BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010988
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 141/507 (27%), Positives = 220/507 (43%), Gaps = 62/507 (12%)
Query: 6 SSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARF-KTVVARAMQSGL 64
++++PH V+ P+ QGH+ P+ + +LL G IT V T N R K+ +A
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDG-- 62
Query: 65 PLQLIEIQFPYQEAGIPEGSENFDMLHSTDLLF-----NFFKSXXXXXXXXXXXXXXXAP 119
+ F G+ + D+ L NF K P
Sbjct: 63 ---FTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTN--VP 117
Query: 120 KPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVHENVTSKSDYFV- 178
+C+VSD C +T+ A F +P + + S LL + + + + K + ++
Sbjct: 118 PVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLT 177
Query: 179 ----------VPGLP-----DQIEMTKVQVPLMRENSKDFGELVLAADM--KSYGIIINT 221
+PGL D ++ + P N + AD K I++NT
Sbjct: 178 NGCLETKVDWIPGLKNFRLKDIVDFIRTTNP----NDIMLEFFIEVADRVNKDTTILLNT 233
Query: 222 FEELESEYVKEYKKTKGGKVWCLGPVSLCNKQ-----DIDKAERGKKAAIDVSECLNWLD 276
F ELES+ + T ++ +GP+ KQ +D + + +ECL+WL+
Sbjct: 234 FNELESDVINALSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLD--SNLWKEDTECLDWLE 290
Query: 277 SWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKF 336
S P SVVYV GS +T Q++E GL KK F+W+IR + + +F
Sbjct: 291 SKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSV---IFSSEF 347
Query: 337 EERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCN 396
+ RG LI W PQ +L+HPSIGGFLTHCGWNS+ E+I AGVPM+ WP F DQ +
Sbjct: 348 TNEIADRG-LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTD 406
Query: 397 EKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMXXXXXXXXXXXXXXX 456
+ I IG+ EI VK+E++ K IN ++
Sbjct: 407 CRFICNEWEIGM--------------EIDTNVKREELAKLINEVI-AGDKGKKMKQKAME 451
Query: 457 FQMMAKRATEETGSSSLMIKLLIQDIM 483
+ A+ T G S + + +I+D++
Sbjct: 452 LKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 211/461 (45%), Gaps = 63/461 (13%)
Query: 7 SQQPHFVLFPFLAQGHMIPMIDIG-RLLAQNGAAITIVTT---PANAARFKTVVARAMQS 62
S+ PH + P GH+IP+++ RL+ +G +T V P + A+ R +
Sbjct: 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQ------RTVLD 57
Query: 63 GLPLQLIEIQFP------YQEAGIPEGSENFDMLHSTDLLFNFFKSXXXXXXXXXXXXXX 116
LP + + P + E + + S L F S
Sbjct: 58 SLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRL------- 110
Query: 117 XAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVHENVTSKSDY 176
P+ +V D+ D A F++P F+ + L + LH K+ E V+ +
Sbjct: 111 ----PTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLS--FFLHLPKLDETVSCEFRE 164
Query: 177 FVVP-GLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSY----GIIINTFEELESEYVK 231
P LP + + ++ KD L + K Y GI++NTF ELE +K
Sbjct: 165 LTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIK 224
Query: 232 EYKKTKGGK--VWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLG 289
++ K V+ +GP+ KQ+ + E SECL WLD+ P SV+YV G
Sbjct: 225 ALQEPGLDKPPVYPVGPLVNIGKQEAKQTEE--------SECLKWLDNQPLGSVLYVSFG 276
Query: 290 SICNLTSSQMIELGLGLEASKKPFIWVIRGG---------NNTSKEIQEWLLEEKFEERV 340
S LT Q+ EL LGL S++ F+WVIR ++ S+ L F ER
Sbjct: 277 SGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERT 336
Query: 341 KGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLI 400
K RG +I WAPQ +L+HPS GGFLTHCGWNS+LE++ +G+P+I WPL+ +Q N L+
Sbjct: 337 KKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL 396
Query: 401 VQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLM 441
+ + +R G++ LV++E+V + + LM
Sbjct: 397 SEDIRAALRPRA------GDDG----LVRREEVARVVKGLM 427
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 132/499 (26%), Positives = 219/499 (43%), Gaps = 55/499 (11%)
Query: 1 MASEGSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVT-------TPANAARFK 53
M+ ++ + P GH+ ++ +LL + + I P + K
Sbjct: 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK 60
Query: 54 TVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLHSTDLLFNFFKSXXXXXXXXXXX 113
+V+A Q L + L E++ P QE S F +L + L K+
Sbjct: 61 SVLASQPQIQL-IDLPEVEPPPQEL---LKSPEFYILTFLESLIPHVKATIKTIL----- 111
Query: 114 XXXXAPKPSCIVSDMCYPWTVDTAARFNIPRISFH----GFSCFCLLCLYNLHTSKVHEN 169
+ K +V D +D F IP F GF +L L N +V ++
Sbjct: 112 ----SNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSL-MLSLKNRQIEEVFDD 166
Query: 170 VTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMK-SYGIIINTFEELESE 228
+PG+ +Q+ + ++ LA + + GII+NTF +LE
Sbjct: 167 SDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQS 226
Query: 229 YVKEY--KKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYV 286
+ K ++ +GP+ Q K ++ + I L WLD P SVV++
