Component B of hexapren 27.0 1.7E+02 0.0058 28.6 8.2 88 307-399 130-218 (325)
58 1v4e_A Octoprenyl-diphosphate 26.8 2.8E+02 0.0095 26.8 9.6 84 307-400 127-212 (299)
59 2ee7_A Sperm flagellar protein 24.4 72 0.0025 27.1 4.2 67 185-252 12-85 (127)
60 3kra_B Geranyl diphosphate syn 22.8 1E+02 0.0034 29.6 5.4 69 319-394 151-221 (274)
61 3mav_A Farnesyl pyrophosphate 22.8 5.6E+02 0.019 25.6 11.3 88 308-398 179-292 (395)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=2.8e-158 Score=1270.46 Aligned_cols=487 Identities=48% Similarity=0.850 Sum_probs=462.5
Q ss_pred ccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhccCCCCCCchhhhHHHHHhhhcCcccchhhhccccccccccccc
Q 010986 6 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKAS 85 (496)
Q Consensus 6 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~F~~~ 85 (496)
..|++++|+|||+||||||+|||++||+++|++||+++.....||++|||+|||||||||+||||||++|+|++|+|+++
T Consensus 67 ~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~ 146 (554)
T 3g4d_A 67 MANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSS 146 (554)
T ss_dssp CSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHH
T ss_pred ccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccc
Confidence 56899999999999999999999999999999999851112379999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhhccCCchHHHHHHHccCccccccchhHHHhhHHhhCCCC
Q 010986 86 MINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDD 165 (496)
Q Consensus 86 ~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~ 165 (496)
+.+|++||||||||||+++|||+|||||+.||++||++.+.++ +++|+++|+|||++|||+++||||||+||++|++++
T Consensus 147 l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~ 225 (554)
T 3g4d_A 147 VTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASL-DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIE 225 (554)
T ss_dssp HHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSST
T ss_pred cccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCc
Confidence 9999999999999999999999999999999999999988766 788999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHH
Q 010986 166 LHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLIS 245 (496)
Q Consensus 166 ~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~ 245 (496)
++|++||||||||||+||++||+||++++|||+++||.++|||+|||++|||||++ |++|||+||.+|+++||+++|++
T Consensus 226 ~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~-~~~feP~~s~~R~~~aK~~~l~t 304 (554)
T 3g4d_A 226 SHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWIS-GVYFEPQYSLGRKMLTKVIAMAS 304 (554)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHH-HhhCCccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997789999999999999999 99999999999999999999999
Q ss_pred hhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHH
Q 010986 246 LIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFT 325 (496)
Q Consensus 246 viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~ 325 (496)
++||+||+|||+|||+.||+||+|||++++++||+|||+||.+++++++|++.++.++||+++++|++++|+++++||++
T Consensus 305 viDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~ 384 (554)
T 3g4d_A 305 IVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLV 384 (554)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888999889999999999999999999
Q ss_pred HHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCC
Q 010986 326 EAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGH 405 (496)
Q Consensus 326 EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~ 405 (496)
||+|+++||+||+||||+||++|+|+++++++++++||+.+|+++++|+.++|+|+++++.|+||+|||+||++|+++|+
T Consensus 385 EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~ 464 (554)
T 3g4d_A 385 EAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRRED 464 (554)
T ss_dssp HHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHhhhHhhcccCCCCCCCChh-HHH
Q 010986 406 IPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKD 484 (496)
Q Consensus 406 ~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~~D~~t~~~~-~k~ 484 (496)
++|+|+|||+|+|+|+|+|+++++++|+++||+|| ++|++++++|++|+++++|+||++++||+++ ||||.|+. ||+
T Consensus 465 van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN-~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t~~~~~~k~ 542 (554)
T 3g4d_A 465 DCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKG 542 (554)
T ss_dssp CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHHSSSCSSCHHHHHHHHHHHHHHHHHSCC------CCCHHHHH
T ss_pred ccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHH
Confidence 99999999999999999999999999999999999 9999988999999999999999999999999 99999965 999
Q ss_pred HHHHhhcCCcCC
Q 010986 485 QVALVLKDPVTF 496 (496)
Q Consensus 485 ~i~~l~~~pi~~ 496 (496)
+|++||++|||+
T Consensus 543 ~i~~ll~~Pi~l 554 (554)
T 3g4d_A 543 GITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHTCCCCC
T ss_pred HHHHHhcCCCCC
Confidence 999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=3.1e-157 Score=1261.45 Aligned_cols=490 Identities=44% Similarity=0.793 Sum_probs=468.5
Q ss_pred ccccccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhccCCCCCCchhhhHHHHHhhhcCcccchhhhccccccccc
Q 010986 2 ITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGK 81 (496)
Q Consensus 2 ~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~ 81 (496)
|.++..|++++|+|||+||||||+|||++||+++|++||++ +....||++|||+|||||||||+||||||++|+|++|+
T Consensus 59 l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~-~~~~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~ 137 (550)
T 3m00_A 59 LLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGK 137 (550)
T ss_dssp HTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHH-CCCCSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSC
T ss_pred HHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHh-cccCCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCC
Confidence 33335689999999999999999999999999999999986 32247999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhhccCCchHHHHHHHccCccccccchhHHHhhHH-h
Q 010986 82 FKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLN-M 160 (496)
Q Consensus 82 F~~~~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~-~ 160 (496)
|++++.+|++||||||||||+++|||+|||||+.||++||++.+.++ +++|+++|+|||++|||+++||||||+||+ +
T Consensus 138 F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~ 216 (550)
T 3m00_A 138 FKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL-KSPLREQVTHALEQCLHKGVPRVETRFFISSI 216 (550)
T ss_dssp BCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGGGC-CTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHT
T ss_pred ccccchhchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcc-CccHHHHHHHHhCCCccCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988766 788999999999999999999999999999 9
Q ss_pred hCCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHH
Q 010986 161 YSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKI 240 (496)
Q Consensus 161 y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~ 240 (496)
|++++++|++||||||||||+||++||+||++++||||++||.++|||||||++|||||++ |++|||+||.+|+++||+
T Consensus 217 Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~-~~~feP~~s~~R~~~aK~ 295 (550)
T 3m00_A 217 YDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTL-GVYFEPQYSQARVMLVKT 295 (550)
T ss_dssp GGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHH
T ss_pred hcccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHH-HhhCCccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997799999999999999999 999999999999999999
Q ss_pred HHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHH
Q 010986 241 ICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVI 320 (496)
Q Consensus 241 ~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~ 320 (496)
++|++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+|+++++|++.++.++||+++++|++++|++++
T Consensus 296 ~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~ 375 (550)
T 3m00_A 296 ISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIV 375 (550)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888998899999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhh
Q 010986 321 LMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFE 400 (496)
Q Consensus 321 ~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE 400 (496)
+||++||+|+++||+||+||||+||++|+|++++++++++|+ +.+|+++++|+.++|+|+++++.|+||+|||+||++|
T Consensus 376 ~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E 454 (550)
T 3m00_A 376 RNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE 454 (550)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHH
Confidence 999999999999999999999999999999999999998887 6799999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHhhhHhhcccCCCCCCCCh
Q 010986 401 QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSY 480 (496)
Q Consensus 401 ~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~~D~~t~~~ 480 (496)
++||+++|+|+|||+|+|+|+|+|++++++||+++||+|| ++|++++++|++|+++++|+||++++||++++||||.|+
T Consensus 455 ~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN-~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~ 533 (550)
T 3m00_A 455 KSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPE 533 (550)
T ss_dssp HHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCH
T ss_pred HhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 9999999999999999999999999999999999999999 999998899999999999999999999998449999998
Q ss_pred h-HHHHHHHhhcCCcCC
Q 010986 481 K-MKDQVALVLKDPVTF 496 (496)
Q Consensus 481 ~-~k~~i~~l~~~pi~~ 496 (496)
. ||++|++||++|||+
T Consensus 534 ~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 534 KVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhhCCCCC
Confidence 5 999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=6.4e-157 Score=1261.60 Aligned_cols=485 Identities=36% Similarity=0.630 Sum_probs=464.9
Q ss_pred chhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhc-c--CCCCCCchhhhHHHHHhhhcCcccchhhhcccccccccccc
Q 010986 8 EISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-L--GSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKA 84 (496)
Q Consensus 8 d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~--~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~F~~ 84 (496)
+++++|+|||+||||||+|||++||+++|++||+. . .....||++|||+|||||||||+||||||++|+|++|+|++
T Consensus 63 ~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~ 142 (555)
T 3n0f_A 63 EFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLE 142 (555)
T ss_dssp CHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTCHHHHHTTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCG
T ss_pred CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchh
Confidence 79999999999999999999999999999999983 0 11247999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhhccCCchHHHHHHHccCccccccchhHHHhhHHhhCCC
Q 010986 85 SMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRD 164 (496)
Q Consensus 85 ~~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~ 164 (496)
++++||+||||||||||+++|||+|||||+.||++||++.+....+++|+++|+|||++|||+++||||||+||++|+++
T Consensus 143 ~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~ 222 (555)
T 3n0f_A 143 NLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKK 222 (555)
T ss_dssp GGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHTCCHHHHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTC
T ss_pred hhhhhhHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999977532378899999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHH
Q 010986 165 DLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLI 244 (496)
Q Consensus 165 ~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~ 244 (496)
+++|++||||||||||+||++||+||++++|||+++||.++|||+|||++|||||++ |++|||+||.+|+++||+++|+
T Consensus 223 ~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~-~~~feP~~s~~R~~~aK~~~l~ 301 (555)
T 3n0f_A 223 EDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAV-GVAFEPQYSDCRNSVAKMFSFV 301 (555)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHH-HhhcCccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997789999999999999999 9999999999999999999999
Q ss_pred HhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Q 010986 245 SLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYF 324 (496)
Q Consensus 245 ~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l 324 (496)
+++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++|++.++.+.+|.++++|++++|+++++||+
T Consensus 302 tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl 381 (555)
T 3n0f_A 302 TIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFL 381 (555)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876666666999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcC
Q 010986 325 TEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRG 404 (496)
Q Consensus 325 ~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG 404 (496)
+||+|+.+||+||+||||+||.+|+|+++++++++++||+.+|+++++|+.++|+++++++.|+||+|||+||++|+++|
T Consensus 382 ~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG 461 (555)
T 3n0f_A 382 QEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARG 461 (555)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHhhhHhhcccCCCCCCCChh-HH
Q 010986 405 HIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MK 483 (496)
Q Consensus 405 ~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~~D~~t~~~~-~k 483 (496)
+++|+|+|||+|+|+|+|+|+++++++|+++||+|| ++|++++++|++|+++++|+||++++||+++ ||||.|+. ||
T Consensus 462 ~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN-~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k 539 (555)
T 3n0f_A 462 ETANSVSCYMRTKGISEELATESVMNLIDETWKKMN-KEKLGGSLFAKPFVETAINLARQSHCTYHNG-DAHTSPDELTR 539 (555)
T ss_dssp CCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC----CCHHHHHH
T ss_pred CcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHH
Confidence 999999999999999999999999999999999999 9999988999999999999999999999999 99999975 99
Q ss_pred HHHHHhhcCCcC
Q 010986 484 DQVALVLKDPVT 495 (496)
Q Consensus 484 ~~i~~l~~~pi~ 495 (496)
++|++||++|||
T Consensus 540 ~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 540 KRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHTTSCCC
T ss_pred HHHHHHHhcCCC
Confidence 999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=9.3e-152 Score=1227.97 Aligned_cols=486 Identities=33% Similarity=0.587 Sum_probs=469.8
Q ss_pred cchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhc-cC-----CC-CCCchhhhHHHHHhhhcCcccchhhhccccccc
Q 010986 7 DEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG-----SD-SDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDE 79 (496)
Q Consensus 7 ~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~-----~~-~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~ 79 (496)
.|++++|+|||+||||||+|||++||+++|++||++ .. .+ ..||++|||+|||||||||+||||||++|||++
T Consensus 48 ~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~ 127 (543)
T 2ong_A 48 TDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEE 127 (543)
T ss_dssp CCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTT
T ss_pred cCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCC
Confidence 489999999999999999999999999999999986 11 11 469999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhh-ccCCchHHHHHHHccCccccccchhHHHhhH
Q 010986 80 GKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR-VISNNLAEQIQHALRLPLRKALPRLEARYYL 158 (496)
Q Consensus 80 g~F~~~~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rlear~yi 158 (496)
|+|++++++||+||||||||||+++|||+|||||+.||++||++.+.+ +.+++|+++|+|||++|||+++||||||+||
T Consensus 128 g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI 207 (543)
T 2ong_A 128 GEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWI 207 (543)
T ss_dssp SSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHH
T ss_pred CCccchhhhccHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876 4367899999999999999999999999999
Q ss_pred HhhCCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHH
Q 010986 159 NMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVS 238 (496)
Q Consensus 159 ~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~a 238 (496)
++|++++++|++||||||||||+||++||+||++++|||+++||.+++||+|||+++||||++ |++|||++|.+|+++|
T Consensus 208 ~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~-a~~feP~~s~~Rl~~a 286 (543)
T 2ong_A 208 EWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNT-GIIEPRQHASARIMMG 286 (543)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHH-HHTCSTTCHHHHHHHH
T ss_pred HHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHH-HhccCCCccHHHHHHH
Confidence 999999999999999999999999999999999999999999998779999999999999999 9999999999999999
Q ss_pred HHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHH
Q 010986 239 KIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQE 318 (496)
Q Consensus 239 K~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~ 318 (496)
|+++|+|++||+||+|||++|++.||+||+|||++++++||+|||+||.++++++++++.++.+.+++++++|++++|++
T Consensus 287 K~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~ 366 (543)
T 2ong_A 287 KVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVD 366 (543)
T ss_dssp HHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887777677999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchh
