BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010989
         (496 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
           Of Plant Myb-Related Dna Binding Motifs Of The
           Arabidopsis Response Regulators
          Length = 64

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA 320
           KPR+ WT ELH  F+ AV+ L G E+A PK +L LMNV+ LT  +V SHLQK+R+A
Sbjct: 5   KPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59


>pdb|3DPT|A Chain A, Cor Domain Of Rab Family Protein (Roco)
 pdb|3DPT|B Chain B, Cor Domain Of Rab Family Protein (Roco)
          Length = 332

 Score = 30.0 bits (66), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 361 RMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQ 411
           R+ + +Q Q+ ++++ +  + L+ ++H   L K+VAE  KD + TI  Q +
Sbjct: 198 RLMIAMQHQILDRMQWRYGMVLKSQDHEGALAKVVAE-TKDSTITIAIQGE 247


>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
 pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
          Length = 535

 Score = 30.0 bits (66), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 361 RMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQ 411
           R+ + +Q Q+ ++++ +  + L+ ++H   L K+VAE  KD + TI  Q +
Sbjct: 401 RLMIAMQHQILDRMQWRYGMVLKSQDHEGALAKVVAE-TKDSTITIAIQGE 450


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.128    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,059,765
Number of Sequences: 62578
Number of extensions: 466901
Number of successful extensions: 750
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 7
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)