Query 010987
Match_columns 496
No_of_seqs 204 out of 1116
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 18:26:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ogh_A Eukaryotic translation 99.8 9.9E-21 3.4E-25 162.5 11.3 100 385-491 8-107 (108)
2 2xzm_F EIF1; ribosome, transla 99.8 1.3E-20 4.4E-25 159.6 9.9 83 405-490 16-99 (101)
3 2if1_A EIF1, SUI1; translation 99.8 3.6E-20 1.2E-24 162.4 7.5 103 384-490 21-124 (126)
4 1d1r_A Hypothetical 11.4 KD pr 99.7 3.7E-18 1.3E-22 147.4 4.7 79 405-491 30-110 (116)
5 3r90_A Malignant T cell-amplif 99.5 2E-15 6.8E-20 142.2 4.5 69 1-70 112-180 (188)
6 1q7h_A Conserved hypothetical 99.3 1.4E-12 4.9E-17 118.7 4.4 64 1-69 90-153 (153)
7 3d79_A PUA domain, putative un 99.3 2.4E-12 8.3E-17 120.3 5.0 65 1-69 114-178 (179)
8 2cx0_A Hypothetical protein AP 99.2 5.5E-12 1.9E-16 118.6 3.7 65 1-68 112-179 (187)
9 3zv0_C H/ACA ribonucleoprotein 98.6 4.7E-08 1.6E-12 91.5 6.5 64 1-69 95-163 (195)
10 2q07_A Uncharacterized protein 98.2 1E-06 3.5E-11 88.7 5.3 57 1-64 245-301 (306)
11 1v32_A AT5G08430, hypothetical 97.7 4.1E-05 1.4E-09 64.5 5.3 57 302-358 16-72 (101)
12 1uhr_A SWI/SNF related, matrix 97.5 7.1E-05 2.4E-09 62.2 4.2 54 299-358 11-64 (93)
13 1v31_A Hypothetical protein RA 97.4 8.6E-05 3E-09 61.7 3.4 54 299-358 11-64 (93)
14 3u28_A H/ACA ribonucleoprotein 94.4 0.056 1.9E-06 55.8 6.6 63 2-69 287-354 (400)
15 2p38_A Protein involved in rib 94.1 0.047 1.6E-06 49.8 4.8 41 15-64 124-164 (166)
16 1iq8_A Archaeosine tRNA-guanin 89.7 0.38 1.3E-05 52.2 6.1 33 28-61 550-582 (582)
17 2v1n_A KIN17, protein KIN homo 88.4 1.1 3.9E-05 37.8 6.8 82 171-260 16-97 (111)
18 2j5v_A Glutamate 5-kinase; pro 83.9 0.8 2.7E-05 46.8 4.4 41 1-45 296-336 (367)
19 2z5s_M MDM4 protein, zebrafish 83.0 0.82 2.8E-05 39.6 3.3 60 299-359 23-83 (140)
20 2d74_B Translation initiation 83.0 1.1 3.7E-05 40.0 4.2 60 404-474 31-94 (148)
21 1nee_A EIF-2-beta, probable tr 81.0 0.46 1.6E-05 41.9 1.1 60 404-474 29-92 (138)
22 1z1m_A Ubiquitin-protein ligas 80.6 1.5 5.2E-05 37.2 4.1 63 295-358 23-86 (119)
23 1ycq_A MDM2, MDM2; anti-oncoge 80.0 1.2 3.9E-05 37.3 3.1 62 296-358 8-70 (107)
24 1sqw_A Saccharomyces cerevisia 79.2 4.9 0.00017 37.1 7.5 49 13-62 123-171 (188)
25 2e9h_A EIF-5, eukaryotic trans 74.4 3.4 0.00012 37.1 4.8 66 404-474 24-93 (157)
26 1k8b_A EIF-2-beta, probable tr 71.0 2.2 7.5E-05 31.2 2.2 46 414-467 3-52 (52)
27 3dac_M MDM4 protein; MDMX, MDM 69.1 2.5 8.4E-05 36.4 2.4 62 297-359 22-84 (130)
28 3fea_A MDM4 protein; HDMX, HDM 67.3 2.1 7.2E-05 35.3 1.6 61 298-359 14-75 (100)
29 2axi_A Ubiquitin-protein ligas 66.1 1.5 5E-05 37.0 0.5 61 297-358 9-70 (115)
30 2aus_C Pseudouridine synthase; 53.7 23 0.00078 35.5 6.8 45 15-61 281-325 (334)
31 2g2k_A EIF-5, eukaryotic trans 53.2 4.8 0.00016 36.6 1.5 66 404-474 17-86 (170)
32 2apo_A Probable tRNA pseudouri 36.6 67 0.0023 32.4 7.1 47 14-62 299-345 (357)
33 1wn8_A Kalata B3/B6, oantr pro 32.2 26 0.0009 21.2 1.9 20 221-240 3-22 (26)
34 3cw2_K Translation initiation 31.4 5.1 0.00017 35.2 -1.9 59 405-473 30-92 (139)
35 3hyi_A Protein DUF199/WHIA; la 24.4 2.4E+02 0.0081 27.6 8.5 67 424-490 97-165 (295)
36 2fhm_A Probable acylphosphatas 20.9 3E+02 0.01 21.5 7.5 62 424-489 8-71 (91)
No 1
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.9e-21 Score=162.53 Aligned_cols=100 Identities=24% Similarity=0.442 Sum_probs=87.7
Q ss_pred cccccEEEecCCccccccCCcceEEEEEEEecCCCcceEEeCcCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEE
Q 010987 385 RMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLI 464 (496)
Q Consensus 385 ~~~~~~~i~~~~~~~~~kG~~~~I~I~~e~R~g~K~VT~V~gle~f~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~v 464 (496)
.|.||+.. ++ ..+|..++|+|++++|+|||.||+|+||+. ++|+++||++|+++||||+||.+.|+. +.+|+|
T Consensus 8 ~~dpf~~~--~~---~~~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~-~~dlk~lak~lKkk~acggsV~~~~~~-g~~I~i 80 (108)
T 2ogh_A 8 SFDPFADT--GD---DETATSNYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEM-GEIIQL 80 (108)
T ss_dssp CCCCCCCC--CC---CCCCCSCSEEEEEECCSSSCCEEEEECCCT-TSCHHHHHHHHHHHHCCCEEEECCTTS-SCEEEE
T ss_pred CCCccccc--cc---cccCCCCeEEEEEEEccCCceEEEEeCCCc-chhHHHHHHHHHHHhcCceEEecCCCC-ceEEEE
Confidence 45666655 22 226888999999999999999999999996 999999999999999999999998875 789999
Q ss_pred cCCcHHHHHHHHHHhcCCCCccEEEcc
Q 010987 465 QGGVIADVAKHLVEQFGIPKRYIEVLD 491 (496)
Q Consensus 465 QG~~~~~v~~~L~~~~gip~~~I~~~~ 491 (496)
||||++.|.++|.++..+|++||.+..