Q 010986 319 VILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHK 398 (496)
Q Consensus 319 ~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~ 398 (496)
++++|++||+|+.+||+||+||||++|.+|+|+++++++++++||+.+|+++++|+.++|+++++++.|+||+|||+||+
T Consensus 367 l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~ 446 (543)
T 2ong_A 367 LADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSV 446 (543)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHh-hccCCCChhHHHHHHHHHhhhHhhcccCCCCCC
Q 010986 399 FEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEL-LNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYT 477 (496)
Q Consensus 399 kE~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~-l~~~~~p~~~~~~~~n~aR~~~~~Y~~~~D~~t 477 (496)
+|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+|| ++| ++++++|++|+++++|+||+++++|+++ ||||
T Consensus 447 ~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln-~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~-D~~t 524 (543)
T 2ong_A 447 EEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMN-AERVSKDSPFGKDFIGCAVDLGRMAQLMYHNG-DGHG 524 (543)
T ss_dssp HHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH-HHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSC-STTS
T ss_pred hccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHhccCCCCCCHHHHHHHHHHHHeehhheeCC-CCCC
Confidence 999999999999999999999999999999999999999999 999 9988899999999999999999999999 9999
Q ss_pred CChh-HHHHHHHhhcCCcC
Q 010986 478 NSYK-MKDQVALVLKDPVT 495 (496)
Q Consensus 478 ~~~~-~k~~i~~l~~~pi~ 495 (496)
.|+. ||++|++||++|||
T Consensus 525 ~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 525 TQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp SSCTTHHHHHHHHHTSCC-
T ss_pred CccHHHHHHHHHHhccCCC
Confidence 9975 99999999999996
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.8e-151 Score=1225.18 Aligned_cols=486 Identities=35% Similarity=0.644 Sum_probs=456.1
Q ss_pred cchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhcc----CC--CCCCchhhhHHHHHhhhcCcccchhhhcccccccc
Q 010986 7 DEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDL----GS--DSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEG 80 (496)
Q Consensus 7 ~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~----~~--~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g 80 (496)
.|++++|++||+||||||+|||++||+++|++||++. .. ...||++|||+|||||||||+||||||++|||++|
T Consensus 52 ~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g 131 (549)
T 1n1b_A 52 MEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKG 131 (549)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTS
T ss_pred cCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCC
Confidence 4899999999999999999999999999999999851 11 14799999999999999999999999999999999
Q ss_pred -ccccccccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhh---ccCCchHHHHHHHccCccccccchhHHHh
Q 010986 81 -KFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR---VISNNLAEQIQHALRLPLRKALPRLEARY 156 (496)
Q Consensus 81 -~F~~~~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~---~~~~~l~~~V~~aL~~P~~~~~~rlear~ 156 (496)
+|++++++||+||||||||||+++|||+|||||+.||++||++.+.+ +.+++|+++|+|||++|||+++||||||+
T Consensus 132 ~~F~~~l~~d~~glL~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~ 211 (549)
T 1n1b_A 132 IDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARW 211 (549)
T ss_dssp SSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHH
T ss_pred CccchhhhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999875 33678999999999999999999999999
Q ss_pred hHHhhCCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHH
Q 010986 157 YLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRIL 236 (496)
Q Consensus 157 yi~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~ 236 (496)
||++|++++++|++||||||||||+||++||+||++++|||+++||.+++||+|||+++||||++ |++|||++|.+|++
T Consensus 212 yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~-a~~feP~~s~~Rl~ 290 (549)
T 1n1b_A 212 FIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAV-GMFEPHQHGYQRKM 290 (549)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHH-HHCCSTTCHHHHHH
T ss_pred HHHHhcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHH-HHhcCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999998779999999999999999 99999999999999
Q ss_pred HHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHH
Q 010986 237 VSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTM 316 (496)
Q Consensus 237 ~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w 316 (496)
+||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.++++++++++.++.+.+++++++|++++|
T Consensus 291 ~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w 370 (549)
T 1n1b_A 291 AATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSV 370 (549)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877766679999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHH-HHhhhchhHHHHHHHHHHHHhcCcc
Q 010986 317 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEV-FEWVLKVPKIITASENICRLLDDVA 395 (496)
Q Consensus 317 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~-~e~~~~~p~l~~~~~~i~RL~NDI~ 395 (496)
++++++|++||+|+.+||+||+||||++|.+|+|+++++++++++||+.+|+++ ++|+.++|+++++++.|+||+|||+
T Consensus 371 ~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~ 450 (549)
T 1n1b_A 371 VDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLG 450 (549)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred chhhhhhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHhhhHhhcccCCCC
Q 010986 396 SHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDR 475 (496)
Q Consensus 396 S~~kE~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~~D~ 475 (496)
||++|+++|+++|+|+|||+|+|+|+|||+++++++|+++||++| ++|++++++|++|+++++|+||++++||+++ ||
T Consensus 451 S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln-~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~-Dg 528 (549)
T 1n1b_A 451 TSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMN-TAIAAGYPFPDGMVAGAANIGRVAQFIYLHG-DG 528 (549)
T ss_dssp ---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHTCCSSCHHHHHHHHHHHHHHHHHTTTS-CC
T ss_pred hhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHeeehheeCC-CC
Confidence 999999999999999999999999999999999999999999999 9999988999999999999999999999999 99
Q ss_pred CCCChh-HHHHHHHhhcCCcC
Q 010986 476 YTNSYK-MKDQVALVLKDPVT 495 (496)
Q Consensus 476 ~t~~~~-~k~~i~~l~~~pi~ 495 (496)
||.|+. ||++|++||++|||
T Consensus 529 ~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 529 FGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp C----CHHHHHHHHHHTSCCC
T ss_pred CCCCcHHHHHHHHHHhcCCCC
Confidence 999976 99999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=5.2e-151 Score=1225.08 Aligned_cols=486 Identities=36% Similarity=0.597 Sum_probs=448.9
Q ss_pred cchhhhhhHhHHHHhhCcccccHHHHHHHHHHHH-hccCCCCCCchhhhHHHHHhhhcCcccchhhhcccccccc-cccc
Q 010986 7 DEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLA-NDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEG-KFKA 84 (496)
Q Consensus 7 ~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~-~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g-~F~~ 84 (496)
.|++++|+|||+||||||+|||++||+++|++|| ++......||++|||+|||||||||+||||||++|||++| +|++
T Consensus 81 ~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~ 160 (569)
T 2j5c_A 81 VDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKP 160 (569)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCSCTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCG
T ss_pred ccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCcccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCcccc
Confidence 4899999999999999999999999999999999 7512245799999999999999999999999999999999 9999
Q ss_pred ccccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhhccCCchHHHHHHHccCccccccchhHHHhhHHhhCCC
Q 010986 85 SMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRD 164 (496)
Q Consensus 85 ~~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~ 164 (496)
++++||+||||||||||+++|||+|||||+.||++||++.+.++.+++|+++|+|||++|||+++||||||+||++|+++
T Consensus 161 ~l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~ 240 (569)
T 2j5c_A 161 SLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRR 240 (569)
T ss_dssp GGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTC
T ss_pred chhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999988765467899999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHH
Q 010986 165 DLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLI 244 (496)
Q Consensus 165 ~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~ 244 (496)
+++|++||||||||||+||++||+||++++|||+++||.+++||+|||+++||||++ |++|||++|.+|+++||+++|+
T Consensus 241 ~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~-a~~feP~~S~~Rl~~aK~~~li 319 (569)
T 2j5c_A 241 PDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTT-GVVERRQHGYERIMLTKINALV 319 (569)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHH-HHCCCGGGHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH-HhhcCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998779999999999999999 9999999999999999999999
Q ss_pred HhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Q 010986 245 SLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYF 324 (496)
Q Consensus 245 ~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l 324 (496)
|++||+||+|||++|++.||+||+|||++++++||+|||+||.++++++++++.++.+.+++++++|++++|++++++|+
T Consensus 320 tviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl 399 (569)
T 2j5c_A 320 TTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYL 399 (569)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887777677999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcC
Q 010986 325 TEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRG 404 (496)
Q Consensus 325 ~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG 404 (496)
+||+|+.+||+||+||||+||.+|+|+++++++++++||+.+|+++++|+.++|+++++++.|+||+|||+||++|+++|
T Consensus 400 ~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG 479 (569)
T 2j5c_A 400 IEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERG 479 (569)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHhhhHhhcccCCCCCCCChh-HH
Q 010986 405 HIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MK 483 (496)
Q Consensus 405 ~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~~D~~t~~~~-~k 483 (496)
+++|+|+|||+|+|+|+|+|+++++++|+++||+|| ++|++ +++|++|+++++|+||+++++|+++.||||.|+. ||
T Consensus 480 ~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln-~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k 557 (569)
T 2j5c_A 480 DVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMN-KEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVN 557 (569)
T ss_dssp --CCHHHHC------CCHHHHHHHHHHHHHHHHHHH-HHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHH
T ss_pred CccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHH
Confidence 999999999999999999999999999999999999 99999 8999999999999999999999886699999965 99
Q ss_pred HHHHHhhcCCcC
Q 010986 484 DQVALVLKDPVT 495 (496)
Q Consensus 484 ~~i~~l~~~pi~ 495 (496)
++|++||++|||
T Consensus 558 ~~i~~ll~~pi~ 569 (569)
T 2j5c_A 558 KMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHHHhccCCC
Confidence 999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=4.5e-145 Score=1214.73 Aligned_cols=487 Identities=34% Similarity=0.597 Sum_probs=454.2
Q ss_pred ccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhc-cC--------CCCCCchhhhHHHHHhhhcCcccchhhhcccc
Q 010986 6 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG--------SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFK 76 (496)
Q Consensus 6 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~--------~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~ 76 (496)
+.|++++|++||+||||||+|||++||+++|++||+. .. ....||++|||+|||||||||+||||||++|+
T Consensus 295 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 374 (817)
T 3sdr_A 295 PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFK 374 (817)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHh
Confidence 4688999999999999999999999999999999985 11 11469999999999999999999999999999
Q ss_pred cccccccccc---ccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhhc-------cCCchHHHHHHHccCccc
Q 010986 77 DDEGKFKASM---INNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRV-------ISNNLAEQIQHALRLPLR 146 (496)
Q Consensus 77 ~~~g~F~~~~---~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~-------~~~~l~~~V~~aL~~P~~ 146 (496)
|++|+|++++ .+|++||||||||||+++|||+|||||+.||++||++.+.+. .+++|++||+|||++|||
T Consensus 375 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~ 454 (817)
T 3sdr_A 375 DANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWH 454 (817)
T ss_dssp CC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCST
T ss_pred hcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchh
Confidence 9999999854 699999999999999999999999999999999999987531 146799999999999999
Q ss_pred cccchhHHHhhHHhhCCCCc------------CcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHH
Q 010986 147 KALPRLEARYYLNMYSRDDL------------HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 214 (496)
Q Consensus 147 ~~~~rlear~yi~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~v 214 (496)
+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||++|+. +|||+|||++
T Consensus 455 ~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~-~l~faRdr~v 533 (817)
T 3sdr_A 455 ASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLP-LFTFARERPL 533 (817)
T ss_dssp TCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGG-GCTTSCCCHH
T ss_pred ccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCCC-cCccHHHHHH
Confidence 99999999999999998875 4999999999999999999999999999999999995 8999999999
Q ss_pred HHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHH
Q 010986 215 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYN 294 (496)
Q Consensus 215 e~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ 294 (496)
|||||++ |++|||+||.+|++|||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++
T Consensus 534 e~Yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~ 612 (817)
T 3sdr_A 534 EFYFLVA-AGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVH 612 (817)
T ss_dssp HHHHHHH-TTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHH-HHHHHHHhcCCCCCHHHHHh
Q 010986 295 EAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLP-VVTASFLDMGDIATKEVFEW 373 (496)
Q Consensus 295 ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~-~~~~~~~~~g~~l~~e~~e~ 373 (496)
|++.++.+.+|.++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++ ++.++++++|+.+|+++++|
T Consensus 613 e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~ 692 (817)
T 3sdr_A 613 EVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEK 692 (817)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHT
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhc
Confidence 99877655545599999999999999999999999999999999999999999999999 88888999999999999999
Q ss_pred hh--chhHHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCC
Q 010986 374 VL--KVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH-VVSEEEAEKALWLEIANGWKDLNYEELLNLIAM 450 (496)
Q Consensus 374 ~~--~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~-g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~ 450 (496)
+. +.|+|+++++.|+||+|||+||++|++||+++|+|+|||+|| |+|+|+|+++++++|+++||+|| ++|++++++
T Consensus 693 ~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln-~e~l~~~~~ 771 (817)
T 3sdr_A 693 VDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELT-REFLKPDDV 771 (817)
T ss_dssp TCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHH-HHHHSCCSS
T ss_pred ccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCC
Confidence 76 456999999999999999999999999999999999999999 79999999999999999999999 999998899
Q ss_pred ChhHHHHHHHHHhhhHhhcccCCCCCCCChh-HHHHHHHhhcCCcCC
Q 010986 451 PLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 496 (496)
Q Consensus 451 p~~~~~~~~n~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~~ 496 (496)
|++|+++++|+||++++||+++ ||||.|+. ||++|++||++||++
T Consensus 772 p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 772 PFACKKMLFEETRVTMVIFKDG-DGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSC-CSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999 99999976 999999999999986
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.3e-144 Score=1203.71 Aligned_cols=484 Identities=30% Similarity=0.534 Sum_probs=454.7
Q ss_pred ccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhc-cC--------CCCCCchhhhHHHHHhhhcCcccchhhhcccc
Q 010986 6 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG--------SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFK 76 (496)
Q Consensus 6 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~--------~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~ 76 (496)
+.|++++|++||+||||||+|||++||+++|++||+. .. ....||++|||+|||||||||+||||||++|+
T Consensus 243 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 322 (764)
T 3p5p_A 243 SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFK 322 (764)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhh
