BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010987
(496 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5PPG7|EIF2D_RAT Eukaryotic translation initiation factor 2D OS=Rattus norvegicus
GN=Eif2d PE=2 SV=1
Length = 570
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 156/506 (30%), Positives = 248/506 (49%), Gaps = 63/506 (12%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
M PG+ +P GLP G+ A+ + GN AP+AVG MS+ + L +GL+GK + + H Y
Sbjct: 113 MLPGVVVPPTGLPQVQQGDLCAIALVGNRAPVAVGVAAMSTAQMLASGLKGKGISVLHTY 172
Query: 61 RDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAAD--------SSNDQKNG 112
+D LW S + S P L DP +DSCE AD S + +
Sbjct: 173 QDHLWRSGDKSSPPAIAPL------DP--------TDSCEEKADLGLHGNLRSLSLEGEE 218
Query: 113 EEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTE 172
E G + A+ +PNS + +QD DG ++ E
Sbjct: 219 ENGQVPNPEASDDPNSRALSQDSVDGKPLQ-----------------------------E 249
Query: 173 DVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQ 232
+D L++C L AL + VK DLP+ STL +H+ C P G LDIKKSS+KKL+K+LQ
Sbjct: 250 QMDELLEQCFLHALKSRVKKADLPLLTSTLLGSHMFSCCPEGQQLDIKKSSYKKLSKFLQ 309
Query: 233 AKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSF-KPEKRPAEKASQAVDHAASDNIQPA 291
++ VKE ES++ +V+ HP SF PE ASQ V + + +P
Sbjct: 310 HMQQEQIVQVKELSKGVESIV-AVDWRHPRITSFIVPE---PSLASQTVQEGSRE--KPY 363
Query: 292 KILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLD 351
++ +Y ++ +F G G SE ++ +Y ++ NLV +++V LD
Sbjct: 364 LPPDIKSLYCVPANMTQLFLESGHKKGSTLEGSEVRRIITDYAKRNNLVDADNRNLVKLD 423
Query: 352 PTLSDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQ-AHHVVSRGSQSVVRKGALKTIQI 410
P L D + + K ++ L + + +Q A+ V G + +++KG L I I
Sbjct: 424 PILCDCILE---KNEQHLVMKLPWDSLLTRCLKNLQPAYQVTFPGQEPIIKKGKLCPIDI 480
Query: 411 VTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ-EVLIQGGVI 469
+ NKK+T + LET+ +DP ++A+ LQ++ ST V+ PG K +V +QG I
Sbjct: 481 TLVLKTYNKKVTVVRNLETYGLDPCSVAAILQQRCQASTIVSPAPGAKDSLQVQVQGNQI 540
Query: 470 ADVAKHLVEQFGIPKRYIEVLDKTAR 495
+ + L+E++ +P +YI+ L+K +
Sbjct: 541 HHLGQLLLEEYRLPGKYIQGLEKAPK 566
>sp|P0CL18|EIF2D_RABIT Eukaryotic translation initiation factor 2D OS=Oryctolagus
cuniculus GN=EIF2D PE=1 SV=1
Length = 566
Score = 194 bits (493), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 154/502 (30%), Positives = 247/502 (49%), Gaps = 60/502 (11%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
M PG+ +P GLP G+ A+ + GN AP+A+G MS+ E L +GL+G+ + H Y
Sbjct: 113 MLPGLVVPPAGLPQVQKGDLCAIALVGNRAPVAIGVAAMSTEEMLTSGLKGRGFSVLHTY 172
Query: 61 RDLLWGSVEGHSVPNAGFLEDVVVEDPAFLS----TSQVSDSCEGAADSSNDQKNGEEGI 116
+D LW S + S P+ L V DPA L+ + QV+ +G ++ NGE +
Sbjct: 173 QDHLWRSGDKSSPPSIAPL----VVDPADLNDDKESVQVNPVLQG-----EEEGNGETAL 223
Query: 117 IDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDA 176
+A +A + QD D ++ E +D
Sbjct: 224 SEATSAGGQ------DQDPTDSRTLQ-----------------------------EQMDE 248
Query: 177 YLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSS 236
L +C L AL ++ DLP+ STL +H+ C P G LDIKKSS+KKL+K+LQ
Sbjct: 249 LLQQCFLHALKCRIQKADLPLLTSTLLGSHMFSCCPEGHQLDIKKSSYKKLSKFLQHMQQ 308
Query: 237 AGLISVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKILE 295
++ VKE ES++ +V+ HP SF PE SQ+V + + QP + +
Sbjct: 309 EQIVQVKELSRGVESVV-AVDWRHPRITSFVIPE---PSLTSQSVQEGSRE--QPYRPPD 362
Query: 296 VTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLS 355
+ +Y + +F G G + SE ++ NY +K +LV K++V LDP L
Sbjct: 363 IKPLYCVPASMTLLFQESGHKKGSVLEGSEVRAIIINYAKKNDLVDADNKNLVKLDPVLC 422
Query: 356 DALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQ-AHHVVSRGSQSVVRKGALKTIQIVTER 414
D L + K ++ L + + ++Q A+ V G + VV+KG + I I +
Sbjct: 423 DCLLE---KHEQHSIMKLPWDSLVTRCLEKLQPAYQVTFPGQEPVVKKGKICPIDITLAQ 479
Query: 415 RQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ-EVLIQGGVIADVA 473
R NKK+T + LE + +DP ++A+ LQ++ STTV PG K +V IQG + +
Sbjct: 480 RASNKKVTVVRNLEAYGLDPGSVAATLQQRCQASTTVTPAPGAKDSLQVQIQGNQVHHLG 539
Query: 474 KHLVEQFGIPKRYIEVLDKTAR 495
+ L+E++ +P++YI+ L+ +
Sbjct: 540 RLLLEEYHLPRKYIQGLEHAPK 561
>sp|Q61211|EIF2D_MOUSE Eukaryotic translation initiation factor 2D OS=Mus musculus
GN=Eif2d PE=2 SV=3
Length = 570
Score = 189 bits (479), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 150/498 (30%), Positives = 240/498 (48%), Gaps = 47/498 (9%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
M PG+ +P GLP G+ A+ + GN AP+A+G MS+ + L +GL+GK + + H Y
Sbjct: 113 MLPGVVVPPTGLPQVQQGDLCAIALVGNRAPVAIGVAAMSTAQMLASGLKGKGVSVLHTY 172
Query: 61 RDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDAD 120
