BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010990
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/483 (51%), Positives = 323/483 (66%), Gaps = 3/483 (0%)
Query: 11 LQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLK 70
+Y+ +M+L++RNE+LFY++L ++E+ +P+VYTPTVG ACQ+Y +FR+P+GL+I++
Sbjct: 80 FDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIH 139
Query: 71 EKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSAC 130
++G I VL WPE I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P C
Sbjct: 140 DRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQEC 199
Query: 131 LPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 190
LP+ +DVGT NE+LLKD YIGLRQRR G EY + LDEFM AV YG LIQFEDFA
Sbjct: 200 LPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFA 259
Query: 191 NHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTG 250
N NAF LL KY + FNDDIQ L++ LF GAGEA G
Sbjct: 260 NVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEAALG 319
Query: 251 IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 310
IA LI + + K+ P E+ KKI LVDSKGLIV R SL K+ +AHEHE + NL
Sbjct: 320 IAHLIVMALEKE-GLPKEKAIKKIWLVDSKGLIVKGRA-SLTQEKEKFAHEHEEMKNLEA 377
Query: 311 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG 370
V+ IKPT LIG + +G F++++++ MA+FNE+P+I ALSNPTS++EC+AE+ Y +KG
Sbjct: 378 IVQEIKPTALIGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKG 437
Query: 371 RAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA 429
RAIFASGSPFDP NG+ PGQ NN+Y+FPG LG+V G ++ D++ L +E +A
Sbjct: 438 RAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQITDNIFLTTAEVIA 497
Query: 430 KQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYT 489
+QV++++ E+G +YPP + IR Y+ AT P PQN S MY+
Sbjct: 498 QQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDAYQEKTATVYPEPQNKEAFVRSQMYS 557
Query: 490 PVY 492
Y
Sbjct: 558 TDY 560
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 490 bits (1261), Expect = e-139, Method: Compositional matrix adjust.
Identities = 233/483 (48%), Positives = 320/483 (66%), Gaps = 6/483 (1%)
Query: 3 SIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRP 62
++++ PL+KY+ +M ++ERNE+LFY++L D++E L+P+VYTPTVG AC +YG IFRRP
Sbjct: 52 NLKKMTSPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRP 111
Query: 63 QGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTAL 122
+GL+IS+ ++G + ++ NWPE ++ +VVTDGERILGLGDLG GMGIPVGKL LYTA
Sbjct: 112 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTAC 171
Query: 123 GGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 182
GIRP CLP+ +DVGT+N LLKD FY+GL Q+R Q+Y +L+DEFM A+ YG
Sbjct: 172 AGIRPDQCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNT 231
Query: 183 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFL 242
LIQFEDF NHNAF L KY + FNDDIQ ++EH+ LFL
Sbjct: 232 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFL 291
Query: 243 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-- 300
GAGEA GIA LI + + + + +E +KKI + D GL+V RK + +++P+ H
Sbjct: 292 GAGEAALGIANLIVMSMVENGLSE-QEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSA 350
Query: 301 -EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSEC 359
E P + DAV ++KP+ +IG +G GR FT +VI AMAS NE+P+I ALSNPT+Q+EC
Sbjct: 351 PESIP-DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAEC 409
Query: 360 TAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHD 418
TAEEAYT ++GR +FASGSPF P + +G+VF PGQ NN YIFPG L +++ + D
Sbjct: 410 TAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISD 469
Query: 419 DMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQN 478
+ L A++AL Q+T+E +G +YPP +NI+ Y +A P P++
Sbjct: 470 SVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFVYPEPED 529
Query: 479 LVK 481
K
Sbjct: 530 KAK 532
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 487 bits (1253), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/486 (49%), Positives = 316/486 (65%), Gaps = 3/486 (0%)
Query: 11 LQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLK 70
L +Y+ + L++RNE+LFYK+L ++E P+VYTPTVG ACQ YG FRRP+GL+I++
Sbjct: 57 LDRYILLXSLQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAFRRPRGLFITIH 116
Query: 71 EKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSAC 130
++G I L++WPE I+ IVVTDGERILGLGDLGC G GIPVGKLALYTA GG++P C
Sbjct: 117 DRGHIATXLQSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGGVKPHQC 176
Query: 131 LPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 190
LP+ +DVGT+NE LLKD YIGLR +R GQ Y +LLDEF AV YG LIQFEDFA
Sbjct: 177 LPVXLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLIQFEDFA 236
Query: 191 NHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTG 250