Sbjct: 227 SIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWLDEQPDKSVVFL 281
Query: 287 CLGSI-CNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEE--RVKGR 343
C GS+ + SQ+ E+ LGL+ S F+W N+ K++ E F E ++G+
Sbjct: 282 CFGSMGVSFGPSQIREIALGLKHSGVRFLW----SNSAEKKV----FPEGFLEWMELEGK 333
Query: 344 GILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQV 403
G +I GWAPQV +L+H +IGGF++HCGWNS LE++ GVP++TWP++ +Q N +V+
Sbjct: 334 G-MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK- 391
Query: 404 LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMXXXXXXXXXXXXXXXFQMMAKR 463
GV +G+ V G + +V E++ K + LM + M++
Sbjct: 392 -EWGVGLGLRVDYRKGSD-----VVAAEEIEKGLKDLM---DKDSIVHKKVQEMKEMSRN 442
Query: 464 ATEETGSSSLMIKLLIQDI 482
A + GSS + + LI DI
Sbjct: 443 AVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 132/499 (26%), Positives = 219/499 (43%), Gaps = 55/499 (11%)
Query: 1 MASEGSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVT-------TPANAARFK 53
M+ ++ + P GH+ ++ +LL + + I P + K
Sbjct: 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK 60
Query: 54 TVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLHSTDLLFNFFKSXXXXXXXXXXX 113
+V+A Q L + L E++ P QE S F +L + L K+
Sbjct: 61 SVLASQPQIQL-IDLPEVEPPPQEL---LKSPEFYILTFLESLIPHVKATIKTIL----- 111
Query: 114 XXXXAPKPSCIVSDMCYPWTVDTAARFNIPRISFH----GFSCFCLLCLYNLHTSKVHEN 169
+ K +V D +D F IP F GF +L L N +V ++
Sbjct: 112 ----SNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSL-MLSLKNRQIEEVFDD 166
Query: 170 VTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMK-SYGIIINTFEELESE 228
+PG+ +Q+ + ++ LA + + GII+NTF +LE
Sbjct: 167 SDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQS 226
Query: 229 YVKEY--KKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYV 286
+ K ++ +GP+ Q K ++ + I L WLD P SVV++
Sbjct: 227 SIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWLDEQPDKSVVFL 281
Query: 287 CLGSI-CNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEE--RVKGR 343
C GS+ + SQ+ E+ LGL+ S F+W N+ K++ E F E ++G+
Sbjct: 282 CFGSMGVSFGPSQIREIALGLKHSGVRFLW----SNSAEKKV----FPEGFLEWMELEGK 333
Query: 344 GILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQV 403
G +I GWAPQV +L+H +IGGF++HCGWNS LE++ GVP++TWP++ +Q N +V+
Sbjct: 334 G-MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK- 391
Query: 404 LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMXXXXXXXXXXXXXXXFQMMAKR 463
GV +G+ V G + +V E++ K + LM + M++
Sbjct: 392 -EWGVGLGLRVDYRKGSD-----VVAAEEIEKGLKDLM---DKDSIVHKKVQEMKEMSRN 442
Query: 464 ATEETGSSSLMIKLLIQDI 482
A + GSS + + LI DI
Sbjct: 443 AVVDGGSSLISVGKLIDDI 461
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 107/198 (54%), Gaps = 18/198 (9%)
Query: 213 KSYGIIINTFEELESEYVKEYKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECL 272
K+ + IN+FEEL+ + K +K +GP +L + G CL
Sbjct: 213 KATAVFINSFEELDDSLTNDLK-SKLKTYLNIGPFNLITPPPVVPNTTG---------CL 262
Query: 273 NWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLL 332
WL P SVVY+ G++ ++++ L LEAS+ PFIW +R L
Sbjct: 263 QWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVH-------L 315
Query: 333 EEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGD 392
E F E+ +G G +++ WAPQ +L+H ++G F+THCGWNS E+++ GVP+I P FGD
Sbjct: 316 PEGFLEKTRGYG-MVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGD 374
Query: 393 QFCNEKLIVQVLNIGVRI 410
Q N +++ VL IGVRI
Sbjct: 375 QRLNGRMVEDVLEIGVRI 392
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 164/367 (44%), Gaps = 43/367 (11%)
Query: 122 SCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVHENVTSKSDYFV--- 178
+C+V+D + + D A + + LL +++T + E SK + V
Sbjct: 119 TCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLT--HVYTDLIREKTGSKEVHDVKSI 176
Query: 179 --VPGLPDQIEMTKVQVPLMRENSKDFGELVLAADM---KSYGIIINTFEELESEYVKEY 233
+PG P +++ + + ++++ F ++ + ++ + IN+F + ++
Sbjct: 177 DVLPGFP-ELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHP-LIENE 234
Query: 234 KKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICN 293
+K + +GP +L Q E G CL WLD +SVVY+ GS+
Sbjct: 235 LNSKFKLLLNVGPFNLTTPQRKVSDEHG---------CLEWLDQHENSSVVYISFGSVVT 285
Query: 294 LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQ 353
++ L LE PFIW RG L + F ER K +G I+ WAPQ
Sbjct: 286 PPPHELTALAESLEECGFPFIWSFRGDPKEK-------LPKGFLERTKTKG-KIVAWAPQ 337
Query: 354 VLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVE 413
V IL H S+G FLTH GWNS LE I GVPMI+ P FGDQ N L VL IGV +
Sbjct: 338 VEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV--- 394