Confidence 4689999999999999999999999999999999985 11 11469999999999999999999999999999
Q ss_pred cccccccc---ccccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhh--ccCCchHHHHHHHccCccccccch
Q 010986 77 DDEGKFKA---SMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR--VISNNLAEQIQHALRLPLRKALPR 151 (496)
Q Consensus 77 ~~~g~F~~---~~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~r 151 (496)
|++|+|++ ++.+|++||||||||||+++|||+|||||+.||++||++.+.+ ..+++|++||+|||++|||+++||
T Consensus 323 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~R 402 (764)
T 3p5p_A 323 DENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPR 402 (764)
T ss_dssp CTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHH
T ss_pred cCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchH
Confidence 99999997 4689999999999999999999999999999999999998763 236889999999999999999999
Q ss_pred hHHHhhHHhhCCCCc------------CcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHH
Q 010986 152 LEARYYLNMYSRDDL------------HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFW 219 (496)
Q Consensus 152 lear~yi~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~ 219 (496)
||||+||++|++++. +|++||||||||||+||++||+||++++||||++|+. +|||+|||++|||||
T Consensus 403 lear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l~-~l~faRdr~ve~Yfw 481 (764)
T 3p5p_A 403 LEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYFS 481 (764)
T ss_dssp HHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-TTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCCC-cCccHHHHHHHHHHH
Confidence 999999999998865 4999999999999999999999999999999999995 899999999999999
Q ss_pred HhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHH
Q 010986 220 TLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 299 (496)
Q Consensus 220 ~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~ 299 (496)
++ | |||+||.+|++|||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++|++.+
T Consensus 482 ~~-~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~ 558 (764)
T 3p5p_A 482 SA-T--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNND 558 (764)
T ss_dssp TC-C--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-h--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 99 8 99999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHH-hCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchh
Q 010986 300 LAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVP 378 (496)
Q Consensus 300 ~~~-~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p 378 (496)
+.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++.+++++|+.+|+++++|+..+|
T Consensus 559 ~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~ 637 (764)
T 3p5p_A 559 VVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPS 637 (764)
T ss_dssp HHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTS
T ss_pred HHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhH
Confidence 655 666 999999999999999999999999999999999999999999999999999999999999999999976679
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhHHHhhc-cCCCChhHHH
Q 010986 379 KIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH-VVSEEEAEKALWLEIANGWKDLNYEELLN-LIAMPLPLLG 456 (496)
Q Consensus 379 ~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~-g~S~eeA~~~i~~~i~~~wk~ln~~~~l~-~~~~p~~~~~ 456 (496)
+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+|| ++|++ ++++|++|++
T Consensus 638 ~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln-~e~l~~~~~~p~~~~~ 716 (764)
T 3p5p_A 638 NMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEAS-FEYFKPSNDIPMGCKS 716 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH-HHHHSCCSSSCHHHHH
T ss_pred HHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHhhCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999 79999999999999999999999 99997 7789999999
Q ss_pred HHHHHHhhhHhhcccCCCCCCCChh-HHHHHHHhhcCCcCC
Q 010986 457 PVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 496 (496)
Q Consensus 457 ~~~n~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~~ 496 (496)
+++|+||++++||+++ ||||.|+. ||++|++||++||++
T Consensus 717 ~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 717 FIFNLRLCVQIFYKFI-DGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHTHHHHHHHSCC--------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhcCC-CCCCCCcHHHHHHHHHHHhcCCcc
Confidence 9999999999999999 99999976 999999999999975
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.5e-144 Score=1206.22 Aligned_cols=484 Identities=32% Similarity=0.563 Sum_probs=457.9
Q ss_pred ccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhc-cC--------CCCCCchhhhHHHHHhhhcCcccchhhhcccc
Q 010986 6 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG--------SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFK 76 (496)
Q Consensus 6 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~--------~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~ 76 (496)
+.|++++|++||+||||||+|||++||+++|++||++ .. ....||++|||+|||||||||+||||||++|+
T Consensus 267 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 346 (785)
T 3s9v_A 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFR 346 (785)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4688999999999999999999999999999999985 11 12469999999999999999999999999999
Q ss_pred cccccccccc---ccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhh-------ccCCchHHHHHHHccCccc
Q 010986 77 DDEGKFKASM---INNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR-------VISNNLAEQIQHALRLPLR 146 (496)
Q Consensus 77 ~~~g~F~~~~---~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~-------~~~~~l~~~V~~aL~~P~~ 146 (496)
|++|+|++++ .+|++||||||||||+++|||+|||||+.||++||++.+.+ ..+++|++||+|||++|||
T Consensus 347 d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~ 426 (785)
T 3s9v_A 347 DENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWH 426 (785)
T ss_dssp CTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGG
T ss_pred hcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccc
Confidence 9999999855 79999999999999999999999999999999999998753 1267899999999999999
Q ss_pred cccchhHHHhhHHhhCCCCc------------CcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHH
Q 010986 147 KALPRLEARYYLNMYSRDDL------------HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 214 (496)
Q Consensus 147 ~~~~rlear~yi~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~v 214 (496)
+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||++|+. +|||+|||++
T Consensus 427 ~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~-~l~faRdr~v 505 (785)
T 3s9v_A 427 KSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFT-DLNFTRERVT 505 (785)
T ss_dssp GCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-SCSSSCCCHH
T ss_pred cCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCC-cCccHHHHHH
Confidence 99999999999999998875 4999999999999999999999999999999999995 8999999999
Q ss_pred HHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHH
Q 010986 215 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYN 294 (496)
Q Consensus 215 e~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ 294 (496)
|||||++ |++|||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++
T Consensus 506 e~Yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~n 584 (785)
T 3s9v_A 506 EIYFSPA-SFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFN 584 (785)
T ss_dssp HHHHHHH-HHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHh
Q 010986 295 EAEEELAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEW 373 (496)
Q Consensus 295 ei~~~~~~-~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~ 373 (496)
|++.++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++++++++++||+.+|+++++|
T Consensus 585 ei~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~ 663 (785)
T 3s9v_A 585 DIAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSK 663 (785)
T ss_dssp HHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTT
T ss_pred HHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhc
Confidence 99877655 666 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCCh
Q 010986 374 VLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH-VVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPL 452 (496)
Q Consensus 374 ~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~-g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~ 452 (496)
+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|| |+|+|+|+++++++|+++||+|| ++|++++ +|+
T Consensus 664 ~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln-~e~l~~~-~p~ 741 (785)
T 3s9v_A 664 IDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELN-REFVNNK-IPD 741 (785)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHSC-CCH
T ss_pred ccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCC-CCH
Confidence 76669999999999999999999999999999999999999999 89999999999999999999999 9999988 999
Q ss_pred hHHHHHHHHHhhhHhhcccCCCCCCCChh--HHHHHHHhhcCCcC
Q 010986 453 PLLGPVLNLARMSEFIYEDGVDRYTNSYK--MKDQVALVLKDPVT 495 (496)
Q Consensus 453 ~~~~~~~n~aR~~~~~Y~~~~D~~t~~~~--~k~~i~~l~~~pi~ 495 (496)
+|+++++|+||++++||+++ ||||.|+. ||++|++||++||.
T Consensus 742 ~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 742 IYKRLVFETARIMQLFYMQG-DGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCCC-C----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCCCCCChHHHHHHHHHHhcccCC
Confidence 99999999999999999999 99999975 99999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=2e-108 Score=904.97 Aligned_cols=431 Identities=22% Similarity=0.331 Sum_probs=374.7
Q ss_pred ccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhc-c-C-------CCCCCchhhhHHHHHhhhcCcccchhhhcccc
Q 010986 6 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-L-G-------SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFK 76 (496)
Q Consensus 6 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~-~-------~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~ 76 (496)
+.|++++|++||+||||||+|||++||+++|++||+. . . ....||++|||+|||||||||+||||||++|+
T Consensus 242 P~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~DvF~~Fk 321 (727)
T 3pya_A 242 PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFE 321 (727)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGGGGGGGE
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCHHHHHhcc
Confidence 4689999999999999999999999999999999985 1 1 12469999999999999999999999999999
Q ss_pred cccccccc---ccccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhhc-------cCCchHHHHHHHccCccc
Q 010986 77 DDEGKFKA---SMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRV-------ISNNLAEQIQHALRLPLR 146 (496)
Q Consensus 77 ~~~g~F~~---~~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~-------~~~~l~~~V~~aL~~P~~ 146 (496)
++|+|++ +..+|++||||||||||+++|||+|||||+.||++||++.+... .+++|++||+|||++|||
T Consensus 322 -~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~ 400 (727)
T 3pya_A 322 -KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWY 400 (727)
T ss_dssp -ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGG
T ss_pred -CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHh
Confidence 8899984 34789999999999999999999999999999999999987531 147899999999999999
Q ss_pred cccchhHHHhhHHhhCCCCc-------------CcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHH
Q 010986 147 KALPRLEARYYLNMYSRDDL-------------HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRM 213 (496)
Q Consensus 147 ~~~~rlear~yi~~y~~~~~-------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ 213 (496)
+++||||||+||++|+++++ +|++||||||||||+||++||+||++++||||++||. +|||+|||+
T Consensus 401 ~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~-~l~faRdr~ 479 (727)
T 3pya_A 401 ASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLS-EWGVRRSEL 479 (727)
T ss_dssp GCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG-GGTCCHHHH
T ss_pred cCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCcc-cCCchhhHH
Confidence 99999999999999997654 6999999999999999999999999999999999996 699999999
Q ss_pred HHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCC---------CcCC---CChh
Q 010986 214 VEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTN---------VTDT---LPAC 281 (496)
Q Consensus 214 ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~---------~~~~---lpe~ 281 (496)
+|||||++ |++|||+||.+|+++||++++++++||+||+|| ||++.||+||+|||.+ +++. +|+|
T Consensus 480 ve~Yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~ 556 (727)
T 3pya_A 480 LECYYLAA-ATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGS 556 (727)
T ss_dssp HHHHHHHH-TTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHH
T ss_pred HHHHHHHH-hccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCc
Confidence 99999999 999999999999999999999999999999999 9999999999999974 3333 3877
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH
Q 010986 282 --MKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF 359 (496)
Q Consensus 282 --mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~ 359 (496)
||+||.+|++++||++.++.+.+|.++.+|++++|.++++++++||+ + +| |. +++.++.
T Consensus 557 ~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~E---------Ae-llv~~I~ 617 (727)
T 3pya_A 557 VQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E--------GE---------GE-LMVKMII 617 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--------CH---------HH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--------cc---------ee-eeeeeee
Confidence 99999999999999987644444449999999999999999999997 2 33 11 4444445
Q ss_pred HhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh
Q 010986 360 LDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDL 439 (496)
Q Consensus 360 ~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~l 439 (496)
+..|..+++ ++.. +.+..|.++++.|+||+||+.+|++|+ .+++.+.|+..|++|
T Consensus 618 l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL 672 (727)
T 3pya_A 618 LMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKM 672 (727)
T ss_dssp HHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH-----------------------HHHHHHHHHHHHHHH
T ss_pred cCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHH
Confidence 555888887 5443 455569999999999999999999977 558899999999999
Q ss_pred hHHHhhccC--CCChhHHHHHHHHHhhhHhhcccCCCCCCCChhHHHHHHHhhcCCcC
Q 010986 440 NYEELLNLI--AMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVT 495 (496)
Q Consensus 440 n~~~~l~~~--~~p~~~~~~~~n~aR~~~~~Y~~~~D~~t~~~~~k~~i~~l~~~pi~ 495 (496)
+ +.|++++ .+|++| |+.+|++.||.. ||++|+ |+.+|.+++++||.
T Consensus 673 ~-~lVl~~~~~~ip~~~-----tf~~V~ksFYy~---ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 673 V-ELALSESDTFRDVSI-----TFLDVAKAFYYF---ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp H-HHHHSCCTTTHHHHH-----HHHHHHHHHHHH---HHHTTS-CHHHHHHHHHSCCC
T ss_pred H-HHHhccCCCCCCCcc-----cHHHHHHHHHhh---hcCCHH-HHHHHHHHHcCccc
Confidence 9 9999854 699999 999999999984 899999 99999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=2.2e-51 Score=420.28 Aligned_cols=251 Identities=18% Similarity=0.142 Sum_probs=225.8
Q ss_pred HHhhHHHHHHH-HHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhhcccC--CCHH
Q 010986 183 QAAHQKELSDM-TRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAY--GTFE 258 (496)
Q Consensus 183 Q~~hq~El~~l-srWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl-~~aK~~~l~~viDD~fD~~--gt~e 258 (496)
+..|.+|+++. ++||+++|+.+ .+|+|+|++++|||.+ +++++|+++.+|+ ++||+++|+|++||+||.+ ||++
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~-~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~e 92 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADL-ASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPE 92 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHH-HHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHH
Confidence 34567888776 56999999975 5999999999999999 9999999999999 9999999999999999998 6999
Q ss_pred HHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCC-C
Q 010986 259 ELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVP-S 337 (496)
Q Consensus 259 El~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vP-t 337 (496)
|++.|++++.+|+.+ .+|+++++++.++.+++++++... ++...++++++|+++++++++||+|+.+|++| |
T Consensus 93 e~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s 165 (337)
T 1ps1_A 93 DTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGM----TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDS 165 (337)
T ss_dssp HHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999864 489999999999999999997543 23456899999999999999999999999999 9
Q ss_pred HHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcC
Q 010986 338 VEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH 417 (496)
Q Consensus 338 ~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~ 417 (496)
++||+++|++|+|++++++++++++|..+|+++++. +..+++.++++.++||+|||+||+||+++|+++|+|.|||+++
T Consensus 166 ~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~ 244 (337)
T 1ps1_A 166 AAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREH 244 (337)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHc
Confidence 999999999999999999999999999999988765 4556899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhHHHh
Q 010986 418 VVSEEEAEKALWLEIANGWKDLNYEEL 444 (496)
Q Consensus 418 g~S~eeA~~~i~~~i~~~wk~ln~~~~ 444 (496)
|+|+|+|++++.++++++||++| +..