T Consensus 81 QGD~r~~v~~~L~~~g~~~~~~I~vhg 107 (108)
T 2ogh_A 81 QGDQRAKVCEFMISQLGLQKKNIKIHG 107 (108)
T ss_dssp ESSCHHHHHHHHHHHHTSCCSCEEECC
T ss_pred cCCHHHHHHHHHHHcCCCCHHHEEEcC
Confidence 999999999999887666999998753
No 2
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=99.83 E-value=1.3e-20 Score=159.65 Aligned_cols=83 Identities=24% Similarity=0.363 Sum_probs=77.5
Q ss_pred cceEEEEEEEecCCCcceEEeCcCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCC-C
Q 010987 405 LKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGI-P 483 (496)
Q Consensus 405 ~~~I~I~~e~R~g~K~VT~V~gle~f~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~~L~~~~gi-p 483 (496)
-++|+|++++|+|||.||+|+||+ |++|+++||++|+++||||+||.+.|+. +.+|+|||||++.|.++|.++ |+ |
T Consensus 16 ~~~v~I~~~~R~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~acggsV~~~~~~-g~~I~iQGD~r~~v~~~L~~~-G~~~ 92 (101)
T 2xzm_F 16 QTHIHIRVEQRRGRKCFTTVEGIP-PEFDYEKIMKYWKKWLSCNATIVEEDEG-KKVIKLNGDHRNQIQQFLSEE-GIAA 92 (101)
T ss_dssp SCCEEEEEEEEETTEEEEEEECCC-TTSCTHHHHHHHHHHHTSCCCEEECSTT-CEEEEEESCCHHHHHHHHHHH-SSSC
T ss_pred CCeEEEEEEeccCCccEEEEecCC-CchhHHHHHHHHHHHhcCCeEEecCCCC-ceEEEEeCcHHHHHHHHHHHc-CCCC
Confidence 468999999999999999999999 9999999999999999999999988774 689999999999999999875 88 9
Q ss_pred CccEEEc
Q 010987 484 KRYIEVL 490 (496)
Q Consensus 484 ~~~I~~~ 490 (496)
+++|.+.
T Consensus 93 ~~~I~vh 99 (101)
T 2xzm_F 93 VDNITIH 99 (101)
T ss_dssp TTTEEEC
T ss_pred HHHEEEc
Confidence 9999875
No 3
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=99.80 E-value=3.6e-20 Score=162.36 Aligned_cols=103 Identities=28% Similarity=0.481 Sum_probs=88.4
Q ss_pred HcccccEEEecCCccccccCCcceEEEEEEEecCCCcceEEeCcCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEE
Q 010987 384 NRMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVL 463 (496)
Q Consensus 384 ~~~~~~~~i~~~~~~~~~kG~~~~I~I~~e~R~g~K~VT~V~gle~f~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~ 463 (496)
..|.||+....++.. ...|..++|+|++++|+|||.||+|+||+. ++|+++||++|+++||||+||.+.|+. +.+|+
T Consensus 21 ~~fdpfa~~~~~~~~-~~~g~~~~V~Ir~~~R~grK~VT~V~GL~~-~~dlk~laK~LKkk~acgGtVk~~~e~-g~~I~ 97 (126)
T 2if1_A 21 HSFDPFADASKGDDL-LPAGTEDYIHIRIQQRNGRKTLTTVQGIAD-DYDKKKLVKAFKKKFACNGTVIEHPEY-GEVIQ 97 (126)
T ss_dssp CCCCTTSSCCCCSSC-CSCSCTTCEECCCCCSSSSCCBCEEBSCCT-TSCHHHHHTTHHHHTCCCEEEECCTTT-SSEEE
T ss_pred CCCCchhhhcccccc-ccCCCCCeEEEEEEeecCCccEEEEeCCCC-chhHHHHHHHHHHHhcCCeEEecCCCC-ccEEE
Confidence 357778776544322 234788999999999999999999999998 999999999999999999999988764 68999
Q ss_pred EcCCcHHHHHHHHHHhcCC-CCccEEEc
Q 010987 464 IQGGVIADVAKHLVEQFGI-PKRYIEVL 490 (496)
Q Consensus 464 vQG~~~~~v~~~L~~~~gi-p~~~I~~~ 490 (496)
|||||++.|.++|.++ |+ +++||.+.