N NAF LL KY + FNDDIQ L++H LF GAGEA G
Sbjct: 237 NANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALG 296
Query: 251 IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 310
IA LI K+ + EE K+I VDSKGLIV R SL K+ +AHEH NL D
Sbjct: 297 IANLIVXAXQKEGVSK-EEAIKRIWXVDSKGLIVKGRA-SLTPEKEHFAHEHCEXKNLED 354
Query: 311 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG 370
VK IKPT+LIG + +G FT+++++ A+FN++P+I ALSNPTS++ECTAE+ Y +++G
Sbjct: 355 IVKDIKPTVLIGVAAIGGAFTQQILQDXAAFNKRPIIFALSNPTSKAECTAEQLYKYTEG 414
Query: 371 RAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA 429
R IFASGSPFDP +G+ PGQ NN+Y+FPG LG++ G + DD+ L +E +A
Sbjct: 415 RGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIA 474
Query: 430 KQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYT 489
++V+EEN ++G +YPP I+ Y A+ P+P++L S +Y+
Sbjct: 475 QEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYS 534
Query: 490 PVYRNY 495
Y +
Sbjct: 535 TDYNCF 540
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/483 (47%), Positives = 311/483 (64%), Gaps = 6/483 (1%)
Query: 3 SIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRP 62
++++ PL+KY+ + ++ERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP
Sbjct: 71 NLKKXTSPLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRP 130
Query: 63 QGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTAL 122
+GL+IS+ ++G + ++ NWPE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA
Sbjct: 131 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTAC 190
Query: 123 GGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 182
GIRP CLP+ +DVGT+N LLKD FY GL Q+R Q+Y +L+DEF A+ YG
Sbjct: 191 AGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNT 250
Query: 183 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFL 242
LIQFEDF NHNAF L KY + FNDDIQ ++EH+ LFL
Sbjct: 251 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFL 310
Query: 243 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-- 300
GAGEA GIA LI + + +E +KKI D GL+V RK + +++P+ H
Sbjct: 311 GAGEAALGIANLIVXSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSA 369
Query: 301 -EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSEC 359
E P + DAV ++KP+ +IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+EC
Sbjct: 370 PESIP-DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAEC 428
Query: 360 TAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHD 418
TAEEAYT ++GR +FASGSPF P + +G+VF PGQ NN YIFPG L +++ + D
Sbjct: 429 TAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISD 488
Query: 419 DMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQN 478
+ L A++AL Q+T+E +G +YPP +NI+ Y A R P P++
Sbjct: 489 SVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPED 548
Query: 479 LVK 481
K
Sbjct: 549 KAK 551
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 475 bits (1222), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/483 (47%), Positives = 311/483 (64%), Gaps = 6/483 (1%)
Query: 3 SIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRP 62
++++ PL+KY+ + ++ERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP
Sbjct: 71 NLKKXTSPLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRP 130
Query: 63 QGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTAL 122
+GL+IS+ ++G + ++ NWPE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA
Sbjct: 131 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTAC 190
Query: 123 GGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 182
GIRP CLP+ +DVGT+N LLKD FY GL Q+R Q+Y +L+DEF A+ YG
Sbjct: 191 AGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNT 250
Query: 183 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFL 242
LIQFEDF NHNAF L KY + FNDDIQ ++EH+ LFL
Sbjct: 251 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFL 310
Query: 243 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-- 300
GAGEA GIA LI + + +E +KKI D GL+V RK + +++P+ H
Sbjct: 311 GAGEAALGIANLIVXSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSA 369
Query: 301 -EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSEC 359
E P + DAV ++KP+ +IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+EC
Sbjct: 370 PESIP-DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAEC 428
Query: 360 TAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHD 418
TAEEAYT ++GR +FASGSPF P + +G+VF PGQ NN YIFPG L +++ + D
Sbjct: 429 TAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISD 488
Query: 419 DMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQN 478
+ L A++AL Q+T+E +G +YPP +NI+ Y A R P P++
Sbjct: 489 SVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPED 548
Query: 479 LVK 481
K
Sbjct: 549 KAK 551