+D LW S + S P L DP +V +G S E G +
Sbjct: 173 QDHLWRSGDKSSPPAIAPL------DPTDSCEEKVHLGLQGNLKSLTLDGEEENGQVPLR 226
Query: 121 NANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDK 180
A+ + +S + +QD DG ++ E +D L +
Sbjct: 227 EASEDTSSRAPSQDSLDGKPLQ-----------------------------EQMDDLLLR 257
Query: 181 CLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLI 240
C L AL + VK DLP+ STL +H+ C P G LDIKKSS+KKL+K+LQ ++
Sbjct: 258 CFLHALKSRVKKADLPLLTSTLLGSHMFSCCPEGQQLDIKKSSYKKLSKFLQHMQQEQIV 317
Query: 241 SVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKILEVTEV 299
VKE ES++ +V+ HP SF PE SQ V + + QP ++ +
Sbjct: 318 QVKELSKGVESIV-AVDWRHPRITSFVIPE---PSLTSQTVQEVSRE--QPYLPPDIKSL 371
Query: 300 YKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALF 359
Y ++ +F G G SE ++ +Y ++ LV +++V LDP L D +
Sbjct: 372 YCVPANMTQLFLESGHKKGSTLEGSEVRKIITDYAKRNRLVDADNRNLVKLDPILCDCIL 431
Query: 360 KGAIKKGTTYPTEIHKKDLGSTFVNRMQ-AHHVVSRGSQSVVRKGALKTIQIVTERRQGN 418
+ K T++ L + + MQ A+ V G + +++KG L I I + N
Sbjct: 432 E---KNEQHLVTKLPWDCLLTRCLKNMQPAYQVTFPGQEPILKKGKLCPIDITLALKTYN 488
Query: 419 KKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ-EVLIQGGVIADVAKHLV 477
KK+T + LET+ +DP ++A+ LQ++ ST V+ PG K +V +QG I + + L+
Sbjct: 489 KKVTVVRNLETYGLDPCSVAAILQQRCQASTIVSPAPGAKDSLQVQVQGNQIHHLGQLLL 548
Query: 478 EQFGIPKRYIEVLDKTAR 495
E++ +P +YI+ L+K +
Sbjct: 549 EEYRLPGKYIQGLEKAPK 566
>sp|Q58CR3|EIF2D_BOVIN Eukaryotic translation initiation factor 2D OS=Bos taurus GN=EIF2D
PE=2 SV=1
Length = 579
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 155/498 (31%), Positives = 244/498 (48%), Gaps = 39/498 (7%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
M PG+ +P GLP G+ AV + GN AP+AVG MS+ E L +GL+G+ + H Y
Sbjct: 113 MLPGLVVPPAGLPQVQKGDLCAVALVGNRAPVAVGVAAMSTAEMLASGLKGRGFCVLHSY 172
Query: 61 RDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDAD 120
+D LW S + S P+ L +P LS + + A + Q EE +
Sbjct: 173 QDHLWRSGDKSSPPSIAPL----ALNPPDLSEGKGCVKADTALQGAMRQLTLEE---EVQ 225
Query: 121 NANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDK 180
E + + AT+D G + +VD ++ E +D L
Sbjct: 226 QRCEEKSPSEATEDPGPGGL---------------HVDPMDSKT-----LQEQMDELLQT 265
Query: 181 CLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLI 240
C L AL +V+ DLP+ STL +H+ C P G LDIKKSS+KKL+K+LQ +I
Sbjct: 266 CFLHALKCSVRKADLPLLTSTLLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQHMQQEQII 325
Query: 241 SVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKILEVTEV 299
V+E ES++ +V+ HP SF PE P SQ + + + QP ++ +
Sbjct: 326 QVQELSKGVESIV-AVDWKHPRITSFVIPEPSP---TSQTIQEGSRE--QPYHPPDIKPL 379
Query: 300 YKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALF 359
Y + +F G G + SE V NY +K +LV K++V LDP L D +
Sbjct: 380 YCVPASMTLLFQESGHKKGSVLEGSEVRTFVINYAKKNDLVDADNKNLVKLDPILCDCIL 439
Query: 360 KGAIKKGTTYPTEIHKKDLGSTFVNRMQ-AHHVVSRGSQSVVRKGALKTIQIVTERRQGN 418
+ K T++ L + ++Q A+ V G + +V+KG + I I ++ N
Sbjct: 440 E---KDEQHTVTKLPWDSLLGRCLEKLQPAYQVTFPGQEPIVKKGRICPIDITLAQKASN 496
Query: 419 KKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPG-KKGQEVLIQGGVIADVAKHLV 477
KK+T + LE + +DP ++A+ LQ++ STTV PG K +V IQG I + + L+
Sbjct: 497 KKVTVVRNLEAYGLDPRSVAATLQQRCQASTTVTSAPGLKDSVQVQIQGNQIHHLGRLLL 556
Query: 478 EQFGIPKRYIEVLDKTAR 495
E++ +P+++I+ L+K +
Sbjct: 557 EEYRLPRKHIQGLEKAPK 574
>sp|Q5RA63|EIF2D_PONAB Eukaryotic translation initiation factor 2D OS=Pongo abelii
GN=EIF2D PE=2 SV=1
Length = 584
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 148/498 (29%), Positives = 240/498 (48%), Gaps = 34/498 (6%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
M PG+ +P GLP G+ A+ + GN AP+A+G MS+ E L +GL+G+ + H Y
Sbjct: 113 MLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTY 172
Query: 61 RDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDAD 120
+D LW S S P+ P L ++ +S+ S Q + ++ +
Sbjct: 173 QDHLWRSGNKSSPPSIA---------PLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGE 223
Query: 121 NANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDK 180
N E + + + + D L ++ +T +E +D L +
Sbjct: 224 EENGEVHQAREDKS------LSEAPEDTSTRGLNQDSTDSKTLQEQ-------MDELLQQ 270
Query: 181 CLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLI 240
C L AL VK DLP+ ST +H+ C P G LDIKKSS+KKL+K+LQ +I
Sbjct: 271 CFLHALKCRVKKADLPLLASTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQII 330
Query: 241 SVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKILEVTEV 299
VKE ES++ +V+ HP SF PE P SQ + + + QP ++ +