T Consensus 98 IQGD~r~~I~~~L~~~-G~~~~~~I~vh 124 (126)
T 2if1_A 98 LQGDQRKNICQFLVEI-GLAKDDQLKVH 124 (126)
T ss_dssp ESBCCHHHHHHHHHHH-TSSCTTTEECC
T ss_pred EcCCHHHHHHHHHHHc-CCCChhhEEee
Confidence 9999999999999775 88 78899874
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=99.71 E-value=3.7e-18 Score=147.43 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=72.1
Q ss_pred cceEEEEEEEecCC--CcceEEeCcCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCC
Q 010987 405 LKTIQIVTERRQGN--KKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGI 482 (496)
Q Consensus 405 ~~~I~I~~e~R~g~--K~VT~V~gle~f~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~~L~~~~gi 482 (496)
..+|+|+++ |+|| |.||+|+||+.|++|+++||++|+++||||+||. +.+|+|||||++.|.+||.+ .|+
T Consensus 30 ~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtVk------~~~IeiQGD~r~~i~~~L~~-~G~ 101 (116)
T 1d1r_A 30 DGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVK------DGVIEIQGDKRDLLKSLLEA-KGM 101 (116)
T ss_dssp CCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCC------SSCEEECSCCHHHHHHHHHH-HTC
T ss_pred CCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEEc------CCEEEEeCcHHHHHHHHHHH-cCC
Confidence 468999998 7666 9999999999999999999999999999999993 57999999999999999976 699
Q ss_pred CCccEEEcc
Q 010987 483 PKRYIEVLD 491 (496)
Q Consensus 483 p~~~I~~~~ 491 (496)
+.+||+..+
T Consensus 102 ~vk~i~~~~ 110 (116)
T 1d1r_A 102 KVKLAGGLE 110 (116)
T ss_dssp EECCCCCCC
T ss_pred Ccceecccc
Confidence 999998765
No 5
>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}
Probab=99.54 E-value=2e-15 Score=142.17 Aligned_cols=69 Identities=26% Similarity=0.368 Sum_probs=63.5
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecccccccCCC
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEG 70 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD~LW~~g~~ 70 (496)
|+|||+.+.+.+++|++|++|+|...+++.|+|||+++||+++|.. ..||+||+++|++||+||++++.
T Consensus 112 m~PGv~~~~~~~~~i~~Gd~V~V~~~~~~~~vAVG~a~mss~e~~~-~~kG~aV~v~H~~~D~LW~~~~~ 180 (188)
T 3r90_A 112 MCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEK-VNKGIGIENIHYLNDGLWHMKTY 180 (188)
T ss_dssp ETHHHHSTTCBCCCCCTTCEEEEEETTCSSCSEEEEESSCHHHHHH-HCCSEEEEEEEETTSHHHHHCBS
T ss_pred ccCeEEccCCCcccccCCCEEEEEECCCCcEEEEEEEEeCHHHHhh-cCCcEEEEEEEEECchhhhcCCc
Confidence 8999998776667899999999999989999999999999999964 68999999999999999999874
No 6
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=99.28 E-value=1.4e-12 Score=118.75 Aligned_cols=64 Identities=36% Similarity=0.392 Sum_probs=57.4
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecccccccCC
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVE 69 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD~LW~~g~ 69 (496)
|.|||+... ++|++|++|+|... +..|+|+|++.||+++|. .+.+|+||+++|++||+||++++
T Consensus 90 l~~GV~~~~---~~~~~gd~V~V~~~-~g~~ia~G~~~~ss~e~~-~~~~G~~v~v~h~~~D~lw~~~~ 153 (153)
T 1q7h_A 90 FAPGIVSMD---DSIRKGDMIFVKSS-KGYFIAVGMAEMDAGEVM-ATKRGKAARIIHFPGDELIRAFP 153 (153)
T ss_dssp EGGGEEEEC---TTCCTTCEEEEEET-TSCEEEEEEESSCHHHHH-HHCCSEEEEEEECTTSHHHHHCC
T ss_pred CccccCccc---CceeCCCEEEEEEC-CCCEEEEEEEecCHHHHH-hcCCCeEEEEEEEcCCEEEEecC
Confidence 789998643 58999999999988 788999999999999995 47899999999999999999874
No 7
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}
Probab=99.26 E-value=2.4e-12 Score=120.31 Aligned_cols=65 Identities=29% Similarity=0.390 Sum_probs=58.6
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecccccccCC
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVE 69 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD~LW~~g~ 69 (496)
|+|||+... ++|.+|++|+|...++..++|||++.||+++|. .+.+|+||+++|++||+||.++.
