Query 010988
Match_columns 496
No_of_seqs 120 out of 1234
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 3.7E-68 8E-73 537.8 47.6 478 8-486 7-488 (491)
2 PLN03007 UDP-glucosyltransfera 100.0 3.7E-65 8E-70 521.8 48.0 470 5-484 1-480 (482)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.1E-65 8.8E-70 516.9 46.8 460 1-485 1-472 (477)
4 PLN02992 coniferyl-alcohol glu 100.0 3.1E-63 6.6E-68 500.0 45.9 435 8-483 4-468 (481)
5 PLN02208 glycosyltransferase f 100.0 4.2E-63 9E-68 497.5 43.5 433 8-485 3-440 (442)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 6.4E-63 1.4E-67 497.4 44.0 437 1-484 1-450 (451)
7 PLN02764 glycosyltransferase f 100.0 2.4E-62 5.3E-67 489.1 44.8 436 6-486 2-447 (453)
8 PLN00164 glucosyltransferase; 100.0 3.8E-62 8.1E-67 496.9 45.2 447 8-487 2-476 (480)
9 PLN03015 UDP-glucosyl transfer 100.0 4E-62 8.7E-67 489.0 44.2 439 7-482 1-466 (470)
10 PLN02555 limonoid glucosyltran 100.0 6.1E-62 1.3E-66 491.9 44.5 453 1-485 1-470 (480)
11 PLN02173 UDP-glucosyl transfer 100.0 5.4E-62 1.2E-66 488.4 43.4 430 7-483 3-447 (449)
12 PLN02210 UDP-glucosyl transfer 100.0 1.3E-61 2.8E-66 489.9 44.4 442 1-483 1-454 (456)
13 PLN02207 UDP-glycosyltransfera 100.0 2.4E-61 5.1E-66 485.4 44.0 449 7-484 1-465 (468)
14 PLN02670 transferase, transfer 100.0 2.8E-61 6.2E-66 485.4 43.0 452 8-486 5-467 (472)
15 PLN00414 glycosyltransferase f 100.0 5.1E-61 1.1E-65 483.0 44.1 434 8-485 3-441 (446)
16 PLN03004 UDP-glycosyltransfera 100.0 5.5E-61 1.2E-65 481.3 40.3 430 11-473 5-450 (451)
17 PLN02562 UDP-glycosyltransfera 100.0 3.3E-60 7.1E-65 479.3 44.0 422 9-482 6-447 (448)
18 PLN02152 indole-3-acetate beta 100.0 2.1E-60 4.6E-65 477.7 42.1 432 9-482 3-454 (455)
19 PLN02448 UDP-glycosyltransfera 100.0 2.9E-60 6.3E-65 483.3 43.6 438 7-485 8-458 (459)
20 PLN02554 UDP-glycosyltransfera 100.0 7E-60 1.5E-64 482.2 43.1 450 9-485 2-479 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 3.5E-59 7.7E-64 476.3 44.1 456 7-484 1-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.8E-49 3.9E-54 406.6 31.4 413 8-490 19-473 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 5.9E-50 1.3E-54 417.1 6.3 401 11-490 2-449 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.3E-42 2.8E-47 350.8 31.5 377 16-483 2-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 4.6E-42 9.9E-47 348.3 20.6 385 10-481 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 4.3E-41 9.3E-46 335.9 22.4 393 9-485 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.6E-39 3.5E-44 338.7 20.0 397 9-462 5-437 (496)
28 PRK12446 undecaprenyldiphospho 100.0 2E-26 4.4E-31 227.4 25.3 315 9-444 1-326 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 5.4E-25 1.2E-29 216.1 22.2 306 10-440 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 2.5E-23 5.5E-28 202.9 25.1 326 10-458 1-339 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 5.5E-22 1.2E-26 194.5 23.9 307 11-445 1-316 (321)
32 PRK00726 murG undecaprenyldiph 99.9 2.9E-19 6.3E-24 178.4 27.4 328 9-456 1-337 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.9E-17 4.1E-22 164.8 25.7 328 11-455 1-336 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.7 2.7E-16 5.8E-21 157.6 22.1 348 10-478 6-382 (385)
35 TIGR01133 murG undecaprenyldip 99.7 1.1E-15 2.3E-20 152.1 24.8 325 10-455 1-333 (348)
36 COG4671 Predicted glycosyl tra 99.7 8.4E-16 1.8E-20 143.0 21.7 338 7-444 7-366 (400)
37 PRK13609 diacylglycerol glucos 99.7 7.5E-15 1.6E-19 147.9 27.1 146 280-456 201-351 (380)
38 PRK13608 diacylglycerol glucos 99.7 8.4E-15 1.8E-19 147.6 21.6 148 280-458 201-353 (391)
39 PRK00025 lpxB lipid-A-disaccha 99.7 3.2E-14 6.9E-19 143.3 25.1 353 9-486 1-378 (380)
40 TIGR03590 PseG pseudaminic aci 99.7 6.2E-15 1.4E-19 141.0 18.1 104 282-399 171-278 (279)
41 PLN02605 monogalactosyldiacylg 99.5 4.4E-12 9.6E-17 127.6 25.3 144 279-454 204-359 (382)
42 TIGR03492 conserved hypothetic 99.5 8.7E-12 1.9E-16 125.2 26.8 334 18-444 5-365 (396)
43 PF04101 Glyco_tran_28_C: Glyc 99.5 4E-16 8.7E-21 138.0 -4.0 138 283-445 1-146 (167)
44 PLN02871 UDP-sulfoquinovose:DA 99.4 4.3E-10 9.3E-15 116.3 28.0 141 283-458 264-415 (465)
45 cd03814 GT1_like_2 This family 99.3 8.4E-09 1.8E-13 102.5 30.7 95 342-458 246-347 (364)
46 PF03033 Glyco_transf_28: Glyc 99.3 4.2E-12 9.2E-17 108.5 5.9 128 12-154 1-134 (139)
47 cd03823 GT1_ExpE7_like This fa 99.3 1.4E-08 3E-13 100.6 31.8 142 281-456 190-342 (359)
48 cd03817 GT1_UGDG_like This fam 99.2 3.3E-08 7.2E-13 98.3 30.9 97 342-461 258-361 (374)
49 cd04962 GT1_like_5 This family 99.2 5.5E-08 1.2E-12 97.4 31.2 332 10-457 1-350 (371)
50 cd03818 GT1_ExpC_like This fam 99.2 7.5E-08 1.6E-12 97.6 32.1 96 342-459 280-382 (396)
51 cd03800 GT1_Sucrose_synthase T 99.2 2.4E-08 5.2E-13 100.9 28.0 95 342-458 282-383 (398)
52 cd03794 GT1_wbuB_like This fam 99.2 4.1E-08 9E-13 98.1 29.2 149 281-459 219-381 (394)
53 cd03816 GT1_ALG1_like This fam 99.1 2.1E-07 4.6E-12 94.7 32.6 352 8-459 2-400 (415)
54 cd03801 GT1_YqgM_like This fam 99.1 6.2E-07 1.4E-11 88.5 34.6 332 11-455 1-353 (374)
55 cd03808 GT1_cap1E_like This fa 99.1 1.4E-07 3.1E-12 93.0 28.9 328 11-457 1-343 (359)
56 PRK05749 3-deoxy-D-manno-octul 99.1 1.8E-07 3.9E-12 95.7 29.7 114 344-484 303-422 (425)
57 PRK14089 ipid-A-disaccharide s 99.1 3.4E-08 7.4E-13 96.6 22.8 154 282-461 168-332 (347)
58 COG3980 spsG Spore coat polysa 99.1 2.4E-08 5.2E-13 91.0 19.7 142 281-455 158-301 (318)
59 PRK10307 putative glycosyl tra 99.1 1.3E-06 2.8E-11 89.0 35.2 147 283-459 230-389 (412)
60 cd03795 GT1_like_4 This family 99.0 6.6E-07 1.4E-11 88.9 31.3 149 283-460 192-349 (357)
61 cd03798 GT1_wlbH_like This fam 99.0 9.1E-07 2E-11 87.6 32.1 319 19-445 13-346 (377)
62 cd03820 GT1_amsD_like This fam 99.0 4E-07 8.7E-12 89.3 28.3 97 342-460 234-336 (348)
63 cd03799 GT1_amsK_like This is 99.0 1.6E-06 3.6E-11 85.9 31.9 94 342-457 235-341 (355)
64 cd03825 GT1_wcfI_like This fam 98.9 1E-06 2.2E-11 87.8 28.4 95 342-458 243-345 (365)
65 TIGR03449 mycothiol_MshA UDP-N 98.9 3.4E-06 7.3E-11 85.7 32.1 95 342-458 282-383 (405)
66 cd03819 GT1_WavL_like This fam 98.9 4.7E-06 1E-10 82.7 31.3 157 281-460 184-348 (355)
67 TIGR00236 wecB UDP-N-acetylglu 98.9 1E-06 2.2E-11 88.2 26.0 320 10-444 1-335 (365)
68 PRK09922 UDP-D-galactose:(gluc 98.9 3.2E-06 6.8E-11 84.5 28.8 150 283-460 181-343 (359)
69 cd03821 GT1_Bme6_like This fam 98.9 7.1E-06 1.5E-10 81.4 31.2 92 342-457 261-359 (375)
70 cd03822 GT1_ecORF704_like This 98.9 4.5E-06 9.7E-11 82.9 28.9 95 342-459 246-350 (366)
71 cd03805 GT1_ALG2_like This fam 98.8 6.9E-06 1.5E-10 82.9 29.8 94 342-458 279-379 (392)
72 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 7.9E-07 1.7E-11 88.9 21.1 136 280-444 197-338 (363)
73 cd03811 GT1_WabH_like This fam 98.8 4.3E-06 9.4E-11 82.0 26.1 141 281-452 188-341 (353)
74 cd03807 GT1_WbnK_like This fam 98.8 3.3E-05 7.2E-10 76.3 31.7 92 342-457 250-346 (365)
75 PF04007 DUF354: Protein of un 98.8 1.3E-05 2.9E-10 77.8 27.5 112 10-150 1-112 (335)
76 TIGR03087 stp1 sugar transfera 98.7 6.3E-06 1.4E-10 83.5 25.0 94 341-458 278-377 (397)
77 cd05844 GT1_like_7 Glycosyltra 98.7 2E-05 4.4E-10 78.7 28.2 94 342-457 244-350 (367)
78 cd03796 GT1_PIG-A_like This fa 98.7 0.00012 2.6E-09 74.2 32.9 132 281-444 192-334 (398)
79 TIGR02468 sucrsPsyn_pln sucros 98.7 9.7E-05 2.1E-09 81.1 33.0 163 269-459 468-653 (1050)
80 TIGR02472 sucr_P_syn_N sucrose 98.6 6.6E-05 1.4E-09 77.1 30.5 95 342-456 316-419 (439)
81 cd03812 GT1_CapH_like This fam 98.6 3.9E-05 8.4E-10 76.3 27.5 139 282-450 192-338 (358)
82 COG1519 KdtA 3-deoxy-D-manno-o 98.6 7E-05 1.5E-09 73.2 27.6 321 12-462 51-405 (419)
83 TIGR02149 glgA_Coryne glycogen 98.6 0.00011 2.4E-09 74.0 30.9 155 283-458 202-367 (388)
84 PRK01021 lpxB lipid-A-disaccha 98.6 0.00011 2.4E-09 75.9 30.5 203 222-462 368-590 (608)
85 TIGR03088 stp2 sugar transfera 98.6 8.5E-05 1.9E-09 74.5 29.5 94 342-457 254-352 (374)
86 cd03802 GT1_AviGT4_like This f 98.6 8.1E-05 1.7E-09 73.2 28.5 129 284-443 173-308 (335)
87 cd04951 GT1_WbdM_like This fam 98.6 9E-05 2E-09 73.6 28.1 130 282-444 188-327 (360)
88 cd03809 GT1_mtfB_like This fam 98.5 5.3E-05 1.2E-09 75.1 24.3 93 341-457 251-350 (365)
89 cd04955 GT1_like_6 This family 98.4 0.00057 1.2E-08 67.9 30.0 137 285-456 196-343 (363)
90 cd03804 GT1_wbaZ_like This fam 98.4 4.9E-05 1.1E-09 75.5 21.9 139 284-456 197-340 (351)
91 PF02350 Epimerase_2: UDP-N-ac 98.4 3.5E-06 7.5E-11 83.2 12.8 253 101-443 50-318 (346)
92 PF02684 LpxB: Lipid-A-disacch 98.4 0.00025 5.4E-09 70.1 24.8 206 222-461 140-358 (373)
93 PLN02275 transferase, transfer 98.4 0.0016 3.4E-08 65.4 31.3 77 341-441 284-371 (371)
94 TIGR03568 NeuC_NnaA UDP-N-acet 98.4 5.2E-05 1.1E-09 75.7 20.2 129 281-442 201-338 (365)
95 PRK15427 colanic acid biosynth 98.3 0.0016 3.5E-08 66.1 31.0 95 342-458 278-386 (406)
96 cd03792 GT1_Trehalose_phosphor 98.3 0.0016 3.5E-08 65.3 30.2 93 342-458 251-352 (372)
97 PLN02949 transferase, transfer 98.3 0.0017 3.7E-08 66.8 30.6 97 342-460 334-440 (463)
98 COG0763 LpxB Lipid A disacchar 98.3 0.00023 4.9E-09 69.0 22.3 365 9-482 1-378 (381)
99 TIGR02470 sucr_synth sucrose s 98.2 0.0023 5E-08 68.9 29.9 94 342-455 618-725 (784)
100 PRK15179 Vi polysaccharide bio 98.2 0.0047 1E-07 66.3 32.1 95 342-456 573-672 (694)
101 KOG3349 Predicted glycosyltran 98.1 6.9E-06 1.5E-10 67.7 6.8 114 283-409 5-131 (170)
102 COG0381 WecB UDP-N-acetylgluco 98.1 0.0018 3.8E-08 63.1 23.6 328 7-444 1-342 (383)
103 PLN00142 sucrose synthase 98.0 0.001 2.3E-08 71.6 22.6 95 342-456 641-749 (815)
104 PRK00654 glgA glycogen synthas 98.0 0.0068 1.5E-07 62.8 28.2 134 282-442 282-427 (466)
105 cd03806 GT1_ALG11_like This fa 98.0 0.01 2.3E-07 60.5 29.2 81 342-445 304-394 (419)
106 cd04949 GT1_gtfA_like This fam 98.0 0.0034 7.5E-08 62.8 24.2 101 342-461 260-363 (372)
107 PLN02846 digalactosyldiacylgly 98.0 0.014 3E-07 59.7 28.2 74 346-444 287-364 (462)
108 TIGR02918 accessory Sec system 97.9 0.0093 2E-07 62.1 26.2 154 283-461 320-484 (500)
109 PF00534 Glycos_transf_1: Glyc 97.8 0.00022 4.7E-09 62.9 11.3 147 280-456 13-171 (172)
110 TIGR02095 glgA glycogen/starch 97.8 0.02 4.4E-07 59.4 27.6 83 342-442 345-436 (473)
111 cd04946 GT1_AmsK_like This fam 97.8 0.00072 1.6E-08 68.7 16.2 152 282-459 230-393 (407)
112 cd04950 GT1_like_1 Glycosyltra 97.8 0.055 1.2E-06 54.3 32.2 79 342-444 253-341 (373)
113 PF13844 Glyco_transf_41: Glyc 97.8 0.0005 1.1E-08 69.4 13.7 155 279-455 282-442 (468)
114 cd03791 GT1_Glycogen_synthase_ 97.7 0.055 1.2E-06 56.2 28.7 83 342-442 350-441 (476)
115 cd03813 GT1_like_3 This family 97.7 0.015 3.2E-07 60.4 23.7 95 342-458 353-457 (475)
116 PLN02316 synthase/transferase 97.6 0.19 4.1E-06 56.1 31.8 115 342-479 899-1028(1036)
117 COG5017 Uncharacterized conser 97.6 0.00047 1E-08 56.0 8.8 111 284-412 2-123 (161)
118 cd01635 Glycosyltransferase_GT 97.4 0.034 7.3E-07 50.7 19.8 50 342-393 160-217 (229)
119 PRK15484 lipopolysaccharide 1, 97.2 0.018 4E-07 57.9 17.0 82 342-444 256-345 (380)
120 PRK10017 colanic acid biosynth 97.2 0.34 7.4E-06 49.2 30.3 179 273-484 226-424 (426)
121 PLN02501 digalactosyldiacylgly 96.8 0.69 1.5E-05 49.3 24.4 77 344-445 602-683 (794)
122 TIGR02193 heptsyl_trn_I lipopo 96.8 0.11 2.3E-06 51.0 18.2 44 11-54 1-46 (319)
123 PRK10125 putative glycosyl tra 96.8 0.61 1.3E-05 47.3 24.1 91 298-413 257-356 (405)
124 PF13692 Glyco_trans_1_4: Glyc 96.8 0.0032 6.9E-08 52.9 6.1 80 342-443 52-135 (135)
125 PRK10422 lipopolysaccharide co 96.8 0.18 3.9E-06 50.2 19.4 110 5-146 1-113 (352)
126 PF13477 Glyco_trans_4_2: Glyc 96.5 0.025 5.3E-07 47.7 10.0 100 11-146 1-104 (139)
127 PRK09814 beta-1,6-galactofuran 96.1 0.052 1.1E-06 53.5 11.0 96 342-462 206-317 (333)
128 PRK15490 Vi polysaccharide bio 96.0 2.4 5.1E-05 44.4 31.3 116 342-486 454-577 (578)
129 COG3914 Spy Predicted O-linked 96.0 0.15 3.3E-06 52.0 13.7 125 279-411 427-561 (620)
130 TIGR02201 heptsyl_trn_III lipo 95.9 1.1 2.4E-05 44.2 19.3 106 11-147 1-109 (344)
131 PF06722 DUF1205: Protein of u 95.8 0.013 2.7E-07 46.0 4.0 54 268-321 27-85 (97)
132 KOG4626 O-linked N-acetylgluco 95.0 0.32 7E-06 50.1 11.7 127 279-412 756-889 (966)
133 PF13579 Glyco_trans_4_4: Glyc 94.9 0.023 5E-07 48.7 3.3 93 25-147 6-102 (160)
134 PF13524 Glyco_trans_1_2: Glyc 94.8 0.24 5.3E-06 38.3 8.6 83 368-479 9-91 (92)
135 PRK14098 glycogen synthase; Pr 94.7 0.69 1.5E-05 48.2 13.9 80 342-441 361-449 (489)
136 TIGR02195 heptsyl_trn_II lipop 94.5 4.8 0.0001 39.5 19.1 102 11-146 1-105 (334)
137 cd03789 GT1_LPS_heptosyltransf 94.5 3 6.5E-05 39.8 17.2 44 11-54 1-46 (279)
138 PRK10964 ADP-heptose:LPS hepto 94.1 6.3 0.00014 38.5 18.8 43 10-52 1-45 (322)
139 COG0859 RfaF ADP-heptose:LPS h 93.9 6.2 0.00013 38.8 18.3 105 9-146 1-107 (334)
140 PF12000 Glyco_trans_4_3: Gkyc 93.7 0.73 1.6E-05 40.3 9.8 96 35-150 1-97 (171)
141 COG1817 Uncharacterized protei 93.3 8 0.00017 37.0 22.6 113 11-151 2-114 (346)
142 PHA01630 putative group 1 glyc 93.2 1 2.3E-05 44.2 11.4 40 349-390 196-242 (331)
143 PF08660 Alg14: Oligosaccharid 93.0 1.2 2.6E-05 39.1 10.3 112 16-147 4-127 (170)
144 PHA01633 putative glycosyl tra 92.9 3.3 7.1E-05 40.7 14.2 85 342-443 200-307 (335)
145 PRK02261 methylaspartate mutas 92.8 0.55 1.2E-05 39.5 7.5 60 7-71 1-60 (137)
146 TIGR02400 trehalose_OtsA alpha 91.1 1.3 2.9E-05 45.5 9.7 106 346-483 339-455 (456)
147 TIGR03713 acc_sec_asp1 accesso 90.1 3.8 8.2E-05 43.0 12.0 91 343-460 409-505 (519)
148 PLN02939 transferase, transfer 89.3 13 0.00028 41.6 15.4 84 342-442 836-930 (977)
149 TIGR02919 accessory Sec system 88.9 12 0.00026 38.3 14.3 125 280-444 282-412 (438)
150 PRK14099 glycogen synthase; Pr 88.8 13 0.00029 38.6 14.9 39 7-47 1-47 (485)
151 COG0003 ArsA Predicted ATPase 88.5 4.9 0.00011 39.2 10.6 42 9-50 1-43 (322)
152 COG1618 Predicted nucleotide k 88.5 3.1 6.6E-05 35.8 7.9 41 7-47 3-43 (179)
153 PF13439 Glyco_transf_4: Glyco 88.2 1.3 2.9E-05 38.2 6.2 28 20-47 12-39 (177)
154 COG4370 Uncharacterized protei 87.8 2.9 6.3E-05 39.5 8.1 89 347-453 299-389 (412)
155 PF02374 ArsA_ATPase: Anion-tr 86.6 2.4 5.3E-05 41.0 7.4 41 10-50 1-42 (305)
156 cd02067 B12-binding B12 bindin 86.5 2.5 5.4E-05 34.4 6.5 45 11-55 1-45 (119)
157 PF07429 Glyco_transf_56: 4-al 86.4 19 0.00041 35.1 13.0 84 341-442 243-332 (360)
158 cd03788 GT1_TPS Trehalose-6-Ph 86.1 2.3 4.9E-05 44.0 7.3 106 346-482 344-459 (460)
159 KOG2941 Beta-1,4-mannosyltrans 86.1 35 0.00077 33.2 26.0 125 8-152 11-140 (444)
160 COG2894 MinD Septum formation 84.2 6.4 0.00014 35.7 8.1 41 9-49 1-43 (272)
161 PRK10916 ADP-heptose:LPS hepto 84.0 9.3 0.0002 37.8 10.4 103 10-146 1-106 (348)
162 TIGR00715 precor6x_red precorr 83.4 9.6 0.00021 35.9 9.6 92 10-147 1-98 (256)
163 PF02441 Flavoprotein: Flavopr 82.0 2.2 4.8E-05 35.4 4.3 45 10-55 1-45 (129)
164 PF00551 Formyl_trans_N: Formy 81.6 15 0.00033 32.4 9.8 107 10-150 1-110 (181)
165 PRK05647 purN phosphoribosylgl 81.3 20 0.00043 32.4 10.4 35 9-46 1-37 (200)
166 PF02951 GSH-S_N: Prokaryotic 81.3 2.4 5.1E-05 34.6 4.0 38 10-47 1-41 (119)
167 COG3660 Predicted nucleoside-d 81.1 48 0.0011 31.0 17.9 97 283-387 164-271 (329)
168 PRK08305 spoVFB dipicolinate s 81.0 3.2 6.9E-05 37.2 5.1 45 7-51 3-47 (196)
169 cd03793 GT1_Glycogen_synthase_ 80.3 5.6 0.00012 41.7 7.3 79 353-443 468-552 (590)
170 PLN03063 alpha,alpha-trehalose 79.8 7.5 0.00016 43.1 8.6 101 355-486 371-479 (797)
171 COG0438 RfaG Glycosyltransfera 78.6 61 0.0013 30.7 15.0 81 342-444 256-343 (381)
172 PF02310 B12-binding: B12 bind 77.6 12 0.00025 30.4 7.3 47 10-56 1-47 (121)
173 PRK13932 stationary phase surv 77.3 26 0.00057 32.9 10.2 41 8-51 4-45 (257)
174 cd02070 corrinoid_protein_B12- 75.5 12 0.00026 33.8 7.4 49 8-56 81-129 (201)
175 PRK14098 glycogen synthase; Pr 75.5 4.9 0.00011 41.9 5.4 41 5-47 1-49 (489)
176 PRK01077 cobyrinic acid a,c-di 75.5 37 0.0008 35.0 11.8 39 8-46 2-41 (451)
177 PRK12342 hypothetical protein; 75.2 47 0.001 31.2 11.3 37 110-148 101-143 (254)
178 TIGR02370 pyl_corrinoid methyl 74.9 13 0.00029 33.3 7.4 51 8-58 83-133 (197)
179 cd07039 TPP_PYR_POX Pyrimidine 73.9 32 0.00069 29.8 9.4 30 358-389 62-97 (164)
180 PRK08057 cobalt-precorrin-6x r 73.4 7.5 0.00016 36.4 5.6 92 9-148 2-99 (248)
181 COG2910 Putative NADH-flavin r 72.0 4.9 0.00011 35.3 3.6 34 10-47 1-34 (211)
182 PF02571 CbiJ: Precorrin-6x re 71.2 9.6 0.00021 35.7 5.7 93 10-147 1-99 (249)
183 PF05159 Capsule_synth: Capsul 70.6 26 0.00057 33.1 8.8 44 343-389 183-226 (269)
184 PF01012 ETF: Electron transfe 70.0 13 0.00029 32.1 6.1 106 12-146 2-119 (164)
185 PRK07313 phosphopantothenoylcy 69.8 6.3 0.00014 34.9 4.0 45 9-54 1-45 (182)
186 cd02071 MM_CoA_mut_B12_BD meth 69.8 19 0.00041 29.4 6.7 45 11-55 1-45 (122)
187 cd01424 MGS_CPS_II Methylglyox 69.2 49 0.0011 26.3 8.9 84 21-146 10-100 (110)
188 PF02585 PIG-L: GlcNAc-PI de-N 68.8 34 0.00075 28.0 8.2 23 103-127 85-107 (128)
189 COG1703 ArgK Putative periplas 68.8 31 0.00067 33.0 8.4 42 8-49 50-91 (323)
190 PRK14501 putative bifunctional 68.7 9.1 0.0002 42.1 5.8 114 345-486 344-464 (726)
191 PRK13789 phosphoribosylamine-- 68.4 13 0.00029 37.9 6.6 35 8-47 3-37 (426)
192 PRK06849 hypothetical protein; 68.4 44 0.00096 33.6 10.4 36 8-47 3-38 (389)
193 PF02142 MGS: MGS-like domain 68.2 6.3 0.00014 30.7 3.3 84 26-145 2-94 (95)
194 PRK06029 3-octaprenyl-4-hydrox 68.1 8.7 0.00019 34.1 4.5 45 9-54 1-46 (185)
195 PRK06249 2-dehydropantoate 2-r 67.5 7.4 0.00016 37.9 4.4 38 5-47 1-38 (313)
196 PF06925 MGDG_synth: Monogalac 67.5 16 0.00035 31.8 6.1 43 105-149 76-124 (169)
197 cd00550 ArsA_ATPase Oxyanion-t 67.4 41 0.00088 31.6 9.2 43 12-55 2-45 (254)
198 COG0496 SurE Predicted acid ph 67.3 19 0.0004 33.6 6.6 39 10-51 1-40 (252)
199 PRK05973 replicative DNA helic 67.3 42 0.00092 31.1 9.0 46 12-57 67-112 (237)
200 smart00851 MGS MGS-like domain 67.1 39 0.00086 25.7 7.6 34 110-145 47-89 (90)
201 COG0541 Ffh Signal recognition 66.4 39 0.00084 34.1 8.9 51 9-59 100-150 (451)
202 PRK02797 4-alpha-L-fucosyltran 66.1 1.3E+02 0.0029 29.1 14.2 82 342-441 205-292 (322)
203 KOG2825 Putative arsenite-tran 65.9 44 0.00096 31.1 8.5 44 7-50 16-60 (323)
204 KOG0853 Glycosyltransferase [C 65.4 13 0.00028 38.3 5.6 72 373-462 381-453 (495)
205 cd02069 methionine_synthase_B1 65.4 28 0.00062 31.7 7.5 49 8-56 87-135 (213)
206 PF00448 SRP54: SRP54-type pro 65.3 75 0.0016 28.5 10.1 44 12-55 4-47 (196)
207 COG2185 Sbm Methylmalonyl-CoA 64.7 18 0.00038 30.5 5.4 41 7-47 10-50 (143)
208 TIGR01470 cysG_Nterm siroheme 64.1 66 0.0014 29.1 9.6 150 280-464 9-165 (205)
209 PF01975 SurE: Survival protei 63.9 12 0.00025 33.7 4.5 41 10-51 1-41 (196)
210 PF12146 Hydrolase_4: Putative 63.7 14 0.0003 27.6 4.2 34 10-43 16-49 (79)
211 cd01124 KaiC KaiC is a circadi 63.4 35 0.00076 29.9 7.7 45 12-56 2-46 (187)
212 TIGR01501 MthylAspMutase methy 63.2 38 0.00081 28.3 7.1 46 10-55 2-47 (134)
213 PF06258 Mito_fiss_Elm1: Mitoc 62.8 1.5E+02 0.0033 28.7 21.3 58 352-412 221-282 (311)
214 PRK13935 stationary phase surv 62.5 14 0.0003 34.6 4.9 40 10-51 1-40 (253)
215 COG1484 DnaC DNA replication p 61.9 15 0.00032 34.6 5.1 46 9-54 105-150 (254)
216 COG0552 FtsY Signal recognitio 61.1 31 0.00068 33.5 7.0 47 10-56 140-186 (340)
217 PF01075 Glyco_transf_9: Glyco 60.6 30 0.00065 32.0 7.0 99 280-387 104-208 (247)
218 cd01715 ETF_alpha The electron 60.4 1.1E+02 0.0025 26.4 10.4 40 106-147 71-113 (168)
219 PRK06988 putative formyltransf 60.4 1E+02 0.0023 29.9 10.8 33 9-46 2-34 (312)
220 cd07038 TPP_PYR_PDC_IPDC_like 60.3 63 0.0014 27.9 8.4 26 365-390 63-94 (162)
221 TIGR00087 surE 5'/3'-nucleotid 60.0 55 0.0012 30.5 8.4 40 10-52 1-41 (244)
222 PRK06718 precorrin-2 dehydroge 59.9 62 0.0014 29.2 8.6 152 274-464 5-165 (202)
223 cd01974 Nitrogenase_MoFe_beta 59.9 1.4E+02 0.003 30.6 12.1 35 109-148 368-402 (435)
224 PRK14099 glycogen synthase; Pr 59.9 15 0.00033 38.2 5.2 95 342-453 349-457 (485)
225 TIGR00639 PurN phosphoribosylg 59.5 1.3E+02 0.0028 26.8 11.7 104 10-147 1-107 (190)
226 PLN02470 acetolactate synthase 59.1 91 0.002 33.4 11.1 91 287-389 2-110 (585)
227 PF04127 DFP: DNA / pantothena 58.9 10 0.00023 33.7 3.3 39 9-47 3-53 (185)
228 PRK03359 putative electron tra 58.5 1.4E+02 0.003 28.1 10.9 38 110-149 104-147 (256)
229 TIGR00347 bioD dethiobiotin sy 57.8 1.2E+02 0.0026 25.9 10.4 27 17-43 6-32 (166)
230 cd01985 ETF The electron trans 57.0 1.3E+02 0.0028 26.3 10.1 38 107-146 80-120 (181)
231 PRK05986 cob(I)alamin adenolsy 56.9 1.5E+02 0.0032 26.6 11.6 38 8-45 21-58 (191)
232 COG2874 FlaH Predicted ATPases 56.6 57 0.0012 29.7 7.4 107 11-133 29-136 (235)
233 cd01965 Nitrogenase_MoFe_beta_ 56.0 86 0.0019 32.0 9.9 36 108-148 361-396 (428)
234 PRK09739 hypothetical protein; 56.0 28 0.0006 31.3 5.7 39 7-45 1-42 (199)
235 PRK05920 aromatic acid decarbo 55.6 20 0.00044 32.3 4.6 45 9-54 3-47 (204)
236 PRK06732 phosphopantothenate-- 54.9 16 0.00035 33.7 4.0 37 10-46 1-49 (229)
237 COG1748 LYS9 Saccharopine dehy 54.7 92 0.002 31.3 9.4 33 9-46 1-34 (389)
238 PF04464 Glyphos_transf: CDP-G 54.6 6.2 0.00013 39.4 1.3 113 342-475 251-364 (369)
239 PHA02542 41 41 helicase; Provi 54.6 1.6E+02 0.0036 30.5 11.6 41 12-52 193-233 (473)
240 PF04413 Glycos_transf_N: 3-De 54.6 48 0.001 29.4 6.9 99 11-148 22-125 (186)
241 TIGR00460 fmt methionyl-tRNA f 54.5 1E+02 0.0022 30.0 9.7 32 10-46 1-32 (313)
242 PF01210 NAD_Gly3P_dh_N: NAD-d 53.8 10 0.00023 32.6 2.4 32 11-47 1-32 (157)
243 PRK05595 replicative DNA helic 53.8 1.9E+02 0.0041 29.7 12.0 43 12-54 204-247 (444)
244 COG1797 CobB Cobyrinic acid a, 53.8 24 0.00053 35.5 5.1 38 11-48 2-41 (451)
245 cd01121 Sms Sms (bacterial rad 53.6 2.2E+02 0.0048 28.5 12.0 43 12-54 85-127 (372)
246 TIGR01425 SRP54_euk signal rec 53.6 1.6E+02 0.0034 30.1 11.0 43 10-52 100-143 (429)
247 PRK10490 sensor protein KdpD; 53.5 22 0.00047 40.3 5.5 39 9-47 24-62 (895)
248 cd01980 Chlide_reductase_Y Chl 53.4 1.2E+02 0.0027 30.8 10.5 32 112-148 344-375 (416)
249 COG1066 Sms Predicted ATP-depe 53.3 64 0.0014 32.4 7.9 44 11-55 95-138 (456)
250 TIGR02655 circ_KaiC circadian 52.9 1.7E+02 0.0036 30.5 11.6 48 11-58 265-312 (484)
251 TIGR03446 mycothiol_Mca mycoth 52.5 1.1E+02 0.0024 29.3 9.2 35 11-45 2-36 (283)
252 TIGR00064 ftsY signal recognit 52.3 1.7E+02 0.0036 27.8 10.6 42 9-50 71-113 (272)
253 PRK08760 replicative DNA helic 52.3 68 0.0015 33.3 8.5 41 12-52 232-273 (476)
254 PRK06321 replicative DNA helic 52.3 2.2E+02 0.0048 29.5 12.1 41 12-52 229-270 (472)
255 TIGR00421 ubiX_pad polyprenyl 51.8 21 0.00045 31.6 4.0 43 11-54 1-43 (181)
256 PF09314 DUF1972: Domain of un 51.7 49 0.0011 29.4 6.3 57 9-72 1-62 (185)
257 PRK00784 cobyric acid synthase 50.9 1.5E+02 0.0033 30.9 10.9 35 11-45 4-39 (488)
258 cd03412 CbiK_N Anaerobic cobal 50.9 69 0.0015 26.4 6.8 38 281-318 1-40 (127)
259 PRK10867 signal recognition pa 50.9 1.4E+02 0.003 30.6 10.2 46 10-55 100-147 (433)
260 PRK09620 hypothetical protein; 50.7 25 0.00054 32.5 4.5 38 9-46 3-52 (229)
261 TIGR02015 BchY chlorophyllide 50.5 1.7E+02 0.0038 29.8 11.0 31 11-46 287-317 (422)
262 PF04244 DPRP: Deoxyribodipyri 50.5 34 0.00074 31.5 5.3 25 22-46 47-71 (224)
263 cd07037 TPP_PYR_MenD Pyrimidin 50.4 63 0.0014 28.0 6.7 29 359-389 60-94 (162)
264 cd07035 TPP_PYR_POX_like Pyrim 50.3 1.5E+02 0.0032 25.0 9.2 29 359-389 59-93 (155)
265 TIGR02852 spore_dpaB dipicolin 50.1 28 0.0006 31.0 4.5 39 11-49 2-40 (187)
266 cd03466 Nitrogenase_NifN_2 Nit 48.8 2.1E+02 0.0045 29.2 11.4 35 108-147 362-396 (429)
267 COG0052 RpsB Ribosomal protein 48.7 2.3E+02 0.005 26.4 11.7 44 107-150 137-188 (252)
268 PRK06067 flagellar accessory p 48.6 75 0.0016 29.2 7.5 44 12-55 28-71 (234)
269 PRK10916 ADP-heptose:LPS hepto 47.7 81 0.0018 31.1 8.0 97 280-387 179-286 (348)
270 PRK13982 bifunctional SbtC-lik 47.6 42 0.00091 34.6 5.9 41 7-47 254-306 (475)
271 cd01423 MGS_CPS_I_III Methylgl 47.1 1.5E+02 0.0032 23.8 8.9 87 22-146 11-106 (116)
272 TIGR00959 ffh signal recogniti 47.0 2.1E+02 0.0046 29.2 10.8 45 10-54 99-145 (428)
273 COG2099 CobK Precorrin-6x redu 46.5 1.7E+02 0.0038 27.3 9.1 91 9-146 2-98 (257)
274 PRK07206 hypothetical protein; 46.2 76 0.0016 32.1 7.7 33 10-47 3-35 (416)
275 KOG0780 Signal recognition par 45.9 1.4E+02 0.003 29.9 8.7 45 12-56 104-148 (483)
276 COG2109 BtuR ATP:corrinoid ade 45.8 2.2E+02 0.0048 25.4 10.3 98 12-131 31-133 (198)
277 cd02065 B12-binding_like B12 b 45.4 87 0.0019 25.2 6.7 44 12-55 2-45 (125)
278 PRK02122 glucosamine-6-phospha 45.3 1.3E+02 0.0028 32.7 9.4 36 9-44 369-404 (652)
279 TIGR03600 phage_DnaB phage rep 45.3 1.9E+02 0.004 29.5 10.4 42 12-53 197-239 (421)
280 PRK14478 nitrogenase molybdenu 45.0 2.7E+02 0.0058 28.9 11.5 33 109-146 384-416 (475)
281 PRK05579 bifunctional phosphop 45.0 40 0.00086 34.1 5.3 48 7-55 4-51 (399)
282 TIGR00665 DnaB replicative DNA 44.9 1.4E+02 0.0031 30.4 9.5 43 12-54 198-241 (434)
283 PRK11823 DNA repair protein Ra 44.7 2.4E+02 0.0052 29.0 11.0 43 12-54 83-125 (446)
284 PRK07952 DNA replication prote 44.7 1.1E+02 0.0024 28.6 7.8 36 11-46 101-136 (244)
285 PF02702 KdpD: Osmosensitive K 44.6 42 0.00092 30.1 4.7 38 9-46 5-42 (211)
286 TIGR00640 acid_CoA_mut_C methy 43.9 1.2E+02 0.0026 25.2 7.2 42 9-50 2-43 (132)
287 PRK12475 thiamine/molybdopteri 43.9 1.5E+02 0.0033 29.1 9.1 33 8-45 23-56 (338)
288 PRK05632 phosphate acetyltrans 43.3 2.1E+02 0.0045 31.4 10.8 35 11-45 4-39 (684)
289 PRK07454 short chain dehydroge 43.2 1.2E+02 0.0027 27.5 8.2 39 5-46 1-39 (241)
290 COG0287 TyrA Prephenate dehydr 42.7 3E+02 0.0064 26.3 10.5 42 9-55 3-44 (279)
291 PF14336 DUF4392: Domain of un 42.7 41 0.00089 32.3 4.8 50 9-58 40-97 (291)
292 PF03446 NAD_binding_2: NAD bi 42.6 27 0.00058 30.2 3.3 31 9-44 1-31 (163)
293 PF09001 DUF1890: Domain of un 42.6 28 0.00061 28.9 3.1 34 20-53 10-43 (139)
294 TIGR01182 eda Entner-Doudoroff 42.5 2.4E+02 0.0052 25.5 9.3 36 108-146 71-106 (204)
295 PRK09165 replicative DNA helic 42.5 2.8E+02 0.006 29.1 11.2 43 12-54 220-277 (497)
296 PRK14569 D-alanyl-alanine synt 42.5 51 0.0011 31.7 5.5 38 8-45 2-43 (296)
297 PLN02240 UDP-glucose 4-epimera 42.5 39 0.00086 33.1 4.9 37 5-45 1-37 (352)
298 cd01122 GP4d_helicase GP4d_hel 42.4 24 0.00052 33.3 3.2 43 12-54 33-76 (271)
299 COG4088 Predicted nucleotide k 42.3 34 0.00073 30.9 3.7 37 10-46 2-38 (261)
300 PRK11889 flhF flagellar biosyn 42.3 2.1E+02 0.0046 29.0 9.6 40 10-49 242-281 (436)
301 COG0801 FolK 7,8-dihydro-6-hyd 42.2 51 0.0011 28.5 4.7 29 283-311 3-31 (160)
302 PRK08229 2-dehydropantoate 2-r 41.6 31 0.00067 33.9 3.9 33 9-46 2-34 (341)
303 PRK11519 tyrosine kinase; Prov 41.3 94 0.002 34.2 7.9 40 7-46 523-564 (719)
304 PRK13185 chlL protochlorophyll 41.2 46 0.001 31.4 4.9 36 11-46 3-39 (270)
305 TIGR03499 FlhF flagellar biosy 41.1 2.2E+02 0.0047 27.2 9.5 41 10-50 194-237 (282)
306 PF06180 CbiK: Cobalt chelatas 40.9 41 0.00089 31.7 4.4 41 281-321 1-44 (262)
307 PRK05636 replicative DNA helic 40.9 2.9E+02 0.0062 29.0 11.0 41 12-52 268-309 (505)
308 TIGR01007 eps_fam capsular exo 40.8 53 0.0012 29.4 5.1 39 8-46 15-55 (204)
309 PRK00207 sulfur transfer compl 40.8 61 0.0013 26.8 4.9 37 10-46 1-41 (128)
310 PF06745 KaiC: KaiC; InterPro 40.7 1.1E+02 0.0023 28.0 7.2 48 11-58 21-69 (226)
311 PRK12311 rpsB 30S ribosomal pr 40.7 3.3E+02 0.007 26.7 10.5 33 119-151 151-185 (326)
312 TIGR00521 coaBC_dfp phosphopan 40.7 44 0.00094 33.7 4.8 46 9-55 3-48 (390)
313 PF06506 PrpR_N: Propionate ca 40.7 34 0.00074 30.0 3.7 33 358-391 31-63 (176)
314 TIGR01283 nifE nitrogenase mol 40.6 4.1E+02 0.0088 27.4 12.1 35 108-147 385-419 (456)
315 PF07015 VirC1: VirC1 protein; 40.4 79 0.0017 29.2 5.9 42 11-52 3-45 (231)
316 TIGR02700 flavo_MJ0208 archaeo 40.3 44 0.00096 30.9 4.5 43 12-54 2-46 (234)
317 TIGR02113 coaC_strep phosphopa 40.2 36 0.00079 30.0 3.7 42 11-53 2-43 (177)
318 PRK07773 replicative DNA helic 40.0 1.5E+02 0.0032 33.7 9.3 43 12-54 220-263 (886)
319 PRK06522 2-dehydropantoate 2-r 40.0 40 0.00086 32.4 4.4 32 10-46 1-32 (304)
320 PRK13196 pyrrolidone-carboxyla 39.6 59 0.0013 29.6 5.1 38 9-46 1-43 (211)
321 TIGR00173 menD 2-succinyl-5-en 39.5 1.6E+02 0.0034 30.1 8.8 28 358-387 62-95 (432)
322 CHL00072 chlL photochlorophyll 39.4 53 0.0012 31.5 5.1 37 10-46 1-37 (290)
323 PRK14618 NAD(P)H-dependent gly 39.3 43 0.00094 32.7 4.5 33 9-46 4-36 (328)
324 PRK07523 gluconate 5-dehydroge 39.1 1.3E+02 0.0028 27.8 7.6 33 11-46 11-43 (255)
325 PRK13195 pyrrolidone-carboxyla 39.0 55 0.0012 30.0 4.7 38 9-46 1-43 (222)
326 PRK07819 3-hydroxybutyryl-CoA 38.7 37 0.00079 32.6 3.8 38 5-47 1-38 (286)
327 PRK05653 fabG 3-ketoacyl-(acyl 38.6 1.5E+02 0.0032 26.9 7.9 36 7-46 3-38 (246)
328 PRK00090 bioD dithiobiotin syn 38.5 3E+02 0.0065 24.8 11.2 33 12-44 2-35 (222)
329 cd01141 TroA_d Periplasmic bin 38.4 46 0.001 29.2 4.2 39 107-148 59-99 (186)
330 cd01421 IMPCH Inosine monophos 38.2 1.4E+02 0.003 26.6 6.9 38 23-71 10-47 (187)
331 KOG3062 RNA polymerase II elon 38.0 68 0.0015 29.4 5.0 38 9-46 1-39 (281)
332 PRK10416 signal recognition pa 37.7 3.7E+02 0.008 26.2 10.6 39 11-49 116-154 (318)
333 TIGR02699 archaeo_AfpA archaeo 37.6 52 0.0011 28.9 4.2 34 20-53 9-44 (174)
334 PRK12446 undecaprenyldiphospho 37.4 59 0.0013 32.2 5.2 99 282-387 3-120 (352)
335 PRK08155 acetolactate synthase 37.3 1.1E+02 0.0025 32.4 7.6 90 287-388 3-109 (564)
336 COG0467 RAD55 RecA-superfamily 37.2 1.3E+02 0.0027 28.3 7.2 48 11-58 25-72 (260)
337 KOG0202 Ca2+ transporting ATPa 37.1 6.4E+02 0.014 28.2 12.8 168 282-484 572-749 (972)
338 PRK05784 phosphoribosylamine-- 37.1 1.6E+02 0.0034 30.7 8.4 31 10-45 1-33 (486)
339 PRK12921 2-dehydropantoate 2-r 37.0 44 0.00094 32.2 4.1 31 10-45 1-31 (305)
340 cd02072 Glm_B12_BD B12 binding 37.0 1.5E+02 0.0032 24.6 6.5 45 11-55 1-45 (128)
341 PRK11064 wecC UDP-N-acetyl-D-m 36.8 47 0.001 33.8 4.4 34 8-46 2-35 (415)
342 PF00731 AIRC: AIR carboxylase 36.7 2.4E+02 0.0053 24.1 7.9 138 283-463 2-148 (150)
343 PRK07114 keto-hydroxyglutarate 36.4 2.8E+02 0.0062 25.4 9.0 47 226-293 145-192 (222)
344 cd03115 SRP The signal recogni 36.0 2.8E+02 0.0061 23.8 10.4 40 12-51 3-42 (173)
345 PF07355 GRDB: Glycine/sarcosi 36.0 69 0.0015 31.4 5.1 41 104-146 66-116 (349)
346 PLN02939 transferase, transfer 36.0 66 0.0014 36.2 5.6 41 7-47 479-525 (977)
347 PLN02285 methionyl-tRNA formyl 35.6 3.1E+02 0.0067 26.9 9.8 41 6-47 3-45 (334)
348 PRK03767 NAD(P)H:quinone oxido 35.6 68 0.0015 28.8 4.9 38 9-46 1-40 (200)
349 cd02032 Bchl_like This family 35.6 62 0.0013 30.4 4.8 37 10-46 1-37 (267)
350 PRK12743 oxidoreductase; Provi 35.1 1.6E+02 0.0035 27.2 7.6 33 10-45 2-34 (256)
351 PRK07688 thiamine/molybdopteri 35.0 3.1E+02 0.0066 27.0 9.6 34 8-46 23-57 (339)
352 cd00984 DnaB_C DnaB helicase C 34.8 1.7E+02 0.0037 26.8 7.7 44 12-55 16-60 (242)
353 PRK00094 gpsA NAD(P)H-dependen 34.6 49 0.0011 32.1 4.1 33 9-46 1-33 (325)
354 PRK12827 short chain dehydroge 34.5 1.7E+02 0.0037 26.6 7.7 33 9-45 6-38 (249)
355 TIGR01286 nifK nitrogenase mol 34.5 4.1E+02 0.0089 27.9 10.9 34 109-147 428-461 (515)
356 PF01081 Aldolase: KDPG and KH 34.4 3.3E+02 0.0071 24.4 8.9 38 108-148 71-108 (196)
357 PRK08506 replicative DNA helic 34.2 5.5E+02 0.012 26.6 13.4 42 12-53 195-236 (472)
358 COG0143 MetG Methionyl-tRNA sy 34.1 72 0.0016 33.7 5.3 39 9-47 4-52 (558)
359 PF06825 HSBP1: Heat shock fac 34.0 55 0.0012 22.5 2.9 50 431-486 2-51 (54)
360 PRK03094 hypothetical protein; 33.8 38 0.00082 25.4 2.3 21 26-46 10-30 (80)
361 cd07025 Peptidase_S66 LD-Carbo 33.7 69 0.0015 30.6 4.8 75 293-390 45-121 (282)
362 TIGR03880 KaiC_arch_3 KaiC dom 33.7 3.6E+02 0.0079 24.4 11.5 45 12-56 19-63 (224)
363 TIGR01281 DPOR_bchL light-inde 33.2 72 0.0016 30.0 4.9 34 10-43 1-34 (268)
364 COG0240 GpsA Glycerol-3-phosph 33.2 58 0.0013 31.7 4.1 34 9-47 1-34 (329)
365 PF08323 Glyco_transf_5: Starc 33.2 38 0.00082 31.6 2.9 23 25-47 21-43 (245)
366 PF06506 PrpR_N: Propionate ca 33.1 7.5 0.00016 34.2 -1.8 117 20-151 16-153 (176)
367 cd01968 Nitrogenase_NifE_I Nit 33.1 5.3E+02 0.011 26.1 11.7 34 109-147 347-380 (410)
368 PRK08979 acetolactate synthase 33.0 4.7E+02 0.01 27.9 11.5 119 283-442 412-533 (572)
369 cd06533 Glyco_transf_WecG_TagA 33.0 3.3E+02 0.0071 23.7 11.5 88 214-320 47-134 (171)
370 COG4394 Uncharacterized protei 32.9 4.5E+02 0.0097 25.2 11.2 54 344-400 239-295 (370)
371 COG2230 Cfa Cyclopropane fatty 32.9 31 0.00067 32.8 2.2 42 369-410 81-124 (283)
372 TIGR00853 pts-lac PTS system, 32.8 1.2E+02 0.0026 23.5 5.2 39 8-46 2-40 (95)
373 PRK02155 ppnK NAD(+)/NADH kina 32.7 83 0.0018 30.2 5.2 70 296-387 20-93 (291)
374 TIGR00877 purD phosphoribosyla 32.7 2.6E+02 0.0057 28.3 9.2 34 10-48 1-34 (423)
375 PF10093 DUF2331: Uncharacteri 32.6 95 0.0021 30.9 5.6 91 290-385 188-286 (374)
376 PRK05993 short chain dehydroge 32.6 72 0.0016 30.1 4.8 35 9-46 3-37 (277)
377 COG2085 Predicted dinucleotide 32.2 81 0.0018 28.6 4.6 35 9-48 1-35 (211)
378 TIGR00379 cobB cobyrinic acid 31.7 1.8E+02 0.0039 30.0 7.7 34 12-45 2-36 (449)
379 TIGR02329 propionate_PrpR prop 31.7 4.9E+02 0.011 27.5 11.0 116 20-150 36-172 (526)
380 cd01977 Nitrogenase_VFe_alpha 31.6 4.5E+02 0.0098 26.6 10.6 33 110-147 350-382 (415)
381 cd02034 CooC The accessory pro 31.6 1.1E+02 0.0024 24.7 5.0 37 11-47 1-37 (116)
382 COG2120 Uncharacterized protei 31.6 86 0.0019 29.1 4.9 39 7-45 8-46 (237)
383 TIGR03877 thermo_KaiC_1 KaiC d 31.6 4.1E+02 0.0089 24.4 11.6 46 11-56 23-68 (237)
384 COG2205 KdpD Osmosensitive K+ 31.5 58 0.0012 35.7 4.1 40 8-47 21-60 (890)
385 COG1737 RpiR Transcriptional r 31.4 1.6E+02 0.0035 28.0 7.0 88 273-394 125-217 (281)
386 PF10083 DUF2321: Uncharacteri 31.4 1.2E+02 0.0026 25.8 5.1 74 387-484 78-151 (158)
387 PRK06276 acetolactate synthase 31.1 2.9E+02 0.0063 29.6 9.5 29 358-388 62-96 (586)
388 cd00561 CobA_CobO_BtuR ATP:cor 30.9 3.5E+02 0.0076 23.3 11.9 33 11-43 4-36 (159)
389 PF02776 TPP_enzyme_N: Thiamin 30.9 1.3E+02 0.0028 26.1 5.7 31 358-390 63-99 (172)
390 PRK04148 hypothetical protein; 30.9 2.1E+02 0.0044 24.0 6.5 33 8-46 16-48 (134)
391 PRK14619 NAD(P)H-dependent gly 30.8 1.3E+02 0.0028 29.1 6.3 35 8-47 3-37 (308)
392 PRK07231 fabG 3-ketoacyl-(acyl 30.8 89 0.0019 28.6 5.0 37 7-47 3-39 (251)
393 PF05693 Glycogen_syn: Glycoge 30.7 80 0.0017 33.5 4.9 41 121-161 142-185 (633)
394 COG1763 MobB Molybdopterin-gua 30.7 90 0.002 27.0 4.5 38 9-46 1-39 (161)
395 PRK04328 hypothetical protein; 30.7 4.4E+02 0.0096 24.5 11.5 45 11-55 25-69 (249)
396 PF01075 Glyco_transf_9: Glyco 30.6 4E+02 0.0086 24.4 9.4 105 8-152 104-213 (247)
397 PRK12824 acetoacetyl-CoA reduc 30.3 2.1E+02 0.0046 25.9 7.5 34 11-47 3-36 (245)
398 TIGR00661 MJ1255 conserved hyp 30.3 1.9E+02 0.004 28.1 7.3 33 356-388 88-120 (321)
399 PRK09134 short chain dehydroge 30.2 2.8E+02 0.0061 25.6 8.4 39 5-46 4-42 (258)
400 PRK10037 cell division protein 30.2 89 0.0019 29.1 4.9 36 11-46 3-39 (250)
401 PRK06756 flavodoxin; Provision 30.1 96 0.0021 26.1 4.7 37 9-45 1-38 (148)
402 TIGR03878 thermo_KaiC_2 KaiC d 30.1 4.6E+02 0.01 24.5 12.7 38 12-49 39-76 (259)
403 PRK06079 enoyl-(acyl carrier p 30.1 93 0.002 28.9 5.0 34 10-45 7-41 (252)
404 PRK13982 bifunctional SbtC-lik 30.1 86 0.0019 32.4 5.0 47 8-55 69-115 (475)
405 PF01695 IstB_IS21: IstB-like 30.0 73 0.0016 28.0 4.0 41 9-49 47-87 (178)
406 PRK07453 protochlorophyllide o 29.9 2.5E+02 0.0054 27.1 8.2 34 9-45 5-38 (322)
407 PF07991 IlvN: Acetohydroxy ac 29.7 73 0.0016 27.6 3.7 37 9-50 4-40 (165)
408 PRK12744 short chain dehydroge 29.7 2.7E+02 0.0059 25.6 8.2 32 11-45 9-40 (257)
409 PRK12826 3-ketoacyl-(acyl-carr 29.7 2.8E+02 0.006 25.2 8.2 33 11-46 7-39 (251)
410 PRK08293 3-hydroxybutyryl-CoA 29.6 64 0.0014 30.8 3.9 34 8-46 2-35 (287)
411 TIGR00118 acolac_lg acetolacta 29.5 2.4E+02 0.0052 29.9 8.5 28 359-388 64-97 (558)
412 PF01371 Trp_repressor: Trp re 29.5 1.3E+02 0.0029 22.9 4.7 44 428-477 14-57 (87)
413 COG0504 PyrG CTP synthase (UTP 29.3 1.1E+02 0.0023 31.5 5.3 41 10-50 1-44 (533)
414 PLN02470 acetolactate synthase 29.2 5.3E+02 0.011 27.6 11.1 120 283-442 417-545 (585)
415 PRK13236 nitrogenase reductase 29.0 1.1E+02 0.0023 29.5 5.3 38 9-46 5-43 (296)
416 COG2210 Peroxiredoxin family p 28.9 1.1E+02 0.0024 25.6 4.4 41 13-53 7-47 (137)
417 PRK10499 PTS system N,N'-diace 28.7 1.4E+02 0.0029 23.8 4.9 37 8-44 2-38 (106)
418 PF03698 UPF0180: Uncharacteri 28.7 50 0.0011 24.8 2.2 22 26-47 10-31 (80)
419 COG4635 HemG Flavodoxin [Energ 28.5 98 0.0021 26.7 4.2 36 10-45 1-37 (175)
420 PRK08322 acetolactate synthase 28.5 2.2E+02 0.0047 30.1 8.0 28 359-388 63-96 (547)
421 PRK13010 purU formyltetrahydro 28.4 5.3E+02 0.012 24.7 9.8 103 300-441 159-263 (289)
422 COG3349 Uncharacterized conser 28.4 60 0.0013 33.5 3.5 33 10-47 1-33 (485)
423 PF13450 NAD_binding_8: NAD(P) 28.3 70 0.0015 22.9 3.0 21 27-47 9-29 (68)
424 PRK12724 flagellar biosynthesi 28.2 2.8E+02 0.006 28.3 8.0 43 12-54 226-269 (432)
425 PRK10818 cell division inhibit 28.2 96 0.0021 29.2 4.8 38 10-47 2-41 (270)
426 cd01840 SGNH_hydrolase_yrhL_li 28.2 2.4E+02 0.0051 23.7 6.8 38 281-319 51-88 (150)
427 PRK06935 2-deoxy-D-gluconate 3 28.2 2.6E+02 0.0057 25.7 7.8 34 11-47 16-49 (258)
428 COG0299 PurN Folate-dependent 28.2 3.5E+02 0.0077 24.2 7.7 118 283-440 53-172 (200)
429 PRK04885 ppnK inorganic polyph 28.0 38 0.00082 32.1 1.9 28 362-389 36-69 (265)
430 PTZ00119 40S ribosomal protein 27.9 1.2E+02 0.0026 28.4 5.0 55 428-482 82-138 (302)
431 PRK07710 acetolactate synthase 27.9 2.3E+02 0.0049 30.2 8.0 29 358-388 77-111 (571)
432 PRK08589 short chain dehydroge 27.9 3E+02 0.0066 25.7 8.2 33 11-46 7-39 (272)
433 PF01470 Peptidase_C15: Pyrogl 27.8 94 0.002 28.0 4.4 45 10-54 1-50 (202)
434 PRK09072 short chain dehydroge 27.8 1E+02 0.0022 28.6 4.9 37 6-46 2-38 (263)
435 COG0569 TrkA K+ transport syst 27.7 73 0.0016 29.3 3.7 33 10-47 1-33 (225)
436 COG0859 RfaF ADP-heptose:LPS h 27.7 5.8E+02 0.013 24.9 10.8 101 9-151 175-280 (334)
437 cd07062 Peptidase_S66_mccF_lik 27.7 93 0.002 30.2 4.6 73 294-389 50-124 (308)
438 PRK00885 phosphoribosylamine-- 27.6 1.9E+02 0.0042 29.3 7.2 30 10-44 1-31 (420)
439 PRK07097 gluconate 5-dehydroge 27.5 2.5E+02 0.0055 26.0 7.6 33 11-46 11-43 (265)
440 cd01075 NAD_bind_Leu_Phe_Val_D 27.5 87 0.0019 28.1 4.1 32 7-43 26-57 (200)
441 PRK00005 fmt methionyl-tRNA fo 27.4 5.7E+02 0.012 24.7 10.8 32 10-46 1-32 (309)
442 PRK06719 precorrin-2 dehydroge 27.3 1E+02 0.0022 26.5 4.3 34 8-46 12-45 (157)
443 PRK13604 luxD acyl transferase 27.3 1.2E+02 0.0026 29.4 5.2 35 9-43 36-70 (307)
444 PRK06947 glucose-1-dehydrogena 27.2 2.4E+02 0.0053 25.7 7.3 33 10-45 2-34 (248)
445 PRK14106 murD UDP-N-acetylmura 27.1 76 0.0017 32.5 4.2 36 7-47 3-38 (450)
446 PRK08277 D-mannonate oxidoredu 27.1 2.7E+02 0.0059 26.0 7.7 33 11-46 11-43 (278)
447 TIGR00345 arsA arsenite-activa 27.0 4.1E+02 0.0089 25.3 8.9 24 27-50 3-26 (284)
448 PRK08199 thiamine pyrophosphat 27.0 3.6E+02 0.0077 28.6 9.3 29 358-388 70-104 (557)
449 COG1663 LpxK Tetraacyldisaccha 26.9 3.2E+02 0.0069 26.8 7.9 32 16-47 56-87 (336)
450 PRK06835 DNA replication prote 26.7 93 0.002 30.5 4.4 43 10-52 184-226 (329)
451 CHL00175 minD septum-site dete 26.6 1.2E+02 0.0027 28.7 5.3 40 7-46 12-53 (281)
452 COG1192 Soj ATPases involved i 26.6 99 0.0022 28.8 4.6 39 10-48 2-43 (259)
453 PRK07109 short chain dehydroge 26.5 3.4E+02 0.0074 26.5 8.5 33 11-46 9-41 (334)
454 PRK09302 circadian clock prote 26.5 1.8E+02 0.0039 30.4 6.9 46 11-56 275-320 (509)
455 PRK07449 2-succinyl-5-enolpyru 26.5 1.8E+02 0.0039 30.9 7.0 29 359-389 72-106 (568)
456 PRK00881 purH bifunctional pho 26.4 3.5E+02 0.0076 28.3 8.5 48 9-71 4-51 (513)
457 PRK06276 acetolactate synthase 26.4 7.3E+02 0.016 26.5 11.6 120 282-442 409-531 (586)
458 PRK13059 putative lipid kinase 26.3 1.7E+02 0.0037 28.0 6.2 28 363-390 58-91 (295)
459 PRK06456 acetolactate synthase 26.3 3.8E+02 0.0082 28.5 9.4 29 358-388 67-101 (572)
460 PF02571 CbiJ: Precorrin-6x re 26.3 5.4E+02 0.012 24.0 9.5 104 25-147 117-225 (249)
461 TIGR00708 cobA cob(I)alamin ad 26.2 4.5E+02 0.0097 23.1 11.4 35 9-43 5-39 (173)
462 COG3028 Uncharacterized protei 26.2 1.8E+02 0.0038 25.3 5.3 57 428-493 93-149 (187)
463 TIGR01005 eps_transp_fam exopo 26.2 7.1E+02 0.015 27.6 11.8 39 8-46 544-584 (754)
464 PF10346 Con-6: Conidiation pr 26.2 1.5E+02 0.0032 18.5 3.6 29 429-457 2-30 (36)
465 PLN00198 anthocyanidin reducta 26.2 93 0.002 30.3 4.5 42 1-46 1-42 (338)
466 PRK12815 carB carbamoyl phosph 26.2 2.1E+02 0.0045 33.2 7.8 40 8-47 554-599 (1068)
467 TIGR02482 PFKA_ATP 6-phosphofr 26.1 50 0.0011 31.9 2.4 36 357-392 87-126 (301)
468 PRK08939 primosomal protein Dn 26.1 96 0.0021 30.1 4.4 44 10-53 157-200 (306)
469 PF06564 YhjQ: YhjQ protein; 26.1 1.3E+02 0.0028 28.0 5.0 35 11-45 3-38 (243)
470 COG1348 NifH Nitrogenase subun 26.0 1.6E+02 0.0035 27.3 5.3 43 9-51 1-43 (278)
471 PRK08266 hypothetical protein; 26.0 3.8E+02 0.0083 28.2 9.3 28 359-388 68-101 (542)
472 PRK06703 flavodoxin; Provision 25.9 1.2E+02 0.0026 25.6 4.6 38 9-46 1-39 (151)
473 PRK11269 glyoxylate carboligas 25.9 2.8E+02 0.0061 29.7 8.3 24 365-388 72-101 (591)
474 PRK06180 short chain dehydroge 25.8 1.1E+02 0.0025 28.7 4.9 33 11-46 5-37 (277)
475 TIGR01861 ANFD nitrogenase iro 25.8 7.8E+02 0.017 25.9 11.2 30 112-146 392-421 (513)
476 COG2099 CobK Precorrin-6x redu 25.7 3.8E+02 0.0082 25.1 7.8 37 109-147 187-228 (257)
477 PHA02754 hypothetical protein; 25.7 93 0.002 21.4 2.9 24 437-464 7-30 (67)
478 TIGR03445 mycothiol_MshB 1D-my 25.6 2.9E+02 0.0063 26.4 7.5 19 106-126 111-129 (284)
479 PLN02778 3,5-epimerase/4-reduc 25.5 1.1E+02 0.0024 29.4 4.7 32 7-43 7-39 (298)
480 PF03721 UDPG_MGDP_dh_N: UDP-g 25.4 1E+02 0.0023 27.2 4.2 32 10-46 1-32 (185)
481 PRK07236 hypothetical protein; 25.4 78 0.0017 31.7 3.8 36 6-46 3-38 (386)
482 TIGR01380 glut_syn glutathione 25.4 99 0.0021 30.0 4.4 38 10-47 1-41 (312)
483 PF08542 Rep_fac_C: Replicatio 25.3 2.9E+02 0.0063 20.6 7.1 56 427-482 34-89 (89)
484 PF05225 HTH_psq: helix-turn-h 25.2 1.1E+02 0.0024 19.9 3.2 27 429-458 1-27 (45)
485 PRK08085 gluconate 5-dehydroge 25.2 3.4E+02 0.0073 24.9 7.9 42 1-46 1-42 (254)
486 PRK08673 3-deoxy-7-phosphohept 25.1 6.7E+02 0.014 24.7 11.0 32 380-412 261-298 (335)
487 PRK14477 bifunctional nitrogen 25.1 8.1E+02 0.018 28.0 12.0 35 109-148 380-414 (917)
488 PF05728 UPF0227: Uncharacteri 25.1 1.8E+02 0.004 25.8 5.6 47 108-154 47-94 (187)
489 PRK13869 plasmid-partitioning 25.0 1.2E+02 0.0025 30.9 4.9 38 9-46 120-159 (405)
490 PRK06882 acetolactate synthase 25.0 3.2E+02 0.007 29.1 8.6 28 359-388 67-100 (574)
491 PRK11914 diacylglycerol kinase 24.9 4.5E+02 0.0097 25.2 8.9 41 7-47 6-49 (306)
492 cd00861 ProRS_anticodon_short 24.9 2.9E+02 0.0063 20.7 6.2 35 11-45 3-39 (94)
493 PRK04940 hypothetical protein; 24.8 1.6E+02 0.0034 26.1 5.0 32 120-151 60-92 (180)
494 cd01983 Fer4_NifH The Fer4_Nif 24.8 1.7E+02 0.0036 21.7 4.9 33 12-44 2-34 (99)
495 cd06318 PBP1_ABC_sugar_binding 24.7 5.2E+02 0.011 23.8 9.3 30 119-148 54-87 (282)
496 PRK13398 3-deoxy-7-phosphohept 24.7 6E+02 0.013 24.0 10.1 47 268-318 123-170 (266)
497 TIGR00416 sms DNA repair prote 24.7 1.9E+02 0.004 29.9 6.3 42 12-53 97-138 (454)
498 PRK07525 sulfoacetaldehyde ace 24.6 4.4E+02 0.0095 28.2 9.5 29 358-388 67-101 (588)
499 PRK06129 3-hydroxyacyl-CoA deh 24.6 81 0.0017 30.5 3.6 33 9-46 2-34 (308)
500 COG3516 Predicted component of 24.6 2.4E+02 0.0052 24.4 5.8 45 427-486 104-151 (169)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-68 Score=537.80 Aligned_cols=478 Identities=57% Similarity=1.049 Sum_probs=365.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcc
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 87 (496)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..........+..++++.+|+|...+++|++.+..
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 34799999999999999999999999999999999999988766655432111112349999999886656888765543
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhcccccc
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVH 167 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (496)
...........+....+.+...+.++++....+|++||+|.+++|+..+|+.+|||.+.|++++++.+.+++++......
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 166 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAH 166 (491)
T ss_pred ccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhccc
Confidence 33332234445556666777888888876335689999999999999999999999999999999888776544322211
Q ss_pred cccCCCCCccccCCCCCCcCCcccccc--C-CCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCCceEEe
Q 010988 168 ENVTSKSDYFVVPGLPDQIEMTKVQVP--L-MRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWCL 244 (496)
Q Consensus 168 ~~~~~~~~~~~~p~l~~~~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~V 244 (496)
........+..+|+++....+...+++ + .......+...+.+....++++++|||.+||+++++.+...++++++.|
T Consensus 167 ~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~V 246 (491)
T PLN02534 167 LSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCV 246 (491)
T ss_pred ccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEE
Confidence 112222334568888865557777777 2 1122333444444333456789999999999999999988776789999
Q ss_pred CcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCc
Q 010988 245 GPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTS 324 (496)
Q Consensus 245 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~ 324 (496)
||+............++......++++.+||+.+++++||||||||.....++++.+++.+|+.++++|||+++... ..
T Consensus 247 GPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~-~~ 325 (491)
T PLN02534 247 GPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGE-KH 325 (491)
T ss_pred CcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCc-cc
Confidence 99975321111111111111112356999999998899999999999999999999999999999999999998532 11
Q ss_pred hhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHHHHHh
Q 010988 325 KEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVL 404 (496)
Q Consensus 325 ~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~ 404 (496)
.+...+++|++|.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++++|.+
T Consensus 326 ~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~ 405 (491)
T PLN02534 326 SELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVL 405 (491)
T ss_pred cchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhh
Confidence 12223336888988877889999999999999999999999999999999999999999999999999999999998899
Q ss_pred hceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh
Q 010988 405 NIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNE-GGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIM 483 (496)
Q Consensus 405 G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~-~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 483 (496)
|+|+++....+..|+.+++.+..++.++|.++|+++|.+ +++++.+|+||++|++.+++|+++||||+.++++||++|.
T Consensus 406 ~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~ 485 (491)
T PLN02534 406 RIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVL 485 (491)
T ss_pred cceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 999999654333343321111248999999999999973 3457899999999999999999999999999999999998
Q ss_pred cCC
Q 010988 484 HQP 486 (496)
Q Consensus 484 ~~~ 486 (496)
.+.
T Consensus 486 ~~~ 488 (491)
T PLN02534 486 KQQ 488 (491)
T ss_pred HHh
Confidence 653
No 2
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.7e-65 Score=521.77 Aligned_cols=470 Identities=43% Similarity=0.782 Sum_probs=351.5
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhh--cCCCCeEEEEeeCCccccCCCC
Q 010988 5 GSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAM--QSGLPLQLIEIQFPYQEAGIPE 82 (496)
Q Consensus 5 ~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~i~~~~~~~~l~~ 82 (496)
|..+++||+++|+|+.||++|++.||+.|+.|||+|||++++.+...+++...... .++..+.+..++++..+.++|.
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~ 80 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE 80 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC
Confidence 34668899999999999999999999999999999999999988876665433211 1122356777777655456776
Q ss_pred CCCcccCCC------chhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHH
Q 010988 83 GSENFDMLH------STDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLL 156 (496)
Q Consensus 83 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~ 156 (496)
+.+...... .......+....+.+.+.++++++. .+||+||+|.+++|+..+|+++|||.+.|++++++.+.
T Consensus 81 g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 81 GCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 654332111 1133444455556778888888887 68999999999999999999999999999999988877
Q ss_pred HHhhhcccccccccCCCCCccccCCCCCCcCCcccccc-CCC-CChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHH
Q 010988 157 CLYNLHTSKVHENVTSKSDYFVVPGLPDQIEMTKVQVP-LMR-ENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYK 234 (496)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 234 (496)
+++...................+|++|..+.+...+++ ... ..+..+.....+...+++++++||+.+||+++.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~ 238 (482)
T PLN03007 159 ASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYK 238 (482)
T ss_pred HHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHH
Confidence 66544322111111111122347888754434444444 211 1233444455555677889999999999999888887
Q ss_pred hhcCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeE
Q 010988 235 KTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFI 314 (496)
Q Consensus 235 ~~~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i 314 (496)
......+++|||+............++.+.+..+.++.+||+++++++||||||||....+.+++.+++.+|+.++++||
T Consensus 239 ~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~fl 318 (482)
T PLN03007 239 SFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFI 318 (482)
T ss_pred hccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEE
Confidence 76656799999986532211000011111122357799999999889999999999988888999999999999999999
Q ss_pred EEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccc
Q 010988 315 WVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQF 394 (496)
Q Consensus 315 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~ 394 (496)
|+++... ...+...+ +|+++.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 319 w~~~~~~-~~~~~~~~-lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~ 396 (482)
T PLN03007 319 WVVRKNE-NQGEKEEW-LPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQF 396 (482)
T ss_pred EEEecCC-cccchhhc-CCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhh
Confidence 9998643 11011122 788999888899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHH
Q 010988 395 CNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLM 474 (496)
Q Consensus 395 ~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~ 474 (496)
.||+++++.+++|+.+...+.. +. +...+++++|+++|+++|.| ++++.||++++++++.+++|+++||||+.+
T Consensus 397 ~na~~~~~~~~~G~~~~~~~~~--~~---~~~~~~~~~l~~av~~~m~~-~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~ 470 (482)
T PLN03007 397 YNEKLVTQVLRTGVSVGAKKLV--KV---KGDFISREKVEKAVREVIVG-EEAEERRLRAKKLAEMAKAAVEEGGSSFND 470 (482)
T ss_pred hhHHHHHHhhcceeEecccccc--cc---ccCcccHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999986556777766321000 00 01258999999999999986 467899999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 010988 475 IKLLIQDIMH 484 (496)
Q Consensus 475 ~~~~~~~~~~ 484 (496)
+++|++.+.+
T Consensus 471 l~~~v~~~~~ 480 (482)
T PLN03007 471 LNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.1e-65 Score=516.85 Aligned_cols=460 Identities=33% Similarity=0.601 Sum_probs=353.7
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCC
Q 010988 1 MASEGSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGI 80 (496)
Q Consensus 1 m~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l 80 (496)
|...++.+++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...++.... ...+++++.+|++.. .++
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~-~~l 75 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSH-PSI 75 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCc-CCC
Confidence 666667788999999999999999999999999999999999999988876654321 123588888887654 478
Q ss_pred CCCCCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhh
Q 010988 81 PEGSENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYN 160 (496)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~ 160 (496)
|++.++..... .+....+......+.+.+.+++++.+.+|++||+|.+.+|+..+|+++|||.+.|++++++.+.++++
T Consensus 76 PdG~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~ 154 (477)
T PLN02863 76 PSGVENVKDLP-PSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYS 154 (477)
T ss_pred CCCCcChhhcc-hhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHH
Confidence 87765543322 13344455666667777888887643467999999999999999999999999999999999999888
Q ss_pred hcccccccc-cCCCCC---ccccCCCCCCcCCcccccc--CCC----CChHHHHHHHHhhccccceEEEcChhhhhHHHH
Q 010988 161 LHTSKVHEN-VTSKSD---YFVVPGLPDQIEMTKVQVP--LMR----ENSKDFGELVLAADMKSYGIIINTFEELESEYV 230 (496)
Q Consensus 161 ~~~~~~~~~-~~~~~~---~~~~p~l~~~~~l~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 230 (496)
+........ ...... ...+|+++. +...+++ +.. ......+.+.......++++++|||.+||++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 231 (477)
T PLN02863 155 LWREMPTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYL 231 (477)
T ss_pred HhhcccccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHH
Confidence 753221110 011111 124677665 6666666 211 112222223333345667899999999999999
Q ss_pred HHHHhhcC-CceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhC
Q 010988 231 KEYKKTKG-GKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS 309 (496)
Q Consensus 231 ~~~~~~~~-~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~ 309 (496)
+.+...++ ++++.|||+.+..........++...+..++++.+||+.+++++||||||||....+.+++.+++.+++.+
T Consensus 232 ~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~ 311 (477)
T PLN02863 232 EHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKS 311 (477)
T ss_pred HHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhC
Confidence 99987665 68999999975321100000111111112567999999998899999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCCc-hhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccC
Q 010988 310 KKPFIWVIRGGNNTS-KEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWP 388 (496)
Q Consensus 310 ~~~~i~~~~~~~~~~-~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P 388 (496)
+++|||+++... .. ..... +|+++.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 312 ~~~flw~~~~~~-~~~~~~~~--lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 312 GVHFIWCVKEPV-NEESDYSN--IPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred CCcEEEEECCCc-ccccchhh--CCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCC
Confidence 999999997542 11 11223 788898888889999999999999999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhC
Q 010988 389 LFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEET 468 (496)
Q Consensus 389 ~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~ 468 (496)
+++||+.||+++++++|+|+++.... +...+.+++.++|+++|.+ .+.||+||+++++.+++|+++|
T Consensus 389 ~~~DQ~~na~~v~~~~gvG~~~~~~~----------~~~~~~~~v~~~v~~~m~~---~~~~r~~a~~l~e~a~~Av~~g 455 (477)
T PLN02863 389 MAADQFVNASLLVDELKVAVRVCEGA----------DTVPDSDELARVFMESVSE---NQVERERAKELRRAALDAIKER 455 (477)
T ss_pred ccccchhhHHHHHHhhceeEEeccCC----------CCCcCHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999766789999995320 1246899999999999842 2499999999999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 010988 469 GSSSLMIKLLIQDIMHQ 485 (496)
Q Consensus 469 g~~~~~~~~~~~~~~~~ 485 (496)
|||..++++||+++...