Sbjct: 331 QVKELSKGVESIV-AVDWKHPRITSFVIPEPSP---TSQTIQEGSRE--QPYHPPDIKPL 384
Query: 300 YKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALF 359
Y + +F G G SE +V NY +K +LV K++V LDP L D +
Sbjct: 385 YCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCIL 444
Query: 360 KGAIKKGTTYPTEIHKKDLGSTFVNRMQ-AHHVVSRGSQSVVRKGALKTIQIVTERRQGN 418
+ K ++ L + + ++Q A+ V G + +V+KG + I I +R N
Sbjct: 445 E---KNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASN 501
Query: 419 KKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ-EVLIQGGVIADVAKHLV 477
KK+T + LE + +DP ++A+ LQ++ STTV PG K +V IQG + + L+
Sbjct: 502 KKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLL 561
Query: 478 EQFGIPKRYIEVLDKTAR 495
E++ +P+++I+ L+K +
Sbjct: 562 EEYQLPRKHIQGLEKALK 579
>sp|P41214|EIF2D_HUMAN Eukaryotic translation initiation factor 2D OS=Homo sapiens
GN=EIF2D PE=1 SV=3
Length = 584
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 148/498 (29%), Positives = 240/498 (48%), Gaps = 34/498 (6%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
M PG+ +P GLP G+ A+ + GN AP+A+G MS+ E L +GL+G+ + H Y
Sbjct: 113 MLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTY 172
Query: 61 RDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDAD 120
+D LW S S P+ P L ++ +S+ S Q + ++ +
Sbjct: 173 QDHLWRSGNKSSPPSIA---------PLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGE 223
Query: 121 NANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDK 180
N E + + + + D L ++ +T +E +D L +
Sbjct: 224 EENGEVHQAREDKS------LSEAPEDTSTRGLNQDSTDSKTLQEQ-------MDELLQQ 270
Query: 181 CLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLI 240
C L AL VK DLP+ ST +H+ C P G LDIKKSS+KKL+K+LQ +I
Sbjct: 271 CFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQII 330
Query: 241 SVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKILEVTEV 299
VKE ES++ +V+ HP SF PE P SQ + + + QP ++ +
Sbjct: 331 QVKELSKGVESIV-AVDWKHPRITSFVIPEPSP---TSQTIQEGSRE--QPYHPPDIKPL 384
Query: 300 YKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALF 359
Y + +F G G SE +V NY +K +LV K++V LDP L D +
Sbjct: 385 YCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCIL 444
Query: 360 KGAIKKGTTYPTEIHKKDLGSTFVNRMQ-AHHVVSRGSQSVVRKGALKTIQIVTERRQGN 418
+ K ++ L + + ++Q A+ V G + +V+KG + I I +R N
Sbjct: 445 E---KNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASN 501
Query: 419 KKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ-EVLIQGGVIADVAKHLV 477
KK+T + LE + +DP ++A+ LQ++ STTV PG K +V IQG + + L+
Sbjct: 502 KKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLL 561
Query: 478 EQFGIPKRYIEVLDKTAR 495
E++ +P+++I+ L+K +
Sbjct: 562 EEYQLPRKHIQGLEKALK 579
>sp|Q04600|TMA64_YEAST Translation machinery-associated protein 64 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TMA64 PE=1
SV=1
Length = 565
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 170/375 (45%), Gaps = 21/375 (5%)
Query: 124 SEPNSTSATQDDFDGNI--VEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDKC 181
S+ N+ S+ Q + I VE+ DV + +VD E E T DVD ++ +
Sbjct: 191 SKDNNISSKQIESSEQIKAVEKEQEDVKE----ASVDVEEIAEVLDHFTVSDVDYFITRA 246
Query: 182 LLQALHTTVKDKDLPMPGSTLWSNHILPCRP--SGITLDIKKSSHKKLTKWLQAKSSAGL 239
L L T K +LP+ S SNHI+ P +++KK+S KK K+L+ G
Sbjct: 247 LYYTL-TQDKGLELPISASNFISNHIMRNLPPIDHNEVNVKKTSWKKSAKFLKHFEKEGF 305
Query: 240 ISVKEDKYKKESMLFSVNRGHPDYLSFKPEKRPAEKASQAVDHAASDNIQPAKILEVTEV 299
+ +K + + N + +F P K K++ + + + + ++ +
Sbjct: 306 LKLKGKG--DDLTIVGKNTDKDELKNFVPYKLGCSKSATESRESTTSKEKTSGMMYSLTL 363
Query: 300 YKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALF 359
YKP + V + YT + V YI +NL K V++D L D +
Sbjct: 364 YKPFNLAKDLLKEVNLASHTYYTSQDIRSAVSQYISVKNLADTKDKGKVIMDDLLFDMVN 423
Query: 360 KGAIKKGTTYPTEIHKKD--LGSTFVNRMQAHHVVSRGSQSVV----RKGALKTIQIVTE 413
K KK + I + L N + + + +++ KG+L I+I+TE
Sbjct: 424 K---KKKVLNASRIIARGEILHPLLTNNFTEFYQIFKSDDTLLFKAPMKGSLPHIKIITE 480
Query: 414 RRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVA 473
+ G K +T++S E F +DPE+LA++L+K + STT++E K EV +QG +
Sbjct: 481 MKIGRKVITRVSNFEVFQVDPESLAADLRKICSGSTTISESQTFKCAEVQVQGPHGQSII 540
Query: 474 KHLVEQFGIPKRYIE 488
HL + GIP ++I+
Sbjct: 541 DHL-NKLGIPSKWID 554
>sp|Q1E556|DENR_COCIM Translation machinery-associated protein 22 OS=Coccidioides immitis
(strain RS) GN=TMA22 PE=3 SV=1
Length = 200
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 401 RKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ 460
RK A K +QI R K +T ++GLE +D + +A EL KKFA ++V + P G+