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/483 (47%), Positives = 311/483 (64%), Gaps = 6/483 (1%)
Query: 3 SIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRP 62
++++ PL+KY+ + ++ERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP
Sbjct: 49 NLKKXTSPLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRP 108
Query: 63 QGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTAL 122
+GL+IS+ ++G + ++ NWPE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA
Sbjct: 109 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTAC 168
Query: 123 GGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 182
GIRP CLP+ +DVGT+N LLKD FY GL Q+R Q+Y +L+DEF A+ YG
Sbjct: 169 AGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNT 228
Query: 183 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFL 242
LIQFEDF NHNAF L KY + FNDDIQ ++EH+ LFL
Sbjct: 229 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFL 288
Query: 243 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-- 300
GAGEA GIA LI + + +E +KKI D GL+V RK + +++P+ H
Sbjct: 289 GAGEAALGIANLIVXSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSA 347
Query: 301 -EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSEC 359
E P + DAV ++KP+ +IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+EC
Sbjct: 348 PESIP-DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAEC 406
Query: 360 TAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHD 418
TAEEAYT ++GR +FASGSPF P + +G+VF PGQ NN YIFPG L +++ + D
Sbjct: 407 TAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISD 466
Query: 419 DMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQN 478
+ L A++AL Q+T+E +G +YPP +NI+ Y A R P P++
Sbjct: 467 SVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPED 526
Query: 479 LVK 481
K
Sbjct: 527 KAK 529
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 474 bits (1220), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/483 (47%), Positives = 311/483 (64%), Gaps = 6/483 (1%)
Query: 3 SIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRP 62
++++ PL+KY+ + ++ERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP
Sbjct: 51 NLKKXTSPLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRP 110
Query: 63 QGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTAL 122
+GL+IS+ ++G + ++ NWPE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA
Sbjct: 111 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTAC 170
Query: 123 GGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 182
GIRP CLP+ +DVGT+N LLKD FY GL Q+R Q+Y +L+DEF A+ YG
Sbjct: 171 AGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNT 230
Query: 183 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFL 242
LIQFEDF NHNAF L KY + FNDDIQ ++EH+ LFL
Sbjct: 231 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFL 290
Query: 243 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-- 300
GAGEA GIA LI + + +E +KKI D GL+V RK + +++P+ H
Sbjct: 291 GAGEAALGIANLIVXSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSA 349
Query: 301 -EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSEC 359
E P + DAV ++KP+ +IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+EC
Sbjct: 350 PESIP-DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAEC 408
Query: 360 TAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHD 418
TAEEAYT ++GR +FASGSPF P + +G+VF PGQ NN YIFPG L +++ + D
Sbjct: 409 TAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISD 468
Query: 419 DMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQN 478
+ L A++AL Q+T+E +G +YPP +NI+ Y A R P P++
Sbjct: 469 SVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPED 528
Query: 479 LVK 481
K
Sbjct: 529 KAK 531
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/495 (45%), Positives = 320/495 (64%), Gaps = 6/495 (1%)
Query: 1 MNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFR 60
+ +R+ L +Y+ + L++RNE+LFY+++ D+V+EL+P+VYTPTVG ACQ +G I+R
Sbjct: 83 ITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYR 142
Query: 61 RPQGLYISLKEKG--KILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLAL 118
+P+GLYI++ + KI ++L NW E ++ IVVTDGERILGLGDLG G+GIPVGKLAL
Sbjct: 143 KPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLAL 202
Query: 119 YTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNY 178
Y ALGG++P CLP+ +DVGTNN LL D FYIGLR +R G++Y LLD FM A + Y
Sbjct: 203 YVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKY 262
Query: 179 GEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHR 238
G+K LIQFEDFAN NAF LL KY + +FNDDIQ +++ +
Sbjct: 263 GQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEK 322
Query: 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKP 297