T Consensus 456 GSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 456 GSSVKDLDGFVKHVVEL 472 (477)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 99999999999999754
No 4
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3.1e-63 Score=499.98 Aligned_cols=435 Identities=26% Similarity=0.431 Sum_probs=337.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCc
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLA-QNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSEN 86 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~ 86 (496)
-++||+++|+|++||++|++.||+.|+ ++|++|||++++.+...+..... ...++.++.+|.+.. .+++....
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~-~glp~~~~- 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDI-SGLVDPSA- 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccc-cCCCCCCc-
Confidence 357999999999999999999999998 78999999999987655433211 112588888886543 24441110
Q ss_pred ccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhccc-c
Q 010988 87 FDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTS-K 165 (496)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~-~ 165 (496)
.....+......+.+.+++++++...+|++||+|.+++|+..+|+++|||.+.|+++++..++++.+.+.. .
T Consensus 78 -------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 150 (481)
T PLN02992 78 -------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDK 150 (481)
T ss_pred -------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcc
Confidence 11222333444566777888876434789999999999999999999999999999999888766554321 1
Q ss_pred cccc-cCCCCCccccCCCCCCcCCcccccc--CCCC--ChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhh--c-
Q 010988 166 VHEN-VTSKSDYFVVPGLPDQIEMTKVQVP--LMRE--NSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKT--K- 237 (496)
Q Consensus 166 ~~~~-~~~~~~~~~~p~l~~~~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~--~- 237 (496)
.... ......+..+|+++. +...+++ +... .....+.+......+++++++|||.+||+++++.+... .
T Consensus 151 ~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~ 227 (481)
T PLN02992 151 DIKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLG 227 (481)
T ss_pred ccccccccCCCCcccCCCCc---cCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccc
Confidence 1110 000112345788775 5556665 2121 22233334444567788999999999999999988642 1
Q ss_pred ---CCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeE
Q 010988 238 ---GGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFI 314 (496)
Q Consensus 238 ---~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i 314 (496)
.++++.|||+....... ..++++.+||+++++++||||||||....+.+++.+++.+|+.++++||
T Consensus 228 ~~~~~~v~~VGPl~~~~~~~-----------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~fl 296 (481)
T PLN02992 228 RVARVPVYPIGPLCRPIQSS-----------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFV 296 (481)
T ss_pred cccCCceEEecCccCCcCCC-----------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEE
Confidence 25699999996532110 1256799999999889999999999999999999999999999999999
Q ss_pred EEEeCCCCCc---------------hhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHH
Q 010988 315 WVIRGGNNTS---------------KEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAIS 379 (496)
Q Consensus 315 ~~~~~~~~~~---------------~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~ 379 (496)
|++.... +. ++..++ +|++|.++.+..|+++.+|+||.+||+|+++++|||||||||++||++
T Consensus 297 W~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~-lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~ 374 (481)
T PLN02992 297 WVVRPPV-DGSACSAYFSANGGETRDNTPEY-LPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVV 374 (481)
T ss_pred EEEeCCc-ccccccccccCcccccccchhhh-CCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHH
Confidence 9996421 10 112233 889999999999999999999999999999999999999999999999
Q ss_pred hCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 010988 380 AGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQM 459 (496)
Q Consensus 380 ~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~ 459 (496)
+|||||++|+++||+.||+++++++|+|+.++.. +..++.++|.++|+++|.|+ +++.+|++++++++
T Consensus 375 ~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-----------~~~~~~~~l~~av~~vm~~~-~g~~~r~~a~~~~~ 442 (481)
T PLN02992 375 GGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP-----------KEVISRSKIEALVRKVMVEE-EGEEMRRKVKKLRD 442 (481)
T ss_pred cCCCEEecCccchhHHHHHHHHHHhCeeEEecCC-----------CCcccHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence 9999999999999999999995599999999753 12589999999999999865 78899999999999
Q ss_pred HHHHHhh--hCCChHHHHHHHHHHHh
Q 010988 460 MAKRATE--ETGSSSLMIKLLIQDIM 483 (496)
Q Consensus 460 ~~~~a~~--~~g~~~~~~~~~~~~~~ 483 (496)
.+++|++ +||||..++++||+++.
T Consensus 443 ~a~~Av~~~~GGSS~~~l~~~v~~~~ 468 (481)
T PLN02992 443 TAEMSLSIDGGGVAHESLCRVTKECQ 468 (481)
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 9999994 69999999999999985
No 5
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.2e-63 Score=497.54 Aligned_cols=433 Identities=24% Similarity=0.372 Sum_probs=335.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcc
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 87 (496)
+++||+++|+|+.||++|++.||+.|+++||+|||++++.+...+... ...+..+.+..++++.. +++|.+....
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~----~a~~~~i~~~~l~~p~~-dgLp~g~~~~ 77 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHH----NLFPDSIVFHPLTIPPV-NGLPAGAETT 77 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcc----cCCCCceEEEEeCCCCc-cCCCCCcccc
Confidence 457999999999999999999999999999999999998776655432 11122477777765532 3677664422
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhcccccc
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVH 167 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (496)
.... ......+....+.+.+.+++++++ .++|+||+| ++.|+..+|+.+|||++.|+++++..+. +.+...
T Consensus 78 ~~l~-~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~---- 148 (442)
T PLN02208 78 SDIP-ISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG---- 148 (442)
T ss_pred cchh-HHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----
Confidence 1111 122334555566788889999988 689999999 6789999999999999999999987653 333221
Q ss_pred cccCCCCCccccCCCCCC-cCCcccccc-CCC--CChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCCceEE
Q 010988 168 ENVTSKSDYFVVPGLPDQ-IEMTKVQVP-LMR--ENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWC 243 (496)
Q Consensus 168 ~~~~~~~~~~~~p~l~~~-~~l~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~ 243 (496)
.... ..+|++|.. +.++..+++ +.. ..+..+.++..+...+++++++|||.+||+++++++.+.++++++.
T Consensus 149 ~~~~-----~~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~ 223 (442)
T PLN02208 149 GKLG-----VPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLL 223 (442)
T ss_pred cccC-----CCCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEE
Confidence 1100 124777652 234555555 211 1123333344445667899999999999999999998887789999
Q ss_pred eCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCC
Q 010988 244 LGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNT 323 (496)
Q Consensus 244 VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 323 (496)
|||+....... ...++++.+||+.+++++||||||||....+.+++.+++.+++..+.+++|+..... .
T Consensus 224 vGpl~~~~~~~----------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~-~ 292 (442)
T PLN02208 224 TGPMFPEPDTS----------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPR-G 292 (442)
T ss_pred EeecccCcCCC----------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCC-c
Confidence 99997642200 114678999999998899999999999998999999999988888899999887541 1
Q ss_pred chhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHHHHH
Q 010988 324 SKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQV 403 (496)
Q Consensus 324 ~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~ 403 (496)
..+...+ +|++|.++....|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.
T Consensus 293 ~~~~~~~-lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~ 371 (442)
T PLN02208 293 SSTVQEG-LPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEE 371 (442)
T ss_pred ccchhhh-CCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHH
Confidence 1111223 899999998899999999999999999999999999999999999999999999999999999999998655
Q ss_pred hhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 010988 404 LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEG-GERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDI 482 (496)
Q Consensus 404 ~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~-~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 482 (496)
+|+|+.++..+ ++.+++++|+++|+++|+|+ ++++.+|++++++++.+. ++|||+.++++||+++
T Consensus 372 ~g~gv~~~~~~----------~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 372 FEVSVEVSREK----------TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEEL 437 (442)
T ss_pred hceeEEecccc----------CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHH
Confidence 99999997541 11489999999999999876 357889999999999973 4789999999999998
Q ss_pred hcC
Q 010988 483 MHQ 485 (496)
Q Consensus 483 ~~~ 485 (496)
.++
T Consensus 438 ~~~ 440 (442)
T PLN02208 438 QEY 440 (442)
T ss_pred HHh
Confidence 653
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.4e-63 Score=497.42 Aligned_cols=437 Identities=27% Similarity=0.434 Sum_probs=327.7
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCC
Q 010988 1 MASEGSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGI 80 (496)
Q Consensus 1 m~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l 80 (496)
|+++ .++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+... .. ....++++..+| +++
T Consensus 1 ~~~~--~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip-----~gl 66 (451)
T PLN02410 1 MEEK--PARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIP-----ESL 66 (451)
T ss_pred CCcC--CCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCC-----CCC
Confidence 6655 578899999999999999999999999999999999999976421 10 011258887776 356
Q ss_pred CCCCCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhc----CCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHH
Q 010988 81 PEGSENFDMLHSTDLLFNFFKSLTLLQLPLENLLKEL----APKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLL 156 (496)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~ 156 (496)
|++.... .. ....+......+...++++++.. ..++++||+|.++.|+..+|+++|||.+.|+++++..+.
T Consensus 67 p~~~~~~--~~---~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~ 141 (451)
T PLN02410 67 PESDFKN--LG---PIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFV 141 (451)
T ss_pred Ccccccc--cC---HHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHH
Confidence 6531111 11 11122222223444555555442 235799999999999999999999999999999999887
Q ss_pred HHhhhcccccc----cccC-CCCCccccCCCCCCcCCcccccc-CC-C--CChHHHHHHHHhhccccceEEEcChhhhhH
Q 010988 157 CLYNLHTSKVH----ENVT-SKSDYFVVPGLPDQIEMTKVQVP-LM-R--ENSKDFGELVLAADMKSYGIIINTFEELES 227 (496)
Q Consensus 157 ~~~~~~~~~~~----~~~~-~~~~~~~~p~l~~~~~l~~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~l~~s~~~le~ 227 (496)
++.++...... +.-. .......+|+++. +..++++ +. . ..+...+.... ...+++++++|||++||+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~ 217 (451)
T PLN02410 142 CRSVFDKLYANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLES 217 (451)
T ss_pred HHHHHHHHHhccCCCCccccccCccccCCCCCC---CChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhH
Confidence 77654221100 1000 0112335777765 5555555 21 1 11122222221 245788999999999999
Q ss_pred HHHHHHHhhcCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHH
Q 010988 228 EYVKEYKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLE 307 (496)
Q Consensus 228 ~~~~~~~~~~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~ 307 (496)
++++.+....+++++.|||+....... ...+....++.+||+++++++||||||||....+.+++.+++.+|+
T Consensus 218 ~~~~~l~~~~~~~v~~vGpl~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe 290 (451)
T PLN02410 218 SSLSRLQQQLQIPVYPIGPLHLVASAP-------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLD 290 (451)
T ss_pred HHHHHHHhccCCCEEEecccccccCCC-------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHH
Confidence 999999876667899999997542110 1111123468899999988999999999999999999999999999
Q ss_pred hCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEecc
Q 010988 308 ASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITW 387 (496)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 387 (496)
.++++|||+++.......+.... +|++|.++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 291 ~s~~~FlWv~r~~~~~~~~~~~~-lp~~f~er~-~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~ 368 (451)
T PLN02410 291 SSNQQFLWVIRPGSVRGSEWIES-LPKEFSKII-SGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICK 368 (451)
T ss_pred hcCCCeEEEEccCcccccchhhc-CChhHHHhc-cCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEec
Confidence 99999999998431011111111 788888876 4667888999999999999999999999999999999999999999
Q ss_pred CCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhh
Q 010988 388 PLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEE 467 (496)
Q Consensus 388 P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~ 467 (496)
|+++||+.||+++++.+|+|+.+.. .++.++|.++|+++|.+++ ++.||++++++++.+++|+++
T Consensus 369 P~~~DQ~~na~~~~~~~~~G~~~~~--------------~~~~~~v~~av~~lm~~~~-~~~~r~~a~~l~~~~~~a~~~ 433 (451)
T PLN02410 369 PFSSDQKVNARYLECVWKIGIQVEG--------------DLDRGAVERAVKRLMVEEE-GEEMRKRAISLKEQLRASVIS 433 (451)
T ss_pred cccccCHHHHHHHHHHhCeeEEeCC--------------cccHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999645599999973 4899999999999998754 789999999999999999999
Q ss_pred CCChHHHHHHHHHHHhc
Q 010988 468 TGSSSLMIKLLIQDIMH 484 (496)
Q Consensus 468 ~g~~~~~~~~~~~~~~~ 484 (496)
||||..++++||+.+..
T Consensus 434 gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 434 GGSSHNSLEEFVHFMRT 450 (451)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999863
No 7
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.4e-62 Score=489.12 Aligned_cols=436 Identities=26% Similarity=0.409 Sum_probs=336.6
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCC
Q 010988 6 SSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSE 85 (496)
Q Consensus 6 ~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~ 85 (496)
...++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+. . ....++.+..++++.. +++|.+.+
T Consensus 2 ~~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~--~~~~~~~v~~~~~p~~-~glp~g~e 76 (453)
T PLN02764 2 GGLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--N--LFPHNIVFRSVTVPHV-DGLPVGTE 76 (453)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--c--cCCCCceEEEEECCCc-CCCCCccc
Confidence 36689999999999999999999999999999999999999876655431 1 0111344444444432 36776654
Q ss_pred cccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhcccc
Q 010988 86 NFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSK 165 (496)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (496)
...... ......+..+.+.+.+.+.+++++ .+||+||+| ++.|+..+|+.+|||.+.|+++++..+.++...
T Consensus 77 ~~~~~~-~~~~~~~~~a~~~~~~~~~~~l~~--~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~---- 148 (453)
T PLN02764 77 TVSEIP-VTSADLLMSAMDLTRDQVEVVVRA--VEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLVP---- 148 (453)
T ss_pred ccccCC-hhHHHHHHHHHHHhHHHHHHHHHh--CCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhcc----
Confidence 333222 123444556666778889999988 578999999 588999999999999999999999887776531
Q ss_pred cccccCCCCCccccCCCCCC-cCCcccccc-C-C--C-C---ChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhh
Q 010988 166 VHENVTSKSDYFVVPGLPDQ-IEMTKVQVP-L-M--R-E---NSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKT 236 (496)
Q Consensus 166 ~~~~~~~~~~~~~~p~l~~~-~~l~~~~~~-~-~--~-~---~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 236 (496)
...+. ..+|++|.. +.++..+++ + . . . ....+..++.....+++++++|||.+||+++++++...
T Consensus 149 -~~~~~-----~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~ 222 (453)
T PLN02764 149 -GGELG-----VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH 222 (453)
T ss_pred -cccCC-----CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh
Confidence 01110 123666631 123334433 1 1 0 1 13345555545567788999999999999999999775
Q ss_pred cCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEE
Q 010988 237 KGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWV 316 (496)
Q Consensus 237 ~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~ 316 (496)
.+++++.|||+....... ...++++.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|+
T Consensus 223 ~~~~v~~VGPL~~~~~~~----------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv 292 (453)
T PLN02764 223 CRKKVLLTGPVFPEPDKT----------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVA 292 (453)
T ss_pred cCCcEEEeccCccCcccc----------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 456899999996532100 0125679999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchh
Q 010988 317 IRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCN 396 (496)
Q Consensus 317 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~n 396 (496)
++... ..++...+ +|++|.++....++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 293 ~r~~~-~~~~~~~~-lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~n 370 (453)
T PLN02764 293 VKPPR-GSSTIQEA-LPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLN 370 (453)
T ss_pred EeCCC-CCcchhhh-CCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHH
Confidence 98532 11112233 89999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 010988 397 EKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEG-GERENRRKRAREFQMMAKRATEETGSSSLMI 475 (496)
Q Consensus 397 a~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~-~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~ 475 (496)
|+++++.+|+|+.+..++ ...++.++|+++|+++|+++ ++++.+|++++++++.+ ++||||..++
T Consensus 371 a~~l~~~~g~gv~~~~~~----------~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~----~~~GSS~~~l 436 (453)
T PLN02764 371 TRLLSDELKVSVEVAREE----------TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL----ASPGLLTGYV 436 (453)
T ss_pred HHHHHHHhceEEEecccc----------CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH----HhcCCHHHHH
Confidence 999965689998875320 01489999999999999876 45788999999999998 4679999999
Q ss_pred HHHHHHHhcCC
Q 010988 476 KLLIQDIMHQP 486 (496)
Q Consensus 476 ~~~~~~~~~~~ 486 (496)
++||++++..-
T Consensus 437 ~~lv~~~~~~~ 447 (453)
T PLN02764 437 DNFIESLQDLV 447 (453)
T ss_pred HHHHHHHHHhc
Confidence 99999997653
No 8
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.8e-62 Score=496.91 Aligned_cols=447 Identities=29% Similarity=0.503 Sum_probs=338.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCcchh----hHHHHHHhhhcCCCCeEEEEeeCCccccC
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNG----AAITIVTTPANAA----RFKTVVARAMQSGLPLQLIEIQFPYQEAG 79 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rG----H~Vt~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~i~~~~~~~~ 79 (496)
.+.||+++|+|++||++|++.||+.|+.+| +.|||++++.+.+ .+..........+..+.++.+|...
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---- 77 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE---- 77 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC----
Confidence 456999999999999999999999999997 7999999876532 3333322111112258888887432
Q ss_pred CCCCCCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHh
Q 010988 80 IPEGSENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLY 159 (496)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~ 159 (496)
++.+.+. ....+......+.+.+++++++...++++||+|.+++|+..+|+++|||.+.|+++++..+.+++
T Consensus 78 ~p~~~e~--------~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~ 149 (480)
T PLN00164 78 PPTDAAG--------VEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALML 149 (480)
T ss_pred CCCcccc--------HHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHh
Confidence 2222211 11222334446677788888763235699999999999999999999999999999999988877
Q ss_pred hhcccccc-c-ccCCCCCccccCCCCCCcCCcccccc--CCCC--ChHHHHHHHHhhccccceEEEcChhhhhHHHHHHH
Q 010988 160 NLHTSKVH-E-NVTSKSDYFVVPGLPDQIEMTKVQVP--LMRE--NSKDFGELVLAADMKSYGIIINTFEELESEYVKEY 233 (496)
Q Consensus 160 ~~~~~~~~-~-~~~~~~~~~~~p~l~~~~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 233 (496)
++...... . .......+..+|+++. +...+++ +... .....+....+...+++++++|||.+||+++++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 226 (480)
T PLN00164 150 RLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAI 226 (480)
T ss_pred hhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHH
Confidence 76432110 0 0011012234788875 6667776 2211 11222222334456788999999999999999998
Q ss_pred Hhhc------CCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHH
Q 010988 234 KKTK------GGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLE 307 (496)
Q Consensus 234 ~~~~------~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~ 307 (496)
.... .++++.|||+....... ..+..++++.+||+.+++++||||||||....+.+++.+++.+|+
T Consensus 227 ~~~~~~~~~~~~~v~~vGPl~~~~~~~--------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~ 298 (480)
T PLN00164 227 ADGRCTPGRPAPTVYPIGPVISLAFTP--------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLE 298 (480)
T ss_pred HhccccccCCCCceEEeCCCccccccC--------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 7642 15799999997432110 001135689999999988999999999998899999999999999
Q ss_pred hCCCCeEEEEeCCCCC-------chhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHh
Q 010988 308 ASKKPFIWVIRGGNNT-------SKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISA 380 (496)
Q Consensus 308 ~~~~~~i~~~~~~~~~-------~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~ 380 (496)
.++++|||+++... . ..+...+ +|+++.++....++++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 299 ~s~~~flWv~~~~~-~~~~~~~~~~~~~~~-lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~ 376 (480)
T PLN00164 299 RSGHRFLWVLRGPP-AAGSRHPTDADLDEL-LPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWH 376 (480)
T ss_pred HcCCCEEEEEcCCc-ccccccccccchhhh-CChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHc
Confidence 99999999997532 1 0112233 7889988888889999999999999999999999999999999999999
Q ss_pred CCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHHH
Q 010988 381 GVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGE-RENRRKRAREFQM 459 (496)
Q Consensus 381 GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~-~~~~~~~a~~l~~ 459 (496)
|||||++|+++||+.||+++++++|+|+.+...+ .++..++.++|.++|+++|.|++| ++.+|++|+++++
T Consensus 377 GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~--------~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~ 448 (480)
T PLN00164 377 GVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDR--------KRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKA 448 (480)
T ss_pred CCCEEeCCccccchhHHHHHHHHhCeEEEecccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 9999999999999999988756789999986431 001247999999999999998774 8899999999999
Q ss_pred HHHHHhhhCCChHHHHHHHHHHHhcCCC
Q 010988 460 MAKRATEETGSSSLMIKLLIQDIMHQPH 487 (496)
Q Consensus 460 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 487 (496)
++++|+++||||++++++||+++...+-
T Consensus 449 ~~~~a~~~gGSS~~~l~~~v~~~~~~~~ 476 (480)
T PLN00164 449 ACRKAVEEGGSSYAALQRLAREIRHGAV 476 (480)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999987654
No 9
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4e-62 Score=488.96 Aligned_cols=439 Identities=26% Similarity=0.456 Sum_probs=336.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHH--HHHHhhhcCCCCeEEEEeeCCccccCC-CC
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQN-GAAITIVTTPANAARFK--TVVARAMQSGLPLQLIEIQFPYQEAGI-PE 82 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~i~~~~~~~~l-~~ 82 (496)
|++.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+. ....... ...++.++.+|++.. +++ +.
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~-~~l~~~ 78 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDV-DNLVEP 78 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCcc-ccCCCC
Confidence 356799999999999999999999999987 99999998886554331 1111110 112588888885542 133 11
Q ss_pred CCCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCC-eEEEecchHHHHHHHhhh
Q 010988 83 GSENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIP-RISFHGFSCFCLLCLYNL 161 (496)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP-~v~~~~~~~~~~~~~~~~ 161 (496)
+ . .....+......+...+++++++...++++||+|.+++|+..+|+++||| .+.++++.+..+.+++++
T Consensus 79 ~------~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l 149 (470)
T PLN03015 79 D------A---TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYL 149 (470)
T ss_pred C------c---cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhh
Confidence 1 0 22234455555677888888887434789999999999999999999999 588888888777676665
Q ss_pred cccc-cccc-cCCCCCccccCCCCCCcCCcccccc--CCCC--C-hHHHHHHHHhhccccceEEEcChhhhhHHHHHHHH
Q 010988 162 HTSK-VHEN-VTSKSDYFVVPGLPDQIEMTKVQVP--LMRE--N-SKDFGELVLAADMKSYGIIINTFEELESEYVKEYK 234 (496)
Q Consensus 162 ~~~~-~~~~-~~~~~~~~~~p~l~~~~~l~~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 234 (496)
+... .... ......+..+|+++. +...+++ +.+. . +..+.+.. +...+++++++|||++||+++++.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~a~gvlvNTf~eLE~~~~~~l~ 225 (470)
T PLN03015 150 PVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRSDQQYKECVRSG-LEVPMSDGVLVNTWEELQGNTLAALR 225 (470)
T ss_pred hhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCCcHHHHHHHHHH-HhcccCCEEEEechHHHhHHHHHHHH
Confidence 3211 1111 001112356888876 7777777 2221 1 23333333 34678999999999999999999987
Q ss_pred hhc------CCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHh
Q 010988 235 KTK------GGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA 308 (496)
Q Consensus 235 ~~~------~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~ 308 (496)
..+ .+.++.|||+....... ..++++.+||+++++++||||||||....+.+++.+++.+|+.
T Consensus 226 ~~~~~~~~~~~~v~~VGPl~~~~~~~-----------~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~ 294 (470)
T PLN03015 226 EDMELNRVMKVPVYPIGPIVRTNVHV-----------EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLEL 294 (470)
T ss_pred hhcccccccCCceEEecCCCCCcccc-----------cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHh
Confidence 642 25699999997421100 0245799999999889999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCC--------chhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHh
Q 010988 309 SKKPFIWVIRGGNNT--------SKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISA 380 (496)
Q Consensus 309 ~~~~~i~~~~~~~~~--------~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~ 380 (496)
++++|||+++... . .++..++ +|+++.++....++++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 295 s~~~FlWv~r~~~-~~~~~~~~~~~~~~~~-lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~ 372 (470)
T PLN03015 295 SGQRFVWVLRRPA-SYLGASSSDDDQVSAS-LPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTK 372 (470)
T ss_pred CCCcEEEEEecCc-cccccccccccchhhc-CChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHc
Confidence 9999999997431 1 1112334 8899999888888999999999999999999999999999999999999
Q ss_pred CCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHH
Q 010988 381 GVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNE-GGERENRRKRAREFQM 459 (496)
Q Consensus 381 GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~-~~~~~~~~~~a~~l~~ 459 (496)
|||||++|+++||+.||+++++.+|+|+++.... .+..++.++|+++|+++|.+ +++++.+|+||+++++
T Consensus 373 GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~---------~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~ 443 (470)
T PLN03015 373 GVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELP---------SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRV 443 (470)
T ss_pred CCCEEecccccchHHHHHHHHHHhCeeEEecccc---------cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Confidence 9999999999999999999977999999995210 01258999999999999963 2567899999999999
Q ss_pred HHHHHhhhCCChHHHHHHHHHHH
Q 010988 460 MAKRATEETGSSSLMIKLLIQDI 482 (496)
Q Consensus 460 ~~~~a~~~~g~~~~~~~~~~~~~ 482 (496)
++++|+++||||+.++++|++++
T Consensus 444 ~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 444 SSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHHHhcCCCcHHHHHHHHHHhc
Confidence 99999999999999999999886
No 10
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=6.1e-62 Score=491.92 Aligned_cols=453 Identities=28% Similarity=0.482 Sum_probs=332.2
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH--HHhh--hcCCC-CeEEEEeeCCc
Q 010988 1 MASEGSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV--VARA--MQSGL-PLQLIEIQFPY 75 (496)
Q Consensus 1 m~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~--~~~~--~~~~~-~i~~~~i~~~~ 75 (496)
|.++ ....||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+. .... ...+. .++|..+|
T Consensus 1 ~~~~--~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p--- 75 (480)
T PLN02555 1 MESE--SSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE--- 75 (480)
T ss_pred CCCC--CCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC---
Confidence 5555 5578999999999999999999999999999999999999766655421 0000 00011 13443333
Q ss_pred cccCCCCCCCcccCCCchhhHHHHHHHH-HhhhHHHHHHHHhcC--CC-CeEEEEcCCCcchHHHHHhcCCCeEEEecch
Q 010988 76 QEAGIPEGSENFDMLHSTDLLFNFFKSL-TLLQLPLENLLKELA--PK-PSCIVSDMCYPWTVDTAARFNIPRISFHGFS 151 (496)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~--~~-pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~ 151 (496)
+++|++.+.. . +.. .+.... ..+.+.++++++... .+ +++||+|.++.|+..+|+++|||.+.|++++
T Consensus 76 --dglp~~~~~~---~--~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~ 147 (480)
T PLN02555 76 --DGWAEDDPRR---Q--DLD-LYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQS 147 (480)
T ss_pred --CCCCCCcccc---c--CHH-HHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeeccc
Confidence 4566543311 1 111 222222 245566666666421 24 4999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccc-cccccCCCCCccccCCCCCCcCCcccccc--CCC-CC---hHHHHHHHHhhccccceEEEcChhh
Q 010988 152 CFCLLCLYNLHTSK-VHENVTSKSDYFVVPGLPDQIEMTKVQVP--LMR-EN---SKDFGELVLAADMKSYGIIINTFEE 224 (496)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~l~~~~~l~~~~~~--~~~-~~---~~~~~~~~~~~~~~~~~~l~~s~~~ 224 (496)
+..+.+++++.... ..........+..+|++|. +...+++ +.. .. +...+.+..+...+++++++|||.+
T Consensus 148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~e 224 (480)
T PLN02555 148 CACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQE 224 (480)
T ss_pred HHHHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHH
Confidence 99988877763211 1111111112345888876 6667777 221 11 1222223334456788999999999
Q ss_pred hhHHHHHHHHhhcCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHH
Q 010988 225 LESEYVKEYKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGL 304 (496)
Q Consensus 225 le~~~~~~~~~~~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~ 304 (496)
||+++++.+.... + ++.|||+......... ..+...+..++++.+||+++++++||||||||+...+.+++.+++.
T Consensus 225 LE~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~ 300 (480)
T PLN02555 225 LEKEIIDYMSKLC-P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAY 300 (480)
T ss_pred HhHHHHHHHhhCC-C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHH
Confidence 9999999887644 4 9999999654221100 0111112345789999999988899999999999999999999999
Q ss_pred HHHhCCCCeEEEEeCCCCCchhh-hhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCc
Q 010988 305 GLEASKKPFIWVIRGGNNTSKEI-QEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVP 383 (496)
Q Consensus 305 a~~~~~~~~i~~~~~~~~~~~~~-~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP 383 (496)
+++.++++|||+++... ...+. ..+ +|+++.++. .+|+++.+|+||.+||.|+++++|||||||||++||+++|||
T Consensus 301 ~l~~~~~~flW~~~~~~-~~~~~~~~~-lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP 377 (480)
T PLN02555 301 GVLNSGVSFLWVMRPPH-KDSGVEPHV-LPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVP 377 (480)
T ss_pred HHHhcCCeEEEEEecCc-ccccchhhc-CChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCC
Confidence 99999999999987431 10001 112 777776654 567888899999999999999999999999999999999999
Q ss_pred EeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 010988 384 MITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKR 463 (496)
Q Consensus 384 ~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~ 463 (496)
||++|+++||+.||+++++.+|+|+++...+ + .+..++.++|.++|+++|++ ++++.+|+||++|++++++
T Consensus 378 ~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~------~--~~~~v~~~~v~~~v~~vm~~-~~g~~~r~ra~~l~~~a~~ 448 (480)
T PLN02555 378 VVCFPQWGDQVTDAVYLVDVFKTGVRLCRGE------A--ENKLITREEVAECLLEATVG-EKAAELKQNALKWKEEAEA 448 (480)
T ss_pred EEeCCCccccHHHHHHHHHHhCceEEccCCc------c--ccCcCcHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975669999995310 0 01258999999999999986 4678999999999999999
Q ss_pred HhhhCCChHHHHHHHHHHHhcC
Q 010988 464 ATEETGSSSLMIKLLIQDIMHQ 485 (496)
Q Consensus 464 a~~~~g~~~~~~~~~~~~~~~~ 485 (496)
|+++||||+.++++||+++...
T Consensus 449 A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 449 AVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HhcCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999754
No 11
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.4e-62 Score=488.36 Aligned_cols=430 Identities=26% Similarity=0.449 Sum_probs=326.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCC-C
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGS-E 85 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~-~ 85 (496)
+++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+.+.+... ...+++++.+| +++|++. .
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~ 71 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFS 71 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCcccc
Confidence 6678999999999999999999999999999999999999876544221 12358888886 4666532 2
Q ss_pred cccCCCchhhHHHHHHHHHhhhHHHHHHHHhc--CCCC-eEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhc
Q 010988 86 NFDMLHSTDLLFNFFKSLTLLQLPLENLLKEL--APKP-SCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLH 162 (496)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~p-DlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 162 (496)
... .....+......+.+.+++++++. ..+| ++||+|.+++|+..+|+++|||.+.|+++++..+.++++..
T Consensus 72 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~ 146 (449)
T PLN02173 72 SAG-----SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSY 146 (449)
T ss_pred ccc-----CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHH
Confidence 111 112222223335566777777653 1245 99999999999999999999999999999888876655421
Q ss_pred ccccccccCCCCCccccCCCCCCcCCcccccc--CCC--C--ChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhh
Q 010988 163 TSKVHENVTSKSDYFVVPGLPDQIEMTKVQVP--LMR--E--NSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKT 236 (496)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~l~~~~~l~~~~~~--~~~--~--~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 236 (496)
.. . . .....+|++|. +..++++ +.. . .....+.+..+...+++++++|||.+||+++++.+++.
T Consensus 147 ~~---~---~-~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 216 (449)
T PLN02173 147 IN---N---G-SLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV 216 (449)
T ss_pred hc---c---C-CccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc
Confidence 10 0 1 12233677775 5666776 221 1 12222223334567788999999999999999988653
Q ss_pred cCCceEEeCcCcCCCcCC-chhhhhCC--CCc--CChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCC
Q 010988 237 KGGKVWCLGPVSLCNKQD-IDKAERGK--KAA--IDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKK 311 (496)
Q Consensus 237 ~~~~v~~VGpl~~~~~~~-~~~~~~~~--~~~--~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~ 311 (496)
++++.|||+.+..... ......+. ..| ..++++.+||+.++++++|||||||....+.+++.+++.++ .+.
T Consensus 217 --~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 217 --CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred --CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 3699999996431100 00000010 111 12446999999998899999999999999999999999999 677
Q ss_pred CeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCcc
Q 010988 312 PFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFG 391 (496)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~ 391 (496)
+|||++.... . .. +|+++.++..++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 293 ~flWvvr~~~-~----~~--lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~ 365 (449)
T PLN02173 293 SYLWVVRASE-E----SK--LPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWT 365 (449)
T ss_pred CEEEEEeccc-h----hc--ccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchh
Confidence 8999997543 1 11 777887777678999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCCh
Q 010988 392 DQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSS 471 (496)
Q Consensus 392 DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~ 471 (496)
||+.||+++++.+|+|+.+..++ .+..++.++|.++|+++|+|+ +++.+|++|+++++++++|+++||||
T Consensus 366 DQ~~Na~~v~~~~g~Gv~v~~~~---------~~~~~~~e~v~~av~~vm~~~-~~~~~r~~a~~~~~~a~~Av~~gGSS 435 (449)
T PLN02173 366 DQPMNAKYIQDVWKVGVRVKAEK---------ESGIAKREEIEFSIKEVMEGE-KSKEMKENAGKWRDLAVKSLSEGGST 435 (449)
T ss_pred cchHHHHHHHHHhCceEEEeecc---------cCCcccHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 99999999975569999986531 011479999999999999864 46899999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 010988 472 SLMIKLLIQDIM 483 (496)
Q Consensus 472 ~~~~~~~~~~~~ 483 (496)
..++++||+++.
T Consensus 436 ~~~l~~~v~~~~ 447 (449)
T PLN02173 436 DININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHHhc
Confidence 999999999884
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-61 Score=489.89 Aligned_cols=442 Identities=27% Similarity=0.451 Sum_probs=326.2
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCcccc
Q 010988 1 MASEGSSQQPHFVLFPFLAQGHMIPMIDIGRL--LAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEA 78 (496)
Q Consensus 1 m~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~--L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~ 78 (496)
|+.- +.++.||+++|+|++||++|++.||+. |++||++|||++++.+.+.+... . .....+++..+| +
T Consensus 1 ~~~~-~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~---~~~~~~~~~~~~-----~ 70 (456)
T PLN02210 1 MGSS-EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-E---KPRRPVDLVFFS-----D 70 (456)
T ss_pred CCCc-CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-c---CCCCceEEEECC-----C
Confidence 4433 356789999999999999999999999 56999999999999876544221 0 011234544443 3
Q ss_pred CCCCCCCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHH
Q 010988 79 GIPEGSENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCL 158 (496)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~ 158 (496)
++|++... .....+....+.+.+.+++++++ .+||+||+|.++.|+..+|+++|||.+.|+++++..+..+
T Consensus 71 glp~~~~~-------~~~~~~~~~~~~~~~~l~~~l~~--~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~ 141 (456)
T PLN02210 71 GLPKDDPR-------APETLLKSLNKVGAKNLSKIIEE--KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVY 141 (456)
T ss_pred CCCCCccc-------CHHHHHHHHHHhhhHHHHHHHhc--CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHH
Confidence 56655321 11122222223456678888887 6899999999999999999999999999999999888776
Q ss_pred hhhccc-ccccccCCCCCccccCCCCCCcCCcccccc--CCC-C--ChHHHHHHHHhhccccceEEEcChhhhhHHHHHH
Q 010988 159 YNLHTS-KVHENVTSKSDYFVVPGLPDQIEMTKVQVP--LMR-E--NSKDFGELVLAADMKSYGIIINTFEELESEYVKE 232 (496)
Q Consensus 159 ~~~~~~-~~~~~~~~~~~~~~~p~l~~~~~l~~~~~~--~~~-~--~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~ 232 (496)
.+.... ..............+|+++. +...+++ +.. . .+.....++.+....+.++++||+.+||+++++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 218 (456)
T PLN02210 142 YRYYMKTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIES 218 (456)
T ss_pred HhhhhccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHH
Confidence 654321 11111111112245777764 5555655 211 1 1223444554455667899999999999999998
Q ss_pred HHhhcCCceEEeCcCcCCCc--CCchhhhhCC--CCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHh
Q 010988 233 YKKTKGGKVWCLGPVSLCNK--QDIDKAERGK--KAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA 308 (496)
Q Consensus 233 ~~~~~~~~v~~VGpl~~~~~--~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~ 308 (496)
+.+ . +++++|||+.+... ........++ ..|..++++.+||+.+++++||||||||....+.+++.+++.+|+.
T Consensus 219 l~~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~ 296 (456)
T PLN02210 219 MAD-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKN 296 (456)
T ss_pred Hhh-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 876 3 57999999974211 0000000111 1123466789999999888999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccC
Q 010988 309 SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWP 388 (496)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P 388 (496)
++++|||+++... ..+ .++.+.++..+++.+|.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 297 ~~~~flw~~~~~~-~~~------~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P 369 (456)
T PLN02210 297 RGVPFLWVIRPKE-KAQ------NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYP 369 (456)
T ss_pred CCCCEEEEEeCCc-ccc------chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecc
Confidence 9999999997543 111 223344443235567779999999999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhC
Q 010988 389 LFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEET 468 (496)
Q Consensus 389 ~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~ 468 (496)
+++||+.||+++++.+|+|+.+...+ .++.++.++|+++|+++|.| ++++.+|+||++|++.+++|+++|
T Consensus 370 ~~~DQ~~na~~~~~~~g~G~~l~~~~---------~~~~~~~~~l~~av~~~m~~-~~g~~~r~~a~~l~~~a~~Av~~g 439 (456)
T PLN02210 370 SWTDQPIDARLLVDVFGIGVRMRNDA---------VDGELKVEEVERCIEAVTEG-PAAADIRRRAAELKHVARLALAPG 439 (456)
T ss_pred cccccHHHHHHHHHHhCeEEEEeccc---------cCCcCCHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999963499999996431 01258999999999999976 447789999999999999999999
Q ss_pred CChHHHHHHHHHHHh
Q 010988 469 GSSSLMIKLLIQDIM 483 (496)
Q Consensus 469 g~~~~~~~~~~~~~~ 483 (496)
|||+.++++||++++
T Consensus 440 GSS~~~l~~~v~~~~ 454 (456)
T PLN02210 440 GSSARNLDLFISDIT 454 (456)
T ss_pred CcHHHHHHHHHHHHh
Confidence 999999999999985
No 13
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-61 Score=485.45 Aligned_cols=449 Identities=26% Similarity=0.447 Sum_probs=328.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcch-hhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCC
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNG--AAITIVTTPANA-ARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEG 83 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rG--H~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~ 83 (496)
|.+.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+............+++++.+|.... .+..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCcc
Confidence 3457999999999999999999999999998 999999998765 333332222111122589998883211 1110
Q ss_pred CCcccCCCchhhHHHHHHHHHh----hhHHHHHHHHhcC--CCC-eEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHH
Q 010988 84 SENFDMLHSTDLLFNFFKSLTL----LQLPLENLLKELA--PKP-SCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLL 156 (496)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~ll~~~~--~~p-DlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~ 156 (496)
. .. . +....+...... +...+.++++... .+| ++||+|.++.|+..+|+++|||.+.|+++++..+.
T Consensus 78 ~-~~---~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~ 151 (468)
T PLN02207 78 G-GT---Q--SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLA 151 (468)
T ss_pred c-cc---c--CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHH
Confidence 0 00 0 111222222222 2445666665421 134 89999999999999999999999999999998888
Q ss_pred HHhhhccccc-cccc--CCCCCccccCCCCCCcCCcccccc--CCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHH
Q 010988 157 CLYNLHTSKV-HENV--TSKSDYFVVPGLPDQIEMTKVQVP--LMRENSKDFGELVLAADMKSYGIIINTFEELESEYVK 231 (496)
Q Consensus 157 ~~~~~~~~~~-~~~~--~~~~~~~~~p~l~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 231 (496)
++.+...... .... +.......+|+++.. +...+++ +........+.+......+++++++||+++||+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~ 229 (468)
T PLN02207 152 MMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP--VPANVLPSALFVEDGYDAYVKLAILFTKANGILVNSSFDIEPYSVN 229 (468)
T ss_pred HHHHhhhccccccccCcCCCCCeEECCCCCCC--CChHHCcchhcCCccHHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 7766642211 1111 111133468888322 6777777 2211112233344445678899999999999999988
Q ss_pred HHHh-hcCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCC
Q 010988 232 EYKK-TKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASK 310 (496)
Q Consensus 232 ~~~~-~~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~ 310 (496)
.+.. ...++++.|||+......... ......++++.+||+++++++||||||||....+.+++.+++.+|+.++
T Consensus 230 ~~~~~~~~p~v~~VGPl~~~~~~~~~-----~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~ 304 (468)
T PLN02207 230 HFLDEQNYPSVYAVGPIFDLKAQPHP-----EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQ 304 (468)
T ss_pred HHHhccCCCcEEEecCCcccccCCCC-----ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCC
Confidence 8865 334789999999764321100 0000123679999999988999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCc
Q 010988 311 KPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLF 390 (496)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~ 390 (496)
++|||+++... . +..+| +|++|.++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 305 ~~flW~~r~~~-~--~~~~~-lp~~f~er~-~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~ 379 (468)
T PLN02207 305 YRFLWSLRTEE-V--TNDDL-LPEGFLDRV-SGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMY 379 (468)
T ss_pred CcEEEEEeCCC-c--ccccc-CCHHHHhhc-CCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCcc
Confidence 99999998532 1 11223 788887765 4667888999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCC
Q 010988 391 GDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGS 470 (496)
Q Consensus 391 ~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~ 470 (496)
+||+.||+++++++|+|+++.... +.+++..++.++|.++|+++|++ +.+.||+||+++++.+++|+++|||
T Consensus 380 ~DQ~~Na~~~~~~~gvGv~~~~~~------~~~~~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~A~~~GGS 451 (468)
T PLN02207 380 AEQQLNAFLMVKELKLAVELKLDY------RVHSDEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQRATKNGGS 451 (468)
T ss_pred ccchhhHHHHHHHhCceEEEeccc------ccccCCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999998865699999884320 00001246999999999999973 3569999999999999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 010988 471 SSLMIKLLIQDIMH 484 (496)
Q Consensus 471 ~~~~~~~~~~~~~~ 484 (496)
|+.++++||+++..
T Consensus 452 S~~~l~~~v~~~~~ 465 (468)
T PLN02207 452 SFAAIEKFIHDVIG 465 (468)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 14
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.8e-61 Score=485.36 Aligned_cols=452 Identities=29% Similarity=0.469 Sum_probs=338.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcc
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 87 (496)
.+.||+++|+|++||++|++.||+.|+.||+.|||++++.+...+...... ...+++++.+|++.. +++|.+.+..
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~-dglp~~~~~~ 80 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSV-PGLPSSAESS 80 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCcc-CCCCCCcccc
Confidence 457999999999999999999999999999999999999877655432111 123589999997765 3777654432
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhcccccc
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVH 167 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (496)
..... .....+....+.+.+.++++++. .++++||+|.++.|+..+|+++|||.+.|+++++..++.++++......
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~ 157 (472)
T PLN02670 81 TDVPY-TKQQLLKKAFDLLEPPLTTFLET--SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEG 157 (472)
T ss_pred cccch-hhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhc
Confidence 22110 11233445566778888999888 6899999999999999999999999999999999888776544211111
Q ss_pred cccCCCCCc-cccCCCCC---CcCCcccccc--CCC---C-C-hHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhh
Q 010988 168 ENVTSKSDY-FVVPGLPD---QIEMTKVQVP--LMR---E-N-SKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKT 236 (496)
Q Consensus 168 ~~~~~~~~~-~~~p~l~~---~~~l~~~~~~--~~~---~-~-~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 236 (496)
......... ..+|++.+ .+.+...+++ +.. . . ...+. +......++.++++|||.+||+++++.+...
T Consensus 158 ~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~ 236 (472)
T PLN02670 158 GDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDLLSDL 236 (472)
T ss_pred ccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHHHHHh
Confidence 111111111 12444321 1224455555 211 1 1 22233 3333456788999999999999999999876
Q ss_pred cCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEE
Q 010988 237 KGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWV 316 (496)
Q Consensus 237 ~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~ 316 (496)
++++++.|||+.+....... .........+++.+||+++++++||||||||....+.+++.+++.+|+.++++|||+
T Consensus 237 ~~~~v~~VGPl~~~~~~~~~---~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv 313 (472)
T PLN02670 237 YRKPIIPIGFLPPVIEDDEE---DDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWV 313 (472)
T ss_pred hCCCeEEEecCCcccccccc---ccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 65789999999653111000 000000012579999999988999999999999999999999999999999999999
Q ss_pred EeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchh
Q 010988 317 IRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCN 396 (496)
Q Consensus 317 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~n 396 (496)
+........+..++ +|++|.++....++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 314 ~r~~~~~~~~~~~~-lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~N 392 (472)
T PLN02670 314 LRNEPGTTQNALEM-LPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLN 392 (472)
T ss_pred EcCCcccccchhhc-CChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHH
Confidence 98532011222223 89999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 010988 397 EKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIK 476 (496)
Q Consensus 397 a~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~ 476 (496)
|+++ +++|+|+.+...+ .++.++.++|+++|+++|.| ++++.||+||+++++.++ ..+.....++
T Consensus 393 a~~v-~~~g~Gv~l~~~~---------~~~~~~~e~i~~av~~vm~~-~~g~~~r~~a~~l~~~~~----~~~~~~~~~~ 457 (472)
T PLN02670 393 TRLL-HGKKLGLEVPRDE---------RDGSFTSDSVAESVRLAMVD-DAGEEIRDKAKEMRNLFG----DMDRNNRYVD 457 (472)
T ss_pred HHHH-HHcCeeEEeeccc---------cCCcCcHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHh----CcchhHHHHH
Confidence 9999 5999999997531 01258999999999999986 356789999999999987 3356688999
Q ss_pred HHHHHHhcCC
Q 010988 477 LLIQDIMHQP 486 (496)
Q Consensus 477 ~~~~~~~~~~ 486 (496)
+|++.+.+.+
T Consensus 458 ~~~~~l~~~~ 467 (472)
T PLN02670 458 ELVHYLRENR 467 (472)
T ss_pred HHHHHHHHhc
Confidence 9999998877
No 15
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=5.1e-61 Score=482.96 Aligned_cols=434 Identities=24% Similarity=0.404 Sum_probs=331.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcc
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 87 (496)
+++||+++|+|++||++|++.||+.|+++|++|||++++.+...++... .....+.++.++++.. +++|.+.+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~----~~~~~i~~~~i~lP~~-dGLP~g~e~~ 77 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN----LFPDSIVFEPLTLPPV-DGLPFGAETA 77 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc----cCCCceEEEEecCCCc-CCCCCccccc
Confidence 4579999999999999999999999999999999999998766554321 1122488877776643 4777664332
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhcccccc
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVH 167 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (496)
..... .....+......+.+.++++++. .+||+||+| +++|+..+|+.+|||.+.|+++++..+.++.++..
T Consensus 78 ~~l~~-~~~~~~~~a~~~l~~~l~~~L~~--~~p~cVV~D-~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~---- 149 (446)
T PLN00414 78 SDLPN-STKKPIFDAMDLLRDQIEAKVRA--LKPDLIFFD-FVHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA---- 149 (446)
T ss_pred ccchh-hHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEEC-CchhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh----
Confidence 22211 22334555666777888888877 689999999 58899999999999999999999988877665211
Q ss_pred cccCCCCCccccCCCCCC-cCCcccc--cc-CCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCCceEE
Q 010988 168 ENVTSKSDYFVVPGLPDQ-IEMTKVQ--VP-LMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWC 243 (496)
Q Consensus 168 ~~~~~~~~~~~~p~l~~~-~~l~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~ 243 (496)
... ..+|++|.. +.+...+ ++ +... ....+.+..+...+++++++|||.+||+.+++.+...++++++.
T Consensus 150 -~~~-----~~~pg~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~ 222 (446)
T PLN00414 150 -ELG-----FPPPDYPLSKVALRGHDANVCSLFAN-SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLL 222 (446)
T ss_pred -hcC-----CCCCCCCCCcCcCchhhcccchhhcc-cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEE
Confidence 000 123555531 1122121 11 1111 12334444455677899999999999999999998765567999
Q ss_pred eCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCC
Q 010988 244 LGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNT 323 (496)
Q Consensus 244 VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 323 (496)
|||+.+..... .+ ....+++.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|++.... .
T Consensus 223 VGPl~~~~~~~-----~~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~-~ 293 (446)
T PLN00414 223 TGPMLPEPQNK-----SG---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPK-G 293 (446)
T ss_pred EcccCCCcccc-----cC---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCC-C
Confidence 99996532110 00 012456889999999999999999999999999999999999999999999997642 1
Q ss_pred chhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHHHHH
Q 010988 324 SKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQV 403 (496)
Q Consensus 324 ~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~ 403 (496)
..+...+ +|++|.++.+..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++++++
T Consensus 294 ~~~~~~~-lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~ 372 (446)
T PLN00414 294 SSTVQEA-LPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEE 372 (446)
T ss_pred cccchhh-CChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHH
Confidence 1122233 899999999888999999999999999999999999999999999999999999999999999999999657
Q ss_pred hhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 010988 404 LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGG-ERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDI 482 (496)
Q Consensus 404 ~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~-~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 482 (496)
+|+|+++...+ ++.++.++|+++|+++|+|++ .++.+|++++++++.+. ++||++.. +++||+++
T Consensus 373 ~g~g~~~~~~~----------~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~ss~-l~~~v~~~ 438 (446)
T PLN00414 373 LEVSVKVQRED----------SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLSGY-ADKFVEAL 438 (446)
T ss_pred hCeEEEecccc----------CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcHHH-HHHHHHHH
Confidence 99999996430 114899999999999998763 47789999999999974 66884444 89999998
Q ss_pred hcC
Q 010988 483 MHQ 485 (496)
Q Consensus 483 ~~~ 485 (496)
...
T Consensus 439 ~~~ 441 (446)
T PLN00414 439 ENE 441 (446)
T ss_pred HHh
Confidence 543
No 16
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.5e-61 Score=481.34 Aligned_cols=430 Identities=29% Similarity=0.508 Sum_probs=317.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEE--eCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCc
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNG--AAITIV--TTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSEN 86 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rG--H~Vt~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~ 86 (496)
||+++|+|++||++|++.||+.|+.+| +.||+. .++.+...+.+..........+++++.+|.... .+.....
T Consensus 5 Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~~~ 81 (451)
T PLN03004 5 AIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP---YSSSSTS 81 (451)
T ss_pred EEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC---CCCcccc
Confidence 999999999999999999999999998 556664 444333222221111111123589988874421 1111111
Q ss_pred ccCCCchhhHHHHHHHHHhhhHHHHHHHHhcC--CCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhccc
Q 010988 87 FDMLHSTDLLFNFFKSLTLLQLPLENLLKELA--PKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTS 164 (496)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 164 (496)
. ......+......+...+.+++++.. .++++||+|.+++|+..+|+++|||.+.|+++++..++.+.+.+..
T Consensus 82 --~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~ 156 (451)
T PLN03004 82 --R---HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTI 156 (451)
T ss_pred --c---cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhc
Confidence 0 11112233333345555666666531 2459999999999999999999999999999999998888775421
Q ss_pred c-cccccC-CCCCccccCCCCCCcCCcccccc--CCCC--ChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcC
Q 010988 165 K-VHENVT-SKSDYFVVPGLPDQIEMTKVQVP--LMRE--NSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKG 238 (496)
Q Consensus 165 ~-~~~~~~-~~~~~~~~p~l~~~~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 238 (496)
. ...... .......+|+++. +...+++ +... .....+.+......+++++++|||++||+++++.+...+.
T Consensus 157 ~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~ 233 (451)
T PLN03004 157 DETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELC 233 (451)
T ss_pred cccccccccccCCeecCCCCCC---CChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCC
Confidence 1 100000 1112346788876 6667777 2211 1223344444455678899999999999999999976543
Q ss_pred -CceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEE
Q 010988 239 -GKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVI 317 (496)
Q Consensus 239 -~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~ 317 (496)
++++.|||+....... ... .+ .+.++.+||+++++++||||||||....+.+++.+|+.+|+.++++|||++
T Consensus 234 ~~~v~~vGPl~~~~~~~-----~~~-~~-~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~ 306 (451)
T PLN03004 234 FRNIYPIGPLIVNGRIE-----DRN-DN-KAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVV 306 (451)
T ss_pred CCCEEEEeeeccCcccc-----ccc-cc-hhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 5899999997422100 011 01 245699999999889999999999999999999999999999999999999
Q ss_pred eCCCCCch---hhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccc
Q 010988 318 RGGNNTSK---EIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQF 394 (496)
Q Consensus 318 ~~~~~~~~---~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~ 394 (496)
+....... +...| +|++|.++.+..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 307 r~~~~~~~~~~~~~~~-lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~ 385 (451)
T PLN03004 307 RNPPELEKTELDLKSL-LPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQR 385 (451)
T ss_pred cCCccccccccchhhh-CChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccch
Confidence 85310000 12334 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHH
Q 010988 395 CNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSL 473 (496)
Q Consensus 395 ~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~ 473 (496)
.||+++++++|+|++++..+ ++.+++++|+++|+++|+|+ .||++++++++.+++|+++||||+.
T Consensus 386 ~na~~~~~~~g~g~~l~~~~----------~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 386 FNRVMIVDEIKIAISMNESE----------TGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hhHHHHHHHhCceEEecCCc----------CCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999954579999997531 11479999999999999876 8999999999999999999999864
No 17
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-60 Score=479.26 Aligned_cols=422 Identities=26% Similarity=0.462 Sum_probs=319.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
+.||+++|+|++||++|++.||+.|+.+|++||+++++.+...+.+... ...+++++.+|. +++++.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~-----g~~~~~---- 72 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISD-----GQDDDP---- 72 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCC-----CCCCCc----
Confidence 4699999999999999999999999999999999999987665544311 112588888762 333211
Q ss_pred CCCchhhHHHHHHHHH-hhhHHHHHHHHhcC--CCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhcccc
Q 010988 89 MLHSTDLLFNFFKSLT-LLQLPLENLLKELA--PKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSK 165 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~--~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (496)
. .+.. .+...+. .+.+.++++++... .++++||+|.+..|+..+|+++|||.+.|+++++..+..+++.....
T Consensus 73 --~-~~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~ 148 (448)
T PLN02562 73 --P-RDFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELV 148 (448)
T ss_pred --c-ccHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHh
Confidence 0 1122 3334444 46777777777631 23489999999999999999999999999999988777765543211
Q ss_pred cc---cccC--CCCCc-cccCCCCCCcCCcccccc-CC-C----CChHHHHHHHHhhccccceEEEcChhhhhHHHHHHH
Q 010988 166 VH---ENVT--SKSDY-FVVPGLPDQIEMTKVQVP-LM-R----ENSKDFGELVLAADMKSYGIIINTFEELESEYVKEY 233 (496)
Q Consensus 166 ~~---~~~~--~~~~~-~~~p~l~~~~~l~~~~~~-~~-~----~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 233 (496)
.. .... ....+ ..+|+++. ++..+++ +. . ......+.+..+...+++++++|||.+||+++++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 225 (448)
T PLN02562 149 RTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNH 225 (448)
T ss_pred hccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHH
Confidence 11 1111 00111 25777765 5666666 21 1 112333444445566788999999999999988876
Q ss_pred Hh----hcCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCcc-CCChhhHHHHHHHHHh
Q 010988 234 KK----TKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSIC-NLTSSQMIELGLGLEA 308 (496)
Q Consensus 234 ~~----~~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~-~~~~~~~~~~~~a~~~ 308 (496)
.. +..++++.|||+....... ......+..+.++.+||++++++++|||||||+. ..+.+++.+++.++++
T Consensus 226 ~~~~~~~~~~~v~~iGpl~~~~~~~----~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~ 301 (448)
T PLN02562 226 QASYNNGQNPQILQIGPLHNQEATT----ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEA 301 (448)
T ss_pred HhhhccccCCCEEEecCcccccccc----cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHH
Confidence 53 2347899999997643210 0011111234567799999988899999999986 5788999999999999
Q ss_pred CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccC
Q 010988 309 SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWP 388 (496)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P 388 (496)
++++|||+++.+. . .. +|+++.++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 302 ~g~~fiW~~~~~~-~----~~--l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P 373 (448)
T PLN02562 302 SGRPFIWVLNPVW-R----EG--LPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYP 373 (448)
T ss_pred CCCCEEEEEcCCc-h----hh--CCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCC
Confidence 9999999997532 1 11 777776665 57889899999999999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhC
Q 010988 389 LFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEET 468 (496)
Q Consensus 389 ~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~ 468 (496)
+++||+.||+++++.+|+|+.+ . .++.++|.++|+++|+|+ .||+||+++++++.++ ++|
T Consensus 374 ~~~DQ~~na~~~~~~~g~g~~~--~-------------~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-~~g 433 (448)
T PLN02562 374 VAGDQFVNCAYIVDVWKIGVRI--S-------------GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-EAR 433 (448)
T ss_pred cccchHHHHHHHHHHhCceeEe--C-------------CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-CCC
Confidence 9999999999996346988777 3 378999999999999876 8999999999999888 778
Q ss_pred CChHHHHHHHHHHH
Q 010988 469 GSSSLMIKLLIQDI 482 (496)
Q Consensus 469 g~~~~~~~~~~~~~ 482 (496)
|||++++++||+++
T Consensus 434 GSS~~nl~~~v~~~ 447 (448)
T PLN02562 434 LRSMMNFTTLKDEL 447 (448)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999986
No 18
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.1e-60 Score=477.66 Aligned_cols=432 Identities=26% Similarity=0.462 Sum_probs=319.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQ-NGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 87 (496)
+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+.. +...... ....+++++.++ ++++++....
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~-~~~~~i~~~~i~-----dglp~g~~~~ 74 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNH-NNVENLSFLTFS-----DGFDDGVISN 74 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccC-CCCCCEEEEEcC-----CCCCCccccc
Confidence 459999999999999999999999996 699999999985421 1111111 011258888875 4666553211
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcC---CCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhccc
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELA---PKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTS 164 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 164 (496)
. ......+......+.+.+.+++++.. .++++||+|.+++|+..+|+.+|||.+.|++++++.+.++++....
T Consensus 75 ~----~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 75 T----DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred c----ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 1 12223344444455666666666531 2359999999999999999999999999999999998887765421
Q ss_pred ccccccCCCCCccccCCCCCCcCCcccccc--CCC----CChHHHHHHHHhhcc--ccceEEEcChhhhhHHHHHHHHhh
Q 010988 165 KVHENVTSKSDYFVVPGLPDQIEMTKVQVP--LMR----ENSKDFGELVLAADM--KSYGIIINTFEELESEYVKEYKKT 236 (496)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~l~~~~~~--~~~----~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~~~~~~~ 236 (496)
. .....+|+++. ++.++++ +.. ..+...+.+..+... .++++++|||++||+++++.+..
T Consensus 151 ~--------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~- 218 (455)
T PLN02152 151 N--------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN- 218 (455)
T ss_pred C--------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-
Confidence 1 12345788775 6666766 221 112233334444332 24689999999999999998854
Q ss_pred cCCceEEeCcCcCCCcCCchhhhhCC--CCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeE
Q 010988 237 KGGKVWCLGPVSLCNKQDIDKAERGK--KAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFI 314 (496)
Q Consensus 237 ~~~~v~~VGpl~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i 314 (496)
..++.|||+.+....... ..+. ..+..+.++.+||+.+++++||||||||....+.+++.+++.+|+.++++||
T Consensus 219 --~~v~~VGPL~~~~~~~~~--~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~fl 294 (455)
T PLN02152 219 --IEMVAVGPLLPAEIFTGS--ESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFL 294 (455)
T ss_pred --CCEEEEcccCcccccccc--ccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeE
Confidence 259999999753210000 0011 0011245799999999888999999999999999999999999999999999
Q ss_pred EEEeCCCCCc-----hhhhhh-hhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccC
Q 010988 315 WVIRGGNNTS-----KEIQEW-LLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWP 388 (496)
Q Consensus 315 ~~~~~~~~~~-----~~~~~~-~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P 388 (496)
|+++... .. .....+ .+|++|.++. .+|++|.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 295 Wv~r~~~-~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P 372 (455)
T PLN02152 295 WVITDKL-NREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFP 372 (455)
T ss_pred EEEecCc-ccccccccccccccccchhHHHhc-cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecc
Confidence 9997632 10 000001 0356776654 56678889999999999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhC
Q 010988 389 LFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEET 468 (496)
Q Consensus 389 ~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~ 468 (496)
+++||+.||+++++.+|+|+.+..++ +..++.++|+++|+++|+|+ ++.||++++++++.+++++.+|
T Consensus 373 ~~~DQ~~na~~~~~~~~~G~~~~~~~----------~~~~~~e~l~~av~~vm~~~--~~~~r~~a~~~~~~~~~a~~~g 440 (455)
T PLN02152 373 MWSDQPANAKLLEEIWKTGVRVRENS----------EGLVERGEIRRCLEAVMEEK--SVELRESAEKWKRLAIEAGGEG 440 (455)
T ss_pred ccccchHHHHHHHHHhCceEEeecCc----------CCcCcHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999964457777764321 12479999999999999754 5579999999999999999999
Q ss_pred CChHHHHHHHHHHH
Q 010988 469 GSSSLMIKLLIQDI 482 (496)
Q Consensus 469 g~~~~~~~~~~~~~ 482 (496)
|||+.++++||+++
T Consensus 441 gsS~~nl~~li~~i 454 (455)
T PLN02152 441 GSSDKNVEAFVKTL 454 (455)
T ss_pred CcHHHHHHHHHHHh
Confidence 99999999999986
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.9e-60 Score=483.29 Aligned_cols=438 Identities=30% Similarity=0.464 Sum_probs=326.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCC
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGS 84 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~ 84 (496)
....||+++|+|++||++|++.||++|+.+ ||+|||++++.+...+++.. ...+++|+.+|. +++.+.
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~-----~~p~~~ 77 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPN-----VIPSEL 77 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCC-----CCCCcc
Confidence 467899999999999999999999999999 99999999998877665431 123688888872 233322
Q ss_pred CcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhccc
Q 010988 85 ENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTS 164 (496)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 164 (496)
... .+....+....+.+...+.++++....++|+||+|.+++|+..+|+++|||++.++++++..+..+.++...
T Consensus 78 ~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~ 152 (459)
T PLN02448 78 VRA-----ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLL 152 (459)
T ss_pred ccc-----cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhh
Confidence 111 112222222333466677777776334679999999999999999999999999999999877776665321
Q ss_pred ccccccCC------CCCccccCCCCCCcCCcccccc-C-CCC--ChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHH
Q 010988 165 KVHENVTS------KSDYFVVPGLPDQIEMTKVQVP-L-MRE--NSKDFGELVLAADMKSYGIIINTFEELESEYVKEYK 234 (496)
Q Consensus 165 ~~~~~~~~------~~~~~~~p~l~~~~~l~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 234 (496)
........ ......+|+++. +...+++ + ... .....+........++..+++||+++||+.+++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 229 (459)
T PLN02448 153 PQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALK 229 (459)
T ss_pred hhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHH
Confidence 11100000 011124666654 5555555 2 111 112222333334456789999999999999999998
Q ss_pred hhcCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeE
Q 010988 235 KTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFI 314 (496)
Q Consensus 235 ~~~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i 314 (496)
+.++++++.|||+......... . ........+.++.+|++.++++++|||||||....+.+++.+++.+|+.++++||
T Consensus 230 ~~~~~~~~~iGP~~~~~~~~~~-~-~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~l 307 (459)
T PLN02448 230 SKFPFPVYPIGPSIPYMELKDN-S-SSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFL 307 (459)
T ss_pred hhcCCceEEecCcccccccCCC-c-cccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEE
Confidence 8776789999999653211100 0 0000001234788999999889999999999988889999999999999999999
Q ss_pred EEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccc
Q 010988 315 WVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQF 394 (496)
Q Consensus 315 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~ 394 (496)
|++.... .++.+ ++ ++|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+
T Consensus 308 w~~~~~~---~~~~~--~~--------~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~ 374 (459)
T PLN02448 308 WVARGEA---SRLKE--IC--------GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQP 374 (459)
T ss_pred EEEcCch---hhHhH--hc--------cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccch
Confidence 9876432 11111 11 35888889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHhhhCCChHH
Q 010988 395 CNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEG-GERENRRKRAREFQMMAKRATEETGSSSL 473 (496)
Q Consensus 395 ~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~-~~~~~~~~~a~~l~~~~~~a~~~~g~~~~ 473 (496)
.||+++++.+|+|+.+.... +.+..+++++|+++|+++|+++ ++++.||++|+++++++++|+++||||..
T Consensus 375 ~na~~v~~~~g~G~~~~~~~--------~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~ 446 (459)
T PLN02448 375 LNSKLIVEDWKIGWRVKREV--------GEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDT 446 (459)
T ss_pred hhHHHHHHHhCceEEEeccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 99999964479998886320 0012579999999999999875 56889999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 010988 474 MIKLLIQDIMHQ 485 (496)
Q Consensus 474 ~~~~~~~~~~~~ 485 (496)
++++|++.++.-
T Consensus 447 ~l~~~v~~~~~~ 458 (459)
T PLN02448 447 NLDAFIRDISQG 458 (459)
T ss_pred HHHHHHHHHhcc
Confidence 999999999754
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7e-60 Score=482.17 Aligned_cols=450 Identities=27% Similarity=0.410 Sum_probs=324.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhH---HHHHHhhhc-CCCCeEEEEeeCCccccCCCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNG--AAITIVTTPANAARF---KTVVARAMQ-SGLPLQLIEIQFPYQEAGIPE 82 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~~---~~~~~~~~~-~~~~i~~~~i~~~~~~~~l~~ 82 (496)
++||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+ ......... ...+++++.+|.+.. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----PT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC----Cc
Confidence 56999999999999999999999999998 889999998765422 111111111 123588988874421 11
Q ss_pred CCCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhc---CCCC-eEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHH
Q 010988 83 GSENFDMLHSTDLLFNFFKSLTLLQLPLENLLKEL---APKP-SCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCL 158 (496)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~p-DlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~ 158 (496)
. . .......+....+.+.+.+.+++... ..+| ++||+|.++.|+..+|+++|||++.|+++++..+.++
T Consensus 78 ~-~------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 78 T-E------DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred c-c------chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 0 0 01222222233334455555555431 1134 8999999999999999999999999999999999888
Q ss_pred hhhcccccc---c--ccCCCCCccccCCCCCCcCCcccccc--CCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHH
Q 010988 159 YNLHTSKVH---E--NVTSKSDYFVVPGLPDQIEMTKVQVP--LMRENSKDFGELVLAADMKSYGIIINTFEELESEYVK 231 (496)
Q Consensus 159 ~~~~~~~~~---~--~~~~~~~~~~~p~l~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 231 (496)
++++..... + ..........+|+++.. +...+++ +........+.+......+++++++||+.+||+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~ 228 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALK 228 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH
Confidence 776432111 1 11111123457887422 5555666 2222222333444455677889999999999999988
Q ss_pred HHHhh--cCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhC
Q 010988 232 EYKKT--KGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS 309 (496)
Q Consensus 232 ~~~~~--~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~ 309 (496)
.+... ..++++.|||+........ .. ....++++.+||+++++++||||||||+...+.+++.+++.+|+.+
T Consensus 229 ~l~~~~~~~~~v~~vGpl~~~~~~~~-----~~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~ 302 (481)
T PLN02554 229 FFSGSSGDLPPVYPVGPVLHLENSGD-----DS-KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERS 302 (481)
T ss_pred HHHhcccCCCCEEEeCCCcccccccc-----cc-ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHc
Confidence 88752 2368999999943211100 00 0113568999999998889999999999888999999999999999
Q ss_pred CCCeEEEEeCCCC--------CchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhC
Q 010988 310 KKPFIWVIRGGNN--------TSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAG 381 (496)
Q Consensus 310 ~~~~i~~~~~~~~--------~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~G 381 (496)
+++|||+++.... ...+..++ +|+++.++. .+|+++.+|+||.+||.|+++++|||||||||++||+++|
T Consensus 303 ~~~flW~~~~~~~~~~~~~~~~~~~~~~~-lp~~~~~r~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~G 380 (481)
T PLN02554 303 GHRFLWSLRRASPNIMKEPPGEFTNLEEI-LPEGFLDRT-KDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFG 380 (481)
T ss_pred CCCeEEEEcCCcccccccccccccchhhh-CChHHHHHh-ccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcC
Confidence 9999999975210 00112232 577877665 4677888999999999999999999999999999999999
Q ss_pred CcEeccCCccccchhHH-HHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 010988 382 VPMITWPLFGDQFCNEK-LIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMM 460 (496)
Q Consensus 382 vP~v~~P~~~DQ~~na~-r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~ 460 (496)
||||++|+++||+.||+ ++ +++|+|+.++... ...+. .+.+..+++++|.++|+++|+++ +.||+||+++++.
T Consensus 381 VP~l~~P~~~DQ~~Na~~~v-~~~g~Gv~l~~~~-~~~~~-~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~ 454 (481)
T PLN02554 381 VPMAAWPLYAEQKFNAFEMV-EELGLAVEIRKYW-RGDLL-AGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEK 454 (481)
T ss_pred CCEEecCccccchhhHHHHH-HHhCceEEeeccc-ccccc-ccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHH
Confidence 99999999999999995 56 7999999996420 00000 00112689999999999999622 2899999999999
Q ss_pred HHHHhhhCCChHHHHHHHHHHHhcC
Q 010988 461 AKRATEETGSSSLMIKLLIQDIMHQ 485 (496)
Q Consensus 461 ~~~a~~~~g~~~~~~~~~~~~~~~~ 485 (496)
+++|+++||||..++++||+++..+
T Consensus 455 ~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 455 CHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999754
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.5e-59 Score=476.27 Aligned_cols=456 Identities=27% Similarity=0.452 Sum_probs=318.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCcchh-hHHHHHHhhhcCCCCeEEEEeeCCccccCCCC
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGA---AITIVTTPANAA-RFKTVVARAMQSGLPLQLIEIQFPYQEAGIPE 82 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH---~Vt~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~ 82 (496)
|++.||+++|+|++||++|++.||+.|+.+|. .||++++..... ..+...........+++++.+|.+.. +.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----p~ 76 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQD----PP 76 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCC----Cc
Confidence 45679999999999999999999999999983 567776553322 11222211111123599999875431 11
Q ss_pred CCCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcC---C-CCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHH
Q 010988 83 GSENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELA---P-KPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCL 158 (496)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~-~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~ 158 (496)
+...............+......+.+.+.+++.+.. . ++++||+|.+++|+..+|+++|||.+.|+++++..+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~ 156 (475)
T PLN02167 77 PMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMM 156 (475)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 111001000011122122222233344444433210 1 359999999999999999999999999999999888877
Q ss_pred hhhccc-cccc-cc--CCCCCccccCCCCCCcCCcccccc--CCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHH
Q 010988 159 YNLHTS-KVHE-NV--TSKSDYFVVPGLPDQIEMTKVQVP--LMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKE 232 (496)
Q Consensus 159 ~~~~~~-~~~~-~~--~~~~~~~~~p~l~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~ 232 (496)
++.... .... .. .....+..+|+++.. +...+++ .........+.+..+...+++++++|||.+||+++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 234 (475)
T PLN02167 157 KYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAFDY 234 (475)
T ss_pred HHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHHHH
Confidence 765321 1111 00 011123457887432 4455555 22211122333334456778899999999999999998
Q ss_pred HHhhc--CCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCC
Q 010988 233 YKKTK--GGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASK 310 (496)
Q Consensus 233 ~~~~~--~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~ 310 (496)
+.... -++++.|||+........ .......+.++.+||+.+++++||||||||+...+.+++.+++.+++.++
T Consensus 235 l~~~~~~~p~v~~vGpl~~~~~~~~-----~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~ 309 (475)
T PLN02167 235 FSRLPENYPPVYPVGPILSLKDRTS-----PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVG 309 (475)
T ss_pred HHhhcccCCeeEEeccccccccccC-----CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCC
Confidence 86541 168999999976421100 00000123679999999988999999999998889999999999999999
Q ss_pred CCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCc
Q 010988 311 KPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLF 390 (496)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~ 390 (496)
++|||+++.......+...+ +|+++.++.... +++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 310 ~~flw~~~~~~~~~~~~~~~-lp~~~~er~~~r-g~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~ 387 (475)
T PLN02167 310 CRFLWSIRTNPAEYASPYEP-LPEGFMDRVMGR-GLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMY 387 (475)
T ss_pred CcEEEEEecCcccccchhhh-CChHHHHHhccC-eeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 99999987532000011122 788887776444 4666999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCC
Q 010988 391 GDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGS 470 (496)
Q Consensus 391 ~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~ 470 (496)
+||+.||+++++++|+|+.+.... + ++.+..+++++|.++|+++|+++ +.||++++++++.+++|+++|||
T Consensus 388 ~DQ~~na~~~~~~~g~g~~~~~~~---~---~~~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~av~~gGs 458 (475)
T PLN02167 388 AEQQLNAFTMVKELGLAVELRLDY---V---SAYGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARKAVMDGGS 458 (475)
T ss_pred ccchhhHHHHHHHhCeeEEeeccc---c---cccCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999986337999999986430 0 00012579999999999999764 28999999999999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 010988 471 SSLMIKLLIQDIMH 484 (496)
Q Consensus 471 ~~~~~~~~~~~~~~ 484 (496)
|..++++||++|.+
T Consensus 459 S~~~l~~~v~~i~~ 472 (475)
T PLN02167 459 SFVAVKRFIDDLLG 472 (475)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999976
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.8e-49 Score=406.62 Aligned_cols=413 Identities=17% Similarity=0.212 Sum_probs=287.7
Q ss_pred CCCEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccc-cCCCCCCC
Q 010988 8 QQPHFVLF-PFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQE-AGIPEGSE 85 (496)
Q Consensus 8 ~~~~il~~-~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~-~~l~~~~~ 85 (496)
...||+++ |.++.||+.-+.+|+++|++|||+||++++..... .... ...+++.+.++..... ........