Sbjct: 100 RKAAAK-VQIKRVERNKRKHVTVIAGLEAHGLDNKKVAKELGKKFATGSSVTKNPA-GGE 157
Query: 461 EVLIQGGVIADVAKHLVEQFG--IPKRYIEVLD 491
E+ +QG V DV + LVE G +P+ +E+++
Sbjct: 158 EITVQGDVCEDVLEWLVEVHGKEVPEDNLEIVE 190
>sp|Q2TVZ2|DENR_ASPOR Translation machinery-associated protein 22 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=tma22 PE=3 SV=1
Length = 194
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 401 RKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ 460
RK A K +QI R K +T ++GLE + ++ + +A EL KKFA ++V +
Sbjct: 96 RKAASK-VQIKRVERNKRKHVTVIAGLEVYGLENKKVAKELGKKFATGSSVTR-SAAGNE 153
Query: 461 EVLIQGGVIADVAKHLVEQFG--IPKRYIEVLDKTARK 496
E+ +QG V DV L+E +G IP+ IE+++ +K
Sbjct: 154 EITVQGDVSDDVQDWLLEVYGKEIPEANIEIIEDKKKK 191
>sp|A7TES6|DENR_VANPO Translation machinery-associated protein 22 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=TMA22 PE=3
SV=1
Length = 206
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 385 RMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKK 444
R+QA +R + + +K + K + I E R K + +SGLE F +D + LA K
Sbjct: 77 RLQAKQE-NREQRELAKKLSSKVV-IKREARTKRKFIVAISGLEVFEIDMKKLAKTFASK 134
Query: 445 FACSTTVAELPGKKGQEVLIQGGVIADVAKH---LVEQFGIPKRYIEVLDKTARK 496
FA +V++ KK E++IQG V+ +V K+ L+E+ G+ +E++D +K
Sbjct: 135 FATGCSVSKNAEKK-DEIVIQGDVLEEVEKYIHSLLEEKGLKNVKLEIIDSQKKK 188
>sp|A1C8E3|DENR_ASPCL Translation machinery-associated protein 22 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=tma22 PE=3 SV=1
Length = 194
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 401 RKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ 460
RK A K +QI R K +T ++GLE ++ + +A EL KKFA ++V + P +
Sbjct: 96 RKAAAK-VQIKRVERNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPA-GVE 153
Query: 461 EVLIQGGVIADVAKHLVEQFG--IPKRYIEVLDKTARK 496
E+ +QG V DV + L+E +G +P+ IE+++ +K
Sbjct: 154 EITVQGDVSEDVQEWLLEVYGKELPESNIELVEDKKKK 191
>sp|A1DAY1|DENR_NEOFI Translation machinery-associated protein 22 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=tma22 PE=3 SV=1
Length = 194
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 404 ALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVL 463
A +QI R K +T ++GLE ++ + +A EL KKFA ++V + P +E+
Sbjct: 98 AAAKVQIKRVERNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGV-EEIT 156
Query: 464 IQGGVIADVAKHLVEQFG--IPKRYIEVLDKTARK 496
+QG V DV + L+E +G IP+ IE+++ +K
Sbjct: 157 VQGDVSEDVQEWLLELYGKEIPESNIELVEDKKKK 191
>sp|Q4WBL6|DENR_ASPFU Translation machinery-associated protein 22 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=tma22 PE=3 SV=2
Length = 194
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 408 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 467
+QI R K +T ++GLE ++ + +A EL KKFA ++V + P +E+ +QG
Sbjct: 102 VQIKRVERNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGV-EEITVQGD 160
Query: 468 VIADVAKHLVEQFG--IPKRYIEVLDKTARK 496
V DV + L+E +G IP+ IE+++ +K
Sbjct: 161 VSEDVKEWLLELYGKEIPESNIELVEDKKKK 191
>sp|Q9P3T4|DENR_NEUCR Translation machinery-associated protein 22 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=tma-22 PE=3 SV=1
Length = 187
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 86/178 (48%), Gaps = 4/178 (2%)
Query: 315 ADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIH 374
A TGR + C + Y E VK + + PT+ ++ + + +
Sbjct: 3 ALTGRPVVYCGVCSLPPEYCEYGGTVKKCQQWLEKNQPTMYSRIWSPEVLEAEMASLSVE 62
Query: 375 KKDLGSTFVNRMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDP 434
++ + A + Q+ R ++ TI+ + R K +T +SGLE F ++
Sbjct: 63 AQERAMKDAKKKAAKAEAAEQKQADKRANSVVTIKRI--ERNKRKYVTSVSGLEAFGLEL 120
Query: 435 EALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFG-IPKRYIEVLD 491
+ +A + KKFA ++V ++P G+E+++QG V ++ + ++E++ +P+ IE+++
Sbjct: 121 KKVAKDFGKKFATGSSVTKVPS-GGEEIVVQGDVSGEIEEFILEKYKEVPEDNIELVE 177
>sp|A4QVI3|DENR_MAGO7 Translation machinery-associated protein 22 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=TMA22 PE=3
SV=2
Length = 201
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
Query: 405 LKTIQIVTERRQGNKK--MTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEV 462
LK + +R + NK+ +T +SGLE+F ++ + +A + KKFA ++V ++ G+E+
Sbjct: 99 LKKSVVTVKRIERNKRKYVTSVSGLESFGLELKKVAKDFGKKFATGSSVTKV-ASGGEEI 157
Query: 463 LIQGGVIADVAKHLVEQF-GIPKRYIEVLD 491
++QG V ++ + +VE++ +P+ IE++D
Sbjct: 158 VVQGDVSDEIKEFIVEKYKDVPEDNIELVD 187
>sp|Q2H5Z7|DENR_CHAGB Translation machinery-associated protein 22 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=TMA22 PE=3 SV=1
Length = 188