T Consensus 245 g~s~eeA~~~v~~~i~~~~~~~~-~~~ 270 (337)
T 1ps1_A 245 GWSKSRSVSHMQNEVRARLEQYL-LLE 270 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999 876
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=1.3e-49 Score=400.40 Aligned_cols=242 Identities=13% Similarity=0.138 Sum_probs=221.9
Q ss_pred hhHHHHHHHHH-HHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhhcccCCCHHHHHH
Q 010986 185 AHQKELSDMTR-WWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAYGTFEELTL 262 (496)
Q Consensus 185 ~hq~El~~lsr-Ww~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl-~~aK~~~l~~viDD~fD~~gt~eEl~~ 262 (496)
-|.+|+++..+ ||+++|+. +.|++|+|++++|||.+ +++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~-~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~ 89 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEV-TCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEA 89 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHH-HHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchh-hhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHH
Confidence 36688887755 77999997 46999999999999998 8888899999999 999999999999999999 78999999
Q ss_pred HHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhh
Q 010986 263 FTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYK 342 (496)
Q Consensus 263 ~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl 342 (496)
|++++.+|+.+ +.+|++|++++.++++++++++.... .+.++.|+.++++++ ||+|+.+|++||++||+
T Consensus 90 ~~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl 158 (300)
T 1di1_A 90 YNNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYL 158 (300)
T ss_dssp HHHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHH
T ss_pred HHHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHH
Confidence 99999999875 46899999999999999999986652 256777999999997 89999999999999999
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCC--------CcchHHHHH
Q 010986 343 SVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGH--------IPSAVECYM 414 (496)
Q Consensus 343 ~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~--------~~n~V~cyM 414 (496)
++|++|+|++++++++++++|..+|+++++ ..|+++++++.++||+|||+||+||+++|+ ++|+|.|||
T Consensus 159 ~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m 235 (300)
T 1di1_A 159 EYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLA 235 (300)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHH
T ss_pred HHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHH
Confidence 999999999999999999999999999998 469999999999999999999999999999 789999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhhHHHh
Q 010986 415 KQHVVSEEEAEKALWLEIANGWKDLNYEEL 444 (496)
Q Consensus 415 ~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~ 444 (496)
+++|+|+|+|+++++++++++||++| +..
T Consensus 236 ~~~g~s~eeA~~~~~~~i~~~~~~~~-~~~ 264 (300)
T 1di1_A 236 EESKLGIPATKRVLWSMTREWETVHD-EIV 264 (300)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999 765
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=3.2e-48 Score=394.12 Aligned_cols=244 Identities=15% Similarity=0.159 Sum_probs=219.6
Q ss_pred HHhhHHHHHHHHH-HHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhhcccCCCHHHH
Q 010986 183 QAAHQKELSDMTR-WWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAYGTFEEL 260 (496)
Q Consensus 183 Q~~hq~El~~lsr-Ww~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl-~~aK~~~l~~viDD~fD~~gt~eEl 260 (496)
...|.+|+++... ||+++|+... ||+|+|++++|||.+ +++++|+++.+|+ ++||+++|+|++||+||. |+++|+
T Consensus 25 ~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~-~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~ 101 (320)
T 3bny_A 25 CHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRV-TCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEG 101 (320)
T ss_dssp CCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHH-HHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHH
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhh-HhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhH
Confidence 3456688887755 7799999755 999999999999998 8888899999999 899999999999999999 789999
Q ss_pred HHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Q 010986 261 TLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEE 340 (496)
Q Consensus 261 ~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eE 340 (496)
+.|++++.+|+.+ +.+|++|++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++||++|
T Consensus 102 ~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~ee 170 (320)
T 3bny_A 102 SAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGG 170 (320)
T ss_dssp HHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHH
T ss_pred HHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHH
Confidence 9999999999864 4689999999999999999998654 2 24566677777 5999999999999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCC--------CcchHHH
Q 010986 341 YKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGH--------IPSAVEC 412 (496)
Q Consensus 341 Yl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~--------~~n~V~c 412 (496)
|+++|++|+|++++++++++++|..+|+++++ ..|+++++++.++||+|||+||+||+++|+ ++|+|.|
T Consensus 171 Yl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~ 247 (320)
T 3bny_A 171 YLEYRERDVGKELLAALMRFSMGLKLSPSELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQI 247 (320)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHH
Confidence 99999999999999999999999999999998 469999999999999999999999999998 7899999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHh
Q 010986 413 YMKQHVVSEEEAEKALWLEIANGWKDLNYEEL 444 (496)
Q Consensus 413 yM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~ 444 (496)
||+++|+|+|+|++++++++++.|++++ +..
T Consensus 248 ~m~~~g~s~eeA~~~~~~~i~~~~~~~~-~l~ 278 (320)
T 3bny_A 248 LAQEADVTAEAAKRVLFVMCREWELRHQ-LLV 278 (320)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999 755
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=1.8e-46 Score=390.92 Aligned_cols=273 Identities=13% Similarity=0.042 Sum_probs=235.1
Q ss_pred HHccCccccccchhHHHhhHHhhCCCCcCcHHHHHHHHhchHHHHHhhHHHHH-HHHHHHHHcCCCCCChhhHHHHHHHH
Q 010986 139 HALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELS-DMTRWWKDLDIPTKLPYARDRMVEVY 217 (496)
Q Consensus 139 ~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~-~lsrWw~~~~l~~~l~faRdr~ve~y 217 (496)
.++..|-.-.+|-+.. . +. ...||.+ ++++ ++.+||+++|+.. -+++|+|+++++
T Consensus 34 ~~~~~p~~~~lP~~~~----p-fp--~~~nP~~----------------~~v~~~~~~W~~~~gl~~-~~~~r~r~~~~~ 89 (382)
T 3kb9_A 34 TAIAVPPSLRLPVIEA----A-FP--RQLHPYW----------------PKLQETTRTWLLEKRLMP-ADKVEEYADGLC 89 (382)
T ss_dssp ---CCCTTTCCHHHHH----H-SC--CCCCTTH----------------HHHHHHHHHHHHHTTSSC-HHHHHHHHHHHC
T ss_pred ceeecCCceeCCCCCC----C-CC--CCCCcCH----------------HHHHHHHHHHHHHcCCCC-CHHHHHHHHhCC
Confidence 4455666666776632 2 22 2356665 3333 3467999999964 389999999999
Q ss_pred HHHhhccccCCCccchhH-HHHHHHHHHHhhhhhccc--CC-CHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHH
Q 010986 218 FWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDA--YG-TFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVY 293 (496)
Q Consensus 218 f~~~~a~~~eP~~s~~Rl-~~aK~~~l~~viDD~fD~--~g-t~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~ 293 (496)
||.+ +++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.+++++.++-.. ...+|+++++++.++.+++
T Consensus 90 ~~~l-aa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~l~~-~~~~p~~~~p~~~al~dl~ 167 (382)
T 3kb9_A 90 YTDL-MAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDS-PGDHLHHEDTLVAGFADSV 167 (382)
T ss_dssp HHHH-HHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHS-CGGGTTCSSHHHHHHHHHH
T ss_pred HHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHHhcC-CCCCCCCCChHHHHHHHHH
Confidence 9999 9999999999999 999999999999999996 56 999999999999885211 2336889999999999999
Q ss_pred HHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHh
Q 010986 294 NEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEW 373 (496)
Q Consensus 294 ~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~ 373 (496)
++++..+.+ ...++++++|++++++|++||+|+.+|++||++|||++|++|+|++++++++++++|..+|++++++
T Consensus 168 ~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~ 243 (382)
T 3kb9_A 168 RRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKH 243 (382)
T ss_dssp HHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS
T ss_pred HHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC
Confidence 999754322 2467999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhchhHHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHH
Q 010986 374 VLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEE 443 (496)
Q Consensus 374 ~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~ 443 (496)
+..++|++++++++||+|||+||+||+++|+++|+|.|||+++|+|+|+|+++++++|+++||++| +.
T Consensus 244 -p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~-~~ 311 (382)
T 3kb9_A 244 -PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFL-AV 311 (382)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH-HH
Confidence 667889999999999999999999999999999999999999999999999999999999999999 63
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=3.2e-33 Score=294.35 Aligned_cols=247 Identities=15% Similarity=0.122 Sum_probs=187.0
Q ss_pred HHHHHH-HHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCc-cchhH-HHHHHHHHHHhhhhh-cccCC-CHHH-HH
Q 010986 188 KELSDM-TRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKY-TFGRI-LVSKIICLISLIDDT-FDAYG-TFEE-LT 261 (496)
Q Consensus 188 ~El~~l-srWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~-s~~Rl-~~aK~~~l~~viDD~-fD~~g-t~eE-l~ 261 (496)
+|++.- ..|..++++... +-.|+++..+-|-.+ +++..|.. +..|+ +.+|+++|+|++||. +|..| +.+. ..
T Consensus 129 ~ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~ll-aa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~ 206 (433)
T 3v1v_A 129 EEVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRY-MVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGG 206 (433)
T ss_dssp HHHHHHHHHHHHHTSCCCC-----CCSCHHHHHHH-HHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHH
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHH-HHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHH
Confidence 666544 569999876422 455777877744444 33445999 79999 899999999999999 59755 3332 12
Q ss_pred HHHH---HhhhcCCCCcCCCCh-----hHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCC
Q 010986 262 LFTE---AVKRWDTNVTDTLPA-----CMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEG 333 (496)
Q Consensus 262 ~~t~---ai~rWd~~~~~~lpe-----~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g 333 (496)
.+.. ++..... ..+.-|. .-.++..+++++++++.....+ ...++++++|++|+++|++||+|+.+|
T Consensus 207 ~l~~a~~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g 281 (433)
T 3v1v_A 207 RLLLAHTAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTG 281 (433)
T ss_dssp HHHHHHTTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2222 1221111 0110010 0124678999999999755322 346789999999999999999999999
Q ss_pred CCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcC-CCcchHHH
Q 010986 334 YVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRG-HIPSAVEC 412 (496)
Q Consensus 334 ~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG-~~~n~V~c 412 (496)
++||++|||++|++| |+.+++.++.+++|..+|++++++ +..++|.+++++++||+|||+||+||+++| +++|+|.|
T Consensus 282 ~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~ 359 (433)
T 3v1v_A 282 HVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVV 359 (433)
T ss_dssp CCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHH
T ss_pred CCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHH
Confidence 999999999999999 777777778899999999998877 556679999999999999999999999995 78999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHh
Q 010986 413 YMKQHVVSEEEAEKALWLEIANGWKDLNYEEL 444 (496)
Q Consensus 413 yM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~ 444 (496)
||+++|+|+|+|+++++++++++++++. +..
T Consensus 360 ~mke~g~S~eeA~~~v~~~i~~~~~~F~-~~~ 390 (433)
T 3v1v_A 360 IAEREQLCERDAYLKAVEVHNELQHSFE-AAA 390 (433)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999988 543
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.76 E-value=2.5e-18 Score=177.55 Aligned_cols=248 Identities=13% Similarity=0.056 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHcC------------CCCCChhhHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhhcccC
Q 010986 188 KELSDMTRWWKDLD------------IPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAY 254 (496)
Q Consensus 188 ~El~~lsrWw~~~~------------l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl-~~aK~~~l~~viDD~fD~~ 254 (496)
+|-.+..+|..+.| +. .-+-..++++.+=.|.+ +.. .|..+...+ .++++++|+|++||++|..
T Consensus 30 e~r~~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~la-ar~-YP~a~~e~l~liad~~~~~F~lDD~~d~~ 106 (374)
T 1yyq_A 30 EERIENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMV-VYS-WAKVSKECMADLSIHYTYTLVLDDSKDDP 106 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHH-HHH-STTSCHHHHHHHHHHHHHHHHHTTCCSCS
T ss_pred HHHHHHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHH-hhc-CCCCCHHHHHHHHHHHHHHHhhcccccCc
Confidence 44445557888888 53 12566677777766655 555 499999988 8899999999999999975
Q ss_pred CCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCC
Q 010986 255 GTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 334 (496)
Q Consensus 255 gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~ 334 (496)
+ +++..|.+.+-+ .... + .++..++.+.+.++... .++.+..++.++|.+++.+++.|+.. .+.