+LF GAG A TGIAE+I ++ + + EE +I L+D GL+ +RK+ + +H +
Sbjct: 323 YLFFGAGAASTGIAEMIVHQMQNEGISK-EEACNRIYLMDIDGLVTKNRKEMNPRHVQ-- 379
Query: 298 WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQS 357
+A + ++L+ ++ +P LIG+S V F +EVI AMA NE+P+I ALSNPTS++
Sbjct: 380 FAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKA 439
Query: 358 ECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 417
ECTAEEAYT++ G A++ASGSPF FE NG + PGQ NNAYIFPG LG ++ V
Sbjct: 440 ECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVD 499
Query: 418 DDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQ 477
+D+ L A++ +A VTE++ + G +YP IR Y+ G A P+P+
Sbjct: 500 NDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANLYPQPE 559
Query: 478 NLVKCAESCMYTPVY 492
+L K + +Y Y
Sbjct: 560 DLEKYVRAQVYNTEY 574
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 140/352 (39%), Gaps = 62/352 (17%)
Query: 89 VIVVTDGERILGLGDLGCQG-MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 147
V VV+D R+LG GD+ G +G+ GK L LGGI +PI +D
Sbjct: 93 VGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGID---AVPICID----------- 138
Query: 148 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLA--KYGTTH 205
+ G+ + + EF+ ++ +G I ED + N +++L +
Sbjct: 139 -------SKNKEGKNDPDAVIEFVQRIQHTFGA---INLEDISQPNCYKILDVLRESCDI 188
Query: 206 LVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 265
V++DD Q + E R +F+GAG + T LI +
Sbjct: 189 PVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP--- 245
Query: 266 PVEETRKKICLVDSKGLIVSSRKDSLQ--HFKKPW--AHEHEPVNNLLDAVKVIKPTILI 321
KKI + DSKG + + R+D + F + W P A + +LI
Sbjct: 246 ------KKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLI 299
Query: 322 GSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ---SECTAEEAYTWSKGRAIFASGS 378
S G K E + S EKP++ +NP + E AY + GR F
Sbjct: 300 SLSTPGPGVVKA--EWIKSMGEKPIVFCCANPVPEIYPYEAKEAGAYIVATGRGDF---- 353
Query: 379 PFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAK 430
P Q NN+ FPG G +I A ++ D+M +AAS ALA+
Sbjct: 354 -------------PNQVNNSVGFPGILKGALIVRARKITDNMAIAASRALAE 392
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 117/430 (27%), Positives = 177/430 (41%), Gaps = 85/430 (19%)
Query: 30 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQV 89
K+ +++ EEL + YTP V E C++ I R P +Y KG + V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKE---IARDPGKVY-EYTSKGNL-------------V 66
Query: 90 IVVTDGERILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 147
VV+DG RILGLG++G G+PV GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---------------------D 104
Query: 148 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT--TH 205
F I +++ QE + +D + A+ +G I ED A+ F +L +
Sbjct: 105 AFPIMIKE-----QEPNKFID-IVKAIAPTFGG---INLEDIASPKCFYILERLREELDI 155
Query: 206 LVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 265
VF+DD Q ++E GAG AG ++ T+A
Sbjct: 156 PVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRIL-------TEA 208
Query: 266 PVE-ETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHEPVNNL----LDAVKVIKPTI 319
V+ E + + LV+ K I++S D + F + W + N+ +A+K I
Sbjct: 209 GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLI 268
Query: 320 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 379
G G + IE M NE ++ L+NP E EEA G I A+G
Sbjct: 269 SFTRPGPG-VIKPQWIEKM---NEDAIVFPLANPVP--EILPEEAK--KAGARIVATG-- 318
Query: 380 FDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEK 439
+ P Q NN FPG G + A + D M++AA++A+A V EE E+
Sbjct: 319 --------RSDYPNQINNLLGFPGIFRGALDVRARTITDSMIIAAAKAIASIV-EEPSEE 369
Query: 440 GLIYPPFSNI 449
+I P + I
Sbjct: 370 NIIPSPLNPI 379
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 134/366 (36%), Gaps = 75/366 (20%)
Query: 89 VIVVTDGERILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLK 146
V V++DG +LGLGD+G + +PV GK AL+ A G+ +PI +D E +
Sbjct: 68 VAVISDGTAVLGLGDIGPEA-AMPVMEGKAALFKAFAGVD---AIPIVLDTKDTEEII-- 121
Query: 147 DEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY-GTTH 205
+ A+ +G I ED + FE+ + H
Sbjct: 122 ----------------------SIVKALAPTFGG---INLEDISAPRCFEIEQRLIKECH 156
Query: 206 L-VFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTK 264
+ VF+DD +L E + G G AG I T+
Sbjct: 157 IPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSI-----------TR 205
Query: 265 APVEETRKKICLVDSKGLIVSSRKDSL--QHFKKPWAHEHE-PVNNLLDAVKVIKPTILI 321
+ K+ +VD G+I L H E L DA++ I I
Sbjct: 206 KLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALE--GADIFI 263
Query: 322 GSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ---SECTAEEAYTWSKGRAIFASGS 378
G S G E I MA+ +P+I A++NP + E AY GR+ F
Sbjct: 264 GVSAPG-VLKAEWISKMAA---RPVIFAMANPIPEIYPDEALEAGAYIVGTGRSDF---- 315