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 415 RQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 474
R K +T ++GLE F ++ + +A + KKFA +V ++P G+E+++QG V ++ +
Sbjct: 103 RNKRKFVTSVTGLEAFGLELKKVAKDFGKKFATGASVTKVPS-GGEEIVVQGDVSGEIEE 161
Query: 475 HLVEQFG-IPKRYIEVLDKTARK 496
L+E++ IP+ IE+++ +K
Sbjct: 162 FLLEKYKDIPEDNIELVEDKKKK 184
>sp|A6SIZ0|DENR_BOTFB Translation machinery-associated protein 22 OS=Botryotinia
fuckeliana (strain B05.10) GN=tma22 PE=3 SV=1
Length = 197
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 408 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 467
I+I R K +T++ GLE F ++ + +A E +FA ++V ++ GQE+ +QG
Sbjct: 103 IRIKRVERNKRKYVTEVQGLEAFGLELKKVAKEFGSRFATGSSVTKV-ASGGQEITVQGD 161
Query: 468 VIADVAKHLVEQF-GIPKRYIEVLDKTARK 496
V DV + L++ + IPK+ I VL++ +K
Sbjct: 162 VSDDVREFLIKNYKNIPKKNI-VLEEPKKK 190
>sp|A2QHG9|DENR_ASPNC Translation machinery-associated protein 22 OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=tma22 PE=3 SV=1
Length = 197
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 404 ALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVL 463
A +QI R K +T ++GL+ + ++ + +A +L KKFA +++ G +E+
Sbjct: 98 AASKVQIKRVERNKRKHVTVITGLDIYGLENKKIAKDLGKKFATGSSMTRSAGGT-EEIT 156
Query: 464 IQGGVIADVAKHLVEQFG--IPKRYIEVLDKTARK 496
+QG V DV + L+E +G IP+ IE+++ +K
Sbjct: 157 VQGDVSDDVKEWLLEVYGKEIPEANIELIEDKKKK 191
>sp|Q6CJ30|DENR_KLULA Translation machinery-associated protein 22 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=TMA22 PE=3 SV=1
Length = 200
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 393 SRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVA 452
+R + + +K + K + I E R K M +SGLE F +D + L+ KFA +++
Sbjct: 81 AREERELAKKLSSKVV-IRREARTKRKCMIAISGLEVFEIDMKKLSKTFASKFATGCSIS 139
Query: 453 ELPGKKGQEVLIQGGVIADVAKH---LVEQFGIPKRYIEVLD 491
+ KK +EV++QG + +V + L+E+ G+ + +EV+D
Sbjct: 140 KNAEKK-EEVIVQGDLADEVEAYIHSLLEEKGMKEVKVEVID 180
>sp|Q6FXQ4|DENR_CANGA Translation machinery-associated protein 22 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=TMA22 PE=3 SV=1
Length = 196
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 413 ERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADV 472
E R K + +SGLE F +D + LA KFA +V++ KK +EV++QG V+ +V
Sbjct: 102 EARTKRKYIVAISGLEVFEIDMKKLAKTFASKFATGCSVSKNAEKK-EEVVVQGDVLDEV 160
Query: 473 AKH---LVEQFGIPKRYIEVLDKTARK 496
+ L+E+ G+ +E +D +K
Sbjct: 161 VAYIHSLLEEKGMKDVKVETIDTKKKK 187
>sp|P47089|DENR_YEAST Translation machinery-associated protein 22 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TMA22 PE=1
SV=1
Length = 198
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 393 SRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVA 452
+R + + +K + K I I E R K + +SGLE F +D + LA +FA +V+
Sbjct: 85 NREQRELAKKLSSKVI-IKREARTKRKFIVAISGLEVFDIDMKKLAKTFASRFATGCSVS 143
Query: 453 ELPGKKGQEVLIQGGVIADVAKH---LVEQFGIPKRYIEVLD 491
+ KK +EV+IQG V+ +V + L+E+ G+ +E +D
Sbjct: 144 KNAEKK-EEVVIQGDVMDEVETYIHSLLEEKGLKDVKVETID 184
>sp|A6ZPY2|DENR_YEAS7 Translation machinery-associated protein 22 OS=Saccharomyces
cerevisiae (strain YJM789) GN=TMA22 PE=3 SV=1
Length = 198
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 393 SRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVA 452
+R + + +K + K I I E R K + +SGLE F +D + LA +FA +V+
Sbjct: 85 NREQRELAKKLSSKVI-IKREARTKRKFIVAISGLEVFDIDMKKLAKTFASRFATGCSVS 143
Query: 453 ELPGKKGQEVLIQGGVIADVAKH---LVEQFGIPKRYIEVLD 491
+ KK +EV+IQG V+ +V + L+E+ G+ +E +D
Sbjct: 144 KNAEKK-EEVVIQGDVMDEVETYIHSLLEEKGLKDVKVETID 184
>sp|A5E3R9|DENR_LODEL Translation machinery-associated protein 22 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=TMA22 PE=3 SV=1
Length = 196
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 385 RMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKK--MTKLSGLETFLMDPEALASELQ 442
+ QA H + + + ++ + +I+ +R + NK+ + +SGLE F ++P+ LA
Sbjct: 90 KKQAKHQLKQEKELTKKQNS----KIIIKRIERNKRKHIISISGLEVFQIEPKKLAKTFA 145
Query: 443 KKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQF 480
KFA +V + +K EV++QG V +D AK +E+
Sbjct: 146 SKFATGASVVK-NAEKLDEVVVQGDV-SDEAKEYIEKL 181
>sp|O42929|DENR_SCHPO Translation machinery-associated protein 22 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tma22 PE=3 SV=1
Length = 190
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 408 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 467
+ I T R K++T + GL+ F ++ + A L KFA +V + KK E+++QG
Sbjct: 99 VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKK-DEIVVQGD 157