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKSSA 91 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhhhh
Confidence 34678766 77899999999999999999999999997763210 0000 1235665555422111 00000000
Q ss_pred cccC---CCc-----hhhHHHHHHHHH--hhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhc-CCCeEEEecchHHH
Q 010988 86 NFDM---LHS-----TDLLFNFFKSLT--LLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARF-NIPRISFHGFSCFC 154 (496)
Q Consensus 86 ~~~~---~~~-----~~~~~~~~~~~~--~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~l-giP~v~~~~~~~~~ 154 (496)
.... ... ...+..+...++ ...+.+.++++....++|+||+|.+..|+..+|+.+ ++|.|.+++.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~ 171 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLA 171 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCch
Confidence 0000 000 001111122222 224567788871116899999998888999999999 99988877654432
Q ss_pred HHHHhhhcccccccccC-CCCCccccCCCCCC----cCCcccccc-CC-----------CCChHHHHHH--------HHh
Q 010988 155 LLCLYNLHTSKVHENVT-SKSDYFVVPGLPDQ----IEMTKVQVP-LM-----------RENSKDFGEL--------VLA 209 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~~~-~~~~~~~~p~l~~~----~~l~~~~~~-~~-----------~~~~~~~~~~--------~~~ 209 (496)
... ...+ .+..+.|+|.+... +++..|... +. ........++ +.+
T Consensus 172 ~~~----------~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~ 241 (507)
T PHA03392 172 ENF----------ETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRE 241 (507)
T ss_pred hHH----------HhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHH
Confidence 211 1112 34556677754332 222222111 00 0001111111 122
Q ss_pred hccccceEEEcChhhhhHHHHHHHHhhcCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeC
Q 010988 210 ADMKSYGIIINTFEELESEYVKEYKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLG 289 (496)
Q Consensus 210 ~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~G 289 (496)
...+.+.+++|+.+.++ +++++++++++|||+..+..... .+++++.+|++.. ++++||||||
T Consensus 242 l~~~~~l~lvns~~~~d------~~rp~~p~v~~vGgi~~~~~~~~----------~l~~~l~~fl~~~-~~g~V~vS~G 304 (507)
T PHA03392 242 LRNRVQLLFVNVHPVFD------NNRPVPPSVQYLGGLHLHKKPPQ----------PLDDYLEEFLNNS-TNGVVYVSFG 304 (507)
T ss_pred HHhCCcEEEEecCcccc------CCCCCCCCeeeecccccCCCCCC----------CCCHHHHHHHhcC-CCcEEEEECC
Confidence 33455678999998887 45688999999999976431111 1588999999876 4579999999
Q ss_pred CccC---CChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccc
Q 010988 290 SICN---LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFL 366 (496)
Q Consensus 290 S~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I 366 (496)
|... .+.+++..+++|+++.+++|||+.+... .+. ..++||.+.+|+||.+||+|+.+++||
T Consensus 305 S~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~----------~~~-----~~p~Nv~i~~w~Pq~~lL~hp~v~~fI 369 (507)
T PHA03392 305 SSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV----------EAI-----NLPANVLTQKWFPQRAVLKHKNVKAFV 369 (507)
T ss_pred CCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc----------Ccc-----cCCCceEEecCCCHHHHhcCCCCCEEE
Confidence 9864 4678899999999999999999987654 210 126899999999999999999999999
Q ss_pred cCCChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChh
Q 010988 367 THCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGE 446 (496)
Q Consensus 367 ~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~ 446 (496)
||||+||++||+++|||||++|+++||+.||+|+ +++|+|+.+++. .+++++|.++|+++|+|+
T Consensus 370 tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~-------------~~t~~~l~~ai~~vl~~~-- 433 (507)
T PHA03392 370 TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTV-------------TVSAAQLVLAIVDVIENP-- 433 (507)
T ss_pred ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccC-------------CcCHHHHHHHHHHHhCCH--
Confidence 9999999999999999999999999999999999 699999999987 699999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhcCC-CCCC
Q 010988 447 RENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIMHQP-HSDH 490 (496)
Q Consensus 447 ~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~-~~~~ 490 (496)
.||+||+++++.++ ++.-+..+.+..-++....+. ..+|
T Consensus 434 --~y~~~a~~ls~~~~---~~p~~~~~~av~~iE~v~r~~~g~~~ 473 (507)
T PHA03392 434 --KYRKNLKELRHLIR---HQPMTPLHKAIWYTEHVIRNKHGNTS 473 (507)
T ss_pred --HHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhCCCCccc
Confidence 99999999999998 445455677778888887776 5554
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=5.9e-50 Score=417.11 Aligned_cols=401 Identities=23% Similarity=0.316 Sum_probs=228.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc--
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD-- 88 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~-- 88 (496)
||+++|. +.||+.++..|+++|++|||+||++++..... +... ...+++++.++................
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-cccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 7888884 78999999999999999999999998754221 2111 123466666653332222222211100
Q ss_pred ---CCCchhhHHHHHHH----HH----hh-----hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchH
Q 010988 89 ---MLHSTDLLFNFFKS----LT----LL-----QLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSC 152 (496)
Q Consensus 89 ---~~~~~~~~~~~~~~----~~----~~-----~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~ 152 (496)
.............. .. .+ .+.+.+.+++ .++|++|+|.+..|+..+|+.+++|.+.+.+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 00000011111111 00 11 1334445566 6899999999888999999999999987433221
Q ss_pred HHHHHHhhhccccccccc-CCCCCccccCCCCC----CcCCccccccCCCCChHHHH-HHH-------------------
Q 010988 153 FCLLCLYNLHTSKVHENV-TSKSDYFVVPGLPD----QIEMTKVQVPLMRENSKDFG-ELV------------------- 207 (496)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~l~~----~~~l~~~~~~~~~~~~~~~~-~~~------------------- 207 (496)
.. ...... +.+..+.++|.... .+++..|... .+.... ...
T Consensus 152 ~~----------~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PF00201_consen 152 MY----------DLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKN----FLFYLYFRFIFRYFFSPQDKLYKKYFGFP 217 (500)
T ss_dssp CS----------CCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TT----SHHHHHHHHHHHHGGGS-TTS-EEESS-G
T ss_pred cc----------hhhhhccCCCCChHHhccccccCCCccchhhhhhh----hhhhhhhccccccchhhHHHHHhhhcccc
Confidence 11 011111 23344556664332 2222211111 111111 000
Q ss_pred ---HhhccccceEEEcChhhhhHHHHHHHHhhcCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEE
Q 010988 208 ---LAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVV 284 (496)
Q Consensus 208 ---~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI 284 (496)
.+...+...+++|+...++ ++.+.+|++++||++...+.+. ++.++..|++...++++|
T Consensus 218 ~~~~~~~~~~~l~l~ns~~~ld------~prp~~p~v~~vGgl~~~~~~~------------l~~~~~~~~~~~~~~~vv 279 (500)
T PF00201_consen 218 FSFRELLSNASLVLINSHPSLD------FPRPLLPNVVEVGGLHIKPAKP------------LPEELWNFLDSSGKKGVV 279 (500)
T ss_dssp GGCHHHHHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S----T------------CHHHHHHHTSTTTTTEEE
T ss_pred cccHHHHHHHHHHhhhccccCc------CCcchhhcccccCccccccccc------------cccccchhhhccCCCCEE
Confidence 1111223334556655554 2344568999999997764433 688999999985678999
Q ss_pred EEeeCCccCCChh-hHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhcccccc
Q 010988 285 YVCLGSICNLTSS-QMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIG 363 (496)
Q Consensus 285 ~vs~GS~~~~~~~-~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~ 363 (496)
||||||.....++ ....+++||++++++|||++.+.. +..+ ++|+++.+|+||.+||+|++++
T Consensus 280 ~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~-----------~~~l-----~~n~~~~~W~PQ~~lL~hp~v~ 343 (500)
T PF00201_consen 280 YVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP-----------PENL-----PKNVLIVKWLPQNDLLAHPRVK 343 (500)
T ss_dssp EEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH-----------GCHH-----HTTEEEESS--HHHHHTSTTEE
T ss_pred EEecCcccchhHHHHHHHHHHHHhhCCCcccccccccc-----------cccc-----cceEEEeccccchhhhhcccce
Confidence 9999999864444 478899999999999999997743 1111 4799999999999999999999
Q ss_pred ccccCCChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcC
Q 010988 364 GFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNE 443 (496)
Q Consensus 364 ~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~ 443 (496)
+||||||+||++||+++|||||++|+++||+.||+++ +++|+|+.+++. .+++++|.++|+++|+|
T Consensus 344 ~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~-------------~~~~~~l~~ai~~vl~~ 409 (500)
T PF00201_consen 344 LFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKN-------------DLTEEELRAAIREVLEN 409 (500)
T ss_dssp EEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGG-------------C-SHHHHHHHHHHHHHS
T ss_pred eeeeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEec-------------CCcHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999 699999999987 69999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhcCCCCCC
Q 010988 444 GGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIMHQPHSDH 490 (496)
Q Consensus 444 ~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 490 (496)
+ .|++||++++.++++- --+..+.+..-|+...++...+|
T Consensus 410 ~----~y~~~a~~ls~~~~~~---p~~p~~~~~~~ie~v~~~~~~~~ 449 (500)
T PF00201_consen 410 P----SYKENAKRLSSLFRDR---PISPLERAVWWIEYVARHGGAPH 449 (500)
T ss_dssp H----HHHHHHHHHHHTTT----------------------------
T ss_pred h----HHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCCCcc
Confidence 8 8999999999998844 23334555555555555544443
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.3e-42 Score=350.79 Aligned_cols=377 Identities=19% Similarity=0.194 Sum_probs=254.0
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCCCchhh
Q 010988 16 PFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLHSTDL 95 (496)
Q Consensus 16 ~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 95 (496)
.+|+.||++|++.||++|+++||+|+|++++.+.+.+++. ++.++.++.........+. .........
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 69 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPE---NTEEEPIDI 69 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcccccccc---ccCcchHHH
Confidence 5789999999999999999999999999999888777664 6888877633221111111 000111122
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhcccccccccCCCCC
Q 010988 96 LFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVHENVTSKSD 175 (496)
Q Consensus 96 ~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (496)
...+........+.+.++++. .+||+||+|.+++++..+|+.+|||+|.+++.+.... .++. ..
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~---~~~~----------~~- 133 (392)
T TIGR01426 70 IEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE---EFEE----------MV- 133 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc---cccc----------cc-
Confidence 232333333334455666666 7999999999888999999999999998764432110 0000 00
Q ss_pred ccccCCCCCCcCCccccccCCCCChHHHHHHHHhh------------ccccceEEEcChhhhhHHHHHHHHhhcCCceEE
Q 010988 176 YFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAA------------DMKSYGIIINTFEELESEYVKEYKKTKGGKVWC 243 (496)
Q Consensus 176 ~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~ 243 (496)
+...+.+........+.+. .....+.++... .......+..+ ++++......+++++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~-----~~~l~~~~~~~~~~~~~ 204 (392)
T TIGR01426 134 SPAGEGSAEEGAIAERGLA----EYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYT-----PKAFQPAGETFDDSFTF 204 (392)
T ss_pred cccchhhhhhhccccchhH----HHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeC-----ChHhCCCccccCCCeEE
Confidence 0000000000000000000 000111111110 01111123333 33444444567899999
Q ss_pred eCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCC
Q 010988 244 LGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNT 323 (496)
Q Consensus 244 VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 323 (496)
+||+..... +...|....+.+++||||+||......+.+..+++++.+.+.++||..+.+. .
T Consensus 205 ~Gp~~~~~~-----------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~-~ 266 (392)
T TIGR01426 205 VGPCIGDRK-----------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV-D 266 (392)
T ss_pred ECCCCCCcc-----------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC-C
Confidence 999865321 1223666666788999999998766667888899999999999999887654 2
Q ss_pred chhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHHHHH
Q 010988 324 SKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQV 403 (496)
Q Consensus 324 ~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~ 403 (496)
.....+ .++|+.+.+|+||.++|+++++ +|||||.||+.||+++|+|+|++|...||+.||+++ ++
T Consensus 267 ~~~~~~-----------~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l-~~ 332 (392)
T TIGR01426 267 PADLGE-----------LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI-AE 332 (392)
T ss_pred hhHhcc-----------CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-HH
Confidence 111111 2679999999999999999888 999999999999999999999999999999999999 69
Q ss_pred hhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh
Q 010988 404 LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIM 483 (496)
Q Consensus 404 ~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 483 (496)
+|+|+.+... .+++++|.++|.++|+|+ .|+++++++++.++. .+|. ..+.++|..++
T Consensus 333 ~g~g~~l~~~-------------~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~~---~~~~--~~aa~~i~~~~ 390 (392)
T TIGR01426 333 LGLGRHLPPE-------------EVTAEKLREAVLAVLSDP----RYAERLRKMRAEIRE---AGGA--RRAADEIEGFL 390 (392)
T ss_pred CCCEEEeccc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHH---cCCH--HHHHHHHHHhh
Confidence 9999998876 589999999999999987 899999999999883 3443 56666666553
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.6e-42 Score=348.28 Aligned_cols=385 Identities=15% Similarity=0.093 Sum_probs=247.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCC-CCCcc-
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPE-GSENF- 87 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~-~~~~~- 87 (496)
|||+|++.|+.||++|++.||++|++|||+|+|++++.+...++.. +++|+.++.......... .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 6999999999999999999999999999999999999877666543 688877753221100000 00000
Q ss_pred -cCC-CchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhcccc
Q 010988 88 -DML-HSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSK 165 (496)
Q Consensus 88 -~~~-~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (496)
... ........+......+.+.+.+.++. .+||+||+|.+.+++..+|+.+|||++.+++++........
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~------ 143 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFP------ 143 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCC------
Confidence 000 00111222233333444445555555 79999999998889999999999999998876543211000
Q ss_pred cccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhcc---------ccceEEEcChhhhhHHHHHHHHhh
Q 010988 166 VHENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADM---------KSYGIIINTFEELESEYVKEYKKT 236 (496)
Q Consensus 166 ~~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~s~~~le~~~~~~~~~~ 236 (496)
+.. +........................+...... .....+... ++++......
T Consensus 144 ----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 206 (401)
T cd03784 144 ----------PPL--GRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGF-----SPAVLPPPPD 206 (401)
T ss_pred ----------Ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEec-----CcccCCCCCC
Confidence 000 00000000000000000000111111111110 001111111 1122223345
Q ss_pred cCCceEEeC-cCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCC-hhhHHHHHHHHHhCCCCeE
Q 010988 237 KGGKVWCLG-PVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLT-SSQMIELGLGLEASKKPFI 314 (496)
Q Consensus 237 ~~~~v~~VG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~-~~~~~~~~~a~~~~~~~~i 314 (496)
++++..++| ++...+... ..+.++..|++. .+++||||+||..... ...+..++++++..+.++|
T Consensus 207 ~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i 273 (401)
T cd03784 207 WPRFDLVTGYGFRDVPYNG-----------PPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAI 273 (401)
T ss_pred ccccCcEeCCCCCCCCCCC-----------CCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEE
Confidence 566777775 333221111 136677888876 4679999999997644 4567789999999999999
Q ss_pred EEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccc
Q 010988 315 WVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQF 394 (496)
Q Consensus 315 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~ 394 (496)
|+++... . .. ...++||.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+
T Consensus 274 ~~~g~~~-~---------~~----~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~ 337 (401)
T cd03784 274 LSLGWGG-L---------GA----EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQP 337 (401)
T ss_pred EEccCcc-c---------cc----cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcH
Confidence 9987765 1 10 112689999999999999999888 999999999999999999999999999999
Q ss_pred hhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHH
Q 010988 395 CNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLM 474 (496)
Q Consensus 395 ~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~ 474 (496)
.||+++ +++|+|+.++.. .+++++|.++|+++|++ .++++++++++.++ +.+| ...
T Consensus 338 ~~a~~~-~~~G~g~~l~~~-------------~~~~~~l~~al~~~l~~-----~~~~~~~~~~~~~~---~~~g--~~~ 393 (401)
T cd03784 338 FWAARV-AELGAGPALDPR-------------ELTAERLAAALRRLLDP-----PSRRRAAALLRRIR---EEDG--VPS 393 (401)
T ss_pred HHHHHH-HHCCCCCCCCcc-------------cCCHHHHHHHHHHHhCH-----HHHHHHHHHHHHHH---hccC--HHH
Confidence 999999 699999999876 58999999999999984 55566666666664 2233 466
Q ss_pred HHHHHHH
Q 010988 475 IKLLIQD 481 (496)
Q Consensus 475 ~~~~~~~ 481 (496)
+.++|+.
T Consensus 394 ~~~~ie~ 400 (401)
T cd03784 394 AADVIER 400 (401)
T ss_pred HHHHHhh
Confidence 6666653
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-41 Score=335.89 Aligned_cols=393 Identities=18% Similarity=0.214 Sum_probs=251.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
+|||+++..|++||++|+++||++|.++||+|+|++++.+.+.+++. ++.|..++..........+...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~~~-- 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGKFA-- 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhhhh--
Confidence 58999999999999999999999999999999999999988888775 4566555422111000101000
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhccccccc
Q 010988 89 MLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVHE 168 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (496)
....+.. ...........+.+++.+ ..||+|+.|...+.+ .+++..++|++.........++..... ..
T Consensus 70 --~~~~~~~-~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 138 (406)
T COG1819 70 --GVKSFRR-LLQQFKKLIRELLELLRE--LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLP-----LP 138 (406)
T ss_pred --ccchhHH-HhhhhhhhhHHHHHHHHh--cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccC-----cc
Confidence 0001111 222223344455566666 699999999655544 899999999998544333221111000 00
Q ss_pred ccCCCCCccccCC--CCCCcCCccccccCCCCChHHHHHHHHhhcccc---ceEEEcChhhhhHHHHHHHH---hhcCCc
Q 010988 169 NVTSKSDYFVVPG--LPDQIEMTKVQVPLMRENSKDFGELVLAADMKS---YGIIINTFEELESEYVKEYK---KTKGGK 240 (496)
Q Consensus 169 ~~~~~~~~~~~p~--l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~s~~~le~~~~~~~~---~~~~~~ 240 (496)
.+... .....+. ++.. +..... ...........+........ ...+..+-..++..+.+... ..+|..
T Consensus 139 ~~~~~-~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 214 (406)
T COG1819 139 PVGIA-GKLPIPLYPLPPR--LVRPLI-FARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFI 214 (406)
T ss_pred ccccc-ccccccccccChh--hccccc-cchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCC
Confidence 00000 0000110 0000 000000 00000000000000000000 00001111111111111100 223455
Q ss_pred eEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCC
Q 010988 241 VWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGG 320 (496)
Q Consensus 241 v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 320 (496)
..++||+... ...+...|.. .++++||+|+||.... .++++.+++++..++.++|..++..
T Consensus 215 ~~~~~~~~~~----------------~~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~ 275 (406)
T COG1819 215 GPYIGPLLGE----------------AANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA 275 (406)
T ss_pred cCcccccccc----------------ccccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc
Confidence 6666666444 2334444533 3567999999999876 8889999999999999999998772
Q ss_pred CCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHH
Q 010988 321 NNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLI 400 (496)
Q Consensus 321 ~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~ 400 (496)
. . .. . ..++|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||.|+
T Consensus 276 ~-~--~~----~-------~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv 339 (406)
T COG1819 276 R-D--TL----V-------NVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV 339 (406)
T ss_pred c-c--cc----c-------cCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH
Confidence 2 1 11 1 13789999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHH
Q 010988 401 VQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQ 480 (496)
Q Consensus 401 ~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 480 (496)
|++|+|+.+..+ .++++.|+++|+++|+|+ .|+++++++++.+++. +| ...++++|.
T Consensus 340 -e~~G~G~~l~~~-------------~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~~~---~g--~~~~a~~le 396 (406)
T COG1819 340 -EELGAGIALPFE-------------ELTEERLRAAVNEVLADD----SYRRAAERLAEEFKEE---DG--PAKAADLLE 396 (406)
T ss_pred -HHcCCceecCcc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhhc---cc--HHHHHHHHH
Confidence 799999999997 699999999999999998 9999999999999944 66 577888888
Q ss_pred HHhcC
Q 010988 481 DIMHQ 485 (496)
Q Consensus 481 ~~~~~ 485 (496)
+....
T Consensus 397 ~~~~~ 401 (406)
T COG1819 397 EFARE 401 (406)
T ss_pred HHHhc
Confidence 86544
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.6e-39 Score=338.68 Aligned_cols=397 Identities=29% Similarity=0.439 Sum_probs=245.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEE---EEeeCCccccCCCCCCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQL---IEIQFPYQEAGIPEGSE 85 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~i~~~~~~~~l~~~~~ 85 (496)
..+++++++|+.||++|+..+|+.|+++||+||++++.......... . ....+.. ...++....+.++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-S----KSKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-c----cceeeeeeecChHHhhhhhhhhccchH
Confidence 56888999999999999999999999999999999988654432110 0 0000111 11111110111221111
Q ss_pred cccCCCchhhHHHHHHHHHhh-hHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcC-CCeEEEecchHHHHHHHhhhcc
Q 010988 86 NFDMLHSTDLLFNFFKSLTLL-QLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFN-IPRISFHGFSCFCLLCLYNLHT 163 (496)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~ 163 (496)
... .........+...+... ......+......++|++|+|.+..|...++.... ++..++.+..+.......+..
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~- 157 (496)
T KOG1192|consen 80 DDD-LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP- 157 (496)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc-
Confidence 100 00000112222222222 22222222221134999999987667777776664 888888777776654332221
Q ss_pred cccccccCCCCCccccCCCCCCc-----CCccccccCCCCCh-------------HHHHHHHHhhc----cccceEEEcC
Q 010988 164 SKVHENVTSKSDYFVVPGLPDQI-----EMTKVQVPLMRENS-------------KDFGELVLAAD----MKSYGIIINT 221 (496)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~l~~~~-----~l~~~~~~~~~~~~-------------~~~~~~~~~~~----~~~~~~l~~s 221 (496)
..++|...... .+..+...+....+ ........... .....++.++
T Consensus 158 ------------~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (496)
T KOG1192|consen 158 ------------LSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNA 225 (496)
T ss_pred ------------ccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcC
Confidence 11333222110 00000000000000 00011110000 1111233333
Q ss_pred -hhhhhHHHHHHH-HhhcCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCC--eEEEEeeCCcc---CC
Q 010988 222 -FEELESEYVKEY-KKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPN--SVVYVCLGSIC---NL 294 (496)
Q Consensus 222 -~~~le~~~~~~~-~~~~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~vI~vs~GS~~---~~ 294 (496)
+..+++..+..+ +.+..++++.|||+....... ......+|++..+.. ++|||||||.. ..
T Consensus 226 ~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 226 SFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ------------KSPLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred eEEEEccCcccCCCCCCCCCCceEECcEEecCccc------------cccccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 555554444334 344468999999998762221 011344555554443 79999999998 68
Q ss_pred ChhhHHHHHHHHHhC-CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhh-hccccccccccCCChh
Q 010988 295 TSSQMIELGLGLEAS-KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLI-LSHPSIGGFLTHCGWN 372 (496)
Q Consensus 295 ~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~-l~~~~~~~~I~HGG~g 372 (496)
+.++...++.|++.+ ++.|||++.... ... +++++..+ .++||+..+|+||.++ |.|+++++||||||+|
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~~-~~~------~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~n 365 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPDD-SIY------FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWN 365 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCCc-chh------hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCccc
Confidence 999999999999999 888999998764 110 12222111 2568999999999998 5999999999999999
Q ss_pred hHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHH
Q 010988 373 SSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRK 452 (496)
Q Consensus 373 s~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~ 452 (496)
|++|++++|||||++|+++||+.||+++ ++.|.|..+.+. ..+.+.+.+++..+++++ +|++
T Consensus 366 St~E~~~~GvP~v~~Plf~DQ~~Na~~i-~~~g~~~v~~~~-------------~~~~~~~~~~~~~il~~~----~y~~ 427 (496)
T KOG1192|consen 366 STLESIYSGVPMVCVPLFGDQPLNARLL-VRHGGGGVLDKR-------------DLVSEELLEAIKEILENE----EYKE 427 (496)
T ss_pred HHHHHHhcCCceecCCccccchhHHHHH-HhCCCEEEEehh-------------hcCcHHHHHHHHHHHcCh----HHHH
Confidence 9999999999999999999999999999 588888888877 466666999999999988 8999
Q ss_pred HHHHHHHHHH
Q 010988 453 RAREFQMMAK 462 (496)
Q Consensus 453 ~a~~l~~~~~ 462 (496)
+++++++..+
T Consensus 428 ~~~~l~~~~~ 437 (496)
T KOG1192|consen 428 AAKRLSEILR 437 (496)
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=2e-26 Score=227.38 Aligned_cols=315 Identities=18% Similarity=0.178 Sum_probs=199.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
|.||+|.+.++.||++|.++||++|.++||+|+|++.....+. +. .+..++.++.++.. ++.. ..
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l-----~~~~g~~~~~~~~~----~l~~----~~ 65 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TI-----IEKENIPYYSISSG----KLRR----YF 65 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--cc-----CcccCCcEEEEecc----CcCC----Cc
Confidence 3489999999999999999999999999999999997654321 11 12235777666511 1111 00
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc--chHHHHHhcCCCeEEEecchHHHHHHHhhhccccc
Q 010988 89 MLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP--WTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKV 166 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~--~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 166 (496)
....+......... .-...+++++ .+||+||+...+. .+..+|+.+++|+++.
T Consensus 66 ---~~~~~~~~~~~~~~-~~~~~~i~~~--~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~------------------- 120 (352)
T PRK12446 66 ---DLKNIKDPFLVMKG-VMDAYVRIRK--LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH------------------- 120 (352)
T ss_pred ---hHHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEecCchhhHHHHHHHHHcCCCEEEE-------------------
Confidence 11112222222222 2233456777 7999999985444 4678999999999972
Q ss_pred ccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcC-CceEEeC
Q 010988 167 HENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKG-GKVWCLG 245 (496)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~~v~~VG 245 (496)
+...+|++.++ +..++ +..+++ ++++ ....++ .+++++|
T Consensus 121 --------e~n~~~g~~nr-----------------~~~~~------a~~v~~-~f~~--------~~~~~~~~k~~~tG 160 (352)
T PRK12446 121 --------ESDMTPGLANK-----------------IALRF------ASKIFV-TFEE--------AAKHLPKEKVIYTG 160 (352)
T ss_pred --------CCCCCccHHHH-----------------HHHHh------hCEEEE-Eccc--------hhhhCCCCCeEEEC
Confidence 11223333221 11111 122222 2221 112233 5789999
Q ss_pred cCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCCh-hhHHHHHHHHHhCCCCeEEEEeCCCCCc
Q 010988 246 PVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTS-SQMIELGLGLEASKKPFIWVIRGGNNTS 324 (496)
Q Consensus 246 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~ 324 (496)
+.+....... ......+.+.-.+++++|+|..||...... +.+..++..+. .+.+++|+++...
T Consensus 161 ~Pvr~~~~~~-----------~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~--- 225 (352)
T PRK12446 161 SPVREEVLKG-----------NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN--- 225 (352)
T ss_pred CcCCcccccc-----------cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch---
Confidence 6543321100 011111222223457799999999986332 22333444332 2578899887654
Q ss_pred hhhhhhhhhHHHHHHhCCCcEEEeCcc-h-hhhhhccccccccccCCChhhHHHHHHhCCcEeccCCc-----cccchhH
Q 010988 325 KEIQEWLLEEKFEERVKGRGILILGWA-P-QVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLF-----GDQFCNE 397 (496)
Q Consensus 325 ~~~~~~~lp~~~~~~~~~~nv~v~~~~-p-q~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~-----~DQ~~na 397 (496)
+.+.... ..++.+..|+ + ..+++..+++ +|||||.+|+.|++++|+|+|++|+. .||..||
T Consensus 226 -------~~~~~~~---~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na 293 (352)
T PRK12446 226 -------LDDSLQN---KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNA 293 (352)
T ss_pred -------HHHHHhh---cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHH
Confidence 2221111 1356667887 4 5578999998 99999999999999999999999984 4899999
Q ss_pred HHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCC
Q 010988 398 KLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEG 444 (496)
Q Consensus 398 ~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~ 444 (496)
..+ +++|+|..+..+ .++++.|.++|.++++|+
T Consensus 294 ~~l-~~~g~~~~l~~~-------------~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 294 ESF-ERQGYASVLYEE-------------DVTVNSLIKHVEELSHNN 326 (352)
T ss_pred HHH-HHCCCEEEcchh-------------cCCHHHHHHHHHHHHcCH
Confidence 999 599999999876 589999999999999875
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=5.4e-25 Score=216.15 Aligned_cols=306 Identities=18% Similarity=0.170 Sum_probs=195.5
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 10 PHFVLFPFL-AQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 10 ~~il~~~~~-~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
|||+|...+ +.||+.+.++||++| |||+|+|++.....+.+.+ .+....++..... ....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~----~~~~--- 61 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGPI----QENG--- 61 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceEe----ccCC---
Confidence 699999887 699999999999999 6999999999866554432 2444444311111 1000
Q ss_pred CCCchhhHHHHH---HHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhcccc
Q 010988 89 MLHSTDLLFNFF---KSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSK 165 (496)
Q Consensus 89 ~~~~~~~~~~~~---~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (496)
............ .......+.+.++++. .+||+||+| +.+.+..+|+..|||++.+.........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~~--------- 129 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLRE--FRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLHP--------- 129 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHcccc---------
Confidence 111111122111 1223344455667777 799999999 5555778999999999998766543310
Q ss_pred cccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHh-h-ccccceEEEcChhhhhHHHHHHHHhhcCCceEE
Q 010988 166 VHENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLA-A-DMKSYGIIINTFEELESEYVKEYKKTKGGKVWC 243 (496)
Q Consensus 166 ~~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~ 243 (496)
....+.- ........+... . ...+...+.-++. .. .....++.+
T Consensus 130 ----------~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~~~ 175 (318)
T PF13528_consen 130 ----------NFWLPWD---------------QDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFFRVPF 175 (318)
T ss_pred ----------cCCcchh---------------hhHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccccccc
Confidence 0000000 001122222221 1 2223333332322 10 111245667
Q ss_pred eCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCC-CCeEEEEeCCCC
Q 010988 244 LGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASK-KPFIWVIRGGNN 322 (496)
Q Consensus 244 VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~ 322 (496)
+||+....... ... .+++.|+|++|..... .++++++..+ .++++. +...
T Consensus 176 ~~p~~~~~~~~-------------------~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~- 226 (318)
T PF13528_consen 176 VGPIIRPEIRE-------------------LPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA- 226 (318)
T ss_pred cCchhcccccc-------------------cCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc-
Confidence 88875432211 111 1345899999998542 6667777765 666665 4432
Q ss_pred CchhhhhhhhhHHHHHHhCCCcEEEeCcc--hhhhhhccccccccccCCChhhHHHHHHhCCcEeccCC--ccccchhHH
Q 010988 323 TSKEIQEWLLEEKFEERVKGRGILILGWA--PQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPL--FGDQFCNEK 398 (496)
Q Consensus 323 ~~~~~~~~~lp~~~~~~~~~~nv~v~~~~--pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~--~~DQ~~na~ 398 (496)
. -+ ..+|+.+.+|. ...++|..+++ +|||||.||++|++++|+|+|++|. ..+|..||+
T Consensus 227 ~--------~~-------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~ 289 (318)
T PF13528_consen 227 A--------DP-------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNAR 289 (318)
T ss_pred c--------cc-------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHH
Confidence 0 11 26799999886 46779988888 9999999999999999999999999 789999999
Q ss_pred HHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHH
Q 010988 399 LIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINML 440 (496)
Q Consensus 399 r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 440 (496)
++ +++|+|+.++.+ +++++.|.+.|+++
T Consensus 290 ~l-~~~G~~~~~~~~-------------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 290 KL-EELGLGIVLSQE-------------DLTPERLAEFLERL 317 (318)
T ss_pred HH-HHCCCeEEcccc-------------cCCHHHHHHHHhcC
Confidence 99 799999999876 69999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.5e-23 Score=202.86 Aligned_cols=326 Identities=19% Similarity=0.223 Sum_probs=205.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGA-AITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
++|++...++.||+.|.++|+++|.++|+ +|.+..+....+.... +..++.++.|+... .......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~-------~~~~~~~~~I~~~~-----~~~~~~~- 67 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV-------KQYGIEFELIPSGG-----LRRKGSL- 67 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec-------cccCceEEEEeccc-----ccccCcH-
Confidence 47889999999999999999999999999 5777755543322111 12367777776221 1111111
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc--chHHHHHhcCCCeEEEecchHHHHHHHhhhccccc
Q 010988 89 MLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP--WTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKV 166 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~--~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 166 (496)
..+...+..+ .-....++++++ .+||+||+-.-+. .+..+|..+|||.++
T Consensus 68 -----~~~~~~~~~~-~~~~~a~~il~~--~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i-------------------- 119 (357)
T COG0707 68 -----KLLKAPFKLL-KGVLQARKILKK--LKPDVVIGTGGYVSGPVGIAAKLLGIPVII-------------------- 119 (357)
T ss_pred -----HHHHHHHHHH-HHHHHHHHHHHH--cCCCEEEecCCccccHHHHHHHhCCCCEEE--------------------
Confidence 1111111111 123455677888 7999999964444 667788889999998
Q ss_pred ccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCCceEEeC-
Q 010988 167 HENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWCLG- 245 (496)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~VG- 245 (496)
++...+||+.+++ ..+ .+..+. .+++..+ ...-+.+++.+|
T Consensus 120 -------hEqn~~~G~ank~-----------------~~~------~a~~V~-~~f~~~~-------~~~~~~~~~~tG~ 161 (357)
T COG0707 120 -------HEQNAVPGLANKI-----------------LSK------FAKKVA-SAFPKLE-------AGVKPENVVVTGI 161 (357)
T ss_pred -------EecCCCcchhHHH-----------------hHH------hhceee-ecccccc-------ccCCCCceEEecC
Confidence 4555666665421 111 111122 2222111 001124688888
Q ss_pred cCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHH-HHHHHHhC--CCCeEEEEeCCCC
Q 010988 246 PVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIE-LGLGLEAS--KKPFIWVIRGGNN 322 (496)
Q Consensus 246 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~-~~~a~~~~--~~~~i~~~~~~~~ 322 (496)
|+...-.. . +.....+... .++++|+|..||..... ++. +.+++..+ +.++++..+...
T Consensus 162 Pvr~~~~~-~------------~~~~~~~~~~-~~~~~ilV~GGS~Ga~~---ln~~v~~~~~~l~~~~~v~~~~G~~~- 223 (357)
T COG0707 162 PVRPEFEE-L------------PAAEVRKDGR-LDKKTILVTGGSQGAKA---LNDLVPEALAKLANRIQVIHQTGKND- 223 (357)
T ss_pred cccHHhhc-c------------chhhhhhhcc-CCCcEEEEECCcchhHH---HHHHHHHHHHHhhhCeEEEEEcCcch-
Confidence 66432111 0 1111111111 15679999999997622 333 33333333 467777776653
Q ss_pred CchhhhhhhhhHHHHHHhCCCc-EEEeCcchh-hhhhccccccccccCCChhhHHHHHHhCCcEeccCC-cc---ccchh
Q 010988 323 TSKEIQEWLLEEKFEERVKGRG-ILILGWAPQ-VLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPL-FG---DQFCN 396 (496)
Q Consensus 323 ~~~~~~~~~lp~~~~~~~~~~n-v~v~~~~pq-~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~-~~---DQ~~n 396 (496)
.. .........+ +.+.+|... .+++..+++ +||++|.+|+.|++++|+|+|.+|+ .+ ||..|
T Consensus 224 ----~~------~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~N 291 (357)
T COG0707 224 ----LE------ELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYN 291 (357)
T ss_pred ----HH------HHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHH
Confidence 11 1111112233 888899875 458888887 9999999999999999999999998 33 89999
Q ss_pred HHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 397 EKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 397 a~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
|..+ ++.|.|..++.. .++.++|.+.|.+++.++...+.|+++++++.
T Consensus 292 A~~l-~~~gaa~~i~~~-------------~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 292 AKFL-EKAGAALVIRQS-------------ELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HHHH-HhCCCEEEeccc-------------cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999 699999999887 59999999999999998655555555555443
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=5.5e-22 Score=194.52 Aligned_cols=307 Identities=16% Similarity=0.108 Sum_probs=174.9
Q ss_pred EEEEEcCCC-ccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeE-EEEeeCCccccCCCCCCCccc
Q 010988 11 HFVLFPFLA-QGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQ-LIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 11 ~il~~~~~~-~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~i~~~~~~~~l~~~~~~~~ 88 (496)
||++...+. .||+.|.++||++|.+ ||+|+|++.......+++. ++. +..+|..... ...+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~--~~~~----- 63 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLK--GEDG----- 63 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEe--ecCC-----
Confidence 577766654 6999999999999999 9999999887644333332 233 2222211000 0011
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhccccccc
Q 010988 89 MLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVHE 168 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (496)
.......................+++++ .+||+||+| ..+.+..+|+.+|||++.+..+....
T Consensus 64 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~--~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~-------------- 126 (321)
T TIGR00661 64 KVNIVKTLRNKEYSPKKAIRREINIIRE--YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR-------------- 126 (321)
T ss_pred cCcHHHHHHhhccccHHHHHHHHHHHHh--cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc--------------
Confidence 0001111110001101223345577788 799999999 66667889999999999876532111
Q ss_pred ccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHH-hhccccceEEEcChhhhhHHHHHHHHhhcCCceE-EeCc
Q 010988 169 NVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVL-AADMKSYGIIINTFEELESEYVKEYKKTKGGKVW-CLGP 246 (496)
Q Consensus 169 ~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~-~VGp 246 (496)
.|+.... ......++. .+...+.......+.... ...|+... .-+|
T Consensus 127 ----------~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~p~~~~~~~~~ 174 (321)
T TIGR00661 127 ----------YPLKTDL--------------IVYPTMAALRIFNERCERFIVPDYPFPY--------TICPKIIKNMEGP 174 (321)
T ss_pred ----------CCcccch--------------hHHHHHHHHHHhccccceEeeecCCCCC--------CCCccccccCCCc
Confidence 0111000 000111111 111222222222221111 00010000 0011
Q ss_pred CcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCC-CeEEEEeCCCCCch
Q 010988 247 VSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKK-PFIWVIRGGNNTSK 325 (496)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~ 325 (496)
+ ...+..++... +++.|+|.+|+.. ...+++++++.+. .+| ++... .
T Consensus 175 ~-------------------~~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~~~~i--~~~~~-~-- 222 (321)
T TIGR00661 175 L-------------------IRYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIANVKFV--CYSYE-V-- 222 (321)
T ss_pred c-------------------cchhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCCeEEE--EeCCC-C--
Confidence 1 01122223222 3457888888853 2455677776543 444 22222 0
Q ss_pred hhhhhhhhHHHHHHhCCCcEEEeCcch--hhhhhccccccccccCCChhhHHHHHHhCCcEeccCCcc--ccchhHHHHH
Q 010988 326 EIQEWLLEEKFEERVKGRGILILGWAP--QVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFG--DQFCNEKLIV 401 (496)
Q Consensus 326 ~~~~~~lp~~~~~~~~~~nv~v~~~~p--q~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--DQ~~na~r~~ 401 (496)
..+. .++|+.+.+|.| ..+.|..+++ +|||||.+|++|++++|+|+|++|... ||..||+.+
T Consensus 223 ------~~~~-----~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l- 288 (321)
T TIGR00661 223 ------AKNS-----YNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL- 288 (321)
T ss_pred ------Cccc-----cCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-
Confidence 1111 157999999997 4567777777 999999999999999999999999955 899999999
Q ss_pred HHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCCh
Q 010988 402 QVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGG 445 (496)
Q Consensus 402 e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~ 445 (496)
+++|+|+.++.. .+ ++.+++.++++|+.
T Consensus 289 ~~~g~~~~l~~~-------------~~---~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 289 EDLGCGIALEYK-------------EL---RLLEAILDIRNMKR 316 (321)
T ss_pred HHCCCEEEcChh-------------hH---HHHHHHHhcccccc
Confidence 699999999776 24 67778888888873
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.85 E-value=2.9e-19 Score=178.41 Aligned_cols=328 Identities=16% Similarity=0.107 Sum_probs=193.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
||||+|+..+..||...++.|+++|.++||+|++++.+.... .... ...++.++.++... ....
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--~~~~-----~~~g~~~~~~~~~~----~~~~----- 64 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME--ARLV-----PKAGIEFHFIPSGG----LRRK----- 64 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh--hhcc-----ccCCCcEEEEeccC----cCCC-----
Confidence 589999998889999999999999999999999998865211 0100 11256666664211 1100
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCC--CcchHHHHHhcCCCeEEEecchHHHHHHHhhhccccc
Q 010988 89 MLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMC--YPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKV 166 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~--~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 166 (496)
............ -.....+.+++++ .+||+|++... .+.+..+++..++|++.....
T Consensus 65 --~~~~~l~~~~~~-~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~---------------- 123 (357)
T PRK00726 65 --GSLANLKAPFKL-LKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN---------------- 123 (357)
T ss_pred --ChHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC----------------
Confidence 000111111111 1223456677777 79999999953 224455678899999862110
Q ss_pred ccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCCceEEeCc
Q 010988 167 HENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWCLGP 246 (496)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~VGp 246 (496)
..++ ...++. ...++.++..+...+ . ..-+.+++++|+
T Consensus 124 -----------~~~~---------------------~~~r~~--~~~~d~ii~~~~~~~-----~---~~~~~~i~vi~n 161 (357)
T PRK00726 124 -----------AVPG---------------------LANKLL--ARFAKKVATAFPGAF-----P---EFFKPKAVVTGN 161 (357)
T ss_pred -----------CCcc---------------------HHHHHH--HHHhchheECchhhh-----h---ccCCCCEEEECC
Confidence 0000 001110 011222332221111 0 122367888985
Q ss_pred CcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCC--CeEEEEeCCCCCc
Q 010988 247 VSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKK--PFIWVIRGGNNTS 324 (496)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~--~~i~~~~~~~~~~ 324 (496)
........ ....-.+ +...+++++|++..|+... ......+.+|+.+... .+++.++.+. .
T Consensus 162 ~v~~~~~~------------~~~~~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~-~- 224 (357)
T PRK00726 162 PVREEILA------------LAAPPAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGD-L- 224 (357)
T ss_pred CCChHhhc------------ccchhhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCc-H-
Confidence 43321100 0000011 1112234577776666432 1122233366665433 3455556554 1
Q ss_pred hhhhhhhhhHHHHHHhCCCcEEEeCcc-hhhhhhccccccccccCCChhhHHHHHHhCCcEeccCC----ccccchhHHH
Q 010988 325 KEIQEWLLEEKFEERVKGRGILILGWA-PQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPL----FGDQFCNEKL 399 (496)
Q Consensus 325 ~~~~~~~lp~~~~~~~~~~nv~v~~~~-pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~r 399 (496)
.+ +.+.. . ..-++.+.+|+ +..+++..+++ +|+|+|.++++||+++|+|+|++|. ..+|..|+..
T Consensus 225 ---~~--~~~~~-~--~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~ 294 (357)
T PRK00726 225 ---EE--VRAAY-A--AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARA 294 (357)
T ss_pred ---HH--HHHHh-h--cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHH
Confidence 11 21111 1 12248888998 45689999998 9999999999999999999999997 4689999999
Q ss_pred HHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010988 400 IVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRARE 456 (496)
Q Consensus 400 ~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~ 456 (496)
+ .+.|.|..+..+ .++++.|.++|.++++|++.++.|++++++
T Consensus 295 i-~~~~~g~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~ 337 (357)
T PRK00726 295 L-VDAGAALLIPQS-------------DLTPEKLAEKLLELLSDPERLEAMAEAARA 337 (357)
T ss_pred H-HHCCCEEEEEcc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 9 599999999876 478999999999999987555555554433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.80 E-value=1.9e-17 Score=164.81 Aligned_cols=328 Identities=19% Similarity=0.152 Sum_probs=192.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDML 90 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 90 (496)
+|++...++.||....+.+++.|.++||+|++++...... . ... ...+++++.++.... ... .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~-~~~-----~~~~~~~~~~~~~~~----~~~-~----- 63 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-A-RLV-----PKAGIPLHTIPVGGL----RRK-G----- 63 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-h-hcc-----cccCCceEEEEecCc----CCC-C-----
Confidence 5888888889999999999999999999999998764221 1 100 112466666652211 000 0
Q ss_pred CchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCC--CcchHHHHHhcCCCeEEEecchHHHHHHHhhhccccccc
Q 010988 91 HSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMC--YPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVHE 168 (496)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~--~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (496)
....+...... -.....+.+++++ .+||+|++... ..++..+++..++|++.....
T Consensus 64 -~~~~~~~~~~~-~~~~~~~~~~i~~--~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~------------------ 121 (350)
T cd03785 64 -SLKKLKAPFKL-LKGVLQARKILKK--FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN------------------ 121 (350)
T ss_pred -hHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC------------------
Confidence 00111111111 1223456677777 79999998743 334567788899999862100
Q ss_pred ccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCCceEEeCcCc
Q 010988 169 NVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWCLGPVS 248 (496)
Q Consensus 169 ~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~VGpl~ 248 (496)
..++ ...++. ...++.++..+-...+ . ..+.++.+||...
T Consensus 122 ---------~~~~---------------------~~~~~~--~~~~~~vi~~s~~~~~-----~---~~~~~~~~i~n~v 161 (350)
T cd03785 122 ---------AVPG---------------------LANRLL--ARFADRVALSFPETAK-----Y---FPKDKAVVTGNPV 161 (350)
T ss_pred ---------CCcc---------------------HHHHHH--HHhhCEEEEcchhhhh-----c---CCCCcEEEECCCC
Confidence 0000 011111 1123444444322211 1 1235788888543
Q ss_pred CCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCC-hhhHHHHHHHHHhCCCCeEEEEeCCCCCchhh
Q 010988 249 LCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLT-SSQMIELGLGLEASKKPFIWVIRGGNNTSKEI 327 (496)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~-~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 327 (496)
...... .... .+.+...+++.+|++..|+..... .+.+..++..+...+..+++.++.+. .+.
T Consensus 162 ~~~~~~------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~--~~~- 225 (350)
T cd03785 162 REEILA------------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD--LEE- 225 (350)
T ss_pred chHHhh------------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc--HHH-
Confidence 221100 0011 222222234456767666664311 11222333333333445556665543 111
Q ss_pred hhhhhhHHHHHHhCCCcEEEeCcc-hhhhhhccccccccccCCChhhHHHHHHhCCcEeccCC----ccccchhHHHHHH
Q 010988 328 QEWLLEEKFEERVKGRGILILGWA-PQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPL----FGDQFCNEKLIVQ 402 (496)
Q Consensus 328 ~~~~lp~~~~~~~~~~nv~v~~~~-pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~r~~e 402 (496)
+.+...+ . .+|+.+.+|+ +...+|..+++ +|+++|.+++.||+++|+|+|++|. ..+|..|+..+ .
T Consensus 226 ----l~~~~~~-~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l-~ 296 (350)
T cd03785 226 ----VKKAYEE-L-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARAL-V 296 (350)
T ss_pred ----HHHHHhc-c-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHH-H
Confidence 2211111 1 4689999998 55678988888 9999999999999999999999986 35788999999 4
Q ss_pred HhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010988 403 VLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAR 455 (496)
Q Consensus 403 ~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~ 455 (496)
+.|.|..++.. ..+.++|.++|.++++|+...+.|.++++
T Consensus 297 ~~g~g~~v~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 336 (350)
T cd03785 297 KAGAAVLIPQE-------------ELTPERLAAALLELLSDPERLKAMAEAAR 336 (350)
T ss_pred hCCCEEEEecC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 89999998765 36899999999999987744444544443
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.74 E-value=2.7e-16 Score=157.63 Aligned_cols=348 Identities=14% Similarity=0.070 Sum_probs=199.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCC--CeEEEEeeCCccccCCCCCCCcc
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGL--PLQLIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~i~~~~~~~~l~~~~~~~ 87 (496)
+||+|.+.++.||+.|. +|+++|.++|++|+|+..... .+++. |. .+.+..++ ..++
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~-------g~~~~~~~~~l~--------v~G~--- 64 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAE-------GCEVLYSMEELS--------VMGL--- 64 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhC-------cCccccChHHhh--------hccH---
Confidence 68999999999999999 999999999999999986532 22221 11 12222211 0010
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEE-cCCCcc--hHHHHHhcCCCeEEEecchHHHHHHHhhhccc
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVS-DMCYPW--TVDTAARFNIPRISFHGFSCFCLLCLYNLHTS 164 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~-D~~~~~--a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 164 (496)
.+.+..+.... .......+++++ .+||+||. |+.++. .+.+|+.+|||++.+.+.-.+.
T Consensus 65 -----~~~l~~~~~~~-~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa---------- 126 (385)
T TIGR00215 65 -----REVLGRLGRLL-KIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA---------- 126 (385)
T ss_pred -----HHHHHHHHHHH-HHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh----------
Confidence 01122222221 233467777888 79999985 543333 2337888999999743111111
Q ss_pred ccccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCCceEEe
Q 010988 165 KVHENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWCL 244 (496)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~V 244 (496)
+.. +. ...+.+. ++.++.. ++ .+.++ +.. .+.+..+|
T Consensus 127 -----------------w~~-------------~~-~r~l~~~------~d~v~~~-~~-~e~~~---~~~-~g~~~~~v 163 (385)
T TIGR00215 127 -----------------WRK-------------WR-AKKIEKA------TDFLLAI-LP-FEKAF---YQK-KNVPCRFV 163 (385)
T ss_pred -----------------cCc-------------ch-HHHHHHH------HhHhhcc-CC-CcHHH---HHh-cCCCEEEE
Confidence 000 00 1122211 1222222 21 12222 222 23467789
Q ss_pred C-cCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhC-----CCCeEEEEe
Q 010988 245 G-PVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS-----KKPFIWVIR 318 (496)
Q Consensus 245 G-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~ 318 (496)
| |+......... ...+..+-+.-.+++++|.+-.||....-......++++++.+ +.++++...
T Consensus 164 GnPv~~~~~~~~~----------~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 164 GHPLLDAIPLYKP----------DRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred CCchhhhccccCC----------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 9 44221110000 1122222222233556888888887652123344555555442 345555444
Q ss_pred CCCCCchhhhhhhhhHHHHHHhC-CCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEecc----CCcc--
Q 010988 319 GGNNTSKEIQEWLLEEKFEERVK-GRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITW----PLFG-- 391 (496)
Q Consensus 319 ~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~----P~~~-- 391 (496)
... ...... .+..... ...+....+ ....++..+++ +|+-.|..|+ |++++|+|+|++ |+..
T Consensus 234 ~~~-~~~~~~------~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~ 302 (385)
T TIGR00215 234 NFK-RRLQFE------QIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLI 302 (385)
T ss_pred Cch-hHHHHH------HHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHH
Confidence 332 111111 1111111 223433332 33458877777 9999999988 999999999999 7642
Q ss_pred -------ccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHH
Q 010988 392 -------DQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEG----GERENRRKRAREFQMM 460 (496)
Q Consensus 392 -------DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~----~~~~~~~~~a~~l~~~ 460 (496)
+|..|+..++ ..++...+... .++++.|.+.+.++|+|+ ++++.+++..++++..
T Consensus 303 ~~~~~~~~~~~~~nil~-~~~~~pel~q~-------------~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 368 (385)
T TIGR00215 303 ARRLVKTDYISLPNILA-NRLLVPELLQE-------------ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQR 368 (385)
T ss_pred HHHHHcCCeeeccHHhc-CCccchhhcCC-------------CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHH
Confidence 3888999995 88888877665 599999999999999998 8888999999998888
Q ss_pred HHHHhhhCCChHHHHHHH
Q 010988 461 AKRATEETGSSSLMIKLL 478 (496)
Q Consensus 461 ~~~a~~~~g~~~~~~~~~ 478 (496)
+. ++|.+.+.++.+
T Consensus 369 l~----~~~~~~~~a~~i 382 (385)
T TIGR00215 369 IY----CNADSERAAQAV 382 (385)
T ss_pred hc----CCCHHHHHHHHH
Confidence 74 345555554443
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.73 E-value=1.1e-15 Score=152.08 Aligned_cols=325 Identities=17% Similarity=0.151 Sum_probs=177.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDM 89 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~ 89 (496)
|||+|++.+..||+.....||++|.++||+|++++.+.... .... ...+++++.++... ....
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~-----~~~g~~~~~i~~~~--------~~~~-- 63 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLV-----PKAGIEFYFIPVGG--------LRRK-- 63 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hccc-----ccCCCceEEEeccC--------cCCC--
Confidence 48999999999999988899999999999999998753211 0100 01256666665211 0000
Q ss_pred CCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc--chHHHHHhcCCCeEEEecchHHHHHHHhhhcccccc
Q 010988 90 LHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP--WTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVH 167 (496)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~--~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (496)
.....+...... -.....+.+++++ .+||+|++..... .+..+++.+++|++.....
T Consensus 64 -~~~~~l~~~~~~-~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~----------------- 122 (348)
T TIGR01133 64 -GSFRLIKTPLKL-LKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN----------------- 122 (348)
T ss_pred -ChHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC-----------------
Confidence 000111111111 1123356677887 7999999975332 3455678899999742100
Q ss_pred cccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCCceEEeCcC
Q 010988 168 ENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWCLGPV 247 (496)
Q Consensus 168 ~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~VGpl 247 (496)
..+ . ...++. ...++.++..+-.. ...+ ...+||.-
T Consensus 123 ----------~~~---~------------------~~~~~~--~~~~d~ii~~~~~~---------~~~~--~~~~i~n~ 158 (348)
T TIGR01133 123 ----------AVP---G------------------LTNKLL--SRFAKKVLISFPGA---------KDHF--EAVLVGNP 158 (348)
T ss_pred ----------CCc---c------------------HHHHHH--HHHhCeeEECchhH---------hhcC--CceEEcCC
Confidence 000 0 001111 12234444433211 1111 23566632
Q ss_pred cCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHh---CCCCeEEEEeCCCCCc
Q 010988 248 SLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA---SKKPFIWVIRGGNNTS 324 (496)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~ 324 (496)
....... .+.. .+.+.-.+++++|.+..|+... ......+.++++. .+.++++..+...
T Consensus 159 v~~~~~~------------~~~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~--- 220 (348)
T TIGR01133 159 VRQEIRS------------LPVP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND--- 220 (348)
T ss_pred cCHHHhc------------ccch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch---
Confidence 2110000 0000 0112112234455555555542 2222223345543 3455655444332
Q ss_pred hhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCc---cccchhHHHHH
Q 010988 325 KEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLF---GDQFCNEKLIV 401 (496)
Q Consensus 325 ~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~---~DQ~~na~r~~ 401 (496)
... +.... ......+++...+-+...++..+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+
T Consensus 221 --~~~--l~~~~-~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i- 292 (348)
T TIGR01133 221 --LEK--VKNVY-QELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL- 292 (348)
T ss_pred --HHH--HHHHH-hhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-
Confidence 111 21111 1111123322222255678888888 99999988999999999999999873 4678899899
Q ss_pred HHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010988 402 QVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAR 455 (496)
Q Consensus 402 e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~ 455 (496)
++.|.|..++.. ..++++|.++|.++++|++..+.|.++++
T Consensus 293 ~~~~~G~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 333 (348)
T TIGR01133 293 EDLGAGLVIRQK-------------ELLPEKLLEALLKLLLDPANLEAMAEAAR 333 (348)
T ss_pred HHCCCEEEEecc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 599999988765 46899999999999998754444444443
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.73 E-value=8.4e-16 Score=142.98 Aligned_cols=338 Identities=14% Similarity=0.149 Sum_probs=197.7
Q ss_pred CCCCEEEEEcCC--CccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCC
Q 010988 7 SQQPHFVLFPFL--AQGHMIPMIDIGRLLAQN--GAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPE 82 (496)
Q Consensus 7 ~~~~~il~~~~~--~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~ 82 (496)
++++||+|++.- +.||+..++.||+.|++. |.+|++++...-...+. ...++.++.+| .+..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~--------~~~gVd~V~LP------sl~k 72 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP--------GPAGVDFVKLP------SLIK 72 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC--------CcccCceEecC------ceEe
Confidence 567899999974 699999999999999999 99999998875444332 12579999987 2222
Q ss_pred CCCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhc
Q 010988 83 GSENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLH 162 (496)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 162 (496)
+.+..-.... .-.......+.-...+....+. .+||++|+|.+-++. .-+.+ | ..-++.
T Consensus 73 ~~~G~~~~~d--~~~~l~e~~~~Rs~lil~t~~~--fkPDi~IVd~~P~Gl--r~EL~--p-------------tL~yl~ 131 (400)
T COG4671 73 GDNGEYGLVD--LDGDLEETKKLRSQLILSTAET--FKPDIFIVDKFPFGL--RFELL--P-------------TLEYLK 131 (400)
T ss_pred cCCCceeeee--cCCCHHHHHHHHHHHHHHHHHh--cCCCEEEEeccccch--hhhhh--H-------------HHHHHh
Confidence 2111111000 0011222222223345566666 699999999554431 11100 0 000110
Q ss_pred ccccccccCCCCCccccCCCCCCcCCccc---ccc---CCCCChHHHHHHHHhhccccceEEEcChhhhhH--HHHHHHH
Q 010988 163 TSKVHENVTSKSDYFVVPGLPDQIEMTKV---QVP---LMRENSKDFGELVLAADMKSYGIIINTFEELES--EYVKEYK 234 (496)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~l~~~~~l~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~--~~~~~~~ 234 (496)
... ++..+..+ +.+ ...+.-....+.+.+++ +.+++-..+.+.. +.++...
T Consensus 132 ~~~------------------t~~vL~lr~i~D~p~~~~~~w~~~~~~~~I~r~y---D~V~v~GdP~f~d~~~~~~~~~ 190 (400)
T COG4671 132 TTG------------------TRLVLGLRSIRDIPQELEADWRRAETVRLINRFY---DLVLVYGDPDFYDPLTEFPFAP 190 (400)
T ss_pred hcC------------------CcceeehHhhhhchhhhccchhhhHHHHHHHHhh---eEEEEecCccccChhhcCCccH
Confidence 000 00001111 111 01111122222222222 2333333222220 1111121
Q ss_pred hhcCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHh-CCCCe
Q 010988 235 KTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA-SKKPF 313 (496)
Q Consensus 235 ~~~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~-~~~~~ 313 (496)
. .-.++.|+|-+ .++.+... .+ +... +.+.-|+||-|.-. ...+++...++|-.. .+.+-
T Consensus 191 ~-i~~k~~ytG~v-q~~~~~~~----------~p-----~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~ 251 (400)
T COG4671 191 A-IRAKMRYTGFV-QRSLPHLP----------LP-----PHEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNH 251 (400)
T ss_pred h-hhhheeEeEEe-eccCcCCC----------CC-----CcCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCc
Confidence 2 22789999988 32211100 00 1111 34447889888754 357777777776655 46664
Q ss_pred EEEEeCCCCCchhhhhhhhhHHHHHHh-----CCCcEEEeCcchh-hhhhccccccccccCCChhhHHHHHHhCCcEecc
Q 010988 314 IWVIRGGNNTSKEIQEWLLEEKFEERV-----KGRGILILGWAPQ-VLILSHPSIGGFLTHCGWNSSLEAISAGVPMITW 387 (496)
Q Consensus 314 i~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~nv~v~~~~pq-~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 387 (496)
.|.+-.+.+ .|+..+... +.+++.|..|-.+ ..++..++. +|+-||+||+||-|.+|+|.+++
T Consensus 252 ~~~ivtGP~---------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLiv 320 (400)
T COG4671 252 KWLIVTGPF---------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIV 320 (400)
T ss_pred ceEEEeCCC---------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEe
Confidence 454333321 454322222 3589999999875 568877777 99999999999999999999999
Q ss_pred CCc---cccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCC
Q 010988 388 PLF---GDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEG 444 (496)
Q Consensus 388 P~~---~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~ 444 (496)
|.. .+|-.-|.|+ +++|+.-.+..+ .+++..|.++|...++-+
T Consensus 321 Pr~~p~eEQliRA~Rl-~~LGL~dvL~pe-------------~lt~~~La~al~~~l~~P 366 (400)
T COG4671 321 PRAAPREEQLIRAQRL-EELGLVDVLLPE-------------NLTPQNLADALKAALARP 366 (400)
T ss_pred ccCCCcHHHHHHHHHH-HhcCcceeeCcc-------------cCChHHHHHHHHhcccCC
Confidence 985 4899999999 699999999887 699999999999999844
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.70 E-value=7.5e-15 Score=147.85 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=102.8
Q ss_pred CCeEEEEeeCCccCCChhhHHHHHHHHHh-CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHh--CCCcEEEeCcchh-hh
Q 010988 280 PNSVVYVCLGSICNLTSSQMIELGLGLEA-SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERV--KGRGILILGWAPQ-VL 355 (496)
Q Consensus 280 ~~~vI~vs~GS~~~~~~~~~~~~~~a~~~-~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~v~~~~pq-~~ 355 (496)
++++|++..|+.... ..+..+++++.. .+.++++..+.+. . +-+.+.... .++||.+.+|+++ .+
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~-~--------~~~~l~~~~~~~~~~v~~~g~~~~~~~ 269 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE-A--------LKQSLEDLQETNPDALKVFGYVENIDE 269 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH-H--------HHHHHHHHHhcCCCcEEEEechhhHHH
Confidence 456788877887542 234567777765 3567666655432 0 111222211 1358999999986 47
Q ss_pred hhccccccccccCCChhhHHHHHHhCCcEecc-CCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHH
Q 010988 356 ILSHPSIGGFLTHCGWNSSLEAISAGVPMITW-PLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVV 434 (496)
Q Consensus 356 ~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~ 434 (496)
++..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+.. .+.++|.
T Consensus 270 l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~-----------------~~~~~l~ 329 (380)
T PRK13609 270 LFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI-----------------RDDEEVF 329 (380)
T ss_pred HHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE-----------------CCHHHHH
Confidence 8988888 99999988999999999999985 6777788899999 588888653 2568899
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 010988 435 KAINMLMNEGGERENRRKRARE 456 (496)
Q Consensus 435 ~~i~~lL~~~~~~~~~~~~a~~ 456 (496)
++|.++++|++..+.+++++++
T Consensus 330 ~~i~~ll~~~~~~~~m~~~~~~ 351 (380)
T PRK13609 330 AKTEALLQDDMKLLQMKEAMKS 351 (380)
T ss_pred HHHHHHHCCHHHHHHHHHHHHH
Confidence 9999999987555555554444
No 38
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=8.4e-15 Score=147.61 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=104.1
Q ss_pred CCeEEEEeeCCccCCChhhHHHHHHHHH-h-CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHh-CCCcEEEeCcchh-hh
Q 010988 280 PNSVVYVCLGSICNLTSSQMIELGLGLE-A-SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERV-KGRGILILGWAPQ-VL 355 (496)
Q Consensus 280 ~~~vI~vs~GS~~~~~~~~~~~~~~a~~-~-~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq-~~ 355 (496)
++++|++..|+... ...+..+++++. . .+.++++..+.+. . +-+.+.... ..+++.+.+|+++ .+
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~----~-----l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK----E-----LKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH----H-----HHHHHHHHhccCCCeEEEeccchHHH
Confidence 45688898898763 123455555543 2 3556666655432 1 111222221 2458999999965 46
Q ss_pred hhccccccccccCCChhhHHHHHHhCCcEecc-CCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHH
Q 010988 356 ILSHPSIGGFLTHCGWNSSLEAISAGVPMITW-PLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVV 434 (496)
Q Consensus 356 ~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~ 434 (496)
++..+++ +|+..|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+.. -+.+++.
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~-----------------~~~~~l~ 329 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA-----------------DTPEEAI 329 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe-----------------CCHHHHH
Confidence 8888888 99998888999999999999998 7777777899999 699999764 2677899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 010988 435 KAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 435 ~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
++|.++++|++..+.|+++++++.
T Consensus 330 ~~i~~ll~~~~~~~~m~~~~~~~~ 353 (391)
T PRK13608 330 KIVASLTNGNEQLTNMISTMEQDK 353 (391)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999999998755555665555543
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.66 E-value=3.2e-14 Score=143.34 Aligned_cols=353 Identities=15% Similarity=0.111 Sum_probs=179.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
+|||+|+..++.||+.|.. ++++|.++++++.+++.... .+++.. . ...+.++.++ -
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~----~-~~~~~~~~l~---------~------ 57 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG----C-ESLFDMEELA---------V------ 57 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC----C-ccccCHHHhh---------h------
Confidence 4699999999999999999 99999999888888875431 122210 0 0011111111 0
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEE-cCCCcch--HHHHHhcCCCeEEEecchHHHHHHHhhhcccc
Q 010988 89 MLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVS-DMCYPWT--VDTAARFNIPRISFHGFSCFCLLCLYNLHTSK 165 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~-D~~~~~a--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (496)
.+..+....+.. .-.....+.+++++ .+||+|++ ++...+. +..|+..|||++.+.... .
T Consensus 58 -~g~~~~~~~~~~-~~~~~~~~~~~l~~--~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~--~----------- 120 (380)
T PRK00025 58 -MGLVEVLPRLPR-LLKIRRRLKRRLLA--EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS--V----------- 120 (380)
T ss_pred -ccHHHHHHHHHH-HHHHHHHHHHHHHH--cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc--h-----------
Confidence 000011111111 11234567788888 79999876 3322333 344677899988632110 0
Q ss_pred cccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCCceEEeC
Q 010988 166 VHENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWCLG 245 (496)
Q Consensus 166 ~~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~VG 245 (496)
..+.++ ...++ ...++.++..+-.. .+ .+.. .+.++.++|
T Consensus 121 ----------~~~~~~---------------------~~~~~---~~~~d~i~~~~~~~--~~---~~~~-~g~~~~~~G 160 (380)
T PRK00025 121 ----------WAWRQG---------------------RAFKI---AKATDHVLALFPFE--AA---FYDK-LGVPVTFVG 160 (380)
T ss_pred ----------hhcCch---------------------HHHHH---HHHHhhheeCCccC--HH---HHHh-cCCCeEEEC
Confidence 000000 01111 11223334333211 11 1222 223478888
Q ss_pred -cCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHh-----CCCCeEEEEeC
Q 010988 246 -PVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA-----SKKPFIWVIRG 319 (496)
Q Consensus 246 -pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~-----~~~~~i~~~~~ 319 (496)
|+........ ......+.+.-.+++++|++..||...........++++++. .+.+++++.+.
T Consensus 161 ~p~~~~~~~~~-----------~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~ 229 (380)
T PRK00025 161 HPLADAIPLLP-----------DRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVN 229 (380)
T ss_pred cCHHHhccccc-----------ChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 3321110000 012222223222234577777777644211223445555443 24566666543
Q ss_pred CCCCchhhhhhhhhHHHHHHhC---CCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCcc-----
Q 010988 320 GNNTSKEIQEWLLEEKFEERVK---GRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFG----- 391 (496)
Q Consensus 320 ~~~~~~~~~~~~lp~~~~~~~~---~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~----- 391 (496)
+. .. +.+..... .-++.+.+ -....++..+++ +|+.+|.+++ |++++|+|+|++|-..
T Consensus 230 ~~-~~---------~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~ 295 (380)
T PRK00025 230 PK-RR---------EQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFW 295 (380)
T ss_pred hh-hH---------HHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHH
Confidence 33 11 11211111 12344322 123567778887 9999999888 9999999999985431
Q ss_pred ---ccchh-----HHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 010988 392 ---DQFCN-----EKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKR 463 (496)
Q Consensus 392 ---DQ~~n-----a~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~ 463 (496)
.|..| +..+ ...+++..+... ..++++|.++|.++|+|++.++.++++++++...+
T Consensus 296 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-- 359 (380)
T PRK00025 296 IAKRLVKVPYVSLPNLL-AGRELVPELLQE-------------EATPEKLARALLPLLADGARRQALLEGFTELHQQL-- 359 (380)
T ss_pred HHHHHHcCCeeehHHHh-cCCCcchhhcCC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--
Confidence 12111 1222 122223223333 47899999999999999866666666666655543
Q ss_pred HhhhCCChHHHHHHHHHHHhcCC
Q 010988 464 ATEETGSSSLMIKLLIQDIMHQP 486 (496)
Q Consensus 464 a~~~~g~~~~~~~~~~~~~~~~~ 486 (496)
..| +...+.++|.++...+
T Consensus 360 ---~~~-a~~~~~~~i~~~~~~~ 378 (380)
T PRK00025 360 ---RCG-ADERAAQAVLELLKQR 378 (380)
T ss_pred ---CCC-HHHHHHHHHHHHhhhc
Confidence 234 3455556666665544
No 40
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.65 E-value=6.2e-15 Score=141.02 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=77.9
Q ss_pred eEEEEeeCCccCCChhhHHHHHHHHHhC--CCCeEEEEeCCCCCchhhhhhhhhHHHHHHh-CCCcEEEeCcchhh-hhh
Q 010988 282 SVVYVCLGSICNLTSSQMIELGLGLEAS--KKPFIWVIRGGNNTSKEIQEWLLEEKFEERV-KGRGILILGWAPQV-LIL 357 (496)
Q Consensus 282 ~vI~vs~GS~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq~-~~l 357 (496)
+.|+|++|...... ....+++++... +.++.+++|... . ..+.+.... ...|+.+..|+++. .+|
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~-~--------~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSN-P--------NLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCC-c--------CHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 57899999765422 445667777663 557777777654 1 111222211 24689999999975 799
Q ss_pred ccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHH
Q 010988 358 SHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKL 399 (496)
Q Consensus 358 ~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 399 (496)
..+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99998 999999 9999999999999999999999999875
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.52 E-value=4.4e-12 Score=127.63 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=96.1
Q ss_pred CCCeEEEEeeCCccCCChhhHHHHHHHHHh---------CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeC
Q 010988 279 PPNSVVYVCLGSICNLTSSQMIELGLGLEA---------SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILG 349 (496)
Q Consensus 279 ~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~---------~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~ 349 (496)
+++++|++..|+..... +..+++++.. .+.++++..|.+. . +-+.+.......+|.+.+
T Consensus 204 ~~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~----~-----~~~~L~~~~~~~~v~~~G 271 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRNK----K-----LQSKLESRDWKIPVKVRG 271 (382)
T ss_pred CCCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCCH----H-----HHHHHHhhcccCCeEEEe
Confidence 45568877777665433 2233333322 3355566665442 1 112222221235788899
Q ss_pred cchh-hhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccc-hhHHHHHHHhhceEEecccCCCCCCcccccccc
Q 010988 350 WAPQ-VLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQF-CNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVL 427 (496)
Q Consensus 350 ~~pq-~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~-~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~ 427 (496)
|+++ .+++..+++ +|+.+|-+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|+..
T Consensus 272 ~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~----------------- 331 (382)
T PLN02605 272 FVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFS----------------- 331 (382)
T ss_pred ccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeec-----------------
Confidence 9985 558888888 999999999999999999999998777776 689888 488998754
Q ss_pred cCHHHHHHHHHHHhcC-ChhHHHHHHHH
Q 010988 428 VKKEDVVKAINMLMNE-GGERENRRKRA 454 (496)
Q Consensus 428 ~~~~~l~~~i~~lL~~-~~~~~~~~~~a 454 (496)
-+++.|.++|.++++| ++..+.|++++
T Consensus 332 ~~~~~la~~i~~ll~~~~~~~~~m~~~~ 359 (382)
T PLN02605 332 ESPKEIARIVAEWFGDKSDELEAMSENA 359 (382)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2678899999999987 43333333333
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.52 E-value=8.7e-12 Score=125.23 Aligned_cols=334 Identities=16% Similarity=0.105 Sum_probs=176.7
Q ss_pred CCccCHHHHHHHHHHHHh--CCCeEE---EEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCC-CCCcccCCC
Q 010988 18 LAQGHMIPMIDIGRLLAQ--NGAAIT---IVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPE-GSENFDMLH 91 (496)
Q Consensus 18 ~~~GHi~p~l~LA~~L~~--rGH~Vt---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~-~~~~~~~~~ 91 (496)
.+.|-=.-.++||++|.+ .|++|. +++.....+ .. .+.... |+ ..++. ++....
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~---------~ip~~g-~~----~~~~sgg~~~~~--- 64 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NL---------GIPIIG-PT----KELPSGGFSYQS--- 64 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hC---------CCceeC-CC----CCCCCCCccCCC---
Confidence 455666678899999998 599999 988874322 11 122211 11 11222 221111
Q ss_pred chhhHHHHHH-HHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHHHHHHhhhccccccccc
Q 010988 92 STDLLFNFFK-SLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVHENV 170 (496)
Q Consensus 92 ~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (496)
....+..... ......+ -..++++...+||+||+-.-+. ...+|...|+|++++.+.-...+. .... ..