T Consensus 107 ~--~~l~~~~~~ll~--G~~~---~---~Pl~~al~dl~~rl~~~----~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~ 170 (374)
T 1yyq_A 107 Y--PTMVNYFDDLQA--GREQ---A---HPWWALVNEHFPNVLRH----FGPFCSLNLIRSTLDFFEGCWIEQYN--FGG 170 (374)
T ss_dssp H--HHHTTHHHHHHH--TCCC---S---SHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHTTC--CCC
T ss_pred H--HHHHHHHHHHhc--CCCC---C---ChHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHhc--cCC
Confidence 4 677777777654 2211 1 14667777777776432 34466778999999999999999873 677
Q ss_pred CCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHH-h--hhchhHHHHHHHHHHHHhcCccchhhhhhc-CCCcchH
Q 010986 335 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFE-W--VLKVPKIITASENICRLLDDVASHKFEQKR-GHIPSAV 410 (496)
Q Consensus 335 vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e-~--~~~~p~l~~~~~~i~RL~NDI~S~~kE~~r-G~~~n~V 410 (496)
+|+.++|...++.++|+.-.... + .+|+..+. . .+.+...+.....++.|+|||.||.||... |+.+|.|
T Consensus 171 ~p~~~~Y~~~rR~~sG~~E~~~~--~----~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV 244 (374)
T 1yyq_A 171 FPGSHDYPQFLRRMNGLGHCVGA--S----LWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLV 244 (374)
T ss_dssp CTTCTTHHHHHHHHHHCHHHHHH--T----TCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHH
T ss_pred CCCHHHHHHHHHhhccHHHHHHH--h----hccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchh
Confidence 89999999988888887543322 1 23333220 0 122334666666789999999999999984 9999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHhh
Q 010986 411 ECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARM 464 (496)
Q Consensus 411 ~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR~ 464 (496)
.+++.++|+|.++|++++..++..+..++. . .+. ...|. +++.+=+..|.
T Consensus 245 ~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~-~-~L~-~~~~~-~l~al~~~irG 294 (374)
T 1yyq_A 245 KNYVVSDEISLHEALEKLTQDTLHSSKQMV-A-VFS-DKDPQ-VMDTIECFMHG 294 (374)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-H-HHS-SSCHH-HHHHHHHHHHH
T ss_pred hhehhcCCCCHHHHHHHHHHHHHHHHHHHH-H-Hhc-cCCHH-HHHHHHHHHhH
Confidence 999999999999999999999998888876 5 332 23332 44444445543
No 17
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=92.12 E-value=9.3 Score=37.20 Aligned_cols=207 Identities=15% Similarity=0.093 Sum_probs=109.0
Q ss_pred HHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhh-cCCCCc--CCCChhHHHHHHHHHHH
Q 010986 216 VYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKR-WDTNVT--DTLPACMKFIYNKLLGV 292 (496)
Q Consensus 216 ~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~gt~eEl~~~t~ai~r-Wd~~~~--~~lpe~mk~~~~al~~~ 292 (496)
+|++++ - .. |. ..|-.+.-+-.|.-.+||+=|....+.+++.+-+.+++ .+.... ...|+ .++..++..+
T Consensus 27 sF~~a~-~-~L-p~--~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~ 99 (293)
T 3acx_A 27 SFSYAF-D-LL-PE--DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHV 99 (293)
T ss_dssp HHHHHH-T-TS-CH--HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHH
T ss_pred cHHHHH-H-hC-CH--HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHH
Confidence 455554 3 33 43 45665566777888899999976654447766666654 122110 00022 3566776655
Q ss_pred HHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHH
Q 010986 293 YNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFE 372 (496)
Q Consensus 293 ~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e 372 (496)
+.+.. - -++.+.+++.++- .+......+|++|+......+.|+--.+++-.+|..+ .++..+
T Consensus 100 ~~~~~---------l----~~~~~~~li~g~~---~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~ 161 (293)
T 3acx_A 100 AQHKN---------I----AFQSFYNLIDTVY---KDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYD 161 (293)
T ss_dssp HHHSC---------C----CHHHHHHHHHHHH---HHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHH
T ss_pred HHHhC---------C----CHHHHHHHHHHHH---HHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHH
Confidence 44321 0 1355566777775 3444556789999888888877766555555554322 123222
Q ss_pred hhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCcchHHHHHhcCCCCHHH---------HHHHHHHHHHHHHHHhhHHH
Q 010986 373 WVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEE---------AEKALWLEIANGWKDLNYEE 443 (496)
Q Consensus 373 ~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~ee---------A~~~i~~~i~~~wk~ln~~~ 443 (496)
. ....+...-+.|=+........+|-+- .=.-.|.++|+|.++ ..+-+..++..+..-+. +.
T Consensus 162 ~-------A~~lG~AlQltNilRDv~eD~~~gR~Y-LP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~-~a 232 (293)
T 3acx_A 162 V-------ARRLGESLQLINILRDVGEDFENERIY-FSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFR-DV 232 (293)
T ss_dssp H-------HHHHHHHHHHHHHHHCHHHHHHTTCCC-SCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHhCCcEE-eCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHH-HH
Confidence 2 222222223333233333445566541 112356788999876 23445566666665554 32
Q ss_pred hhccCCCChhHHH
Q 010986 444 LLNLIAMPLPLLG 456 (496)
Q Consensus 444 ~l~~~~~p~~~~~ 456 (496)
.--...+|..+.-
T Consensus 233 ~~~~~~lp~~~r~ 245 (293)
T 3acx_A 233 MDQIKVFSIEAQP 245 (293)
T ss_dssp HHTGGGSCTTHHH
T ss_pred HHhHHhCCHHHHH
Confidence 2112346665443
No 18
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=90.04 E-value=15 Score=35.82 Aligned_cols=186 Identities=12% Similarity=0.111 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHhhhhhcccCCC--HHHHHHHHHHhhh-cCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 010986 233 GRILVSKIICLISLIDDTFDAYGT--FEELTLFTEAVKR-WDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGI 309 (496)
Q Consensus 233 ~Rl~~aK~~~l~~viDD~fD~~gt--~eEl~~~t~ai~r-Wd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~ 309 (496)
.|-.+.-+-.|.=.+||+-|.... ...|+.+-+.+++ .... |. .+++.+|..++.+.. -.
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~-----~~--~pv~~al~~~~~~~~---------l~- 102 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAGE-----AT--TPAFRALQFTIATCN---------LP- 102 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTC-----CC--SHHHHHHHHHHHHHT---------CC-
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CC--CHHHHHHHHHHHHcC---------CC-
Confidence 344444566677788999996442 3345555555544 1121 11 156777766655432 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHH
Q 010986 310 PYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICR 389 (496)
Q Consensus 310 ~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~R 389 (496)
++.+.+++.++.... .....+|++|+......+.|+--.+++-.++.. +++.... ....+...-
T Consensus 103 ---~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~---~~~~~~~-------A~~lG~AlQ 166 (294)
T 4hd1_A 103 ---MEPFLRLIEANRRDQ---RKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCL---DDERARL-------SDATCTALQ 166 (294)
T ss_dssp ---SHHHHHHHHHHHHHH---HCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCC---SHHHHHH-------HHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhcc---ccCCCCCHHHHHHHHHhccchHHHHHHHHhCCC---CHHHHHH-------HHHHHHHHH
Confidence 244556677776443 344578988888877777766544444444332 2333222 122233333
Q ss_pred HhcCccchhhhhhcCCC--cchHHHHHhcCCCCHHHH---------HHHHHHHHHHHHHHhhHHHhhccCCCChhHH
Q 010986 390 LLDDVASHKFEQKRGHI--PSAVECYMKQHVVSEEEA---------EKALWLEIANGWKDLNYEELLNLIAMPLPLL 455 (496)
Q Consensus 390 L~NDI~S~~kE~~rG~~--~n~V~cyM~e~g~S~eeA---------~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~ 455 (496)
|.|=+.......++|-+ + .-.|.++|+|.++- ..-+..+++.+..-+. +..--...+|..+.
T Consensus 167 ltNilRDv~eD~~~gR~YlP---~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~-~a~~~~~~lp~~~r 239 (294)
T 4hd1_A 167 VANHMQDIDRDLALGRIYVP---RADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFD-EGRRLESLVPPRLA 239 (294)
T ss_dssp HHHHHHTHHHHHHTTCBCSC---HHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHH-HHGGGGGSSCHHHH
T ss_pred HHHHHHhchhhhccCceeCC---HHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHH
Confidence 33433333344556654 3 34678899998762 2234444444443333 22211245786544
No 19
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=87.00 E-value=3.8 Score=40.34 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=76.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITAS 384 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~ 384 (496)
.++..+.++....+.|-..+..|... .||.++|+..-..-+|.....+ ...| ++ ..+++..+.+ ..+-+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~la-g~~~~~~~~l---~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTG-GAEEELAERF---SHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 34556677778888998888888654 3899999987666555543222 1221 12 2355544332 5566777
Q ss_pred HHHHHHhcCccchhhhh-----hcCCCcchHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHhhHHHhhccCCCCh-hHHH
Q 010986 385 ENICRLLDDVASHKFEQ-----KRGHIPSAVECYMKQHVV--SEEEAEKALWLEIANGWKDLNYEELLNLIAMPL-PLLG 456 (496)
Q Consensus 385 ~~i~RL~NDI~S~~kE~-----~rG~~~n~V~cyM~e~g~--S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~-~~~~ 456 (496)
+...-+.||+..+.... ..|.. +...+|..+.+- ..+.|.+.+++.++++.+.+. .+|. +.++
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~--------~lp~~~~~~ 270 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE--------TFRECPARD 270 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------C-CHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT--------TSCCSHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH--------hCCCchHHH
Confidence 77888999988875432 23333 666677655421 134444444455554444433 3664 4556
Q ss_pred HHHHHHhh
Q 010986 457 PVLNLARM 464 (496)
Q Consensus 457 ~~~n~aR~ 464 (496)
...++++.
T Consensus 271 ~L~~l~~~ 278 (295)
T 3ipi_A 271 KLFQITDY 278 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666643
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=85.44 E-value=7.3 Score=39.41 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=66.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHhhhchhHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITAS 384 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~l~~~~ 384 (496)
..+..+.+++..++.+-..+..|.... ||.++|++.-..-+|......+-. +..| .+++..+.+ -.+-+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 456678888999999999999997655 999999987666555543322211 1122 455544332 4566777
Q ss_pred HHHHHHhcCccchhhh-----------hhcCCCcchHHHHHhcC
Q 010986 385 ENICRLLDDVASHKFE-----------QKRGHIPSAVECYMKQH 417 (496)
Q Consensus 385 ~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyM~e~ 417 (496)
+...-+.||+..+.-. ..+|.. +...+|.-++
T Consensus 233 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 7777889998877532 233444 6666665444
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=79.33 E-value=38 Score=33.86 Aligned_cols=87 Identities=10% Similarity=-0.129 Sum_probs=57.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITAS 384 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~ 384 (496)
.++..+.++...++.|-..+..|.. +..||.++|+..-..-+|.....+ ...| ++ ..+++..+.+ -.+-+..
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSA-GVDVAKSEAL---RDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 4566778888899999999988853 445899999997766666543322 2222 11 2455544332 5566777
Q ss_pred HHHHHHhcCccchhh
Q 010986 385 ENICRLLDDVASHKF 399 (496)
Q Consensus 385 ~~i~RL~NDI~S~~k 399 (496)
+...-+.||+..+.-
T Consensus 225 G~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 225 GLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhccC
Confidence 888889999988754
No 22
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=78.53 E-value=53 Score=32.67 Aligned_cols=104 Identities=9% Similarity=-0.045 Sum_probs=64.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITAS 384 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~ 384 (496)
..+..+.++....+.|-..+..|.. +..||.++|+..-..-+|.....++ ..| ++ ..+++..+. .-.+-...
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~la-g~~~~~~~~---l~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAAT-EVGGIIG-GAPEDQVQA---LFDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHH
Confidence 4566778888899999999999864 4568999999876665555432221 221 11 234554333 24566777
Q ss_pred HHHHHHhcCccchhhh-----------hhcCCCcchHHHHHhcC
Q 010986 385 ENICRLLDDVASHKFE-----------QKRGHIPSAVECYMKQH 417 (496)
Q Consensus 385 ~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyM~e~ 417 (496)
+...-+.||+..+.-. ..+|.. +...+|.-+.
T Consensus 213 G~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 255 (341)
T 3mzv_A 213 GIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKL-TMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHHHC----------CCHHHHTTCC-CHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCChhhcCCCCCcccccCch-hHHHHHHHHh
Confidence 7777888998876432 234444 6655665443
No 23
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=77.85 E-value=28 Score=34.55 Aligned_cols=111 Identities=8% Similarity=0.004 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCc
Q 010986 317 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDV 394 (496)
Q Consensus 317 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 394 (496)
...+.|-..+..|... .||.++|+..-..-+|...... ...| ++...+++..+.+ ..+-+..+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777787543 7899999997555444433222 2222 2222455544332 45666777777889998
Q ss_pred cchhhh-----------hhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 395 ASHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 395 ~S~~kE-----------~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
..+.-+ ..+|.. +.+.+| ..|.|.+..++.++++...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 877532 122333 555555 478899999998888886665
No 24
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=76.09 E-value=16 Score=35.81 Aligned_cols=110 Identities=9% Similarity=-0.012 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCc
Q 010986 317 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 394 (496)
Q Consensus 317 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 394 (496)
...+.+-..+..|... .||.++|+..-..-+|......... +..| .+++..+.+ -++-...+...-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577777778887543 7899999998766555543222111 1123 455554333 55667777888899999
Q ss_pred cchhhhh-----------hcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 395 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 395 ~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
..+.-.. .+|.. +...++- .+.|.+.+.+.++++.+.+.