T Consensus 114 ~~~GV~~~~---g~f~~Gd~V~v~~~~~g~~iavG~~~~ss~e~~-~~~kG~av~~~H~~~D~Lw~~~~ 178 (179)
T 3d79_A 114 MAPGIVDAD---EGIKEGDFVFVVEEKYGRPLAIGIALMSGKVMK-EKNRGKAVKVIHHARDKIWEVTA 178 (179)
T ss_dssp EGGGEEEEC---TTCCTTCEEEEEETTTCCEEEEEEESSCHHHHH-HCSSSEEEEEEEETTSHHHHHHC
T ss_pred CCCcEEEcc---CCccCCCEEEEEECCCCeEEEEEEEEcCHHHHH-hcCCceEEEEEEEeCCEEEEeec
Confidence 789998643 589999999999988889999999999999995 58999999999999999998753
No 8
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A
Probab=99.19 E-value=5.5e-12 Score=118.65 Aligned_cols=65 Identities=29% Similarity=0.457 Sum_probs=58.0
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHH-H--hcCCcccEEEEEEeecccccccC
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEA-L--KAGLRGKALRITHYYRDLLWGSV 68 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~-~--~~~~kGkav~ilH~~gD~LW~~g 68 (496)
|+|||+... ++|.+|++|+|...+++.++|||.+.||+++| . ..+.+|+||+++|++||+||.++
T Consensus 112 l~~GV~~~~---g~f~~Gd~V~I~~~~~g~~iA~G~~~~ss~ei~~~~~~~~kG~av~v~H~~gD~Lw~~~ 179 (187)
T 2cx0_A 112 MIPGVVGVE---GSFTRGDVVAALYHETRTPVMVGVAEVDSSALEKLYREKARGRAVRRVHRLGDALWELA 179 (187)
T ss_dssp EGGGEEEEE---ECCCTTCEEEEEETTTTEEEEEEEESSCHHHHHHHHHHTCCSEEEEEEEETTSHHHHHH
T ss_pred CCCccEeCC---CCcCCCCEEEEEECCCCeEEEEEEEecCHHHHhHHHhccCCceEEEEEEEcCCeEEhhh
Confidence 789998643 58999999999998788999999999999998 2 35899999999999999999874
No 9
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=98.60 E-value=4.7e-08 Score=91.55 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=56.3
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecc-----cccccCC
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRD-----LLWGSVE 69 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD-----~LW~~g~ 69 (496)
|.|||+... ++|.+|++|+|... +..++|+|++.||+++|.. ..+|+||++.|.+.| .+|.+|+
T Consensus 95 l~pGV~~v~---g~F~~GD~V~V~~~-~G~~IAvG~a~~sS~Ei~~-~~kG~aVkv~rVimd~~~Yp~~W~~gp 163 (195)
T 3zv0_C 95 MIPGLLRYE---EGIELYDEIVLITT-KGEAIAVAIAQMSTVDLAS-CDHGVVASVKRCIMERDLYPRRWGLGP 163 (195)
T ss_dssp EGGGEEEEE---TTCCTTCEEEEECT-TCCEEEEEEESSCHHHHHH-CSSSEEEEEEEECBCTTSSCCCCSSCC
T ss_pred cCCCcEecC---CCcCCCCEEEEEcC-CCCEEEEEEEcCCHHHHhh-cCCcEEEEEEEEEeCCCCcCcccccCc
Confidence 679998643 58999999999976 4569999999999999954 679999999999999 9999996
No 10
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=98.19 E-value=1e-06 Score=88.66 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=45.8
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecccc
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLL 64 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD~L 64 (496)
|+|||+... +++++|+.|+| . +..++|||++.||+++| ....+|+||++.|+++|+-
T Consensus 245 ~~pGv~~~~---~~i~~gd~V~V--~-~g~~vavG~a~ms~~em-~~~~kG~aV~v~~~~~~~~ 301 (306)
T 2q07_A 245 FAGGVLRAD---EKIRPNDVVVF--H-NSRIFGVGLAAMSGKEM-AGSEKGIAINVKRKFSEGH 301 (306)
T ss_dssp EGGGEEEEC---TTCCTTCEEEE--E-CSSCEEEEEESSCHHHH-SCC--CEEEEEEEEEC---
T ss_pred eCCeeEeCC---CCcCCCCEEEE--E-CCEEEEEEEEeeCHHHH-hhcCCceEEEEEEEccCCc
Confidence 789999654 47999999999 3 36899999999999999 4578999999999999974
No 11
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=97.68 E-value=4.1e-05 Score=64.52 Aligned_cols=57 Identities=30% Similarity=0.416 Sum_probs=49.2
Q ss_pred cCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010987 302 PSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 358 (496)
Q Consensus 302 p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 358 (496)
|+..+..|+..+|.+....+|+++|-..|++||+.|||.||.||+.|.-|+-|..++
T Consensus 16 ~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lF 72 (101)
T 1v32_A 16 GSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLF 72 (101)
T ss_dssp SCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHT
T ss_pred CCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHH
Confidence 344567777666876667899999999999999999999999999999999999865
No 12
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=97.50 E-value=7.1e-05 Score=62.19 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=47.2
Q ss_pred EeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010987 299 VYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 358 (496)
Q Consensus 299 lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 358 (496)
-|+++..+..|+. . .-.|++||-..|++||+.|||.++.||+.|..|+.|..++
T Consensus 11 ~~~lS~~La~~lG---~---~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lf 64 (93)
T 1uhr_A 11 QFKLDPRLARLLG---I---HTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIF 64 (93)
T ss_dssp EEEECTTHHHHTC---C---SEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHT
T ss_pred ccCcCHHHHHHHC---C---CccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHh
Confidence 5778887777763 2 3579999999999999999999999999999999999865
No 13
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=97.39 E-value=8.6e-05 Score=61.65 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=46.3
Q ss_pred EeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010987 299 VYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 358 (496)
Q Consensus 299 lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 358 (496)
.|+++..+..|+ |. .-.|++||-..|++||+.|||.++.||+.|..|+.|..++