T Consensus 65 ~~~~~~~~~~gl~~~~~~-~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~------~~~~--~~ 134 (396)
T TIGR03492 65 LRGLLRDLRAGLVGLTLG-QWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYW------ESGP--RR 134 (396)
T ss_pred HHHHHHHHHhhHHHHHHH-HHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceee------cCCC--CC
Confidence 1122222222 2122222 2233444123899999775455 888999999999986544322210 0000 00
Q ss_pred CCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCCceEEeC-cCcC
Q 010988 171 TSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWCLG-PVSL 249 (496)
Q Consensus 171 ~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~VG-pl~~ 249 (496)
+........||... ..+ ++..-....+..++...-. . .+.+.+ .+-++.++| |+..
T Consensus 135 ~~~~~~~~~~G~~~----------------~p~-e~n~l~~~~a~~v~~~~~~--t---~~~l~~-~g~k~~~vGnPv~d 191 (396)
T TIGR03492 135 SPSDEYHRLEGSLY----------------LPW-ERWLMRSRRCLAVFVRDRL--T---ARDLRR-QGVRASYLGNPMMD 191 (396)
T ss_pred ccchhhhccCCCcc----------------CHH-HHHHhhchhhCEEeCCCHH--H---HHHHHH-CCCeEEEeCcCHHh
Confidence 00000001122211 111 2112122344555554411 2 223333 235899999 6533
Q ss_pred CCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhC----CCCeEEEEeCCCCCch
Q 010988 250 CNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS----KKPFIWVIRGGNNTSK 325 (496)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~ 325 (496)
..... .. .-+ .+++++|.+-.||....-...+..++++++.+ +.+|++.+.+.. +..
T Consensus 192 ~l~~~-------------~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~-~~~ 252 (396)
T TIGR03492 192 GLEPP-------------ER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL-SLE 252 (396)
T ss_pred cCccc-------------cc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC-CHH
Confidence 21100 00 012 22345899999998653333344566666553 667888774544 222
Q ss_pred hhhhhhhhH-HHHH---------HhCCCcEEEeCcch-hhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccc
Q 010988 326 EIQEWLLEE-KFEE---------RVKGRGILILGWAP-QVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQF 394 (496)
Q Consensus 326 ~~~~~~lp~-~~~~---------~~~~~nv~v~~~~p-q~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~ 394 (496)
.+.+. +.+ ++.. .....++.+..+.. ..+++..+++ +|+-.|..| .|+.+.|+|+|++|.-..|.
T Consensus 253 ~~~~~-l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~ 328 (396)
T TIGR03492 253 KLQAI-LEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF 328 (396)
T ss_pred HHHHH-HHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH
Confidence 22210 100 0000 00012355545543 4668888888 999999777 99999999999999877776
Q ss_pred hhHHHHHHHh----hceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCC
Q 010988 395 CNEKLIVQVL----NIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEG 444 (496)
Q Consensus 395 ~na~r~~e~~----G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~ 444 (496)
|+... ++. |.++.+.. .+.+.|.+++.++|+|+
T Consensus 329 -na~~~-~~~~~l~g~~~~l~~---------------~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 329 -TYGFA-EAQSRLLGGSVFLAS---------------KNPEQAAQVVRQLLADP 365 (396)
T ss_pred -HHHHH-HhhHhhcCCEEecCC---------------CCHHHHHHHHHHHHcCH
Confidence 98777 453 76766643 34599999999999976
No 43
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.51 E-value=4e-16 Score=137.97 Aligned_cols=138 Identities=20% Similarity=0.255 Sum_probs=97.9
Q ss_pred EEEEeeCCccCCC-hhhHHHHHHHHHh--CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcch-hhhhhc
Q 010988 283 VVYVCLGSICNLT-SSQMIELGLGLEA--SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAP-QVLILS 358 (496)
Q Consensus 283 vI~vs~GS~~~~~-~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p-q~~~l~ 358 (496)
+|+|+.||..... .+.+..++..+.. .+.++++++|... .. + ....+. ....|+.+.+|.+ ..+++.
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~-~~----~--~~~~~~--~~~~~v~~~~~~~~m~~~m~ 71 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN-YE----E--LKIKVE--NFNPNVKVFGFVDNMAELMA 71 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE-CH----H--HCCCHC--CTTCCCEEECSSSSHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc-HH----H--HHHHHh--ccCCcEEEEechhhHHHHHH
Confidence 5899999886411 1112223333332 2578888887764 11 1 111110 0126899999999 788999
Q ss_pred cccccccccCCChhhHHHHHHhCCcEeccCCcc----ccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHH
Q 010988 359 HPSIGGFLTHCGWNSSLEAISAGVPMITWPLFG----DQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVV 434 (496)
Q Consensus 359 ~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~----DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~ 434 (496)
.+++ +|||||.||++|++++|+|+|++|... +|..||..+ ++.|+|..+... ..+.+.|.
T Consensus 72 ~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~~-------------~~~~~~L~ 135 (167)
T PF04101_consen 72 AADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDES-------------ELNPEELA 135 (167)
T ss_dssp HHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSECC-------------C-SCCCHH
T ss_pred HcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCcc-------------cCCHHHHH
Confidence 9998 999999999999999999999999988 999999999 599999999876 57799999
Q ss_pred HHHHHHhcCCh
Q 010988 435 KAINMLMNEGG 445 (496)
Q Consensus 435 ~~i~~lL~~~~ 445 (496)
++|.+++.++.
T Consensus 136 ~~i~~l~~~~~ 146 (167)
T PF04101_consen 136 EAIEELLSDPE 146 (167)
T ss_dssp HHHHCHCCCHH
T ss_pred HHHHHHHcCcH
Confidence 99999998763
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.37 E-value=4.3e-10 Score=116.30 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=92.5
Q ss_pred EEEEeeCCccCCChhhHHHHHHHHHhC-CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhh---hhc
Q 010988 283 VVYVCLGSICNLTSSQMIELGLGLEAS-KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVL---ILS 358 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~---~l~ 358 (496)
.+++..|+... ...+..++++++.. +.+++ .+|.+. ..+.+.......+|...+|+|+.+ ++.
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G~----------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~ 330 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDGP----------YREELEKMFAGTPTVFTGMLQGDELSQAYA 330 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCCh----------HHHHHHHHhccCCeEEeccCCHHHHHHHHH
Confidence 45566687643 33355677777775 55544 444443 112333333456899999998544 677
Q ss_pred cccccccccCC---C-hhhHHHHHHhCCcEeccCCccccchhHHHHHHH---hhceEEecccCCCCCCcccccccccCHH
Q 010988 359 HPSIGGFLTHC---G-WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQV---LNIGVRIGVEVPLDFGEEEEIGVLVKKE 431 (496)
Q Consensus 359 ~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~---~G~g~~l~~~~~~~~~~~~~~~~~~~~~ 431 (496)
.+++ +|.-. | -.++.||+++|+|+|+.... .....+ ++ -+.|..++.. +.+
T Consensus 331 ~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~~---------------d~~ 388 (465)
T PLN02871 331 SGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTPG---------------DVD 388 (465)
T ss_pred HCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCCC---------------CHH
Confidence 7777 77433 2 34788999999999986543 233344 44 5678777554 678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 432 DVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 432 ~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
++.++|.++++|++..+.+.+++++..
T Consensus 389 ~la~~i~~ll~~~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 389 DCVEKLETLLADPELRERMGAAAREEV 415 (465)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999998866667777776644
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.28 E-value=8.4e-09 Score=102.49 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=72.2
Q ss_pred CCcEEEeCcchhhh---hhccccccccccCCC----hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccC
Q 010988 342 GRGILILGWAPQVL---ILSHPSIGGFLTHCG----WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEV 414 (496)
Q Consensus 342 ~~nv~v~~~~pq~~---~l~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~ 414 (496)
..||.+.+|+++.+ ++..+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+ +..+.|...+.
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i-~~~~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIV-TDGENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhhh-cCCcceEEcCC--
Confidence 67899999998655 7878877 886654 36899999999999987754 355566 57788877755
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 415 PLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
-+.+++.++|.++++|++..+.+.+++++..
T Consensus 317 -------------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 317 -------------GDAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred -------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 3678899999999998866555665555544
No 46
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.28 E-value=4.2e-12 Score=108.54 Aligned_cols=128 Identities=18% Similarity=0.275 Sum_probs=80.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCCC
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLH 91 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 91 (496)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. ++.++.++.. ..++.. .....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~---~~~~~~---~~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGD---SRLPRS---LEPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSC---GGGGHH---HHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCC---cCcCcc---cchhh
Confidence 78999999999999999999999999999999999888877553 7999888622 000000 00000
Q ss_pred chhhHHHHHHHHHhhhHHHHHHHHhc------CCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchHHH
Q 010988 92 STDLLFNFFKSLTLLQLPLENLLKEL------APKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSCFC 154 (496)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~ll~~~------~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~ 154 (496)
................+.+.+...+. ....|+++++.....+..+|+.+|||++.....+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 00001111111122222222222221 1468888889878889999999999999976665543
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.28 E-value=1.4e-08 Score=100.58 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=87.6
Q ss_pred CeEEEEeeCCccCCChhhHHHHHHHHHhC---CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhh--
Q 010988 281 NSVVYVCLGSICNLTSSQMIELGLGLEAS---KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVL-- 355 (496)
Q Consensus 281 ~~vI~vs~GS~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~-- 355 (496)
++.+++..|+... ......+++++... +.++++. |... .. ...........++.+.+|+++.+
T Consensus 190 ~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~-G~~~-~~--------~~~~~~~~~~~~v~~~g~~~~~~~~ 257 (359)
T cd03823 190 GRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIV-GNGL-EL--------EEESYELEGDPRVEFLGAYPQEEID 257 (359)
T ss_pred CceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEE-cCch-hh--------hHHHHhhcCCCeEEEeCCCCHHHHH
Confidence 3466777787654 12233444554442 4555443 4333 11 00000001357899999997554
Q ss_pred -hhcccccccccc----CCCh-hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccC
Q 010988 356 -ILSHPSIGGFLT----HCGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVK 429 (496)
Q Consensus 356 -~l~~~~~~~~I~----HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~ 429 (496)
++..+++ +|+ ..|. .++.||+++|+|+|+.+. ..+...+ +..+.|...+.. +
T Consensus 258 ~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~~---------------d 315 (359)
T cd03823 258 DFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPPG---------------D 315 (359)
T ss_pred HHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECCC---------------C
Confidence 5778877 663 2344 378999999999998654 4456666 465578777553 6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010988 430 KEDVVKAINMLMNEGGERENRRKRARE 456 (496)
Q Consensus 430 ~~~l~~~i~~lL~~~~~~~~~~~~a~~ 456 (496)
.+++.++|.++++|+...+.+.+++++
T Consensus 316 ~~~l~~~i~~l~~~~~~~~~~~~~~~~ 342 (359)
T cd03823 316 AEDLAAALERLIDDPDLLERLRAGIEP 342 (359)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHhHHH
Confidence 899999999999987555555555443
No 48
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.22 E-value=3.3e-08 Score=98.31 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCcEEEeCcchhhh---hhccccccccccC----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccC
Q 010988 342 GRGILILGWAPQVL---ILSHPSIGGFLTH----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEV 414 (496)
Q Consensus 342 ~~nv~v~~~~pq~~---~l~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~ 414 (496)
.+|+.+.+++|+.+ ++..+++ +|.- |...++.||+++|+|+|+... ...+..+ +..+.|..++..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCCC-
Confidence 57899999998754 6777777 6633 334689999999999998653 4455666 466778877654
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 010988 415 PLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMA 461 (496)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~ 461 (496)
+. ++.++|.++++|+...+.+.+++++.....
T Consensus 330 --------------~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 330 --------------DE-ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred --------------CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 22 899999999998865556666666665553
No 49
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.19 E-value=5.5e-08 Score=97.42 Aligned_cols=332 Identities=14% Similarity=0.094 Sum_probs=170.1
Q ss_pred CEEEEEcCCC-ccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 10 PHFVLFPFLA-QGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 10 ~~il~~~~~~-~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
|||++++.|. .|.-.-...+++.|.++||+|++++........ . ...++.++.++... .+. ..
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~-~-------~~~~~~~~~~~~~~----~~~----~~ 64 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRLD-E-------YSPNIFFHEVEVPQ----YPL----FQ 64 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcchh-h-------hccCeEEEEecccc----cch----hh
Confidence 5888888765 777778999999999999999999875321110 0 01234444333111 000 00
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc--chHHHHHh-c---CCCeEEEecchHHHHHHHhhhc
Q 010988 89 MLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP--WTVDTAAR-F---NIPRISFHGFSCFCLLCLYNLH 162 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~--~a~~~A~~-l---giP~v~~~~~~~~~~~~~~~~~ 162 (496)
.. . + .......+.++++. .+||+|.+..... ....++.. . ++|++.........
T Consensus 65 -~~--~-~------~~~~~~~l~~~i~~--~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-------- 124 (371)
T cd04962 65 -YP--P-Y------DLALASKIAEVAKR--YKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDIT-------- 124 (371)
T ss_pred -cc--h-h------HHHHHHHHHHHHhc--CCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccc--------
Confidence 00 0 0 01123456677777 7999998763322 22233322 2 78988632211000
Q ss_pred ccccccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhh--cCCc
Q 010988 163 TSKVHENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKT--KGGK 240 (496)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~--~~~~ 240 (496)
..+... .+... .......++.++..+-...+ ..... ...+
T Consensus 125 ----------------~~~~~~--------------~~~~~---~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~ 166 (371)
T cd04962 125 ----------------LVGQDP--------------SFQPA---TRFSIEKSDGVTAVSESLRQ-----ETYELFDITKE 166 (371)
T ss_pred ----------------cccccc--------------cchHH---HHHHHhhCCEEEEcCHHHHH-----HHHHhcCCcCC
Confidence 000000 00011 11123455666665533221 12221 2245
Q ss_pred eEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHh----CCCCeEEE
Q 010988 241 VWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA----SKKPFIWV 316 (496)
Q Consensus 241 v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~----~~~~~i~~ 316 (496)
+..|+........... ......+.+... ++..+++..|.... ...+..+++++.. .+.++++.
T Consensus 167 i~vi~n~~~~~~~~~~----------~~~~~~~~~~~~-~~~~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~ 233 (371)
T cd04962 167 IEVIPNFVDEDRFRPK----------PDEALKRRLGAP-EGEKVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLV 233 (371)
T ss_pred EEEecCCcCHhhcCCC----------chHHHHHhcCCC-CCCeEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEE
Confidence 6666532211000000 011111122111 23356677777654 2233444444432 35555554
Q ss_pred EeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchh-hhhhcccccccccc----CCChhhHHHHHHhCCcEeccCCcc
Q 010988 317 IRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQ-VLILSHPSIGGFLT----HCGWNSSLEAISAGVPMITWPLFG 391 (496)
Q Consensus 317 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq-~~~l~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~ 391 (496)
+.+. ..+...+ .....-..++|...++.++ ..++..+++ +|. -|.-.++.||+++|+|+|+...
T Consensus 234 -G~g~-~~~~~~~-----~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~-- 302 (371)
T cd04962 234 -GDGP-ERSPAER-----LARELGLQDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA-- 302 (371)
T ss_pred -cCCc-CHHHHHH-----HHHHcCCCceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC--
Confidence 3333 2212111 1111112457888888764 457878877 662 2334599999999999998543
Q ss_pred ccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010988 392 DQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREF 457 (496)
Q Consensus 392 DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l 457 (496)
......+ ++-..|...+. -+.+++.++|.++++|+...+.+++++++.
T Consensus 303 --~~~~e~i-~~~~~G~~~~~---------------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 303 --GGIPEVV-KHGETGFLVDV---------------GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred --CCchhhh-cCCCceEEcCC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3455555 35456765544 378899999999999876666667776665
No 50
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.19 E-value=7.5e-08 Score=97.58 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=68.2
Q ss_pred CCcEEEeCcchhhh---hhccccccccc--c-CCCh-hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccC
Q 010988 342 GRGILILGWAPQVL---ILSHPSIGGFL--T-HCGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEV 414 (496)
Q Consensus 342 ~~nv~v~~~~pq~~---~l~~~~~~~~I--~-HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~ 414 (496)
.++|.+.+++|+.+ ++..+++ +| + +.|. .++.||+++|+|+|+.. .......+ +.-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEcCC--
Confidence 57899999999765 5667777 55 3 2333 48899999999999854 34455556 35456766654
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 010988 415 PLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQM 459 (496)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~ 459 (496)
.+++++.++|.++++|++..+.+.+++++...
T Consensus 351 -------------~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~ 382 (396)
T cd03818 351 -------------FDPDALAAAVIELLDDPARRARLRRAARRTAL 382 (396)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 47899999999999987655666666655443
No 51
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.18 E-value=2.4e-08 Score=100.95 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=70.0
Q ss_pred CCcEEEeCcchhhh---hhccccccccccC----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccC
Q 010988 342 GRGILILGWAPQVL---ILSHPSIGGFLTH----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEV 414 (496)
Q Consensus 342 ~~nv~v~~~~pq~~---~l~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~ 414 (496)
..|+.+.+|+|+.+ ++..+++ +++. |--.++.||+++|+|+|+-... .....+ ++.+.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeCC--
Confidence 46899999999765 4777777 7743 2235899999999999976543 355566 57678887755
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 415 PLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
-+.+++.++|.++++|+...+.+.+++++..
T Consensus 353 -------------~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 383 (398)
T cd03800 353 -------------RDPEALAAALRRLLTDPALRRRLSRAGLRRA 383 (398)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3789999999999998765556666665543
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.17 E-value=4.1e-08 Score=98.09 Aligned_cols=149 Identities=18% Similarity=0.239 Sum_probs=90.7
Q ss_pred CeEEEEeeCCccC-CChhhHHHHHHHHHhC-CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhh---
Q 010988 281 NSVVYVCLGSICN-LTSSQMIELGLGLEAS-KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVL--- 355 (496)
Q Consensus 281 ~~vI~vs~GS~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~--- 355 (496)
++.+++..|+... ...+.+..++..+... +.++++ ++.+. ..+...+ .......+|+.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~-~~~~~~~------~~~~~~~~~v~~~g~~~~~~~~~ 290 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGP-EKEELKE------LAKALGLDNVTFLGRVPKEELPE 290 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCcc-cHHHHHH------HHHHcCCCcEEEeCCCChHHHHH
Confidence 3467777887654 2233333333333332 445443 44443 2111111 11123467899999998654
Q ss_pred hhccccccccccCCC---------hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCccccccc
Q 010988 356 ILSHPSIGGFLTHCG---------WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGV 426 (496)
Q Consensus 356 ~l~~~~~~~~I~HGG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~ 426 (496)
++..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+ ...+.|...+.
T Consensus 291 ~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~~~~-------------- 349 (394)
T cd03794 291 LLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLVVPP-------------- 349 (394)
T ss_pred HHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceEeCC--------------
Confidence 6777777 664322 234799999999999988765433 33 23366766654
Q ss_pred ccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 010988 427 LVKKEDVVKAINMLMNEGGERENRRKRAREFQM 459 (496)
Q Consensus 427 ~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~ 459 (496)
-+.+++.++|.++++|++..+.+++++++...
T Consensus 350 -~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 350 -GDPEALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred -CCHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 37899999999999988766777777666554
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.13 E-value=2.1e-07 Score=94.73 Aligned_cols=352 Identities=14% Similarity=0.043 Sum_probs=175.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcc
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 87 (496)
++.+|.+++....|+-..+..+|+.|+++||+|++++........+.. ...++.++.++... .....
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~------~~~~v~~~~~~~~~------~~~~~- 68 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL------SNPNITIHPLPPPP------QRLNK- 68 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh------cCCCEEEEECCCCc------ccccc-
Confidence 456788888877888888999999999999999999875322111101 23467777764211 00000
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcC-CCc----chHHHHHhcCCCeEEEecchHHHHHHHhhhc
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDM-CYP----WTVDTAARFNIPRISFHGFSCFCLLCLYNLH 162 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~-~~~----~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 162 (496)
..................+..+++. .+||+|++.. ..+ .+..+++..++|+|..+........ ..
T Consensus 69 ----~~~~~~~~~~~~~~~~~~~~~l~~~--~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~---~~- 138 (415)
T cd03816 69 ----LPFLLFAPLKVLWQFFSLLWLLYKL--RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTIL---AL- 138 (415)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHH---hc-
Confidence 0111222222222233334445555 6899999753 221 1333466689998874322111100 00
Q ss_pred ccccccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhh-ccccceEEEcChhhhhHHHHHHHHhhcCCce
Q 010988 163 TSKVHENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAA-DMKSYGIIINTFEELESEYVKEYKKTKGGKV 241 (496)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v 241 (496)
.... ...+..+...+... ...++.++..|...-+ .+... ...+.++
T Consensus 139 ------------------~~~~------------~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~--~l~~~-~~~~~ki 185 (415)
T cd03816 139 ------------------KLGE------------NHPLVRLAKWYEKLFGRLADYNLCVTKAMKE--DLQQF-NNWKIRA 185 (415)
T ss_pred ------------------ccCC------------CCHHHHHHHHHHHHHhhcCCEeeecCHHHHH--HHHhh-hccCCCe
Confidence 0000 00011122222222 2345666665543222 11111 1112344
Q ss_pred EEeCcCcCCCcCCchhhhhCCCCcCChhhhccc-------------c---CCCCCCeEEEEeeCCccCCChhhHHHHHHH
Q 010988 242 WCLGPVSLCNKQDIDKAERGKKAAIDVSECLNW-------------L---DSWPPNSVVYVCLGSICNLTSSQMIELGLG 305 (496)
Q Consensus 242 ~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------l---~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a 305 (496)
..|..-... .. .+.. .......+ . ...+++..++++.|.... ...+..+++|
T Consensus 186 ~vI~Ng~~~--~f-------~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li~A 253 (415)
T cd03816 186 TVLYDRPPE--QF-------RPLP-LEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILLDA 253 (415)
T ss_pred eecCCCCHH--Hc-------eeCc-HHHHHHHHHhccccccccccccccceecCCCceEEEEeccccC--CCCHHHHHHH
Confidence 444211000 00 0000 00000001 0 001233456666777643 2234455555
Q ss_pred HHhC-----------CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEe-Ccchhhh---hhcccccccccc-C-
Q 010988 306 LEAS-----------KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILIL-GWAPQVL---ILSHPSIGGFLT-H- 368 (496)
Q Consensus 306 ~~~~-----------~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~-~~~pq~~---~l~~~~~~~~I~-H- 368 (496)
++.. +.+ ++.+|.+. ..+...+ .....+-+|++.. +|+|..+ +|..+++ +|. +
T Consensus 254 ~~~l~~~~~~~~~~~~i~-l~ivG~G~-~~~~l~~------~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~ 323 (415)
T cd03816 254 LVAYEKSAATGPKLPKLL-CIITGKGP-LKEKYLE------RIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHT 323 (415)
T ss_pred HHHHHHhhcccccCCCEE-EEEEecCc-cHHHHHH------HHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccc
Confidence 5432 223 33445544 2222222 1122233566654 5887544 5777777 663 1
Q ss_pred ---C-C-hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcC
Q 010988 369 ---C-G-WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNE 443 (496)
Q Consensus 369 ---G-G-~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~ 443 (496)
| | -+.+.||+++|+|+|+... ......+ ++-+.|..+ . +.++|.++|.++++|
T Consensus 324 ~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv--~---------------d~~~la~~i~~ll~~ 381 (415)
T cd03816 324 SSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVF--G---------------DSEELAEQLIDLLSN 381 (415)
T ss_pred cccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE--C---------------CHHHHHHHHHHHHhc
Confidence 1 2 3369999999999998543 3455566 576778765 2 578999999999998
Q ss_pred ---ChhHHHHHHHHHHHHH
Q 010988 444 ---GGERENRRKRAREFQM 459 (496)
Q Consensus 444 ---~~~~~~~~~~a~~l~~ 459 (496)
+...+.|.+++++...
T Consensus 382 ~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 382 FPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 6666777777777653
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.12 E-value=6.2e-07 Score=88.52 Aligned_cols=332 Identities=18% Similarity=0.125 Sum_probs=173.4
Q ss_pred EEEEEcCC---C-ccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCc
Q 010988 11 HFVLFPFL---A-QGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSEN 86 (496)
Q Consensus 11 ~il~~~~~---~-~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~ 86 (496)
||++++.. . .|+...+..+++.|.+.||+|++++......... ...... .....
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~-------------~~~~~~--------~~~~~- 58 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDE-------------EEVGGI--------VVVRP- 58 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCce-------------eeecCc--------ceecC-
Confidence 45555532 2 6889999999999999999999999874332111 000000 00000
Q ss_pred ccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchH--HHHHhcCCCeEEEecchHHHHHHHhhhccc
Q 010988 87 FDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTV--DTAARFNIPRISFHGFSCFCLLCLYNLHTS 164 (496)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 164 (496)
. . ................+..+++. .+||+|++........ ..+...++|++...........
T Consensus 59 ~--~---~~~~~~~~~~~~~~~~~~~~~~~--~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------- 123 (374)
T cd03801 59 P--P---LLRVRRLLLLLLLALRLRRLLRR--ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP-------- 123 (374)
T ss_pred C--c---ccccchhHHHHHHHHHHHHHhhh--cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc--------
Confidence 0 0 00000011111223445566666 6999999886555433 4778899999874433221100
Q ss_pred ccccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcC---Cce
Q 010988 165 KVHENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKG---GKV 241 (496)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~---~~v 241 (496)
.. . .. .. ..............++.++..+....+ .+....+ .++
T Consensus 124 ----------~~--~---~~--------~~-----~~~~~~~~~~~~~~~d~~i~~s~~~~~-----~~~~~~~~~~~~~ 170 (374)
T cd03801 124 ----------GN--E---LG--------LL-----LKLARALERRALRRADRIIAVSEATRE-----ELRELGGVPPEKI 170 (374)
T ss_pred ----------cc--c---hh--------HH-----HHHHHHHHHHHHHhCCEEEEecHHHHH-----HHHhcCCCCCCcE
Confidence 00 0 00 00 001111122234556677776644332 3433333 256
Q ss_pred EEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhC-----CCCeEEE
Q 010988 242 WCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS-----KKPFIWV 316 (496)
Q Consensus 242 ~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~-----~~~~i~~ 316 (496)
..+.+-........ .......-... ..+..+++.+|+... ...+..+++++... +.+++ .
T Consensus 171 ~~i~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~-i 235 (374)
T cd03801 171 TVIPNGVDTERFRP-----------APRAARRRLGI-PEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLV-I 235 (374)
T ss_pred EEecCcccccccCc-----------cchHHHhhcCC-cCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEE-E
Confidence 66654322111000 00000011111 123356677777653 22344455555442 23333 3
Q ss_pred EeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhh---hhhcccccccccc----CCChhhHHHHHHhCCcEeccCC
Q 010988 317 IRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQV---LILSHPSIGGFLT----HCGWNSSLEAISAGVPMITWPL 389 (496)
Q Consensus 317 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~---~~l~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~ 389 (496)
.+.+. . ... +-..........+|.+.+++++. .++..+++ +|. -|.-+++.||+++|+|+|+.+.
T Consensus 236 ~G~~~-~---~~~--~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~ 307 (374)
T cd03801 236 VGDGP-L---REE--LEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV 307 (374)
T ss_pred EeCcH-H---HHH--HHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC
Confidence 34332 1 111 11111111246799999999754 46777777 663 3556789999999999998665
Q ss_pred ccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010988 390 FGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAR 455 (496)
Q Consensus 390 ~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~ 455 (496)
......+ +..+.|...+. .+.+++.++|.++++|++..+.+.++++
T Consensus 308 ----~~~~~~~-~~~~~g~~~~~---------------~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 308 ----GGIPEVV-EDGETGLLVPP---------------GDPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred ----CChhHHh-cCCcceEEeCC---------------CCHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 4456666 46677777654 3689999999999998855555555554
No 55
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.10 E-value=1.4e-07 Score=92.98 Aligned_cols=328 Identities=15% Similarity=0.124 Sum_probs=170.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDML 90 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 90 (496)
||++++....|+......++++|.++||+|++++......... ...+++++.++.... ..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~------~~------ 60 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEEL--------EALGVKVIPIPLDRR------GI------ 60 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccc--------ccCCceEEecccccc------cc------
Confidence 5778887778889999999999999999999998875443200 123566655542110 00
Q ss_pred CchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc--chHHHHHhcCCCeEEEecchHHHHHHHhhhccccccc
Q 010988 91 HSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP--WTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVHE 168 (496)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~--~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (496)
.....+. ....+.++++. .+||+|++..... .+..+++..+.|.+...........
T Consensus 61 ---~~~~~~~-----~~~~~~~~~~~--~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------ 118 (359)
T cd03808 61 ---NPFKDLK-----ALLRLYRLLRK--ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------ 118 (359)
T ss_pred ---ChHhHHH-----HHHHHHHHHHh--cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------
Confidence 0011110 11245566666 6999999875433 2334455466665553221111100
Q ss_pred ccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHh-hccccceEEEcChhhhhHHHHHHHHhhcC---CceEEe
Q 010988 169 NVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLA-ADMKSYGIIINTFEELESEYVKEYKKTKG---GKVWCL 244 (496)
Q Consensus 169 ~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~le~~~~~~~~~~~~---~~v~~V 244 (496)
.... ........... ....++.++..+....+ .+..... .....+
T Consensus 119 -------------~~~~-------------~~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~~~ 167 (359)
T cd03808 119 -------------TSGG-------------LKRRLYLLLERLALRFTDKVIFQNEDDRD-----LALKLGIIKKKKTVLI 167 (359)
T ss_pred -------------ccch-------------hHHHHHHHHHHHHHhhccEEEEcCHHHHH-----HHHHhcCCCcCceEEe
Confidence 0000 00111111111 22345666666643322 2222211 123333
Q ss_pred CcCcCCCcCCchhhhhCCCCcCChhhhccccCC-CCCCeEEEEeeCCccC-CChhhHHHHHHHHHh--CCCCeEEEEeCC
Q 010988 245 GPVSLCNKQDIDKAERGKKAAIDVSECLNWLDS-WPPNSVVYVCLGSICN-LTSSQMIELGLGLEA--SKKPFIWVIRGG 320 (496)
Q Consensus 245 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~vI~vs~GS~~~-~~~~~~~~~~~a~~~--~~~~~i~~~~~~ 320 (496)
.|........ . .... ..+++.+++..|+... ...+.+...+..+.+ .+.++++. +..
T Consensus 168 ~~~~~~~~~~-------------~-----~~~~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~-G~~ 228 (359)
T cd03808 168 PGSGVDLDRF-------------S-----PSPEPIPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLV-GDG 228 (359)
T ss_pred cCCCCChhhc-------------C-----ccccccCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEE-cCC
Confidence 3322211100 0 0000 1234477788887654 233334444444433 34444443 333
Q ss_pred CCCchhhhhhhhhHHHHHHhCCCcEEEeCcch-hhhhhccccccccccCCC----hhhHHHHHHhCCcEeccCCccccch
Q 010988 321 NNTSKEIQEWLLEEKFEERVKGRGILILGWAP-QVLILSHPSIGGFLTHCG----WNSSLEAISAGVPMITWPLFGDQFC 395 (496)
Q Consensus 321 ~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p-q~~~l~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~ 395 (496)
. ....... ..........+|...++.. ...++..+++ +|.-.. -+++.||+++|+|+|+-+.. .
T Consensus 229 ~-~~~~~~~----~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~ 297 (359)
T cd03808 229 D-EENPAAI----LEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----G 297 (359)
T ss_pred C-cchhhHH----HHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----C
Confidence 2 1111000 0011111256788888754 3458888887 665332 56899999999999986543 3
Q ss_pred hHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010988 396 NEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREF 457 (496)
Q Consensus 396 na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l 457 (496)
+...+ ++.+.|...+. -+.+++.++|.+++.|++..+.+.+++++.
T Consensus 298 ~~~~i-~~~~~g~~~~~---------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 298 CREAV-IDGVNGFLVPP---------------GDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred chhhh-hcCcceEEECC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 44555 45667776654 378999999999999886555566665555
No 56
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.08 E-value=1.8e-07 Score=95.73 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=74.1
Q ss_pred cEEEeCcch-hhhhhccccccccccC-----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCC
Q 010988 344 GILILGWAP-QVLILSHPSIGGFLTH-----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLD 417 (496)
Q Consensus 344 nv~v~~~~p-q~~~l~~~~~~~~I~H-----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~ 417 (496)
+|++.+... ...++..+++ ++.. ||..++.||+++|+|+|+-|...++......+ ++.|+++. .
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~--~----- 372 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQ--V----- 372 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEE--E-----
Confidence 344444433 2456667775 4331 33446999999999999999888888877777 46666544 3
Q ss_pred CCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhc
Q 010988 418 FGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIMH 484 (496)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 484 (496)
-++++|.++|.++++|++.++.|.+++++.... ...+.+.+.++++++++
T Consensus 373 ----------~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~-------~~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 373 ----------EDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQ-------NQGALQRTLQLLEPYLP 422 (425)
T ss_pred ----------CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-------CccHHHHHHHHHHHhcc
Confidence 367889999999999886666666666555433 22334455555555443
No 57
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.08 E-value=3.4e-08 Score=96.58 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=89.0
Q ss_pred eEEEEeeCCccCCChhhHHHHHHHHHhCCCC-eEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccc
Q 010988 282 SVVYVCLGSICNLTSSQMIELGLGLEASKKP-FIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHP 360 (496)
Q Consensus 282 ~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~ 360 (496)
++|.+-.||....-...+-.++++...+..+ .++.+.... +.+. +.+... ....+.+.+ .-.+++..+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~-~~~~-----i~~~~~---~~~~~~~~~--~~~~~m~~a 236 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF-KGKD-----LKEIYG---DISEFEISY--DTHKALLEA 236 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-cHHH-----HHHHHh---cCCCcEEec--cHHHHHHhh
Confidence 5899999998652234444455666554222 333333332 1111 111110 112333322 335688888
Q ss_pred cccccccCCChhhHHHHHHhCCcEeccCC--ccccchhHHHHHH---HhhceEEecc-----cCCCCCCcccccccccCH
Q 010988 361 SIGGFLTHCGWNSSLEAISAGVPMITWPL--FGDQFCNEKLIVQ---VLNIGVRIGV-----EVPLDFGEEEEIGVLVKK 430 (496)
Q Consensus 361 ~~~~~I~HGG~gs~~eal~~GvP~v~~P~--~~DQ~~na~r~~e---~~G~g~~l~~-----~~~~~~~~~~~~~~~~~~ 430 (496)
++ +|+-.|..|+ |+.++|+|||+ ++ ..-|+.||+++ . ..|++-.+-. .---++-+ ..+|+
T Consensus 237 Dl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEllQ-----~~~t~ 306 (347)
T PRK14089 237 EF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPELLQ-----EFVTV 306 (347)
T ss_pred hH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchhhc-----ccCCH
Confidence 88 9999999999 99999999988 54 34688899999 4 4444433311 00000111 15899
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 010988 431 EDVVKAINMLMNEGGERENRRKRAREFQMMA 461 (496)
Q Consensus 431 ~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~ 461 (496)
++|.+++.+. +++.+++...++++.+
T Consensus 307 ~~la~~i~~~-----~~~~~~~~~~~l~~~l 332 (347)
T PRK14089 307 ENLLKAYKEM-----DREKFFKKSKELREYL 332 (347)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 9999999772 2335666666666655
No 58
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.07 E-value=2.4e-08 Score=91.02 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=100.0
Q ss_pred CeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHh-CCCcEEEeCcch-hhhhhc
Q 010988 281 NSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERV-KGRGILILGWAP-QVLILS 358 (496)
Q Consensus 281 ~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~p-q~~~l~ 358 (496)
+.-|+|++|..-. ....-.++..+.+.++.+-++++... . . + ++++.+. ..+|+...-... ...++.
T Consensus 158 ~r~ilI~lGGsDp--k~lt~kvl~~L~~~~~nl~iV~gs~~-p--~-----l-~~l~k~~~~~~~i~~~~~~~dma~LMk 226 (318)
T COG3980 158 KRDILITLGGSDP--KNLTLKVLAELEQKNVNLHIVVGSSN-P--T-----L-KNLRKRAEKYPNINLYIDTNDMAELMK 226 (318)
T ss_pred hheEEEEccCCCh--hhhHHHHHHHhhccCeeEEEEecCCC-c--c-----h-hHHHHHHhhCCCeeeEecchhHHHHHH
Confidence 3368999987531 22455677777776666555665332 1 1 2 2233322 255666555554 566999
Q ss_pred cccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHH
Q 010988 359 HPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAIN 438 (496)
Q Consensus 359 ~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 438 (496)
.+++ .|+-||. |+.|++.-|+|.+++|+...|--.|... +.+|+-..+.. .++.......+.
T Consensus 227 e~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~--------------~l~~~~~~~~~~ 288 (318)
T COG3980 227 EADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGY--------------HLKDLAKDYEIL 288 (318)
T ss_pred hcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccC--------------CCchHHHHHHHH
Confidence 9998 9998885 8999999999999999999999999999 69888877754 367777778888
Q ss_pred HHhcCChhHHHHHHHHH
Q 010988 439 MLMNEGGERENRRKRAR 455 (496)
Q Consensus 439 ~lL~~~~~~~~~~~~a~ 455 (496)
++.+|. ..|++..
T Consensus 289 ~i~~d~----~~rk~l~ 301 (318)
T COG3980 289 QIQKDY----ARRKNLS 301 (318)
T ss_pred HhhhCH----HHhhhhh
Confidence 888876 5554443
No 59
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.07 E-value=1.3e-06 Score=89.04 Aligned_cols=147 Identities=18% Similarity=0.169 Sum_probs=90.7
Q ss_pred EEEEeeCCccCCChhhHHHHHHHHHhC----CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhh---h
Q 010988 283 VVYVCLGSICNLTSSQMIELGLGLEAS----KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQV---L 355 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~---~ 355 (496)
.+++..|+... ...+..+++|++.. +.+++ .+|.+. ..+. +- ........+||...+|+|+. .
T Consensus 230 ~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~-ivG~g~-~~~~-----l~-~~~~~~~l~~v~f~G~~~~~~~~~ 299 (412)
T PRK10307 230 KIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFV-ICGQGG-GKAR-----LE-KMAQCRGLPNVHFLPLQPYDRLPA 299 (412)
T ss_pred EEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEE-EECCCh-hHHH-----HH-HHHHHcCCCceEEeCCCCHHHHHH
Confidence 56666787753 23355566666543 23433 344443 1111 11 11122234589999999865 4
Q ss_pred hhccccccccccCCCh------hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccC
Q 010988 356 ILSHPSIGGFLTHCGW------NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVK 429 (496)
Q Consensus 356 ~l~~~~~~~~I~HGG~------gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~ 429 (496)
++..+++-++.+..+. +.+.|++++|+|+|+....+. .....+ + +.|+.++.. +
T Consensus 300 ~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~~---------------d 359 (412)
T PRK10307 300 LLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEPE---------------S 359 (412)
T ss_pred HHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCCC---------------C
Confidence 6778887555555332 236899999999999865431 122344 3 778877654 7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 010988 430 KEDVVKAINMLMNEGGERENRRKRAREFQM 459 (496)
Q Consensus 430 ~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~ 459 (496)
.+++.++|.++++|+...+.+.+++++...
T Consensus 360 ~~~la~~i~~l~~~~~~~~~~~~~a~~~~~ 389 (412)
T PRK10307 360 VEALVAAIAALARQALLRPKLGTVAREYAE 389 (412)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 899999999999987666677777776544
No 60
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.04 E-value=6.6e-07 Score=88.86 Aligned_cols=149 Identities=19% Similarity=0.160 Sum_probs=93.5
Q ss_pred EEEEeeCCccCCChhhHHHHHHHHHhCC-CCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhh---hhhc
Q 010988 283 VVYVCLGSICNLTSSQMIELGLGLEASK-KPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQV---LILS 358 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~---~~l~ 358 (496)
.+++..|+... ......+++++++.. .++++. +.+. .... +..-........||.+.+|+|+. .++.
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~-G~g~-~~~~-----~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~ 262 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIV-GEGP-LEAE-----LEALAAALGLLDRVRFLGRLDDEEKAALLA 262 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEE-eCCh-hHHH-----HHHHHHhcCCcceEEEcCCCCHHHHHHHHH
Confidence 56677777643 234556777777765 443333 3333 1111 11111111235799999999975 4777
Q ss_pred ccccccccc---CCChh-hHHHHHHhCCcEeccCCccccchhHHHHHHH-hhceEEecccCCCCCCcccccccccCHHHH
Q 010988 359 HPSIGGFLT---HCGWN-SSLEAISAGVPMITWPLFGDQFCNEKLIVQV-LNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 433 (496)
Q Consensus 359 ~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~r~~e~-~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 433 (496)
.+++-++.+ +.|.| ++.||+++|+|+|+....+. ...+ +. -+.|...+. -+.+++
T Consensus 263 ~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~----~~~i-~~~~~~g~~~~~---------------~d~~~~ 322 (357)
T cd03795 263 ACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTG----GSYV-NLHGVTGLVVPP---------------GDPAAL 322 (357)
T ss_pred hCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCc----hhHH-hhCCCceEEeCC---------------CCHHHH
Confidence 777733333 23444 78999999999998654433 3344 23 466766644 378999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHH
Q 010988 434 VKAINMLMNEGGERENRRKRAREFQMM 460 (496)
Q Consensus 434 ~~~i~~lL~~~~~~~~~~~~a~~l~~~ 460 (496)
.++|.++++|++..+.+++++++....
T Consensus 323 ~~~i~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 323 AEAIRRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 999999999987777777777665544
No 61
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.04 E-value=9.1e-07 Score=87.64 Aligned_cols=319 Identities=19% Similarity=0.155 Sum_probs=161.3
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCCCchhhHHH
Q 010988 19 AQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLHSTDLLFN 98 (496)
Q Consensus 19 ~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 98 (496)
..|+-.-+..+++.|.+.||+|++++........... ....... ........... ....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~----------~~~~~~~----~~~~~~~~~~~-------~~~~ 71 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDL----------LKGRLVG----VERLPVLLPVV-------PLLK 71 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhh----------ccccccc----ccccccCcchh-------hccc
Confidence 3788888999999999999999999987543322111 0000000 00000000000 0000
Q ss_pred HHHHHHhhhHHHHHHHH--hcCCCCeEEEEcCCCc---chHHHHHhcCCCeEEEecchHHHHHHHhhhcccccccccCCC
Q 010988 99 FFKSLTLLQLPLENLLK--ELAPKPSCIVSDMCYP---WTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVHENVTSK 173 (496)
Q Consensus 99 ~~~~~~~~~~~l~~ll~--~~~~~pDlVI~D~~~~---~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (496)
...........+.++++ . .+||+|++..... .+..+++..++|++..........
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~--~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------------ 131 (377)
T cd03798 72 GPLLYLLAARALLKLLKLKR--FRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNL------------------ 131 (377)
T ss_pred cchhHHHHHHHHHHHHhccc--CCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcc------------------
Confidence 11111223344556665 5 7999999885443 334456677889887432211110
Q ss_pred CCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhh--cCCceEEeCcCcCCC
Q 010988 174 SDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKT--KGGKVWCLGPVSLCN 251 (496)
Q Consensus 174 ~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~--~~~~v~~VGpl~~~~ 251 (496)
... ..............++.++..+-...+ .+... ...++..++......
T Consensus 132 --------~~~---------------~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~i~~~~~~~ 183 (377)
T cd03798 132 --------LPR---------------KRLLRALLRRALRRADAVIAVSEALAD-----ELKALGIDPEKVTVIPNGVDTE 183 (377)
T ss_pred --------cCc---------------hhhHHHHHHHHHhcCCeEEeCCHHHHH-----HHHHhcCCCCceEEcCCCcCcc
Confidence 000 000111122234556667766633322 23332 235666666432221
Q ss_pred cCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccC-CChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhh
Q 010988 252 KQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICN-LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEW 330 (496)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~ 330 (496)
.-... ..... ..+.. ..+..+++..|+... ...+.+..+++.+...+.++.+.+.+.....+.
T Consensus 184 ~~~~~----------~~~~~-~~~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~---- 247 (377)
T cd03798 184 RFSPA----------DRAEA-RKLGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREA---- 247 (377)
T ss_pred cCCCc----------chHHH-HhccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHH----
Confidence 10000 00000 11111 123366777777654 223333333333333222444443333201111
Q ss_pred hhhHHHHHHhCCCcEEEeCcchhh---hhhcccccccccc----CCChhhHHHHHHhCCcEeccCCccccchhHHHHHHH
Q 010988 331 LLEEKFEERVKGRGILILGWAPQV---LILSHPSIGGFLT----HCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQV 403 (496)
Q Consensus 331 ~lp~~~~~~~~~~nv~v~~~~pq~---~~l~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~ 403 (496)
+.+........+||.+.+++++. .++..+++ +|. -|.-+++.||+++|+|+|+-+. ......+ +.
T Consensus 248 -~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~-~~ 319 (377)
T cd03798 248 -LEALAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEII-TD 319 (377)
T ss_pred -HHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHh-cC
Confidence 11111111135789999999865 46777777 552 2456688999999999998654 3445556 46
Q ss_pred hhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCCh
Q 010988 404 LNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGG 445 (496)
Q Consensus 404 ~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~ 445 (496)
.+.|...+. -+.+++.++|.++++++.
T Consensus 320 ~~~g~~~~~---------------~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 320 GENGLLVPP---------------GDPEALAEAILRLLADPW 346 (377)
T ss_pred CcceeEECC---------------CCHHHHHHHHHHHhcCcH
Confidence 666766654 478999999999999874
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.02 E-value=4e-07 Score=89.31 Aligned_cols=97 Identities=22% Similarity=0.219 Sum_probs=67.4
Q ss_pred CCcEEEeCcch-hhhhhccccccccccCC----ChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhh-ceEEecccCC
Q 010988 342 GRGILILGWAP-QVLILSHPSIGGFLTHC----GWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLN-IGVRIGVEVP 415 (496)
Q Consensus 342 ~~nv~v~~~~p-q~~~l~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G-~g~~l~~~~~ 415 (496)
..++.+.++.. ...++..+++ +|.-. .-+++.||+++|+|+|+.+....+ ..+. ..| .|...+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~-~~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEII-EDGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhh-ccCcceEEeCC---
Confidence 56788877733 4568888887 66543 246899999999999986544333 2332 334 6776654
Q ss_pred CCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 010988 416 LDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMM 460 (496)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~ 460 (496)
.+.+++.++|.++++|++.++.++++++++.+.
T Consensus 304 ------------~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~ 336 (348)
T cd03820 304 ------------GDVEALAEALLRLMEDEELRKRMGANARESAER 336 (348)
T ss_pred ------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 468999999999999987666677776555443
No 63
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.00 E-value=1.6e-06 Score=85.93 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=66.7
Q ss_pred CCcEEEeCcchhhh---hhcccccccccc--C--------CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceE
Q 010988 342 GRGILILGWAPQVL---ILSHPSIGGFLT--H--------CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGV 408 (496)
Q Consensus 342 ~~nv~v~~~~pq~~---~l~~~~~~~~I~--H--------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~ 408 (496)
++||.+.+++|+.+ ++..+++ +|. . |.-+++.||+++|+|+|+.+.. .....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----Ccchhh-hCCCceE
Confidence 57899999998544 6667777 555 2 3346899999999999986543 233455 4544777
Q ss_pred EecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010988 409 RIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREF 457 (496)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l 457 (496)
..+. -+.+++.++|.++++|+.....+.+++++.
T Consensus 308 ~~~~---------------~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~ 341 (355)
T cd03799 308 LVPP---------------GDPEALADAIERLLDDPELRREMGEAGRAR 341 (355)
T ss_pred EeCC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 6644 378999999999999875555555555544
No 64
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.95 E-value=1e-06 Score=87.85 Aligned_cols=95 Identities=23% Similarity=0.286 Sum_probs=65.2
Q ss_pred CCcEEEeCcch-hh---hhhccccccccccC----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEeccc
Q 010988 342 GRGILILGWAP-QV---LILSHPSIGGFLTH----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVE 413 (496)
Q Consensus 342 ~~nv~v~~~~p-q~---~~l~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~ 413 (496)
..++...+|++ +. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+ +..+.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeCC-
Confidence 56788889998 43 46777777 7764 3356899999999999976542 333344 34445665544
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 414 VPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
.+.+++.+++.++++|++..+.+.+++++..
T Consensus 315 --------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 345 (365)
T cd03825 315 --------------GDPEDLAEGIEWLLADPDEREELGEAARELA 345 (365)
T ss_pred --------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4788999999999998754555555555443
No 65
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.94 E-value=3.4e-06 Score=85.74 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=69.1
Q ss_pred CCcEEEeCcchhh---hhhcccccccccc---CCCh-hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccC
Q 010988 342 GRGILILGWAPQV---LILSHPSIGGFLT---HCGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEV 414 (496)
Q Consensus 342 ~~nv~v~~~~pq~---~~l~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~ 414 (496)
.++|.+.+++|.. .++..+++ +|. +.|. .++.||+++|+|+|+.... .....+ ++-+.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEECCC--
Confidence 4689999999864 46888887 663 2333 4899999999999986543 344455 46566776654
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 415 PLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
-+.+++.++|.++++|+...+.+++++++..
T Consensus 353 -------------~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 353 -------------HDPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3788999999999998766666777766654
No 66
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.91 E-value=4.7e-06 Score=82.75 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=89.7
Q ss_pred CeEEEEeeCCccC-CChhhHHHHHHHHHhC--CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcch-hhhh
Q 010988 281 NSVVYVCLGSICN-LTSSQMIELGLGLEAS--KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAP-QVLI 356 (496)
Q Consensus 281 ~~vI~vs~GS~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p-q~~~ 356 (496)
+..+++..|.... ...+.+..++..+... +.++++ +|.+. ..+...+. +-+........++|.+.+|.+ ...+
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~i-vG~~~-~~~~~~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLI-VGDAQ-GRRFYYAE-LLELIKRLGLQDRVTFVGHCSDMPAA 260 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEE-EECCc-ccchHHHH-HHHHHHHcCCcceEEEcCCcccHHHH
Confidence 3466677777654 3344444555555442 344333 44333 11111110 100111111246899999954 3457
Q ss_pred hcccccccccc--CCCh-hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHH
Q 010988 357 LSHPSIGGFLT--HCGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 433 (496)
Q Consensus 357 l~~~~~~~~I~--HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 433 (496)
+..+++-++-+ +-|. +++.||+++|+|+|+... ......+ +.-+.|..++. -+.+++
T Consensus 261 l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~---------------~~~~~l 320 (355)
T cd03819 261 YALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVPP---------------GDAEAL 320 (355)
T ss_pred HHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeCC---------------CCHHHH
Confidence 88888833333 2233 599999999999998643 3345555 45557877755 488899
Q ss_pred HHHHHHHh-cCChhHHHHHHHHHHHHHH
Q 010988 434 VKAINMLM-NEGGERENRRKRAREFQMM 460 (496)
Q Consensus 434 ~~~i~~lL-~~~~~~~~~~~~a~~l~~~ 460 (496)
.++|..++ .|+++++.+++++++....
T Consensus 321 ~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 321 AQALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 99996555 4665566677776666544
No 67
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.89 E-value=1e-06 Score=88.25 Aligned_cols=320 Identities=13% Similarity=0.104 Sum_probs=162.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHHHHHHhhhcCCCCeEE-EEeeCCccccCCCCCCCcc
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQN-GAAITIVTTPANAARFKTVVARAMQSGLPLQL-IEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~i~~~~~~~~l~~~~~~~ 87 (496)
|||++++ ++..|+.=+..+.++|.++ +.++.++.+............. .++.. +.+. +.. .
T Consensus 1 ~~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~-----~~i~~~~~~~-------~~~--~-- 63 (365)
T TIGR00236 1 LKVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL-----FHLPPDYDLN-------IMS--P-- 63 (365)
T ss_pred CeEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh-----cCCCCCeeee-------cCC--C--
Confidence 4888766 7888999999999999887 6666666665433333332111 12221 1110 100 0
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcC--CC-cchHHHHHhcCCCeEEEecchHHHHHHHhhhccc
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDM--CY-PWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTS 164 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~--~~-~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 164 (496)
.... ..........+.+++++ .+||+|++-. .. .++..+|..+|||++.+...- .
T Consensus 64 ----~~~~----~~~~~~~~~~l~~~l~~--~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~----------- 121 (365)
T TIGR00236 64 ----GQTL----GEITSNMLEGLEELLLE--EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-R----------- 121 (365)
T ss_pred ----CCCH----HHHHHHHHHHHHHHHHH--cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-C-----------
Confidence 0011 12222334567778888 7999998753 22 367888999999998642110 0
Q ss_pred ccccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcC-CceEE
Q 010988 165 KVHENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKG-GKVWC 243 (496)
Q Consensus 165 ~~~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~~v~~ 243 (496)
+...+ ..++... ......+ .++.++..+-.. ..... ....+ .+++.
T Consensus 122 ---------s~~~~-~~~~~~~-------------~r~~~~~------~ad~~~~~s~~~-~~~l~---~~G~~~~~I~v 168 (365)
T TIGR00236 122 ---------TGDRY-SPMPEEI-------------NRQLTGH------IADLHFAPTEQA-KDNLL---RENVKADSIFV 168 (365)
T ss_pred ---------cCCCC-CCCccHH-------------HHHHHHH------HHHhccCCCHHH-HHHHH---HcCCCcccEEE
Confidence 00000 0011100 0001111 123334333221 11111 11222 36788
Q ss_pred eCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhC-----CCCeEEEEe
Q 010988 244 LGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEAS-----KKPFIWVIR 318 (496)
Q Consensus 244 VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~ 318 (496)
+|-.......... ... ...++.+.+. .++.+|+++.+-.... ...+..+++|+..+ +.++++..+
T Consensus 169 ign~~~d~~~~~~---~~~----~~~~~~~~~~--~~~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~ 238 (365)
T TIGR00236 169 TGNTVIDALLTNV---EIA----YSSPVLSEFG--EDKRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVH 238 (365)
T ss_pred eCChHHHHHHHHH---hhc----cchhHHHhcC--CCCCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 8843211100000 000 0111222222 1234666655432221 13466677777653 455555433
Q ss_pred CCCCCchhhhhhhhhHHHHHHh-CCCcEEEeCcchh---hhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccc
Q 010988 319 GGNNTSKEIQEWLLEEKFEERV-KGRGILILGWAPQ---VLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQF 394 (496)
Q Consensus 319 ~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq---~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~ 394 (496)
.+. +.. +.+.... ..++|.+.+.+++ ..++..+++ +|+-.|.. +.||+++|+|+|.++...+++
T Consensus 239 ~~~----~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~ 306 (365)
T TIGR00236 239 LNP----VVR-----EPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERP 306 (365)
T ss_pred CCh----HHH-----HHHHHHhCCCCCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCCh
Confidence 322 111 1121211 2468888876664 356667776 99877644 799999999999987655544
Q ss_pred hhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCC
Q 010988 395 CNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEG 444 (496)
Q Consensus 395 ~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~ 444 (496)
. +. ..|.+..+ . .++++|.+++.++++|+
T Consensus 307 e----~~-~~g~~~lv--~--------------~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 307 E----TV-EAGTNKLV--G--------------TDKENITKAAKRLLTDP 335 (365)
T ss_pred H----HH-hcCceEEe--C--------------CCHHHHHHHHHHHHhCh
Confidence 2 32 35666544 2 37889999999999887
No 68
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.88 E-value=3.2e-06 Score=84.49 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=88.4
Q ss_pred EEEEeeCCccCCChhhHHHHHHHHHhCCCCe-EEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchh--hh---h
Q 010988 283 VVYVCLGSICNLTSSQMIELGLGLEASKKPF-IWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQ--VL---I 356 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq--~~---~ 356 (496)
.+++..|.........+..+++|+.....++ ++.+|.+. ..+. +-+.......+++|...+|+++ .. .
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~-~~~~-----l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS-DFEK-----CKAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc-cHHH-----HHHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 5566777654322334666777777653232 33445444 2222 2111111123578999999753 22 3
Q ss_pred hcccccccccc--C--CChhhHHHHHHhCCcEeccC-CccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHH
Q 010988 357 LSHPSIGGFLT--H--CGWNSSLEAISAGVPMITWP-LFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKE 431 (496)
Q Consensus 357 l~~~~~~~~I~--H--GG~gs~~eal~~GvP~v~~P-~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~ 431 (496)
+..+++ +|. + |--.++.||+++|+|+|+.- ..+ ....+ ++-..|..++. -+.+
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~---------------~d~~ 312 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP---------------GNID 312 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC---------------CCHH
Confidence 444565 553 3 33569999999999999865 322 22344 45456766644 4899
Q ss_pred HHHHHHHHHhcCCh--hHHHHHHHHHHHHHH
Q 010988 432 DVVKAINMLMNEGG--ERENRRKRAREFQMM 460 (496)
Q Consensus 432 ~l~~~i~~lL~~~~--~~~~~~~~a~~l~~~ 460 (496)
++.++|.++++|++ ....++++++++...
T Consensus 313 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 313 EFVGKLNKVISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHHHhhHH
Confidence 99999999999885 244555555555554
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.87 E-value=7.1e-06 Score=81.42 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=66.2
Q ss_pred CCcEEEeCcchhhh---hhccccccccccC---CC-hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccC
Q 010988 342 GRGILILGWAPQVL---ILSHPSIGGFLTH---CG-WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEV 414 (496)
Q Consensus 342 ~~nv~v~~~~pq~~---~l~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~ 414 (496)
.++|.+.+|+++.+ ++..+++ +|.- .| -+++.||+++|+|+|+.+. ......+ +. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeCC--
Confidence 57899999999544 5777777 5532 22 4578999999999998653 3455556 45 77766543
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010988 415 PLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREF 457 (496)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l 457 (496)
+.+++.++|.++++|++..+.+.+++++.
T Consensus 331 --------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 --------------DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred --------------ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34899999999999876566666666655
No 70
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.85 E-value=4.5e-06 Score=82.93 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCcEEEeCc-chhh---hhhcccccccccc--C----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEec
Q 010988 342 GRGILILGW-APQV---LILSHPSIGGFLT--H----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIG 411 (496)
Q Consensus 342 ~~nv~v~~~-~pq~---~~l~~~~~~~~I~--H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~ 411 (496)
.+||...+. +|+. .++..+++ +|. + |..+++.||+++|+|+|+.+... ...+ ...+.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc
Confidence 567877654 8754 57777777 652 2 33558899999999999977654 3334 3556677665
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 010988 412 VEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQM 459 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~ 459 (496)
.. +.+++.++|.++++|++..+++.+++++...
T Consensus 318 ~~---------------d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 350 (366)
T cd03822 318 PG---------------DPAALAEAIRRLLADPELAQALRARAREYAR 350 (366)
T ss_pred CC---------------CHHHHHHHHHHHHcChHHHHHHHHHHHHHHh
Confidence 53 6889999999999987555555555555443
No 71
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.83 E-value=6.9e-06 Score=82.95 Aligned_cols=94 Identities=20% Similarity=0.135 Sum_probs=66.1
Q ss_pred CCcEEEeCcchhh---hhhccccccccccC---CC-hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccC
Q 010988 342 GRGILILGWAPQV---LILSHPSIGGFLTH---CG-WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEV 414 (496)
Q Consensus 342 ~~nv~v~~~~pq~---~~l~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~ 414 (496)
.++|.+.+++|.. .++..+++ ++.. -| -.++.||+++|+|+|+.-.. .....+ ..-+.|... .
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i-~~~~~g~~~--~- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETV-VDGETGFLC--E- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHh-ccCCceEEe--C-
Confidence 4789999999975 46777777 6632 22 24788999999999986443 333445 354556554 2
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 415 PLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
.+.+++.++|.++++|++..+.+.+++++..
T Consensus 349 -------------~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~ 379 (392)
T cd03805 349 -------------PTPEEFAEAMLKLANDPDLADRMGAAGRKRV 379 (392)
T ss_pred -------------CCHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 2678999999999998866666766666543
No 72
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.79 E-value=7.9e-07 Score=88.89 Aligned_cols=136 Identities=20% Similarity=0.206 Sum_probs=85.0
Q ss_pred CCeEEEEeeCCccCC-ChhhHHHHHHHHHhCCC-CeEEEEeCCCCCchhhhhhhhhHHHHHHhC-CCcEEEeCcchhh--
Q 010988 280 PNSVVYVCLGSICNL-TSSQMIELGLGLEASKK-PFIWVIRGGNNTSKEIQEWLLEEKFEERVK-GRGILILGWAPQV-- 354 (496)
Q Consensus 280 ~~~vI~vs~GS~~~~-~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~-- 354 (496)
+++.|++++|..... ....+..+++|++.... ++++...++. .. ... +-+....... .+|+.+.++.++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~-~~--~~~--l~~~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP-RT--RPR--IREAGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC-Ch--HHH--HHHHHHhhccCCCCEEEECCcCHHHH
Confidence 455788888876543 34557778888877533 3555444433 11 111 2211111111 4688887766544
Q ss_pred -hhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHH
Q 010988 355 -LILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 433 (496)
Q Consensus 355 -~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 433 (496)
.++..+++ +|+..| |.+.||+++|+|+|.++.. |. +..++ +.|++..+ . -+.++|
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~--~--------------~~~~~i 327 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLV--G--------------TDPEAI 327 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEec--C--------------CCHHHH
Confidence 45666777 999999 7777999999999998743 22 33443 55665444 2 257889
Q ss_pred HHHHHHHhcCC
Q 010988 434 VKAINMLMNEG 444 (496)
Q Consensus 434 ~~~i~~lL~~~ 444 (496)
.++|.++++|+
T Consensus 328 ~~~i~~ll~~~ 338 (363)
T cd03786 328 LAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHhcCc
Confidence 99999999976
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.79 E-value=4.3e-06 Score=82.01 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=81.8
Q ss_pred CeEEEEeeCCccCCChhhHHHHHHHHHhC-----CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchh-h
Q 010988 281 NSVVYVCLGSICNLTSSQMIELGLGLEAS-----KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQ-V 354 (496)
Q Consensus 281 ~~vI~vs~GS~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq-~ 354 (496)
++.+++..|+... ......+++++..+ +.++++ +|.+. ..+...+ ........+++.+.++.+. .
T Consensus 188 ~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i-~G~~~-~~~~~~~-----~~~~~~~~~~v~~~g~~~~~~ 258 (353)
T cd03811 188 DGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVI-LGDGP-LREELEA-----LAKELGLADRVHFLGFQSNPY 258 (353)
T ss_pred CceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEE-EcCCc-cHHHHHH-----HHHhcCCCccEEEecccCCHH
Confidence 3467777887653 22233444554442 344443 34333 1111111 1111112568888888764 4
Q ss_pred hhhcccccccccc--C--CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCH
Q 010988 355 LILSHPSIGGFLT--H--CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKK 430 (496)
Q Consensus 355 ~~l~~~~~~~~I~--H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~ 430 (496)
.++..+++ +|. + |.-+++.||+++|+|+|+-... .....+ ++.+.|...+.. +.
T Consensus 259 ~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~~---------------~~ 316 (353)
T cd03811 259 PYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPVG---------------DE 316 (353)
T ss_pred HHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECCC---------------CH
Confidence 57888887 553 2 3355799999999999985443 556667 577788877654 55
Q ss_pred HHH---HHHHHHHhcCChhHHHHHH
Q 010988 431 EDV---VKAINMLMNEGGERENRRK 452 (496)
Q Consensus 431 ~~l---~~~i~~lL~~~~~~~~~~~ 452 (496)
+.+ .+++.++++++.....+++
T Consensus 317 ~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 317 AALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHH
Confidence 666 6667777776643444444
No 74
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.76 E-value=3.3e-05 Score=76.26 Aligned_cols=92 Identities=24% Similarity=0.298 Sum_probs=63.2
Q ss_pred CCcEEEeCcch-hhhhhccccccccccCCC----hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCC
Q 010988 342 GRGILILGWAP-QVLILSHPSIGGFLTHCG----WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPL 416 (496)
Q Consensus 342 ~~nv~v~~~~p-q~~~l~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~ 416 (496)
..++.+.+... ...++..+++ +|..+. -+++.||+++|+|+|+. |...+...+ ++ .|..++..
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~~~~--- 317 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLVPPG--- 317 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEeCCC---
Confidence 45677766554 3468888887 775543 47899999999999984 444556666 35 56666543
Q ss_pred CCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010988 417 DFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREF 457 (496)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l 457 (496)
+.+++.++|.++++|+...+.+.+++++.
T Consensus 318 ------------~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 346 (365)
T cd03807 318 ------------DPEALAEAIEALLADPALRQALGEAARER 346 (365)
T ss_pred ------------CHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 68899999999999875444444444433
No 75
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.76 E-value=1.3e-05 Score=77.85 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=73.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDM 89 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~ 89 (496)
|||.|--. ..-|+.=+..+.++|.++||+|.+.+-... .+.+.+.. .++.+..+.. .+ .
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~-----yg~~y~~iG~--------~g-~---- 59 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDL-----YGIDYIVIGK--------HG-D---- 59 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHH-----cCCCeEEEcC--------CC-C----
Confidence 57766553 334999999999999999999998876532 23333322 3677777641 11 1
Q ss_pred CCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecc
Q 010988 90 LHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGF 150 (496)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~ 150 (496)
.....+..... ....+.+++++ .+||++|+- .+..+..+|..+|+|++.+.=.
T Consensus 60 ----~~~~Kl~~~~~-R~~~l~~~~~~--~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 60 ----SLYGKLLESIE-RQYKLLKLIKK--FKPDVAISF-GSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred ----CHHHHHHHHHH-HHHHHHHHHHh--hCCCEEEec-CcHHHHHHHHHhCCCeEEEecC
Confidence 12222223222 23445566666 699999975 5678888999999999997543
No 76
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.71 E-value=6.3e-06 Score=83.53 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=65.8
Q ss_pred CCCcEEEeCcchh-hhhhccccccccc--cC--CChh-hHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccC
Q 010988 341 KGRGILILGWAPQ-VLILSHPSIGGFL--TH--CGWN-SSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEV 414 (496)
Q Consensus 341 ~~~nv~v~~~~pq-~~~l~~~~~~~~I--~H--GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~ 414 (496)
..++|.+.+++++ ..++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+. .. +..|.|..+. .
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~-~~~~~g~lv~-~- 347 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----ID-ALPGAELLVA-A- 347 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----cc-ccCCcceEeC-C-
Confidence 3578999999985 347777887 65 33 4554 699999999999998764322 11 1335666553 3
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 415 PLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
+++++.++|.++++|+..++.+.+++++..
T Consensus 348 --------------~~~~la~ai~~ll~~~~~~~~~~~~ar~~v 377 (397)
T TIGR03087 348 --------------DPADFAAAILALLANPAEREELGQAARRRV 377 (397)
T ss_pred --------------CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 689999999999998755555666665543
No 77
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.70 E-value=2e-05 Score=78.67 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=68.1
Q ss_pred CCcEEEeCcchhhh---hhccccccccccC----------CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceE
Q 010988 342 GRGILILGWAPQVL---ILSHPSIGGFLTH----------CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGV 408 (496)
Q Consensus 342 ~~nv~v~~~~pq~~---~l~~~~~~~~I~H----------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~ 408 (496)
.++|.+.+++|+.+ ++..+++ +|.- |--+++.||+++|+|+|+-+.. .+...+ ++.+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 57899999998654 5777777 6532 2356899999999999986654 356666 4667787
Q ss_pred EecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010988 409 RIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREF 457 (496)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l 457 (496)
.++. -+.+++.++|.++++|++..+.+.+++++.
T Consensus 317 ~~~~---------------~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 350 (367)
T cd05844 317 LVPE---------------GDVAALAAALGRLLADPDLRARMGAAGRRR 350 (367)
T ss_pred EECC---------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 7754 377899999999999875455555555443
No 78
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.67 E-value=0.00012 Score=74.18 Aligned_cols=132 Identities=15% Similarity=0.218 Sum_probs=75.2
Q ss_pred CeEEEEeeCCccC-CChhhHHHHHHHHHh--CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhC-CCcEEEeCcchhh--
Q 010988 281 NSVVYVCLGSICN-LTSSQMIELGLGLEA--SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVK-GRGILILGWAPQV-- 354 (496)
Q Consensus 281 ~~vI~vs~GS~~~-~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~-- 354 (496)
+..+++..|.... ...+.+...+..+.+ .+.++++ +|.+. ..+... +...+.+ .++|...+|+|+.
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i-~G~g~-~~~~l~------~~~~~~~l~~~v~~~G~~~~~~~ 263 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFII-GGDGP-KRILLE------EMREKYNLQDRVELLGAVPHERV 263 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEE-EeCCc-hHHHHH------HHHHHhCCCCeEEEeCCCCHHHH
Confidence 3467777787754 223333333333332 3444444 34333 111111 1112222 4578889999864
Q ss_pred -hhhcccccccccc---CCChh-hHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccC
Q 010988 355 -LILSHPSIGGFLT---HCGWN-SSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVK 429 (496)
Q Consensus 355 -~~l~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~ 429 (496)
.++..+++ +|. +-|.| ++.||+++|+|+|+-+..+ ....+ ++ |-+ .+ .. .+
T Consensus 264 ~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~-~~-~~--------------~~ 319 (398)
T cd03796 264 RDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMI-LL-AE--------------PD 319 (398)
T ss_pred HHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cce-ee-cC--------------CC
Confidence 36767777 653 33444 9999999999999977643 22333 23 333 22 22 36
Q ss_pred HHHHHHHHHHHhcCC
Q 010988 430 KEDVVKAINMLMNEG 444 (496)
Q Consensus 430 ~~~l~~~i~~lL~~~ 444 (496)
.+++.++|.+++++.
T Consensus 320 ~~~l~~~l~~~l~~~ 334 (398)
T cd03796 320 VESIVRKLEEAISIL 334 (398)
T ss_pred HHHHHHHHHHHHhCh
Confidence 799999999999865
No 79
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.65 E-value=9.7e-05 Score=81.07 Aligned_cols=163 Identities=14% Similarity=0.174 Sum_probs=94.7
Q ss_pred hhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCC-----CCeEEEEeCCCCCchhh--------hhhhhhHH
Q 010988 269 SECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASK-----KPFIWVIRGGNNTSKEI--------QEWLLEEK 335 (496)
Q Consensus 269 ~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~~~~--------~~~~lp~~ 335 (496)
.++..|+.. +++ .+++..|.... ..-+..+++|+..+. .++.++++... ..... .+ +- .
T Consensus 468 ~~l~r~~~~-pdk-pvIL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gd-d~d~l~~~~~~~l~~--L~-~ 539 (1050)
T TIGR02468 468 SEIMRFFTN-PRK-PMILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRD-DIDEMSSGSSSVLTS--VL-K 539 (1050)
T ss_pred HHHHhhccc-CCC-cEEEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCc-hhhhhhccchHHHHH--HH-H
Confidence 345666643 344 44566676643 233556667765532 24445555443 11110 11 11 1
Q ss_pred HHHHh-CCCcEEEeCcchhhh---hhcccc--ccccccC---CCh-hhHHHHHHhCCcEeccCCccccchhHHHHHHHhh
Q 010988 336 FEERV-KGRGILILGWAPQVL---ILSHPS--IGGFLTH---CGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLN 405 (496)
Q Consensus 336 ~~~~~-~~~nv~v~~~~pq~~---~l~~~~--~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G 405 (496)
+.... ..++|...+++++.+ ++..++ .++||.= =|. .++.||+++|+|+|+-...+ ....+ +.-.
T Consensus 540 li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~ 614 (1050)
T TIGR02468 540 LIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLD 614 (1050)
T ss_pred HHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCC
Confidence 11112 256788888888755 444442 1337763 344 48899999999999986532 33334 3444
Q ss_pred ceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 010988 406 IGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQM 459 (496)
Q Consensus 406 ~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~ 459 (496)
-|+.++. -+.+.|.++|.++|+|+...+.|.+++++...
T Consensus 615 nGlLVdP---------------~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~ 653 (1050)
T TIGR02468 615 NGLLVDP---------------HDQQAIADALLKLVADKQLWAECRQNGLKNIH 653 (1050)
T ss_pred cEEEECC---------------CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 5777755 47889999999999988666677777665543
No 80
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.65 E-value=6.6e-05 Score=77.15 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=65.4
Q ss_pred CCcEEEeCcchhhhh---hccc--cccccccCC---C-hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecc
Q 010988 342 GRGILILGWAPQVLI---LSHP--SIGGFLTHC---G-WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGV 412 (496)
Q Consensus 342 ~~nv~v~~~~pq~~~---l~~~--~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~ 412 (496)
.++|...+++++.++ +..+ ++++||.-. | -.+++||+++|+|+|+.... .....+ ++-.-|..++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEeCC
Confidence 567888888876654 5544 224477643 3 35899999999999987653 344455 35456777655
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010988 413 EVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRARE 456 (496)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~ 456 (496)
. +++++.++|.++++|++..+.+.+++++
T Consensus 391 ~---------------d~~~la~~i~~ll~~~~~~~~~~~~a~~ 419 (439)
T TIGR02472 391 L---------------DLEAIASALEDALSDSSQWQLWSRNGIE 419 (439)
T ss_pred C---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3 7889999999999987555555555544
No 81
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.63 E-value=3.9e-05 Score=76.25 Aligned_cols=139 Identities=17% Similarity=0.125 Sum_probs=80.7
Q ss_pred eEEEEeeCCccC-CChhhHHHHHHHHHh--CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchh-hhhh
Q 010988 282 SVVYVCLGSICN-LTSSQMIELGLGLEA--SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQ-VLIL 357 (496)
Q Consensus 282 ~vI~vs~GS~~~-~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq-~~~l 357 (496)
..+++..|+... ...+.+...+..+.+ .+.++++ +|.+. .... +-.........+++...++..+ ..++
T Consensus 192 ~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~i-vG~g~-~~~~-----~~~~~~~~~~~~~v~~~g~~~~~~~~~ 264 (358)
T cd03812 192 KFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLL-VGDGE-LEEE-----IKKKVKELGLEDKVIFLGVRNDVPELL 264 (358)
T ss_pred CEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEE-EeCCc-hHHH-----HHHHHHhcCCCCcEEEecccCCHHHHH
Confidence 366677777654 223333334443333 2444444 34333 1111 1111111122568888887543 5578
Q ss_pred ccccccccccC----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHH
Q 010988 358 SHPSIGGFLTH----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 433 (496)
Q Consensus 358 ~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 433 (496)
..+++ +|.- |--+++.||+++|+|+|+-...+ ....+ +. +.|..... -+++++
T Consensus 265 ~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~---------------~~~~~~ 321 (358)
T cd03812 265 QAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD---------------ESPEIW 321 (358)
T ss_pred HhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC---------------CCHHHH
Confidence 78777 5542 44568999999999999865543 34445 35 55544433 367999
Q ss_pred HHHHHHHhcCChhHHHH
Q 010988 434 VKAINMLMNEGGERENR 450 (496)
Q Consensus 434 ~~~i~~lL~~~~~~~~~ 450 (496)
.++|.++++|++.++.+
T Consensus 322 a~~i~~l~~~~~~~~~~ 338 (358)
T cd03812 322 AEEILKLKSEDRRERSS 338 (358)
T ss_pred HHHHHHHHhCcchhhhh
Confidence 99999999998544433
No 82
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=7e-05 Score=73.22 Aligned_cols=321 Identities=17% Similarity=0.204 Sum_probs=181.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEe-CCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVT-TPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
.+-+-.-+.|-++-.+.|.++|.++ +..|++-+ ++...+.+++.. +..+...-+|+.