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~ 270 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELT 270 (301)
T ss_dssp HHHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 8875432 22332 5554443 57888888888888887665
No 25
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=75.39 E-value=63 Score=32.03 Aligned_cols=87 Identities=15% Similarity=-0.028 Sum_probs=57.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHhhhchhHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITAS 384 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~l~~~~ 384 (496)
.++..+.++...++.|-..+..|.. +..||.++|+..-..-+|.....++-. +..| .+++..+. .-.+-...
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAF---ARLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4566788888999999999998854 345899999998776666543322211 1122 35554333 25567777
Q ss_pred HHHHHHhcCccchhh
Q 010986 385 ENICRLLDDVASHKF 399 (496)
Q Consensus 385 ~~i~RL~NDI~S~~k 399 (496)
+...-+.||+..+..
T Consensus 207 G~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 207 GICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhccCCC
Confidence 778889999888763
No 26
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=71.85 E-value=38 Score=33.24 Aligned_cols=123 Identities=11% Similarity=0.016 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccc
Q 010986 319 VILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVAS 396 (496)
Q Consensus 319 ~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S 396 (496)
.+.|-..+..|... .||.++|...-..-+|...... ...| ++...+++..+.+ ..+-...+...-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEAS-VILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 67777777777543 4899999988544444332221 1221 2222155544332 5566777777789999988
Q ss_pred hhhhh-----------hcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHh
Q 010986 397 HKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLAR 463 (496)
Q Consensus 397 ~~kE~-----------~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR 463 (496)
+.-+. .+|.. +.+.+| ..|.|.+.+++.++++.+.+. .+|. -.+....++.
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~--------~l~~-~~~~L~~l~~ 289 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKP-TYPALL------GLAAAKEYALELRDQALHALR--------PFDA-AAEPLRELAR 289 (304)
T ss_dssp HHHHHHHC------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHTT--------TSCG-GGHHHHHHHH
T ss_pred ccCChHHhCCCcccHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH--------hCch-hHHHHHHHHH
Confidence 75432 22222 555554 478899999999988887666 3554 2445555554
No 27
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=71.50 E-value=22 Score=34.82 Aligned_cols=109 Identities=12% Similarity=0.019 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHH--HHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCc
Q 010986 317 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA--SFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 394 (496)
Q Consensus 317 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~--~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 394 (496)
...+.+-..+..|...+..||.++|+..-..-+|....... .-+..| .+++. ...+-...+...-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~~------l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRGP------LTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCHH------HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHHH------HHHHHHHHHHHHHHHHHH
Confidence 45778888888897667789999999875554444322211 111122 23231 144666777777899999
Q ss_pred cchhhhh-----------hcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 395 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 395 ~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
..+.-+. .+|.. +.+.++ ..|.|.+..++.++++.+.+.
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKA-TFVSLL------GLAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp C---------------------C-CHHHHH------CSSHHHHHHHHHHHHHHHHTG
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8875432 22222 454444 357788889999998887766
No 28
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=71.05 E-value=21 Score=35.07 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhc--CCCCCHHHHHhhhchhHHHHHHHHHHHHhcCc
Q 010986 317 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM--GDIATKEVFEWVLKVPKIITASENICRLLDDV 394 (496)
Q Consensus 317 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~--g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 394 (496)
..++.|-..+..|. +..||.++|+..-..-+|...... ...|. +...+++..+ ...++-...+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~~---~l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAMLP---HLDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 35678888888885 457899999987654444432222 22221 1112222222 2245666777777888998
Q ss_pred cchhhhh-----------hcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 395 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 395 ~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
..+.-+. .+|.. +...+| ..+.|.+.+++.++++.+.+.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 281 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALE 281 (302)
T ss_dssp HHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8775432 22332 555554 368888888888888887666
No 29
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=70.80 E-value=40 Score=33.21 Aligned_cols=113 Identities=7% Similarity=0.027 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCC-CCHHHHHhhhchhHHHHHHHHHHHHhcCcc
Q 010986 317 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDI-ATKEVFEWVLKVPKIITASENICRLLDDVA 395 (496)
Q Consensus 317 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 395 (496)
...+.|-..+..|... ..||.++|...-..-+|.....+.....++.. .+++..+.+ ..+-...+...-+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567787878887543 37899999987654444332222222223332 556654433 556677777778899988
Q ss_pred chhhhh-----------hcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 396 SHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 396 S~~kE~-----------~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
.+.-+. .+|.. +.+.+| ..+.|.+.+++.++++.+.+.
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 775432 22322 444443 478999999999998887666
No 30
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=70.69 E-value=32 Score=34.26 Aligned_cols=110 Identities=14% Similarity=0.026 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCc
Q 010986 317 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 394 (496)
Q Consensus 317 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 394 (496)
..++.|-..+..|... .+|.++|+..-..-+|......... +..| .+++..+.+ -++-...+...-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577888888888654 6899999998776565543222111 1123 455544333 55667777888899999
Q ss_pred cchhhhh-----------hcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 395 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 395 ~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
..+.-.. .+|.. +...+| ..|.|.+.+.+.++++.+.+.
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~ 314 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLA 314 (335)
T ss_dssp HHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTG
T ss_pred HHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8875321 22332 555444 268889999999998887776
No 31
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=68.66 E-value=44 Score=32.41 Aligned_cols=119 Identities=12% Similarity=0.000 Sum_probs=76.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHH--HHhcCCCCCHHHHHhhhchhHHHHHHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTAS--FLDMGDIATKEVFEWVLKVPKIITASE 385 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~e~~e~~~~~p~l~~~~~ 385 (496)
.+..+.++....+.|-..+..|......||.++|+..-..-+|........ -+..| .+++ ..-++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT------XMXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh------HHHHHHHHHH
Confidence 455677777889999999999976544789999999766655544222111 11123 2222 1245667777
Q ss_pred HHHHHhcCccchhhhh-hcCC-----C--cchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 386 NICRLLDDVASHKFEQ-KRGH-----I--PSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 386 ~i~RL~NDI~S~~kE~-~rG~-----~--~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
...-+.||+..+.-.. .-|+ . .+...+| ..|.|.+.+++.++++.+.+.
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 263 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIE 263 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7888999998886532 2333 1 2333333 367889999999998887776
No 32
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=68.50 E-value=41 Score=33.39 Aligned_cols=86 Identities=13% Similarity=0.047 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHhhhchhHHHHHHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITASE 385 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~l~~~~~ 385 (496)
++..+.++...++.|-..+..|.... ..|.++|++.-..-+|......+.. +..| .+++..+.+ -.+-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKAL---SSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 45567778889999999999996543 4599999998766555543322211 1122 355544333 55677778
Q ss_pred HHHHHhcCccchhh
Q 010986 386 NICRLLDDVASHKF 399 (496)
Q Consensus 386 ~i~RL~NDI~S~~k 399 (496)
...-+.||+..+.-
T Consensus 212 ~aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 212 IAFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC
Confidence 88889999988753
No 33
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=68.35 E-value=39 Score=33.40 Aligned_cols=110 Identities=8% Similarity=-0.005 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCcc
Q 010986 318 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVA 395 (496)
Q Consensus 318 ~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 395 (496)
.++.|-..+..|. +..||.++|+..-..-+|.....+ ...| ++...+++..+.+ ..+-+..+...-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4667777777775 345899999987554444432221 2222 2222455544332 456677777778999988
Q ss_pred chhhh-----------hhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 396 SHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 396 S~~kE-----------~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
.+.-+ ..+|.. +.+.+| ..|.|.+.+++.++++.+.+.
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 274 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQIS 274 (317)
T ss_dssp HTC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHG
T ss_pred hccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 77432 122332 555555 368888888888888887766
No 34
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=67.48 E-value=74 Score=31.47 Aligned_cols=103 Identities=14% Similarity=0.046 Sum_probs=62.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhc--CCCCCHHHHHhhhchhHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM--GDIATKEVFEWVLKVPKIITAS 384 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~--g~~l~~e~~e~~~~~p~l~~~~ 384 (496)
..+..+.++...++.+-+.+..|.. +..||.++|++.-..-+|.....+ ...|. + ..+++..+.+ -.+-+..
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~l 216 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLA-GAPQSVIDRT---RDIGIAI 216 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 3455677888888999888888753 456899999987655555442222 22221 2 1355544332 4566667
Q ss_pred HHHHHHhcCccchhh-----------hhhcCCCcchHHHHHhc
Q 010986 385 ENICRLLDDVASHKF-----------EQKRGHIPSAVECYMKQ 416 (496)
Q Consensus 385 ~~i~RL~NDI~S~~k-----------E~~rG~~~n~V~cyM~e 416 (496)
+...-+.||+..+.- ....|.. +...+|.-+
T Consensus 217 G~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 217 GCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 777778888877643 2344554 666666554
No 35
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=65.84 E-value=37 Score=33.30 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCc
Q 010986 317 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDV 394 (496)
Q Consensus 317 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 394 (496)
..++.|-..+..|.. ..||.++|...-..-+|...... ...| ++ ..+++..+.+ ..+-+..+...-+.||+
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~-~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFA-LIAGGVLA-NQTEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 346677777777743 37899999987544444332221 1221 12 2345543332 55667777777889998
Q ss_pred cchhhh-----------hhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 395 ASHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 395 ~S~~kE-----------~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
..+.-+ ..+|.. +...++ ..+.|.+.+++.++++.+.+.
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~ 278 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLE 278 (302)
T ss_dssp HHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 877432 222332 444444 478999999999999887776
No 36
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=61.86 E-value=74 Score=31.85 Aligned_cols=87 Identities=9% Similarity=-0.004 Sum_probs=55.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhh----------CCC-CCCHHHhhhhhhhccchHHHHHHHHHhc-CCCCCHHHHHhhh
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLK----------EGY-VPSVEEYKSVALRSIAVLPVVTASFLDM-GDIATKEVFEWVL 375 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~----------~g~-vPt~eEYl~~~~~S~g~~~~~~~~~~~~-g~~l~~e~~e~~~ 375 (496)
.+..+.++...++.|-..+..|.. .+. .||.++|+..-..-+|.....++ .+|. --..+++..+.+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l- 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA-KWGVLSVSDDRGLAEAA- 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHCCCHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHHH-
Confidence 456778888899999999999962 233 67999999976665555433222 2211 002345543332
Q ss_pred chhHHHHHHHHHHHHhcCccchh
Q 010986 376 KVPKIITASENICRLLDDVASHK 398 (496)
Q Consensus 376 ~~p~l~~~~~~i~RL~NDI~S~~ 398 (496)
-.+-...+...-+.||+..+.
T Consensus 211 --~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 211 --WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhc
Confidence 456677777778889988774
No 37
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=58.17 E-value=69 Score=31.81 Aligned_cols=87 Identities=14% Similarity=-0.005 Sum_probs=54.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHH--HHhcCCCCCHHHHHhhhchhHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTAS--FLDMGDIATKEVFEWVLKVPKIITAS 384 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~e~~e~~~~~p~l~~~~ 384 (496)
.++..+.++...++.+-..+..|.. +..||.++|+..-..-+|.....++. -+..| .+++..+.+ -.+-...
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 226 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVAVLA---FEYGRNL 226 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHHHHH---HHHHHHH
Confidence 3556677788888889888877643 23579999999755545544322211 11122 345543332 4566677
Q ss_pred HHHHHHhcCccchhh
Q 010986 385 ENICRLLDDVASHKF 399 (496)
Q Consensus 385 ~~i~RL~NDI~S~~k 399 (496)
+...-+.||+..+.-
T Consensus 227 G~aFQi~DD~lD~~g 241 (348)
T 3apz_A 227 GLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccC
Confidence 777788999888754
No 38
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=57.12 E-value=1.6e+02 Score=29.32 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=56.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASE 385 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~ 385 (496)
++..+.++...++.+-..+..|... .-||.++|+..-..-+|...... ..+| ++ ..+++..+.+ -.+-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACA-SSIGAVLG-GADERTADTL---EKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 4556778888999999999999653 46899999997666555553322 2222 11 2355544332 55677777
Q ss_pred HHHHHhcCccchh
Q 010986 386 NICRLLDDVASHK 398 (496)
Q Consensus 386 ~i~RL~NDI~S~~ 398 (496)
...-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8888899988774
No 39
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=53.58 E-value=1e+02 Score=29.83 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHHHHHHHHhcC
Q 010986 316 MQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDD 393 (496)
Q Consensus 316 w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 393 (496)
....+.+...+..|.. ..||.++|...-..-+|...... ...| ++ ..+++..+. ...+-+..+...-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAA-LKMGCEIC-ELNNEESNQ---IYKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4556677777777743 46899999987555444432222 1222 11 244554333 25566777777789999
Q ss_pred ccchhhh-hhcCCCc-------chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHh
Q 010986 394 VASHKFE-QKRGHIP-------SAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLAR 463 (496)
Q Consensus 394 I~S~~kE-~~rG~~~-------n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR 463 (496)
+..+.-. ...|+.. +.+.++ ..+.|.++.+++++++.+.+. .+|....+..-.+++
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~--------~~~~~~~~~l~~la~ 280 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE--------KLNEKLAQMIQNLII 280 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH--------TSCHHHHHHHHHHHH
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH--------HhchhHHHHHHHHHH
Confidence 9887643 2334332 222222 367888888888888876665 355443444445543
No 40
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=50.96 E-value=87 Score=30.92 Aligned_cols=111 Identities=12% Similarity=-0.008 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCc
Q 010986 317 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDV 394 (496)
Q Consensus 317 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 394 (496)
...+.|-..+..|... ..||.++|...-..-+|...... ...| ++ ..+++..+.+ ..+-+..+...-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a-~~~Ga~la-ga~~~~~~~l---~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKAS-IMSGAVLA-EASEGDIKKL---EGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567788888888542 36899999987544344332221 1221 12 2345543332 55666777777889998
Q ss_pred cchhhh-----------hhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 395 ASHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 395 ~S~~kE-----------~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
..+.-. ..+|.. +...+| ..+.|.+.+++.++++.+.+.
