Query 010987
Match_columns 496
No_of_seqs 204 out of 1116
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 18:26:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010987.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010987hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2if1a_ d.64.1.1 (A:) Eukaryot 99.8 3E-20 2.2E-24 160.8 7.9 91 398-490 34-124 (126)
2 d1d1ra_ d.64.1.1 (A:) YciH {Es 99.6 4E-17 2.9E-21 131.5 4.4 77 406-489 4-81 (83)
3 d2cx1a1 b.122.1.1 (A:91-183) H 99.5 3.9E-15 2.8E-19 122.7 3.7 66 1-69 21-89 (93)
4 d1q7ha1 b.122.1.1 (A:69-153) H 99.4 1.7E-13 1.3E-17 110.8 4.4 63 1-68 22-84 (85)
5 d2apoa1 b.122.1.1 (A:247-331) 98.3 4.3E-07 3.1E-11 72.4 5.8 57 1-62 22-78 (85)
6 d2ey4a1 b.122.1.1 (A:253-336) 98.2 1.1E-06 7.8E-11 69.9 5.9 57 1-62 21-77 (84)
7 d1iq8a3 b.122.1.1 (A:506-582) 98.0 3.1E-06 2.2E-10 66.0 6.2 55 1-60 22-76 (77)
8 d2q07a1 b.122.1.1 (A:460-527) 98.0 5E-06 3.6E-10 63.2 5.8 53 1-60 15-67 (68)
9 d1v32a_ a.42.1.1 (A:) Hypothet 97.7 8.1E-06 5.9E-10 66.7 3.9 54 305-358 19-72 (101)
10 d1uhra_ a.42.1.1 (A:) SWI/SNF 97.6 1.7E-05 1.2E-09 64.0 4.3 54 299-358 11-64 (93)
11 d1v31a_ a.42.1.1 (A:) Hypothet 97.5 2.2E-05 1.6E-09 63.3 3.4 55 298-358 10-64 (93)
12 d1r3ea1 b.122.1.1 (A:238-318) 97.4 2.9E-05 2.1E-09 60.9 3.1 55 1-61 21-75 (81)
13 d2axia1 a.42.1.1 (A:25-109) MD 90.2 0.04 2.9E-06 42.1 1.1 60 298-358 2-62 (85)
14 d1ttva_ a.42.1.1 (A:) MDM2 {Af 89.3 0.11 7.9E-06 41.1 3.1 62 297-359 9-71 (107)
15 d1neea1 d.241.1.1 (A:1-98) Tra 87.3 0.079 5.8E-06 42.1 1.1 66 404-480 26-95 (98)
16 d1w5sa1 a.4.5.11 (A:300-409) C 56.0 2.5 0.00018 33.7 2.1 59 182-244 14-73 (110)
17 d1jrma_ d.206.1.1 (A:) Hypothe 43.7 15 0.0011 28.6 5.0 49 435-483 54-102 (104)
18 d1r7ja_ a.4.5.49 (A:) Sso10a ( 42.3 8 0.00059 29.4 3.1 29 222-254 30-58 (90)
19 d1in0a2 d.58.49.1 (A:90-163) H 35.3 16 0.0012 26.7 3.6 66 418-491 4-74 (74)
20 d1i5za1 a.4.5.4 (A:138-206) Ca 34.4 17 0.0013 25.4 3.7 22 222-243 41-62 (69)
21 d1zyba1 a.4.5.4 (A:148-220) Pr 29.0 15 0.0011 26.3 2.6 27 225-255 42-68 (73)
22 d1sqwa1 b.122.1.1 (A:95-170) N 28.6 70 0.0051 23.1 6.2 40 14-54 30-69 (76)
23 d2as0a1 b.122.1.9 (A:1-72) Hyp 23.0 44 0.0032 23.4 4.2 28 13-41 31-58 (72)
24 d1p6ra_ a.4.5.39 (A:) Penicill 21.6 44 0.0032 24.2 4.1 59 179-255 11-69 (82)
25 d1urra_ d.58.10.1 (A:) Acylpho 21.5 1.2E+02 0.0087 22.2 6.8 62 424-488 12-75 (97)
26 d1w2ia_ d.58.10.1 (A:) Acylpho 21.4 1.2E+02 0.0088 22.0 6.8 44 431-476 15-58 (90)
27 d1k8ba_ d.241.1.1 (A:) Transla 20.6 42 0.0031 22.4 3.4 40 421-466 8-51 (52)
No 1
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80 E-value=3e-20 Score=160.81 Aligned_cols=91 Identities=29% Similarity=0.425 Sum_probs=81.7
Q ss_pred cccccCCcceEEEEEEEecCCCcceEEeCcCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHH
Q 010987 398 SVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLV 477 (496)
Q Consensus 398 ~~~~kG~~~~I~I~~e~R~g~K~VT~V~gle~f~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~~L~ 477 (496)
...++|...+|+|++++|+|||.||+|+||+ +++|+++||++|+++|||||||.+.++. +.+|+|||||++.|.+||.