T Consensus 11 ~~~lS~~La~~l---G~---~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lf 64 (93)
T 1v31_A 11 KFKLSTALMDVL---GI---EVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF 64 (93)
T ss_dssp CEECCHHHHHHS---CC---SEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHS
T ss_pred ccccCHHHHHHH---CC---CccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHh
Confidence 477777777775 32 2579999999999999999999999999999999999865
No 14
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=94.35 E-value=0.056 Score=55.81 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=47.2
Q ss_pred CCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecc-----cccccCC
Q 010987 2 FPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRD-----LLWGSVE 69 (496)
Q Consensus 2 ~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD-----~LW~~g~ 69 (496)
+||++... ..+..|+.|+|... ++.++|||++.|++++|. ...+|++|++-..+.| ..|-+|+
T Consensus 287 ~pgVl~~~---~~i~~gd~VvVvt~-kGelLAIG~A~mss~em~-~~~~G~vvk~~rV~m~~~~yp~~w~~~~ 354 (400)
T 3u28_A 287 IPGLLRYE---EGIELYDEIVLITT-KGEAIAVAIAQMSTVDLA-SCDHGVVASVKRCIMERDLYPRRWGLGP 354 (400)
T ss_dssp GGGEEEEC---TTCCTTCEEEEECT-TCCEEEEEEESSCHHHHH-HCSSSEEEEEEEECSCTTSSCCCC----
T ss_pred cCcccccc---ccCCCCCEEEEEeC-CCcEEEEEEEEeCHHHHh-hcCCcEEEEEEEEeecCCCCccccCcCh
Confidence 46665321 35678999988865 678999999999999995 4789999999999987 4688885
No 15
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=94.09 E-value=0.047 Score=49.83 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=33.1
Q ss_pred CCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecccc
Q 010987 15 FLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLL 64 (496)
Q Consensus 15 ~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD~L 64 (496)
++.|+.|+|... +..|+|+|++++| .+|++|..+|..|=.|
T Consensus 124 ~~~~~~VvV~~~-~~~pLG~G~a~~s--------~~gkvv~n~~dvGeYL 164 (166)
T 2p38_A 124 WQGSKRVVVLND-LGDIIGIGLINPK--------SDRRFIKNLKDVGEFL 164 (166)
T ss_dssp CSSCSEEEEECT-TSCEEEEEEECTT--------CSTTSEEEEEC-----
T ss_pred ecCCCEEEEEEC-CCcEEEEEEEEEC--------CCCEEEEEcccceeee
Confidence 478999999977 8889999999998 6999999999999665
No 16
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=89.66 E-value=0.38 Score=52.20 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=29.6
Q ss_pred CCCeEEEEEeecChHHHHhcCCcccEEEEEEeec
Q 010987 28 NPAPIAVGSTTMSSTEALKAGLRGKALRITHYYR 61 (496)
Q Consensus 28 ~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~g 61 (496)
++.++|||.+.||+++|. ...||+||++.|++.
T Consensus 550 ~g~~ia~G~a~~ss~ei~-~~~kG~aV~v~~~~~ 582 (582)
T 1iq8_A 550 NDELLATGQALLSGREMI-VFQYGRAVKVRKGVE 582 (582)
T ss_dssp TCCEEEEEEESSCHHHHH-HCCSSEEEEEEEECC
T ss_pred CCCEEEEEEEeeCHHHHH-hcCCceEEEEEeccC
Confidence 678999999999999995 478999999999863
No 17
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=88.44 E-value=1.1 Score=37.77 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHHHhhhcCCCCCCCCChhhhhhhcccCCCCCCCceeeeccccccHHHHHHHHhhCCceEEeeccCCCe
Q 010987 171 TEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLISVKEDKYKKE 250 (496)
Q Consensus 171 ~e~mD~ll~~all~al~~~~~~~~LPi~~S~F~s~~ilp~~P~~~~ldiKKSS~KK~skFLk~m~K~gll~~Ke~~~~g~ 250 (496)
.++...-|+..||.-|+.. ...=.+.+..||..||-- + .-|=|--|.|..|+.|.++|-++|+.++.|. ..-
T Consensus 16 i~~fS~eF~~~Fl~lLr~~--~g~krV~aN~vYnEyI~d-k---~HiHMNaT~W~tLT~Fvk~Lgr~G~c~V~et--ekG 87 (111)
T 2v1n_A 16 MDYFSEEFRNDFLELLRRR--FGTKRVHNNIVYNEYISH-R---EHIHMNATQWETLTDFTKWLGREGLCKVDET--PKG 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TSSCEEEHHHHHHHHTTS-S---CCCCGGGSSCSSHHHHHHHHTTTTSEEEEEE--TTE
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCcEeehhHHHHHHhcc-c---ccccccccccccHHHHHHHhccCCeEEEecC--CCc
Confidence 4566677899999999863 345678999999999932 2 2567778999999999999999999999974 445
Q ss_pred eEEEEeeCCC
Q 010987 251 SMLFSVNRGH 260 (496)
Q Consensus 251 ~~I~~vn~~h 260 (496)
..|.=|+++-
T Consensus 88 ~~I~yId~~p 97 (111)
T 2v1n_A 88 WYIQYIDRDP 97 (111)
T ss_dssp EEEEECCSSH
T ss_pred eEEEeecCCH
Confidence 6888787753
No 18
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=83.88 E-value=0.8 Score=46.80 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=34.9
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHH
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEAL 45 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~ 45 (496)
|.|||+.-. .+|.+|++|.|... +..++|+|.+.+|++++.
T Consensus 296 l~~Gi~~v~---g~F~~gd~V~i~~~-~g~~ia~G~~~y~s~e~~ 336 (367)
T 2j5v_A 296 LPKGIKSVT---GNFSRGEVIRICNL-EGRDIAHGVSRYNSDALR 336 (367)
T ss_dssp CGGGEEEEE---SCCCTTCEEEEEET-TCCEEEEEECSSCHHHHH
T ss_pred CCcccEEEE---CcccCCCEEEEECC-CCCEEEEEEecCCHHHHH
Confidence 568887543 48999999999987 678999999999999985
No 19
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=83.02 E-value=0.82 Score=39.59 Aligned_cols=60 Identities=23% Similarity=0.312 Sum_probs=51.3
Q ss_pred EeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHHh
Q 010987 299 VYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDALF 359 (496)
Q Consensus 299 lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l~ 359 (496)
+.+|...+..+++.+|.. ++.||..||...|-+||-.+.|-|++++.+|.= ++.|..++.