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~ 303 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILS 303 (324)
T ss_dssp HHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 877432 122322 444444 468899999999998887766
No 41
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=50.53 E-value=70 Score=31.39 Aligned_cols=109 Identities=11% Similarity=0.006 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCcc
Q 010986 318 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVA 395 (496)
Q Consensus 318 ~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 395 (496)
..+.|-..+..|. +..||.++|...-..-+|...... ...| ++ ..+++..+. ...+-...+...-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYA-VQAGLILG-QAPEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4566666677774 346899999987544444332222 1211 12 134443322 2456667777778889988
Q ss_pred chhhh-----------hhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 396 SHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 396 S~~kE-----------~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
.+.-. ..+|.. +.+.+| ..+.|.+..+++++++.+.+.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 77432 222332 444444 367888888888888887665
No 42
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=49.20 E-value=55 Score=32.17 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHH-HhhhchhHHHHHHHHHHHHhc
Q 010986 316 MQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVF-EWVLKVPKIITASENICRLLD 392 (496)
Q Consensus 316 w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~-e~~~~~p~l~~~~~~i~RL~N 392 (496)
....+.+-..+..|. +..||.++|+..-..-+|......... +..| .+++.. +.+ ..+-+..+...-+.|
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345677777777775 567899999987555444432221111 1112 333433 332 456677777778999
Q ss_pred Cccchhhh-hhcCCCcchHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHhh
Q 010986 393 DVASHKFE-QKRGHIPSAVECYMKQHVVS------EEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 393 DI~S~~kE-~~rG~~~n~V~cyM~e~g~S------~eeA~~~i~~~i~~~wk~ln 440 (496)
|+..+.-+ ..-|+.... .+...| .+.|.+..+++++++.+.+.
T Consensus 231 DiLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99887643 333443221 233333 58888888888888887666
No 43
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=47.19 E-value=38 Score=32.98 Aligned_cols=108 Identities=12% Similarity=0.011 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhCC-CCCCHHHhhhhhhhccchHHHHH--HHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCc
Q 010986 318 EVILMYFTEAKWLKEG-YVPSVEEYKSVALRSIAVLPVVT--ASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 394 (496)
Q Consensus 318 ~~~~a~l~EA~W~~~g-~vPt~eEYl~~~~~S~g~~~~~~--~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 394 (496)
.++.|-..+..|...+ ..+|.++|...-..-+|...... +.-+..| .+++..+.+ -.+-...+...-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG--GSDEEIERL---RKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566666666664321 24688999987444333332211 1112122 455544333 55667777788899999
Q ss_pred cchhhhhhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 395 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 395 ~S~~kE~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
..+..+. -.+...+| ..|.|.+.+.+.++++.+.+.
T Consensus 236 LD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 271 (293)
T 2j1p_A 236 LDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLL 271 (293)
T ss_dssp HHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8886443 23555444 467888888888888887666
No 44
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=47.13 E-value=92 Score=30.24 Aligned_cols=110 Identities=12% Similarity=0.004 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhc---CCCCCHHHHHhhhchhHHHHHHHHHHHHhcC
Q 010986 317 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM---GDIATKEVFEWVLKVPKIITASENICRLLDD 393 (496)
Q Consensus 317 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~---g~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 393 (496)
..++.|-..+..|... .+|.++|+..-..-+|..... ....|. + ..+++..+. .-++-...+...-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~-~~~~ga~l~a-g~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRA-AVRLGALSAG-DKGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHH-HHHHHHHTTT-HHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHH-HHHHHHHHhC-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567788888888543 789999999865555544222 222221 1 123443322 24566777777789999
Q ss_pred ccchhhhh-----------hcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 010986 394 VASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 440 (496)
Q Consensus 394 I~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 440 (496)
+..+.-.. .+|.. +...+|- .+.|.+.+++.++++.+.+.
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~~------l~~a~~~~~~~~~~A~~~L~ 275 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKS-TYPALLG------LEQARKKARDLIDDARQSLK 275 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCC-CHHHHHC------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 88875432 22332 5554442 57888899999999988776
No 45
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=42.45 E-value=1e+02 Score=30.25 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=54.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHH-hhCCCCCCHHHhhhhhhhccchH-HHHH--HHHHhcCCCCCHHHHHhhhchhHHHHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKW-LKEGYVPSVEEYKSVALRSIAVL-PVVT--ASFLDMGDIATKEVFEWVLKVPKIITA 383 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W-~~~g~vPt~eEYl~~~~~S~g~~-~~~~--~~~~~~g~~l~~e~~e~~~~~p~l~~~ 383 (496)
.+..+.++...++.|-..+..| ...+..||.++|++.-..-+|.. .... +.-...|. +++.. .-.+-..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHHH
Confidence 4556778889999999999999 65435689999998766655544 2221 11222232 22321 2456667
Q ss_pred HHHHHHHhcCccchh
Q 010986 384 SENICRLLDDVASHK 398 (496)
Q Consensus 384 ~~~i~RL~NDI~S~~ 398 (496)
.+...-+.||+..+.
T Consensus 204 lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCccc
Confidence 777778888888775
No 46
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=36.62 E-value=1.7e+02 Score=29.29 Aligned_cols=88 Identities=16% Similarity=0.047 Sum_probs=58.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCC----CCCHHHhhhhhhhccchH-HH--HHHHHHhcCCCCCHHHHHhhhchhHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEGY----VPSVEEYKSVALRSIAVL-PV--VTASFLDMGDIATKEVFEWVLKVPKI 380 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g~----vPt~eEYl~~~~~S~g~~-~~--~~~~~~~~g~~l~~e~~e~~~~~p~l 380 (496)
++..+.+.....+.|-..+..|...+. .||+++|+..-..-+|.. .. +.+.-+..| ..+++..+.+ -.+
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~a~~~~~~~l---~~~ 252 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-IDGEKEHANA---KKI 252 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-CCcHHHHHHH---HHH
Confidence 455677788888999999999976544 389999999876655554 21 222222223 2455544333 567
Q ss_pred HHHHHHHHHHhcCccchhh
Q 010986 381 ITASENICRLLDDVASHKF 399 (496)
Q Consensus 381 ~~~~~~i~RL~NDI~S~~k 399 (496)
-...+...-+.||+..+.-
T Consensus 253 g~~lG~aFQI~DDiLD~~g 271 (374)
T 2qis_A 253 LLEMGEFFQIQDDYLDLFG 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 7778888889999987753
No 47
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=36.43 E-value=1.8e+02 Score=28.11 Aligned_cols=131 Identities=9% Similarity=0.018 Sum_probs=72.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH-HhcCCCCCHHHHHhhhchhHHHHHHHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF-LDMGDIATKEVFEWVLKVPKIITASEN 386 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~-~~~g~~l~~e~~e~~~~~p~l~~~~~~ 386 (496)
.+..+.++....+.|-..+..| .++|++.-..-+|......+.. ..++ .+++..+.+ -.+-...+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~l---~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQM---LDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHHH---HHHHHHHHH
Confidence 4455667777777777666554 6788887665555443222111 1123 344433322 456666777
Q ss_pred HHHHhcCccchhhhh----hcCCCcchHHHHHhcCCCCHHHH-HHHHHHHHHHHHHHhhHHHhhccCCCC--hhHHHHHH
Q 010986 387 ICRLLDDVASHKFEQ----KRGHIPSAVECYMKQHVVSEEEA-EKALWLEIANGWKDLNYEELLNLIAMP--LPLLGPVL 459 (496)
Q Consensus 387 i~RL~NDI~S~~kE~----~rG~~~n~V~cyM~e~g~S~eeA-~~~i~~~i~~~wk~ln~~~~l~~~~~p--~~~~~~~~ 459 (496)
..-+.||+..+..+. ..|. .+...+| . ..+.++| ...+.+.++++.+.+. .+| .+.++...
T Consensus 203 aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~--------~lp~~~~~~~~L~ 270 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELIS--------NIPFQSKYLSEIR 270 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHH--------TSCCCGGGHHHHH
T ss_pred HHHHHHhhhhhcCCCChhhhcCc-ccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHH--------hCCCCcHHHHHHH
Confidence 778889988775432 2222 3666666 3 3345777 4456666676665554 233 23455555
Q ss_pred HHHh
Q 010986 460 NLAR 463 (496)
Q Consensus 460 n~aR 463 (496)
++++
T Consensus 271 ~l~~ 274 (289)
T 2azj_A 271 SLPE 274 (289)
T ss_dssp THHH
T ss_pred HHHH
Confidence 5554
No 48
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=36.04 E-value=1.5e+02 Score=29.61 Aligned_cols=88 Identities=20% Similarity=0.070 Sum_probs=57.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCC----CCCHHHhhhhhhhccchH-H--HHHHHHHhcCCCCCHHHHHhhhchhHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEGY----VPSVEEYKSVALRSIAVL-P--VVTASFLDMGDIATKEVFEWVLKVPKI 380 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g~----vPt~eEYl~~~~~S~g~~-~--~~~~~~~~~g~~l~~e~~e~~~~~p~l 380 (496)
++..+.+.....+.|-..+..|...+. .+|+++|+..-..-+|.. . .+.+.-+..| ..+++..+.+ -.+
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag-~~~~~~~~~l---~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVG-IDSKEEHENA---KAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHT-CCCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcC-CccHHHHHHH---HHH
Confidence 455677788888999999999976543 579999999876655544 2 1122222223 1345544333 556
Q ss_pred HHHHHHHHHHhcCccchhh
Q 010986 381 ITASENICRLLDDVASHKF 399 (496)
Q Consensus 381 ~~~~~~i~RL~NDI~S~~k 399 (496)
-...+...-+.||+..+.-
T Consensus 246 g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7777888889999887753
No 49
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=33.70 E-value=3.5e+02 Score=26.55 Aligned_cols=245 Identities=11% Similarity=0.054 Sum_probs=117.1
Q ss_pred ChhhHHHHHH---HHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCC-CHHH----HHHHHHHhhh--cCCCCc
Q 010986 206 LPYARDRMVE---VYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYG-TFEE----LTLFTEAVKR--WDTNVT 275 (496)
Q Consensus 206 l~faRdr~ve---~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~viDD~fD~~g-t~eE----l~~~t~ai~r--Wd~~~~ 275 (496)
+.++++-+.. +|+.++ - ...| ..|-.+.-+-.|.=..||+=|... +.++ |+.|-+.+.. |....
T Consensus 13 ~~~C~~~l~~~srsF~la~-~-lLp~---~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~- 86 (343)
T 3vj8_A 13 LKTCYKYLNQTSRSFAAVI-Q-ALDG---EMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME- 86 (343)
T ss_dssp HHHHHHHHHHHHGGGHHHH-H-TCCT---THHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC-
T ss_pred HHHHHHHHHhcCCcHHHHH-H-hCCH---HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcC-
Confidence 3455553333 355554 3 3323 345555567788889999999764 4443 5555555543 32211
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHH
Q 010986 276 DTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVV 355 (496)
Q Consensus 276 ~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~ 355 (496)
.-|.. +.+...+-.+...+.. +. . .......+....++.++. .+. ...++|++|+......+.|+--.+
T Consensus 87 -~~~~~-~~ll~~~p~v~~~f~~-l~---~-~~~~~i~~~~~~m~~gm~---~dl-~~~~~t~~~L~~Yc~~vAg~VG~l 155 (343)
T 3vj8_A 87 -SKEKD-RQVLEDFPTISLEFRN-LA---E-KYQTVIADICRRMGIGMA---EFL-DKHVTSEQEWDKYCHYVAGLVGIG 155 (343)
T ss_dssp -CCSTT-THHHHTHHHHHHHHHH-SC---H-HHHHHHHHHHHHHHHHHH---HGG-GCCCCSHHHHHHHHHHHTHHHHHH
T ss_pred -CChhh-HHHHhcCcHHHHHHHH-hH---H-HHHHHHHHHHHHHHHHHH---Hhc-cCCCCCHHHHHHHHHhCcHHHHHH
Confidence 11221 2222211111111110 00 0 000111222334444443 233 256789998888877777766555
Q ss_pred HHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCcchH-HHHHhcCCCCHH---------HHH
Q 010986 356 TASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAV-ECYMKQHVVSEE---------EAE 425 (496)
Q Consensus 356 ~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V-~cyM~e~g~S~e---------eA~ 425 (496)
++-.++....-++. .+ .........+...-+.|=+........+|-+ .+ .-.|.++|++.+ .+.