T Consensus 34 ~~~~~~~~~~I~I~~ekR~G~K~VT~I~Gl~-~~~dlk~laK~lKk~~acggSVk~~~~~-~~~I~IQGD~r~~v~~~L~ 111 (126)
T d2if1a_ 34 DLLPAGTEDYIHIRIQQRNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEY-GEVIQLQGDQRKNICQFLV 111 (126)
T ss_dssp SCCSCSCTTCEECCCCCSSSSCCBCEEBSCC-TTSCHHHHHTTHHHHTCCCEEEECCTTT-SSEEEESBCCHHHHHHHHH
T ss_pred ccCCCCCcceEEEEEEecCCCCCeEEEECCC-CcccHHHHHHHHHHhcCCCceEEeCCCC-CcEEEEcccHHHHHHHHHH
Confidence 3677889999999999999999999999998 8999999999999999999999987654 5899999999999999998
Q ss_pred HhcCCCCccEEEc
Q 010987 478 EQFGIPKRYIEVL 490 (496)
Q Consensus 478 ~~~gip~~~I~~~ 490 (496)
++..+++..|.+.
T Consensus 112 ~~g~~~k~~I~vH 124 (126)
T d2if1a_ 112 EIGLAKDDQLKVH 124 (126)
T ss_dssp HHTSSCTTTEECC
T ss_pred HcCCCccccEEec
Confidence 8655577788764
No 2
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
Probab=99.64 E-value=4e-17 Score=131.50 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=67.0
Q ss_pred ceEEEEEEEe-cCCCcceEEeCcCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCCCC
Q 010987 406 KTIQIVTERR-QGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPK 484 (496)
Q Consensus 406 ~~I~I~~e~R-~g~K~VT~V~gle~f~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~~L~~~~gip~ 484 (496)
..|+|+.++| +++|.||+|+||+.|.+|+++||++|+++||||+|| ++.+|+|||||++.|.++|.+ .|++.
T Consensus 4 ~~Vri~~e~kgR~GK~VT~I~Gl~~~~~dlk~l~k~lKk~~gcGgsv------k~~~I~lQGd~~~~v~~~L~~-~G~~~ 76 (83)
T d1d1ra_ 4 GVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAV------KDGVIEIQGDKRDLLKSLLEA-KGMKV 76 (83)
T ss_dssp CEEEEEECCCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBC------CSSCEEECSCCHHHHHHHHHH-HTCEE
T ss_pred eEEEEEEEcCCCCCCeEEEEECCcCCHHHHHHHHHHHHHHhcCCEEE------ECCEEEEeCcHHHHHHHHHHH-cCCce
Confidence 3678887665 345999999999999999999999999999999999 457999999999999999976 69988
Q ss_pred ccEEE
Q 010987 485 RYIEV 489 (496)
Q Consensus 485 ~~I~~ 489 (496)
+++-+
T Consensus 77 K~~GG 81 (83)
T d1d1ra_ 77 KLAGG 81 (83)
T ss_dssp CCCCC
T ss_pred eeecC
Confidence 77643
No 3
>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525, C-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=99.49 E-value=3.9e-15 Score=122.67 Aligned_cols=66 Identities=29% Similarity=0.455 Sum_probs=58.8
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHH---hcCCcccEEEEEEeecccccccCC
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEAL---KAGLRGKALRITHYYRDLLWGSVE 69 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~---~~~~kGkav~ilH~~gD~LW~~g~ 69 (496)
|+|||+... +.|++|++|+|+..+++.|+|||++.||+++|. ..+.+|++|+++||+||+||++++
T Consensus 21 m~pGIv~~~---g~f~~Gd~V~I~~~~~~~~iAvG~~~~~s~ei~~~~g~~~kG~~v~~lh~~gD~lw~~~~ 89 (93)
T d2cx1a1 21 MIPGVVGVE---GSFTRGDVVAALYHETRTPVMVGVAEVDSSALEKLYREKARGRAVRRVHRLGDALWELAQ 89 (93)
T ss_dssp EGGGEEEEE---ECCCTTCEEEEEETTTTEEEEEEEESSCHHHHHHHHHHTCCSEEEEEEEETTSHHHHHHH
T ss_pred CccccEECC---CCCCCCCEEEEEECCCCeEEEEEEEecCHHHHHHHhccCCCceEEEEEEEechhhhhhhh
Confidence 799998533 589999999999998899999999999999975 247899999999999999999874
No 4
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=99.35 E-value=1.7e-13 Score=110.80 Aligned_cols=63 Identities=37% Similarity=0.391 Sum_probs=55.2
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecccccccC
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSV 68 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD~LW~~g 68 (496)
|+|||+... +.|++|++|+|...+ ..++|||.+.||+.++. ...+|++++++|++||+||++.