Query: 468 VIADVAKHLVEQFG-IPKRYIEVLDKTARK 496
+ D+ ++E+F +P+ I++++ T K
Sbjct: 158 LNYDIFDFILEKFKEVPEDNIKIVEDTKSK 187
>sp|A3LSY0|DENR_PICST Translation machinery-associated protein 22 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=TMA22 PE=3 SV=1
Length = 195
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 415 RQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 474
R K + +SGLE F +D + LA KFA +V + KK +E+L+QG V +D AK
Sbjct: 101 RNRRKHIISISGLEVFNIDMKKLAKTFASKFATGASVTKTADKK-EEILVQGDV-SDEAK 158
Query: 475 HLVEQF 480
+E+
Sbjct: 159 EYIEKL 164
>sp|P79060|SUI1_SCHPO Protein translation factor sui1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sui1 PE=3 SV=3
Length = 109
Score = 39.7 bits (91), Expect = 0.050, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 405 LKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLI 464
L I I ++R G K +T + GL D + + L+K FAC+ T+ + G+ + +
Sbjct: 24 LNNIHIRIQQRNGRKTLTTVQGLPREF-DQKRILRALKKDFACNGTIVK-DDDLGEVIQL 81
Query: 465 QGGVIADVAKHLVEQFGIPKRYIEV 489
QG V + L +Q G+ K+ I++
Sbjct: 82 QGDQRIKVMEFLTQQLGLQKKNIKI 106
>sp|P32911|SUI1_YEAST Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUI1 PE=1
SV=1
Length = 108
Score = 39.3 bits (90), Expect = 0.078, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 408 IQIVTERRQGNKKMTKLSGL-ETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQG 466
I I ++R G K +T + G+ E + D + + L+K FAC+ + + P + G+ + +QG
Sbjct: 26 IHIRIQQRNGRKTLTTVQGVPEEY--DLKRILKVLKKDFACNGNIVKDP-EMGEIIQLQG 82
Query: 467 GVIADVAKHLVEQFGIPKRYIEV 489
A V + ++ Q G+ K+ I++
Sbjct: 83 DQRAKVCEFMISQLGLQKKNIKI 105
>sp|Q8TX33|SUI1_METKA Protein translation factor SUI1 homolog OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0844 PE=3 SV=1
Length = 106
Score = 39.3 bits (90), Expect = 0.081, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 400 VRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKG 459
V K ++ I+I TE+ + K +T + GL+ +D + LAS+L+++ AC T E GK
Sbjct: 22 VSKETVEKIKIYTEQVRPGKVVTIIEGLDDAGIDLQELASKLKRECACGGTAKE--GK-- 77
Query: 460 QEVLIQGGVIADVAKHLVEQFGIPKRYIEV 489
+++QG V + L+++ G + IEV
Sbjct: 78 --IILQGDHRNKVREFLIKKEGFSEDAIEV 105
>sp|Q75CN1|DENR_ASHGO Translation machinery-associated protein 22 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=TMA22 PE=3 SV=1
Length = 199
Score = 39.3 bits (90), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 383 VNRMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQ 442
+ ++QA S+ + + RK + + + I E R K M ++GLE F +D + LA
Sbjct: 74 LQKLQAREE-SKEQRELARKLSSRVV-IRREARTKRKCMVVVAGLEVFEIDMKKLAKTFA 131
Query: 443 KKFACSTTVAELPGKKGQEVLIQGGVIADVAKH---LVEQFGIPKRYIEVLD 491
KFA +V++ KK +EV++QG + +V + L+E+ G+ +E +D
Sbjct: 132 SKFATGCSVSKNVEKK-EEVVVQGDIADEVEAYIHALLEEKGMKGVKVEQID 182
>sp|Q46F27|SUI1_METBF Protein translation factor SUI1 homolog OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=Mbar_A0534 PE=3 SV=1
Length = 102
Score = 37.7 bits (86), Expect = 0.21, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 406 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQ 465
+ I + RR+ K++T + G + +D L++ L+ KFAC TV KG V +Q
Sbjct: 26 QRITVKVNRRRYGKEVTVVEGFDASEIDLHELSTYLKSKFACGGTV------KGNTVELQ 79
Query: 466 GGVIADVAKHLVEQ 479
G +A + + L+E+
Sbjct: 80 GNHLARMKEVLMEK 93
>sp|Q8TIT3|SUI1_METAC Protein translation factor SUI1 homolog OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_4059 PE=3 SV=1
Length = 102
Score = 37.7 bits (86), Expect = 0.21, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 406 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQ 465
+ I + RR+ K++T + G + +D L++ L+ KFAC TV KG V +Q
Sbjct: 26 QRITVKVNRRRYGKEVTVVEGFDASEIDLHELSTYLKSKFACGGTV------KGNTVELQ 79
Query: 466 GGVIADVAKHLVEQ 479
G +A + + L+E+
Sbjct: 80 GNHLARMKEVLMEK 93
>sp|Q755R1|SUI1_ASHGO Protein translation factor SUI1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SUI1A
PE=3 SV=1
Length = 108
Score = 37.4 bits (85), Expect = 0.28, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 408 IQIVTERRQGNKKMTKLSGL-ETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQG 466
I I ++R G K +T + G+ E + D + + L+K F C+ + + + G+ + +QG
Sbjct: 26 IHIRIQQRNGRKTLTTVQGIPEEY--DLKRILKVLRKDFGCNGNMVK-DDEMGEIIQLQG 82
Query: 467 GVIADVAKHLVEQFGIPKRYIEV 489
A V + L+ Q IPK+ I++
Sbjct: 83 DQRAKVCEFLITQLAIPKKNIKI 105
>sp|Q6CA08|DENR_YARLI Translation machinery-associated protein 22 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=TMA22 PE=3 SV=1
Length = 188