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D-------------- 110 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLD-------------- 110 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcC--------------
Confidence 4444446799999999999999999 88888776 666666655542 223444444411
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEE-EcC-CCcchHHHHHhcCCCeEEEecchHHHHHHHhhhccccc
Q 010988 89 MLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIV-SDM-CYPWTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKV 166 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI-~D~-~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 166 (496)
....+.++++. ++||++| ++. +++....-++..|+|.+.++.=
T Consensus 111 -----------------~~~~v~rFl~~--~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR---------------- 155 (419)
T COG1519 111 -----------------LPIAVRRFLRK--WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR---------------- 155 (419)
T ss_pred -----------------chHHHHHHHHh--cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee----------------
Confidence 11234566777 7999976 443 3335566778899999985311
Q ss_pred ccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHH-hhccccceEEEcChhhhhHHHHHHHHhhcC-CceEEe
Q 010988 167 HENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVL-AADMKSYGIIINTFEELESEYVKEYKKTKG-GKVWCL 244 (496)
Q Consensus 167 ~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~~v~~V 244 (496)
++..+... ...+..+. ..+.+.+.++..+-..-+ .+.. ++ +++...
T Consensus 156 ---LS~rS~~~-----------------------y~k~~~~~~~~~~~i~li~aQse~D~~-----Rf~~-LGa~~v~v~ 203 (419)
T COG1519 156 ---LSDRSFAR-----------------------YAKLKFLARLLFKNIDLILAQSEEDAQ-----RFRS-LGAKPVVVT 203 (419)
T ss_pred ---echhhhHH-----------------------HHHHHHHHHHHHHhcceeeecCHHHHH-----HHHh-cCCcceEEe
Confidence 00000000 01111111 123344555554422211 1222 22 346666
Q ss_pred CcCcCCCcCCchhhhhCCCCcCCh---hhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHh--CCCCeEEEEeC
Q 010988 245 GPVSLCNKQDIDKAERGKKAAIDV---SECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA--SKKPFIWVIRG 319 (496)
Q Consensus 245 Gpl~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~--~~~~~i~~~~~ 319 (496)
|-+=........ .+ ..+...+... + .+.|..+|.. ...+..-....++.+ .+..+||+=..
T Consensus 204 GNlKfd~~~~~~----------~~~~~~~~r~~l~~~--r-~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRH 269 (419)
T COG1519 204 GNLKFDIEPPPQ----------LAAELAALRRQLGGH--R-PVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRH 269 (419)
T ss_pred cceeecCCCChh----------hHHHHHHHHHhcCCC--C-ceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCC
Confidence 754222111100 11 2333344331 3 4556666643 234444455555554 24566665433
Q ss_pred CCCCchhhhhhhhhHHHHHHhCCC-----------------cEEEeCcch-hhhhhccccc----cccccCCChhhHHHH
Q 010988 320 GNNTSKEIQEWLLEEKFEERVKGR-----------------GILILGWAP-QVLILSHPSI----GGFLTHCGWNSSLEA 377 (496)
Q Consensus 320 ~~~~~~~~~~~~lp~~~~~~~~~~-----------------nv~v~~~~p-q~~~l~~~~~----~~~I~HGG~gs~~ea 377 (496)
.+ .++. +. +..... +|++.|-+- ...+++-+++ +-++-+||.| ..|+
T Consensus 270 pE----Rf~~--v~----~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEp 338 (419)
T COG1519 270 PE----RFKA--VE----NLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEP 338 (419)
T ss_pred hh----hHHH--HH----HHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhH
Confidence 33 2222 21 111122 333333332 1222332332 3356799988 6799
Q ss_pred HHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010988 378 ISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREF 457 (496)
Q Consensus 378 l~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l 457 (496)
+++|+|+|.=|+...|.+-++++ +..|.|+.++. ++.|.+++..+++|+..++.|.+++.++
T Consensus 339 a~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~~-----------------~~~l~~~v~~l~~~~~~r~~~~~~~~~~ 400 (419)
T COG1519 339 AAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQVED-----------------ADLLAKAVELLLADEDKREAYGRAGLEF 400 (419)
T ss_pred HHcCCCEEeCCccccHHHHHHHH-HhcCCeEEECC-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999 69999988832 5778888888888887777777777777
Q ss_pred HHHHH
Q 010988 458 QMMAK 462 (496)
Q Consensus 458 ~~~~~ 462 (496)
-+..+
T Consensus 401 v~~~~ 405 (419)
T COG1519 401 LAQNR 405 (419)
T ss_pred HHHhh
Confidence 66655
No 83
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.62 E-value=0.00011 Score=73.98 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=87.0
Q ss_pred EEEEeeCCccCCChhhHHHHHHHHHhC--CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhC-CCcEEE-eCcchhh---h
Q 010988 283 VVYVCLGSICNLTSSQMIELGLGLEAS--KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVK-GRGILI-LGWAPQV---L 355 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v-~~~~pq~---~ 355 (496)
++++..|.... ..-+..+++|++.. +.++++..++.. ...-..+ +.+....... ..++.. .+++++. .
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 276 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPD-TPEVAEE--VRQAVALLDRNRTGIIWINKMLPKEELVE 276 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCC-cHHHHHH--HHHHHHHhccccCceEEecCCCCHHHHHH
Confidence 45666677643 23456666777664 455555444332 1110111 1111111101 234553 4677754 4
Q ss_pred hhccccccccccC----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHH
Q 010988 356 ILSHPSIGGFLTH----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKE 431 (496)
Q Consensus 356 ~l~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~ 431 (496)
++..+++ +|.= |...++.||+++|+|+|+... ......+ +.-+.|..++..+ .+.....+
T Consensus 277 ~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~---------~~~~~~~~ 340 (388)
T TIGR02149 277 LLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDN---------SDADGFQA 340 (388)
T ss_pred HHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCC---------CcccchHH
Confidence 6777777 6642 223477999999999998654 3455556 4666788776541 00012238
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 432 DVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 432 ~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
.+.++|.++++|+..++.+.+++++..
T Consensus 341 ~l~~~i~~l~~~~~~~~~~~~~a~~~~ 367 (388)
T TIGR02149 341 ELAKAINILLADPELAKKMGIAGRKRA 367 (388)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 899999999998866666666666543
No 84
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.62 E-value=0.00011 Score=75.88 Aligned_cols=203 Identities=15% Similarity=0.077 Sum_probs=111.9
Q ss_pred hhhhhHHHHHHHHhhcCCceEEeC-cCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHH
Q 010988 222 FEELESEYVKEYKKTKGGKVWCLG-PVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMI 300 (496)
Q Consensus 222 ~~~le~~~~~~~~~~~~~~v~~VG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~ 300 (496)
...+|.+++. + .+-++.||| |+........ ..++..+-+.-.+++++|-+-.||..+-=...+-
T Consensus 368 IfPFE~~~y~---~-~gv~v~yVGHPL~d~i~~~~-----------~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllP 432 (608)
T PRK01021 368 ILPFEQNLFK---D-SPLRTVYLGHPLVETISSFS-----------PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLT 432 (608)
T ss_pred cCccCHHHHH---h-cCCCeEEECCcHHhhcccCC-----------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 3345655543 3 467899999 7754322110 1233333343334567999999998652233344
Q ss_pred HHHHHHH--hC--CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCC---cEEEeCcchhhhhhccccccccccCCChhh
Q 010988 301 ELGLGLE--AS--KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGR---GILILGWAPQVLILSHPSIGGFLTHCGWNS 373 (496)
Q Consensus 301 ~~~~a~~--~~--~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~---nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs 373 (496)
.+++|.+ .. +.++++...... . .+.+.+..... ++.+..--...+++..|++ .+.-.|--
T Consensus 433 v~l~aa~~~~l~~~l~fvvp~a~~~-----~-----~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGTa- 499 (608)
T PRK01021 433 IQVQAFLASSLASTHQLLVSSANPK-----Y-----DHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGTI- 499 (608)
T ss_pred HHHHHHHHHHhccCeEEEEecCchh-----h-----HHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCHH-
Confidence 5666666 33 345554332221 1 11111211111 2222211012578888888 88877754
Q ss_pred HHHHHHhCCcEeccC-CccccchhHHHHHHHh----------hceEEecccCCCCCC-cccccccccCHHHHHHHHHHHh
Q 010988 374 SLEAISAGVPMITWP-LFGDQFCNEKLIVQVL----------NIGVRIGVEVPLDFG-EEEEIGVLVKKEDVVKAINMLM 441 (496)
Q Consensus 374 ~~eal~~GvP~v~~P-~~~DQ~~na~r~~e~~----------G~g~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~i~~lL 441 (496)
+.|+...|+|||++= ...=-+.-+++++ +. =+|..+-++ ..+ ++ .+++++|.+++ ++|
T Consensus 500 TLEaAL~g~PmVV~YK~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPE---llqgQ~-----~~tpe~La~~l-~lL 569 (608)
T PRK01021 500 VLETALNQTPTIVTCQLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPE---FIGGKK-----DFQPEEVAAAL-DIL 569 (608)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchh---hcCCcc-----cCCHHHHHHHH-HHh
Confidence 579999999998753 2222334566665 31 012121111 111 12 58999999997 889
Q ss_pred cCChhHHHHHHHHHHHHHHHH
Q 010988 442 NEGGERENRRKRAREFQMMAK 462 (496)
Q Consensus 442 ~~~~~~~~~~~~a~~l~~~~~ 462 (496)
.|+++++.+++..+++++.+.
T Consensus 570 ~d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 570 KTSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred cCHHHHHHHHHHHHHHHHHhc
Confidence 988788888888888888763
No 85
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.60 E-value=8.5e-05 Score=74.53 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=63.9
Q ss_pred CCcEEEeCcch-hhhhhccccccccc--cC--CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCC
Q 010988 342 GRGILILGWAP-QVLILSHPSIGGFL--TH--CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPL 416 (496)
Q Consensus 342 ~~nv~v~~~~p-q~~~l~~~~~~~~I--~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~ 416 (496)
..++.+.++.. ...++..+++ +| ++ |--+++.||+++|+|+|+-... .+...+ ++-..|..++..
T Consensus 254 ~~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~~~~--- 323 (374)
T TIGR03088 254 AHLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALVPPG--- 323 (374)
T ss_pred cceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEeCCC---
Confidence 34566666544 3467888887 66 33 3355899999999999996653 345555 454567766543
Q ss_pred CCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010988 417 DFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREF 457 (496)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l 457 (496)
+.+++.++|.++++|+...+.+.+++++.
T Consensus 324 ------------d~~~la~~i~~l~~~~~~~~~~~~~a~~~ 352 (374)
T TIGR03088 324 ------------DAVALARALQPYVSDPAARRAHGAAGRAR 352 (374)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 78899999999998875455555555543
No 86
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.59 E-value=8.1e-05 Score=73.20 Aligned_cols=129 Identities=14% Similarity=0.104 Sum_probs=76.4
Q ss_pred EEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHh-CCCcEEEeCcchhhh---hhcc
Q 010988 284 VYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERV-KGRGILILGWAPQVL---ILSH 359 (496)
Q Consensus 284 I~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq~~---~l~~ 359 (496)
+.+..|.... ......++++++..+.++++.-.+.. ... +-....... ..++|.+.+++++.+ ++..
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~--~~~-----~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~ 243 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSD--PDY-----FYREIAPELLDGPDIEYLGEVGGAEKAELLGN 243 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCC--HHH-----HHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 4455566633 23345677888888877665443322 111 111111111 257899999998754 5777
Q ss_pred cccccccc--CCCh-hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHH
Q 010988 360 PSIGGFLT--HCGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKA 436 (496)
Q Consensus 360 ~~~~~~I~--HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 436 (496)
+++-++-+ +-|. .++.||+++|+|+|+-... .+...+ +.-..|... . ..+++.++
T Consensus 244 ~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~--~---------------~~~~l~~~ 301 (335)
T cd03802 244 ARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLV--D---------------SVEELAAA 301 (335)
T ss_pred CcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEe--C---------------CHHHHHHH
Confidence 77733323 2343 4799999999999987653 333344 232245443 2 27889999
Q ss_pred HHHHhcC
Q 010988 437 INMLMNE 443 (496)
Q Consensus 437 i~~lL~~ 443 (496)
|.+++..
T Consensus 302 l~~l~~~ 308 (335)
T cd03802 302 VARADRL 308 (335)
T ss_pred HHHHhcc
Confidence 9988764
No 87
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.56 E-value=9e-05 Score=73.55 Aligned_cols=130 Identities=11% Similarity=0.163 Sum_probs=76.1
Q ss_pred eEEEEeeCCccCCChhhHHHHHHHHHh-----CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchh-hh
Q 010988 282 SVVYVCLGSICNLTSSQMIELGLGLEA-----SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQ-VL 355 (496)
Q Consensus 282 ~vI~vs~GS~~~~~~~~~~~~~~a~~~-----~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq-~~ 355 (496)
..+++..|+... ......+++++.. .+.+++++ +.+. ..+...+ ........+|+.+.++..+ ..
T Consensus 188 ~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~-G~g~-~~~~~~~-----~~~~~~~~~~v~~~g~~~~~~~ 258 (360)
T cd04951 188 TFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIA-GDGP-LRATLER-----LIKALGLSNRVKLLGLRDDIAA 258 (360)
T ss_pred CEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEE-cCCC-cHHHHHH-----HHHhcCCCCcEEEecccccHHH
Confidence 366777777643 2223344444433 24565554 3333 1111111 1111112467888888754 56
Q ss_pred hhccccccccccC----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHH
Q 010988 356 ILSHPSIGGFLTH----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKE 431 (496)
Q Consensus 356 ~l~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~ 431 (496)
++..+++ +|.- |.-+++.||+++|+|+|+- |...+...+ ++ .|..... -+.+
T Consensus 259 ~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~---------------~~~~ 314 (360)
T cd04951 259 YYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI---------------SDPE 314 (360)
T ss_pred HHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC---------------CCHH
Confidence 7888887 5543 2246889999999999974 445555566 45 4444433 4788
Q ss_pred HHHHHHHHHhcCC
Q 010988 432 DVVKAINMLMNEG 444 (496)
Q Consensus 432 ~l~~~i~~lL~~~ 444 (496)
++.++|.++++++
T Consensus 315 ~~~~~i~~ll~~~ 327 (360)
T cd04951 315 ALANKIDEILKMS 327 (360)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999544
No 88
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.49 E-value=5.3e-05 Score=75.12 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=63.4
Q ss_pred CCCcEEEeCcchhh---hhhccccccccccC----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEeccc
Q 010988 341 KGRGILILGWAPQV---LILSHPSIGGFLTH----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVE 413 (496)
Q Consensus 341 ~~~nv~v~~~~pq~---~~l~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~ 413 (496)
..++|.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+-... .....+ ++ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~--~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GD--AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cC--ceeeeCC-
Confidence 47799999999875 46777776 5532 3345899999999999985542 222223 22 2444433
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010988 414 VPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREF 457 (496)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l 457 (496)
-+.+++.++|.++++|++....+.+++++.
T Consensus 321 --------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 350 (365)
T cd03809 321 --------------LDPEALAAAIERLLEDPALREELRERGLAR 350 (365)
T ss_pred --------------CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 378899999999999886666666665543
No 89
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.43 E-value=0.00057 Score=67.90 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=76.8
Q ss_pred EEeeCCccCCChhhHHHHHHHHHhCC--CCeEEEEeCCCCCchhhhhhhhhHHHH-HHhCCCcEEEeCcchhhh---hhc
Q 010988 285 YVCLGSICNLTSSQMIELGLGLEASK--KPFIWVIRGGNNTSKEIQEWLLEEKFE-ERVKGRGILILGWAPQVL---ILS 358 (496)
Q Consensus 285 ~vs~GS~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~lp~~~~-~~~~~~nv~v~~~~pq~~---~l~ 358 (496)
++..|+... ..-+..+++|++... .+++ .+|.+. ...... +.+. .....++|.+.+++|+.+ ++.
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~-ivG~~~-~~~~~~-----~~~~~~~~~~~~V~~~g~~~~~~~~~~~~ 266 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLV-IVGNAD-HNTPYG-----KLLKEKAAADPRIIFVGPIYDQELLELLR 266 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEE-EEcCCC-CcchHH-----HHHHHHhCCCCcEEEccccChHHHHHHHH
Confidence 345677653 233555667776653 4444 444432 111111 1222 112367999999999864 555
Q ss_pred cccccccccCCCh-----hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHH
Q 010988 359 HPSIGGFLTHCGW-----NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 433 (496)
Q Consensus 359 ~~~~~~~I~HGG~-----gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 433 (496)
.+++ ++.+.-. +++.||+++|+|+|+..... +...+ +. -|...+.. +. +
T Consensus 267 ~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~---------------~~--l 320 (363)
T cd04955 267 YAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG---------------DD--L 320 (363)
T ss_pred hCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc---------------hH--H
Confidence 5665 5554332 37899999999999876542 22223 23 23333222 11 9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 010988 434 VKAINMLMNEGGERENRRKRARE 456 (496)
Q Consensus 434 ~~~i~~lL~~~~~~~~~~~~a~~ 456 (496)
.++|.++++|++..+.+.+++++
T Consensus 321 ~~~i~~l~~~~~~~~~~~~~~~~ 343 (363)
T cd04955 321 ASLLEELEADPEEVSAMAKAARE 343 (363)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHH
Confidence 99999999987444444444443
No 90
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.42 E-value=4.9e-05 Score=75.53 Aligned_cols=139 Identities=14% Similarity=0.190 Sum_probs=89.7
Q ss_pred EEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhh---hhhccc
Q 010988 284 VYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQV---LILSHP 360 (496)
Q Consensus 284 I~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~---~~l~~~ 360 (496)
.++..|+... ......+++|++..+.+++++ |.+. . .+.+.. ...+||.+.+++|+. .++..+
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~iv-G~g~-~---------~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~a 262 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVI-GDGP-E---------LDRLRA-KAGPNVTFLGRVSDEELRDLYARA 262 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEE-ECCh-h---------HHHHHh-hcCCCEEEecCCCHHHHHHHHHhC
Confidence 3455666653 334667788888877775554 4443 1 112222 246899999999974 467788
Q ss_pred cccccccCCChh-hHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHH
Q 010988 361 SIGGFLTHCGWN-SSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINM 439 (496)
Q Consensus 361 ~~~~~I~HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 439 (496)
++-++-+.-|.| ++.||+++|+|+|+....+ ....+ ++-+.|..++.. +.+.+.++|..
T Consensus 263 d~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~~---------------~~~~la~~i~~ 322 (351)
T cd03804 263 RAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEEQ---------------TVESLAAAVER 322 (351)
T ss_pred CEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCCC---------------CHHHHHHHHHH
Confidence 873333444444 5789999999999976533 33345 455678777554 78889999999
Q ss_pred HhcCC-hhHHHHHHHHHH
Q 010988 440 LMNEG-GERENRRKRARE 456 (496)
Q Consensus 440 lL~~~-~~~~~~~~~a~~ 456 (496)
+++|+ ..++.+++++++
T Consensus 323 l~~~~~~~~~~~~~~~~~ 340 (351)
T cd03804 323 FEKNEDFDPQAIRAHAER 340 (351)
T ss_pred HHhCcccCHHHHHHHHHh
Confidence 99987 334445554443
No 91
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.40 E-value=3.5e-06 Score=83.20 Aligned_cols=253 Identities=17% Similarity=0.183 Sum_probs=125.6
Q ss_pred HHHHhhhHHHHHHHHhcCCCCeEEEE--cCCCc-chHHHHHhcCCCeEEEecchHHHHHHHhhhcccccccccCCCCCcc
Q 010988 101 KSLTLLQLPLENLLKELAPKPSCIVS--DMCYP-WTVDTAARFNIPRISFHGFSCFCLLCLYNLHTSKVHENVTSKSDYF 177 (496)
Q Consensus 101 ~~~~~~~~~l~~ll~~~~~~pDlVI~--D~~~~-~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (496)
.........+.+.++. .+||+||+ |.... +++.+|..++||++-+... ... . .
T Consensus 50 ~~~~~~~~~~~~~~~~--~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG-lRs-------------------~--d 105 (346)
T PF02350_consen 50 KSTGLAIIELADVLER--EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG-LRS-------------------G--D 105 (346)
T ss_dssp HHHHHHHHHHHHHHHH--HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-------------------------S---
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC-CCc-------------------c--c
Confidence 3334455566777777 69999874 43333 7788999999997763211 000 0 0
Q ss_pred ccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHh-hc-CCceEEeCcCcCCCcCCc
Q 010988 178 VVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKK-TK-GGKVWCLGPVSLCNKQDI 255 (496)
Q Consensus 178 ~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~-~~-~~~v~~VGpl~~~~~~~~ 255 (496)
..-+.+ .+..+.... .-+..++..+-... +.+.+ .. +.+++.+|......-...
T Consensus 106 ~~~g~~-----------------de~~R~~i~--~la~lhf~~t~~~~-----~~L~~~G~~~~rI~~vG~~~~D~l~~~ 161 (346)
T PF02350_consen 106 RTEGMP-----------------DEINRHAID--KLAHLHFAPTEEAR-----ERLLQEGEPPERIFVVGNPGIDALLQN 161 (346)
T ss_dssp TTSSTT-----------------HHHHHHHHH--HH-SEEEESSHHHH-----HHHHHTT--GGGEEE---HHHHHHHHH
T ss_pred cCCCCc-----------------hhhhhhhhh--hhhhhhccCCHHHH-----HHHHhcCCCCCeEEEEChHHHHHHHHh
Confidence 000111 222222222 22455666663332 22222 12 368999995433211000
Q ss_pred hhhhhCCCCcCChhhh--ccccCCCCCCeEEEEeeCCccCCC-h---hhHHHHHHHHHhC-CCCeEEEEeCCCCCchhhh
Q 010988 256 DKAERGKKAAIDVSEC--LNWLDSWPPNSVVYVCLGSICNLT-S---SQMIELGLGLEAS-KKPFIWVIRGGNNTSKEIQ 328 (496)
Q Consensus 256 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~vI~vs~GS~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~ 328 (496)
. .. ...+. ..++.. .+++.|+|++=...... + ..+..+++++.+. +.++||.+.... . ...
T Consensus 162 ~--~~------~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p-~--~~~ 229 (346)
T PF02350_consen 162 K--EE------IEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP-R--GSD 229 (346)
T ss_dssp H--HT------TCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H-H--HHH
T ss_pred H--HH------HhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc-h--HHH
Confidence 0 00 01111 122222 46779999995544444 3 3444566666665 778899887543 1 111
Q ss_pred hhhhhHHHHHHhCCCcEEEeCcch---hhhhhccccccccccCCChhhHH-HHHHhCCcEeccCCccccchhHHHHHHHh
Q 010988 329 EWLLEEKFEERVKGRGILILGWAP---QVLILSHPSIGGFLTHCGWNSSL-EAISAGVPMITWPLFGDQFCNEKLIVQVL 404 (496)
Q Consensus 329 ~~~lp~~~~~~~~~~nv~v~~~~p---q~~~l~~~~~~~~I~HGG~gs~~-eal~~GvP~v~~P~~~DQ~~na~r~~e~~ 404 (496)
. +-+.+. .-+|+.+.+-++ ...+|.++++ +|+..| |++ ||.+.|+|+|.+ .++..|- |-+
T Consensus 230 ~--i~~~l~---~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i------R~~geRq-e~r 293 (346)
T PF02350_consen 230 I--IIEKLK---KYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI------RDSGERQ-EGR 293 (346)
T ss_dssp H--HHHHHT---T-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC------SSS-S-H-HHH
T ss_pred H--HHHHhc---ccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe------cCCCCCH-HHH
Confidence 1 211111 124898887765 4568888888 999999 777 999999999999 3333333 233
Q ss_pred hceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcC
Q 010988 405 NIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNE 443 (496)
Q Consensus 405 G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~ 443 (496)
..|-.+-.. .++++|.+++.+++++
T Consensus 294 ~~~~nvlv~--------------~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 294 ERGSNVLVG--------------TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HTTSEEEET--------------SSHHHHHHHHHHHHH-
T ss_pred hhcceEEeC--------------CCHHHHHHHHHHHHhC
Confidence 333332233 7899999999999975
No 92
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.37 E-value=0.00025 Score=70.11 Aligned_cols=206 Identities=18% Similarity=0.168 Sum_probs=107.0
Q ss_pred hhhhhHHHHHHHHhhcCCceEEeC-cCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHH
Q 010988 222 FEELESEYVKEYKKTKGGKVWCLG-PVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMI 300 (496)
Q Consensus 222 ~~~le~~~~~~~~~~~~~~v~~VG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~ 300 (496)
...+|++++. + .+-++.||| |+........ .+....+.+ -.+++++|.+--||...-=...+-
T Consensus 140 ifPFE~~~y~---~-~g~~~~~VGHPl~d~~~~~~-----------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP 203 (373)
T PF02684_consen 140 IFPFEPEFYK---K-HGVPVTYVGHPLLDEVKPEP-----------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLP 203 (373)
T ss_pred CCcccHHHHh---c-cCCCeEEECCcchhhhccCC-----------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHH
Confidence 3345555433 2 346799999 7754422211 122333333 223566999999998652222233
Q ss_pred HHHHHHHh-----CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEe-CcchhhhhhccccccccccCCChhhH
Q 010988 301 ELGLGLEA-----SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILIL-GWAPQVLILSHPSIGGFLTHCGWNSS 374 (496)
Q Consensus 301 ~~~~a~~~-----~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~-~~~pq~~~l~~~~~~~~I~HGG~gs~ 374 (496)
.++++.+. .+.++++...... ..++ +-.-+ .. ...++.+. ..-.-.+++..+++ .+.-.|- .+
T Consensus 204 ~~l~aa~~l~~~~p~l~fvvp~a~~~-----~~~~-i~~~~-~~-~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aT 272 (373)
T PF02684_consen 204 IFLEAAKLLKKQRPDLQFVVPVAPEV-----HEEL-IEEIL-AE-YPPDVSIVIIEGESYDAMAAADA--ALAASGT-AT 272 (373)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCHH-----HHHH-HHHHH-Hh-hCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HH
Confidence 34555433 3556666554433 1110 10011 11 12222221 22234567888887 7776664 46
Q ss_pred HHHHHhCCcEeccC-CccccchhHHHHHHHhhceEEec-----ccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHH
Q 010988 375 LEAISAGVPMITWP-LFGDQFCNEKLIVQVLNIGVRIG-----VEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERE 448 (496)
Q Consensus 375 ~eal~~GvP~v~~P-~~~DQ~~na~r~~e~~G~g~~l~-----~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~ 448 (496)
.|+...|+|||++= ...=-+..|++++ +... +.+. ..--.++=+ ..++++.|.+++..+|+|++.++
T Consensus 273 LE~Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~-isL~Niia~~~v~PEliQ-----~~~~~~~i~~~~~~ll~~~~~~~ 345 (373)
T PF02684_consen 273 LEAALLGVPMVVAYKVSPLTYFIAKRLV-KVKY-ISLPNIIAGREVVPELIQ-----EDATPENIAAELLELLENPEKRK 345 (373)
T ss_pred HHHHHhCCCEEEEEcCcHHHHHHHHHhh-cCCE-eechhhhcCCCcchhhhc-----ccCCHHHHHHHHHHHhcCHHHHH
Confidence 79999999997753 3333445566665 3332 1121 000001111 25899999999999999885444
Q ss_pred HHHHHHHHHHHHH
Q 010988 449 NRRKRAREFQMMA 461 (496)
Q Consensus 449 ~~~~~a~~l~~~~ 461 (496)
..+...+++.+..
T Consensus 346 ~~~~~~~~~~~~~ 358 (373)
T PF02684_consen 346 KQKELFREIRQLL 358 (373)
T ss_pred HHHHHHHHHHHhh
Confidence 4444444444443
No 93
>PLN02275 transferase, transferring glycosyl groups
Probab=98.36 E-value=0.0016 Score=65.36 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=52.1
Q ss_pred CCCcEEEeC-cchhhh---hhcccccccccc----C--CC-hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEE
Q 010988 341 KGRGILILG-WAPQVL---ILSHPSIGGFLT----H--CG-WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVR 409 (496)
Q Consensus 341 ~~~nv~v~~-~~pq~~---~l~~~~~~~~I~----H--GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~ 409 (496)
+-+|+.... |+|..+ ++..+++ +|. - -| -+++.||+++|+|+|+... ..+...+ ++-+.|..
T Consensus 284 ~l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~l 356 (371)
T PLN02275 284 NLRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLL 356 (371)
T ss_pred CCCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEE
Confidence 345676655 788755 4777777 763 1 12 2479999999999999653 2355566 56667876
Q ss_pred ecccCCCCCCcccccccccCHHHHHHHHHHHh
Q 010988 410 IGVEVPLDFGEEEEIGVLVKKEDVVKAINMLM 441 (496)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL 441 (496)
.+ +.+++.++|.++|
T Consensus 357 v~-----------------~~~~la~~i~~l~ 371 (371)
T PLN02275 357 FS-----------------SSSELADQLLELL 371 (371)
T ss_pred EC-----------------CHHHHHHHHHHhC
Confidence 52 3677888888765
No 94
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.36 E-value=5.2e-05 Score=75.65 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=80.9
Q ss_pred CeEEEEeeCCcc--C-CChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhC-CCcEEEeCcch---h
Q 010988 281 NSVVYVCLGSIC--N-LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVK-GRGILILGWAP---Q 353 (496)
Q Consensus 281 ~~vI~vs~GS~~--~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~p---q 353 (496)
++.|+|++=... . ...+.+..+++++...+.++++......-.... +-+.+..... .+|+.+.+-++ .
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~-----i~~~i~~~~~~~~~v~l~~~l~~~~~ 275 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRI-----INEAIEEYVNEHPNFRLFKSLGQERY 275 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchH-----HHHHHHHHhcCCCCEEEECCCChHHH
Confidence 458888885443 2 446678899999988776666665443201111 1112222222 46888887655 5
Q ss_pred hhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHHHHH--hhceEEecccCCCCCCcccccccccCHH
Q 010988 354 VLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQV--LNIGVRIGVEVPLDFGEEEEIGVLVKKE 431 (496)
Q Consensus 354 ~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~--~G~g~~l~~~~~~~~~~~~~~~~~~~~~ 431 (496)
..++.++++ +|+.++.|- .||.+.|||+|.+- + |- |- .|-.+. ... .+++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~------R~-e~~~~g~nvl-~vg--------------~~~~ 327 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---T------RQ-KGRLRADSVI-DVD--------------PDKE 327 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---C------Cc-hhhhhcCeEE-EeC--------------CCHH
Confidence 568888888 998875554 99999999999774 2 22 22 233322 122 5789
Q ss_pred HHHHHHHHHhc
Q 010988 432 DVVKAINMLMN 442 (496)
Q Consensus 432 ~l~~~i~~lL~ 442 (496)
+|.+++.++++
T Consensus 328 ~I~~a~~~~~~ 338 (365)
T TIGR03568 328 EIVKAIEKLLD 338 (365)
T ss_pred HHHHHHHHHhC
Confidence 99999999654
No 95
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.34 E-value=0.0016 Score=66.09 Aligned_cols=95 Identities=19% Similarity=0.249 Sum_probs=67.5
Q ss_pred CCcEEEeCcchhhh---hhcccccccccc--C-------CCh-hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceE
Q 010988 342 GRGILILGWAPQVL---ILSHPSIGGFLT--H-------CGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGV 408 (496)
Q Consensus 342 ~~nv~v~~~~pq~~---~l~~~~~~~~I~--H-------GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~ 408 (496)
.++|.+.+|+|+.+ ++..+++ +|. . -|. +++.||+++|+|+|+.... .....+ ++-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceE
Confidence 56899999999754 6777777 664 2 344 4689999999999987543 233444 3545677
Q ss_pred EecccCCCCCCcccccccccCHHHHHHHHHHHhc-CChhHHHHHHHHHHHH
Q 010988 409 RIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMN-EGGERENRRKRAREFQ 458 (496)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~-~~~~~~~~~~~a~~l~ 458 (496)
.++. -+.+++.++|.++++ |++..+.+.+++++..
T Consensus 351 lv~~---------------~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v 386 (406)
T PRK15427 351 LVPE---------------NDAQALAQRLAAFSQLDTDELAPVVKRAREKV 386 (406)
T ss_pred EeCC---------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6654 378999999999998 7755556666665543
No 96
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.32 E-value=0.0016 Score=65.31 Aligned_cols=93 Identities=20% Similarity=0.200 Sum_probs=60.1
Q ss_pred CCcEEEeCcc--hh---hhhhccccccccccCC---C-hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecc
Q 010988 342 GRGILILGWA--PQ---VLILSHPSIGGFLTHC---G-WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGV 412 (496)
Q Consensus 342 ~~nv~v~~~~--pq---~~~l~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~ 412 (496)
.+++.+.++. ++ ..++..+++ +|.-. | -.++.||+++|+|+|+-... .....+ +.-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC-
Confidence 4578777776 43 246667776 77532 3 34899999999999986543 233345 3545565432
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 413 EVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
+.+.+..+|.++++|++.++.+.+++++..
T Consensus 323 ----------------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~ 352 (372)
T cd03792 323 ----------------TVEEAAVRILYLLRDPELRRKMGANAREHV 352 (372)
T ss_pred ----------------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 245677799999988755566666665543
No 97
>PLN02949 transferase, transferring glycosyl groups
Probab=98.32 E-value=0.0017 Score=66.76 Aligned_cols=97 Identities=16% Similarity=0.096 Sum_probs=60.8
Q ss_pred CCcEEEeCcchhhh---hhcccccccccc---CCChh-hHHHHHHhCCcEeccCCccccchhHHHHHHH-hh-ceEEecc
Q 010988 342 GRGILILGWAPQVL---ILSHPSIGGFLT---HCGWN-SSLEAISAGVPMITWPLFGDQFCNEKLIVQV-LN-IGVRIGV 412 (496)
Q Consensus 342 ~~nv~v~~~~pq~~---~l~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~r~~e~-~G-~g~~l~~ 412 (496)
.++|...+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+--. ..+.+. .| .|..
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l--- 405 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFL--- 405 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCccccc---
Confidence 57899999998654 6777777 662 33444 7999999999999976543100 011000 01 1211
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHH
Q 010988 413 EVPLDFGEEEEIGVLVKKEDVVKAINMLMNE-GGERENRRKRAREFQMM 460 (496)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~-~~~~~~~~~~a~~l~~~ 460 (496)
. -+.+++.++|.+++++ +..++.+.+++++-.+.
T Consensus 406 ~--------------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 406 A--------------TTVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred C--------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1 2678999999999985 44455666666655433
No 98
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=0.00023 Score=68.97 Aligned_cols=365 Identities=14% Similarity=0.106 Sum_probs=176.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
|+||.+++.-..|++.-. .|.++|.++=-+|.|+.-..- .+++. |++ .+ -..+.+.
T Consensus 1 ~~ki~i~AGE~SGDllGa-~LikaLk~~~~~~efvGvgG~--~m~ae---------G~~--sl----------~~~~els 56 (381)
T COG0763 1 MLKIALSAGEASGDLLGA-GLIKALKARYPDVEFVGVGGE--KMEAE---------GLE--SL----------FDMEELS 56 (381)
T ss_pred CceEEEEecccchhhHHH-HHHHHHHhhCCCeEEEEeccH--HHHhc---------cCc--cc----------cCHHHHH
Confidence 468999998888887753 567778777227777765421 11111 221 11 1111122
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEE-EcCCCc--chHHHHHhcC--CCeEEEecchHHHHHHHhhhcc
Q 010988 89 MLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIV-SDMCYP--WTVDTAARFN--IPRISFHGFSCFCLLCLYNLHT 163 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI-~D~~~~--~a~~~A~~lg--iP~v~~~~~~~~~~~~~~~~~~ 163 (496)
.++..+....+.......++.++.+++ .+||++| .|+..+ -...-.++.| +|.+.+.
T Consensus 57 vmGf~EVL~~lp~llk~~~~~~~~i~~---~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV--------------- 118 (381)
T COG0763 57 VMGFVEVLGRLPRLLKIRRELVRYILA---NKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYV--------------- 118 (381)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHh---cCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEE---------------
Confidence 222223344444444434444445554 4999987 674333 3344445667 8888743
Q ss_pred cccccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCCceEE
Q 010988 164 SKVHENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGGKVWC 243 (496)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~ 243 (496)
.|+.|. ++.. ....+. ...+. +-.+..+|+++++. .+-...|
T Consensus 119 ---------------~PsVWA---Wr~~-----------Ra~~i~---~~~D~--lLailPFE~~~y~k----~g~~~~y 160 (381)
T COG0763 119 ---------------SPSVWA---WRPK-----------RAVKIA---KYVDH--LLAILPFEPAFYDK----FGLPCTY 160 (381)
T ss_pred ---------------Ccceee---echh-----------hHHHHH---HHhhH--eeeecCCCHHHHHh----cCCCeEE
Confidence 222221 1100 001111 11111 12334466665443 2344899
Q ss_pred eC-cCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHh-----CCCCeEEEE
Q 010988 244 LG-PVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEA-----SKKPFIWVI 317 (496)
Q Consensus 244 VG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~-----~~~~~i~~~ 317 (496)
|| |+....+... ....+.+-+.-..+++++.+-.||...--......+.+|... .+.+|++-+
T Consensus 161 VGHpl~d~i~~~~-----------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~ 229 (381)
T COG0763 161 VGHPLADEIPLLP-----------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPL 229 (381)
T ss_pred eCChhhhhccccc-----------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 99 6644322111 133344444444456699999999866222222223333332 366777665
Q ss_pred eCCCCCchhhhhhhhhHHHHHHhC-CCcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCC-ccccch
Q 010988 318 RGGNNTSKEIQEWLLEEKFEERVK-GRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPL-FGDQFC 395 (496)
Q Consensus 318 ~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~-~~DQ~~ 395 (496)
.... ... +-........ .-+..+.+.-- ..++..+++ .+.-+|-. +.|+..+|+|||+.=- ..=-+.
T Consensus 230 ~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~-~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~ 298 (381)
T COG0763 230 VNAK-----YRR--IIEEALKWEVAGLSLILIDGEK-RKAFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPITYF 298 (381)
T ss_pred CcHH-----HHH--HHHHHhhccccCceEEecCchH-HHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHHHHH
Confidence 4442 111 1011100000 01122211111 235666666 77777754 5699999999987521 111122
Q ss_pred hHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 010988 396 NEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMI 475 (496)
Q Consensus 396 na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~ 475 (496)
-+++.+ .....--.+.--..+--+| -.....+++.|.+++..++.|+..++.+++..++|+..++ .+.+...+
T Consensus 299 iak~lv-k~~yisLpNIi~~~~ivPE-liq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~-----~~~~~e~a 371 (381)
T COG0763 299 IAKRLV-KLPYVSLPNILAGREIVPE-LIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR-----EDPASEIA 371 (381)
T ss_pred HHHHhc-cCCcccchHHhcCCccchH-HHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc-----CCcHHHHH
Confidence 344443 2222111100000000000 0012589999999999999988666777777877777765 33344555
Q ss_pred HHHHHHH
Q 010988 476 KLLIQDI 482 (496)
Q Consensus 476 ~~~~~~~ 482 (496)
++++-++
T Consensus 372 A~~vl~~ 378 (381)
T COG0763 372 AQAVLEL 378 (381)
T ss_pred HHHHHHH
Confidence 5554443
No 99
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.23 E-value=0.0023 Score=68.93 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=58.3
Q ss_pred CCcEEEeCcc-hh---hhhhcc-cc-cccccc---CCCh-hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEec
Q 010988 342 GRGILILGWA-PQ---VLILSH-PS-IGGFLT---HCGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIG 411 (496)
Q Consensus 342 ~~nv~v~~~~-pq---~~~l~~-~~-~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~ 411 (496)
.++|...++. +. ..++.. ++ .++||. .=|. .++.||+++|+|+|+--. ......+ ++-.-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV-~dg~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEII-QDGVSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEeC
Confidence 4678777764 32 234432 21 233663 3333 388999999999998544 3455566 4555687776
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHh----cCChhHHHHHHHHH
Q 010988 412 VEVPLDFGEEEEIGVLVKKEDVVKAINMLM----NEGGERENRRKRAR 455 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL----~~~~~~~~~~~~a~ 455 (496)
.. +.+++.++|.+++ +|++..+.+.++++
T Consensus 693 p~---------------D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~ 725 (784)
T TIGR02470 693 PY---------------HGEEAAEKIVDFFEKCDEDPSYWQKISQGGL 725 (784)
T ss_pred CC---------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 64 6788888888775 56655555555543
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.0047 Score=66.34 Aligned_cols=95 Identities=23% Similarity=0.255 Sum_probs=62.7
Q ss_pred CCcEEEeCcchh-hhhhcccccccccc---CCC-hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCC
Q 010988 342 GRGILILGWAPQ-VLILSHPSIGGFLT---HCG-WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPL 416 (496)
Q Consensus 342 ~~nv~v~~~~pq-~~~l~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~ 416 (496)
.++|.+.+|.+. ..++..+++ +|. +.| -+++.||+++|+|+|+.... .....+ ++-.-|..++..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCC---
Confidence 578999899875 447777777 654 455 45888999999999997653 344455 454468887765
Q ss_pred CCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010988 417 DFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRARE 456 (496)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~ 456 (496)
..+.+++.+++.+++.+......+++++++
T Consensus 643 ----------d~~~~~La~aL~~ll~~l~~~~~l~~~ar~ 672 (694)
T PRK15179 643 ----------TVTAPDVAEALARIHDMCAADPGIARKAAD 672 (694)
T ss_pred ----------CCChHHHHHHHHHHHhChhccHHHHHHHHH
Confidence 356667777777766543222245554443
No 101
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.14 E-value=6.9e-06 Score=67.74 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=76.5
Q ss_pred EEEEeeCCccCCChhhHH-----HHHHHHHhCCC-CeEEEEeCCCCCchhhhhhhhhHHHHHHhCCC--cEEEeCcchh-
Q 010988 283 VVYVCLGSICNLTSSQMI-----ELGLGLEASKK-PFIWVIRGGNNTSKEIQEWLLEEKFEERVKGR--GILILGWAPQ- 353 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~-----~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~--nv~v~~~~pq- 353 (496)
.+||+-||... .+++. +.++.+.+.+. +.|...+.+. . + .+...+.....+ .+...+|-|-
T Consensus 5 ~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-~---~----~~d~~~~~~k~~gl~id~y~f~psl 74 (170)
T KOG3349|consen 5 TVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-P---F----FGDPIDLIRKNGGLTIDGYDFSPSL 74 (170)
T ss_pred EEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-c---C----CCCHHHhhcccCCeEEEEEecCccH
Confidence 89999999874 22222 34555566655 6677888773 1 0 222222111223 4556677774
Q ss_pred hhhhccccccccccCCChhhHHHHHHhCCcEeccCCc----cccchhHHHHHHHhhceEE
Q 010988 354 VLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLF----GDQFCNEKLIVQVLNIGVR 409 (496)
Q Consensus 354 ~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~----~DQ~~na~r~~e~~G~g~~ 409 (496)
.+....+++ +|+|+|.||++|.|..|+|.|+++.- -.|-.-|..++ +.|.=..
T Consensus 75 ~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~ 131 (170)
T KOG3349|consen 75 TEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYY 131 (170)
T ss_pred HHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEE
Confidence 555556676 99999999999999999999999963 46888899995 7665433
No 102
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=0.0018 Score=63.05 Aligned_cols=328 Identities=14% Similarity=0.121 Sum_probs=171.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCcch-hhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCC
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNG-AAITIVTTPANA-ARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGS 84 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rG-H~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~ 84 (496)
|+|+||+++. +++=.+.=+..|.+++.+.+ .+..++.+.... ..+-+.. ++...++.|..+
T Consensus 1 m~~~Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~---------le~~~i~~pdy~------- 63 (383)
T COG0381 1 MKMLKVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV---------LELFGIRKPDYD------- 63 (383)
T ss_pred CCceEEEEEE-ecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH---------HHHhCCCCCCcc-------
Confidence 4577777765 88889999999999999886 776666665433 1222221 222222211111
Q ss_pred CcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEE--cC-CCcchHHHHHhcCCCeEEEecchHHHHHHHhhh
Q 010988 85 ENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVS--DM-CYPWTVDTAARFNIPRISFHGFSCFCLLCLYNL 161 (496)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~--D~-~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 161 (496)
-... +....+......+...+.+++++ .+||+|++ |. .+.+++.+|...+||+.-+-..--
T Consensus 64 L~i~-----~~~~tl~~~t~~~i~~~~~vl~~--~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlR--------- 127 (383)
T COG0381 64 LNIM-----KPGQTLGEITGNIIEGLSKVLEE--EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLR--------- 127 (383)
T ss_pred hhcc-----ccCCCHHHHHHHHHHHHHHHHHh--hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccc---------
Confidence 0000 00111223334455567777777 79999985 43 334778899999999986321100
Q ss_pred cccccccccCCCCCccccCCCCCCcCCccccccCCCCChHHHHHHHHhhccccceEEEcChhhhhHHHHHHHHhhcCC-c
Q 010988 162 HTSKVHENVTSKSDYFVVPGLPDQIEMTKVQVPLMRENSKDFGELVLAADMKSYGIIINTFEELESEYVKEYKKTKGG-K 240 (496)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~-~ 240 (496)
....+ +|. +.-+++... -+..++.++-..-+ ...++..++ +
T Consensus 128 ------------t~~~~---~PE-----------------E~NR~l~~~--~S~~hfapte~ar~----nLl~EG~~~~~ 169 (383)
T COG0381 128 ------------TGDLY---FPE-----------------EINRRLTSH--LSDLHFAPTEIARK----NLLREGVPEKR 169 (383)
T ss_pred ------------cCCCC---CcH-----------------HHHHHHHHH--hhhhhcCChHHHHH----HHHHcCCCccc
Confidence 00001 111 111111111 01222333311111 112233444 5
Q ss_pred eEEeCcCcCCCcCCchhhhhCCCCcCChhhhccc-cCCCCCCeEEEEeeCCccCCChhhHHHHHHHHH----hCCCCeEE
Q 010988 241 VWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNW-LDSWPPNSVVYVCLGSICNLTSSQMIELGLGLE----ASKKPFIW 315 (496)
Q Consensus 241 v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~----~~~~~~i~ 315 (496)
+..+|-.....-... +... ..+...... +.. +.+..|++|+=-..+.. +-+..|++++. .. ..+.+
T Consensus 170 IfvtGnt~iDal~~~----~~~~--~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~v 240 (383)
T COG0381 170 IFVTGNTVIDALLNT----RDRV--LEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIV 240 (383)
T ss_pred eEEeCChHHHHHHHH----Hhhh--ccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceE
Confidence 777774322211000 0000 001111111 222 23458888875554444 34555555443 44 34445
Q ss_pred EEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEe---CcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccc
Q 010988 316 VIRGGNNTSKEIQEWLLEEKFEERVKGRGILIL---GWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGD 392 (496)
Q Consensus 316 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~---~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~D 392 (496)
++..+. . ....+ + .+......+++.+. +|.+...++.++-+ ++|-.| |-.-||-..|+|++++=...+
T Consensus 241 iyp~H~-~-~~v~e--~--~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TE 311 (383)
T COG0381 241 IYPVHP-R-PRVRE--L--VLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTE 311 (383)
T ss_pred EEeCCC-C-hhhhH--H--HHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCC
Confidence 555554 1 12222 1 11111124467654 45677888988877 888776 334589999999999999999
Q ss_pred cchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCC
Q 010988 393 QFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEG 444 (496)
Q Consensus 393 Q~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~ 444 (496)
++. ++ +.|.-+.+ . .+++.+.+++..+++++
T Consensus 312 RPE---~v--~agt~~lv--g--------------~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 312 RPE---GV--EAGTNILV--G--------------TDEENILDAATELLEDE 342 (383)
T ss_pred Ccc---ce--ecCceEEe--C--------------ccHHHHHHHHHHHhhCh
Confidence 997 33 33444444 2 57799999999999987
No 103
>PLN00142 sucrose synthase
Probab=98.03 E-value=0.001 Score=71.59 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=56.4
Q ss_pred CCcEEEeCc----chhhhhhcc-c-ccccccc---CCChh-hHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEec
Q 010988 342 GRGILILGW----APQVLILSH-P-SIGGFLT---HCGWN-SSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIG 411 (496)
Q Consensus 342 ~~nv~v~~~----~pq~~~l~~-~-~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~ 411 (496)
.++|...+. .+..++... + +.++||. .-|.| ++.||+++|+|+|+-.. ......+ ++-.-|..++
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~LV~ 715 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFHID 715 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEeC
Confidence 456665443 333444431 1 1233664 34555 89999999999998544 3455555 4545687776
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHH----HhcCChhHHHHHHHHHH
Q 010988 412 VEVPLDFGEEEEIGVLVKKEDVVKAINM----LMNEGGERENRRKRARE 456 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~----lL~~~~~~~~~~~~a~~ 456 (496)
.. +.+++.++|.+ +++|++..+.+.+++++
T Consensus 716 P~---------------D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~ 749 (815)
T PLN00142 716 PY---------------HGDEAANKIADFFEKCKEDPSYWNKISDAGLQ 749 (815)
T ss_pred CC---------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 64 56677777655 45777555566655543
No 104
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.02 E-value=0.0068 Score=62.82 Aligned_cols=134 Identities=14% Similarity=0.179 Sum_probs=71.3
Q ss_pred eEEEEeeCCccCCChhhHHHHHHHHHh---CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEE-EeCcchh--hh
Q 010988 282 SVVYVCLGSICNLTSSQMIELGLGLEA---SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGIL-ILGWAPQ--VL 355 (496)
Q Consensus 282 ~vI~vs~GS~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~-v~~~~pq--~~ 355 (496)
..+++..|.... ..-+..+++|+.. .+.++++. |.+. . ...+. + ..+.... +.++. ...|-.. ..
T Consensus 282 ~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lviv-G~g~-~--~~~~~-l-~~l~~~~-~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 282 APLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLL-GTGD-P--ELEEA-F-RALAARY-PGKVGVQIGYDEALAHR 352 (466)
T ss_pred CcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEE-ecCc-H--HHHHH-H-HHHHHHC-CCcEEEEEeCCHHHHHH
Confidence 356667777653 2223444455443 35666655 4332 1 01110 1 1121221 44554 3455322 24
Q ss_pred hhcccccccccc---CCChh-hHHHHHHhCCcEeccCCcc--ccchhHHHHHHHhhceEEecccCCCCCCcccccccccC
Q 010988 356 ILSHPSIGGFLT---HCGWN-SSLEAISAGVPMITWPLFG--DQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVK 429 (496)
Q Consensus 356 ~l~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~ 429 (496)
++..+++ +|. +-|.| +..||+++|+|+|+....+ |.-.+...- +..+-|..++. -+
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~~---------------~d 414 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFDD---------------FN 414 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeCC---------------CC
Confidence 6777777 664 34555 7889999999999865432 211111111 12266777755 37
Q ss_pred HHHHHHHHHHHhc
Q 010988 430 KEDVVKAINMLMN 442 (496)
Q Consensus 430 ~~~l~~~i~~lL~ 442 (496)
+++|.++|.++++
T Consensus 415 ~~~la~~i~~~l~ 427 (466)
T PRK00654 415 AEDLLRALRRALE 427 (466)
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999886
No 105
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.02 E-value=0.01 Score=60.47 Aligned_cols=81 Identities=21% Similarity=0.091 Sum_probs=53.9
Q ss_pred CCcEEEeCcchhh---hhhccccccccccC---CCh-hhHHHHHHhCCcEeccCCccccchhHHHHHH---HhhceEEec
Q 010988 342 GRGILILGWAPQV---LILSHPSIGGFLTH---CGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQ---VLNIGVRIG 411 (496)
Q Consensus 342 ~~nv~v~~~~pq~---~~l~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e---~~G~g~~l~ 411 (496)
.++|...+++|+. .+|..+++ +|+- -|. .++.||+++|+|+|+.-..+.- .-+++ .-+.|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~----~~iv~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL----LDIVVPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc----hheeeccCCCCceEEe-
Confidence 5689999999865 46777777 5531 222 3889999999999976543211 11112 23355442
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHhcCCh
Q 010988 412 VEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGG 445 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~ 445 (496)
.+++++.++|.++++++.
T Consensus 377 ----------------~d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 ----------------STAEEYAEAIEKILSLSE 394 (419)
T ss_pred ----------------CCHHHHHHHHHHHHhCCH
Confidence 268899999999998764
No 106
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.96 E-value=0.0034 Score=62.80 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=71.6
Q ss_pred CCcEEEeCcchh-hhhhccccccccccC--CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCC
Q 010988 342 GRGILILGWAPQ-VLILSHPSIGGFLTH--CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDF 418 (496)
Q Consensus 342 ~~nv~v~~~~pq-~~~l~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~ 418 (496)
..+|.+.++.++ ..++..+++=++.++ |...++.||+++|+|+|+..... .....+ +.-..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC------
Confidence 567888877665 457888888555555 33458999999999999865431 133445 35566776654
Q ss_pred CcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 010988 419 GEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMA 461 (496)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~ 461 (496)
-+.+++.++|.++++|++..+.+.+++++.++.+
T Consensus 330 ---------~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 330 ---------GDIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred ---------CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 4789999999999998866677777777665443
No 107
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.96 E-value=0.014 Score=59.66 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=49.5
Q ss_pred EEeCcchhhhhhccccccccccC----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcc
Q 010988 346 LILGWAPQVLILSHPSIGGFLTH----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEE 421 (496)
Q Consensus 346 ~v~~~~pq~~~l~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~ 421 (496)
+..++.+..+++...++ ||.= +=-.++.||+++|+|+|+.-... + ..+ ++-+-|...
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~----------- 347 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY----------- 347 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec-----------
Confidence 35566666678888877 8866 33558899999999999976543 2 333 232333222
Q ss_pred cccccccCHHHHHHHHHHHhcCC
Q 010988 422 EEIGVLVKKEDVVKAINMLMNEG 444 (496)
Q Consensus 422 ~~~~~~~~~~~l~~~i~~lL~~~ 444 (496)
-+.+++.++|.++|+++
T Consensus 348 ------~~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 348 ------DDGKGFVRATLKALAEE 364 (462)
T ss_pred ------CCHHHHHHHHHHHHccC
Confidence 25678899999998754
No 108
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.89 E-value=0.0093 Score=62.06 Aligned_cols=154 Identities=13% Similarity=0.149 Sum_probs=89.4
Q ss_pred EEEEeeCCccCCChhhHHHHHHHHHh-----CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhh
Q 010988 283 VVYVCLGSICNLTSSQMIELGLGLEA-----SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLIL 357 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~~~~~a~~~-----~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l 357 (496)
.++++.|.... ...+..+++|+.. .+.+ +..+|.+. ..+. +.+-....-..++|...++.+...++
T Consensus 320 ~~il~vGrl~~--~Kg~~~li~A~~~l~~~~p~~~-l~i~G~G~-~~~~-----l~~~i~~~~l~~~V~f~G~~~~~~~~ 390 (500)
T TIGR02918 320 FSIITASRLAK--EKHIDWLVKAVVKAKKSVPELT-FDIYGEGG-EKQK-----LQKIINENQAQDYIHLKGHRNLSEVY 390 (500)
T ss_pred eEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeE-EEEEECch-hHHH-----HHHHHHHcCCCCeEEEcCCCCHHHHH
Confidence 45666777653 2334555565543 2333 33455554 2111 22111111125678888998888899
Q ss_pred cccccccccc---CCCh-hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEeccc-CCCCCCcccccccccC-HH
Q 010988 358 SHPSIGGFLT---HCGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVE-VPLDFGEEEEIGVLVK-KE 431 (496)
Q Consensus 358 ~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~-~~~~~~~~~~~~~~~~-~~ 431 (496)
..+++ +|. .-|. .++.||+++|+|+|+.... ..+...+ +.-.-|..++.. + . +..-+ .+
T Consensus 391 ~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI-~~g~nG~lv~~~~~------~---~d~~~~~~ 455 (500)
T TIGR02918 391 KDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFI-EDNKNGYLIPIDEE------E---DDEDQIIT 455 (500)
T ss_pred HhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHc-cCCCCEEEEeCCcc------c---cchhHHHH
Confidence 88888 664 3444 4899999999999996543 1233444 344457666532 0 0 00012 78
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 010988 432 DVVKAINMLMNEGGERENRRKRAREFQMMA 461 (496)
Q Consensus 432 ~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~ 461 (496)
+|.++|.++++ ++..+.|.+++.+.++.+
T Consensus 456 ~la~~I~~ll~-~~~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 456 ALAEKIVEYFN-SNDIDAFHEYSYQIAEGF 484 (500)
T ss_pred HHHHHHHHHhC-hHHHHHHHHHHHHHHHhc
Confidence 89999999995 545666777777655443
No 109
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.83 E-value=0.00022 Score=62.92 Aligned_cols=147 Identities=22% Similarity=0.285 Sum_probs=91.6
Q ss_pred CCeEEEEeeCCccCCChhhHHHHHHHHHhC----CCCe-EEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchh-
Q 010988 280 PNSVVYVCLGSICNLTSSQMIELGLGLEAS----KKPF-IWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQ- 353 (496)
Q Consensus 280 ~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~----~~~~-i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq- 353 (496)
+++.+++..|.... ...+..+++++..+ ...+ ++.+|... . ... +-..........++.+.+++++
T Consensus 13 ~~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~--~--~~~--~~~~~~~~~~~~~i~~~~~~~~~ 84 (172)
T PF00534_consen 13 DKKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE--Y--KKE--LKNLIEKLNLKENIIFLGYVPDD 84 (172)
T ss_dssp TTSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCC--H--HHH--HHHHHHHTTCGTTEEEEESHSHH
T ss_pred CCCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEcccc--c--ccc--ccccccccccccccccccccccc
Confidence 44577777887754 23344455555432 2333 33444232 1 111 1111112223568999999972
Q ss_pred --hhhhccccccccccC----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccc
Q 010988 354 --VLILSHPSIGGFLTH----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVL 427 (496)
Q Consensus 354 --~~~l~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~ 427 (496)
..++..+++ +|+. |...++.||+++|+|+|+ .|...+...+ +..+.|..++.
T Consensus 85 ~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~-~~~~~g~~~~~--------------- 142 (172)
T PF00534_consen 85 ELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEII-NDGVNGFLFDP--------------- 142 (172)
T ss_dssp HHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHS-GTTTSEEEEST---------------
T ss_pred cccccccccee--ccccccccccccccccccccccceee----ccccCCceee-ccccceEEeCC---------------
Confidence 457778777 7766 566799999999999997 3455566666 46666877755
Q ss_pred cCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010988 428 VKKEDVVKAINMLMNEGGERENRRKRARE 456 (496)
Q Consensus 428 ~~~~~l~~~i~~lL~~~~~~~~~~~~a~~ 456 (496)
.+.+++.++|.++++|+++.+.+.+++++
T Consensus 143 ~~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 143 NDIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 38999999999999988667777777765
No 110
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.82 E-value=0.02 Score=59.43 Aligned_cols=83 Identities=13% Similarity=0.084 Sum_probs=51.6
Q ss_pred CCcEEEeCcchhh---hhhcccccccccc---CCChh-hHHHHHHhCCcEeccCCcc--ccchhHHHHHHHhhceEEecc
Q 010988 342 GRGILILGWAPQV---LILSHPSIGGFLT---HCGWN-SSLEAISAGVPMITWPLFG--DQFCNEKLIVQVLNIGVRIGV 412 (496)
Q Consensus 342 ~~nv~v~~~~pq~---~~l~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~r~~e~~G~g~~l~~ 412 (496)
+.++.+....+.. .++..+++ +|. +-|.| +.+||+++|+|+|+-...+ |.-.+...- ..-+.|...+.
T Consensus 345 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~-~~~~~G~l~~~ 421 (473)
T TIGR02095 345 PGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPE-AESGTGFLFEE 421 (473)
T ss_pred CCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCC-CCCCceEEeCC
Confidence 4567665555543 36667776 663 23444 7789999999999866532 211111100 02266777654
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHhc
Q 010988 413 EVPLDFGEEEEIGVLVKKEDVVKAINMLMN 442 (496)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~ 442 (496)
.+++++.++|.+++.
T Consensus 422 ---------------~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 422 ---------------YDPGALLAALSRALR 436 (473)
T ss_pred ---------------CCHHHHHHHHHHHHH
Confidence 478899999999886
No 111
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.81 E-value=0.00072 Score=68.73 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=91.5
Q ss_pred eEEEEeeCCccCCChhhHHHHHHHHHhC-----CCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhh-
Q 010988 282 SVVYVCLGSICNLTSSQMIELGLGLEAS-----KKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVL- 355 (496)
Q Consensus 282 ~vI~vs~GS~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~- 355 (496)
+..+++.|..... ..+..+++|+... +.++.|.+-+....... +-+-........+|...+|+++.+
T Consensus 230 ~~~il~~Grl~~~--Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~-----l~~~~~~~~~~~~V~f~G~v~~~e~ 302 (407)
T cd04946 230 TLRIVSCSYLVPV--KRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDT-----LKELAESKPENISVNFTGELSNSEV 302 (407)
T ss_pred CEEEEEeeccccc--cCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHH-----HHHHHHhcCCCceEEEecCCChHHH
Confidence 3566777777542 2234444554432 34666654333301111 111111111245788999999764
Q ss_pred --hhccccccccccCCC----hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccC
Q 010988 356 --ILSHPSIGGFLTHCG----WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVK 429 (496)
Q Consensus 356 --~l~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~ 429 (496)
++..++++++|...- -++++||+++|+|+|+-.. ......+ ++.+.|..+... .+
T Consensus 303 ~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i-~~~~~G~l~~~~--------------~~ 363 (407)
T cd04946 303 YKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIV-DNGGNGLLLSKD--------------PT 363 (407)
T ss_pred HHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHh-cCCCcEEEeCCC--------------CC
Confidence 455555555765442 4579999999999998543 3455566 465578777553 57
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 010988 430 KEDVVKAINMLMNEGGERENRRKRAREFQM 459 (496)
Q Consensus 430 ~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~ 459 (496)
.+++.++|.++++|++.++.+++++++.-+
T Consensus 364 ~~~la~~I~~ll~~~~~~~~m~~~ar~~~~ 393 (407)
T cd04946 364 PNELVSSLSKFIDNEEEYQTMREKAREKWE 393 (407)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 899999999999988666666666655543
No 112
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.77 E-value=0.055 Score=54.27 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=52.8
Q ss_pred CCcEEEeCcchhhh---hhccccccccc------cCCCh-hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEec
Q 010988 342 GRGILILGWAPQVL---ILSHPSIGGFL------THCGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIG 411 (496)
Q Consensus 342 ~~nv~v~~~~pq~~---~l~~~~~~~~I------~HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~ 411 (496)
.+||...+++|+.+ .+..+++.++- +.++. +.+.|++++|+|+|..++ ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 57999999998655 57777773332 22333 358999999999998753 2223 2333 33332
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHhcCC
Q 010988 412 VEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEG 444 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~ 444 (496)
. -+.+++.++|.++|.++
T Consensus 324 ~---------------~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A---------------DDPEEFVAAIEKALLED 341 (373)
T ss_pred C---------------CCHHHHHHHHHHHHhcC
Confidence 2 37899999999987654
No 113
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.75 E-value=0.0005 Score=69.38 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=87.7
Q ss_pred CCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHH-HhCCCcEEEeCcchhhhhh
Q 010988 279 PPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEE-RVKGRGILILGWAPQVLIL 357 (496)
Q Consensus 279 ~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~nv~v~~~~pq~~~l 357 (496)
+++.++|.+|......+++.+..-.+.+++.+.-.+|...... .. ... +-..+.. ...++.+.+.++.|+.+-|
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~-~~--~~~--l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA-SG--EAR--LRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST-TH--HHH--HHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH-HH--HHH--HHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 3456999999999999999999888888888888888887665 21 111 2222221 1135678888887765544
Q ss_pred cc-ccccccc---cCCChhhHHHHHHhCCcEeccCCcc-ccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHH
Q 010988 358 SH-PSIGGFL---THCGWNSSLEAISAGVPMITWPLFG-DQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKED 432 (496)
Q Consensus 358 ~~-~~~~~~I---~HGG~gs~~eal~~GvP~v~~P~~~-DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~ 432 (496)
.. ..+++++ ..+|..|++|||+.|||+|.+|--. =...-+..+ +.+|+...+ ..+.++
T Consensus 357 ~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElI----------------A~s~~e 419 (468)
T PF13844_consen 357 RRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELI----------------ADSEEE 419 (468)
T ss_dssp HHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB-----------------SSHHH
T ss_pred HHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhc----------------CCCHHH
Confidence 32 2233343 5678899999999999999999533 233345666 588887654 245666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 010988 433 VVKAINMLMNEGGERENRRKRAR 455 (496)
Q Consensus 433 l~~~i~~lL~~~~~~~~~~~~a~ 455 (496)
-.+.-.++-+|.++.+.+|++.+
T Consensus 420 Yv~~Av~La~D~~~l~~lR~~Lr 442 (468)
T PF13844_consen 420 YVEIAVRLATDPERLRALRAKLR 442 (468)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666677777755555554443
No 114
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.70 E-value=0.055 Score=56.21 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=50.8
Q ss_pred CCcEEEeCcchhh---hhhccccccccccC---CCh-hhHHHHHHhCCcEeccCCcc--ccchhHHHHHHHhhceEEecc
Q 010988 342 GRGILILGWAPQV---LILSHPSIGGFLTH---CGW-NSSLEAISAGVPMITWPLFG--DQFCNEKLIVQVLNIGVRIGV 412 (496)
Q Consensus 342 ~~nv~v~~~~pq~---~~l~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~r~~e~~G~g~~l~~ 412 (496)
+.|+.+....++. .++..+++ ++.- -|. .+.+||+++|+|+|+....+ |.-.+.... ...|.|...+.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC
Confidence 5677654333332 35666676 6642 233 36789999999999766532 222121111 13347877755
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHhc
Q 010988 413 EVPLDFGEEEEIGVLVKKEDVVKAINMLMN 442 (496)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~ 442 (496)
.+.+++.++|.++++
T Consensus 427 ---------------~~~~~l~~~i~~~l~ 441 (476)
T cd03791 427 ---------------YNADALLAALRRALA 441 (476)
T ss_pred ---------------CCHHHHHHHHHHHHH
Confidence 368899999999886
No 115
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.67 E-value=0.015 Score=60.44 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=67.3
Q ss_pred CCcEEEeCcchhhhhhccccccccccC----CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHh------hceEEec
Q 010988 342 GRGILILGWAPQVLILSHPSIGGFLTH----CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVL------NIGVRIG 411 (496)
Q Consensus 342 ~~nv~v~~~~pq~~~l~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~------G~g~~l~ 411 (496)
.+||...+......++..+++ +|.- |--+++.||+++|+|+|+- |.......+ +.. ..|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC
Confidence 578988886666778887777 6533 3345899999999999994 444444555 342 2676665
Q ss_pred ccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 412 VEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
. .+.+++.++|.++++|+..++.+.+++++..
T Consensus 426 ~---------------~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v 457 (475)
T cd03813 426 P---------------ADPEALARAILRLLKDPELRRAMGEAGRKRV 457 (475)
T ss_pred C---------------CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 5 4789999999999998866666666655433
No 116
>PLN02316 synthase/transferase
Probab=97.61 E-value=0.19 Score=56.10 Aligned_cols=115 Identities=15% Similarity=0.035 Sum_probs=64.5
Q ss_pred CCcEEEeCcchhh---hhhcccccccccc---CCChh-hHHHHHHhCCcEeccCCcc--ccchhH----HHH--HHHhhc
Q 010988 342 GRGILILGWAPQV---LILSHPSIGGFLT---HCGWN-SSLEAISAGVPMITWPLFG--DQFCNE----KLI--VQVLNI 406 (496)
Q Consensus 342 ~~nv~v~~~~pq~---~~l~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na----~r~--~e~~G~ 406 (496)
+++|.+....+.. .++..+++ |+. +=|.| +.+||+++|+|.|+-...+ |.-... .+. ...-+-
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 4566655444432 46666666 774 23333 7889999999888765432 221111 110 001134
Q ss_pred eEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 010988 407 GVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLI 479 (496)
Q Consensus 407 g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 479 (496)
|...+. .+++.|..+|.++|.+ |......++...+++|++.=|-...+++.+
T Consensus 977 Gflf~~---------------~d~~aLa~AL~raL~~------~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~ 1028 (1036)
T PLN02316 977 GFSFDG---------------ADAAGVDYALNRAISA------WYDGRDWFNSLCKRVMEQDWSWNRPALDYM 1028 (1036)
T ss_pred eEEeCC---------------CCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 666544 5888999999999973 333444455555655555444444444443
No 117
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.00047 Score=56.03 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=71.7
Q ss_pred EEEeeCCccCCChhhHH--HHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchh-hhhhccc
Q 010988 284 VYVCLGSICNLTSSQMI--ELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQ-VLILSHP 360 (496)
Q Consensus 284 I~vs~GS~~~~~~~~~~--~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq-~~~l~~~ 360 (496)
||||-||....=.+... ++.+-.+....++|..+|++. + .| .....++-.++.+- ..+...+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d--~-------kp------vagl~v~~F~~~~kiQsli~da 66 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD--I-------KP------VAGLRVYGFDKEEKIQSLIHDA 66 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC--c-------cc------ccccEEEeechHHHHHHHhhcc
Confidence 78999998441111111 122222334568899999876 1 22 00223444455553 4455555
Q ss_pred cccccccCCChhhHHHHHHhCCcEeccCCcc--------ccchhHHHHHHHhhceEEecc
Q 010988 361 SIGGFLTHCGWNSSLEAISAGVPMITWPLFG--------DQFCNEKLIVQVLNIGVRIGV 412 (496)
Q Consensus 361 ~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~r~~e~~G~g~~l~~ 412 (496)
++ +|+|+|.||+..++.-++|.|++|-.. .|-.-|..++ +.+.=+...+
T Consensus 67 rI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~sp 123 (161)
T COG5017 67 RI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSP 123 (161)
T ss_pred eE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcC
Confidence 55 999999999999999999999999643 4777788886 7776655543
No 118
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.38 E-value=0.034 Score=50.67 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=36.6
Q ss_pred CCcEEEeCcchh-h---hhhccccccccccCCC----hhhHHHHHHhCCcEeccCCcccc
Q 010988 342 GRGILILGWAPQ-V---LILSHPSIGGFLTHCG----WNSSLEAISAGVPMITWPLFGDQ 393 (496)
Q Consensus 342 ~~nv~v~~~~pq-~---~~l~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ 393 (496)
..|+.+.++++. . .++..+++ +|+-.. .+++.||+++|+|+|+-+....+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 568888888632 2 23333666 777776 68999999999999998876543
No 119
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.20 E-value=0.018 Score=57.87 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=58.9
Q ss_pred CCcEEEeCcchhhh---hhccccccccccC----CCh-hhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEeccc
Q 010988 342 GRGILILGWAPQVL---ILSHPSIGGFLTH----CGW-NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVE 413 (496)
Q Consensus 342 ~~nv~v~~~~pq~~---~l~~~~~~~~I~H----GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~ 413 (496)
..++.+.+++|+.+ ++..+++ +|.- .|. .++.||+++|+|+|+.... .+...+ ++-..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEeCC
Confidence 46888889998654 5777777 6642 443 4778999999999997653 244445 354567645332
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHhcCC
Q 010988 414 VPLDFGEEEEIGVLVKKEDVVKAINMLMNEG 444 (496)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~ 444 (496)
.+.+++.++|.++++|+
T Consensus 329 --------------~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 329 --------------MTSDSIISDINRTLADP 345 (380)
T ss_pred --------------CCHHHHHHHHHHHHcCH
Confidence 57899999999999987
No 120
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.18 E-value=0.34 Score=49.24 Aligned_cols=179 Identities=11% Similarity=0.089 Sum_probs=97.7
Q ss_pred cccCCCCCCeEEEEeeCCccCC------C-h---hhHHHHHHHHHhCCCCeEEEEeCCCC---CchhhhhhhhhHHHHHH
Q 010988 273 NWLDSWPPNSVVYVCLGSICNL------T-S---SQMIELGLGLEASKKPFIWVIRGGNN---TSKEIQEWLLEEKFEER 339 (496)
Q Consensus 273 ~~l~~~~~~~vI~vs~GS~~~~------~-~---~~~~~~~~a~~~~~~~~i~~~~~~~~---~~~~~~~~~lp~~~~~~ 339 (496)
.|+...+.+++|-||.-..... . . +.+..+++.+...++++++.-..... ..++.. .-..+.+.
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~---~~~~l~~~ 302 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRM---VALNLRQH 302 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHH---HHHHHHHh
Confidence 4554333455888886644311 1 1 22334455554458887765422100 001111 11223333
Q ss_pred hC-CCcEE--EeCcchh--hhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEE-eccc
Q 010988 340 VK-GRGIL--ILGWAPQ--VLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVR-IGVE 413 (496)
Q Consensus 340 ~~-~~nv~--v~~~~pq--~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~-l~~~ 413 (496)
+. ++++. ...+-|. ..+++++++ +|..= +=++.-|+..|||.+.+++. +-...-+ +.+|.... .+.+
T Consensus 303 ~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y~---~K~~~~~-~~lg~~~~~~~~~ 375 (426)
T PRK10017 303 VSDPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINYE---HKSAGIM-QQLGLPEMAIDIR 375 (426)
T ss_pred cccccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeeeh---HHHHHHH-HHcCCccEEechh
Confidence 32 33332 3233343 367878776 77532 22556688999999999993 3344445 57888866 5555
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhc
Q 010988 414 VPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGE-RENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIMH 484 (496)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~-~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 484 (496)
.++.++|.+.+.++++|.++ ++.+++++.++++.. ...+.++|..+-+
T Consensus 376 -------------~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~~~----------~~~~~~~~~~~~~ 424 (426)
T PRK10017 376 -------------HLLDGSLQAMVADTLGQLPALNARLAEAVSRERQTG----------MQMVQSVLERIGE 424 (426)
T ss_pred -------------hCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhcc
Confidence 68999999999999987542 333444444444432 3556667666544
No 121
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.83 E-value=0.69 Score=49.26 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=52.1
Q ss_pred cEEEeCcchhh-hhhcccccccccc---CCC-hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCC
Q 010988 344 GILILGWAPQV-LILSHPSIGGFLT---HCG-WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDF 418 (496)
Q Consensus 344 nv~v~~~~pq~-~~l~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~ 418 (496)
++...++.++. +++..+++ ||. .=| -.++.||+++|+|+|+....+... + .. |.+..+ .