T Consensus 22 ~~pGV~~~~---~~~~~gd~V~I~~~~-g~~iavG~a~~ss~e~~-~~~~G~~v~v~h~~gD~lw~~~ 84 (85)
T d1q7ha1 22 FAPGIVSMD---DSIRKGDMIFVKSSK-GYFIAVGMAEMDAGEVM-ATKRGKAARIIHFPGDELIRAF 84 (85)
T ss_dssp EGGGEEEEC---TTCCTTCEEEEEETT-SCEEEEEEESSCHHHHH-HHCCSEEEEEEECTTSHHHHHC
T ss_pred CCCccEECC---CCCCCCCEEEEEeCC-CCEEEEEEEEeCHHHHH-hhcCCEEEEEEEEcCceEEEec
Confidence 789998643 589999999999754 56999999999999994 5789999999999999999874
No 5
>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=98.28 E-value=4.3e-07 Score=72.45 Aligned_cols=57 Identities=26% Similarity=0.362 Sum_probs=48.6
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecc
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRD 62 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD 62 (496)
|+|||+.-. +.|.+|++|+|... +..++|||.+.+|+++|. ...+|.|+++.|.+.|
T Consensus 22 ~~pGV~~~~---~~~~~Gd~V~V~~~-~g~~iavG~~~~ss~ei~-~~~~G~av~~~~V~~~ 78 (85)
T d2apoa1 22 YVRGIAKLS---KGIGKGETVLVETL-KGEAVAVGKALMNTKEIL-NADKGVAVDVERVYMD 78 (85)
T ss_dssp EGGGEEEEE---TTCCTTCEEEEECT-TSCEEEEEEESSCHHHHH-HCSSSEEEEEEEECSC
T ss_pred cccEEEEEc---CCCcCCCEEEEEeC-CCCEEEEEEEeeCHHHHh-hcCCCEEEEEEEEecC
Confidence 689998532 47999999999976 455999999999999994 5789999999998855
No 6
>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=98.17 E-value=1.1e-06 Score=69.89 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=48.8
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeecc
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRD 62 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~gD 62 (496)
|+|||+... ++|++|++|+|... +..++|||++.+|+++|. ...+|+|+++-|.+.|
T Consensus 21 ~~~GV~~~~---~~f~~Gd~V~I~~~-~g~~iavG~a~~ss~ei~-~~~kG~av~~~~v~m~ 77 (84)
T d2ey4a1 21 AVPGIAKLH---AGIKRGDLVAIMTL-KDELVALGKAMMTSQEML-EKTKGIAVDVEKVFMP 77 (84)
T ss_dssp EGGGEEEEE---TTCCTTCEEEEEET-TSCEEEEEEESSCHHHHH-HCCSSEEEEEEEECSC
T ss_pred CCCeEEEEc---CCCCCCCEEEEEeC-CCceEEEEEEeeCHHHHH-HhcCCeEEEEEEEecC
Confidence 689998643 47999999999976 457899999999999995 5789999999999854
No 7
>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=98.04 E-value=3.1e-06 Score=66.01 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=46.7
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEee
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~ 60 (496)
|+|||+... +.|++|+.|.|... +..++|||++.+|+++|. ...||+||++=|.+
T Consensus 22 ~~~GV~~~~---~~~~~Gd~V~I~~~-~g~~iavG~a~~ss~ei~-~~~kG~avk~r~~~ 76 (77)
T d1iq8a3 22 FAKFVIFAD---PGIRPYDEVLVVNE-NDELLATGQALLSGREMI-VFQYGRAVKVRKGV 76 (77)
T ss_dssp EGGGEEEEC---TTCCTTCEEEEECT-TCCEEEEEEESSCHHHHH-HCCSSEEEEEEEEC
T ss_pred ccCeEEEEc---CCCCCCCEEEEEEC-CCcEEEEEEEecCHHHHH-hcCCcEEEEecCcc
Confidence 689998643 58999999999875 557999999999999995 46799999998864
No 8
>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.96 E-value=5e-06 Score=63.23 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=43.1
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEee
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~ 60 (496)
|+|||+.- + +++++|+.|.|. +..++|||.+.|+..|| ....||+||++=|.|
T Consensus 15 ~apgI~~~-d--~~I~~GD~V~V~---~ge~vavG~A~ms~~Em-~~~~kG~aVkvR~~f 67 (68)
T d2q07a1 15 FAGGVLRA-D--EKIRPNDVVVFH---NSRIFGVGLAAMSGKEM-AGSEKGIAINVKRKF 67 (68)
T ss_dssp EGGGEEEE-C--TTCCTTCEEEEE---CSSCEEEEEESSCHHHH-SCC--CEEEEEEEEE
T ss_pred cccchhhh-C--CCCCCCCEEEEE---eCCEEEEEEEeeCHHHH-hhcCCcEEEEEeccc
Confidence 68998753 2 689999999996 35799999999999999 457899999997765
No 9