Query: 379 PFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 438
P Q NN FPG G + + A + +M +AA++ +A V ++
Sbjct: 316 -------------PNQINNVLAFPGIFRGALDARAKTITVEMQIAAAKGIASLVPDDALS 362
Query: 439 KGLIYP 444
I P
Sbjct: 363 TTNIIP 368
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 111/433 (25%), Positives = 168/433 (38%), Gaps = 91/433 (21%)
Query: 30 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQV 89
K+ +++ EEL + YTP V E C++ I R P +Y KG + V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKE---IARDPGKVY-EYTSKGNL-------------V 66
Query: 90 IVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDE 148
VV+DG RILGLG++G G+ + GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLAGLPVXEGKALLFKRFGGV---------------------DA 105
Query: 149 FYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT--THL 206
F I +++ QE + +D + A+ +G I ED A+ F +L +
Sbjct: 106 FPIXIKE-----QEPNKFID-IVKAIAPTFGG---INLEDIASPKCFYILERLREELDIP 156
Query: 207 VFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAP 266
VF+DD Q ++E GAG AG ++ T+A
Sbjct: 157 VFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRIL-------TEAG 209
Query: 267 VE-ETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAH--------EHEPVNNLLDAVKVIK 316
V+ E + + LV+ K I++S D + F + W E P L DA
Sbjct: 210 VKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA----- 264
Query: 317 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFAS 376
+LI + G K + + NE ++ L+NP E EEA G I A+
Sbjct: 265 -DVLISFTRPGPGVIKP--QWIEKXNEDAIVFPLANPVP--EILPEEAK--KAGARIVAT 317
Query: 377 GSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEEN 436
G + P Q NN FPG G + A R D + A+ + EE
Sbjct: 318 G----------RSDYPNQINNLLGFPGIFRGALDVRA-RTITDSXIIAAAKAIASIVEEP 366
Query: 437 FEKGLIYPPFSNI 449
E+ +I P + I
Sbjct: 367 SEENIIPSPLNPI 379
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 93/404 (23%), Positives = 149/404 (36%), Gaps = 84/404 (20%)
Query: 38 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGER 97
E L ++YTP V + + + P+ Y+ + R V VV+DG
Sbjct: 28 ETLSLLYTPGVADVAR---ACAEDPEKTYV--------------YTSRWNTVAVVSDGSA 70
Query: 98 ILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQ 155
+LGLG++G G +PV GK L+ A I D F I L +
Sbjct: 71 VLGLGNIGPYG-ALPVMEGKAFLFKAFADI---------------------DAFPICLSE 108
Query: 156 RRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG--TTHLVFNDDIQ 213
E + + +++ ++G I ED F +L + VF+DD Q
Sbjct: 109 SE------EEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEMNIPVFHDDQQ 159
Query: 214 XXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 273
+ E + + G G AG I + + ++ K
Sbjct: 160 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------LDLGVKN 208
Query: 274 ICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTK 332
+ VD KG++ + ++ L + A P D ++ G
Sbjct: 209 VVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKP 268
Query: 333 EVIEAMASFNEKPLILALSNPTSQSECT-AEEAYTWSKGRAIFASGSPFDPFEYNGKVFV 391
E I+ M+ KP+I AL+NP + + A EA G I A+ G+
Sbjct: 269 EWIKKMS---RKPVIFALANPVPEIDPELAREA-----GAFIVAT----------GRSDH 310
Query: 392 PGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE 435
P Q NN FPG G V + ++ +MLL+A EA+A+ E
Sbjct: 311 PNQVNNLLAFPGIMKGAVEKRS-KITKNMLLSAVEAIARSCEPE 353
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/404 (22%), Positives = 147/404 (36%), Gaps = 84/404 (20%)
Query: 38 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGER 97
E L ++YTP V + + + P+ Y+ + R V VV+DG
Sbjct: 38 ETLSLLYTPGVADVAR---ACAEDPEKTYV--------------YTSRWNTVAVVSDGSA 80
Query: 98 ILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQ 155
+LGLG++G G +PV GK L+ A I D F I L +
Sbjct: 81 VLGLGNIGPYG-ALPVXEGKAFLFKAFADI---------------------DAFPICLSE 118
Query: 156 RRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG--TTHLVFNDDIQ 213
E + + +++ ++G I ED F +L + VF+DD Q
Sbjct: 119 SE------EEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEXNIPVFHDDQQ 169
Query: 214 XXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 273
+ E + + G G AG I + + ++ K
Sbjct: 170 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------LDLGVKN 218
Query: 274 ICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTK 332
+ VD KG++ + ++ L + A P D ++ G
Sbjct: 219 VVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKP 278
Query: 333 EVIEAMASFNEKPLILALSNPTSQSECT-AEEAYTWSKGRAIFASGSPFDPFEYNGKVFV 391
E I+ + KP+I AL+NP + + A EA G I A+ G+
Sbjct: 279 EWIKKXS---RKPVIFALANPVPEIDPELAREA-----GAFIVAT----------GRSDH 320
Query: 392 PGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE 435
P Q NN FPG G V + ++ + LL+A EA+A+ E
Sbjct: 321 PNQVNNLLAFPGIXKGAVEKRS-KITKNXLLSAVEAIARSCEPE 363