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll--~----- 665 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLT--Y----- 665 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEe--c-----
Confidence 46666777654 47877777 765 233 458889999999999987765321 3 12 222222 1
Q ss_pred CcccccccccCHHHHHHHHHHHhcCCh
Q 010988 419 GEEEEIGVLVKKEDVVKAINMLMNEGG 445 (496)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~i~~lL~~~~ 445 (496)
-+.+++.++|.++|+|+.
T Consensus 666 ---------~D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 666 ---------KTSEDFVAKVKEALANEP 683 (794)
T ss_pred ---------CCHHHHHHHHHHHHhCch
Confidence 368899999999999773
No 122
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.83 E-value=0.11 Score=50.96 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=39.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHH
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTTPANAARFKT 54 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~ 54 (496)
||+++-....|++.-+..+.++|+++ +.+|++++.+.+.+.++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 68899989999999999999999998 999999999987766553
No 123
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.82 E-value=0.61 Score=47.34 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhCCCCe-EEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcch-h---hhhhccccccccccC----
Q 010988 298 QMIELGLGLEASKKPF-IWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAP-Q---VLILSHPSIGGFLTH---- 368 (496)
Q Consensus 298 ~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p-q---~~~l~~~~~~~~I~H---- 368 (496)
.+..+++|+...+.++ ++.+|.+. . . ...++...++.. + ..++..+++ ||.-
T Consensus 257 g~~~li~A~~~l~~~~~L~ivG~g~-~--------~--------~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~E 317 (405)
T PRK10125 257 TDQQLVREMMALGDKIELHTFGKFS-P--------F--------TAGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVD 317 (405)
T ss_pred cHHHHHHHHHhCCCCeEEEEEcCCC-c--------c--------cccceEEecCcCCHHHHHHHHHhCCE--EEECCccc
Confidence 3567888888765444 44455433 0 0 034566556653 2 334555666 6652
Q ss_pred CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEeccc
Q 010988 369 CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVE 413 (496)
Q Consensus 369 GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~ 413 (496)
|--.++.||+++|+|+|+....+ ....+ +. +-|..++..
T Consensus 318 gfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~~ 356 (405)
T PRK10125 318 NYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSEE 356 (405)
T ss_pred cCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECCC
Confidence 33458899999999999987764 22233 23 468777654
No 124
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.78 E-value=0.0032 Score=52.91 Aligned_cols=80 Identities=26% Similarity=0.350 Sum_probs=50.3
Q ss_pred CCcEEEeCcchh-hhhhccccccccccC--CC-hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCC
Q 010988 342 GRGILILGWAPQ-VLILSHPSIGGFLTH--CG-WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLD 417 (496)
Q Consensus 342 ~~nv~v~~~~pq-~~~l~~~~~~~~I~H--GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~ 417 (496)
.+||.+.+|++. .+++..+++.+..+. .| -+++.|++++|+|+|+.+.. ..... +..+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~--~---- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV--A---- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE---T----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE--C----
Confidence 359999999974 457888888665442 23 47999999999999997761 22233 356778766 3
Q ss_pred CCcccccccccCHHHHHHHHHHHhcC
Q 010988 418 FGEEEEIGVLVKKEDVVKAINMLMNE 443 (496)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~i~~lL~~ 443 (496)
-+++++.++|.++++|
T Consensus 120 ----------~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 ----------NDPEELAEAIERLLND 135 (135)
T ss_dssp ----------T-HHHHHHHHHHHHH-
T ss_pred ----------CCHHHHHHHHHHHhcC
Confidence 4899999999999875
No 125
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.76 E-value=0.18 Score=50.15 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=71.5
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHhhhcCCCCeE-EEEeeCCccccCCC
Q 010988 5 GSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTTPANAARFKTVVARAMQSGLPLQ-LIEIQFPYQEAGIP 81 (496)
Q Consensus 5 ~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~i~~~~~~~~l~ 81 (496)
|+++++|||++-....|++.-...+.+.|+++ +.+|++++.+.+.+.++.. +.+. ++.++
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~--------- 63 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIK--------- 63 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEec---------
Confidence 45778999999999999999999999999998 9999999999877655431 2333 22222
Q ss_pred CCCCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEE
Q 010988 82 EGSENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRIS 146 (496)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~ 146 (496)
.. . . .....+. ... .+...++. .++|++|.-....-...++...|.+..+
T Consensus 64 ~~-~----~---~~~~~~~----~~~-~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 64 NK-K----A---GASEKIK----NFF-SLIKVLRA--NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred cc-c----c---cHHHHHH----HHH-HHHHHHhh--CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 00 0 0 0001111 111 22344455 6999999665444456677777887766
No 126
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.54 E-value=0.025 Score=47.74 Aligned_cols=100 Identities=15% Similarity=0.274 Sum_probs=64.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDML 90 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 90 (496)
||++++.....| ...+++.|.++||+|++++.......... ..+++++.++.+ ..
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~~---------~k----- 55 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPSP---------RK----- 55 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecCC---------CC-----
Confidence 577777666555 45779999999999999999654322221 236777776411 00
Q ss_pred CchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc---chHHHHHhcC-CCeEE
Q 010988 91 HSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP---WTVDTAARFN-IPRIS 146 (496)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~---~a~~~A~~lg-iP~v~ 146 (496)
.... . .. .. .+.++++. .+||+|.+-.... -+..+++..+ +|++.
T Consensus 56 ---~~~~-~---~~-~~-~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 56 ---SPLN-Y---IK-YF-RLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred ---ccHH-H---HH-HH-HHHHHhcc--CCCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 0011 1 11 12 67888888 7999998775543 2334567788 88886
No 127
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.10 E-value=0.052 Score=53.52 Aligned_cols=96 Identities=16% Similarity=0.282 Sum_probs=68.5
Q ss_pred CCcEEEeCcchhhhhh---ccccccccccC-------CCh------hhHHHHHHhCCcEeccCCccccchhHHHHHHHhh
Q 010988 342 GRGILILGWAPQVLIL---SHPSIGGFLTH-------CGW------NSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLN 405 (496)
Q Consensus 342 ~~nv~v~~~~pq~~~l---~~~~~~~~I~H-------GG~------gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G 405 (496)
.+||...+|+|+.++. .. +..++... +.+ +-+.+.+++|+|+|+. ++...+..+ ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 5699999999987653 33 33232221 111 1267889999999984 456778888 7999
Q ss_pred ceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 010988 406 IGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAK 462 (496)
Q Consensus 406 ~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~ 462 (496)
+|+.++ +.+++.+++.++. +++.+.|++|+++++..++
T Consensus 280 ~G~~v~-----------------~~~el~~~l~~~~--~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 280 LGFVVD-----------------SLEELPEIIDNIT--EEEYQEMVENVKKISKLLR 317 (333)
T ss_pred ceEEeC-----------------CHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHh
Confidence 999884 2357888888754 3456779999999998886
No 128
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.04 E-value=2.4 Score=44.37 Aligned_cols=116 Identities=20% Similarity=0.179 Sum_probs=71.8
Q ss_pred CCcEEEeCcchh-hhhhcccccccccc---CCC-hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCC
Q 010988 342 GRGILILGWAPQ-VLILSHPSIGGFLT---HCG-WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPL 416 (496)
Q Consensus 342 ~~nv~v~~~~pq-~~~l~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~ 416 (496)
.++|.+.+|... ..+|..+++ ||. .-| -+++.||+++|+|+|+... ..+...+ ++-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~--- 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA--- 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC---
Confidence 578999998754 447777777 875 345 4589999999999997655 3455666 465678777654
Q ss_pred CCCcccccccccCHHHHHHHH---HHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhcCC
Q 010988 417 DFGEEEEIGVLVKKEDVVKAI---NMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIMHQP 486 (496)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~i---~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 486 (496)
+.+.+.+++ .+++.+. ....+++...++.+++-=|....+++..+=+.+++
T Consensus 524 ------------D~~aLa~ai~lA~aL~~ll-------~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~~~ 577 (578)
T PRK15490 524 ------------QTVNLDQACRYAEKLVNLW-------RSRTGICQQTQSFLQERFTVEHMVGTFVKTIASQP 577 (578)
T ss_pred ------------ChhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC
Confidence 334444443 2233221 11223444444444555677777777777776665
No 129
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.15 Score=52.02 Aligned_cols=125 Identities=22% Similarity=0.329 Sum_probs=85.9
Q ss_pred CCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHh--CCCcEEEeCcchhh--
Q 010988 279 PPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERV--KGRGILILGWAPQV-- 354 (496)
Q Consensus 279 ~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~v~~~~pq~-- 354 (496)
+++.+||+||+-.....++.+..-++-++..+--++|..+++. +.+.... + +++.++. +.+.+++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~-~~~~~~~--l-~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD-DAEINAR--L-RDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC-cHHHHHH--H-HHHHHHcCCChhheeecCCCCCHHH
Confidence 4567999999999999999999888888888888999998865 3221111 1 1222222 25566666666643
Q ss_pred -hhhcccccccccc---CCChhhHHHHHHhCCcEeccCCccccch--hHHHHHHHhhceEEec
Q 010988 355 -LILSHPSIGGFLT---HCGWNSSLEAISAGVPMITWPLFGDQFC--NEKLIVQVLNIGVRIG 411 (496)
Q Consensus 355 -~~l~~~~~~~~I~---HGG~gs~~eal~~GvP~v~~P~~~DQ~~--na~r~~e~~G~g~~l~ 411 (496)
+-+..+++ |.. =||.-|..|+|..|||||..+ ++|+. |+.-++..+|+-..+-
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA 561 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVA 561 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhc
Confidence 34444554 654 699999999999999999876 66664 5555545666665553
No 130
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.86 E-value=1.1 Score=44.25 Aligned_cols=106 Identities=11% Similarity=0.009 Sum_probs=68.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHhhhcCCCCeE-EEEeeCCccccCCCCCCCcc
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTTPANAARFKTVVARAMQSGLPLQ-LIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~i~~~~~~~~l~~~~~~~ 87 (496)
|||++-....|++.-+..+.+.|+++ +.+|++++.+.+.+.++.. +.+. ++.++ .....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~---------~~~~~- 62 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLD---------RKKAK- 62 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeC---------hhhhc-
Confidence 68899989999999999999999997 8999999999877655432 2343 23322 00000
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEE
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISF 147 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~ 147 (496)
.....+. ... .+...++. .++|++|.-........++...|.|..+-
T Consensus 63 ------~~~~~~~----~~~-~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 63 ------AGERKLA----NQF-HLIKVLRA--NRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred ------chHHHHH----HHH-HHHHHHHh--CCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 0001111 111 22344555 69999996655556677888889997763
No 131
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.80 E-value=0.013 Score=46.04 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=45.8
Q ss_pred hhhhccccCCCCCCeEEEEeeCCccCC---C--hhhHHHHHHHHHhCCCCeEEEEeCCC
Q 010988 268 VSECLNWLDSWPPNSVVYVCLGSICNL---T--SSQMIELGLGLEASKKPFIWVIRGGN 321 (496)
Q Consensus 268 ~~~~~~~l~~~~~~~vI~vs~GS~~~~---~--~~~~~~~~~a~~~~~~~~i~~~~~~~ 321 (496)
+..+..|+...+.++.|+||+||.... . ...+..+++|++.+|..+|.+++...
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 566778999999999999999999863 2 24788899999999999999988765
No 132
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.96 E-value=0.32 Score=50.07 Aligned_cols=127 Identities=19% Similarity=0.300 Sum_probs=82.1
Q ss_pred CCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCch-hhhhhhhhHHHHHHhCCCcEEEeCcchhhh--
Q 010988 279 PPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSK-EIQEWLLEEKFEERVKGRGILILGWAPQVL-- 355 (496)
Q Consensus 279 ~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~-~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~-- 355 (496)
++..+||++|--.-..+|+.++.-++-+.+.+.-++|.++... ..+ .+..| . +.+ ...++.|+..+-++-.+
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa-~ge~rf~ty-~-~~~--Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA-VGEQRFRTY-A-EQL--GLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccc-cchHHHHHH-H-HHh--CCCccceeeccccchHHHH
Confidence 3456999999888889999999888888888889999998875 322 12221 0 111 11256666555544322
Q ss_pred ---hhccccccccccCCChhhHHHHHHhCCcEeccCCccccchh-HHHHHHHhhceEEecc
Q 010988 356 ---ILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCN-EKLIVQVLNIGVRIGV 412 (496)
Q Consensus 356 ---~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~n-a~r~~e~~G~g~~l~~ 412 (496)
.|..-.++-+.+. |..|.++.|+.|||||.+|.-.--... +-.+ -.+|+|..+-+
T Consensus 831 rr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll-~~~Gl~hliak 889 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLL-TALGLGHLIAK 889 (966)
T ss_pred HhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHH-HHcccHHHHhh
Confidence 2333333334554 678899999999999999985443343 3345 37888875533
No 133
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.92 E-value=0.023 Score=48.68 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCCCchhhHHHHHHHHH
Q 010988 25 PMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLHSTDLLFNFFKSLT 104 (496)
Q Consensus 25 p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 104 (496)
-+..|+++|.++||+|+++++.......+ ....++.++.++.+... .... .....
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~---~~~~~-------- 60 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE-------EEEDGVRVHRLPLPRRP-------WPLR---LLRFL-------- 60 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S-------EEETTEEEEEE--S-SS-------SGGG---HCCHH--------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc-------cccCCceEEeccCCccc-------hhhh---hHHHH--------
Confidence 46789999999999999999765443211 01235777777633221 0000 00111
Q ss_pred hhhHHHHHHH--HhcCCCCeEEEEcCCCc-chHHHHH-hcCCCeEEE
Q 010988 105 LLQLPLENLL--KELAPKPSCIVSDMCYP-WTVDTAA-RFNIPRISF 147 (496)
Q Consensus 105 ~~~~~l~~ll--~~~~~~pDlVI~D~~~~-~a~~~A~-~lgiP~v~~ 147 (496)
..+.+++ +. .+||+|.+..... ....+++ ..++|++.-
T Consensus 61 ---~~~~~~l~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~ 102 (160)
T PF13579_consen 61 ---RRLRRLLAARR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVT 102 (160)
T ss_dssp ---HHHHHHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE
T ss_pred ---HHHHHHHhhhc--cCCeEEEecccchhHHHHHHHHccCCcEEEE
Confidence 2233343 44 7999999875322 3334445 789999983
No 134
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.83 E-value=0.24 Score=38.27 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=51.9
Q ss_pred CCChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhH
Q 010988 368 HCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGER 447 (496)
Q Consensus 368 HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~ 447 (496)
+|-..-+.|++++|+|+|.-.. ..... ...-|...-.. -+.+++.++|..+++|+..+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~----~~~~~~~~~~~--------------~~~~el~~~i~~ll~~~~~~ 66 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLRE----IFEDGEHIITY--------------NDPEELAEKIEYLLENPEER 66 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHH----HcCCCCeEEEE--------------CCHHHHHHHHHHHHCCHHHH
Confidence 5556689999999999998766 12222 22223223222 28899999999999998655
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 010988 448 ENRRKRAREFQMMAKRATEETGSSSLMIKLLI 479 (496)
Q Consensus 448 ~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 479 (496)
+.+++++++.- .+.-+....+++++
T Consensus 67 ~~ia~~a~~~v-------~~~~t~~~~~~~il 91 (92)
T PF13524_consen 67 RRIAKNARERV-------LKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHHHH-------HHhCCHHHHHHHHH
Confidence 54444444333 33445556666554
No 135
>PRK14098 glycogen synthase; Provisional
Probab=94.65 E-value=0.69 Score=48.18 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=52.1
Q ss_pred CCcEEEeCcchhh---hhhccccccccccCC---Chh-hHHHHHHhCCcEeccCCcc--ccchhHHHHHHHhhceEEecc
Q 010988 342 GRGILILGWAPQV---LILSHPSIGGFLTHC---GWN-SSLEAISAGVPMITWPLFG--DQFCNEKLIVQVLNIGVRIGV 412 (496)
Q Consensus 342 ~~nv~v~~~~pq~---~~l~~~~~~~~I~HG---G~g-s~~eal~~GvP~v~~P~~~--DQ~~na~r~~e~~G~g~~l~~ 412 (496)
+.+|.+..+++.. .+++.+++ ++.-. |.| +.+||+++|+|.|+....+ |.-.+ .. ++-+-|...+.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~~ 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFHD 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeCC
Confidence 5688888888764 46777777 66432 333 6779999999888876533 22111 11 12355766644
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHHHh
Q 010988 413 EVPLDFGEEEEIGVLVKKEDVVKAINMLM 441 (496)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lL 441 (496)
.+++.|.++|.+++
T Consensus 436 ---------------~d~~~la~ai~~~l 449 (489)
T PRK14098 436 ---------------YTPEALVAKLGEAL 449 (489)
T ss_pred ---------------CCHHHHHHHHHHHH
Confidence 47899999999876
No 136
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.52 E-value=4.8 Score=39.51 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=66.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHhhhcCCCCeEE-EEeeCCccccCCCCCCCcc
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTTPANAARFKTVVARAMQSGLPLQL-IEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~i~~~~~~~~l~~~~~~~ 87 (496)
||+++-....|++.-...+.+.|++. +.+|++++.+.+...++.. +.+.- +.++. ..+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~~-------~~~---- 61 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMPL-------GHG---- 61 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecCC-------ccc----
Confidence 68999989999999999999999998 9999999988766554432 22322 11110 000
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEE
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRIS 146 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~ 146 (496)
...+. ....+.+.++. .++|++|.-....-...++...|+|.-+
T Consensus 62 --------~~~~~-----~~~~~~~~lr~--~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 62 --------ALELT-----ERRRLGRSLRE--ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred --------chhhh-----HHHHHHHHHhh--cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 00000 01123344555 5999999876666666677778888765
No 137
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.52 E-value=3 Score=39.78 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=38.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHH
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTTPANAARFKT 54 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~ 54 (496)
||+++-..+.|++.-+..+.++|+++ +-+|++++.+.+.+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 68899999999999999999999998 489999999987766554
No 138
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=94.07 E-value=6.3 Score=38.46 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=38.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhH
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTTPANAARF 52 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~ 52 (496)
|||+++-....|++.-...+.+.|+++ +.+||+++.+.+...+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 599999999999999999999999998 9999999998765544
No 139
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.93 E-value=6.2 Score=38.82 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=69.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSEN 86 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~ 86 (496)
||||+++-....|++.-.+.+-+.|+++ +.++++++.+.+.+.++.. +.+.-+-+ .....
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~----------~~~~~ 62 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVII----------IDKKK 62 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhcc----------ccccc
Confidence 5799999999999999999999999999 6999999999776654431 11221111 00000
Q ss_pred ccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEE
Q 010988 87 FDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRIS 146 (496)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~ 146 (496)
. . ..+ .-...+.+.++. .++|+||.=.-.+=...++...++|.-.
T Consensus 63 ~------~--~~~-----~~~~~l~~~lr~--~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 63 K------G--LGL-----KERLALLRTLRK--ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred c------c--cch-----HHHHHHHHHhhc--cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 0 000 112344555666 6899999877666666677788888877
No 140
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.68 E-value=0.73 Score=40.27 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=55.2
Q ss_pred hCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCCCchhhHHHHHHHHHhhhHHHHHHH
Q 010988 35 QNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLHSTDLLFNFFKSLTLLQLPLENLL 114 (496)
Q Consensus 35 ~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 114 (496)
++||+|++++........ .+++...+..+ .+..... ......+..-..........+.++.
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~-------~~~~~~~-~~~~~~~e~~~~rg~av~~a~~~L~ 61 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPP-------RGPTPGT-HPYVRDFEAAVLRGQAVARAARQLR 61 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCC-------CCCCCCC-CcccccHHHHHHHHHHHHHHHHHHH
Confidence 579999999965433211 26777666421 1111100 0011112222222233455555555
Q ss_pred HhcCCCCeEEEEcCCCcchHHHHHhc-CCCeEEEecc
Q 010988 115 KELAPKPSCIVSDMCYPWTVDTAARF-NIPRISFHGF 150 (496)
Q Consensus 115 ~~~~~~pDlVI~D~~~~~a~~~A~~l-giP~v~~~~~ 150 (496)
+. +..||+||+-.-+..++-+-..+ +.|.+.+.-.
T Consensus 62 ~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 62 AQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred Hc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 55 68899999997777778888888 9999986533
No 141
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.25 E-value=8 Score=36.96 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=71.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDML 90 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 90 (496)
||.|-- +-.-|+.=+-.|..+|.++||+|.+-+-... .+.+.+.. .||.+..+. -.+..
T Consensus 2 kVwiDI-~n~~hvhfFk~lI~elekkG~ev~iT~rd~~--~v~~LLd~-----ygf~~~~Ig--------k~g~~----- 60 (346)
T COG1817 2 KVWIDI-GNPPHVHFFKNLIWELEKKGHEVLITCRDFG--VVTELLDL-----YGFPYKSIG--------KHGGV----- 60 (346)
T ss_pred eEEEEc-CCcchhhHHHHHHHHHHhCCeEEEEEEeecC--cHHHHHHH-----hCCCeEeec--------ccCCc-----
Confidence 454433 3455777788999999999999987765422 12333222 267776663 11111
Q ss_pred CchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecch
Q 010988 91 HSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFS 151 (496)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~ 151 (496)
.+...+... ......|-++... .+||+.+. -.++-+..+|..+|+|.+.+.-..
T Consensus 61 ---tl~~Kl~~~-~eR~~~L~ki~~~--~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 61 ---TLKEKLLES-AERVYKLSKIIAE--FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred ---cHHHHHHHH-HHHHHHHHHHHhh--cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 111112121 1223456677777 89999999 578889999999999999975444
No 142
>PHA01630 putative group 1 glycosyl transferase
Probab=93.19 E-value=1 Score=44.24 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=27.7
Q ss_pred Ccchhhh---hhccccccccc--cC-CC-hhhHHHHHHhCCcEeccCCc
Q 010988 349 GWAPQVL---ILSHPSIGGFL--TH-CG-WNSSLEAISAGVPMITWPLF 390 (496)
Q Consensus 349 ~~~pq~~---~l~~~~~~~~I--~H-GG-~gs~~eal~~GvP~v~~P~~ 390 (496)
.++|+.+ ++..+++ +| ++ .| -.++.||+++|+|+|+.-..
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 3466443 5777777 65 33 33 44889999999999997654
No 143
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.04 E-value=1.2 Score=39.07 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=61.1
Q ss_pred cCCCccCHHHHHHHHHHH-HhC-CCeEEEEeCCcchhh--HHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCCC
Q 010988 16 PFLAQGHMIPMIDIGRLL-AQN-GAAITIVTTPANAAR--FKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLH 91 (496)
Q Consensus 16 ~~~~~GHi~p~l~LA~~L-~~r-GH~Vt~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 91 (496)
..++.||+.-|+.|.+.+ .++ .++..+++..+.... +++..... ....++..+|.... ..
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~---~~~~~~~~~~r~r~-------------v~ 67 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS---SKRHKILEIPRARE-------------VG 67 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc---cccceeeccceEEE-------------ec
Confidence 347899999999999999 444 555555555443322 22221111 11112333321100 00
Q ss_pred chhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc--chHHHHHhc------CCCeEEE
Q 010988 92 STDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP--WTVDTAARF------NIPRISF 147 (496)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~--~a~~~A~~l------giP~v~~ 147 (496)
.............+...+.-+++. +||+||+..... ....+|..+ |.+.|.+
T Consensus 68 -q~~~~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 68 -QSYLTSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred -hhhHhhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 012233333444445555555655 899999996444 556678888 8888874
No 144
>PHA01633 putative glycosyl transferase group 1
Probab=92.89 E-value=3.3 Score=40.69 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=53.6
Q ss_pred CCcEEEe---Ccchhh---hhhccccccccccC---CCh-hhHHHHHHhCCcEeccCC------cccc------chhHHH
Q 010988 342 GRGILIL---GWAPQV---LILSHPSIGGFLTH---CGW-NSSLEAISAGVPMITWPL------FGDQ------FCNEKL 399 (496)
Q Consensus 342 ~~nv~v~---~~~pq~---~~l~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~r 399 (496)
+++|... +++++. .++..+++ ||.= -|. .++.||+++|+|+|+--. .+|+ .++..-
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 5678876 455543 46667776 7753 344 478899999999998633 2332 333333
Q ss_pred HHH-HhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcC
Q 010988 400 IVQ-VLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNE 443 (496)
Q Consensus 400 ~~e-~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~ 443 (496)
.++ ..|.|...+ ..+++++.++|.+++..
T Consensus 278 ~~~~~~g~g~~~~---------------~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKEHGQKWKIH---------------KFQIEDMANAIILAFEL 307 (335)
T ss_pred hcCcccCceeeec---------------CCCHHHHHHHHHHHHhc
Confidence 311 234554443 36999999999998654
No 145
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=92.76 E-value=0.55 Score=39.52 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=47.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEe
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEI 71 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i 71 (496)
|++.||++.+.++.+|-.-..-++..|.++|++|+++......+.+.+..... +..++.+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~-----~~d~V~l 60 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET-----DADAILV 60 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-----CCCEEEE
Confidence 57789999999999999999999999999999999998876555555544332 4555554
No 146
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.13 E-value=1.3 Score=45.51 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=68.0
Q ss_pred EEeCcchhhh---hhcccccccccc---CCChh-hHHHHHHhCCc----EeccCCccccchhHHHHHHHhhceEEecccC
Q 010988 346 LILGWAPQVL---ILSHPSIGGFLT---HCGWN-SSLEAISAGVP----MITWPLFGDQFCNEKLIVQVLNIGVRIGVEV 414 (496)
Q Consensus 346 ~v~~~~pq~~---~l~~~~~~~~I~---HGG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~ 414 (496)
++...+|+.+ ++..+++ +|. +=|.| ++.||+++|+| +|+--+.+ .+..+ +-|+.+++
T Consensus 339 ~l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP-- 406 (456)
T TIGR02400 339 YLNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNP-- 406 (456)
T ss_pred EEcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECC--
Confidence 3445566654 4566666 775 44655 77899999999 55544432 22223 34666655
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh
Q 010988 415 PLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIM 483 (496)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 483 (496)
.+.+.+.++|.++|+++.+ +.+++.+++++... .-+...-+++++.++.
T Consensus 407 -------------~d~~~lA~aI~~aL~~~~~--er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 -------------YDIDGMADAIARALTMPLE--EREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred -------------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 4789999999999986522 44555555555543 2467778888888764
No 147
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=90.12 E-value=3.8 Score=42.97 Aligned_cols=91 Identities=13% Similarity=0.190 Sum_probs=62.8
Q ss_pred CcEEEeCcchh---hhhhccccccccccCC---ChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCC
Q 010988 343 RGILILGWAPQ---VLILSHPSIGGFLTHC---GWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPL 416 (496)
Q Consensus 343 ~nv~v~~~~pq---~~~l~~~~~~~~I~HG---G~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~ 416 (496)
..|.+.++.+. ..++.++.+ +|.=+ |.++..||+.+|+|+| .+....-| +...=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 57778887772 346666666 88766 7789999999999999 33344455 355556555 3
Q ss_pred CCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 010988 417 DFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMM 460 (496)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~ 460 (496)
+..+|.++|..+|.+.+.-..+...+-+.+..
T Consensus 474 ------------d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~ 505 (519)
T TIGR03713 474 ------------DISELLKALDYYLDNLKNWNYSLAYSIKLIDD 505 (519)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 56789999999999875444455555554444
No 148
>PLN02939 transferase, transferring glycosyl groups
Probab=89.28 E-value=13 Score=41.58 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=51.7
Q ss_pred CCcEEEeCcchhh---hhhccccccccccC---CCh-hhHHHHHHhCCcEeccCCcc--ccchh--HHHHHHHhhceEEe
Q 010988 342 GRGILILGWAPQV---LILSHPSIGGFLTH---CGW-NSSLEAISAGVPMITWPLFG--DQFCN--EKLIVQVLNIGVRI 410 (496)
Q Consensus 342 ~~nv~v~~~~pq~---~~l~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~--DQ~~n--a~r~~e~~G~g~~l 410 (496)
.++|.+..+.+.. .++..+++ ||.- =|. .+.+||+++|+|.|+....+ |--.+ ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4578887777754 46777776 7742 233 37899999999998876543 21111 11110122446555
Q ss_pred cccCCCCCCcccccccccCHHHHHHHHHHHhc
Q 010988 411 GVEVPLDFGEEEEIGVLVKKEDVVKAINMLMN 442 (496)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~ 442 (496)
+. .+++.|.++|.+++.
T Consensus 914 ~~---------------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT---------------PDEQGLNSALERAFN 930 (977)
T ss_pred cC---------------CCHHHHHHHHHHHHH
Confidence 43 477888888888764
No 149
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=88.89 E-value=12 Score=38.29 Aligned_cols=125 Identities=12% Similarity=0.087 Sum_probs=79.1
Q ss_pred CCeEEEEeeCCccCCChhhHHHHHHHHHh-CCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCc-ch--hhh
Q 010988 280 PNSVVYVCLGSICNLTSSQMIELGLGLEA-SKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGW-AP--QVL 355 (496)
Q Consensus 280 ~~~vI~vs~GS~~~~~~~~~~~~~~a~~~-~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~-~p--q~~ 355 (496)
++.++++| +...+..+....++ ++.+|=...+..- .+.+.+ + . .-+|+++.+- .+ ...
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~--s~kL~~------L-~--~y~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM--SSKLMS------L-D--KYDNVKLYPNITTQKIQE 343 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc--cHHHHH------H-H--hcCCcEEECCcChHHHHH
Confidence 44577776 25556666666666 5666644333331 112222 2 1 1366665444 66 356
Q ss_pred hhccccccccccCCC--hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHH
Q 010988 356 ILSHPSIGGFLTHCG--WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 433 (496)
Q Consensus 356 ~l~~~~~~~~I~HGG--~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 433 (496)
++..|++-+-|+||+ ..++.||+.+|+|++..=.... +..-+ .. |-.... -+.+++
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~~---g~l~~~---------------~~~~~m 401 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-AS---ENIFEH---------------NEVDQL 401 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-cC---CceecC---------------CCHHHH
Confidence 999999999999977 5589999999999998764422 22223 12 433433 478999
Q ss_pred HHHHHHHhcCC
Q 010988 434 VKAINMLMNEG 444 (496)
Q Consensus 434 ~~~i~~lL~~~ 444 (496)
.++|.++|+++
T Consensus 402 ~~~i~~lL~d~ 412 (438)
T TIGR02919 402 ISKLKDLLNDP 412 (438)
T ss_pred HHHHHHHhcCH
Confidence 99999999987
No 150
>PRK14099 glycogen synthase; Provisional
Probab=88.76 E-value=13 Score=38.63 Aligned_cols=39 Identities=5% Similarity=-0.026 Sum_probs=29.8
Q ss_pred CCCCEEEEEcC--------CCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 7 SQQPHFVLFPF--------LAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 7 ~~~~~il~~~~--------~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
|+.|||++++. ++.|++ +-+|.++|+++||+|.++.+..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADV--AGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHHCCCcEEEEeCCC
Confidence 46789999984 233443 5678899999999999998853
No 151
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=88.52 E-value=4.9 Score=39.15 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=34.9
Q ss_pred CCEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010988 9 QPHFVLFPF-LAQGHMIPMIDIGRLLAQNGAAITIVTTPANAA 50 (496)
Q Consensus 9 ~~~il~~~~-~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (496)
++||+|++. ++-|-..-.-++|-.|++.|.+|.++++++..+
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 468988887 679999999999999999999887777766544
No 152
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.45 E-value=3.1 Score=35.79 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=36.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
..+|||++...|+-|-..-.+.|++.|.++|++|-=+.++.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 45789999999999999999999999999999998666654
No 153
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=88.19 E-value=1.3 Score=38.17 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=23.0
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 20 QGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 20 ~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
.|=-.-+..|+++|+++||+|+++++..
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 5666678999999999999999998874
No 154
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.78 E-value=2.9 Score=39.54 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=52.0
Q ss_pred EeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHHHH--HhhceEEecccCCCCCCccccc
Q 010988 347 ILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQ--VLNIGVRIGVEVPLDFGEEEEI 424 (496)
Q Consensus 347 v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e--~~G~g~~l~~~~~~~~~~~~~~ 424 (496)
+..|-...++|.++++ +|--.|- .+-+++--|||+|.+|-.+-|+.-.-...+ -+|+.+.+-..
T Consensus 299 ~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~----------- 364 (412)
T COG4370 299 WLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP----------- 364 (412)
T ss_pred EEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC-----------
Confidence 3345555666666666 4433332 123467789999999999999986433322 34555555433
Q ss_pred ccccCHHHHHHHHHHHhcCChhHHHHHHH
Q 010988 425 GVLVKKEDVVKAINMLMNEGGERENRRKR 453 (496)
Q Consensus 425 ~~~~~~~~l~~~i~~lL~~~~~~~~~~~~ 453 (496)
.+..-....+++|.|+.+.+.+|.|
T Consensus 365 ----~aq~a~~~~q~ll~dp~r~~air~n 389 (412)
T COG4370 365 ----EAQAAAQAVQELLGDPQRLTAIRHN 389 (412)
T ss_pred ----chhhHHHHHHHHhcChHHHHHHHhc
Confidence 2222233344499999666666543
No 155
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=86.61 E-value=2.4 Score=41.04 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=34.3
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010988 10 PHFVLFPF-LAQGHMIPMIDIGRLLAQNGAAITIVTTPANAA 50 (496)
Q Consensus 10 ~~il~~~~-~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (496)
||++|+.. |+-|-..-..++|-.++++|++|-++++++..+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 57777776 679999999999999999999999999887665
No 156
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=86.54 E-value=2.5 Score=34.45 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=37.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
||++.+.++..|.....-++..|.++|++|+++......+.+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~ 45 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEA 45 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 588999999999999999999999999999888765444344443
No 157
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=86.38 E-value=19 Score=35.13 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=61.8
Q ss_pred CCCcEE-EeCcch---hhhhhccccccccccC--CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccC
Q 010988 341 KGRGIL-ILGWAP---QVLILSHPSIGGFLTH--CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEV 414 (496)
Q Consensus 341 ~~~nv~-v~~~~p---q~~~l~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~ 414 (496)
..+|+. +.+++| +.++|..|++.+|.+. =|+|+++-.++.|+|+++- .+...-.-+ ++.|+=+--..+
T Consensus 243 ~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l-~~~~ipVlf~~d- 316 (360)
T PF07429_consen 243 GAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDL-KEQGIPVLFYGD- 316 (360)
T ss_pred CccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHH-HhCCCeEEeccc-
Confidence 346775 467888 5679999999877775 5999999999999999863 333344455 356666555444
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHhc
Q 010988 415 PLDFGEEEEIGVLVKKEDVVKAINMLMN 442 (496)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~i~~lL~ 442 (496)
.++...|+++=+++..
T Consensus 317 ------------~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ------------ELDEALVREAQRQLAN 332 (360)
T ss_pred ------------cCCHHHHHHHHHHHhh
Confidence 6999999999887764
No 158
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=86.08 E-value=2.3 Score=44.02 Aligned_cols=106 Identities=16% Similarity=0.223 Sum_probs=61.4
Q ss_pred EEeCcchhhh---hhcccccccccc---CCChh-hHHHHHHhCCc---EeccCCccccchhHHHHHHHhhceEEecccCC
Q 010988 346 LILGWAPQVL---ILSHPSIGGFLT---HCGWN-SSLEAISAGVP---MITWPLFGDQFCNEKLIVQVLNIGVRIGVEVP 415 (496)
Q Consensus 346 ~v~~~~pq~~---~l~~~~~~~~I~---HGG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~ 415 (496)
+..+++++.+ ++..+++ +|. +-|+| ++.||+++|+| +|++.-... + . +...-|+.++.
T Consensus 344 ~~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~--~-~~~~~g~lv~p--- 411 (460)
T cd03788 344 YLYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----A--A-EELSGALLVNP--- 411 (460)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----c--h-hhcCCCEEECC---
Confidence 3446777654 5667776 663 45655 67899999999 333332111 0 1 11123666655
Q ss_pred CCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 010988 416 LDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDI 482 (496)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 482 (496)
.+.+++.++|.++|+++.+ ..++..++.++... .=+...-++++++++
T Consensus 412 ------------~d~~~la~ai~~~l~~~~~--e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ------------YDIDEVADAIHRALTMPLE--ERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ------------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 4789999999999987632 22222222232222 235667777777765
No 159
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.06 E-value=35 Score=33.24 Aligned_cols=125 Identities=13% Similarity=-0.034 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcc
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 87 (496)
++.|+.++..+-.||-=.|.-=|..|++.|.+|.++........- +.. ..++++++.++-.+.....|.-..
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e-~l~-----~hprI~ih~m~~l~~~~~~p~~~~-- 82 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLE-ELL-----NHPRIRIHGMPNLPFLQGGPRVLF-- 82 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChH-HHh-----cCCceEEEeCCCCcccCCCchhhh--
Confidence 567888888899999999999999999999999999765443221 111 246899999873332222221110
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcC-CCcchHHHHHhc----CCCeEEEecchH
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDM-CYPWTVDTAARF----NIPRISFHGFSC 152 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~-~~~~a~~~A~~l----giP~v~~~~~~~ 152 (496)
-..+.++.... -+..+.-. .++|.++.-+ -+.....+|..+ |..+++=|....
T Consensus 83 ------l~lKvf~Qfl~----Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~ 140 (444)
T KOG2941|consen 83 ------LPLKVFWQFLS----LLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYG 140 (444)
T ss_pred ------hHHHHHHHHHH----HHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhH
Confidence 11222222222 22233333 6899998763 344555555443 666676444433
No 160
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=84.17 E-value=6.4 Score=35.70 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=34.6
Q ss_pred CCEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010988 9 QPHFVLFPFL--AQGHMIPMIDIGRLLAQNGAAITIVTTPANA 49 (496)
Q Consensus 9 ~~~il~~~~~--~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (496)
|.+|++++++ +-|-..-..+|+..|+++|++|.++-.....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGL 43 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGL 43 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCc
Confidence 3488888875 6999999999999999999999999766443
No 161
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=84.00 E-value=9.3 Score=37.78 Aligned_cols=103 Identities=12% Similarity=0.004 Sum_probs=68.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEE-eeCCccccCCCCCCCc
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTTPANAARFKTVVARAMQSGLPLQLIE-IQFPYQEAGIPEGSEN 86 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-i~~~~~~~~l~~~~~~ 86 (496)
|||+++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+.++.. +.+.-+- ++ .. ..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~---------~~-~~ 62 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMP---------LG-HG 62 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEecc---------cc-cc
Confidence 589999999999999999999999997 9999999998776655432 2333221 11 00 00
Q ss_pred ccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEE
Q 010988 87 FDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRIS 146 (496)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~ 146 (496)
...+.. ...+...++. .++|++|.=....-...++...|+|.-+
T Consensus 63 ---------~~~~~~-----~~~l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 63 ---------ALEIGE-----RRRLGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---------hhhhHH-----HHHHHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 000000 1123344555 6999999765555566777888888776
No 162
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.45 E-value=9.6 Score=35.87 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=55.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDM 89 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~ 89 (496)
|||+++...+. -..|++.|.++||+|+..+...+....-.. .....++. .. +
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~~~~-------~g~~~v~~-----------g~---l-- 52 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHLYPI-------HQALTVHT-----------GA---L-- 52 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCccccccc-------cCCceEEE-----------CC---C--
Confidence 47777664443 568999999999999988776543211000 00011100 00 0
Q ss_pred CCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcc------hHHHHHhcCCCeEEE
Q 010988 90 LHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPW------TVDTAARFNIPRISF 147 (496)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~------a~~~A~~lgiP~v~~ 147 (496)
-...+.++++. .++|+||--.+-++ +..+|+.+|||++.+
T Consensus 53 ----------------~~~~l~~~l~~--~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 53 ----------------DPQELREFLKR--HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ----------------CHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 02236677777 78998875544443 456889999999985
No 163
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=82.04 E-value=2.2 Score=35.43 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=36.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
|||++...++.+=+. ...+.++|.++|++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 588888878766666 999999999999999999999877776654
No 164
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=81.60 E-value=15 Score=32.45 Aligned_cols=107 Identities=16% Similarity=0.060 Sum_probs=55.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCe--EEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcc
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAA--ITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~--Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 87 (496)
|||+|+.+++. ..+..+.++|.+++|+ |.++.+............. .++....+... .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~-----~~~~~~~~~~~--------~---- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK-----NGIPAQVADEK--------N---- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH-----TTHHEEEHHGG--------G----
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc-----CCCCEEecccc--------C----
Confidence 68988876555 5567778899999998 5544443322221111110 12332222100 0
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc-chHHHHHhcCCCeEEEecc
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP-WTVDTAARFNIPRISFHGF 150 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~-~a~~~A~~lgiP~v~~~~~ 150 (496)
........+++.+.+++ .+||++|+-.+.. -...+.+.....++.++++
T Consensus 61 ------------~~~~~~~~~~~~~~l~~--~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 ------------FQPRSENDEELLELLES--LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ------------SSSHHHHHHHHHHHHHH--TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ------------CCchHhhhhHHHHHHHh--hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 00011234567778888 7999998875433 3444556666666765543
No 165
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=81.33 E-value=20 Score=32.38 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNG--AAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rG--H~Vt~~~~~ 46 (496)
||||++++.+..+- +.+|.+.+.+.+ ++|.++.+.
T Consensus 1 m~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEec
Confidence 57999999766433 446667776664 778876544
No 166
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=81.30 E-value=2.4 Score=34.65 Aligned_cols=38 Identities=3% Similarity=-0.138 Sum_probs=26.7
Q ss_pred CEEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 10 PHFVLFPFLAQG---HMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 10 ~~il~~~~~~~G---Hi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
|||+|+.-|-.+ .-.-.++++.+..+|||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 588888876543 34568899999999999999998764
No 167
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=81.13 E-value=48 Score=31.04 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=56.6
Q ss_pred EEEEeeCCccC--CChhhHH----HHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEE-----eCcc
Q 010988 283 VVYVCLGSICN--LTSSQMI----ELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILI-----LGWA 351 (496)
Q Consensus 283 vI~vs~GS~~~--~~~~~~~----~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v-----~~~~ 351 (496)
|.++-.|+..+ ..++... .+.+.++.-+..|+.+.+... +...+. .+........+++ .++=
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRT--p~~~~s-----~l~~~l~s~~~i~w~~~d~g~N 236 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRT--PDTVKS-----ILKNNLNSSPGIVWNNEDTGYN 236 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCC--cHHHHH-----HHHhccccCceeEeCCCCCCCC
Confidence 55555666655 3344333 244556667888888877663 222222 1111111122222 2455
Q ss_pred hhhhhhccccccccccCCChhhHHHHHHhCCcEecc
Q 010988 352 PQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITW 387 (496)
Q Consensus 352 pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 387 (496)
|+.+.|+.++. +++|---.|-.+||.+.|+|+.++
T Consensus 237 PY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 237 PYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred chHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 89999988887 345556678889999999998543
No 168
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=80.97 E-value=3.2 Score=37.18 Aligned_cols=45 Identities=9% Similarity=-0.057 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAAR 51 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (496)
++.+||++...++.|=+.-...+++.|.++||+|.++.++...+.
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~ 47 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTT 47 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHH
Confidence 456688877766655555479999999999999999999865543
No 169
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=80.34 E-value=5.6 Score=41.74 Aligned_cols=79 Identities=14% Similarity=0.068 Sum_probs=47.4
Q ss_pred hhhhhcccccccccc---CCChh-hHHHHHHhCCcEeccCCcc-ccchhHHHHHHHh-hceEEecccCCCCCCccccccc
Q 010988 353 QVLILSHPSIGGFLT---HCGWN-SSLEAISAGVPMITWPLFG-DQFCNEKLIVQVL-NIGVRIGVEVPLDFGEEEEIGV 426 (496)
Q Consensus 353 q~~~l~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~-DQ~~na~r~~e~~-G~g~~l~~~~~~~~~~~~~~~~ 426 (496)
..+++..|++ +|. +=|+| ++.||+++|+|+|.....+ .... ..+++.- ..|+.+.... ..+-
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~--------~~~~ 535 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRR--------FKSP 535 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCC--------ccch
Confidence 4566766777 555 45655 8999999999999977642 2221 2221111 2566665321 0011
Q ss_pred ccCHHHHHHHHHHHhcC
Q 010988 427 LVKKEDVVKAINMLMNE 443 (496)
Q Consensus 427 ~~~~~~l~~~i~~lL~~ 443 (496)
..+.++|.++|.++++.
T Consensus 536 ~e~v~~La~~m~~~~~~ 552 (590)
T cd03793 536 DESVQQLTQYMYEFCQL 552 (590)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 34678888889888854
No 170
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=79.81 E-value=7.5 Score=43.09 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=63.3
Q ss_pred hhhcccccccccc---CCChh-hHHHHHHhCCc---EeccCCccccchhHHHHHHHhh-ceEEecccCCCCCCccccccc
Q 010988 355 LILSHPSIGGFLT---HCGWN-SSLEAISAGVP---MITWPLFGDQFCNEKLIVQVLN-IGVRIGVEVPLDFGEEEEIGV 426 (496)
Q Consensus 355 ~~l~~~~~~~~I~---HGG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~r~~e~~G-~g~~l~~~~~~~~~~~~~~~~ 426 (496)
+++.-+++ ||. .-|+| +..|++++|+| +++++-. ...+. .+| -|+.+++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~----~l~~~allVnP-------------- 427 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQ----SLGAGALLVNP-------------- 427 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchh----hhcCCeEEECC--------------
Confidence 46666666 764 44777 67799999999 4444422 22222 233 4677766
Q ss_pred ccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhcCC
Q 010988 427 LVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIMHQP 486 (496)
Q Consensus 427 ~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 486 (496)
.+.+++.++|.++|+.+.+ +.+++.+++.+... .-+...-+++|++++.+..
T Consensus 428 -~D~~~lA~AI~~aL~m~~~--er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 428 -WNITEVSSAIKEALNMSDE--ERETRHRHNFQYVK-----THSAQKWADDFMSELNDII 479 (797)
T ss_pred -CCHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHHh
Confidence 4889999999999984321 23334444444443 2356677888888886654
No 171
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=78.64 E-value=61 Score=30.67 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=52.5
Q ss_pred CCcEEEeCcch---hhhhhccccccccccC---CChh-hHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccC
Q 010988 342 GRGILILGWAP---QVLILSHPSIGGFLTH---CGWN-SSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEV 414 (496)
Q Consensus 342 ~~nv~v~~~~p---q~~~l~~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~ 414 (496)
..++...+++| ...++..+++ ++.- .|.| ++.||+++|+|+|.-.. ......+ ...+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceE-ecCC-
Confidence 46788889888 3345666666 5555 3554 46999999999965443 3333333 2332465 4332
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHhcCC
Q 010988 415 PLDFGEEEEIGVLVKKEDVVKAINMLMNEG 444 (496)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~ 444 (496)
.+.+.+.+++..++++.
T Consensus 327 -------------~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 -------------GDVEELADALEQLLEDP 343 (381)
T ss_pred -------------CCHHHHHHHHHHHhcCH
Confidence 26889999999999875
No 172
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=77.62 E-value=12 Score=30.39 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=37.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVV 56 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (496)
.|+++.+.+..-|-.-+..|+..|.++||+|.++-.....+.+.+..
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~ 47 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEAL 47 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHH
Confidence 37899999999999999999999999999999986655444444443
No 173
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=77.32 E-value=26 Score=32.87 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCccCH-HHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 010988 8 QQPHFVLFPFLAQGHM-IPMIDIGRLLAQNGAAITIVTTPANAAR 51 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi-~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (496)
++||||+.- -.|-- --+..|+++|.+.| +|+++++...+.-
T Consensus 4 ~~M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 4 KKPHILVCN--DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSG 45 (257)
T ss_pred CCCEEEEEC--CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCC
Confidence 456888764 23333 34788899998888 7999998866553
No 174
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=75.53 E-value=12 Score=33.77 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=40.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVV 56 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (496)
+..||++.+.++..|-....-++..|.++|++|+++......+.+.+..
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~ 129 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAV 129 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 3679999999999999999999999999999999887664444444443
No 175
>PRK14098 glycogen synthase; Provisional
Probab=75.52 E-value=4.9 Score=41.92 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=31.8
Q ss_pred CCCCCCEEEEEcC--------CCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 5 GSSQQPHFVLFPF--------LAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 5 ~~~~~~~il~~~~--------~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
|+.+||||++++. ++.|++ +-+|.++|+++||+|.++.+..
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADF--MASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHH--HHHHHHHHHHCCCeEEEEcCCC
Confidence 4578899999984 233443 5678899999999999998853
No 176
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=75.48 E-value=37 Score=34.98 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=30.7
Q ss_pred CCCEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 8 QQPHFVLFPFL-AQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 8 ~~~~il~~~~~-~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
+|.+|+|.... +-|-..=...|++.|+++|++|..+-+.
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 34566666544 4889999999999999999999988553
No 177
>PRK12342 hypothetical protein; Provisional
Probab=75.22 E-value=47 Score=31.18 Aligned_cols=37 Identities=8% Similarity=-0.030 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCeEEEEcCCCc------chHHHHHhcCCCeEEEe
Q 010988 110 LENLLKELAPKPSCIVSDMCYP------WTVDTAARFNIPRISFH 148 (496)
Q Consensus 110 l~~ll~~~~~~pDlVI~D~~~~------~a~~~A~~lgiP~v~~~ 148 (496)
|-..++. ..||+||+...+. -++.+|+.+|+|++.+.
T Consensus 101 La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v 143 (254)
T PRK12342 101 LAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAV 143 (254)
T ss_pred HHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeE
Confidence 3344555 4699999864443 37889999999999854
No 178
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=74.85 E-value=13 Score=33.35 Aligned_cols=51 Identities=14% Similarity=-0.040 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHh
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVAR 58 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~ 58 (496)
+..||++.+.++..|-....-++.-|..+|++|+++....-.+.+.+.+..
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~ 133 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK 133 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999999999999999999887665555555443
No 179
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=73.86 E-value=32 Score=29.85 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=23.8
Q ss_pred ccccccccccCCChh------hHHHHHHhCCcEeccCC
Q 010988 358 SHPSIGGFLTHCGWN------SSLEAISAGVPMITWPL 389 (496)
Q Consensus 358 ~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 389 (496)
..+.+ +++|+|-| ++.+|...++|||++.-
T Consensus 62 g~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 62 GKLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 34555 88888855 78899999999999963
No 180
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=73.39 E-value=7.5 Score=36.36 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=57.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
|++|+++...+.| ..||+.|.++|+.|++.+...+.. .. ..+..+.. ..+
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~---------~~~~~v~~-----------G~l---- 51 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PA---------DLPGPVRV-----------GGF---- 51 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cc---------cCCceEEE-----------CCC----
Confidence 5688888876666 478999999999998877664332 00 00111111 000
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc------chHHHHHhcCCCeEEEe
Q 010988 89 MLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP------WTVDTAARFNIPRISFH 148 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~------~a~~~A~~lgiP~v~~~ 148 (496)
. -...+.+++++ .++++||=-.+-+ -+..+|+.+|||++.+-
T Consensus 52 --~--------------~~~~l~~~l~~--~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 52 --G--------------GAEGLAAYLRE--EGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred --C--------------CHHHHHHHHHH--CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 0 13456777777 7999988333333 34568899999999953
No 181
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.98 E-value=4.9 Score=35.32 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=24.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
|||.++.-. |++- ..|+++...|||+||-++-..
T Consensus 1 mKIaiIgAs--G~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGAS--GKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecC--chhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 588777643 3332 368999999999999988764
No 182
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=71.20 E-value=9.6 Score=35.69 Aligned_cols=93 Identities=12% Similarity=0.152 Sum_probs=56.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDM 89 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~ 89 (496)
|||+++...+-| ..|++.|.++|+ |++.+..++...+... ......+.. ..+
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~------~~~~~~v~~-----------G~l----- 52 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKP------ELPGLEVRV-----------GRL----- 52 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhcc------ccCCceEEE-----------CCC-----
Confidence 588888866666 479999999999 7766655443322210 000111100 000
Q ss_pred CCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc------chHHHHHhcCCCeEEE
Q 010988 90 LHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP------WTVDTAARFNIPRISF 147 (496)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~------~a~~~A~~lgiP~v~~ 147 (496)
. -...+.++++. .++++||==.+-+ -+..+|+.+|||++.+
T Consensus 53 -g--------------~~~~l~~~l~~--~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 53 -G--------------DEEGLAEFLRE--NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred -C--------------CHHHHHHHHHh--CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 0 13456677777 7999988333333 3456889999999985
No 183
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=70.58 E-value=26 Score=33.12 Aligned_cols=44 Identities=20% Similarity=0.186 Sum_probs=34.9
Q ss_pred CcEEEeCcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCC
Q 010988 343 RGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPL 389 (496)
Q Consensus 343 ~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~ 389 (496)
..+.+.+-.+-.+++.+++. +||-.+- .-.||+.+|+|++++..
T Consensus 183 ~~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 183 NVVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred CeEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 34556677888899999998 8886553 66799999999999764
No 184
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=69.97 E-value=13 Score=32.10 Aligned_cols=106 Identities=21% Similarity=0.292 Sum_probs=58.5
Q ss_pred EEEEcCCCccCHHH----HHHHHHHHHhC-CCeEEEEeCCc---chhhHHHHHHhhhcCCCCe-EEEEeeCCccccCCCC
Q 010988 12 FVLFPFLAQGHMIP----MIDIGRLLAQN-GAAITIVTTPA---NAARFKTVVARAMQSGLPL-QLIEIQFPYQEAGIPE 82 (496)
Q Consensus 12 il~~~~~~~GHi~p----~l~LA~~L~~r-GH~Vt~~~~~~---~~~~~~~~~~~~~~~~~~i-~~~~i~~~~~~~~l~~ 82 (496)
|+++.-...|.+++ ++..|++|++. |.+|+.++..+ ..+.+++.... .+. +.+.+..+...
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~-----~G~d~v~~~~~~~~~----- 71 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK-----YGADKVYHIDDPALA----- 71 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS-----TTESEEEEEE-GGGT-----
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh-----cCCcEEEEecCcccc-----
Confidence 45555444555555 78889999886 88988886653 22222222221 244 34444311100
Q ss_pred CCCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc---chHHHHHhcCCCeEE
Q 010988 83 GSENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP---WTVDTAARFNIPRIS 146 (496)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~---~a~~~A~~lgiP~v~ 146 (496)
.+ ..+.....+.++++. .+||+||+-.... .+..+|.++|.|++.
T Consensus 72 ~~-----------------~~~~~a~~l~~~~~~--~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 72 EY-----------------DPEAYADALAELIKE--EGPDLVLFGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp TC------------------HHHHHHHHHHHHHH--HT-SEEEEESSHHHHHHHHHHHHHHT-EEEE
T ss_pred cc-----------------CHHHHHHHHHHHHHh--cCCCEEEEcCcCCCCcHHHHHHHHhCCCccc
Confidence 00 111234455566666 6899999875444 567789999999998
No 185
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=69.85 E-value=6.3 Score=34.94 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKT 54 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (496)
|+||++...++.|=+. ...+.+.|.++|++|.++.++....++..
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 4578888777666555 89999999999999999999987776654
No 186
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=69.82 E-value=19 Score=29.43 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=37.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
||++.+.++..|..-..-++.-|...|++|++.....-.+.+...
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~ 45 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEA 45 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 688999999999999999999999999999999876444444333
No 187
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=69.24 E-value=49 Score=26.33 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=55.0
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCCCchhhHHHHH
Q 010988 21 GHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLHSTDLLFNFF 100 (496)
Q Consensus 21 GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 100 (496)
++-.-+..+++.|.+.|+++. +++.....+++. ++.+..+... ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~------~~------------------ 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKV------SE------------------ 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeec------CC------------------
Confidence 355678899999999999984 455555555543 5655444211 00
Q ss_pred HHHHhhhHHHHHHHHhcCCCCeEEEEcCC-------CcchHHHHHhcCCCeEE
Q 010988 101 KSLTLLQLPLENLLKELAPKPSCIVSDMC-------YPWTVDTAARFNIPRIS 146 (496)
Q Consensus 101 ~~~~~~~~~l~~ll~~~~~~pDlVI~D~~-------~~~a~~~A~~lgiP~v~ 146 (496)
-...+.+++++ .++|+||.-.. .+.....|-.+|||++.
T Consensus 55 -----~~~~i~~~i~~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -----GRPNIVDLIKN--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -----CchhHHHHHHc--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 12346677777 79999998532 23455678889999996
No 188
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=68.82 E-value=34 Score=27.98 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=16.4
Q ss_pred HHhhhHHHHHHHHhcCCCCeEEEEc
Q 010988 103 LTLLQLPLENLLKELAPKPSCIVSD 127 (496)
Q Consensus 103 ~~~~~~~l~~ll~~~~~~pDlVI~D 127 (496)
...+...+.+++++ .+||+|++-
T Consensus 85 ~~~~~~~l~~~i~~--~~p~~V~t~ 107 (128)
T PF02585_consen 85 WEELVRDLEDLIRE--FRPDVVFTP 107 (128)
T ss_dssp HHHHHHHHHHHHHH--H-ESEEEEE
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEC
Confidence 33456678888888 799999865
No 189
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=68.81 E-value=31 Score=33.04 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANA 49 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (496)
+...|.|.-.|+-|--.-.-.|+++|.++||+|.++..++..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 345678888899999999999999999999999999876544
No 190
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=68.75 E-value=9.1 Score=42.13 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=68.1
Q ss_pred EEEeCcchhhh---hhccccccccccC---CChh-hHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCC
Q 010988 345 ILILGWAPQVL---ILSHPSIGGFLTH---CGWN-SSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLD 417 (496)
Q Consensus 345 v~v~~~~pq~~---~l~~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~ 417 (496)
++..+++++.+ ++..+++ ++.- -|+| .+.|++++|+|-..+|+..+--.-+..+ .-|+.+++
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P----- 412 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP----- 412 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC-----
Confidence 34556777664 5556666 6653 3544 7789999977633333322221112222 23777765
Q ss_pred CCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhcCC
Q 010988 418 FGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIMHQP 486 (496)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 486 (496)
.+.+++.++|.++|+++.. +.+++.+++.+... .-+...-+++|++++.+..
T Consensus 413 ----------~d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 413 ----------NDIEGIAAAIKRALEMPEE--EQRERMQAMQERLR-----RYDVHKWASDFLDELREAA 464 (726)
T ss_pred ----------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHH
Confidence 4789999999999986522 22333333333332 3467788888888886654
No 191
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=68.38 E-value=13 Score=37.86 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
++||||++-.+++-| +|+..|++.++-..+++.+.
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pg 37 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPG 37 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECC
Confidence 468999999988777 78999999986655555553
No 192
>PRK06849 hypothetical protein; Provisional
Probab=68.38 E-value=44 Score=33.57 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
++++|++..... .-.+.+|+.|.++||+|+++....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467888875322 258899999999999999987764
No 193
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=68.24 E-value=6.3 Score=30.67 Aligned_cols=84 Identities=21% Similarity=0.257 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCCCchhhHHHHHHHHHh
Q 010988 26 MIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLHSTDLLFNFFKSLTL 105 (496)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (496)
++.+|+.|.+.||++. +++.....+++. ++....+-... +.++ ... .+.
T Consensus 2 ~~~~a~~l~~lG~~i~--AT~gTa~~L~~~---------Gi~~~~v~~~~---~~~~---~~~----g~~---------- 50 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIY--ATEGTAKFLKEH---------GIEVTEVVNKI---GEGE---SPD----GRV---------- 50 (95)
T ss_dssp HHHHHHHHHHTTSEEE--EEHHHHHHHHHT---------T--EEECCEEH---STG----GGT----HCH----------
T ss_pred HHHHHHHHHHCCCEEE--EChHHHHHHHHc---------CCCceeeeeec---ccCc---cCC----chh----------
Confidence 5789999999997764 555555556543 56643331000 0000 000 000
Q ss_pred hhHHHHHHHHhcCCCCeEEEEcCCCcc---------hHHHHHhcCCCeE
Q 010988 106 LQLPLENLLKELAPKPSCIVSDMCYPW---------TVDTAARFNIPRI 145 (496)
Q Consensus 106 ~~~~l~~ll~~~~~~pDlVI~D~~~~~---------a~~~A~~lgiP~v 145 (496)
.+.+++++ .+.|+||....... ...+|...+||++
T Consensus 51 ---~i~~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 ---QIMDLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---HHHHHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ---HHHHHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 67778888 89999998743331 1346677888876
No 194
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=68.05 E-value=8.7 Score=34.13 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=36.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhHHH
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQ-NGAAITIVTTPANAARFKT 54 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~~ 54 (496)
|+||++...++.| .+=...+.++|.+ .||+|.++.++...+++.+
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 4588887777766 5668999999999 5999999999987776654
No 195
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=67.53 E-value=7.4 Score=37.87 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=30.9
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 5 GSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 5 ~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
|.+.+|||+++-.++.| ..+|..|++.||+|+++....
T Consensus 1 ~~~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 45677899999877777 356788999999999998764
No 196
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=67.49 E-value=16 Score=31.81 Aligned_cols=43 Identities=33% Similarity=0.444 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEcCCCcchH-H-HH---Hhc-CCCeEEEec
Q 010988 105 LLQLPLENLLKELAPKPSCIVSDMCYPWTV-D-TA---ARF-NIPRISFHG 149 (496)
Q Consensus 105 ~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~-~-~A---~~l-giP~v~~~~ 149 (496)
...+.+.+++++ .+||+||+...+.... . .. ..+ ++|.+.+.|
T Consensus 76 ~~~~~l~~~l~~--~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 76 LFARRLIRLLRE--FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHhh--cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 345678889998 8999999997664333 1 11 224 578776543
No 197
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=67.37 E-value=41 Score=31.60 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=33.7
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 12 FVLFP-FLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 12 il~~~-~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
++++. -|+.|...-..++|..++++|++|.++..+.. +.+.+.
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~ 45 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDS 45 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHH
Confidence 44444 57799999999999999999999999987754 344444
No 198
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=67.32 E-value=19 Score=33.61 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=26.5
Q ss_pred CEEEEEcCCCccCHHH-HHHHHHHHHhCCCeEEEEeCCcchhh
Q 010988 10 PHFVLFPFLAQGHMIP-MIDIGRLLAQNGAAITIVTTPANAAR 51 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p-~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (496)
||||+.- -.|=..| +..|++.|. .+++|+++++...++-
T Consensus 1 mrILlTN--DDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg 40 (252)
T COG0496 1 MRILLTN--DDGIHAPGIRALARALR-EGADVTVVAPDREQSG 40 (252)
T ss_pred CeEEEec--CCccCCHHHHHHHHHHh-hCCCEEEEccCCCCcc
Confidence 3555542 2333333 677888888 9999999999876653
No 199
>PRK05973 replicative DNA helicase; Provisional
Probab=67.26 E-value=42 Score=31.14 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=37.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVA 57 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 57 (496)
+++..-|+.|-..-.+.++...+++|+.|.|++.+...+.+.....
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHH
Confidence 4566668899999999999999999999999998877665555543
No 200
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=67.13 E-value=39 Score=25.74 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=23.2
Q ss_pred HHHHHHhcCCCCeEEEEcCC---------CcchHHHHHhcCCCeE
Q 010988 110 LENLLKELAPKPSCIVSDMC---------YPWTVDTAARFNIPRI 145 (496)
Q Consensus 110 l~~ll~~~~~~pDlVI~D~~---------~~~a~~~A~~lgiP~v 145 (496)
+.++++. .++|+||.... ......+|-..+||++
T Consensus 47 i~~~i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 47 ILDLIKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHhcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 5667777 89999998532 1133446777888876
No 201
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=66.37 E-value=39 Score=34.12 Aligned_cols=51 Identities=8% Similarity=0.163 Sum_probs=42.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhh
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARA 59 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~ 59 (496)
+..|+++..=+.|-....--||+.|.++|+.|-+++.+.++..+.+.+...
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~L 150 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQL 150 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHH
Confidence 445666666789999999999999999999999999998887766665554
No 202
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=66.08 E-value=1.3e+02 Score=29.08 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=57.4
Q ss_pred CCcEE-EeCcch---hhhhhccccccccccC--CChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCC
Q 010988 342 GRGIL-ILGWAP---QVLILSHPSIGGFLTH--CGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVP 415 (496)
Q Consensus 342 ~~nv~-v~~~~p---q~~~l~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~ 415 (496)
++++. +.+++| +.++|.+|++..|+|+ =|+|+++-.++.|||+++-- +=+.+.. ++ +.|+-+-.+.+
T Consensus 205 ~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~-e~gv~Vlf~~d-- 277 (322)
T PRK02797 205 AENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LT-EQGLPVLFTGD-- 277 (322)
T ss_pred cccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HH-hCCCeEEecCC--
Confidence 36765 556676 6679999999888886 58999999999999998742 2233333 42 55666654555
Q ss_pred CCCCcccccccccCHHHHHHHHHHHh
Q 010988 416 LDFGEEEEIGVLVKKEDVVKAINMLM 441 (496)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~i~~lL 441 (496)
.++...+.++=+++.
T Consensus 278 -----------~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 -----------DLDEDIVREAQRQLA 292 (322)
T ss_pred -----------cccHHHHHHHHHHHH
Confidence 588887877755444
No 203
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=65.94 E-value=44 Score=31.12 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=37.2
Q ss_pred CCCCEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010988 7 SQQPHFVLFPF-LAQGHMIPMIDIGRLLAQNGAAITIVTTPANAA 50 (496)
Q Consensus 7 ~~~~~il~~~~-~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (496)
+...|-.|+.. ++-|-..-.-.||-.|+.-+|.|.++.+++.++
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHN 60 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHN 60 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccc
Confidence 34567777776 679999999999999999999999999887655
No 204
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=65.43 E-value=13 Score=38.27 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=48.8
Q ss_pred hHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHH
Q 010988 373 SSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRK 452 (496)
Q Consensus 373 s~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~ 452 (496)
++.||+++|.|+|+. ++..-+-.+ ++.--|...++. .-....+.+++.++..|++....+.+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp~-------------~e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDPG-------------QEAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCCc-------------hHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 678999999999985 444445555 355557666554 34455799999999999966655555
Q ss_pred H-HHHHHHHHH
Q 010988 453 R-AREFQMMAK 462 (496)
Q Consensus 453 ~-a~~l~~~~~ 462 (496)
+ -+++.+++.
T Consensus 443 ~G~~rV~e~fs 453 (495)
T KOG0853|consen 443 NGLKRVKEMFS 453 (495)
T ss_pred HHHHHHHHHHh
Confidence 4 344555444
No 205
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=65.41 E-value=28 Score=31.69 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=41.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVV 56 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (496)
+..||++.+.++..|-....-++..|..+|++|+++....-.+.+.+..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~ 135 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA 135 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH
Confidence 4679999999999999999999999999999999998765444454443
No 206
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=65.32 E-value=75 Score=28.49 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=33.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
|+|+-..+-|-..-...||..++.+|.+|.+++.+.++.-..+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQ 47 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQ 47 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHH
Confidence 45555567999999999999999999999999998775444333
No 207
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=64.70 E-value=18 Score=30.50 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
++++||++.+.+..||-.-.--+++.|+..|.+|.....-.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~ 50 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ 50 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC
Confidence 46899999999999999999999999999999999886543
No 208
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=64.15 E-value=66 Score=29.10 Aligned_cols=150 Identities=15% Similarity=0.085 Sum_probs=75.1
Q ss_pred CCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhcc
Q 010988 280 PNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSH 359 (496)
Q Consensus 280 ~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~ 359 (496)
.+.+++|..|.... .-++.|...+.++.++. ... . ++..+ .....++.+..--.+...+..
T Consensus 9 gk~vlVvGgG~va~-------rk~~~Ll~~ga~VtVvs-p~~-~-~~l~~---------l~~~~~i~~~~~~~~~~dl~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVAL-------RKARLLLKAGAQLRVIA-EEL-E-SELTL---------LAEQGGITWLARCFDADILEG 69 (205)
T ss_pred CCeEEEECcCHHHH-------HHHHHHHHCCCEEEEEc-CCC-C-HHHHH---------HHHcCCEEEEeCCCCHHHhCC
Confidence 35688888877642 22344445677766543 322 1 11211 112335554222223344555
Q ss_pred ccccccccCCChhhHH-----HHHHhCCcEe--ccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHH
Q 010988 360 PSIGGFLTHCGWNSSL-----EAISAGVPMI--TWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKED 432 (496)
Q Consensus 360 ~~~~~~I~HGG~gs~~-----eal~~GvP~v--~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~ 432 (496)
+.+ +|..-|...+. +|-..|+|+- --|-..| +..-..+ +.=++-+.+.++ ++++.+ +..
T Consensus 70 ~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~---------G~sP~l-a~~ 135 (205)
T TIGR01470 70 AFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSG---------GAAPVL-ARL 135 (205)
T ss_pred cEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECC---------CCCcHH-HHH
Confidence 555 88887876444 4445688883 3333333 2223333 232333344332 223333 455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 010988 433 VVKAINMLMNEGGERENRRKRAREFQMMAKRA 464 (496)
Q Consensus 433 l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a 464 (496)
|++.|.+++.+ + .+.+-+.+.+++..+++.
T Consensus 136 lr~~ie~~l~~-~-~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 136 LRERIETLLPP-S-LGDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHHHhcch-h-HHHHHHHHHHHHHHHHhh
Confidence 88888888852 2 245666666666666543
No 209
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=63.88 E-value=12 Score=33.70 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=28.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAAR 51 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (496)
||||+.-==+. +---+..|+++|.+.||+|+++++...+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 56776653332 334478899999877899999999876654
No 210
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=63.66 E-value=14 Score=27.65 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=29.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIV 43 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~ 43 (496)
.-++++..+...|......+|+.|++.|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567777788999999999999999999999855
No 211
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=63.35 E-value=35 Score=29.89 Aligned_cols=45 Identities=11% Similarity=-0.077 Sum_probs=36.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVV 56 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (496)
+++...|+.|=..=.+.++.+.++.|..|.|++.+.....+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHH
Confidence 466667889999999999999999999999999887666555543
No 212
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=63.21 E-value=38 Score=28.33 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=39.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
.+|++.+..+.+|-.----++..|.+.|++|+.+......+.+-+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 5899999999999999999999999999999999886554444444
No 213
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=62.77 E-value=1.5e+02 Score=28.72 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=41.5
Q ss_pred hhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccch----hHHHHHHHhhceEEecc
Q 010988 352 PQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFC----NEKLIVQVLNIGVRIGV 412 (496)
Q Consensus 352 pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~----na~r~~e~~G~g~~l~~ 412 (496)
|+...|+.++. ++||=-=.+-++||+..|+|+.++|.-. +.. -...+ ++.|+-...+.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECCC
Confidence 57788888886 5666666788899999999999999876 333 24445 35666655543
No 214
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=62.46 E-value=14 Score=34.60 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=25.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAAR 51 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (496)
||||+.-==+. |---+.+|+++|++ +|+|+++++...+.-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg 40 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSA 40 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 36665542221 22337788888864 689999999866553
No 215
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=61.87 E-value=15 Score=34.59 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKT 54 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (496)
...++|+..++.|-..=..+||.+|.++|+.|+|++.+.....++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 4578899989999999999999999988999999999976665544
No 216
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.09 E-value=31 Score=33.50 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=39.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVV 56 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (496)
--|+|+...+.|-....--||..|.+.|+.|.++..+-+++-..+.+
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL 186 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQL 186 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH
Confidence 34577778899999999999999999999999999998876554443
No 217
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=60.63 E-value=30 Score=32.03 Aligned_cols=99 Identities=12% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCeEEEEeeCCccC---CChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcch---h
Q 010988 280 PNSVVYVCLGSICN---LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAP---Q 353 (496)
Q Consensus 280 ~~~vI~vs~GS~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p---q 353 (496)
+++.|.+..|+... .+.+.+.++++.+.+.++++++ +++.. + ...+ .-+.+........+.+.+-.+ .
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl-~g~~~-~--~~~~--~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVL-LGGPE-E--QEKE--IADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE---SSH-H--HHHH--HHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEE-Eccch-H--HHHH--HHHHHHHhcccceEeecCCCCHHHH
Confidence 45678888887653 6788899999999887766544 44433 1 0111 111111111112344433333 3
Q ss_pred hhhhccccccccccCCChhhHHHHHHhCCcEecc
Q 010988 354 VLILSHPSIGGFLTHCGWNSSLEAISAGVPMITW 387 (496)
Q Consensus 354 ~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 387 (496)
..++.++++ +|+. -.|.+.=|.+.|+|+|++
T Consensus 178 ~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 568888888 8885 457889999999999988
No 218
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=60.44 E-value=1.1e+02 Score=26.40 Aligned_cols=40 Identities=28% Similarity=0.240 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhcCCCCeEEEEcCCCc---chHHHHHhcCCCeEEE
Q 010988 106 LQLPLENLLKELAPKPSCIVSDMCYP---WTVDTAARFNIPRISF 147 (496)
Q Consensus 106 ~~~~l~~ll~~~~~~pDlVI~D~~~~---~a~~~A~~lgiP~v~~ 147 (496)
..+.+.++++. .+||+|++-.... .+..+|.++|.|++.-
T Consensus 71 ~a~al~~~i~~--~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtd 113 (168)
T cd01715 71 YAPALVALAKK--EKPSHILAGATSFGKDLAPRVAAKLDVGLISD 113 (168)
T ss_pred HHHHHHHHHHh--cCCCEEEECCCccccchHHHHHHHhCCCceee
Confidence 34455666666 6899999775443 6788999999999983
No 219
>PRK06988 putative formyltransferase; Provisional
Probab=60.43 E-value=1e+02 Score=29.91 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
||||+|+..+.. .+...+.|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHNV-----GVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcHH-----HHHHHHHHHhCCCCEEEEEcC
Confidence 579999865542 355677788899998887765
No 220
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=60.28 E-value=63 Score=27.90 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=20.7
Q ss_pred cccCCChh------hHHHHHHhCCcEeccCCc
Q 010988 365 FLTHCGWN------SSLEAISAGVPMITWPLF 390 (496)
Q Consensus 365 ~I~HGG~g------s~~eal~~GvP~v~~P~~ 390 (496)
++++.|-| ++.+|...++|||++.-.