T Consensus 156 ~~~l~~~~~~~~~~-~~---~~~~~A~~lG~AlQltNilRDv~eD~~~gR~--YlP~e~l~~~g~~~~dl~~~~~~~~~~ 229 (343)
T 3vj8_A 156 LSRLFSASEFEDPL-VG---EDTERANSMGLFLQKTNIIRDYLEDQQGGRE--FWPQEVWSRYVKKLGDFAKPENIDLAV 229 (343)
T ss_dssp HHHHHHHHTSSCHH-HH---HCHHHHHHHHHHHHHHHHHHTHHHHHHTTCC--CSCHHHHTTTCSSGGGGGSGGGHHHHH
T ss_pred HHHHhCCCCCccch-hh---hHHHHHHHHHHHHHHHHHHHHhHHHHhCCCe--eCCHHHHHHcCCCHHHHhcccCCHHHH
Confidence 55555543211111 11 1123344445555555555555566667754 12 234677888765 345
Q ss_pred HHHHHHHHHHHHHhhHHHhhc-cCCCChh-----HHHHHHHHHh-hhHhhcccCCCCCC
Q 010986 426 KALWLEIANGWKDLNYEELLN-LIAMPLP-----LLGPVLNLAR-MSEFIYEDGVDRYT 477 (496)
Q Consensus 426 ~~i~~~i~~~wk~ln~~~~l~-~~~~p~~-----~~~~~~n~aR-~~~~~Y~~~~D~~t 477 (496)
.-+..++..+..-+. +... ...+|.. |.-. +-++. ++.-+|++. |-+.
T Consensus 230 ~~l~~l~~~A~~~~~--~a~~~~~~L~~~~~~~~~~ip-~~lA~~tL~~i~~~~-~v~~ 284 (343)
T 3vj8_A 230 QCLNELITNALHHIP--DVITYLSRLRNQSVFNFCAIP-QVMAIATLAACYNNQ-QVFK 284 (343)
T ss_dssp HHHHHHHHHHHTTHH--HHHHHHHTCCCHHHHHHHHHH-HHHHHHHHHHHTTCG-GGGT
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhCCccchhhHHHHH-HHHHHHHHHHHHhCC-cccc
Confidence 556777777665544 3332 2346653 2211 22222 455567765 6553
No 50
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=30.00 E-value=3.1e+02 Score=26.70 Aligned_cols=101 Identities=6% Similarity=-0.049 Sum_probs=61.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHH--HHHhcCCCCCHHHHHhhhchhHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA--SFLDMGDIATKEVFEWVLKVPKIITAS 384 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~--~~~~~g~~l~~e~~e~~~~~p~l~~~~ 384 (496)
.....+.++...++.|-..+..|.. +.-||.++|+..-..-+|......+ .-...|.. .+ ....+-...
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~------~l~~~g~~l 192 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AK------IYADFGLNF 192 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HH------HHHHHHHHH
Confidence 3455677888899999999999964 4568999999876555554432221 11222322 22 224566677
Q ss_pred HHHHHHhcCccchhhh-----------hhcCCCcchHHHHHhcC
Q 010986 385 ENICRLLDDVASHKFE-----------QKRGHIPSAVECYMKQH 417 (496)
Q Consensus 385 ~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyM~e~ 417 (496)
+...-+.||+..+.-. ...|.. +...+|.-++
T Consensus 193 G~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-T~p~i~al~~ 235 (315)
T 3tc1_A 193 GMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKT-TLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCC-CHHHHHHHTT
T ss_pred HHHHHHHHHHhcccCCHHHhCCChhhHHHcCCh-hHHHHHHHHh
Confidence 7777888988776432 222333 6666666554
No 51
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=28.75 E-value=2.7e+02 Score=26.85 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=56.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh-cCCCCCHHHHHhhhchhHHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD-MGDIATKEVFEWVLKVPKIITASE 385 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~e~~e~~~~~p~l~~~~~ 385 (496)
.....+.+.+..++.+-..+..|......||.++|+..-..-+|.........-+ .+. .++ ..-.+-...+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHH
Confidence 4556678888999999999999987666899999999877655544322221111 111 121 1245666777
Q ss_pred HHHHHhcCccchh
Q 010986 386 NICRLLDDVASHK 398 (496)
Q Consensus 386 ~i~RL~NDI~S~~ 398 (496)
...-+.||+..+.
T Consensus 183 ~aFQi~DD~ld~~ 195 (301)
T 2q80_A 183 LFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 7788888888764
No 52
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=28.29 E-value=1.5e+02 Score=29.50 Aligned_cols=105 Identities=8% Similarity=-0.021 Sum_probs=63.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHh-----------hCCC----CCCHHHhhhhhhhccchH-HH--HHHHHHhcCCCCCHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWL-----------KEGY----VPSVEEYKSVALRSIAVL-PV--VTASFLDMGDIATKE 369 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~-----------~~g~----vPt~eEYl~~~~~S~g~~-~~--~~~~~~~~g~~l~~e 369 (496)
++..+.++...++.|-..+..|. ..|. .||.++|+..-..-+|.. .. +.+.-+..| ..+++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~~~~ 230 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AAASV 230 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CCCHH
Confidence 45667778888999999999887 3223 489999999876655544 22 222222223 12333
Q ss_pred HHHhhhchhHHHHHHHHHHHHhcCccchhhh----------hhcCCCcchHHHHHhcC
Q 010986 370 VFEWVLKVPKIITASENICRLLDDVASHKFE----------QKRGHIPSAVECYMKQH 417 (496)
Q Consensus 370 ~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE----------~~rG~~~n~V~cyM~e~ 417 (496)
..+. .-.+-...+...-+.||+..+.-. ...|.. +...++.-++
T Consensus 231 ~~~~---l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~-T~p~l~al~~ 284 (362)
T 1yhl_A 231 EMNL---VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKC-SWLAVTFLGK 284 (362)
T ss_dssp CHHH---HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCC-CHHHHHHHTT
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCc-hHHHHHHHHh
Confidence 2222 245667777777899998877532 223443 6665665544
No 53
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=28.18 E-value=4.6e+02 Score=26.16 Aligned_cols=77 Identities=17% Similarity=0.006 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHH-H--HHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhc
Q 010986 316 MQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLP-V--VTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLD 392 (496)
Q Consensus 316 w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~-~--~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~N 392 (496)
...++.+-..+..|...+ .||.++|+..-..-+|... . +.+.-+..| .+++..+. .-.+-+..+...-+.|
T Consensus 184 ~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag--a~~~~~~~---l~~~G~~lG~AFQI~D 257 (380)
T 3lk5_A 184 RTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG--GSPQLIDA---LLHYGHDIGIAFQLRD 257 (380)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 356778888888887644 6799999997666555441 1 112222223 34554433 3556777778888999
Q ss_pred Cccchh
Q 010986 393 DVASHK 398 (496)
Q Consensus 393 DI~S~~ 398 (496)
|+..+-
T Consensus 258 DiLd~~ 263 (380)
T 3lk5_A 258 DLLGVF 263 (380)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 988774
No 54
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=27.99 E-value=1.2e+02 Score=30.04 Aligned_cols=86 Identities=14% Similarity=0.042 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCC--CCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHhhhchhHHHHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEG--YVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITA 383 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g--~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~l~~~ 383 (496)
.+..+.+....++.|-..+..|.... ..||.++|+..-..-+|......... ...| .+++ . ...-.+-+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP--SSHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC--C----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CcHH-H---HHHHHHHHH
Confidence 45567778888999999999998755 57899999998766555443222211 1122 1221 1 233567778
Q ss_pred HHHHHHHhcCccchhh
Q 010986 384 SENICRLLDDVASHKF 399 (496)
Q Consensus 384 ~~~i~RL~NDI~S~~k 399 (496)
.+...-+.||+..+.-
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888889999987753
No 55
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=27.78 E-value=48 Score=25.53 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 010986 417 HVVSEEEAEKALWLEIANGWKDL 439 (496)
Q Consensus 417 ~g~S~eeA~~~i~~~i~~~wk~l 439 (496)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888643
No 56
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=27.49 E-value=4.6e+02 Score=26.11 Aligned_cols=86 Identities=9% Similarity=-0.011 Sum_probs=53.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCCCCCH-HHhhhhhhhccchH-H--HHHHHHHhcCCCCCHHH--HHhhhchhHHH
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSV-EEYKSVALRSIAVL-P--VVTASFLDMGDIATKEV--FEWVLKVPKII 381 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~-eEYl~~~~~S~g~~-~--~~~~~~~~~g~~l~~e~--~e~~~~~p~l~ 381 (496)
.+..+.++....+.|-..+..|...+..+++ ++|+..-..-+|.. . .+.+.-+..|. +++. . .....+-
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~~~~---~~l~~~g 243 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSSAQL---NLIEAIL 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCCSST---TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhHHHH---HHHHHHH
Confidence 4556778888899999999888766634455 99998766555544 1 12222222332 2221 1 1234566
Q ss_pred HHHHHHHHHhcCccchh
Q 010986 382 TASENICRLLDDVASHK 398 (496)
Q Consensus 382 ~~~~~i~RL~NDI~S~~ 398 (496)
...+...-+.||+..+.
T Consensus 244 ~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 244 YKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777888899988775
No 57
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=27.02 E-value=1.7e+02 Score=28.60 Aligned_cols=88 Identities=14% Similarity=0.023 Sum_probs=57.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh-cCCCCCHHHHHhhhchhHHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD-MGDIATKEVFEWVLKVPKIITASE 385 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~e~~e~~~~~p~l~~~~~ 385 (496)
..+..+.++...++.|-..+..|.. +..||.++|+..-..-+|.....++..-+ ++ ..+++..+.+ -.+-...+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~~lG 204 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEASCHLGALSS-QLDEQSTYHI---KQFGHCIG 204 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 3556677788889999999999865 33589999999877655555332221111 12 2455544332 55667777
Q ss_pred HHHHHhcCccchhh
Q 010986 386 NICRLLDDVASHKF 399 (496)
Q Consensus 386 ~i~RL~NDI~S~~k 399 (496)
...-+.||+..+.-
T Consensus 205 ~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 205 MSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC
Confidence 77788999887753
No 58
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=26.78 E-value=2.8e+02 Score=26.78 Aligned_cols=84 Identities=13% Similarity=-0.013 Sum_probs=53.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHH--HHHhcCCCCCHHHHHhhhchhHHHHHH
Q 010986 307 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA--SFLDMGDIATKEVFEWVLKVPKIITAS 384 (496)
Q Consensus 307 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~--~~~~~g~~l~~e~~e~~~~~p~l~~~~ 384 (496)
..+..+.++...++.|-..+..|.... ||.++|+..-..-+|......+ .-...|. +++. + -.+-...
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~~---l---~~~g~~l 196 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE--LGED---L---YNLGVTI 196 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCHH---H---HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC--CHHH---H---HHHHHHH
Confidence 456677888899999999999997654 9999999876665555422211 1111232 1121 1 3455666
Q ss_pred HHHHHHhcCccchhhh
Q 010986 385 ENICRLLDDVASHKFE 400 (496)
Q Consensus 385 ~~i~RL~NDI~S~~kE 400 (496)
+...-+.||+..+.-.
T Consensus 197 G~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 197 GTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCc
Confidence 7777788888776543
No 59
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.41 E-value=72 Score=27.13 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCh-hhHHHHHHHHHHHhhccccCCC------ccchhHHHHHHHHHHHhhhhhcc
Q 010986 185 AHQKELSDMTRWWKDLDIPTKLP-YARDRMVEVYFWTLVGVYCEPK------YTFGRILVSKIICLISLIDDTFD 252 (496)
Q Consensus 185 ~hq~El~~lsrWw~~~~l~~~l~-faRdr~ve~yf~~~~a~~~eP~------~s~~Rl~~aK~~~l~~viDD~fD 252 (496)
+.-+|++++.+|..++.|..... ..|| +...|.-|=.-..|.|+ |+.+.-.-+|...|-++=--+|-
T Consensus 12 l~~ee~~el~~WL~~l~Ls~~~rn~rRD-FSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~ 85 (127)
T 2ee7_A 12 VDEEALHQLYLWVDNIPLSRPKRNLSRD-FSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLK 85 (127)
T ss_dssp CCHHHHHHHHHHHHHSCCSCCSSCHHHH-HTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCchhhh-ccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHH
Confidence 45689999999999999964332 4454 55554444112233465 55555566788888775445554
No 60
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=22.84 E-value=1e+02 Score=29.63 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCc
Q 010986 319 VILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDV 394 (496)
Q Consensus 319 ~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 394 (496)
.+.+...+..|..+ .||.++|...-..-+|...... ...| ++ ..+++..+.+ .++-+..+...-+.||+
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a-~~lGaila-ga~~~~~~~l---~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACG-AACGAILG-GAAEEEIQKL---RNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 45666666666433 7899999986544444433222 2222 12 2455544333 55667777777889997
No 61
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=22.81 E-value=5.6e+02 Score=25.56 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=50.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCC-----------------------CCCCHHHhhhhhhhccchH---HHHHHHHHh
Q 010986 308 GIPYAKQTMQEVILMYFTEAKWLKEG-----------------------YVPSVEEYKSVALRSIAVL---PVVTASFLD 361 (496)
Q Consensus 308 ~~~~~~~~w~~~~~a~l~EA~W~~~g-----------------------~vPt~eEYl~~~~~S~g~~---~~~~~~~~~ 361 (496)
++..+.++....+.|-..+..|.... ..+|+++|++.-..=+|.. ..+.+..+.
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ 258 (395)
T 3mav_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455666677777777777664321 2358999998765544433 122222333
Q ss_pred cCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchh
Q 010986 362 MGDIATKEVFEWVLKVPKIITASENICRLLDDVASHK 398 (496)
Q Consensus 362 ~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~ 398 (496)
.|-..+++..+.+ ..+-...+...-+.||+..+.
T Consensus 259 ag~~~d~~~~~~l---~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 259 AGIAVDNLIYKKI---EDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp TTCCTTCTHHHHH---HHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCcchhHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 3433344433332 456666777778889887763
Done!