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.74 E-value=8.1e-06 Score=66.73 Aligned_cols=54 Identities=30% Similarity=0.447 Sum_probs=49.0
Q ss_pred CchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010987 305 HVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 358 (496)
Q Consensus 305 ~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 358 (496)
.+..|+..++.+.+..+++.||-..|++||+.|||.++.|++.|..|+.|..++
T Consensus 19 eL~~FL~~~g~~~~~~~sR~eVtk~iw~YIK~nnLqdp~nkr~I~~D~~L~~Lf 72 (101)
T d1v32a_ 19 QLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLF 72 (101)
T ss_dssp HHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHT
T ss_pred HHHHHHHhcCCCCcccCCHHHHHHHHHHHHHHhcCCCCccCCEEccCHHHHHHh
Confidence 456777667888889999999999999999999999999999999999999865
No 10
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.65 E-value=1.7e-05 Score=63.96 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=47.5
Q ss_pred EeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010987 299 VYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 358 (496)
Q Consensus 299 lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 358 (496)
-|+.+..+..|+. . ...|+++|-..|++||+.|||.|+.|++.|..|+.|.+++
T Consensus 11 ~~~lS~~La~~lg---~---~~~sR~~v~k~iw~YIk~n~Lqdp~nkr~I~cD~~L~~lf 64 (93)
T d1uhra_ 11 QFKLDPRLARLLG---I---HTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIF 64 (93)
T ss_dssp EEEECTTHHHHTC---C---SEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHT
T ss_pred CCCCCHHHHHHHC---C---CCcCHHHHHHHHHHHHHHhcCCCCCCCCEEecCHHHHHHh
Confidence 3888888888863 3 2579999999999999999999999999999999999865
No 11
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.53 E-value=2.2e-05 Score=63.31 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=47.6
Q ss_pred EEeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010987 298 EVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 358 (496)
Q Consensus 298 ~lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 358 (496)
+-|+++..+..|+ |.+ ..|+++|-..|++||+.|||.|++|++.|..|+.|..++
T Consensus 10 ~~~~lS~~La~~l---g~~---~~sR~~v~k~iw~YIk~n~Lqd~~nkr~I~~D~~L~~lf 64 (93)
T d1v31a_ 10 EKFKLSTALMDVL---GIE---VETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF 64 (93)
T ss_dssp CCEECCHHHHHHS---CCS---EECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHS
T ss_pred CCccCCHHHHHHH---CcC---cCcHHHHHHHHHHHHHHhCCCCCCCCCEEecCHHHHHHh
Confidence 4588888888886 332 469999999999999999999999999999999999865
No 12
>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=97.45 E-value=2.9e-05 Score=60.88 Aligned_cols=55 Identities=15% Similarity=-0.022 Sum_probs=41.5
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEEeec
Q 010987 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYR 61 (496)
Q Consensus 1 M~PGv~~~~~~~~~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav~ilH~~g 61 (496)
|.|||+.- + +|++|+.|+|... +..++|+|.+.+++++|. ...||.+.+.++.+-
T Consensus 21 ~~pGI~~~-d---~~~~Gd~V~I~~~-~g~~iaiG~a~~~S~ei~-~~~Kg~~~~~i~k~~ 75 (81)
T d1r3ea1 21 HLEMLKEW-D---GFKKGEVVRVFNE-EGRLLALAEAERNSSFLE-TLRKHERNERVLTLR 75 (81)
T ss_dssp ESSSCCEE-C---CCCTTCEEEEECS-SSCEEEEEEESSCTTCCC-CSCC----CEEEEEE
T ss_pred ccccceee-c---ccCCCCEEEEEeC-CCCEEEEEEEecCHHHHH-HhhcccccceEeeee
Confidence 68999863 2 5999999999976 567999999999999994 467999877776543
No 13
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.21 E-value=0.04 Score=42.07 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=51.7