T Consensus 23 ~VrPk~~LLkiLq~aGA~-~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~G 83 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQ-EEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLE 83 (140)
T ss_dssp CBEECHHHHHHHHHTTCC-CSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT
T ss_pred eecCcHHHHHHHHHhCcc-cceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccC
Confidence 788888899999999975 478999999999999999999999999988854 567776553
No 20
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=83.00 E-value=1.1 Score=40.01 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=45.1
Q ss_pred CcceEEEEEEEecCCCcceEEeCcCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHH
Q 010987 404 ALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 474 (496)
Q Consensus 404 ~~~~I~I~~e~R~g~K~VT~V~gle~f----~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~ 474 (496)
..|++++.++ |+| |+|.||... +=+++-+.+.|..-++++|++. +....|+|.+...-.+
T Consensus 31 kmP~~~v~~e---GkK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id------~~rlii~G~~~~~~i~ 94 (148)
T 2d74_B 31 EVPGALVTIE---GNK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLE------GRRVVLQGRFTPYLIA 94 (148)
T ss_dssp CCCCCCEEEE---TTE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE------TTEEEESSCCCHHHHH
T ss_pred ecCCCeEEEe---cCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec------CCEEEEEeeeCHHHHH
Confidence 3556665544 654 999998644 4578889999999999999995 3589999997655444
No 21
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=81.00 E-value=0.46 Score=41.92 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=44.7
Q ss_pred CcceEEEEEEEecCCCcceEEeCcCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHH
Q 010987 404 ALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 474 (496)
Q Consensus 404 ~~~~I~I~~e~R~g~K~VT~V~gle~f----~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~ 474 (496)
..|++++.++ |+| |++.||... +=+++-+.+.|..-+++++++. +....|+|.|...-.+
T Consensus 29 ~mp~~~v~~e---G~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id------~~rlii~G~~~~~~i~ 92 (138)
T 1nee_A 29 EVPKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE------GGRAILQGKFTHFLIN 92 (138)
T ss_dssp CCSCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB------TTTEEEESSCSSSHHH
T ss_pred ecCCCeEEEE---CCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec------CCEEEEEeeeCHHHHH
Confidence 3455555543 776 999999644 4578899999999999999995 3578999997554333
No 22
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=80.58 E-value=1.5 Score=37.18 Aligned_cols=63 Identities=25% Similarity=0.330 Sum_probs=53.2
Q ss_pred EEEEEeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHH
Q 010987 295 EVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDAL 358 (496)
Q Consensus 295 ~i~~lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l 358 (496)
+.+.+-+|...+..+++.+|... ..||..||...|-+||-.+.|-|++++.+|.= ++.|..++
T Consensus 23 Eqe~~VrPk~~LLkiLq~aGA~~-~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~ 86 (119)
T 1z1m_A 23 EQETLVRPKPLLLKLLKSVGAQK-DTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLF 86 (119)
T ss_dssp SSCCCCCCSTTSHHHHHHHTCCC-SCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHS
T ss_pred hccccccccHHHHHHHHHhcccc-ceeechheeehhhhhhhHhhhcccccCcEEeeCCccccccc
Confidence 34567899999999999999765 88999999999999999999999999988854 45666644
No 23
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=80.04 E-value=1.2 Score=37.29 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=51.0
Q ss_pred EEEEeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHH
Q 010987 296 VTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDAL 358 (496)
Q Consensus 296 i~~lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l 358 (496)
++.+-+|...+..++..+|... ..||..|+.-.|-+||-.+.|-|++++.+|.= ++.|..++
T Consensus 8 ~e~~VrPk~~LLklL~~~GA~~-~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~ 70 (107)
T 1ycq_A 8 QEKLVQPTPLLLSLLKSAGAQK-ETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELF 70 (107)
T ss_dssp -CCCBEECHHHHHHHHHTTCCC-SCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHH
T ss_pred cCcccCccHHHHHHHHHhcccc-ceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCccccccc
Confidence 3446778888888999988755 88999999999999999999999999988854 55677655
No 24
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=79.24 E-value=4.9 Score=37.10 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=38.7
Q ss_pred CCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecc
Q 010987 13 PSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRD 62 (496)
Q Consensus 13 ~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD 62 (496)
+++++|+-|.|... +..|+|+|+++.|..++......|..|...==.|=
T Consensus 123 e~i~~~~~VvV~n~-~d~pLG~G~a~~s~~e~~~~~~~~~vv~~q~D~Ge 171 (188)
T 1sqw_A 123 ENTSQYQGVVVYSM-ADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGE 171 (188)
T ss_dssp TTCCTTCEEEEEET-TCCEEEEEEESSCHHHHHHSCTTSEEEEEEEEGGG
T ss_pred CCCCCCCEEEEEeC-CCCEEEEEEeecCHHHHHhcCCCcEEEEEccccee
Confidence 57889999999976 56899999999999999776777776665544443
No 25
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.41 E-value=3.4 Score=37.13 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=49.6
Q ss_pred CcceEEEEEEEecCCCcceEEeCcCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHH
Q 010987 404 ALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 474 (496)
Q Consensus 404 ~~~~I~I~~e~R~g~K~VT~V~gle~f----~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~ 474 (496)
..|++++.++-+ ||=.=|+|.||... +=+++-+.+.|...+++++++.+ ++....|+|.|.....+
T Consensus 24 kmP~~~v~~eG~-gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~----~~~rlii~G~~~~~~i~ 93 (157)
T 2e9h_A 24 KMPRLIAKVEGK-GNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDV----KNDRYIVNGSHEANKLQ 93 (157)
T ss_dssp EEECCCEEECSS-SSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEET----TTTEEEEEBCCCHHHHH
T ss_pred ecCCCeEEEecc-CCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC----CCCEEEEEeeeCHHHHH
Confidence 466777766655 44567999998543 45788999999999999999953 24689999997665444
No 26
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=71.01 E-value=2.2 Score=31.16 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=36.5
Q ss_pred EecCCCcceEEeCcCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCC
Q 010987 414 RRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 467 (496)
Q Consensus 414 ~R~g~K~VT~V~gle~f----~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~ 467 (496)
.|-|+| |++.||... .=+|+-+.+.|.+.+++++++. +....|+|.