Query: 414 VPLDFGEEEEIGVLVKKEDVVKAINMLMXXXXXXXXXXXXXXXFQMMAKRATEETGSSSL 473
+ GVL KE + KA+ + M + A +A E+ G+S++
Sbjct: 395 ---------DNGVLT-KESIKKALELTM-SSEKGGIMRQKIVKLKESAFKAVEQNGTSAM 443
Query: 474 MIKLLIQ 480
LIQ
Sbjct: 444 DFTTLIQ 450
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 17/128 (13%)
Query: 270 ECLNWLDSWPPNSVVYVCLGS-ICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQ 328
E +++ S N VV LGS + N T + + L + +W G
Sbjct: 10 EXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDGN-------- 61
Query: 329 EWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWP 388
+ G + W PQ +L HP F+TH G N EAI G+P + P
Sbjct: 62 --------KPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIP 113
Query: 389 LFGDQFCN 396
LF DQ N
Sbjct: 114 LFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 350 WAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVR 409
W PQ+ IL+ S F+TH G S++EA+S VPM+ P +Q N + IV+ L +G
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE-LGLGRH 368
Query: 410 I 410
I
Sbjct: 369 I 369
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 350 WAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVR 409
W PQ+ IL + F+TH G S E ++ PMI P DQF N ++ Q L + +
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLGVARK 346
Query: 410 IGVE 413
+ E
Sbjct: 347 LATE 350
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 350 WAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQF 394
W PQ +L H + + H G ++L A+ AGVP +++P GD F
Sbjct: 299 WVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3GB5|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn
pdb|3GFD|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Mono-Iodotyrosine (Mit)
pdb|3GFD|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Mono-Iodotyrosine (Mit)
pdb|3GH8|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|C Chain C, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|D Chain D, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|E Chain E, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|F Chain F, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|G Chain G, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|H Chain H, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
Length = 259
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 27 IDIGRLLA--QNGAAITIVTTPAN-AARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPE 82
I G LLA QN +T+ TTP N R + ++ R L L L+ + +P ++A +P+
Sbjct: 183 IACGLLLAALQNAGLVTVTTTPLNCGPRLRVLLGRPSHEKL-LVLLPVGYPSRDATVPD 240
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
Length = 375
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 168 ENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAAD--MKSYGIIINTFEEL 225
E S ++ P L + + T ++V L R N+ FG+ V +KSY I+ F
Sbjct: 195 EGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNT--FGDEVFNEPKVLKSYYYAISDF--- 249
Query: 226 ESEYVKEYKKTKGGKVWCLGPVSLCNKQDIDK---AERGKKAAIDVSECLNWLDSWP 279
GG+ C G S C K + DK + +D +CL + + P
Sbjct: 250 ----------AVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRP 296
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 350 WAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIG 407
W P +L+H LTH + LEA +AGVP++ P F + V L +G
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLG 343
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVA 57
+Q H + GH+ P + + LA+ G IT VTTP A K A
Sbjct: 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGA 52
>pdb|3LQY|A Chain A, Crystal Structure Of Putative Isochorismatase Hydrolase
From Oleispira Antarctica
Length = 190
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 36 NGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEA 78
NGA +V T A A + ++A+ Q GLP+ + +FP EA
Sbjct: 24 NGAKNPLVGTEAAAEQGAKLLAKFRQQGLPVVHVRHEFPTDEA 66
>pdb|3TNZ|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TNZ|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TO0|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
pdb|3TO0|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
Length = 259
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 40 ITIVTTPANAA-RFKTVVARAMQSGLPLQLIEIQFPYQEAGIPE 82
+T+ TTP NA R + ++ R L L L+ + +P ++A +P+
Sbjct: 198 VTVTTTPLNAGPRLRVLLGRPSHEKL-LVLLPVGYPSRDATVPD 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,747,182
Number of Sequences: 62578
Number of extensions: 542873
Number of successful extensions: 1220
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1191
Number of HSP's gapped (non-prelim): 20
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)