Q ss_pred EEeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHH
Q 010987 298 EVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDAL 358 (496)
Q Consensus 298 ~lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l 358 (496)
.+.+|...+..+++..|+. ++.||..||=-.|-+||-.+.|-|++++.+|.= |+.|.+++
T Consensus 2 ~lVrPkp~Ll~~L~~~GA~-~~~fT~kqVm~yLgqYIm~K~LyD~~~qhiV~C~~D~LG~l~ 62 (85)
T d2axia1 2 TLVRPKPLLLKLLKSVGAQ-KDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLF 62 (85)
T ss_dssp CEEEECHHHHHHHHHTTCC-CSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHH
T ss_pred CcccCcHHHHHHHHHcCCC-cceeeHHHHHHHHHHHHHHHHhcCcccCceEecCCchHHhhc
Confidence 4678888889999998875 578999999999999999999999999888854 67788765
No 14
>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=89.35 E-value=0.11 Score=41.12 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=52.8
Q ss_pred EEEeccCCCchhhhhccCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHHh
Q 010987 297 TEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDALF 359 (496)
Q Consensus 297 ~~lY~p~~~~~~~f~~~~~~~~~~yt~~eiR~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l~ 359 (496)
+.+.+|...+..++...|+. ++.||..||--.|-+||-.+.|-|++++.+|.= |+.|.+++.
T Consensus 9 ~~lVrPkp~LL~~L~~~GA~-~~~fT~keVm~yLgqYIm~K~LyD~~~qhiV~C~~D~LG~llg 71 (107)
T d1ttva_ 9 EKLVQPTPLLLSLLKSAGAQ-KETFTMKEVLYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFG 71 (107)
T ss_dssp CCCEEECHHHHHHHHHTTCC-SSCBCHHHHHHHHHHHHHHHTCBCSSCTTEECCSSCHHHHHHT
T ss_pred ccccCCCHHHHHHHHHcCCC-cceeeHHHHHHHHHHHHHHHHhcCcccCceEecCCchHHhhcC
Confidence 45678988899999998874 588999999999999999999999999998854 677887653
No 15
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=87.34 E-value=0.079 Score=42.10 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=47.1
Q ss_pred CcceEEEEEEEecCCCcceEEeCcCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHh
Q 010987 404 ALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQ 479 (496)
Q Consensus 404 ~~~~I~I~~e~R~g~K~VT~V~gle~f----~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~~L~~~ 479 (496)
..|+..+..+ |+| |++.||... .-+++-+.+.|.+.+++++++. +..+.|+|.+.....+-+..+
T Consensus 26 ~mP~~~v~~e---Gkk--Tii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~------~~~lii~G~~~~~~i~~~l~~ 94 (98)
T d1neea1 26 EVPKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE------GGRAILQGKFTHFLINERIED 94 (98)
T ss_dssp CCSCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB------TTTEEEESSCSSSHHHHHHHH
T ss_pred ecCCceEEEe---cce--EEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEe------CCEEEEEeeeCHHHHHHHHHH
Confidence 3455555554 655 889998654 5689999999999999999982 346889999766555433343
Q ss_pred c
Q 010987 480 F 480 (496)
Q Consensus 480 ~ 480 (496)
|
T Consensus 95 y 95 (98)
T d1neea1 95 Y 95 (98)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>d1w5sa1 a.4.5.11 (A:300-409) CDC6-like protein APE0152, C-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=56.04 E-value=2.5 Score=33.71 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=45.6
Q ss_pred HHHHhhhcCCCCCCCCChhhhhhhcc-cCCCCCCCceeeeccccccHHHHHHHHhhCCceEEee
Q 010987 182 LLQALHTTVKDKDLPMPGSTLWSNHI-LPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLISVKE 244 (496)
Q Consensus 182 ll~al~~~~~~~~LPi~~S~F~s~~i-lp~~P~~~~ldiKKSS~KK~skFLk~m~K~gll~~Ke 244 (496)
+|.||........-++.+...|+.|- +.|. .++++--+|..+.++|+.++..|+|..+.