T Consensus 63 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~ 94 (162)
T cd07038 63 LVTTYGVGELSALNGIAGAYAEHVPVVHIVGA 94 (162)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 77776644 788999999999999643
No 221
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=59.95 E-value=55 Score=30.53 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=27.3
Q ss_pred CEEEEEcCCCccCHHH-HHHHHHHHHhCCCeEEEEeCCcchhhH
Q 010988 10 PHFVLFPFLAQGHMIP-MIDIGRLLAQNGAAITIVTTPANAARF 52 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p-~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (496)
||||+.- -.|-..| +.+|+++|.+.| +|+++++...+..+
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQRSGT 41 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCcccc
Confidence 3555432 3333333 778899999888 89999998766543
No 222
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=59.94 E-value=62 Score=29.16 Aligned_cols=152 Identities=9% Similarity=-0.020 Sum_probs=79.1
Q ss_pred ccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchh
Q 010988 274 WLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQ 353 (496)
Q Consensus 274 ~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq 353 (496)
|++-. .+.++.|+.|.++. ..++.|...+.++.++. ... .+.+........+........
T Consensus 5 ~l~l~-~k~vLVIGgG~va~-------~ka~~Ll~~ga~V~VIs-~~~-----------~~~l~~l~~~~~i~~~~~~~~ 64 (202)
T PRK06718 5 MIDLS-NKRVVIVGGGKVAG-------RRAITLLKYGAHIVVIS-PEL-----------TENLVKLVEEGKIRWKQKEFE 64 (202)
T ss_pred EEEcC-CCEEEEECCCHHHH-------HHHHHHHHCCCeEEEEc-CCC-----------CHHHHHHHhCCCEEEEecCCC
Confidence 34433 45688888887643 23344444566665543 322 112222222334554444444
Q ss_pred hhhhccccccccccCCChhhHHHHHH----hCCcEeccCCccccch-----hHHHHHHHhhceEEecccCCCCCCccccc
Q 010988 354 VLILSHPSIGGFLTHCGWNSSLEAIS----AGVPMITWPLFGDQFC-----NEKLIVQVLNIGVRIGVEVPLDFGEEEEI 424 (496)
Q Consensus 354 ~~~l~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~-----na~r~~e~~G~g~~l~~~~~~~~~~~~~~ 424 (496)
...+..+++ +|.--+.-.+.+.++ .++++-+ .|.+. .-..+ ++-++-+.+.++ ++
T Consensus 65 ~~~l~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~---------G~ 128 (202)
T PRK06718 65 PSDIVDAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTD---------GA 128 (202)
T ss_pred hhhcCCceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECC---------CC
Confidence 555666666 888777666655544 4555433 34322 22333 233344444332 22
Q ss_pred ccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 010988 425 GVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRA 464 (496)
Q Consensus 425 ~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a 464 (496)
++. -+..|++.|.+++ ++..+.+-+.+.+++..+++.
T Consensus 129 sP~-la~~lr~~ie~~~--~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 129 SPK-LAKKIRDELEALY--DESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred ChH-HHHHHHHHHHHHc--chhHHHHHHHHHHHHHHHHHh
Confidence 233 3455888888877 334556777777888777643
No 223
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=59.88 E-value=1.4e+02 Score=30.65 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEe
Q 010988 109 PLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFH 148 (496)
Q Consensus 109 ~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~ 148 (496)
++.+.++. .+||++|.... ...+|+++|||++.+.
T Consensus 368 e~~~~i~~--~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFT--EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhh--cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 45666666 68999999853 5678999999998743
No 224
>PRK14099 glycogen synthase; Provisional
Probab=59.87 E-value=15 Score=38.21 Aligned_cols=95 Identities=14% Similarity=0.239 Sum_probs=50.3
Q ss_pred CCcE-EEeCcchhhh-hh-cccccccccc---CCChh-hHHHHHHhCCcEeccCCcc--ccchhHHHHHHH--hhceEEe
Q 010988 342 GRGI-LILGWAPQVL-IL-SHPSIGGFLT---HCGWN-SSLEAISAGVPMITWPLFG--DQFCNEKLIVQV--LNIGVRI 410 (496)
Q Consensus 342 ~~nv-~v~~~~pq~~-~l-~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~r~~e~--~G~g~~l 410 (496)
+.++ ...+|-.... ++ ..+++ ||. +=|.| +.+||+++|+|.|+....+ |--.......+. -+-|...
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~ 426 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF 426 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe
Confidence 3454 4556633222 22 23444 774 45555 6679999998766654322 321111111001 1457666
Q ss_pred cccCCCCCCcccccccccCHHHHHHHHHH---HhcCChhHHHHHHH
Q 010988 411 GVEVPLDFGEEEEIGVLVKKEDVVKAINM---LMNEGGERENRRKR 453 (496)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---lL~~~~~~~~~~~~ 453 (496)
+. -++++|.++|.+ +++|+...+.+.++
T Consensus 427 ~~---------------~d~~~La~ai~~a~~l~~d~~~~~~l~~~ 457 (485)
T PRK14099 427 SP---------------VTADALAAALRKTAALFADPVAWRRLQRN 457 (485)
T ss_pred CC---------------CCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55 478899999987 56665333334433
No 225
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=59.46 E-value=1.3e+02 Score=26.81 Aligned_cols=104 Identities=9% Similarity=0.003 Sum_probs=52.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC--eEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcc
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGA--AITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH--~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 87 (496)
+||+++..+..+- +..+.+.+.+.++ +|.++.+............ ..++.++.++. ....+
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~-----~~gip~~~~~~--------~~~~~- 63 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAA-----QAGIPTFVLSL--------KDFPS- 63 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHH-----HcCCCEEEECc--------cccCc-
Confidence 4788888655443 4566777777665 6666544422111122211 12566655431 11100
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc-chHHHHHhcCCCeEEE
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP-WTVDTAARFNIPRISF 147 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~-~a~~~A~~lgiP~v~~ 147 (496)
......++.+++++ .++|++|+-.+.. -...+-..+..-++.+
T Consensus 64 ---------------~~~~~~~~~~~l~~--~~~D~iv~~~~~~il~~~~l~~~~~~~iNi 107 (190)
T TIGR00639 64 ---------------REAFDQAIIEELRA--HEVDLVVLAGFMRILGPTFLSRFAGRILNI 107 (190)
T ss_pred ---------------hhhhhHHHHHHHHh--cCCCEEEEeCcchhCCHHHHhhccCCEEEE
Confidence 11123456677777 7999998764432 3333344333334443
No 226
>PLN02470 acetolactate synthase
Probab=59.09 E-value=91 Score=33.37 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=53.3
Q ss_pred eeCCccCCChh--hHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEE--EeCcch--------hh
Q 010988 287 CLGSICNLTSS--QMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGIL--ILGWAP--------QV 354 (496)
Q Consensus 287 s~GS~~~~~~~--~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~--v~~~~p--------q~ 354 (496)
+|||....+.. .-..+++.|++.+.+.|+-+.+.. . .. +-+.+. ..+++. ....-- +.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~-~----~~--l~dal~---~~~~i~~i~~rhE~~A~~~Adgya 71 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGA-S----ME--IHQALT---RSNCIRNVLCRHEQGEVFAAEGYA 71 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcc-c----HH--HHHHHh---ccCCceEEEeccHHHHHHHHHHHH
Confidence 46776653322 245688888888999888887775 1 11 112221 122222 222211 11
Q ss_pred hhhccccccccccCCChh------hHHHHHHhCCcEeccCC
Q 010988 355 LILSHPSIGGFLTHCGWN------SSLEAISAGVPMITWPL 389 (496)
Q Consensus 355 ~~l~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 389 (496)
.+-.++.+ +++|.|-| ++.+|...++|||++.-
T Consensus 72 r~tg~~gv--~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 72 KASGKVGV--CIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred HHhCCCEE--EEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 22334444 88998855 88899999999999953
No 227
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=58.91 E-value=10 Score=33.67 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCCc
Q 010988 9 QPHFVLFPFLAQGHMIP------------MIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p------------~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
..||++...|+.-.+.| -..||+++..+|++||++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 45777777666655554 4689999999999999999884
No 228
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=58.50 E-value=1.4e+02 Score=28.08 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCCeEEEEcCCC------cchHHHHHhcCCCeEEEec
Q 010988 110 LENLLKELAPKPSCIVSDMCY------PWTVDTAARFNIPRISFHG 149 (496)
Q Consensus 110 l~~ll~~~~~~pDlVI~D~~~------~~a~~~A~~lgiP~v~~~~ 149 (496)
|-..++. ..||+||+...+ .-++.+|+.+|+|++++..
T Consensus 104 La~ai~~--~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 104 LAAAAQK--AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHHHHH--hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 3444555 469999976322 2567899999999998543
No 229
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=57.78 E-value=1.2e+02 Score=25.93 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=24.2
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEE
Q 010988 17 FLAQGHMIPMIDIGRLLAQNGAAITIV 43 (496)
Q Consensus 17 ~~~~GHi~p~l~LA~~L~~rGH~Vt~~ 43 (496)
.++-|-..=.+.|++.|+++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456888899999999999999999986
No 230
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=57.03 E-value=1.3e+02 Score=26.31 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCc---chHHHHHhcCCCeEE
Q 010988 107 QLPLENLLKELAPKPSCIVSDMCYP---WTVDTAARFNIPRIS 146 (496)
Q Consensus 107 ~~~l~~ll~~~~~~pDlVI~D~~~~---~a~~~A~~lgiP~v~ 146 (496)
.+.+.++++. .+||+|++-.... .+..+|.++|.|++.
T Consensus 80 a~~l~~~i~~--~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 80 AKALAALIKK--EKPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred HHHHHHHHHH--hCCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 3445556666 5799999875444 678899999999998
No 231
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=56.89 E-value=1.5e+02 Score=26.56 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
+.-.|.+++..+.|-....+.+|-+.+.+|++|.++-.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45679999999999999999999999999999999853
No 232
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.61 E-value=57 Score=29.67 Aligned_cols=107 Identities=15% Similarity=0.078 Sum_probs=57.9
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccC
Q 010988 11 HFVLFPF-LAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDM 89 (496)
Q Consensus 11 ~il~~~~-~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~ 89 (496)
.++++-. .+.|--.-.++++--+...||.|++++++.....+-+..... +..+.-+.+ .+.-.+-.
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl---~ydv~~~~l----------~G~l~~~~ 95 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESL---SYDVSDFLL----------SGRLLFFP 95 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhc---CCCchHHHh----------cceeEEEE
Confidence 3444443 468888889999999999999999999986544333333221 221111110 01000000
Q ss_pred CCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcch
Q 010988 90 LHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWT 133 (496)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a 133 (496)
.. ...........+.+-+.+.+..+. ++-|+||.|.+...+
T Consensus 96 ~~-~~~~~~~~~~~~~~L~~l~~~~k~--~~~dViIIDSls~~~ 136 (235)
T COG2874 96 VN-LEPVNWGRRSARKLLDLLLEFIKR--WEKDVIIIDSLSAFA 136 (235)
T ss_pred ec-ccccccChHHHHHHHHHHHhhHHh--hcCCEEEEecccHHh
Confidence 00 000111112233344556666666 799999999877643
No 233
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=56.05 E-value=86 Score=32.03 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEe
Q 010988 108 LPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFH 148 (496)
Q Consensus 108 ~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~ 148 (496)
.++++++++ .+||+||.+... ..+|+++|+|++.++
T Consensus 361 ~el~~~i~~--~~pdliig~~~~---~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKE--EPVDLLIGNSHG---RYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhc--cCCCEEEECchh---HHHHHhcCCCEEEec
Confidence 355667777 689999999643 578889999998743
No 234
>PRK09739 hypothetical protein; Provisional
Probab=55.96 E-value=28 Score=31.28 Aligned_cols=39 Identities=10% Similarity=-0.028 Sum_probs=24.8
Q ss_pred CCCCEEEEEcC-CCc-cCHHH-HHHHHHHHHhCCCeEEEEeC
Q 010988 7 SQQPHFVLFPF-LAQ-GHMIP-MIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 7 ~~~~~il~~~~-~~~-GHi~p-~l~LA~~L~~rGH~Vt~~~~ 45 (496)
|+||||+++.. |-. |...- .-.+++.|.++||+|+++-.
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 45889987764 433 22222 44456777788999997753
No 235
>PRK05920 aromatic acid decarboxylase; Validated
Probab=55.63 E-value=20 Score=32.33 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKT 54 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (496)
++||++...++.+ ..=...+.+.|.+.||+|+++.+.....++..
T Consensus 3 ~krIllgITGsia-a~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASG-AIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 4677776655544 46889999999999999999999987766654
No 236
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=54.91 E-value=16 Score=33.74 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=27.3
Q ss_pred CEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCC
Q 010988 10 PHFVLFPFLAQGHMIP------------MIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p------------~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|||++...|+.-.+.| =.+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 4677777666655544 257889999999999998754
No 237
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=54.68 E-value=92 Score=31.25 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNG-AAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rG-H~Vt~~~~~ 46 (496)
|+||+++-.+..|+ .+|..|+++| ++|+++.-.
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCC
Confidence 57899988766664 5799999999 999998765
No 238
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=54.62 E-value=6.2 Score=39.36 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCcEEEe-CcchhhhhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCc
Q 010988 342 GRGILIL-GWAPQVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGE 420 (496)
Q Consensus 342 ~~nv~v~-~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~ 420 (496)
.++++.. +..+..++|..+++ +||=- ...+.|.++.++|+|....-.|.+... .|.- .+..+ +.+
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~------rg~~--~~~~~---~~p 316 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE------RGFY--FDYEE---DLP 316 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBS--S-TTT---SSS
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc------cCCC--CchHh---hCC
Confidence 4566654 44567889999998 99987 447889999999999888777777432 2332 22110 000
Q ss_pred ccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 010988 421 EEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMI 475 (496)
Q Consensus 421 ~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~ 475 (496)
- ...-+.++|.++|..+++++. .++++-+++.+.+-.. ..|.++.+.+
T Consensus 317 g---~~~~~~~eL~~~i~~~~~~~~---~~~~~~~~~~~~~~~~-~Dg~s~eri~ 364 (369)
T PF04464_consen 317 G---PIVYNFEELIEAIENIIENPD---EYKEKREKFRDKFFKY-NDGNSSERIV 364 (369)
T ss_dssp S----EESSHHHHHHHHTTHHHHHH---HTHHHHHHHHHHHSTT---S-HHHHHH
T ss_pred C---ceeCCHHHHHHHHHhhhhCCH---HHHHHHHHHHHHhCCC-CCchHHHHHH
Confidence 0 013578999999999987653 3455556666665432 3444443333
No 239
>PHA02542 41 41 helicase; Provisional
Probab=54.59 E-value=1.6e+02 Score=30.48 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=33.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARF 52 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (496)
+++..-|+.|-..-.+.+|...++.|+.|.|+.-+-....+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 45566789999999999999999899999999887555433
No 240
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=54.58 E-value=48 Score=29.44 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=48.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCc-chhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcc
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTTPA-NAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENF 87 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 87 (496)
+++-+-..+.|-++-...|+++|.++ |+.|.+-+... ..+.+++.. +..+....+|.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~------~~~v~~~~~P~-------------- 81 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL------PDRVDVQYLPL-------------- 81 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-------GGG-SEEE-----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC------CCCeEEEEeCc--------------
Confidence 44444456799999999999999988 89988877643 333232221 11222222330
Q ss_pred cCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc--chHHHHHhcCCCeEEEe
Q 010988 88 DMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP--WTVDTAARFNIPRISFH 148 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~--~a~~~A~~lgiP~v~~~ 148 (496)
+ .-..++++++. .+||++|.-..-. .....|+..|||.+.++
T Consensus 82 ------D-----------~~~~~~rfl~~--~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 82 ------D-----------FPWAVRRFLDH--WRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ------S-----------SHHHHHHHHHH--H--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ------c-----------CHHHHHHHHHH--hCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 0 12245566777 7999987543333 44557777899999865
No 241
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=54.53 E-value=1e+02 Score=29.99 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=24.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|||+|+..+..+ +...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 589988765543 66778888999999877654
No 242
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=53.80 E-value=10 Score=32.58 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=25.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
||.++..+..|+ ++|..|+++||+|++.....
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 566666665664 78999999999999999874
No 243
>PRK05595 replicative DNA helicase; Provisional
Probab=53.77 E-value=1.9e+02 Score=29.72 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=33.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLA-QNGAAITIVTTPANAARFKT 54 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~~~ 54 (496)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+-....+..
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHH
Confidence 45566688999999999999876 56999999998865544433
No 244
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=53.76 E-value=24 Score=35.51 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=28.5
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEE-eCCcc
Q 010988 11 HFVLFPFL-AQGHMIPMIDIGRLLAQNGAAITIV-TTPAN 48 (496)
Q Consensus 11 ~il~~~~~-~~GHi~p~l~LA~~L~~rGH~Vt~~-~~~~~ 48 (496)
+|++.... +.|-..=.+.|.++|++||++|.=+ +.|+|
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDY 41 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDY 41 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCc
Confidence 45555443 4899999999999999999999755 44433
No 245
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=53.63 E-value=2.2e+02 Score=28.48 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKT 54 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (496)
+++..-|+.|-..=++.+|..++++|..|.++..+...+.+..
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~ 127 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKL 127 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHH
Confidence 3455557899999999999999999999999988765554443
No 246
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=53.56 E-value=1.6e+02 Score=30.10 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=35.4
Q ss_pred CE-EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 010988 10 PH-FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARF 52 (496)
Q Consensus 10 ~~-il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (496)
.+ |+|+..++.|-..-...||..|.++|++|.+++.+.+....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA 143 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGA 143 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhH
Confidence 44 45555678999999999999999999999999998776433
No 247
>PRK10490 sensor protein KdpD; Provisional
Probab=53.50 E-value=22 Score=40.26 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=35.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
++||.+-..|+-|-.+.|+.-|.+|+++|++|.+..-+.
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~ 62 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVET 62 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeC
Confidence 578999999999999999999999999999999876553
No 248
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=53.39 E-value=1.2e+02 Score=30.77 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=24.4
Q ss_pred HHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEe
Q 010988 112 NLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFH 148 (496)
Q Consensus 112 ~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~ 148 (496)
..++. .+||++|.. ..+..+|+++|||.+.+.
T Consensus 344 ~~~~~--~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEE--YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhh--cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 33445 699999987 336678999999999843
No 249
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.31 E-value=64 Score=32.41 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=36.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
=|++---|+.|--.=+++++..|+++| .|.+++.+...+.++-.
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklR 138 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLR 138 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHH
Confidence 356666799999999999999999999 99999998776655443
No 250
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=52.93 E-value=1.7e+02 Score=30.50 Aligned_cols=48 Identities=6% Similarity=-0.038 Sum_probs=39.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHh
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVAR 58 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~ 58 (496)
-+++...|+.|-..=.++++.+.+++|..|.+++.+...+.+......
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~ 312 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYS 312 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHH
Confidence 456666678999999999999999999999999998777766666544
No 251
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=52.49 E-value=1.1e+02 Score=29.32 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=20.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
||+++.-.-.-=..-+-.....++++||+|++++-
T Consensus 2 rvL~V~AHPDDE~l~~GGtiA~~a~~G~~V~vV~~ 36 (283)
T TIGR03446 2 RLMAVHAHPDDESSKGAATMARYAAEGHDVMVVTC 36 (283)
T ss_pred eEEEEEeCCCcHHHhHHHHHHHHHHCCCeEEEEEe
Confidence 44444322222233455566677889999998853
No 252
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=52.33 E-value=1.7e+02 Score=27.81 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCEE-EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010988 9 QPHF-VLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAA 50 (496)
Q Consensus 9 ~~~i-l~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (496)
.+++ +|+..++-|-..-...||..|+++|++|.++..+.+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 3455 55555679999999999999999999999998876543
No 253
>PRK08760 replicative DNA helicase; Provisional
Probab=52.29 E-value=68 Score=33.32 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=32.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQ-NGAAITIVTTPANAARF 52 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~ 52 (496)
+++...|+.|-..-.+.+|...+. .|+.|.|++.+.....+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 455666899999999999998875 49999999887655433
No 254
>PRK06321 replicative DNA helicase; Provisional
Probab=52.25 E-value=2.2e+02 Score=29.54 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=32.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQ-NGAAITIVTTPANAARF 52 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~ 52 (496)
+++...|+.|-..-.+.+|...+. .|..|.|++.+-....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 455667899999999999999874 59999999887554433
No 255
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=51.76 E-value=21 Score=31.63 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=32.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKT 54 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (496)
||++...++.|-+.- ..+.+.|.++|++|.++.++....++..
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 355555555555554 7899999999999999999987776643
No 256
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=51.71 E-value=49 Score=29.40 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=36.9
Q ss_pred CCEEEEEcC---CC-ccCHHHH-HHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEee
Q 010988 9 QPHFVLFPF---LA-QGHMIPM-IDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQ 72 (496)
Q Consensus 9 ~~~il~~~~---~~-~GHi~p~-l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~ 72 (496)
|-||.++.. |+ +|=+--+ -.|+..|+++||+||+.+.....+.-.. .-.+++...+|
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~-------~y~gv~l~~i~ 62 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF-------EYNGVRLVYIP 62 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc-------ccCCeEEEEeC
Confidence 347777763 55 6766664 4678888899999999988654422111 12356776665
No 257
>PRK00784 cobyric acid synthase; Provisional
Probab=50.94 E-value=1.5e+02 Score=30.86 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=27.4
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 11 HFVLFPFL-AQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 11 ~il~~~~~-~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
.|++.... .-|-..=...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 35554333 489999999999999999999987643
No 258
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=50.90 E-value=69 Score=26.41 Aligned_cols=38 Identities=11% Similarity=0.248 Sum_probs=28.3
Q ss_pred CeEEEEeeCCccCCChhhHHHHHHHHHh--CCCCeEEEEe
Q 010988 281 NSVVYVCLGSICNLTSSQMIELGLGLEA--SKKPFIWVIR 318 (496)
Q Consensus 281 ~~vI~vs~GS~~~~~~~~~~~~~~a~~~--~~~~~i~~~~ 318 (496)
+.++++++||......+.+..+.+.+++ .+..+-|...
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3589999999977555567778888754 4667777764
No 259
>PRK10867 signal recognition particle protein; Provisional
Probab=50.85 E-value=1.4e+02 Score=30.59 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=36.6
Q ss_pred CEE-EEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHHHH
Q 010988 10 PHF-VLFPFLAQGHMIPMIDIGRLLAQN-GAAITIVTTPANAARFKTV 55 (496)
Q Consensus 10 ~~i-l~~~~~~~GHi~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~~ 55 (496)
.++ +++..++.|-..-...||..|+++ |+.|.++..+.+.....+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQ 147 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQ 147 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHH
Confidence 454 555556799999999999999999 9999999998776654433
No 260
>PRK09620 hypothetical protein; Provisional
Probab=50.67 E-value=25 Score=32.46 Aligned_cols=38 Identities=11% Similarity=-0.086 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIP------------MIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p------------~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
.+||++...|+.=.+.| =..||++|.++|++|+++..+
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45888887775444333 257899999999999999765
No 261
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=50.51 E-value=1.7e+02 Score=29.77 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=24.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|+.++..+.. .+.+++.|.+-|-+|+.+.+.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 6777766655 788888888899999988666
No 262
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=50.49 E-value=34 Score=31.45 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 22 HMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 22 Hi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|+..|...|++|.++||+|+++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6788999999999999999999887
No 263
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=50.36 E-value=63 Score=27.97 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=23.3
Q ss_pred cccccccccCCChh------hHHHHHHhCCcEeccCC
Q 010988 359 HPSIGGFLTHCGWN------SSLEAISAGVPMITWPL 389 (496)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 389 (496)
++.+ +++|+|-| ++.||...++|||++.-
T Consensus 60 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVA--VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEE--EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 4555 88888855 77899999999999954
No 264
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=50.25 E-value=1.5e+02 Score=25.04 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=22.5
Q ss_pred cccccccccCCChh------hHHHHHHhCCcEeccCC
Q 010988 359 HPSIGGFLTHCGWN------SSLEAISAGVPMITWPL 389 (496)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 389 (496)
++.+ +++|+|-| .+.+|...++|+|++..
T Consensus 59 ~~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 59 KPGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CCEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3445 88886644 78899999999999964
No 265
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=50.09 E-value=28 Score=30.99 Aligned_cols=39 Identities=10% Similarity=0.021 Sum_probs=32.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANA 49 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (496)
||++.-.++.|=+.-...+.++|.+.|++|+++.++...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 677777777777777779999999999999999988654
No 266
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=48.84 E-value=2.1e+02 Score=29.24 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEE
Q 010988 108 LPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISF 147 (496)
Q Consensus 108 ~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~ 147 (496)
.++.++++. .+||++|.+.. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~--~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKE--LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHh--cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 466777887 79999999964 457899999999874
No 267
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=48.74 E-value=2.3e+02 Score=26.40 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=28.4
Q ss_pred hHHHHHHHHhc------CCCCeEEE-EcCCCc-chHHHHHhcCCCeEEEecc
Q 010988 107 QLPLENLLKEL------APKPSCIV-SDMCYP-WTVDTAARFNIPRISFHGF 150 (496)
Q Consensus 107 ~~~l~~ll~~~------~~~pDlVI-~D~~~~-~a~~~A~~lgiP~v~~~~~ 150 (496)
.++..++.+.+ +.-||+++ .|+..- -|..=|+++|||+|.+.-+
T Consensus 137 ~re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 137 TRELEKLEKSLGGIKDMKGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred HHHHHHHHHhhcchhhccCCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 34445554443 24499986 565444 5666788999999997543
No 268
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=48.59 E-value=75 Score=29.21 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
+++...++.|-..-..+++.+.+++|..|.|++.+.....+.+.
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~ 71 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ 71 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH
Confidence 45555677999999999988888899999999987655444443
No 269
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=47.69 E-value=81 Score=31.06 Aligned_cols=97 Identities=10% Similarity=0.110 Sum_probs=59.2
Q ss_pred CCeEEEEeeCCcc----CCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCC---c-EEEeCc-
Q 010988 280 PNSVVYVCLGSIC----NLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGR---G-ILILGW- 350 (496)
Q Consensus 280 ~~~vI~vs~GS~~----~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~---n-v~v~~~- 350 (496)
+++.|.+..|+.. ..+.+.+.++++.+...+.++++. ++.. +.+ .-+.+....... + +.+.+-
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~-e~~------~~~~i~~~~~~~~~~~~~~l~g~~ 250 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAK-DHE------AGNEILAALNTEQQAWCRNLAGET 250 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHH-hHH------HHHHHHHhcccccccceeeccCCC
Confidence 4568888888742 267888899998887667776654 4432 111 111222211111 1 223333
Q ss_pred -ch-hhhhhccccccccccCCChhhHHHHHHhCCcEecc
Q 010988 351 -AP-QVLILSHPSIGGFLTHCGWNSSLEAISAGVPMITW 387 (496)
Q Consensus 351 -~p-q~~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 387 (496)
+. -.+++.++++ +|+. -.|-+.=|.+.|+|+|.+
T Consensus 251 sL~el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 251 QLEQAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred CHHHHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 23 3458888888 8884 467888999999999865
No 270
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=47.57 E-value=42 Score=34.64 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=34.8
Q ss_pred CCCCEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCCc
Q 010988 7 SQQPHFVLFPFLAQGHMIPM------------IDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~------------l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
.+..||++...|+.=.+.|. .+||+++..+|++||+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 45679999998888887774 589999999999999999774
No 271
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=47.13 E-value=1.5e+02 Score=23.77 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCCCchhhHHHHHH
Q 010988 22 HMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLHSTDLLFNFFK 101 (496)
Q Consensus 22 Hi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 101 (496)
+-.-+..+++.|.+.|++|. +++...+.+.+. ++.+..+.. ..+ .... .
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~------~~~-~~~~------~------- 59 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAW------PSE-EPQN------D------- 59 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeee------ccC-CCCC------C-------
Confidence 44568899999999999984 455545455442 444433320 000 0000 0
Q ss_pred HHHhhhHHHHHHHHhcCCCCeEEEEcCC---------CcchHHHHHhcCCCeEE
Q 010988 102 SLTLLQLPLENLLKELAPKPSCIVSDMC---------YPWTVDTAARFNIPRIS 146 (496)
Q Consensus 102 ~~~~~~~~l~~ll~~~~~~pDlVI~D~~---------~~~a~~~A~~lgiP~v~ 146 (496)
.+.+.+++++ .++|+||.-+. .+..-..|-.+|||+++
T Consensus 60 -----~~~i~~~i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 -----KPSLRELLAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -----chhHHHHHHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 1456677777 89999998532 23455678889999974
No 272
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=47.04 E-value=2.1e+02 Score=29.22 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=35.4
Q ss_pred CEE-EEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhHHH
Q 010988 10 PHF-VLFPFLAQGHMIPMIDIGRLLA-QNGAAITIVTTPANAARFKT 54 (496)
Q Consensus 10 ~~i-l~~~~~~~GHi~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~~~ 54 (496)
.++ +++..++.|-..-...||..|. ++|+.|.++..+.+......
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~ 145 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIE 145 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHH
Confidence 445 5555567999999999999997 58999999998877654433
No 273
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=46.49 E-value=1.7e+02 Score=27.30 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCccc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFD 88 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 88 (496)
+++|+++...+. ...|++.|...++.+++.+...+-....+. +..... .++
T Consensus 2 ~~~ilvlGGT~D-----ar~la~~L~~~~~~~~~ss~t~~g~~l~~~----------~~~~~~----------~G~---- 52 (257)
T COG2099 2 MMRILLLGGTSD-----ARALAKKLAAAPVDIILSSLTGYGAKLAEQ----------IGPVRV----------GGF---- 52 (257)
T ss_pred CceEEEEeccHH-----HHHHHHHhhccCccEEEEEcccccccchhc----------cCCeee----------cCc----
Confidence 567777654433 478999999999777777655332211110 000000 000
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcc------hHHHHHhcCCCeEE
Q 010988 89 MLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPW------TVDTAARFNIPRIS 146 (496)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~------a~~~A~~lgiP~v~ 146 (496)
.-.+.+.+++++ .+.|+||=-.+-++ +..+|+..|||++.
T Consensus 53 ----------------l~~e~l~~~l~e--~~i~llIDATHPyAa~iS~Na~~aake~gipy~r 98 (257)
T COG2099 53 ----------------LGAEGLAAFLRE--EGIDLLIDATHPYAARISQNAARAAKETGIPYLR 98 (257)
T ss_pred ----------------CCHHHHHHHHHH--cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEE
Confidence 014567888888 79999884444443 35578889999997
No 274
>PRK07206 hypothetical protein; Provisional
Probab=46.21 E-value=76 Score=32.14 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=23.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
.+|+++-.... -..+++++.++|++|+++....
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 35666654322 3468999999999999887663
No 275
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.89 E-value=1.4e+02 Score=29.88 Aligned_cols=45 Identities=9% Similarity=0.143 Sum_probs=36.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVV 56 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (496)
|+|+..-+.|-..-+..+|-.+.++|+.+-+++.+.++.-.-+.+
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQL 148 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQL 148 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHH
Confidence 455556689999999999999999999999999987766544443
No 276
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=45.79 E-value=2.2e+02 Score=25.39 Aligned_cols=98 Identities=11% Similarity=0.051 Sum_probs=53.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC-----CcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCc
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTT-----PANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSEN 86 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~ 86 (496)
|.+++..+.|-....+.+|-+-.-+|.+|.++.. ...+..+... .+.++.++..+ +++..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~------~~~~v~~~~~~---------~g~tw 95 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEK------FGLGVEFHGMG---------EGFTW 95 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHh------hccceeEEecC---------CceeC
Confidence 5666777788887777777777777778777742 1222222221 13356665543 33322
Q ss_pred ccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCc
Q 010988 87 FDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYP 131 (496)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~ 131 (496)
...... . .. .....-.....+.+.+ .++|+||.|-+.+
T Consensus 96 ~~~~~~-~---d~-~aa~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 96 ETQDRE-A---DI-AAAKAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred CCcCcH-H---HH-HHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 211111 1 11 2333334445566666 7999999997655
No 277
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=45.45 E-value=87 Score=25.18 Aligned_cols=44 Identities=11% Similarity=-0.022 Sum_probs=34.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
++..+.++..|-.....++..|.++|++|.++........+.+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~ 45 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEA 45 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHH
Confidence 56677788999999999999999999999999765444444333
No 278
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=45.30 E-value=1.3e+02 Score=32.69 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVT 44 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~ 44 (496)
++||+++...-.-.+.-+-.....|+++||+|+++.
T Consensus 369 ~~rvLv~spHPDDevi~~GGTlarl~~~G~~V~vv~ 404 (652)
T PRK02122 369 PKRVIIFSPHPDDDVISMGGTFRRLVEQGHDVHVAY 404 (652)
T ss_pred CceEEEEEeCCCchHhhhHHHHHHHHHCCCcEEEEE
Confidence 466766665445577888888899999999999874
No 279
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=45.27 E-value=1.9e+02 Score=29.46 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=33.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLA-QNGAAITIVTTPANAARFK 53 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~~ 53 (496)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+.....+.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~ 239 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLG 239 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 45566688999999999998887 6799999999886554443
No 280
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=44.97 E-value=2.7e+02 Score=28.95 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEE
Q 010988 109 PLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRIS 146 (496)
Q Consensus 109 ~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~ 146 (496)
++.+.++. .+||++|.. .....+|+++|||++-
T Consensus 384 e~~~~i~~--~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKE--AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhh--cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 45556666 689999997 4456789999999984
No 281
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=44.96 E-value=40 Score=34.07 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=38.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
+++.||++...++. ...=...+.+.|.+.|++|.++.++....++.+.
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~ 51 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTPL 51 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHH
Confidence 45678888776665 4557789999999999999999999877766653
No 282
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=44.94 E-value=1.4e+02 Score=30.44 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQ-NGAAITIVTTPANAARFKT 54 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~~ 54 (496)
+++...|+.|=..-.+.+|..++. .|+.|.|++.+.....+..
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 455666889999999999999876 5999999998866554433
No 283
>PRK11823 DNA repair protein RadA; Provisional
Probab=44.73 E-value=2.4e+02 Score=29.05 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKT 54 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (496)
+++...|+.|-..=+++++..++++|++|.+++.+...+.+..
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ 125 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKL 125 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHH
Confidence 4555567899999999999999989999999998866655543
No 284
>PRK07952 DNA replication protein DnaC; Validated
Probab=44.68 E-value=1.1e+02 Score=28.57 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=26.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
-+++...++.|=..=..+||.+|.++|+.|.+++..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~ 136 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA 136 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH
Confidence 456666667888777888888888888888777544
No 285
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=44.57 E-value=42 Score=30.14 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
++||.+-..|+-|-.+.|+.=|.+|.++|.+|++...+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 67899999999999999999999999999999998665
No 286
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=43.93 E-value=1.2e+02 Score=25.22 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=36.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAA 50 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (496)
+.||++...+..+|-..---++..|...|++|.........+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e 43 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPE 43 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHH
Confidence 579999999999999999999999999999999887654433
No 287
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=43.88 E-value=1.5e+02 Score=29.12 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeC
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGA-AITIVTT 45 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH-~Vt~~~~ 45 (496)
+..||+++-.++.| ..+|+.|++.|+ +++++=.
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 56789999988877 678999999998 5665533
No 288
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=43.26 E-value=2.1e+02 Score=31.37 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=28.3
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 11 HFVLFPFL-AQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 11 ~il~~~~~-~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
.|++.+.. ..|=..=.+.|++.|.++|.+|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 45555444 488999999999999999999998754
No 289
>PRK07454 short chain dehydrogenase; Provisional
Probab=43.20 E-value=1.2e+02 Score=27.55 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=26.7
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 5 GSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 5 ~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|+.+.+|.++++. +.|.+ =..|+++|.++|++|+++.-.
T Consensus 1 ~~~~~~k~vlItG-~sg~i--G~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 1 MSLNSMPRALITG-ASSGI--GKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCCCCCEEEEeC-CCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3445667666663 34433 357899999999999988754
No 290
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=42.69 E-value=3e+02 Score=26.30 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
+++|+++-.+..|. .+|+.|+++||.|.++..+...+.....
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 56899998888886 4799999999999999888766555443
No 291
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=42.65 E-value=41 Score=32.32 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=36.4
Q ss_pred CCEEEEEcCCCccCHHH--------HHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHh
Q 010988 9 QPHFVLFPFLAQGHMIP--------MIDIGRLLAQNGAAITIVTTPANAARFKTVVAR 58 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p--------~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~ 58 (496)
.-+|++++.....|..+ ...||+.|...|.+|++++.+.+...+++....
T Consensus 40 ~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~ 97 (291)
T PF14336_consen 40 AKSVLIVTGFPVPPAPPPETDGPPGAAALARALQALGKEVVIVTDERCAPVVKAAVRA 97 (291)
T ss_pred CCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHH
Confidence 34676666433233322 788999999999999999999888887776443
No 292
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=42.58 E-value=27 Score=30.18 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVT 44 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~ 44 (496)
|+||.|+-.+..| ..+|+.|.++||+|+..-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 5789998877655 578999999999999775
No 293
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=42.56 E-value=28 Score=28.92 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=25.9
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 010988 20 QGHMIPMIDIGRLLAQNGAAITIVTTPANAARFK 53 (496)
Q Consensus 20 ~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (496)
.-.+.-.+=++..|.++||+|+++.++.....++
T Consensus 10 Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 10 PVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp TTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 5556667788999999999999999996555443
No 294
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=42.53 E-value=2.4e+02 Score=25.52 Aligned_cols=36 Identities=25% Similarity=0.205 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEE
Q 010988 108 LPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRIS 146 (496)
Q Consensus 108 ~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~ 146 (496)
++.++.++. .-+.+|+-.+.......|+..|+|++.
T Consensus 71 ~~a~~a~~a---GA~FivsP~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 71 EQLRQAVDA---GAQFIVSPGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHHc---CCCEEECCCCCHHHHHHHHHcCCcEEC
Confidence 345555554 788888887777778888889998886
No 295
>PRK09165 replicative DNA helicase; Provisional
Probab=42.50 E-value=2.8e+02 Score=29.06 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=33.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCeEEEEeCCcchhhHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQN---------------GAAITIVTTPANAARFKT 54 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~r---------------GH~Vt~~~~~~~~~~~~~ 54 (496)
+++...|+.|-..-.+.+|...+.+ |..|.|++.+-....+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 4556668899999999999888754 889999988866554443
No 296
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=42.48 E-value=51 Score=31.69 Aligned_cols=38 Identities=11% Similarity=-0.040 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCeEEEEeC
Q 010988 8 QQPHFVLFPFLAQG-H---MIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 8 ~~~~il~~~~~~~G-H---i~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
+++||+++..+..+ | +....+++++|.+.||+|+++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 47799988865322 2 45677899999999999988753
No 297
>PLN02240 UDP-glucose 4-epimerase
Probab=42.45 E-value=39 Score=33.14 Aligned_cols=37 Identities=11% Similarity=-0.000 Sum_probs=26.0
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 5 GSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 5 ~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
|++++++|++. ++.|.+- ..|++.|.++||+|+.+..
T Consensus 1 ~~~~~~~vlIt--GatG~iG--~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 1 MSLMGRTILVT--GGAGYIG--SHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCCCCEEEEE--CCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 45666777765 4455553 3568899999999998853
No 298
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=42.42 E-value=24 Score=33.33 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQN-GAAITIVTTPANAARFKT 54 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~ 54 (496)
+++...++.|-..-..+++..++.. |+.|.|++.+.....+..
T Consensus 33 ~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~ 76 (271)
T cd01122 33 IILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTAR 76 (271)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHH
Confidence 4555557899999999999999877 999999998765544443
No 299
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=42.35 E-value=34 Score=30.95 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=31.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
+=|++..+|+.|-..-.-.||++|.+++|+|.-++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 4466677799999999999999999999999866554
No 300
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.33 E-value=2.1e+02 Score=29.02 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=34.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANA 49 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (496)
-.|+|+..++.|-..-+..||..|..+|+.|.++..+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4567777778999999999999999999999999988765
No 301
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=42.24 E-value=51 Score=28.45 Aligned_cols=29 Identities=28% Similarity=0.181 Sum_probs=24.2
Q ss_pred EEEEeeCCccCCChhhHHHHHHHHHhCCC
Q 010988 283 VVYVCLGSICNLTSSQMIELGLGLEASKK 311 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~~~~~a~~~~~~ 311 (496)
.+|+|+||....+...++..++++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 79999999988777778888888888653
No 302
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=41.56 E-value=31 Score=33.89 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
||||.|+..+..| ..+|..|+++||+|+++...
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 4689999877776 45788899999999998764
No 303
>PRK11519 tyrosine kinase; Provisional
Probab=41.30 E-value=94 Score=34.23 Aligned_cols=40 Identities=8% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCCCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 7 SQQPHFVLFPF--LAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 7 ~~~~~il~~~~--~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
.++.|++++++ |+-|-..-...||..|++.|++|.++-.+
T Consensus 523 ~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 523 QAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 34567777776 57899999999999999999999998554
No 304
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=41.16 E-value=46 Score=31.39 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=29.0
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 11 HFVLFPF-LAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 11 ~il~~~~-~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
||+.+.. ++-|-..-...||..|+++|++|.++=.+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5544444 67999999999999999999999988333
No 305
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=41.12 E-value=2.2e+02 Score=27.20 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=32.3
Q ss_pred CEEE-EEcCCCccCHHHHHHHHHHHHhC-C-CeEEEEeCCcchh
Q 010988 10 PHFV-LFPFLAQGHMIPMIDIGRLLAQN-G-AAITIVTTPANAA 50 (496)
Q Consensus 10 ~~il-~~~~~~~GHi~p~l~LA~~L~~r-G-H~Vt~~~~~~~~~ 50 (496)
.+++ |+...+.|-..-...||..++.+ | +.|.+++.+.+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 4454 44445699999999999999887 5 9999999987653
No 306
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=40.89 E-value=41 Score=31.72 Aligned_cols=41 Identities=5% Similarity=0.067 Sum_probs=26.7
Q ss_pred CeEEEEeeCCccCCChh-hHHHHHHHHHh--CCCCeEEEEeCCC
Q 010988 281 NSVVYVCLGSICNLTSS-QMIELGLGLEA--SKKPFIWVIRGGN 321 (496)
Q Consensus 281 ~~vI~vs~GS~~~~~~~-~~~~~~~a~~~--~~~~~i~~~~~~~ 321 (496)
|.+++|||||....... -+..+-+.+++ ++..+-|++....
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~~ 44 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSRI 44 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-HH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHHH
Confidence 45899999998775444 67778877776 6889999876553
No 307
>PRK05636 replicative DNA helicase; Provisional
Probab=40.89 E-value=2.9e+02 Score=29.00 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=31.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLA-QNGAAITIVTTPANAARF 52 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~ 52 (496)
+++...|+.|-..-.+.+|...+ +.|..|.|++.+-....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 45566788999999999998876 458899999887554433
No 308
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=40.83 E-value=53 Score=29.40 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 8 QQPHFVLFPF--LAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 8 ~~~~il~~~~--~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
..+|++.++. ++-|-..-...||..|+++|++|.++=..
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3467666654 46888889999999999999999887544
No 309
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=40.78 E-value=61 Score=26.80 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=24.7
Q ss_pred CEEEEEcC-CCccCHH--HHHHHHHHHHhCCCeE-EEEeCC
Q 010988 10 PHFVLFPF-LAQGHMI--PMIDIGRLLAQNGAAI-TIVTTP 46 (496)
Q Consensus 10 ~~il~~~~-~~~GHi~--p~l~LA~~L~~rGH~V-t~~~~~ 46 (496)
||++|+-. +-+|+-. -.+.+|+.+.++||+| .++-..
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 46655544 3355544 4777899999999994 666554
No 310
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=40.72 E-value=1.1e+02 Score=27.97 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=34.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHHHHHHh
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQN-GAAITIVTTPANAARFKTVVAR 58 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~~~~~ 58 (496)
-+++...|+.|-..=.++++.+-+++ |..|.+++.......+.+....
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s 69 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKS 69 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHH
Confidence 45666678899999999988777778 9999999988766655555443
No 311
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=40.71 E-value=3.3e+02 Score=26.70 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=24.5
Q ss_pred CCCeEEE-EcCCCc-chHHHHHhcCCCeEEEecch
Q 010988 119 PKPSCIV-SDMCYP-WTVDTAARFNIPRISFHGFS 151 (496)
Q Consensus 119 ~~pDlVI-~D~~~~-~a~~~A~~lgiP~v~~~~~~ 151 (496)
..||+|| .|...- .+..=|..+|||.|.+.-+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 4799986 554444 77778999999999975443
No 312
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=40.66 E-value=44 Score=33.67 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=36.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
.+||++...++.|= .-...+.+.|.+.|++|.++.++....++...
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 46887777665544 55899999999999999999999877766543
No 313
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=40.66 E-value=34 Score=30.02 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=22.1
Q ss_pred ccccccccccCCChhhHHHHHHhCCcEeccCCcc
Q 010988 358 SHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFG 391 (496)
Q Consensus 358 ~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~ 391 (496)
-+..++++|++||...+..... ++|+|-+|...
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 3455566999999998888877 99999999753
No 314
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=40.64 E-value=4.1e+02 Score=27.40 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEE
Q 010988 108 LPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISF 147 (496)
Q Consensus 108 ~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~ 147 (496)
.++.+.++. .+||++|.. .....+|+++|||++.+
T Consensus 385 ~e~~~~i~~--~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLE--YKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhh--cCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 356677777 699999986 23456788999999874
No 315
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=40.36 E-value=79 Score=29.15 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=34.9
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 010988 11 HFVLFPF-LAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARF 52 (496)
Q Consensus 11 ~il~~~~-~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (496)
-|.|+.. |+-|-..-.+.||.+|+++|-.|+++=.+++++..
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 3455555 67999999999999999999999999888776643
No 316
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=40.32 E-value=44 Score=30.93 Aligned_cols=43 Identities=7% Similarity=-0.019 Sum_probs=31.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTTPANAARFKT 54 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~ 54 (496)
|++.-.++.+=+.-...+.+.|.++ ||+|.++.++.....+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 4443333333346899999999999 999999999976665554
No 317
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=40.21 E-value=36 Score=29.98 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=31.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFK 53 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (496)
||++...++. ...-...+.+.|.++|++|.++.++....++.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 5666665544 44456699999999999999999987666554
No 318
>PRK07773 replicative DNA helicase; Validated
Probab=39.97 E-value=1.5e+02 Score=33.69 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQN-GAAITIVTTPANAARFKT 54 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~ 54 (496)
+++..-|+.|-..-.+.+|...+.+ |..|.|++.+.....+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 5666678999999999999998755 889999988766554433
No 319
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=39.96 E-value=40 Score=32.39 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=25.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|||.++-.+..| ..+|..|++.||+|+++...
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 478888776666 56788899999999999873
No 320
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=39.55 E-value=59 Score=29.57 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCcc--CHHHHHHHHHHHHhC---CCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQG--HMIPMIDIGRLLAQN---GAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~G--Hi~p~l~LA~~L~~r---GH~Vt~~~~~ 46 (496)
||+||+..|.-+| ..||...++++|... |++|....-|
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~v~~~~LP 43 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGEQAGALRVHSALLP 43 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhcccccCCCcEEEEEEeC
Confidence 6899988875433 599999999999664 4555554444
No 321
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=39.46 E-value=1.6e+02 Score=30.11 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=22.7
Q ss_pred ccccccccccCCChh------hHHHHHHhCCcEecc
Q 010988 358 SHPSIGGFLTHCGWN------SSLEAISAGVPMITW 387 (496)
Q Consensus 358 ~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~ 387 (496)
.++.+ +++|.|-| ++.+|.+.++|+|++
T Consensus 62 g~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 62 GRPVA--VVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCCEE--EEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 34555 88888855 788999999999999
No 322
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=39.42 E-value=53 Score=31.52 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=32.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|||.++-=++-|-..-...||..|+++|++|.++=.+
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5788888899999999999999999999999887444
No 323
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.30 E-value=43 Score=32.71 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
+|||.|+-.+..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 6799999877776 56889999999999998774
No 324
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=39.13 E-value=1.3e+02 Score=27.80 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=22.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|.++++. +.|-+ =..+++.|+++|++|++....
T Consensus 11 k~vlItG-a~g~i--G~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 11 RRALVTG-SSQGI--GYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CEEEEEC-CcchH--HHHHHHHHHHcCCEEEEEeCC
Confidence 4455553 33444 367899999999999876543
No 325
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=39.04 E-value=55 Score=30.01 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCcc--CHHHHHHHHHHHHhC---CCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQG--HMIPMIDIGRLLAQN---GAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~G--Hi~p~l~LA~~L~~r---GH~Vt~~~~~ 46 (496)
|||||+..|.-+| -+||...++++|... |++|....-|
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~~~~~~~~v~~~~lP 43 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDGRTIAGATVISRIVP 43 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccccccCCeEEEEEEeC
Confidence 5788888875433 499999999999753 5666554433
No 326
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.66 E-value=37 Score=32.57 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 5 GSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 5 ~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
|++++.||.++-.+..|. .+|..|+.+||+|+++-...
T Consensus 1 ~~~~~~~V~ViGaG~mG~-----~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGA-----GIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred CCCCccEEEEEcccHHHH-----HHHHHHHhCCCEEEEEECCH
Confidence 456667899988777664 78889999999999997653
No 327
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=38.56 E-value=1.5e+02 Score=26.93 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|+++++++.. +.|.+- ..|++.|.++||+|+.+...
T Consensus 3 ~~~~~ilItG--asg~iG--~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTG--ASRGIG--RAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCCCEEEEEC--CCcHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 5455666554 233332 56889999999998777654
No 328
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=38.53 E-value=3e+02 Score=24.84 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=26.7
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEe
Q 010988 12 FVLFPF-LAQGHMIPMIDIGRLLAQNGAAITIVT 44 (496)
Q Consensus 12 il~~~~-~~~GHi~p~l~LA~~L~~rGH~Vt~~~ 44 (496)
|++... +..|-..=.+.|++.|+++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 344433 458999999999999999999998874
No 329
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=38.45 E-value=46 Score=29.22 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=26.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEcCCCcc--hHHHHHhcCCCeEEEe
Q 010988 107 QLPLENLLKELAPKPSCIVSDMCYPW--TVDTAARFNIPRISFH 148 (496)
Q Consensus 107 ~~~l~~ll~~~~~~pDlVI~D~~~~~--a~~~A~~lgiP~v~~~ 148 (496)
...++++++. +||+||....... .....+..|||++.+.
T Consensus 59 ~~n~E~ll~l---~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 59 SLNVELIVAL---KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCHHHHhcc---CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 3556777765 9999998654432 3344577999998853
No 330
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=38.15 E-value=1.4e+02 Score=26.56 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEe
Q 010988 23 MIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEI 71 (496)
Q Consensus 23 i~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i 71 (496)
=.-+..+|+.|.+.|+++. .+......+++. ++.+..+
T Consensus 10 K~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~---------GI~v~~V 47 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL--STGGTAKFLKEA---------GIPVTDV 47 (187)
T ss_pred cccHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCeEEEh
Confidence 3457899999999999984 555556566553 5766655
No 331
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=38.00 E-value=68 Score=29.40 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCe-EEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAA-ITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~-Vt~~~~~ 46 (496)
|+=|+|...|..|-......|.++|+++||+ ++.+...
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 3467888889999999999999999999986 4444433
No 332
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=37.70 E-value=3.7e+02 Score=26.20 Aligned_cols=39 Identities=5% Similarity=0.087 Sum_probs=32.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANA 49 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (496)
-|+++..++-|-..-+..||..|+.+|++|.++..+.+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 345555567999999999999999999999999887654
No 333
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=37.61 E-value=52 Score=28.88 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=27.5
Q ss_pred ccCHHH-HHHHHHHHHh-CCCeEEEEeCCcchhhHH
Q 010988 20 QGHMIP-MIDIGRLLAQ-NGAAITIVTTPANAARFK 53 (496)
Q Consensus 20 ~GHi~p-~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 53 (496)
-||... ...+.++|++ +||+|.++.++.....++
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 378766 8899999985 599999999997776554
No 334
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=37.38 E-value=59 Score=32.21 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=52.5
Q ss_pred eEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhH-HHHHHhC-CCcEEEe-Cc----c---
Q 010988 282 SVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEE-KFEERVK-GRGILIL-GW----A--- 351 (496)
Q Consensus 282 ~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~-~~~~~~~-~~nv~v~-~~----~--- 351 (496)
.+++.+.||-+...|. .++++.+++.+++++|+..... -..+. +|+ ++.-... ...+.-. .| .
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~-~e~~l----~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQG-IEKTI----IEKENIPYYSISSGKLRRYFDLKNIKDPFL 75 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCc-ccccc----CcccCCcEEEEeccCcCCCchHHHHHHHHH
Confidence 3777777887664332 3456777777889998875554 11110 221 0100000 0000000 01 0
Q ss_pred -h-----hhhhhccccccccccCCChhh---HHHHHHhCCcEecc
Q 010988 352 -P-----QVLILSHPSIGGFLTHCGWNS---SLEAISAGVPMITW 387 (496)
Q Consensus 352 -p-----q~~~l~~~~~~~~I~HGG~gs---~~eal~~GvP~v~~ 387 (496)
. -..++.+-+-+++|++||.=| +..|...|+|+++.
T Consensus 76 ~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 76 VMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 0 012344333344999999986 88999999998763
No 335
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=37.28 E-value=1.1e+02 Score=32.44 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=50.6
Q ss_pred eeCCccCCCh-hhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEE--EeCcch--------hhh
Q 010988 287 CLGSICNLTS-SQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGIL--ILGWAP--------QVL 355 (496)
Q Consensus 287 s~GS~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~--v~~~~p--------q~~ 355 (496)
|.||...... ..-..+++.|++.+.+.+.-+.+.. . .. +-..+. ..+++. ....-- +..
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~-~----~~--l~dal~---~~~~i~~i~~~hE~~A~~~Adgyar 72 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGA-I----LP--LYDALS---QSTQIRHILARHEQGAGFIAQGMAR 72 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcc-c----HH--HHHHHh---ccCCceEEEeccHHHHHHHHHHHHH
Confidence 3455544332 3355677888888888888777664 1 11 112221 112222 111111 112
Q ss_pred hhccccccccccCCChh------hHHHHHHhCCcEeccC
Q 010988 356 ILSHPSIGGFLTHCGWN------SSLEAISAGVPMITWP 388 (496)
Q Consensus 356 ~l~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (496)
+-.++.+ +++|.|-| ++.+|.+.++|+|++.
T Consensus 73 ~tg~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 73 TTGKPAV--CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HcCCCeE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3344555 88887754 7889999999999985
No 336
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=37.19 E-value=1.3e+02 Score=28.27 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=40.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHh
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVAR 58 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~ 58 (496)
-+++.-.|+.|...-..+++...+++|..|.+++.......+.+....
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARS 72 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHH
Confidence 456666789999999999999999999999999998877777666543
No 337
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=37.13 E-value=6.4e+02 Score=28.21 Aligned_cols=168 Identities=13% Similarity=0.168 Sum_probs=100.0
Q ss_pred eEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcc-hhhhhhccc
Q 010988 282 SVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWA-PQVLILSHP 360 (496)
Q Consensus 282 ~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~-pq~~~l~~~ 360 (496)
..+|+++=.+-..+.......++.+.+.|.+++..+|... ++... +-..++-....+.+.-..+. .|.+-|+..
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~---~TA~A--I~r~iGi~~~~ed~~~~~~TG~efD~ls~~ 646 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNK---ETAEA--IAREIGIFSEDEDVSSMALTGSEFDDLSDE 646 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCH---HHHHH--HHHHhCCCcCCccccccccchhhhhcCCHH
Confidence 3899988766666666677888899999999999988765 11111 22111100001111111110 011111111
Q ss_pred cccc------cccCCC---hhhHHHHHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHH
Q 010988 361 SIGG------FLTHCG---WNSSLEAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKE 431 (496)
Q Consensus 361 ~~~~------~I~HGG---~gs~~eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~ 431 (496)
.++. ++..+- ---+.|+|..-.=++ -+.+|.-.-|-.+ +.+.+|+..... ..+
T Consensus 647 ~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geiv--AMTGDGVNDApAL-K~AdIGIAMG~~---------------GTd 708 (972)
T KOG0202|consen 647 ELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVV--AMTGDGVNDAPAL-KKADIGIAMGIS---------------GTD 708 (972)
T ss_pred HHHHHhhcceEEEecCchhHHHHHHHHHhcCCEE--EecCCCccchhhh-hhcccceeecCC---------------ccH
Confidence 1111 222222 123556666554444 4568888888888 788999888654 455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhc
Q 010988 432 DVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIMH 484 (496)
Q Consensus 432 ~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 484 (496)
.-++|-.-+|.|+ .|.. +-.|++||-+-++++..||+.+++
T Consensus 709 VaKeAsDMVL~DD----nFst--------IvaAVEEGr~IynNik~Fir~~lS 749 (972)
T KOG0202|consen 709 VAKEASDMVLADD----NFST--------IVAAVEEGRAIYNNIKNFIRYLLS 749 (972)
T ss_pred hhHhhhhcEEecC----cHHH--------HHHHHHHhHHHHHHHHHHHHHHHh
Confidence 5667777789988 4432 345779999999999999999864
No 338
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=37.09 E-value=1.6e+02 Score=30.71 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=25.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQN--GAAITIVTT 45 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~r--GH~Vt~~~~ 45 (496)
||||++..+++.| +|+..|++. |++|..+-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 5999998888877 578888777 999887744
No 339
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=37.05 E-value=44 Score=32.15 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=25.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
|||+|+..+..| ..+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 588888777766 4578889999999999987
No 340
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=37.00 E-value=1.5e+02 Score=24.63 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=36.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
+|++.+..+.+|-.----++..|...|++|+.+......+.+.+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~a 45 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDA 45 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 578888899999999999999999999999999776544434333
No 341
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=36.76 E-value=47 Score=33.80 Aligned_cols=34 Identities=9% Similarity=0.017 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
+++||.|+-.+-.| +.+|..|+++||+|+.+-..
T Consensus 2 ~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 2 SFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 46788888655444 56889999999999988543
No 342
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=36.69 E-value=2.4e+02 Score=24.06 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=66.3
Q ss_pred EEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEE-eCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhcccc
Q 010988 283 VVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVI-RGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPS 361 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~-~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~ 361 (496)
.|-|-+||.. +....+.+...|+..+..+-..+ +-+. .|+.+.+ |+.. +..-.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR----------~p~~l~~-----------~~~~---~~~~~ 55 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR----------TPERLLE-----------FVKE---YEARG 55 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT----------SHHHHHH-----------HHHH---TTTTT
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC----------CHHHHHH-----------HHHH---hccCC
Confidence 4556667764 35567778888888876654433 2232 2322211 1111 01111
Q ss_pred ccccccCCChh----hHHHHHHhCCcEeccCCccccchhH----HHHHHHhhceEEecccCCCCCCcccccccccCHHHH
Q 010988 362 IGGFLTHCGWN----SSLEAISAGVPMITWPLFGDQFCNE----KLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 433 (496)
Q Consensus 362 ~~~~I~HGG~g----s~~eal~~GvP~v~~P~~~DQ~~na----~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 433 (496)
+++||.=.|.. ++.-++. -.|+|.+|....+.... ..+.-=.|+++..-.- |...++.-+
T Consensus 56 ~~viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-----------~~~~nAA~~ 123 (150)
T PF00731_consen 56 ADVIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-----------NNGFNAALL 123 (150)
T ss_dssp ESEEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-----------THHHHHHHH
T ss_pred CEEEEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-----------cCchHHHHH
Confidence 22266655543 4444443 68999999987754322 2220012454433221 114566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 010988 434 VKAINMLMNEGGERENRRKRAREFQMMAKR 463 (496)
Q Consensus 434 ~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~ 463 (496)
.-.|-.+ .|+ .++++.+..++.+++
T Consensus 124 A~~ILa~-~d~----~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 124 AARILAL-KDP----ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHT-T-H----HHHHHHHHHHHHHHH
T ss_pred HHHHHhc-CCH----HHHHHHHHHHHHHHc
Confidence 6555544 445 777777777777664
No 343
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.44 E-value=2.8e+02 Score=25.41 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=32.9
Q ss_pred hHHHHHHHHhhcC-CceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccC
Q 010988 226 ESEYVKEYKKTKG-GKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICN 293 (496)
Q Consensus 226 e~~~~~~~~~~~~-~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~ 293 (496)
.+.++..+..++| -++..+|.+... .+.+.+|+..+ .+.|+.||...
T Consensus 145 G~~~ikal~~p~p~i~~~ptGGV~~~-----------------~~n~~~yl~aG----a~avg~Gs~L~ 192 (222)
T PRK07114 145 GPGFVKAIKGPMPWTKIMPTGGVEPT-----------------EENLKKWFGAG----VTCVGMGSKLI 192 (222)
T ss_pred CHHHHHHHhccCCCCeEEeCCCCCcc-----------------hhcHHHHHhCC----CEEEEEChhhc
Confidence 3677778888875 356666777331 25778899753 78899999854
No 344
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=36.04 E-value=2.8e+02 Score=23.79 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=33.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAAR 51 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (496)
+++...++-|-......++..|+++|.+|.++..+.+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~ 42 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPA 42 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChH
Confidence 4566678899999999999999999999999988766543
No 345
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=36.01 E-value=69 Score=31.38 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=29.6
Q ss_pred HhhhHHHHHHHHhcCCCCeEEEEcCCCcch------H----HHHHhcCCCeEE
Q 010988 104 TLLQLPLENLLKELAPKPSCIVSDMCYPWT------V----DTAARFNIPRIS 146 (496)
Q Consensus 104 ~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a------~----~~A~~lgiP~v~ 146 (496)
+...+.+.++++. .+||+||+.+.+.++ . .+.+.++||.++
T Consensus 66 eea~~~i~~mv~~--~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 66 EEALKKILEMVKK--LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 3345667777888 799999999766532 2 244679999997
No 346
>PLN02939 transferase, transferring glycosyl groups
Probab=35.96 E-value=66 Score=36.20 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=30.8
Q ss_pred CCCCEEEEEcC---CC--ccCHH-HHHHHHHHHHhCCCeEEEEeCCc
Q 010988 7 SQQPHFVLFPF---LA--QGHMI-PMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 7 ~~~~~il~~~~---~~--~GHi~-p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
.+.|||++++. |. .|-+. -.-.|.++|+++||+|.+++|..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 46799999984 21 33333 35678999999999999999864
No 347
>PLN02285 methionyl-tRNA formyltransferase
Probab=35.64 E-value=3.1e+02 Score=26.94 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=23.5
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHh--CCCeEEEEeCCc
Q 010988 6 SSQQPHFVLFPFLAQGHMIPMIDIGRLLAQ--NGAAITIVTTPA 47 (496)
Q Consensus 6 ~~~~~~il~~~~~~~GHi~p~l~LA~~L~~--rGH~Vt~~~~~~ 47 (496)
+.++|||+|+..+..|. ..+.+|.+...+ .+|+|..+.+.+
T Consensus 3 ~~~~~kI~f~Gt~~fa~-~~L~~L~~~~~~~~~~~~iv~Vvt~~ 45 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAA-TVLDALLDASQAPDSAFEVAAVVTQP 45 (334)
T ss_pred CCCccEEEEEECCHHHH-HHHHHHHhhhhccCCCCeEEEEEeCC
Confidence 46789999997654432 122223322211 378988876654
No 348
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=35.61 E-value=68 Score=28.76 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCccCHHHHHH-HHHHHHh-CCCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMID-IGRLLAQ-NGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~-LA~~L~~-rGH~Vt~~~~~ 46 (496)
||||+++-+-.+||..-+.. +++.+.+ .|++|.++..+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 45888887777899999776 5666666 89999888654
No 349
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=35.57 E-value=62 Score=30.45 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=31.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|+|.+..=++-|-..-...||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5788886688999999999999999999999888433
No 350
>PRK12743 oxidoreductase; Provisional
Probab=35.10 E-value=1.6e+02 Score=27.19 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=22.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
+|.++++..+ |.+- ..+++.|+++||+|.++..
T Consensus 2 ~k~vlItGas-~giG--~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 2 AQVAIVTASD-SGIG--KACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCEEEEECCC-chHH--HHHHHHHHHCCCEEEEEeC
Confidence 3555666433 3333 6799999999999987754
No 351
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=35.01 E-value=3.1e+02 Score=27.05 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCC
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGA-AITIVTTP 46 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH-~Vt~~~~~ 46 (496)
+..||+++-.++.| ..+|+.|++.|. +|+++=..
T Consensus 23 ~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 56789999888877 467889999999 67766554
No 352
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=34.82 E-value=1.7e+02 Score=26.78 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=34.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQN-GAAITIVTTPANAARFKTV 55 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~~ 55 (496)
+++...|+.|=..-.+.++..++.. |+.|.|++.+.....+...
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHH
Confidence 3455557799999999999999888 9999999988665544443
No 353
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=34.61 E-value=49 Score=32.10 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
||||.|+-.+..| ..+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 5799998776666 46788899999999988764
No 354
>PRK12827 short chain dehydrogenase; Provisional
Probab=34.52 E-value=1.7e+02 Score=26.60 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
.+++++. ++.|.+- ..+|+.|+++||+|+++..
T Consensus 6 ~~~ilIt--Gasg~iG--~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 6 SRRVLIT--GGSGGLG--RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCEEEEE--CCCChHH--HHHHHHHHHCCCeEEEEcC
Confidence 4565544 3344443 5889999999999988653
No 355
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=34.47 E-value=4.1e+02 Score=27.95 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEE
Q 010988 109 PLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISF 147 (496)
Q Consensus 109 ~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~ 147 (496)
.++++++. .+||++|.... +-.+|+.+|||++.+
T Consensus 428 ~l~~~l~~--~~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 428 HLRSLVFT--EPVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHhh--cCCCEEEECch---HHHHHHHcCCCEEEe
Confidence 45677766 69999998853 467899999999874
No 356
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=34.39 E-value=3.3e+02 Score=24.45 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEe
Q 010988 108 LPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFH 148 (496)
Q Consensus 108 ~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~ 148 (496)
++.++.++. .-+.+++-.+.......|+..|+|++.-.
T Consensus 71 e~a~~a~~a---GA~FivSP~~~~~v~~~~~~~~i~~iPG~ 108 (196)
T PF01081_consen 71 EQAEAAIAA---GAQFIVSPGFDPEVIEYAREYGIPYIPGV 108 (196)
T ss_dssp HHHHHHHHH---T-SEEEESS--HHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHc---CCCEEECCCCCHHHHHHHHHcCCcccCCc
Confidence 456666665 88999999888888889999999999733
No 357
>PRK08506 replicative DNA helicase; Provisional
Probab=34.18 E-value=5.5e+02 Score=26.62 Aligned_cols=42 Identities=5% Similarity=0.102 Sum_probs=34.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFK 53 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (496)
+++...|+.|-..-.+.+|...++.|+.|.|++.+-....+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 455666889999999999999988999999999886554443
No 358
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.13 E-value=72 Score=33.71 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=29.3
Q ss_pred CCEEEEEcC-------CCccCHHHHHH---HHHHHHhCCCeEEEEeCCc
Q 010988 9 QPHFVLFPF-------LAQGHMIPMID---IGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 9 ~~~il~~~~-------~~~GHi~p~l~---LA~~L~~rGH~Vt~~~~~~ 47 (496)
|.++++.+. +-.||+.+.++ +|+-++-+||+|.|++..+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtD 52 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTD 52 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 456666652 34899997664 6888888999999998754
No 359
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=33.95 E-value=55 Score=22.47 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhcCC
Q 010988 431 EDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIMHQP 486 (496)
Q Consensus 431 ~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 486 (496)
.+|...+..+|. .+..+-..++..+-.-+++=|+..+.++.=|.+++.+-
T Consensus 2 ~elt~~v~~lL~------qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 2 QELTAFVQNLLQ------QMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-------
T ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 468888999997 88888888888888888888888888888888887653
No 360
>PRK03094 hypothetical protein; Provisional
Probab=33.75 E-value=38 Score=25.39 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 010988 26 MIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
+..|.++|.++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457899999999999877553
No 361
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=33.72 E-value=69 Score=30.61 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=48.7
Q ss_pred CCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChh
Q 010988 293 NLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWN 372 (496)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~g 372 (496)
..+.+....+.+|+...+.+.||.+.++. . .. .+.++++...+-.+|.. +|-..-..
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~-g---a~-----------------rlL~~ld~~~~~~~pK~--~iGySDiT 101 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGY-G---AN-----------------RLLPYLDYDLIRANPKI--FVGYSDIT 101 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcC-C---HH-----------------HhhhhCCHHHHhhCCeE--EEEecHHH
Confidence 34456677899999999999999998886 1 11 22344555554455555 66666666
Q ss_pred hHHHHHHh--CCcEeccCCc
Q 010988 373 SSLEAISA--GVPMITWPLF 390 (496)
Q Consensus 373 s~~eal~~--GvP~v~~P~~ 390 (496)
+++-+++. |++.+-=|..
T Consensus 102 aL~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 102 ALHLALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHHHHHhcCceEEECccc
Confidence 66666654 6666555543
No 362
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=33.65 E-value=3.6e+02 Score=24.35 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVV 56 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (496)
+++...|+.|-..-.+.++..-+++|+.|.+++.+...+.+....
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~ 63 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYA 63 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 455555688888888888888878899999999987666555554
No 363
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=33.25 E-value=72 Score=30.00 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=30.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIV 43 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~ 43 (496)
|+|.+..=++-|-..-...||..|+++|++|.++
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 5788886578999999999999999999999988
No 364
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=33.21 E-value=58 Score=31.73 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
++||.++-.+++| .+||+.|++.||+|++-....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 4689999888888 689999999999999998763
No 365
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=33.17 E-value=38 Score=31.59 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCc
Q 010988 25 PMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 25 p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
-.-.|+++|+++||+|+++++..
T Consensus 21 v~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHhcCCeEEEEEccc
Confidence 36688999999999999999865
No 366
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.13 E-value=7.5 Score=34.25 Aligned_cols=117 Identities=10% Similarity=0.160 Sum_probs=55.7
Q ss_pred ccCHHHHHHHHHHH-HhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccc--cC---CCCCCCc------c
Q 010988 20 QGHMIPMIDIGRLL-AQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQE--AG---IPEGSEN------F 87 (496)
Q Consensus 20 ~GHi~p~l~LA~~L-~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~--~~---l~~~~~~------~ 87 (496)
.+.+.-.+..|+.| .+.|.+|.+.-.. ....+++. .++.++.++....+ .. ....... .
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~--------~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~ 86 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGG-TAELLRKH--------VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYP 86 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEES
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHh--------CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecc
Confidence 36677788999999 7889999877554 23333332 25666666654333 00 0110000 0
Q ss_pred cCCCchhhHHHHHHH---------HHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecch
Q 010988 88 DMLHSTDLLFNFFKS---------LTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFS 151 (496)
Q Consensus 88 ~~~~~~~~~~~~~~~---------~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~ 151 (496)
........+..++.. .+.+...+.++.+ .+.|+||.+.. ...+|+.+|+|++.+.+..
T Consensus 87 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 87 NIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp S-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred cccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 011111222222211 1122333444433 48999999953 4678999999999876543
No 367
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=33.07 E-value=5.3e+02 Score=26.07 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEE
Q 010988 109 PLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISF 147 (496)
Q Consensus 109 ~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~ 147 (496)
++.+.++. .+||++|.... ...+|+++|||++.+
T Consensus 347 e~~~~i~~--~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKE--KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhh--cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 45566677 68999999843 346789999999853
No 368
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.99 E-value=4.7e+02 Score=27.86 Aligned_cols=119 Identities=8% Similarity=0.030 Sum_probs=63.6
Q ss_pred EEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhC-CCcEEEeCcchhhhhhcccc
Q 010988 283 VVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVK-GRGILILGWAPQVLILSHPS 361 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~~l~~~~ 361 (496)
.-|++.|+.....-..-..|-.++...+.++|..++.+.. .- -..++..... .-++++.
T Consensus 412 ~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f-----~m--~~~EL~Ta~r~~lpv~~v------------- 471 (572)
T PRK08979 412 RRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSI-----QM--NIQELSTALQYDIPVKII------------- 471 (572)
T ss_pred CeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHh-----hc--cHHHHHHHHHcCCCeEEE-------------
Confidence 3455544444434445556777777778888888777651 10 0122222111 1233332
Q ss_pred ccccccCCChhhHHHH--HHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHH
Q 010988 362 IGGFLTHCGWNSSLEA--ISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINM 439 (496)
Q Consensus 362 ~~~~I~HGG~gs~~ea--l~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 439 (496)
++.+||+|.+... ..++-+.....+ ...++.++.. |..|+- ... --+.++|.+++++
T Consensus 472 ---V~NN~~y~~i~~~q~~~~~~~~~~~~~-~~~~d~~~~A-~a~G~~-~~~---------------v~~~~eL~~al~~ 530 (572)
T PRK08979 472 ---NLNNRFLGMVKQWQDMIYQGRHSHSYM-DSVPDFAKIA-EAYGHV-GIR---------------ISDPDELESGLEK 530 (572)
T ss_pred ---EEeCCccHHHHHHHHHHhCCcccccCC-CCCCCHHHHH-HHCCCe-EEE---------------ECCHHHHHHHHHH
Confidence 8899999977532 333433221111 1135667777 677652 111 2467888888888
Q ss_pred Hhc
Q 010988 440 LMN 442 (496)
Q Consensus 440 lL~ 442 (496)
.++
T Consensus 531 a~~ 533 (572)
T PRK08979 531 ALA 533 (572)
T ss_pred HHh
Confidence 875
No 369
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=32.99 E-value=3.3e+02 Score=23.66 Aligned_cols=88 Identities=9% Similarity=0.078 Sum_probs=46.8
Q ss_pred cceEEEcChhhhhHHHHHHHHhhcCCceEEeCcCcCCCcCCchhhhhCCCCcCChhhhccccCCCCCCeEEEEeeCCccC
Q 010988 214 SYGIIINTFEELESEYVKEYKKTKGGKVWCLGPVSLCNKQDIDKAERGKKAAIDVSECLNWLDSWPPNSVVYVCLGSICN 293 (496)
Q Consensus 214 ~~~~l~~s~~~le~~~~~~~~~~~~~~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI~vs~GS~~~ 293 (496)
....++-+-++.-..+...+.+.+ |++..+|-....-... ..+++.+.+....++ +|+|++|+=.+
T Consensus 47 ~~v~llG~~~~~~~~~~~~l~~~y-p~l~i~g~~~g~~~~~------------~~~~i~~~I~~~~pd-iv~vglG~PkQ 112 (171)
T cd06533 47 LRVFLLGAKPEVLEKAAERLRARY-PGLKIVGYHHGYFGPE------------EEEEIIERINASGAD-ILFVGLGAPKQ 112 (171)
T ss_pred CeEEEECCCHHHHHHHHHHHHHHC-CCcEEEEecCCCCChh------------hHHHHHHHHHHcCCC-EEEEECCCCHH
Confidence 345566665555555555676767 6777777322221110 133356666665443 99999998432
Q ss_pred CChhhHHHHHHHHHhCCCCeEEEEeCC
Q 010988 294 LTSSQMIELGLGLEASKKPFIWVIRGG 320 (496)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~i~~~~~~ 320 (496)
..+. .+-....+..++..++..