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 393 SRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVA 452
++ + +++K A K + I R K++ +SGLE F +D + L+ KFA +V
Sbjct: 82 AKAERELLKKLASKVV-IKRIERSKRKRIISVSGLEVFELDLKKLSKTFSSKFATGASVT 140
Query: 453 ELPGKKGQEVLIQGGV---IADVAKHLVEQFGIPKRYIEVLDKTARK 496
+ K +E++IQG V + ++ ++++ G+ + +E +D+ +K
Sbjct: 141 KTADGK-EEIVIQGDVGDGVEELITQMLKEKGLNQVKVEQIDEKKKK 186
>sp|Q9NAH4|DENR_CAEEL Density-regulated protein homolog OS=Caenorhabditis elegans
GN=Y47D3A.21 PE=3 SV=1
Length = 192
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 13/86 (15%)
Query: 409 QIVTERRQ--GNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQG 466
Q VT +R+ G K +T + GL TF +D + + +KFAC ++V E++IQG
Sbjct: 108 QKVTLQREPRGKKSVTVIKGLATFDIDLKVASKLFAQKFACGSSVT-----GADEIVIQG 162
Query: 467 GVIADVAKHLVEQFGIPKRYIEVLDK 492
DV L++ IP+++ +V D+
Sbjct: 163 ----DVKDDLLDL--IPEKWKQVTDE 182
>sp|P14021|SUI1_METVA Protein translation factor SUI1 homolog OS=Methanococcus vannielii
PE=3 SV=1
Length = 102
Score = 36.6 bits (83), Expect = 0.48, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 406 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVA----ELPG---KK 458
+ I++ +R+ K MT + G + L+D + LA +L+ AC TV EL G KK
Sbjct: 25 QKIKVYVTKRRFGKLMTVVDGFDADLIDVKDLAKKLKDICACGGTVKKDSIELQGDHRKK 84
Query: 459 GQEVLIQGGVIADV 472
+E+LI+ G D+
Sbjct: 85 AEEILIKMGFSKDM 98
>sp|Q6BH22|DENR_DEBHA Translation machinery-associated protein 22 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TMA22 PE=3 SV=1
Length = 189
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 415 RQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 474
R K + +SGLE F +D + LA KFA +V + KK E+++QG V +D AK
Sbjct: 101 RNKRKHVISISGLEVFNIDMKKLAKTFASKFATGASVTKNAEKKD-EIIVQGDV-SDEAK 158
Query: 475 HLVEQF 480
+E+
Sbjct: 159 DYIEKL 164
>sp|P87313|TMA20_SCHPO Translation machinery-associated protein 20 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tma20 PE=3 SV=5
Length = 181
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 1 MFPGISIPADGLPSFLSGEPWA-VKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHY 59
M PG+ LP + + + V G AP A+G T MS+ E +K +G + HY
Sbjct: 112 MIPGLVSKGGNLPDDIEKDQYVIVTAEGKEAPAAIGLTKMSAKE-MKETNKGIGIENVHY 170
Query: 60 YRDLLWGSV 68
D LW ++
Sbjct: 171 LGDNLWKTI 179
>sp|Q8PYK3|SUI1_METMA Protein translation factor SUI1 homolog OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0858 PE=3 SV=1
Length = 102
Score = 36.2 bits (82), Expect = 0.66, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 406 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQ 465
+ I + RR+ K++T + G + +D L++ L+ KFAC TV KG V +Q
Sbjct: 26 QRITVKVNRRRYGKEVTVVEGFDASEIDLHELSTYLKSKFACGGTV------KGNTVELQ 79
Query: 466 GGVIADVAKHLVEQ 479
G + + + L+E+
Sbjct: 80 GNHLTRMKEVLMEK 93
>sp|A0RWW9|SUI1_CENSY Protein translation factor SUI1 homolog OS=Cenarchaeum symbiosum
(strain A) GN=CENSYa_1212 PE=3 SV=1
Length = 102
Score = 35.4 bits (80), Expect = 0.96, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 408 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 467
I I E R+ KK T + GL+ L + E +A EL+ K+AC T E V +QG
Sbjct: 27 IIIRLETRRFKKKGTMIEGLDPKLNNLENVAKELKNKYACGGTAKE------GYVFLQGD 80
Query: 468 VIADVAKHLVEQFGIPKRYIEV 489
D K + G P+ IE+
Sbjct: 81 H-RDTIKDTLVGLGFPESSIEL 101
>sp|Q12UF1|SUI1_METBU Protein translation factor SUI1 homolog OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_2049 PE=3 SV=1
Length = 102
Score = 35.0 bits (79), Expect = 1.4, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 406 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQ 465
+ I + RR+ K++T + G + +D L++ L+ KFAC TV KG V +Q
Sbjct: 26 QRITVKVNRRRYGKEVTVVEGFDANEIDLHELSTYLKSKFACGGTV------KGSAVELQ 79
Query: 466 GGVIADVAKHLVEQFGIPKR 485
G ++ + LV++ P++
Sbjct: 80 GNHLSRMKAVLVKKGFSPEQ 99
>sp|Q54WG0|DENR_DICDI Density-regulated protein homolog OS=Dictyostelium discoideum
GN=denr PE=3 SV=1
Length = 224
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 409 QIVTERRQGNKK--MTKLSGLETFLMDPEALASELQKKFACSTTVAE-LPGKKGQEVLIQ 465
QI+ E Q NK+ +TK++GLE + + A + KKF+C +V + + +++ IQ
Sbjct: 130 QIIIEVNQRNKRKHVTKITGLELYGIKLSDAAKVMAKKFSCGCSVVKSISNPNSEDIDIQ 189
Query: 466 GGVIADVAKHLVEQF 480
G ++ + E++
Sbjct: 190 GDFGEELVDLIEEKY 204
>sp|A5DGV3|DENR_PICGU Translation machinery-associated protein 22 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=TMA22 PE=3 SV=1
Length = 201
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 415 RQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 474