T Consensus 3 ~~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id------~~rlii~G~ 52 (52)
T 1k8b_A 3 LIEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE------GGRLILQRR 52 (52)
T ss_dssp EEETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE------TTEEEEECC
T ss_pred EEEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec------CCEEEEeCC
Confidence 456887 999999644 3478899999999999999995 247778773
No 27
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=69.08 E-value=2.5 Score=36.42 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=50.4
Q ss_pred EEEeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHHh
Q 010987 297 TEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDALF 359 (496)
Q Consensus 297 ~~lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l~ 359 (496)
+.+-+|...+..++..+|.. ++.||..|+...|.+||-.+.|-++.+..+|.= ++.|...+.
T Consensus 22 ~~~Vrpk~~lL~iLq~aGA~-~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llG 84 (130)
T 3dac_M 22 GTQVHPRAPLLQILKVAGAQ-EEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLE 84 (130)
T ss_dssp -CEEEECHHHHHHHHHTTCC-CSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT
T ss_pred ceecCCcHHHHHHHHHhccC-cceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccC
Confidence 34678888888999998875 578999999999999999999999999888754 456666543
No 28
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=67.32 E-value=2.1 Score=35.33 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=49.4
Q ss_pred EEeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHHh
Q 010987 298 EVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDALF 359 (496)
Q Consensus 298 ~lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l~ 359 (496)
.+-+|...+..++..+|.. ++.||..|+...|-+||-.+.|-++.+..+|.= ++.|...+.
T Consensus 14 ~~Vrpk~~lL~iLq~aGA~-~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G 75 (100)
T 3fea_A 14 NQVRPKLPLLKILHAAGAQ-GEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLG 75 (100)
T ss_dssp -CBEECHHHHHHHHHTTCC-SSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHT
T ss_pred cccCCcHHHHHHHHHhccC-cceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccC
Confidence 3577887888899998874 578999999999999999999999998887754 456666543
No 29
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=66.08 E-value=1.5 Score=37.03 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=51.0
Q ss_pred EEEeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHH
Q 010987 297 TEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDAL 358 (496)
Q Consensus 297 ~~lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l 358 (496)
+.+-+|...+..++..+|... ..||..|+.-.|-+||-.+.|-|++++.+|.= ++.|..++
T Consensus 9 e~~VrPk~~LLklLq~~GA~~-~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~ 70 (115)
T 2axi_A 9 ETLVRPKPLLLKLLKSVGAQK-DTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLF 70 (115)
T ss_dssp CCEEEECHHHHHHHHHTTCCC-SCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHH
T ss_pred ccccCccHHHHHHHHHhcccc-ceeechhheehhhhhhhHhhhcccccCcEEeeCCccccccc
Confidence 446788888889999998755 88999999999999999999999999888754 55677655
No 30
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=53.72 E-value=23 Score=35.51 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=36.8
Q ss_pred CCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeec
Q 010987 15 FLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYR 61 (496)
Q Consensus 15 ~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~g 61 (496)
+..|+.|.|... +...+|||.+.|++.+|. ...+|.+++..+.+.