T Consensus 14 vL~~I~~~~~~~~~~~~tGei~~~Y~ev~c~----~~~~~P~~~t~~~~~l~~Le~lGiI~~r~ 73 (110)
T d1w5sa1 14 ILRLIAEATLGGMEWINAGLLRQRYEDASLT----MYNVKPRGYTQYHIYLKHLTSLGLVDAKP 73 (110)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH----HSCCCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHH----HhCCCCccHHHHHHHHHHHHHcCCeEEEe
Confidence 44444321224567899999999995 5543 47899999999999999999999999874
No 17
>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=43.68 E-value=15 Score=28.56 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCCC
Q 010987 435 EALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIP 483 (496)
Q Consensus 435 ~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~~L~~~~gip 483 (496)
+++.+.|.+.|.++.++......+...|.|.|.-.+.+.++|.++.|.+
T Consensus 54 ~ali~~Lak~lks~I~I~~G~tSR~K~i~I~g~~~~~~~~~L~~~lg~~ 102 (104)
T d1jrma_ 54 REIIKEFSETFGRDVEIVSGQKSRQKTIRIQGMGRDLFLKLVSEKFGLE 102 (104)
T ss_dssp HHHHHHHHHHHSSEEEECSCGGGSEEEEEEESCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHhCCCEEEEecCCCCceEEEEeCCCHHHHHHHHHHHhcCC
Confidence 3677888888876655543222234799999999999999999988764
No 18
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=42.31 E-value=8 Score=29.37 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=23.0
Q ss_pred cccccHHHHHHHHhhCCceEEeeccCCCeeEEE
Q 010987 222 SSHKKLTKWLQAKSSAGLISVKEDKYKKESMLF 254 (496)
Q Consensus 222 SS~KK~skFLk~m~K~gll~~Ke~~~~g~~~I~ 254 (496)
-||..+.+||+.|.+.|||+-. ++...||
T Consensus 30 Ls~~~~~kyl~~L~~~GLI~~~----~~~Y~iT 58 (90)
T d1r7ja_ 30 LSYALTGRYIKMLMDLEIIRQE----GKQYMLT 58 (90)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE----TTEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCeeec----CCEEEEC
Confidence 4899999999999999999633 4455554
No 19
>d1in0a2 d.58.49.1 (A:90-163) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]}
Probab=35.29 E-value=16 Score=26.67 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=41.9
Q ss_pred CCcceEEeCcCCCCCCHHHHHHHHhhh-cccceEEecCCCCCCcEEEEcCCcHHHHHH---HHHH-hcCCCCccEEEcc
Q 010987 418 NKKMTKLSGLETFLMDPEALASELQKK-FACSTTVAELPGKKGQEVLIQGGVIADVAK---HLVE-QFGIPKRYIEVLD 491 (496)
Q Consensus 418 ~K~VT~V~gle~f~id~~~lak~l~k~-~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~---~L~~-~~gip~~~I~~~~ 491 (496)
+..|++..|++.- ..+++.+.++.. +-.-++| .|++|-|.|..++.+-+ +|.+ .+++|-.|+.+.|
T Consensus 4 rq~i~l~~GI~~e--~AKkI~k~IK~~k~KVq~~I------QGd~vRVtgKkrDdLQ~vi~llk~~d~~~pLQF~NfRD 74 (74)
T d1in0a2 4 SKEIKLKQGIETE--MAKKITKLVKDSKIKVQTQI------QGEQVRVTGKSRDDLQAVIQLVKSAELGQPFQFNNFRD 74 (74)
T ss_dssp EEEEEECCSCCHH--HHHHHHHHHHHHTCSEEEEE------ETTEEEEEESCHHHHHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred EEEEEeecCcCHH--HHHHHHHHHHhcCCcceEEE------cCcEEEecCCCHHHHHHHHHHHHhcCcCCCeeeccCCC
Confidence 3567777777632 244455555432 3445556 46899999987776554 5544 5799999988754
No 20
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.40 E-value=17 Score=25.37 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.8
Q ss_pred cccccHHHHHHHHhhCCceEEe
Q 010987 222 SSHKKLTKWLQAKSSAGLISVK 243 (496)
Q Consensus 222 SS~KK~skFLk~m~K~gll~~K 243 (496)
+|--.+++.|+.|+++|+|++.