R K + +SGLE F +D + L+ KFA +V + KK E+++QG V +D A+
Sbjct: 101 RNKRKHVIAISGLEVFDIDMKKLSKTFASKFATGASVTKNAEKKD-EIIVQGDV-SDEAR 158
Query: 475 ----HLVEQFGIPKRYIEVLD 491
L+E+ G+ + +E +D
Sbjct: 159 AYIEKLLEEKGLNEVKVEQID 179
>sp|Q6LXE5|SUI1_METMP Protein translation factor SUI1 homolog OS=Methanococcus
maripaludis (strain S2 / LL) GN=MMP1406 PE=3 SV=1
Length = 102
Score = 34.3 bits (77), Expect = 2.0, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 406 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVA----ELPG---KK 458
+ I++ +R+ K MT + G + L+D + LA +L+ AC TV EL G +K
Sbjct: 25 QKIKVYVTKRRFGKLMTVVDGFDADLIDVKDLAKKLKDICACGGTVKKDSIELQGDHRRK 84
Query: 459 GQEVLIQGGVIADV 472
+E LI+ G D+
Sbjct: 85 AEETLIKMGFSKDM 98
>sp|A6VGZ2|SUI1_METM7 Protein translation factor SUI1 homolog OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0651
PE=3 SV=1
Length = 102
Score = 34.3 bits (77), Expect = 2.0, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 406 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVA----ELPG---KK 458
+ I++ +R+ K MT + G + L+D + LA +L+ AC TV EL G +K
Sbjct: 25 QKIKVYVTKRRFGKLMTVVDGFDADLIDVKDLAKKLKDICACGGTVKKDSIELQGDHRRK 84
Query: 459 GQEVLIQGGVIADV 472
+E LI+ G D+
Sbjct: 85 AEETLIKMGFSKDM 98
>sp|A9A9Q7|SUI1_METM6 Protein translation factor SUI1 homolog OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1267
PE=3 SV=1
Length = 102
Score = 34.3 bits (77), Expect = 2.0, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 406 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVA----ELPG---KK 458
+ I++ +R+ K MT + G + L+D + LA +L+ AC TV EL G +K
Sbjct: 25 QKIKVYVTKRRFGKLMTVVDGFDADLIDVKDLAKKLKDICACGGTVKKDSIELQGDHRRK 84
Query: 459 GQEVLIQGGVIADV 472
+E LI+ G D+
Sbjct: 85 AEETLIKMGFSKDM 98
>sp|A4FWB4|SUI1_METM5 Protein translation factor SUI1 homolog OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0172
PE=3 SV=1
Length = 102
Score = 34.3 bits (77), Expect = 2.0, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 406 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVA----ELPG---KK 458
+ I++ +R+ K MT + G + L+D + LA +L+ AC TV EL G +K
Sbjct: 25 QKIKVYVTKRRFGKLMTVVDGFDADLIDVKDLAKKLKDICACGGTVKKDSIELQGDHRRK 84
Query: 459 GQEVLIQGGVIADV 472
+E LI+ G D+
Sbjct: 85 AEETLIKMGFSKDM 98
>sp|A9A389|SUI1_NITMS Protein translation factor SUI1 homolog OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0622 PE=3 SV=1
Length = 102
Score = 34.3 bits (77), Expect = 2.4, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 408 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAE 453
I I E R+ KK T + GL+ L + E +A EL+ K+AC T E
Sbjct: 27 IIIRLETRRFKKKGTMIEGLDPKLNNLETVAKELKSKYACGGTAKE 72
>sp|Q9HME3|SUI1_HALSA Protein translation factor SUI1 homolog OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=VNG_2584C
PE=3 SV=1
Length = 97
Score = 34.3 bits (77), Expect = 2.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 406 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAE 453
+ I+I + R+ K++T + G + +D ++L+S+L+ KFAC TV +
Sbjct: 25 QQIEIRIDERRYGKEVTVIEGFDPKDVDLDSLSSDLKSKFACGGTVED 72
>sp|B0R868|SUI1_HALS3 Protein translation factor SUI1 homolog OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=OE_4626R PE=3 SV=1
Length = 97
Score = 34.3 bits (77), Expect = 2.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 406 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAE 453
+ I+I + R+ K++T + G + +D ++L+S+L+ KFAC TV +
Sbjct: 25 QQIEIRIDERRYGKEVTVIEGFDPKDVDLDSLSSDLKSKFACGGTVED 72
>sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana
GN=At1g54290 PE=3 SV=1
Length = 113
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 403 GALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEV 462
G + + I ++R G K +T + GL+ + L +L+K+F C+ TV + + GQ +
Sbjct: 26 GTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL-KDLKKEFCCNGTVVQ-DSELGQVI 83
Query: 463 LIQGGVIADVAKHLVEQFGIPKR 485
+QG +V+ LV Q G+ K+
Sbjct: 84 QLQGDQRKNVSTFLV-QAGLVKK 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,192,012
Number of Sequences: 539616
Number of extensions: 8020905
Number of successful extensions: 17997
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 17917
Number of HSP's gapped (non-prelim): 127
length of query: 496
length of database: 191,569,459
effective HSP length: 122
effective length of query: 374
effective length of database: 125,736,307
effective search space: 47025378818
effective search space used: 47025378818
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)