T Consensus 281 i~~gd~V~V~~~-~G~fLAIGe~~~s~~e~~-~~~~G~~vKp~rV~~ 325 (334)
T 2aus_C 281 IKKGDLVAIMTL-KDELVALGKAMMSTQEMI-ERSKGIAVDVEKVFM 325 (334)
T ss_dssp CCTTCEEEEEET-TCCEEEEEEESSCHHHHH-HCSSSEEEEEEEECS
T ss_pred cCCCCEEEEEec-CCeEEEEEEeccCchhcc-ccCCCeEEEEEEEee
Confidence 556887887754 457899999999999995 478999999999883
No 31
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=53.21 E-value=4.8 Score=36.59 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=48.0
Q ss_pred CcceEEEEEEEecCCCcceEEeCcCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHH
Q 010987 404 ALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 474 (496)
Q Consensus 404 ~~~~I~I~~e~R~g~K~VT~V~gle~f----~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~ 474 (496)
..|++++.+|-+ ||=.-|+|.||... +=+++-+.+.|..-+++++++.. ++....|+|.|.....+
T Consensus 17 kmP~~~v~~EG~-gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~----~~~rliinG~~~~~~i~ 86 (170)
T 2g2k_A 17 KMPRLIAKVEGK-GNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDV----KNDRYIVNGSHEANKLQ 86 (170)
T ss_dssp CCCCCCCEEESC-TTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECT----TTCCEEEEBCCCHHHHH
T ss_pred cCCCCeEEEecc-CCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecC----CCCEEEEEeeeCHHHHH
Confidence 567777777766 44466888888543 34566778889999999999942 24689999997765554
No 32
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=36.64 E-value=67 Score=32.42 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=36.8
Q ss_pred CCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecc
Q 010987 14 SFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRD 62 (496)
Q Consensus 14 ~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD 62 (496)
.+..|+.|+|... +..++|||.+.|++.+|. ...+|.+++....+.+
T Consensus 299 ~i~~gd~V~v~~~-~G~flAIGea~~~~~ei~-~~~kG~vvKp~rVf~~ 345 (357)
T 2apo_A 299 GIGKGETVLVETL-KGEAVAVGKALMNTKEIL-NADKGVAVDVERVYMD 345 (357)
T ss_dssp TCCTTCEEEEECT-TSCEEEEEEESSCHHHHH-HCSSSEEEEEEEECSC
T ss_pred ccCCCCeEEEEcC-CCEEEEEEEecccccccc-ccCCCeEEEEEEEeeC
Confidence 3456788887744 457999999999999995 4778988888888743
No 33
>1wn8_A Kalata B3/B6, oantr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=32.22 E-value=26 Score=21.23 Aligned_cols=20 Identities=40% Similarity=0.446 Sum_probs=16.5
Q ss_pred ccccccHHHHHHHHhhCCce
Q 010987 221 KSSHKKLTKWLQAKSSAGLI 240 (496)
Q Consensus 221 KSS~KK~skFLk~m~K~gll 240 (496)
|||---+.-|||.|+=.||=
T Consensus 3 ktsett~~~flkemqlkglp 22 (26)
T 1wn8_A 3 KSSETTLTMFLKEMQLKGLP 22 (26)
T ss_dssp STTTHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHHHhcCCC
Confidence 67777889999999988863
No 34
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=31.37 E-value=5.1 Score=35.23 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=43.3
Q ss_pred cceEEEEEEEecCCCcceEEeCcCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHH
Q 010987 405 LKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVA 473 (496)
Q Consensus 405 ~~~I~I~~e~R~g~K~VT~V~gle~f----~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~ 473 (496)
.|++++ +|-|+| |++.||... +=+++-+.+.|..-+++++++.. +....|+|.|...-.
T Consensus 30 mp~~~v---~~eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~-----~~rlii~G~~~~~~i 92 (139)
T 3cw2_K 30 LPNMII---LNIGNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDD-----KGELVIQGKFSSQVI 92 (139)
T ss_dssp CCCCCC---CCCSSS--CCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSS-----SCCCTTTCSCCSCCS
T ss_pred cCCCeE---EEECCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECC-----CCeEEEEeeeCHHHH
Confidence 444444 345776 999999765 33688899999999999999943 357888998765433
No 35
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=24.36 E-value=2.4e+02 Score=27.60 Aligned_cols=67 Identities=19% Similarity=0.083 Sum_probs=46.8
Q ss_pred EeCcCCCCC-CHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCC-cHHHHHHHHHHhcCCCCccEEEc
Q 010987 424 LSGLETFLM-DPEALASELQKKFACSTTVAELPGKKGQEVLIQGG-VIADVAKHLVEQFGIPKRYIEVL 490 (496)
Q Consensus 424 V~gle~f~i-d~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~-~~~~v~~~L~~~~gip~~~I~~~ 490 (496)
+.|+...-+ +.......||=.|=|+|||.+....--.||...+. +...+.++|...+|++.+.++..
T Consensus 97 ~~~i~~~i~~~~~~~~A~lRGaFLa~GSv~dP~~~YHLEi~~~~~e~a~~l~~ll~~~~~l~ak~~~Rk 165 (295)
T 3hyi_A 97 ESFMVIEPFFDVALFVSFLRGLFLSGGSMTNPRYHYHLEINLFEEETLALTRKSLKDFFNINAGIIELR 165 (295)
T ss_dssp GGGGSCCTTSSHHHHHHHHHHHHHHHEEECCTTTCCCEEEEESCHHHHHHHHHHHHHHHCCCCEEEECS
T ss_pred cccCcHHHhcChHHHHHHHHHHHhcCeecCCCCCceeEEEeeCcHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 344544333 35566789999999999997654322378888876 67777787735699999887643
No 36
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=20.93 E-value=3e+02 Score=21.51 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=43.3
Q ss_pred EeCcCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCc--HHHHHHHHHHhcCCCCccEEE
Q 010987 424 LSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGV--IADVAKHLVEQFGIPKRYIEV 489 (496)
Q Consensus 424 V~gle~f~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~--~~~v~~~L~~~~gip~~~I~~ 489 (496)
|+|.= -|+-...++..+.++++-.+.|.-.+.+ ..+|.+||+. .+...+.|. .|-|...|+-
T Consensus 8 v~G~V-QGVGFR~~v~~~A~~lgl~G~V~N~~dG-~Vei~~eG~~~~i~~f~~~l~--~~~p~a~V~~ 71 (91)
T 2fhm_A 8 VDGRV-QGVGFRYFVQMEADKRKLAGWVKNRDDG-RVEILAEGPENALQSFVEAVK--NGSPFSKVTD 71 (91)
T ss_dssp EEEEC-CSSCHHHHHHHHHHHTTCEEEEEECTTS-CEEEEEEECHHHHHHHHHHHH--TTCSSSEEEE
T ss_pred EEEeE-CCcCHHHHHHHHHHHcCCeEEEEECCCC-cEEEEEEeCHHHHHHHHHHHH--hCCCccEEEE
Confidence 55543 2777888999999999999999766542 2899999985 344445552 2666666654
Done!