T Consensus 41 ~sRetvsr~L~~l~~~glI~~~ 62 (69)
T d1i5za1 41 CSRETVGRILKMLEDQNLISAH 62 (69)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEc
Confidence 3444799999999999999987
No 21
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=28.99 E-value=15 Score=26.27 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=21.6
Q ss_pred ccHHHHHHHHhhCCceEEeeccCCCeeEEEE
Q 010987 225 KKLTKWLQAKSSAGLISVKEDKYKKESMLFS 255 (496)
Q Consensus 225 KK~skFLk~m~K~gll~~Ke~~~~g~~~I~~ 255 (496)
-.++..|+.|+++|+|... +|.+.|.+
T Consensus 42 ~tvsr~l~~l~~~g~I~~~----~~~i~I~d 68 (73)
T d1zyba1 42 LNISKTLNELQDNGLIELH----RKEILIPD 68 (73)
T ss_dssp HHHHHHHHHHHHTTSCEEE----TTEEEESC
T ss_pred HHHHHHHHHHHHCCCEEec----CCEEEEcc
Confidence 3789999999999999875 56666654
No 22
>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.56 E-value=70 Score=23.12 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=32.5
Q ss_pred CCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEE
Q 010987 14 SFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKAL 54 (496)
Q Consensus 14 ~~~~g~~vaV~~~~~~~p~AVG~~~~~~~~~~~~~~kGkav 54 (496)
..++++-|.|.+. +..|+..|+++-|+.|.......+.+|
T Consensus 30 ~~p~~~GVvV~sm-~D~PLGFGvaakst~e~r~~dp~~ivv 69 (76)
T d1sqwa1 30 NTSQYQGVVVYSM-ADIPLGFGVAAKSTQDCRKVDPMAIVV 69 (76)
T ss_dssp TCCTTCEEEEEET-TCCEEEEEEESSCHHHHHHSCTTSEEE
T ss_pred CCCCCceEEEEeC-CCCccceeeeccCHHHHhhCCCccEEE
Confidence 4567899999877 678999999999999997666666554
No 23
>d2as0a1 b.122.1.9 (A:1-72) Hypothetical protein PH1915, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.97 E-value=44 Score=23.45 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=22.4
Q ss_pred CCCCCCCeEEEEeCCCCCeEEEEEeecCh
Q 010987 13 PSFLSGEPWAVKVPGNPAPIAVGSTTMSS 41 (496)
Q Consensus 13 ~~~~~g~~vaV~~~~~~~p~AVG~~~~~~ 41 (496)
+.|..|++|.|... +...+|.|....++
T Consensus 31 g~~~~Gd~V~v~d~-~g~~lg~G~~n~~S 58 (72)
T d2as0a1 31 GDIKPGDIVEVYTR-GGKFLGKGFANPNS 58 (72)
T ss_dssp SCCCTTCEEEEEET-TCCEEEEEEECTTS
T ss_pred CCcCCCcEEEEEeC-CCcEEEEEEECCCC
Confidence 47899999999976 46789999877554
No 24
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=21.64 E-value=44 Score=24.25 Aligned_cols=59 Identities=8% Similarity=0.155 Sum_probs=37.8
Q ss_pred HHHHHHHhhhcCCCCCCCCChhhhhhhcccCCCCCCCceeeeccccccHHHHHHHHhhCCceEEeeccCCCeeEEEE
Q 010987 179 DKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLISVKEDKYKKESMLFS 255 (496)
Q Consensus 179 ~~all~al~~~~~~~~LPi~~S~F~s~~ilp~~P~~~~ldiKKSS~KK~skFLk~m~K~gll~~Ke~~~~g~~~I~~ 255 (496)
+..+|.+|.. .. |+.+..++...- . .-++ +|.-+..||..|.+.|+|+.+. .|-..+-.