T Consensus 113 --E~~~---~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 113 --ELWI---ARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred --HHHH---HHHHHHCCCCEEEEecee
Confidence 1122 222233456666555553
No 370
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.94 E-value=4.5e+02 Score=25.20 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=35.5
Q ss_pred cEEEeCcchhh---hhhccccccccccCCChhhHHHHHHhCCcEeccCCccccchhHHHH
Q 010988 344 GILILGWAPQV---LILSHPSIGGFLTHCGWNSSLEAISAGVPMITWPLFGDQFCNEKLI 400 (496)
Q Consensus 344 nv~v~~~~pq~---~~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r~ 400 (496)
.|.+.+|+||+ .+|--|++ -+-. |=-|+..|..+|+|.+=-=+.-|....-+++
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflWHIYpQdentHl~KL 295 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLWHIYPQDENTHLAKL 295 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEEEecCCccccHHHHH
Confidence 56778999975 47877776 3333 5679999999999986433333333333444
No 371
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=32.88 E-value=31 Score=32.83 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=33.4
Q ss_pred CChhhHH--HHHHhCCcEeccCCccccchhHHHHHHHhhceEEe
Q 010988 369 CGWNSSL--EAISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRI 410 (496)
Q Consensus 369 GG~gs~~--eal~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l 410 (496)
||||+++ -|-.+||=++++-+...|..+++.-+...|+...+
T Consensus 81 CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v 124 (283)
T COG2230 81 CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNV 124 (283)
T ss_pred CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCccc
Confidence 6888654 56677999999999999999998832688988333
No 372
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=32.82 E-value=1.2e+02 Score=23.54 Aligned_cols=39 Identities=8% Similarity=0.186 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
++.||+++|..+.|--.-.-.+=+.+.++|.++.+-..+
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 567999999887553334456666667789988776665
No 373
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=32.71 E-value=83 Score=30.23 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHH
Q 010988 296 SSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSL 375 (496)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~ 375 (496)
.+....+.+.+++.+..+++...... .....-....+..++-..+++ +|+-||-||+.
T Consensus 20 ~e~~~~i~~~L~~~g~~v~v~~~~~~--------------------~~~~~~~~~~~~~~~~~~~d~--vi~~GGDGt~l 77 (291)
T PRK02155 20 AEPLESLAAFLAKRGFEVVFEADTAR--------------------NIGLTGYPALTPEEIGARADL--AVVLGGDGTML 77 (291)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhh--------------------hcCcccccccChhHhccCCCE--EEEECCcHHHH
Q ss_pred HHHHh----CCcEecc
Q 010988 376 EAISA----GVPMITW 387 (496)
Q Consensus 376 eal~~----GvP~v~~ 387 (496)
+++.. ++|++.+
T Consensus 78 ~~~~~~~~~~~pilGI 93 (291)
T PRK02155 78 GIGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHHhcCCCCCEEEE
No 374
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=32.70 E-value=2.6e+02 Score=28.30 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=25.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPAN 48 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~ 48 (496)
|||+++-.+..+ ..|++++++.|+.+++++.+.+
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQSPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhCCCccEEEEECCC
Confidence 588888877764 4678888888888777766643
No 375
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=32.65 E-value=95 Score=30.90 Aligned_cols=91 Identities=20% Similarity=0.198 Sum_probs=0.0
Q ss_pred CccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhh-----HHHHHHhCCCcEEEeCcchhhh---hhcccc
Q 010988 290 SICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLE-----EKFEERVKGRGILILGWAPQVL---ILSHPS 361 (496)
Q Consensus 290 S~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp-----~~~~~~~~~~nv~v~~~~pq~~---~l~~~~ 361 (496)
|.+.....-+..++++++..+.++.+.+..+. ....+..| ++ .+-....+.-.+.+.+|+||.+ +|-.|+
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~-~~~~~~~~-~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD 265 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGR-ALNSLAAW-LGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACD 265 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCc-cHHHHHHH-hccccccCccccccCCeEEEECCCCCHHHHHHHHHhCc
Q ss_pred ccccccCCChhhHHHHHHhCCcEe
Q 010988 362 IGGFLTHCGWNSSLEAISAGVPMI 385 (496)
Q Consensus 362 ~~~~I~HGG~gs~~eal~~GvP~v 385 (496)
+ -+-.|-= |+..|..+|+|.|
T Consensus 266 ~--NfVRGED-SfVRAqwAgkPFv 286 (374)
T PF10093_consen 266 F--NFVRGED-SFVRAQWAGKPFV 286 (374)
T ss_pred c--ceEecch-HHHHHHHhCCCce
No 376
>PRK05993 short chain dehydrogenase; Provisional
Probab=32.59 E-value=72 Score=30.09 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|+|.++++.. .|-+- ..+|+.|+++|++|+.+.-.
T Consensus 3 ~~k~vlItGa-sggiG--~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 3 MKRSILITGC-SSGIG--AYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCCEEEEeCC-CcHHH--HHHHHHHHHCCCEEEEEECC
Confidence 4466666643 23222 56899999999999887654
No 377
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=32.18 E-value=81 Score=28.56 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPAN 48 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~ 48 (496)
||++.++-.+-.| ..||..|++.||+|++......
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCCh
Confidence 4566665544443 5789999999999999976543
No 378
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=31.74 E-value=1.8e+02 Score=29.97 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=26.8
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 12 FVLFPFL-AQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 12 il~~~~~-~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
|++.... .-|-..=...|++.|+++|++|..+=+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 4444333 488899999999999999999998844
No 379
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=31.69 E-value=4.9e+02 Score=27.47 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=62.6
Q ss_pred ccCHHHHHHHH-HHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccc--cCC--CCCC-CcccCCCc-
Q 010988 20 QGHMIPMIDIG-RLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQE--AGI--PEGS-ENFDMLHS- 92 (496)
Q Consensus 20 ~GHi~p~l~LA-~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~--~~l--~~~~-~~~~~~~~- 92 (496)
.|++.-.+.+| +.+.+.|++|.+.-.. +.+.+++. ..+.++.|+....+ ..+ ...+ ....-...
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~~--------~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~ 106 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKSR--------LSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQ 106 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHHh--------CCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecC
Confidence 47777788888 4476779998866554 44455553 24666776644333 000 0000 01110111
Q ss_pred --hhhHHHHHHHHH------------hhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecc
Q 010988 93 --TDLLFNFFKSLT------------LLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGF 150 (496)
Q Consensus 93 --~~~~~~~~~~~~------------~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~ 150 (496)
......+...+. .....+.++ +. .++++||+|.. +...|+.+|++.+.+.+.
T Consensus 107 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l-~~--~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 107 DTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDL-RA--RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred cccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHH-HH--CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 112222333221 112223333 33 59999999953 457899999999998664
No 380
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=31.59 E-value=4.5e+02 Score=26.64 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEE
Q 010988 110 LENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISF 147 (496)
Q Consensus 110 l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~ 147 (496)
+.+.++. .+||+||.....- .+|+++|||++.+
T Consensus 350 ~~~~~~~--~~pdliig~s~~~---~~a~~lgip~~~~ 382 (415)
T cd01977 350 FFEILEM--LKPDIILTGPRVG---ELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHh--cCCCEEEecCccc---hhhhhcCCCEEec
Confidence 3344555 6899999885433 5899999999874
No 381
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=31.59 E-value=1.1e+02 Score=24.66 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=32.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
||++..-++.|-..-...+++.|+++|.+|.++-.++
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888899999999999999999999999887665
No 382
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=31.57 E-value=86 Score=29.08 Aligned_cols=39 Identities=15% Similarity=0.048 Sum_probs=28.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
+..++|+++.-.-.-=..-+-.....|+++||+|++++-
T Consensus 8 ~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 8 LDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred ccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 456788777654444445567777788999999999974
No 383
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=31.56 E-value=4.1e+02 Score=24.37 Aligned_cols=46 Identities=13% Similarity=-0.060 Sum_probs=34.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVV 56 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (496)
-+++...|+.|-..-.++++.+-+++|..|.|++.+.....+.+..
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~ 68 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNM 68 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHH
Confidence 3566666789999988888877668899999999887665554443
No 384
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=31.46 E-value=58 Score=35.68 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
-++||.|-..|+-|-.+-|+.=|++|.+.|.+|.+..-+.
T Consensus 21 GklkIf~G~apGVGKTyaML~~a~~~~~~G~DvviG~vEt 60 (890)
T COG2205 21 GKLKIFLGAAPGVGKTYAMLSEAQRLLAEGVDVVIGVVET 60 (890)
T ss_pred CceEEEeecCCCccHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 3589999999999999999999999999999999886653
No 385
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=31.42 E-value=1.6e+02 Score=28.01 Aligned_cols=88 Identities=15% Similarity=0.076 Sum_probs=52.8
Q ss_pred cccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcch
Q 010988 273 NWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAP 352 (496)
Q Consensus 273 ~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p 352 (496)
++|... +.++++++|+... ....+...|.+.+.+++...+.+. .. -
T Consensus 125 ~~L~~A--~rI~~~G~g~S~~----vA~~~~~~l~~ig~~~~~~~d~~~----------~~------------------~ 170 (281)
T COG1737 125 ELLAKA--RRIYFFGLGSSGL----VASDLAYKLMRIGLNVVALSDTHG----------QL------------------M 170 (281)
T ss_pred HHHHcC--CeEEEEEechhHH----HHHHHHHHHHHcCCceeEecchHH----------HH------------------H
Confidence 455443 3488888887654 344455666667877776544433 11 1
Q ss_pred hhhhhccccccccccCCChh-----hHHHHHHhCCcEeccCCccccc
Q 010988 353 QVLILSHPSIGGFLTHCGWN-----SSLEAISAGVPMITWPLFGDQF 394 (496)
Q Consensus 353 q~~~l~~~~~~~~I~HGG~g-----s~~eal~~GvP~v~~P~~~DQ~ 394 (496)
+...+...++=++|+|.|.. .+..|-..|+|+|.+-...+-+
T Consensus 171 ~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 171 QLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSP 217 (281)
T ss_pred HHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCc
Confidence 22233333333499999966 5556778999999986654443
No 386
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.38 E-value=1.2e+02 Score=25.85 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=50.1
Q ss_pred cCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhh
Q 010988 387 WPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATE 466 (496)
Q Consensus 387 ~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~ 466 (496)
.|....+-.+|+.++ +. -.-|+. -..+.|.+.+.+|+.|.. .-+..+.+++..+.++
T Consensus 78 yPWt~~~L~aa~el~-ee--~eeLs~---------------deke~~~~sl~dL~~d~P---kT~vA~~rfKk~~~K~-- 134 (158)
T PF10083_consen 78 YPWTENALEAANELI-EE--DEELSP---------------DEKEQFKESLPDLTKDTP---KTKVAATRFKKILSKA-- 134 (158)
T ss_pred CchHHHHHHHHHHHH-HH--hhcCCH---------------HHHHHHHhhhHHHhhcCC---ccHHHHHHHHHHHHHH--
Confidence 355566777777775 31 112222 356788899999987543 6677888888888876
Q ss_pred hCCChHHHHHHHHHHHhc
Q 010988 467 ETGSSSLMIKLLIQDIMH 484 (496)
Q Consensus 467 ~~g~~~~~~~~~~~~~~~ 484 (496)
|-.....+++++-++.+
T Consensus 135 -g~~v~~~~~dIlVdv~S 151 (158)
T PF10083_consen 135 -GSIVGDAIRDILVDVAS 151 (158)
T ss_pred -hHHHHHHHHHHHHHHHH
Confidence 66667788888877754
No 387
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=31.09 E-value=2.9e+02 Score=29.55 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=23.0
Q ss_pred ccccccccccCCChh------hHHHHHHhCCcEeccC
Q 010988 358 SHPSIGGFLTHCGWN------SSLEAISAGVPMITWP 388 (496)
Q Consensus 358 ~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (496)
.++.+ +++|.|-| ++.+|.+.++|+|++.
T Consensus 62 g~~gv--~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 62 GKVGV--CVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCCEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 34555 88888744 8889999999999884
No 388
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=30.91 E-value=3.5e+02 Score=23.33 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=29.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIV 43 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~ 43 (496)
-|.+++.++.|-....+.+|-+.+.+|++|.|+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 577888889999999999999999999999995
No 389
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=30.89 E-value=1.3e+02 Score=26.13 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=23.3
Q ss_pred ccccccccccCCChh------hHHHHHHhCCcEeccCCc
Q 010988 358 SHPSIGGFLTHCGWN------SSLEAISAGVPMITWPLF 390 (496)
Q Consensus 358 ~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~~ 390 (496)
.++.+ +++|.|-| ++.+|...++|+|++.-.
T Consensus 63 g~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 63 GRPGV--VIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp SSEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred ccceE--EEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 45555 88888744 788999999999998753
No 390
>PRK04148 hypothetical protein; Provisional
Probab=30.86 E-value=2.1e+02 Score=23.97 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
+.+|++.+..+ .| ..+|..|++.||+|+.+=..
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 34688888777 43 24688888999999977443
No 391
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=30.85 E-value=1.3e+02 Score=29.06 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
.+|||.|+-.+..| .++|+.|.++||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 35799998776666 578999999999999887653
No 392
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.76 E-value=89 Score=28.62 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
.+..++++.. +.|.+- ..+++.|.++||+|+.+.-..
T Consensus 3 ~~~~~vlItG--asg~iG--~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEGKVAIVTG--ASSGIG--EGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred cCCcEEEEEC--CCChHH--HHHHHHHHHCCCEEEEEeCCH
Confidence 4445665553 333333 578999999999988876553
No 393
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=30.73 E-value=80 Score=33.50 Aligned_cols=41 Identities=2% Similarity=-0.220 Sum_probs=28.0
Q ss_pred CeEEEEcCCCc---chHHHHHhcCCCeEEEecchHHHHHHHhhh
Q 010988 121 PSCIVSDMCYP---WTVDTAARFNIPRISFHGFSCFCLLCLYNL 161 (496)
Q Consensus 121 pDlVI~D~~~~---~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 161 (496)
-.-||+-..-| .++..++...+++.+++|..++.+..+..-
T Consensus 142 ~~~ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l~~ 185 (633)
T PF05693_consen 142 KPKVIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYLAA 185 (633)
T ss_dssp SEEEEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHHTT
T ss_pred CCcEEEEechHhHhHHHHHHhccCCCeeEEEEecccchhhHhhc
Confidence 45566554433 567788999999999999999987665443
No 394
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=30.70 E-value=90 Score=27.02 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=31.1
Q ss_pred CCEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLFPFL-AQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~-~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
||+|+=++.. ..|-..=+-.|.+.|.++|+.|..+=+.
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 4677666655 4999999999999999999999988554
No 395
>PRK04328 hypothetical protein; Provisional
Probab=30.69 E-value=4.4e+02 Score=24.45 Aligned_cols=45 Identities=13% Similarity=-0.068 Sum_probs=33.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
-+++...|+.|-..=.++++.+-+++|+.+.+++.+...+.+...
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~ 69 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRN 69 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHH
Confidence 345566678999888888877767889999999987665555444
No 396
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=30.59 E-value=4e+02 Score=24.36 Aligned_cols=105 Identities=14% Similarity=0.199 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCc-cCHHH---HHHHHHHHHhCCCeEEEEeCCcch-hhHHHHHHhhhcCCCCeEEEEeeCCccccCCCC
Q 010988 8 QQPHFVLFPFLAQ-GHMIP---MIDIGRLLAQNGAAITIVTTPANA-ARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPE 82 (496)
Q Consensus 8 ~~~~il~~~~~~~-GHi~p---~l~LA~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~ 82 (496)
++..|+|.+..+. .--.| ...|++.|.++|.+|.++..+... ....+.... +. ..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~------~~--------------~~ 163 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA------GL--------------QN 163 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT------TH--------------TT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH------hc--------------cc
Confidence 3456777776542 22223 689999999999888888887652 111111110 00 00
Q ss_pred CCCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecchH
Q 010988 83 GSENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFSC 152 (496)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~~ 152 (496)
........ .-..++..+++ .-|++|+- ..+..-+|..+|+|.+.++....
T Consensus 164 ~~~~~~~~--------------~~l~e~~ali~----~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~t~ 213 (247)
T PF01075_consen 164 PVINLAGK--------------TSLRELAALIS----RADLVIGN--DTGPMHLAAALGTPTVALFGPTN 213 (247)
T ss_dssp TTEEETTT--------------S-HHHHHHHHH----TSSEEEEE--SSHHHHHHHHTT--EEEEESSS-
T ss_pred ceEeecCC--------------CCHHHHHHHHh----cCCEEEec--CChHHHHHHHHhCCEEEEecCCC
Confidence 00000000 01223445554 48999865 34567799999999999876653
No 397
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=30.27 E-value=2.1e+02 Score=25.92 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=23.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
|.++++ ++.|.+- ..+|+.|.++|++|.++....
T Consensus 3 k~vlIt-G~s~~iG--~~la~~l~~~g~~vi~~~r~~ 36 (245)
T PRK12824 3 KIALVT-GAKRGIG--SAIARELLNDGYRVIATYFSG 36 (245)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHcCCEEEEEeCCc
Confidence 455555 3444444 458999999999998886653
No 398
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=30.25 E-value=1.9e+02 Score=28.08 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=26.2
Q ss_pred hhccccccccccCCChhhHHHHHHhCCcEeccC
Q 010988 356 ILSHPSIGGFLTHCGWNSSLEAISAGVPMITWP 388 (496)
Q Consensus 356 ~l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P 388 (496)
++..-.-+++|+.|+..+..-|-..|+|.+.+-
T Consensus 88 ~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 88 IIREYNPDLIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred HHHhcCCCEEEECCchHHHHHHHhcCCCEEEEe
Confidence 334344455999999999999999999999664
No 399
>PRK09134 short chain dehydrogenase; Provisional
Probab=30.22 E-value=2.8e+02 Score=25.55 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=26.0
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 5 GSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 5 ~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|.+.+.|.++++. +.|.+- ..+++.|.++|++|.++...
T Consensus 4 ~~~~~~k~vlItG-as~giG--~~la~~l~~~g~~v~~~~~~ 42 (258)
T PRK09134 4 MSMAAPRAALVTG-AARRIG--RAIALDLAAHGFDVAVHYNR 42 (258)
T ss_pred CcCCCCCEEEEeC-CCcHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 3345556666663 344444 47899999999999876543
No 400
>PRK10037 cell division protein; Provisional
Probab=30.19 E-value=89 Score=29.10 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=29.4
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 11 HFVLFPF-LAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 11 ~il~~~~-~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
.|.+... ++-|-..-...||..|+++|++|.++=.+
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 4555555 67999999999999999999999988443
No 401
>PRK06756 flavodoxin; Provisional
Probab=30.14 E-value=96 Score=26.09 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCccCHHHH-HHHHHHHHhCCCeEEEEeC
Q 010988 9 QPHFVLFPFLAQGHMIPM-IDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~-l~LA~~L~~rGH~Vt~~~~ 45 (496)
||||+++-....||..-+ ..|++.|.++|++|.+.-.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 468877776679998885 4568889888999987643
No 402
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=30.13 E-value=4.6e+02 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=31.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANA 49 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (496)
+++...|+.|-..-.++++...+++|..|.|++.+...
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 45555678999999999999998899999999987433
No 403
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.07 E-value=93 Score=28.86 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=24.0
Q ss_pred CEEEEEcCCCc-cCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 10 PHFVLFPFLAQ-GHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 10 ~~il~~~~~~~-GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
.|+++++..+. +-+- .++|++|+++|++|.+..-
T Consensus 7 ~k~~lItGas~~~gIG--~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 7 GKKIVVMGVANKRSIA--WGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CCEEEEeCCCCCCchH--HHHHHHHHHCCCEEEEecC
Confidence 36777776542 2222 7899999999999987643
No 404
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=30.06 E-value=86 Score=32.42 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTV 55 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (496)
+..||++...++.+ .+=...|.+.|.++|++|.++.++....++.+.
T Consensus 69 ~~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 69 ASKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 35678777655544 447889999999999999999999887777654
No 405
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=29.97 E-value=73 Score=28.04 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANA 49 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (496)
...++|+..++.|-..=..++|+++.++|+.|.|+..+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 45788888888998888999999999999999999876433
No 406
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=29.90 E-value=2.5e+02 Score=27.11 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
+.|.++++.++ |-+- ..++++|+++|++|+++.-
T Consensus 5 ~~k~vlVTGas-~gIG--~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 5 AKGTVIITGAS-SGVG--LYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CCCEEEEEcCC-ChHH--HHHHHHHHHCCCEEEEEEC
Confidence 34566666443 3333 5689999999999988764
No 407
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=29.74 E-value=73 Score=27.61 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAA 50 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (496)
..+|.++-++++||- -|.-|++.|++|++...+....
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s 40 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSAS 40 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHH
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcC
Confidence 468999999999985 5788999999999998776533
No 408
>PRK12744 short chain dehydrogenase; Provisional
Probab=29.68 E-value=2.7e+02 Score=25.60 Aligned_cols=32 Identities=28% Similarity=0.138 Sum_probs=20.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
|.++++..+ |-+ =..+|+.|+++|++|.+++.
T Consensus 9 k~vlItGa~-~gI--G~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 9 KVVLIAGGA-KNL--GGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred cEEEEECCC-chH--HHHHHHHHHHCCCcEEEEec
Confidence 455555433 222 25689999999999776653
No 409
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=29.67 E-value=2.8e+02 Score=25.21 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=22.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|.++++ ++.|.+ =..|++.|.++|++|+.+...
T Consensus 7 ~~ilIt-Gasg~i--G~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 7 RVALVT-GAARGI--GRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CEEEEc-CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 333444 345555 467889999999999887654
No 410
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.59 E-value=64 Score=30.85 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
+..||.++-.+..| ..+|..|+++||+|+++...
T Consensus 2 ~~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 2 DIKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred CccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 34689988777666 56888999999999998754
No 411
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=29.48 E-value=2.4e+02 Score=29.93 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=22.7
Q ss_pred cccccccccCCChh------hHHHHHHhCCcEeccC
Q 010988 359 HPSIGGFLTHCGWN------SSLEAISAGVPMITWP 388 (496)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (496)
++.+ +++|.|-| ++.+|.+.++|+|++-
T Consensus 64 ~~gv--~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 64 KVGV--VLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4555 88888754 7889999999999984
No 412
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=29.47 E-value=1.3e+02 Score=22.94 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 010988 428 VKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKL 477 (496)
Q Consensus 428 ~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~ 477 (496)
-+.+++.+-+..+++ +++.+.+..+.+-.++++. +|-++..|.+
T Consensus 14 ~~~ee~~~f~~dL~T-~~E~~~l~~R~~va~~lL~-----~g~syreIa~ 57 (87)
T PF01371_consen 14 KDEEECYDFFEDLCT-PDELEALAQRWQVAKELLD-----EGKSYREIAE 57 (87)
T ss_dssp HCHHCHHHHHHHHSS-HHHHHHHHHHHHHHHHHHH-----TTSSHHHHHH
T ss_pred CCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHH-----CCCCHHHHHH
Confidence 467778888888888 6677777777776666665 5555555544
No 413
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=29.25 E-value=1.1e+02 Score=31.55 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=34.5
Q ss_pred CEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010988 10 PHFVLFPFL---AQGHMIPMIDIGRLLAQNGAAITIVTTPANAA 50 (496)
Q Consensus 10 ~~il~~~~~---~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (496)
+|.+|++.+ +.|-=.-...||..|.+||++||+.=.++|.+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlN 44 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLN 44 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEeccccee
Confidence 478888876 47777889999999999999999998877665
No 414
>PLN02470 acetolactate synthase
Probab=29.18 E-value=5.3e+02 Score=27.57 Aligned_cols=120 Identities=10% Similarity=-0.002 Sum_probs=63.4
Q ss_pred EEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhC-CCcEEEeCcchhhhhhcccc
Q 010988 283 VVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVK-GRGILILGWAPQVLILSHPS 361 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~~l~~~~ 361 (496)
.-|++.|+.....-..-..|-.++...+.+++...+.+.... -..++..... .-++++.
T Consensus 417 ~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m-------~~~eL~Ta~~~~l~v~iv------------- 476 (585)
T PLN02470 417 RRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIM-------NIQELATIHVENLPVKIM------------- 476 (585)
T ss_pred CeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhc-------cHHHHHHHHHhCCCeEEE-------------
Confidence 334444333333334555677777778889888887775110 0122222211 1245443
Q ss_pred ccccccCCChhhHHHH--HHhCCcEec----cCCccc--cchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHH
Q 010988 362 IGGFLTHCGWNSSLEA--ISAGVPMIT----WPLFGD--QFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDV 433 (496)
Q Consensus 362 ~~~~I~HGG~gs~~ea--l~~GvP~v~----~P~~~D--Q~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 433 (496)
++..||+|.+.+. ..++-+... .|...+ .++.++.+ |..|+- ... --+.++|
T Consensus 477 ---V~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA-~a~G~~-~~~---------------v~~~~el 536 (585)
T PLN02470 477 ---VLNNQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFA-EGCKIP-AAR---------------VTRKSDL 536 (585)
T ss_pred ---EEeCCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHH-HHCCCe-EEE---------------ECCHHHH
Confidence 8999999877543 333332111 111111 14566666 677652 111 2468889
Q ss_pred HHHHHHHhc
Q 010988 434 VKAINMLMN 442 (496)
Q Consensus 434 ~~~i~~lL~ 442 (496)
.+++++.++
T Consensus 537 ~~al~~a~~ 545 (585)
T PLN02470 537 REAIQKMLD 545 (585)
T ss_pred HHHHHHHHh
Confidence 888888764
No 415
>PRK13236 nitrogenase reductase; Reviewed
Probab=29.00 E-value=1.1e+02 Score=29.48 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=30.3
Q ss_pred CCEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLF-PFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~-~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
.||++-+ .=++-|-..-...||..|+++|++|.++=.+
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 3465544 3367999999999999999999999999433
No 416
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=28.88 E-value=1.1e+02 Score=25.59 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=32.7
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 010988 13 VLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFK 53 (496)
Q Consensus 13 l~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (496)
.++.++..--+.|..-++...+..|++|+++.+.-....++
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~ 47 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALR 47 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhh
Confidence 34455779999999999999999999999999864444333
No 417
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=28.72 E-value=1.4e+02 Score=23.80 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVT 44 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~ 44 (496)
++.||+++|..+.|--.-.-.+-++..+.|.++.+-.
T Consensus 2 ~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 2 EKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3569999999887766655566666677888877644
No 418
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=28.65 E-value=50 Score=24.80 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 010988 26 MIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
+..+.++|.++||+|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 5678999999999999887664
No 419
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=28.51 E-value=98 Score=26.65 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=27.7
Q ss_pred CEEEEEcCCCccCHHHH-HHHHHHHHhCCCeEEEEeC
Q 010988 10 PHFVLFPFLAQGHMIPM-IDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~-l~LA~~L~~rGH~Vt~~~~ 45 (496)
||+|++=..-.|...=. -.||.+|.++||+|.+.-.
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeeh
Confidence 57777776778887764 4579999999999997643
No 420
>PRK08322 acetolactate synthase; Reviewed
Probab=28.45 E-value=2.2e+02 Score=30.12 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=22.7
Q ss_pred cccccccccCCChh------hHHHHHHhCCcEeccC
Q 010988 359 HPSIGGFLTHCGWN------SSLEAISAGVPMITWP 388 (496)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (496)
++.+ +++|.|-| ++.+|...++|+|++.
T Consensus 63 ~~gv--~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGV--CLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEE--EEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 4555 88888754 8889999999999985
No 421
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.39 E-value=5.3e+02 Score=24.72 Aligned_cols=103 Identities=20% Similarity=0.183 Sum_probs=65.2
Q ss_pred HHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhhHHHHHH
Q 010988 300 IELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNSSLEAIS 379 (496)
Q Consensus 300 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs~~eal~ 379 (496)
..+++.++..+..+++..+-.. ++++.+-......-+=+ ||++ .=...|.+....|+.
T Consensus 159 ~~~~~~l~~~~~Dlivlagym~---------il~~~~l~~~~~~iiNi-----------HpSl--LP~f~G~~~~~~ai~ 216 (289)
T PRK13010 159 AQILDLIETSGAELVVLARYMQ---------VLSDDLSRKLSGRAINI-----------HHSF--LPGFKGARPYHQAHA 216 (289)
T ss_pred HHHHHHHHHhCCCEEEEehhhh---------hCCHHHHhhccCCceee-----------Cccc--CCCCCCCCHHHHHHH
Confidence 3566777777788887776654 15554433221111111 4554 445578999999999
Q ss_pred hCCcEeccCCc--cccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHHh
Q 010988 380 AGVPMITWPLF--GDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINMLM 441 (496)
Q Consensus 380 ~GvP~v~~P~~--~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lL 441 (496)
+|+...++-.+ .+..+.+..+. + --+.+..+ -|.++|.+.+.++-
T Consensus 217 ~G~k~tG~TvH~v~~~lD~GpII~-Q--~~v~V~~~--------------dt~e~L~~r~~~~E 263 (289)
T PRK13010 217 RGVKLIGATAHFVTDDLDEGPIIE-Q--DVERVDHS--------------YSPEDLVAKGRDVE 263 (289)
T ss_pred cCCCeEEEEEEEEcCCCCCCCceE-E--EEEEcCCC--------------CCHHHHHHHHHHHH
Confidence 99999777654 45666776663 2 23344443 58899999888764
No 422
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=28.35 E-value=60 Score=33.47 Aligned_cols=33 Identities=12% Similarity=0.013 Sum_probs=25.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
|||+|+.-+-- -++-|.+|+++||+||++-..+
T Consensus 1 ~rVai~GaG~A-----gL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLA-----GLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHH-----HHHHHHHHHhCCCceEEEeccC
Confidence 46777654433 3778999999999999997764
No 423
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.27 E-value=70 Score=22.91 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCc
Q 010988 27 IDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 27 l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
+..|..|+++|++|+++-...
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567889999999999997653
No 424
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.23 E-value=2.8e+02 Score=28.34 Aligned_cols=43 Identities=9% Similarity=0.103 Sum_probs=33.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHH-HhCCCeEEEEeCCcchhhHHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLL-AQNGAAITIVTTPANAARFKT 54 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L-~~rGH~Vt~~~~~~~~~~~~~ 54 (496)
++|+-.++-|-..-...||..+ ..+|+.|.+++.+.+......
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~e 269 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIE 269 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHH
Confidence 4555556799999999999876 678999999998876554333
No 425
>PRK10818 cell division inhibitor MinD; Provisional
Probab=28.21 E-value=96 Score=29.17 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=30.6
Q ss_pred CEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 10 PHFVLFPF--LAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 10 ~~il~~~~--~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
+|++.+.. ++-|=..-...||..|+++|++|.++=.+.
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 46644444 679999999999999999999998885554
No 426
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=28.20 E-value=2.4e+02 Score=23.67 Aligned_cols=38 Identities=24% Similarity=0.180 Sum_probs=29.5
Q ss_pred CeEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeC
Q 010988 281 NSVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRG 319 (496)
Q Consensus 281 ~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 319 (496)
..+|++++||......+.+..+++.+. .+.++++....
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 359999999998877788888888774 36788776544
No 427
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=28.17 E-value=2.6e+02 Score=25.72 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=24.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
|.++++ ++.|.+- ..+++.|+++|++|+++....
T Consensus 16 k~vlIt-Gas~gIG--~~ia~~l~~~G~~v~~~~~~~ 49 (258)
T PRK06935 16 KVAIVT-GGNTGLG--QGYAVALAKAGADIIITTHGT 49 (258)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeCCc
Confidence 555555 4445554 788999999999999887653
No 428
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=28.16 E-value=3.5e+02 Score=24.23 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=71.0
Q ss_pred EEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccc
Q 010988 283 VVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSI 362 (496)
Q Consensus 283 vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~ 362 (496)
+.++....+.. ...+-.++.+.+...+..+|+..|.-. +|.+.|-.+....-+= -||++
T Consensus 53 t~~~~~k~~~~-r~~~d~~l~~~l~~~~~dlvvLAGyMr---------IL~~~fl~~~~grIlN-----------IHPSL 111 (200)
T COG0299 53 TVVLDRKEFPS-REAFDRALVEALDEYGPDLVVLAGYMR---------ILGPEFLSRFEGRILN-----------IHPSL 111 (200)
T ss_pred EEEeccccCCC-HHHHHHHHHHHHHhcCCCEEEEcchHH---------HcCHHHHHHhhcceEe-----------cCccc
Confidence 45554444431 233445688889888888887665543 0333333322221111 28888
Q ss_pred cccccCCChhhHHHHHHhCCcEeccCCc--cccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHHHH
Q 010988 363 GGFLTHCGWNSSLEAISAGVPMITWPLF--GDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAINML 440 (496)
Q Consensus 363 ~~~I~HGG~gs~~eal~~GvP~v~~P~~--~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 440 (496)
.=.++|..+..+|+.+|+..-++-++ .+..+-+-.+. ...+-+.. .-|.+.|.+.|.+.
T Consensus 112 --LP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~---Q~~Vpv~~--------------~Dt~etl~~RV~~~ 172 (200)
T COG0299 112 --LPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIA---QAAVPVLP--------------GDTAETLEARVLEQ 172 (200)
T ss_pred --ccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEE---EEeeeecC--------------CCCHHHHHHHHHHH
Confidence 88999999999999999998555543 24444444442 22333333 35889999888764
No 429
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.00 E-value=38 Score=32.07 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=22.6
Q ss_pred ccccccCCChhhHHHHHH------hCCcEeccCC
Q 010988 362 IGGFLTHCGWNSSLEAIS------AGVPMITWPL 389 (496)
Q Consensus 362 ~~~~I~HGG~gs~~eal~------~GvP~v~~P~ 389 (496)
++++|+-||-||++.++. .++|++.+-.
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 345999999999999976 4788887764
No 430
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=27.94 E-value=1.2e+02 Score=28.45 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=42.2
Q ss_pred cCHHHHHHHHHHHh--cCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 010988 428 VKKEDVVKAINMLM--NEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDI 482 (496)
Q Consensus 428 ~~~~~l~~~i~~lL--~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 482 (496)
.+.+.+.++|.++| .|.+.++..+.+-+++.+.++..-...||+..+|+-|-+.|
T Consensus 82 e~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkfqr~~~DTGS~EVQIAiLTeRI 138 (302)
T PTZ00119 82 DDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRPFDTGSAPVQIGCLTEKI 138 (302)
T ss_pred cchhhhCHHHHHHhccccCChHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 45667788888886 46666677777778888888766677899999998887766
No 431
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=27.92 E-value=2.3e+02 Score=30.24 Aligned_cols=29 Identities=14% Similarity=0.454 Sum_probs=23.2
Q ss_pred ccccccccccCCChh------hHHHHHHhCCcEeccC
Q 010988 358 SHPSIGGFLTHCGWN------SSLEAISAGVPMITWP 388 (496)
Q Consensus 358 ~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (496)
.++.+ +++|.|-| ++.+|...++|+|++-
T Consensus 77 g~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 77 GKPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34555 88888855 6889999999999884
No 432
>PRK08589 short chain dehydrogenase; Validated
Probab=27.87 E-value=3e+02 Score=25.67 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=23.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|.++++..+ |.+ =..+|+.|+++|++|+++...
T Consensus 7 k~vlItGas-~gI--G~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 7 KVAVITGAS-TGI--GQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEECCC-chH--HHHHHHHHHHCCCEEEEEeCc
Confidence 555665433 333 268899999999999988654
No 433
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=27.80 E-value=94 Score=28.02 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=28.9
Q ss_pred CEEEEEcCCCcc--CHHHHHHHHHHHHhC---CCeEEEEeCCcchhhHHH
Q 010988 10 PHFVLFPFLAQG--HMIPMIDIGRLLAQN---GAAITIVTTPANAARFKT 54 (496)
Q Consensus 10 ~~il~~~~~~~G--Hi~p~l~LA~~L~~r---GH~Vt~~~~~~~~~~~~~ 54 (496)
|||++..|+-+| -.||...+++.|.++ |++|.....+...+.+.+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~~~~~~v~~~~lPV~~~~~~~ 50 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPGELIGGAEVHTRELPVSYEKAFE 50 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTTSEETTEEEEEEEE-SSHHHHHH
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCCCcCCCceEEEEEecCchHhHHH
Confidence 588888875433 479999999999854 677777766654443433
No 434
>PRK09072 short chain dehydrogenase; Provisional
Probab=27.76 E-value=1e+02 Score=28.63 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 6 SSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 6 ~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
+++..++++. ++.|.+- ..+++.|+++|++|+++.-.
T Consensus 2 ~~~~~~vlIt--G~s~~iG--~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 2 DLKDKRVLLT--GASGGIG--QALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CCCCCEEEEE--CCCchHH--HHHHHHHHHCCCEEEEEECC
Confidence 3444555554 3333333 67899999999999988754
No 435
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=27.74 E-value=73 Score=29.26 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=25.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
|+++++..+-.| ..+|+.|.+.||+|+.+-...
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCH
Confidence 466666655544 578999999999999887653
No 436
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.66 E-value=5.8e+02 Score=24.86 Aligned_cols=101 Identities=18% Similarity=0.291 Sum_probs=59.7
Q ss_pred CCEEEEEcCCCc-----cCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCC
Q 010988 9 QPHFVLFPFLAQ-----GHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEG 83 (496)
Q Consensus 9 ~~~il~~~~~~~-----GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~ 83 (496)
+..|+|.|..+. --..-+..|++.|.++|.+|.++.++...+..+...... ..... + .+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~-----~~~~~-l----------~~ 238 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGL-----PNAVI-L----------AG 238 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhc-----CCccc-c----------CC
Confidence 357777776233 123458899999999999999888884444433332111 00000 0 00
Q ss_pred CCcccCCCchhhHHHHHHHHHhhhHHHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEecch
Q 010988 84 SENFDMLHSTDLLFNFFKSLTLLQLPLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFHGFS 151 (496)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~~~~ 151 (496)
. .-..++..+++ .-|++|+- ..+..-+|..+|.|.|.++..+
T Consensus 239 k--------------------~sL~e~~~li~----~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 239 K--------------------TSLEELAALIA----GADLVIGN--DSGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred C--------------------CCHHHHHHHHh----cCCEEEcc--CChHHHHHHHcCCCEEEEECCC
Confidence 0 01223344443 57888865 3456779999999999987554
No 437
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=27.66 E-value=93 Score=30.18 Aligned_cols=73 Identities=21% Similarity=0.157 Sum_probs=46.0
Q ss_pred CChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhCCCcEEEeCcchhhhhhccccccccccCCChhh
Q 010988 294 LTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVKGRGILILGWAPQVLILSHPSIGGFLTHCGWNS 373 (496)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~~l~~~~~~~~I~HGG~gs 373 (496)
.+.+....+.+|+...+.+.||.+.++. . . ..+.++++...+-.+|.. ||-..-..+
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~-g---~-----------------~rlL~~lD~~~i~~~PK~--fiGySDiTa 106 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGD-D---S-----------------NELLPYLDYELIKKNPKI--FIGYSDITA 106 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCccc-C---H-----------------hhhhhhcCHHHHhhCCCE--EEeccHHHH
Confidence 4455677899999999999999998886 1 1 123345555555555544 666666666
Q ss_pred HHHHHH--hCCcEeccCC
Q 010988 374 SLEAIS--AGVPMITWPL 389 (496)
Q Consensus 374 ~~eal~--~GvP~v~~P~ 389 (496)
++-+++ +|.+.+-=|.
T Consensus 107 L~~al~~~~g~~t~hGp~ 124 (308)
T cd07062 107 LHLAIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHHHHhcCCeEEECcc
Confidence 666663 2555444444
No 438
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=27.64 E-value=1.9e+02 Score=29.29 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=22.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEe
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQN-GAAITIVT 44 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~r-GH~Vt~~~ 44 (496)
|||+++..++..| +|++.|.+. |+.+.++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~ 31 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVA 31 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEe
Confidence 5999999887776 599999886 54444443
No 439
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=27.52 E-value=2.5e+02 Score=26.00 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=22.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|.++++. +.|.+ =..+++.|+++||+|+++...
T Consensus 11 k~~lItG-a~~~i--G~~ia~~l~~~G~~vv~~~~~ 43 (265)
T PRK07097 11 KIALITG-ASYGI--GFAIAKAYAKAGATIVFNDIN 43 (265)
T ss_pred CEEEEeC-CCchH--HHHHHHHHHHCCCeEEEEeCC
Confidence 4555553 33333 268899999999999877443
No 440
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=27.49 E-value=87 Score=28.15 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIV 43 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~ 43 (496)
.+.++|+++.++..| ..+|+.|.+.||+|++.
T Consensus 26 l~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 26 LEGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 456788888776444 57899999999999944
No 441
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=27.43 E-value=5.7e+02 Score=24.68 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=23.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|||+|+..+. -.+...+.|.++||+|..+.+.
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEECC
Confidence 5888885443 3466778888889998877653
No 442
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=27.34 E-value=1e+02 Score=26.48 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 8 QQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 8 ~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
+..+|+++..+..| ...++.|.+.||+||++.+.
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 45678887655443 67899999999999999654
No 443
>PRK13604 luxD acyl transferase; Provisional
Probab=27.31 E-value=1.2e+02 Score=29.37 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIV 43 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~ 43 (496)
+-+.++++.+..++-.-+..+|+.|.++|+.|..+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 34566677676777666999999999999999865
No 444
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=27.16 E-value=2.4e+02 Score=25.66 Aligned_cols=33 Identities=18% Similarity=0.051 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
+|.++++.. .|-+- ..+++.|+++|++|.+...
T Consensus 2 ~k~ilItGa-s~giG--~~la~~l~~~g~~v~~~~~ 34 (248)
T PRK06947 2 RKVVLITGA-SRGIG--RATAVLAAARGWSVGINYA 34 (248)
T ss_pred CcEEEEeCC-CCcHH--HHHHHHHHHCCCEEEEEeC
Confidence 455555543 33333 5689999999999987643
No 445
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.11 E-value=76 Score=32.53 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 7 SQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 7 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
++..+++++. .|. .-+ .+|+.|+++|++|+++....
T Consensus 3 ~~~k~v~iiG---~g~-~G~-~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVG---AGV-SGL-ALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEEC---CCH-HHH-HHHHHHHHCCCEEEEEeCCc
Confidence 4556776664 333 333 89999999999999886653
No 446
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=27.05 E-value=2.7e+02 Score=26.01 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=22.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|.++++..+ |.+ =..+++.|+++|++|+++...
T Consensus 11 k~vlVtGas-~gi--G~~ia~~l~~~G~~V~~~~r~ 43 (278)
T PRK08277 11 KVAVITGGG-GVL--GGAMAKELARAGAKVAILDRN 43 (278)
T ss_pred CEEEEeCCC-chH--HHHHHHHHHHCCCEEEEEeCC
Confidence 455555443 222 278899999999999887653
No 447
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=27.02 E-value=4.1e+02 Score=25.30 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCcchh
Q 010988 27 IDIGRLLAQNGAAITIVTTPANAA 50 (496)
Q Consensus 27 l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (496)
.++|..++++|++|.++...+..+
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 468889999999999998876543
No 448
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=26.99 E-value=3.6e+02 Score=28.63 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=23.2
Q ss_pred ccccccccccCCChh------hHHHHHHhCCcEeccC
Q 010988 358 SHPSIGGFLTHCGWN------SSLEAISAGVPMITWP 388 (496)
Q Consensus 358 ~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (496)
.++.+ +++|.|-| ++.+|.+.++|+|++-
T Consensus 70 g~~gv--~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 70 GRPGI--CFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CCCEE--EEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34555 88888855 7889999999999884
No 449
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=26.88 E-value=3.2e+02 Score=26.80 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=28.3
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 16 PFLAQGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 16 ~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
+.++.|-.--.+.||++|.+||..|-++.-.+
T Consensus 56 tvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 56 TVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred EECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 45789999999999999999999999987664
No 450
>PRK06835 DNA replication protein DnaC; Validated
Probab=26.70 E-value=93 Score=30.52 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=34.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARF 52 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (496)
..++|+..++.|=..=+.+||++|.++|+.|.+++.......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 5677777778888888889999999999999999887544433
No 451
>CHL00175 minD septum-site determining protein; Validated
Probab=26.63 E-value=1.2e+02 Score=28.65 Aligned_cols=40 Identities=10% Similarity=0.247 Sum_probs=32.4
Q ss_pred CCCCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 7 SQQPHFVLFPF--LAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 7 ~~~~~il~~~~--~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
.+|+|++.+.. |+-|=..-...||..|+++|++|.++=.+
T Consensus 12 ~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 12 ATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 34667766665 57899999999999999999999888444
No 452
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=26.61 E-value=99 Score=28.84 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=30.3
Q ss_pred CEEEEEc-C-CCccCHHHHHHHHHHHH-hCCCeEEEEeCCcc
Q 010988 10 PHFVLFP-F-LAQGHMIPMIDIGRLLA-QNGAAITIVTTPAN 48 (496)
Q Consensus 10 ~~il~~~-~-~~~GHi~p~l~LA~~L~-~rGH~Vt~~~~~~~ 48 (496)
|+++.+. . |+-|-..-.+.||..|+ .+||+|.++=.++.
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ 43 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQ 43 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4544444 3 78999999999999999 66799999965544
No 453
>PRK07109 short chain dehydrogenase; Provisional
Probab=26.51 E-value=3.4e+02 Score=26.46 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=22.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|+++++. +.|-+- ..+++.|+++|++|+++.-.
T Consensus 9 k~vlITG-as~gIG--~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 9 QVVVITG-ASAGVG--RATARAFARRGAKVVLLARG 41 (334)
T ss_pred CEEEEEC-CCCHHH--HHHHHHHHHCCCEEEEEECC
Confidence 4555553 333332 56789999999999887643
No 454
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=26.47 E-value=1.8e+02 Score=30.45 Aligned_cols=46 Identities=7% Similarity=0.060 Sum_probs=36.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVV 56 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (496)
-+++...++.|-..=+..++.+.+.+|..|.+++.+...+.+....
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~ 320 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNA 320 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH
Confidence 3455556778999999999999999999999999887666555543
No 455
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=26.46 E-value=1.8e+02 Score=30.90 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=22.8
Q ss_pred cccccccccCCChh------hHHHHHHhCCcEeccCC
Q 010988 359 HPSIGGFLTHCGWN------SSLEAISAGVPMITWPL 389 (496)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 389 (496)
++.+ ++.|.|-| ++.||-+.++|||++.-
T Consensus 72 ~~~v--~~vt~GpG~~N~l~~i~~A~~~~~Pvl~IsG 106 (568)
T PRK07449 72 RPVA--VIVTSGTAVANLYPAVIEAGLTGVPLIVLTA 106 (568)
T ss_pred CCEE--EEECCccHHHhhhHHHHHHhhcCCcEEEEEC
Confidence 4444 78887744 88899999999999953
No 456
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=26.39 E-value=3.5e+02 Score=28.25 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEe
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFKTVVARAMQSGLPLQLIEI 71 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i 71 (496)
|+++++...- -.-++.+|+.|.+.|+++. .+......+++. ++.+..+
T Consensus 4 ~~~aLISVsD----K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e~---------GI~v~~V 51 (513)
T PRK00881 4 IKRALISVSD----KTGIVEFAKALVELGVEIL--STGGTAKLLAEA---------GIPVTEV 51 (513)
T ss_pred cCEEEEEEeC----cccHHHHHHHHHHCCCEEE--EcchHHHHHHHC---------CCeeEEe
Confidence 3455554432 4558899999999999984 555555556553 6776666
No 457
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=26.36 E-value=7.3e+02 Score=26.49 Aligned_cols=120 Identities=10% Similarity=0.118 Sum_probs=61.4
Q ss_pred eEEEEeeCCccCCChhhHHHHHHHHHhCCCCeEEEEeCCCCCchhhhhhhhhHHHHHHhC-CCcEEEeCcchhhhhhccc
Q 010988 282 SVVYVCLGSICNLTSSQMIELGLGLEASKKPFIWVIRGGNNTSKEIQEWLLEEKFEERVK-GRGILILGWAPQVLILSHP 360 (496)
Q Consensus 282 ~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~~l~~~ 360 (496)
+.-|++.|......-..-..+-.++...+.++++.++.+.... -..++..... .-++++.
T Consensus 409 p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m-------~~~eL~Ta~~~~lpv~~v------------ 469 (586)
T PRK06276 409 PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLM-------NSQELATIAEYDIPVVIC------------ 469 (586)
T ss_pred CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhc-------cHHHHHHHHHhCCCeEEE------------
Confidence 3455654333322223334555666667778888777765110 0112211110 2234442
Q ss_pred cccccccCCChhhHHH--HHHhCCcEeccCCccccchhHHHHHHHhhceEEecccCCCCCCcccccccccCHHHHHHHHH
Q 010988 361 SIGGFLTHCGWNSSLE--AISAGVPMITWPLFGDQFCNEKLIVQVLNIGVRIGVEVPLDFGEEEEIGVLVKKEDVVKAIN 438 (496)
Q Consensus 361 ~~~~~I~HGG~gs~~e--al~~GvP~v~~P~~~DQ~~na~r~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 438 (496)
++.+||+|.+.. -+.++-+....-+ ....+.++.+ |..|+- -.. --+.++|.+++.
T Consensus 470 ----V~NN~~~g~~~~~~~~~~~~~~~~~~~-~~~~d~~~la-~a~G~~--~~~--------------v~~~~el~~al~ 527 (586)
T PRK06276 470 ----IFDNRTLGMVYQWQNLYYGKRQSEVHL-GETPDFVKLA-ESYGVK--ADR--------------VEKPDEIKEALK 527 (586)
T ss_pred ----EEeCCchHHHHHHHHHHhCCCcccccC-CCCCCHHHHH-HHCCCe--EEE--------------ECCHHHHHHHHH
Confidence 899999987643 3444543322111 1134556666 666652 211 246788999988
Q ss_pred HHhc
Q 010988 439 MLMN 442 (496)
Q Consensus 439 ~lL~ 442 (496)
+.++
T Consensus 528 ~a~~ 531 (586)
T PRK06276 528 EAIK 531 (586)
T ss_pred HHHh
Confidence 8763
No 458
>PRK13059 putative lipid kinase; Reviewed
Probab=26.30 E-value=1.7e+02 Score=28.04 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=22.0
Q ss_pred cccccCCChhhHHHHH---H---hCCcEeccCCc
Q 010988 363 GGFLTHCGWNSSLEAI---S---AGVPMITWPLF 390 (496)
Q Consensus 363 ~~~I~HGG~gs~~eal---~---~GvP~v~~P~~ 390 (496)
+.+|.-||=||+.|++ . .++|+-++|..
T Consensus 58 d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 58 KYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred CEEEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 3499999999988874 2 35899999973
No 459
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=26.26 E-value=3.8e+02 Score=28.53 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=22.9
Q ss_pred ccccccccccCCChh------hHHHHHHhCCcEeccC
Q 010988 358 SHPSIGGFLTHCGWN------SSLEAISAGVPMITWP 388 (496)
Q Consensus 358 ~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (496)
..+.+ +++|.|-| ++.+|.+.++|||++.
T Consensus 67 g~~gv--~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 67 GVPGV--CTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CCCEE--EEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 34455 88888744 7889999999999985
No 460
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=26.25 E-value=5.4e+02 Score=24.03 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCC-CeEEEEeCCcchhhHHHHHHhhhcCCCCeEEEEeeCCccccCCCCCCCcccCCCchhhHHHHHHHH
Q 010988 25 PMIDIGRLLAQNG-AAITIVTTPANAARFKTVVARAMQSGLPLQLIEIQFPYQEAGIPEGSENFDMLHSTDLLFNFFKSL 103 (496)
Q Consensus 25 p~l~LA~~L~~rG-H~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 103 (496)
-+-..++.|.+.+ .+|-+.+.....+.+.+ ....+..+-+..+|.+....+++.. .......
T Consensus 117 ~~~eA~~~l~~~~~~~iflttGsk~L~~f~~----~~~~~~r~~~RvLp~~~~~~g~~~~--~iia~~G----------- 179 (249)
T PF02571_consen 117 SYEEAAELLKELGGGRIFLTTGSKNLPPFVP----APLPGERLFARVLPTPESALGFPPK--NIIAMQG----------- 179 (249)
T ss_pred CHHHHHHHHhhcCCCCEEEeCchhhHHHHhh----cccCCCEEEEEECCCccccCCCChh--hEEEEeC-----------
Confidence 3556677777777 55554444444444432 0112334555666644332222111 0000000
Q ss_pred HhhhHHHHHHHHhcCCCCeEEEEcCCCc----chHHHHHhcCCCeEEE
Q 010988 104 TLLQLPLENLLKELAPKPSCIVSDMCYP----WTVDTAARFNIPRISF 147 (496)
Q Consensus 104 ~~~~~~l~~ll~~~~~~pDlVI~D~~~~----~a~~~A~~lgiP~v~~ 147 (496)
....+.-..+++. .+.|+||+=...- .=..+|+.+|||++++
T Consensus 180 Pfs~e~n~al~~~--~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 180 PFSKELNRALFRQ--YGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 0112234567777 7999999864322 2256899999999985
No 461
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=26.25 E-value=4.5e+02 Score=23.06 Aligned_cols=35 Identities=6% Similarity=0.140 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIV 43 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~ 43 (496)
+--|.+++..+.|-..-.+.+|-..+.+|++|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 34677888899999999999999999999999766
No 462
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.24 E-value=1.8e+02 Score=25.30 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=40.9
Q ss_pred cCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhcCCCCCCccc
Q 010988 428 VKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIMHQPHSDHQHI 493 (496)
Q Consensus 428 ~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 493 (496)
.+.+-|++++.++-+.......+-.+..++++++- ++|. .++.+|++ .||+.|-||.
T Consensus 93 ~DvepI~~~Ldkl~~~~~q~~a~lHklE~~RdrLi---a~GD---~Alt~~l~---~~P~aDrq~L 149 (187)
T COG3028 93 RDVEPIRAALDKLRNRHNQQVALLHKLEQLRDRLI---AEGD---GALTEFLN---QYPDADRQQL 149 (187)
T ss_pred CChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---hcCc---hHHHHHHH---HCCcccHHHH
Confidence 57888999998887654444456677888888887 5555 46666655 5788887775
No 463
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=26.23 E-value=7.1e+02 Score=27.56 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=31.5
Q ss_pred CCCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 8 QQPHFVLFPF--LAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 8 ~~~~il~~~~--~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
+..|++.++. ++-|-..-...||..|++.|++|.++=.+
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D 584 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDAD 584 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3557666665 57999999999999999999999888554
No 464
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=26.23 E-value=1.5e+02 Score=18.50 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010988 429 KKEDVVKAINMLMNEGGERENRRKRAREF 457 (496)
Q Consensus 429 ~~~~l~~~i~~lL~~~~~~~~~~~~a~~l 457 (496)
++..+..-.+..|.||..+++-|+.|++.
T Consensus 2 ~~~~V~~G~KAal~NPnvSeeaK~~A~~~ 30 (36)
T PF10346_consen 2 DPNNVAGGYKAALHNPNVSEEAKQHAREK 30 (36)
T ss_pred cHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 35677888888999997777777776654
No 465
>PLN00198 anthocyanidin reductase; Provisional
Probab=26.20 E-value=93 Score=30.35 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=27.7
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 1 MASEGSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 1 m~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
||-...+.+++|++.... |.+- ..|+++|.++||+|+.+...
T Consensus 1 ~~~~~~~~~~~vlItG~~--GfIG--~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 1 MATLTPTGKKTACVIGGT--GFLA--SLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CCcccCCCCCeEEEECCc--hHHH--HHHHHHHHHCCCEEEEEECC
Confidence 666555666776655433 3333 34789999999999866544
No 466
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=26.18 E-value=2.1e+02 Score=33.24 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCC--ccC----HHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 8 QQPHFVLFPFLA--QGH----MIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 8 ~~~~il~~~~~~--~GH----i~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
.+.||+++-.+. .|. =+-.+.++++|++.||+|.++...+
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~np 599 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNP 599 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCc
Confidence 567898888754 332 2478889999999999999887663
No 467
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=26.14 E-value=50 Score=31.88 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=28.6
Q ss_pred hccccccccccCCChhhHHHHHH----hCCcEeccCCccc
Q 010988 357 LSHPSIGGFLTHCGWNSSLEAIS----AGVPMITWPLFGD 392 (496)
Q Consensus 357 l~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~D 392 (496)
|..-+++.+|.=||.+|..-|.. .++|+|++|-..|
T Consensus 87 l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 87 LKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 44456677999999999876643 7999999998765
No 468
>PRK08939 primosomal protein DnaI; Reviewed
Probab=26.09 E-value=96 Score=30.07 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=35.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFK 53 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (496)
..+++...++.|=..=+.+||.+|.++|+.|+|+..+.....++
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK 200 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence 35777777889999999999999999999999998875444443
No 469
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=26.05 E-value=1.3e+02 Score=28.05 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=28.4
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 11 HFVLFPF-LAQGHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 11 ~il~~~~-~~~GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
.|.+... ++-|-..=..+||..|++.|++|..+=-
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 4444444 6799999999999999999999998743
No 470
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=25.99 E-value=1.6e+02 Score=27.26 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAAR 51 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (496)
|.+|.++-=++.|--.-...++.+|++.||+|-.+.=++..+.
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDS 43 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADS 43 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcch
Confidence 4588999999999999999999999999999999876655543
No 471
>PRK08266 hypothetical protein; Provisional
Probab=25.96 E-value=3.8e+02 Score=28.23 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=22.5
Q ss_pred cccccccccCCChh------hHHHHHHhCCcEeccC
Q 010988 359 HPSIGGFLTHCGWN------SSLEAISAGVPMITWP 388 (496)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (496)
++.+ +++|.|-| ++.+|...++|+|++-
T Consensus 68 ~~~v--~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 68 RPGV--CSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CCeE--EEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 3445 88888854 8889999999999884
No 472
>PRK06703 flavodoxin; Provisional
Probab=25.94 E-value=1.2e+02 Score=25.58 Aligned_cols=38 Identities=8% Similarity=-0.013 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCccCHHHHH-HHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMI-DIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l-~LA~~L~~rGH~Vt~~~~~ 46 (496)
|||++++-.-..|+..-+. .|++.|...|++|.+.-..
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 4577666655688887754 5678888889999876543
No 473
>PRK11269 glyoxylate carboligase; Provisional
Probab=25.90 E-value=2.8e+02 Score=29.66 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=20.3
Q ss_pred cccCCC------hhhHHHHHHhCCcEeccC
Q 010988 365 FLTHCG------WNSSLEAISAGVPMITWP 388 (496)
Q Consensus 365 ~I~HGG------~gs~~eal~~GvP~v~~P 388 (496)
+++|.| .+++.+|.+.++|+|++.
T Consensus 72 ~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 72 CIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 666666 779999999999999885
No 474
>PRK06180 short chain dehydrogenase; Provisional
Probab=25.84 E-value=1.1e+02 Score=28.70 Aligned_cols=33 Identities=6% Similarity=-0.039 Sum_probs=23.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 11 HFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 11 ~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|.++++ ++.|.+ =..+++.|+++||+|+.+...
T Consensus 5 ~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 445555 444544 357788999999999988754
No 475
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=25.81 E-value=7.8e+02 Score=25.90 Aligned_cols=30 Identities=13% Similarity=0.327 Sum_probs=23.6
Q ss_pred HHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEE
Q 010988 112 NLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRIS 146 (496)
Q Consensus 112 ~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~ 146 (496)
+.++. .+||++|.....- .+|+++|||++-
T Consensus 392 ~~l~~--~~~Dllig~s~~~---~~A~k~gIP~ld 421 (513)
T TIGR01861 392 EAMEM--LKPDIILTGKRPG---EVSKKMRVPYLN 421 (513)
T ss_pred HHHHh--cCCCEEEecCccc---hhHhhcCCCEEE
Confidence 45566 6999999986533 689999999976
No 476
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=25.73 E-value=3.8e+02 Score=25.14 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCc-----chHHHHHhcCCCeEEE
Q 010988 109 PLENLLKELAPKPSCIVSDMCYP-----WTVDTAARFNIPRISF 147 (496)
Q Consensus 109 ~l~~ll~~~~~~pDlVI~D~~~~-----~a~~~A~~lgiP~v~~ 147 (496)
.-..+++. .+.|+||+-...- .=..+|+.+|||++++
T Consensus 187 ~n~all~q--~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 187 DNKALLEQ--YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHHHHHHH--hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 34566777 7999999874332 3367999999999985
No 477
>PHA02754 hypothetical protein; Provisional
Probab=25.70 E-value=93 Score=21.44 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=17.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 010988 437 INMLMNEGGERENRRKRAREFQMMAKRA 464 (496)
Q Consensus 437 i~~lL~~~~~~~~~~~~a~~l~~~~~~a 464 (496)
|.+++.+. +|++..+++++.+.++
T Consensus 7 i~k~i~eK----~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 7 IPKAIMEK----DFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHh----HHHHHHHHHHHHHhhC
Confidence 44555656 8899999999998743
No 478
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=25.60 E-value=2.9e+02 Score=26.44 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.4
Q ss_pred hhHHHHHHHHhcCCCCeEEEE
Q 010988 106 LQLPLENLLKELAPKPSCIVS 126 (496)
Q Consensus 106 ~~~~l~~ll~~~~~~pDlVI~ 126 (496)
....+.++++. .+||+||+
T Consensus 111 ~~~~l~~~Ir~--~~PdvViT 129 (284)
T TIGR03445 111 AAGALVAVIRE--VRPHVVVT 129 (284)
T ss_pred HHHHHHHHHHH--hCCcEEEe
Confidence 45677788888 79999986
No 479
>PLN02778 3,5-epimerase/4-reductase
Probab=25.51 E-value=1.1e+02 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCC-ccCHHHHHHHHHHHHhCCCeEEEE
Q 010988 7 SQQPHFVLFPFLA-QGHMIPMIDIGRLLAQNGAAITIV 43 (496)
Q Consensus 7 ~~~~~il~~~~~~-~GHi~p~l~LA~~L~~rGH~Vt~~ 43 (496)
...|||++.-..+ .|+ .|++.|.++||+|++.
T Consensus 7 ~~~~kiLVtG~tGfiG~-----~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 7 SATLKFLIYGKTGWIGG-----LLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCeEEEECCCCHHHH-----HHHHHHHhCCCEEEEe
Confidence 4457887765433 443 4788899999999864
No 480
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=25.41 E-value=1e+02 Score=27.25 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 10 PHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 10 ~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|||.++ +.||+- +.+|..|+++||+|+.+=..
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCC
Confidence 577776 455554 67788899999999977554
No 481
>PRK07236 hypothetical protein; Provisional
Probab=25.39 E-value=78 Score=31.66 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=28.3
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 6 SSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 6 ~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
+|++++|+|+-.+-.| +.+|..|+++|++|+++--.
T Consensus 3 ~~~~~~ViIVGaG~aG-----l~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 3 HMSGPRAVVIGGSLGG-----LFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCCeEEEECCCHHH-----HHHHHHHHhCCCCEEEEecC
Confidence 4667899998866333 67899999999999999643
No 482
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=25.39 E-value=99 Score=30.03 Aligned_cols=38 Identities=3% Similarity=-0.161 Sum_probs=29.7
Q ss_pred CEEEEEcCC--C-ccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 10 PHFVLFPFL--A-QGHMIPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 10 ~~il~~~~~--~-~GHi~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
|||+|+.-| . .-+..-..+|.++..+|||+|.++.+..
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 477777754 2 4455678899999999999999998874
No 483
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=25.28 E-value=2.9e+02 Score=20.60 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=40.2
Q ss_pred ccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 010988 427 LVKKEDVVKAINMLMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDI 482 (496)
Q Consensus 427 ~~~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 482 (496)
.++..+|...+.+.+-+.+-.+..|.+.-+........+..|++..-++..++..+
T Consensus 34 G~s~~~Il~~l~~~l~~~~~~~~~k~~i~~~la~~e~rl~~G~~e~lQl~alva~~ 89 (89)
T PF08542_consen 34 GYSASDILKQLHEVLVESDIPDSQKAEILKILAEIEYRLSDGASEILQLEALVAAF 89 (89)
T ss_dssp T--HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHhhC
Confidence 47888888888877654433457777777777788888899999999988888753
No 484
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=25.23 E-value=1.1e+02 Score=19.93 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 010988 429 KKEDVVKAINMLMNEGGERENRRKRAREFQ 458 (496)
Q Consensus 429 ~~~~l~~~i~~lL~~~~~~~~~~~~a~~l~ 458 (496)
++++|.+||..+.++. -.+++.|++..
T Consensus 1 tee~l~~Ai~~v~~g~---~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK---MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS---S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC---CCHHHHHHHHC
Confidence 4688999999998652 15666666553
No 485
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=25.21 E-value=3.4e+02 Score=24.90 Aligned_cols=42 Identities=21% Similarity=0.068 Sum_probs=25.8
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 1 MASEGSSQQPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 1 m~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
|...|+++.. .++++. +.|.+ =..+++.|+++|++|.+....
T Consensus 1 ~~~~~~l~~k-~~lItG-as~gi--G~~ia~~L~~~G~~vvl~~r~ 42 (254)
T PRK08085 1 MNDLFSLAGK-NILITG-SAQGI--GFLLATGLAEYGAEIIINDIT 42 (254)
T ss_pred CcccccCCCC-EEEEEC-CCChH--HHHHHHHHHHcCCEEEEEcCC
Confidence 4554444443 444443 33333 257899999999999886543
No 486
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=25.13 E-value=6.7e+02 Score=24.69 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=19.1
Q ss_pred hCCcEeccCCccccc-----hhHHHHHHHhhc-eEEecc
Q 010988 380 AGVPMITWPLFGDQF-----CNEKLIVQVLNI-GVRIGV 412 (496)
Q Consensus 380 ~GvP~v~~P~~~DQ~-----~na~r~~e~~G~-g~~l~~ 412 (496)
.+.|+++-|.+.-.. .-++..+ .+|+ |+.+.+
T Consensus 261 ~~lPVi~d~sH~~G~~~~v~~~a~AAv-A~GAdGliIE~ 298 (335)
T PRK08673 261 THLPVIVDPSHATGKRDLVEPLALAAV-AAGADGLIVEV 298 (335)
T ss_pred cCCCEEEeCCCCCccccchHHHHHHHH-HhCCCEEEEEe
Confidence 357777777665332 4455554 6777 566654
No 487
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=25.10 E-value=8.1e+02 Score=27.98 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCcchHHHHHhcCCCeEEEe
Q 010988 109 PLENLLKELAPKPSCIVSDMCYPWTVDTAARFNIPRISFH 148 (496)
Q Consensus 109 ~l~~ll~~~~~~pDlVI~D~~~~~a~~~A~~lgiP~v~~~ 148 (496)
++.+.++. .+||++|.... ...+|+++|||++-..
T Consensus 380 el~~~i~~--~~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 380 GLLRVMRE--KMPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHh--cCCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 45566777 69999998643 3457899999999755
No 488
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=25.06 E-value=1.8e+02 Score=25.78 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCc-chHHHHHhcCCCeEEEecchHHH
Q 010988 108 LPLENLLKELAPKPSCIVSDMCYP-WTVDTAARFNIPRISFHGFSCFC 154 (496)
Q Consensus 108 ~~l~~ll~~~~~~pDlVI~D~~~~-~a~~~A~~lgiP~v~~~~~~~~~ 154 (496)
..++++++....+..++|..++.. .|..+|+.+|+|.|.+.|.....
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~ 94 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRPY 94 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHH
Confidence 355666666312223666665544 77789999999999987766443
No 489
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=25.02 E-value=1.2e+02 Score=30.85 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=30.7
Q ss_pred CCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLFPF--LAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~--~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
.++|+.+.. |+-|-..-.+.||..|+.+|++|.++=.+
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 456555554 78999999999999999999999988444
No 490
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.98 E-value=3.2e+02 Score=29.05 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.7
Q ss_pred cccccccccCCChh------hHHHHHHhCCcEeccC
Q 010988 359 HPSIGGFLTHCGWN------SSLEAISAGVPMITWP 388 (496)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (496)
++.+ +++|.|-| ++.+|.+.++|+|++.
T Consensus 67 ~~gv--~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 67 KVGC--VLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4555 88888855 7889999999999885
No 491
>PRK11914 diacylglycerol kinase; Reviewed
Probab=24.89 E-value=4.5e+02 Score=25.25 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCCccC--H-HHHHHHHHHHHhCCCeEEEEeCCc
Q 010988 7 SQQPHFVLFPFLAQGH--M-IPMIDIGRLLAQNGAAITIVTTPA 47 (496)
Q Consensus 7 ~~~~~il~~~~~~~GH--i-~p~l~LA~~L~~rGH~Vt~~~~~~ 47 (496)
++|+|++++-.|..|. . .-.-.+.+.|.++|++++++.+..
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 4567877777776443 3 234467888999999988766654
No 492
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.85 E-value=2.9e+02 Score=20.69 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=27.4
Q ss_pred EEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeC
Q 010988 11 HFVLFPFLAQ--GHMIPMIDIGRLLAQNGAAITIVTT 45 (496)
Q Consensus 11 ~il~~~~~~~--GHi~p~l~LA~~L~~rGH~Vt~~~~ 45 (496)
+|+++|.... .+..-...++..|.+.|..|.+-..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 6788886643 4666788999999999999988543
No 493
>PRK04940 hypothetical protein; Provisional
Probab=24.84 E-value=1.6e+02 Score=26.07 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCc-chHHHHHhcCCCeEEEecch
Q 010988 120 KPSCIVSDMCYP-WTVDTAARFNIPRISFHGFS 151 (496)
Q Consensus 120 ~pDlVI~D~~~~-~a~~~A~~lgiP~v~~~~~~ 151 (496)
++.++|...+.. +|..+|+.+|+|.|.+.|..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 567888776655 89999999999999976654
No 494
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=24.82 E-value=1.7e+02 Score=21.70 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=27.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVT 44 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~ 44 (496)
+++...++.|=..-...++..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 445555678888899999999999999998775
No 495
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.71 E-value=5.2e+02 Score=23.84 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=19.5
Q ss_pred CCCeEEEEcCCCcc----hHHHHHhcCCCeEEEe
Q 010988 119 PKPSCIVSDMCYPW----TVDTAARFNIPRISFH 148 (496)
Q Consensus 119 ~~pDlVI~D~~~~~----a~~~A~~lgiP~v~~~ 148 (496)
.++|.||....... ....+...|+|+|.+.
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVD 87 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEEec
Confidence 48999887543332 2344566899999853
No 496
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=24.69 E-value=6e+02 Score=24.02 Aligned_cols=47 Identities=9% Similarity=-0.028 Sum_probs=23.7
Q ss_pred hhhhccccCCCCCCeEEEEeeCCccCCChhhHHHHHHHHHhCCC-CeEEEEe
Q 010988 268 VSECLNWLDSWPPNSVVYVCLGSICNLTSSQMIELGLGLEASKK-PFIWVIR 318 (496)
Q Consensus 268 ~~~~~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~a~~~~~~-~~i~~~~ 318 (496)
+.++...+... .+ +|.++-|+... .+.+...++.+...|. ++++..+
T Consensus 123 n~~LL~~~a~~-gk-PV~lk~G~~~s--~~e~~~A~e~i~~~Gn~~i~L~~r 170 (266)
T PRK13398 123 NFELLKEVGKT-KK-PILLKRGMSAT--LEEWLYAAEYIMSEGNENVVLCER 170 (266)
T ss_pred CHHHHHHHhcC-CC-cEEEeCCCCCC--HHHHHHHHHHHHhcCCCeEEEEEC
Confidence 44555555433 23 56677776643 4445555555554433 4444443
No 497
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=24.69 E-value=1.9e+02 Score=29.92 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=33.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 010988 12 FVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTPANAARFK 53 (496)
Q Consensus 12 il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (496)
+++..-|+.|-..=++.++..++++|++|.|+..+...+.+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 455555789999999999999999999999998876554443
No 498
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=24.62 E-value=4.4e+02 Score=28.19 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=23.4
Q ss_pred ccccccccccCCChh------hHHHHHHhCCcEeccC
Q 010988 358 SHPSIGGFLTHCGWN------SSLEAISAGVPMITWP 388 (496)
Q Consensus 358 ~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (496)
.++.+ +++|.|-| ++.+|...++|+|++.
T Consensus 67 g~~gv--~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 67 GRMGM--VIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCCEE--EEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34555 88888854 7889999999999996
No 499
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=24.62 E-value=81 Score=30.52 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010988 9 QPHFVLFPFLAQGHMIPMIDIGRLLAQNGAAITIVTTP 46 (496)
Q Consensus 9 ~~~il~~~~~~~GHi~p~l~LA~~L~~rGH~Vt~~~~~ 46 (496)
++||.|+..+..| ..+|..|+++||+|+++...
T Consensus 2 ~~~V~VIG~G~mG-----~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 2 MGSVAIIGAGLIG-----RAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred CcEEEEECccHHH-----HHHHHHHHHCCCeeEEEeCC
Confidence 4688888755444 46888999999999988655
No 500
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.59 E-value=2.4e+02 Score=24.37 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=32.2
Q ss_pred ccCHHHHHHHHHH---HhcCChhHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhcCC
Q 010988 427 LVKKEDVVKAINM---LMNEGGERENRRKRAREFQMMAKRATEETGSSSLMIKLLIQDIMHQP 486 (496)
Q Consensus 427 ~~~~~~l~~~i~~---lL~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 486 (496)
.|+++.+.+.|-. +| ++|...+.|+.-+ +|. ..++++|+++++..
T Consensus 104 DFsP~~Va~qVp~L~kLL-------eaR~~L~~L~~~l------dg~--~~~e~~l~~lL~n~ 151 (169)
T COG3516 104 DFSPDAVARQVPELKKLL-------EARTALADLKGPL------DGN--PAFEELLQDLLKNE 151 (169)
T ss_pred cCCHHHHHHhhHHHHHHH-------HHHHHHHHHhccc------cCc--HHHHHHHHHHHcCH
Confidence 6999999998654 45 5666666665554 343 78889999887764
Done!