T Consensus 11 E~~IM~~lW~----~~-~~t~~ei~~~l~-----~--~~~~---~~tTv~T~L~rL~~KG~l~~~k---~gr~~~Y~ 69 (82)
T d1p6ra_ 11 ELEVMKVIWK----HS-SINTNEVIKELS-----K--TSTW---SPKTIQTMLLRLIKKGALNHHK---EGRVFVYT 69 (82)
T ss_dssp HHHHHHHHHT----SS-SEEHHHHHHHHH-----H--HSCC---CHHHHHHHHHHHHHTTSEEEEE---ETTEEEEE
T ss_pred HHHHHHHHHh----CC-CCCHHHHHHHhc-----c--ccCC---cHhHHHHHHHHHHHCCCeEEEe---cCCeEEEE
Confidence 3457788883 23 677777665431 1 1122 4557999999999999999872 34444444
No 25
>d1urra_ d.58.10.1 (A:) Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=21.49 E-value=1.2e+02 Score=22.19 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=41.5
Q ss_pred EeCcCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHH--HHHHHHHHhcCCCCccEE
Q 010987 424 LSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIA--DVAKHLVEQFGIPKRYIE 488 (496)
Q Consensus 424 V~gle~f~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~--~v~~~L~~~~gip~~~I~ 488 (496)
|.|.= -|+-...++..+.+++...+.|.-.+.+ ..+|.+||+..+ ...+.|.+ -|=|...|+
T Consensus 12 V~G~V-QGVGFR~~~~~~A~~l~l~G~V~N~~dG-~Vei~~qG~~~~i~~f~~~l~~-~~p~~a~V~ 75 (97)
T d1urra_ 12 IFGRV-QGVFFRKHTSHEAKRLGVRGWCMNTRDG-TVKGQLEAPMMNLMEMKHWLEN-NRIPNAKVS 75 (97)
T ss_dssp EEEEC-SSSSHHHHHHHHHHHHTCEEEEEECTTS-CEEEEEEECHHHHHHHHHHHHH-CCSTTCEEE
T ss_pred EEEEe-cCcCChHHHHHHHHHcCCEEEEEECCCC-CEEEEEEcCHHHHHHHHHHHhh-CCCCCcEEE
Confidence 45543 2777889999999999999999876643 389999998433 34444422 233344443
No 26
>d1w2ia_ d.58.10.1 (A:) Acylphosphatase {Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.38 E-value=1.2e+02 Score=22.03 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHH
Q 010987 431 LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHL 476 (496)
Q Consensus 431 ~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG~~~~~v~~~L 476 (496)
|+-...++..+..+++-.+.|...+.+ ..++.+||+ .+.|.+|+
T Consensus 15 GVGFR~~v~~~A~~lgl~G~V~N~~dG-~Vei~~qG~-~~~i~~f~ 58 (90)
T d1w2ia_ 15 GVGFRWSMQREARKLGVNGWVRNLPDG-SVEAVLEGD-EERVEALI 58 (90)
T ss_dssp SSSHHHHHHHHHHHHTCEEEEEECTTS-CEEEEEEEE-HHHHHHHH
T ss_pred CcCChHHHHHHHHHcCCeEEEEECCCC-CEEEEEECC-HHHHHHHH
Confidence 667888999999999999999766542 389999998 56666666
No 27
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.59 E-value=42 Score=22.45 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=32.1
Q ss_pred ceEEeCcCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcC
Q 010987 421 MTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQG 466 (496)
Q Consensus 421 VT~V~gle~f----~id~~~lak~l~k~~a~s~sv~~~~~~k~~eV~vQG 466 (496)
-|++.||... .=+|+-+.+.|.+.+++++++. +....|+|
T Consensus 8 kTvi~Nf~eI~~~L~R~p~hv~kfl~~ELgt~g~~~------~~rlii~G 51 (52)
T d1k8ba_ 8 RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE------GGRLILQR 51 (52)
T ss_dssp EEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE------TTEEEEEC
T ss_pred eEeeecHHHHHHHhCCCHHHHHHHHHHHhCCceeee------CCEEEEeC
Confidence 5888898644 3489999999999999999993 34677777
Done!