>pdb|2Y8N|A Chain A, Crystal Structure Of Glycyl Radical Enzyme
pdb|2Y8N|C Chain C, Crystal Structure Of Glycyl Radical Enzyme
pdb|2YAJ|A Chain A, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
pdb|2YAJ|C Chain C, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
Length = 897
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 362 EEAYTWSKGRAIFASGSPFDPFEYNGKV-FVPGQANNAYIFPGFGLGLVISGAIRVHDDM 420
+A W G + ++ F P EYNGKV +PG A+ P G G+ G +V +
Sbjct: 493 HDARAWCLGGCLESAPGCFLPLEYNGKVTMIPGGAS-----PTCGTGVHFIGMPKV---L 544
Query: 421 LLAASEALAKQVTEENFEKGLIYPP 445
L + L K+ ++ +YPP
Sbjct: 545 ELVLTNGLDKRTGKQ------VYPP 563
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 296 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 354
+P + + + L+D +++ +K L+G++G G+TFT + +A N KP ++ N T
Sbjct: 37 EPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 93
Query: 355 SQSECTAE 362
+ +E
Sbjct: 94 LAGQLHSE 101
>pdb|3HQ8|A Chain A, Ccpa From G. Sulfurreducens S134pV135K VARIANT
pdb|3HQ8|B Chain B, Ccpa From G. Sulfurreducens S134pV135K VARIANT
Length = 345
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 256 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 313
A ++++Q K PV+ ++ D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQAPKEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 314 VIKPTILIGSS 324
V + T++ S
Sbjct: 180 VFEATLITPDS 190
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 296 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 349
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 296 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 349
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 296 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 349
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 296 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 349
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 43 VYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIV 91
V+ P + CQ F L +L++KG L V+ N P ++QV+V
Sbjct: 96 VFKPYYADHCQIKTGPFPGILDLXKNLRQKGVKLAVVSNKPNEAVQVLV 144
>pdb|3HQ6|A Chain A, Cytochrome C Peroxidase From G. Sulfurreducens, Wild Type
pdb|3HQ6|B Chain B, Cytochrome C Peroxidase From G. Sulfurreducens, Wild Type
Length = 345
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 256 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 313
A ++++Q K PV+ + + D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQASVEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 314 VIKPTILIGSS 324
V + T++ S
Sbjct: 180 VFEATLITPDS 190
>pdb|3HQ7|A Chain A, Ccpa From G. Sulfurreducens, G94kK97QR100I VARIANT
Length = 345
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 256 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 313
A ++++Q K PV+ + + D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQASVEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 314 VIKPTILIGSS 324
V + T++ S
Sbjct: 180 VFEATLITPDS 190
>pdb|3RU6|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
Length = 303
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 302 HEPVNNLLDAVKVIKP----TILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQS 357
H+ N + DA + + I I +S G+ +EV+ ++ F+++PL+LA+S TS
Sbjct: 86 HDIPNTMADACEEVSKLGVDMINIHASA-GKIAIQEVMTRLSKFSKRPLVLAVSALTSFD 144
Query: 358 E 358
E
Sbjct: 145 E 145
>pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|B Chain B, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|C Chain C, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|D Chain D, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|E Chain E, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|F Chain F, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|G Chain G, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|H Chain H, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|3ES7|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES7|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|C Chain C, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|D Chain D, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|E Chain E, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|F Chain F, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|G Chain G, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|H Chain H, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3FYY|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3FYY|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3GD6|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Phosphate
Length = 391
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 168 DEFMSAVKQNYGEKVLIQFEDFAN-------HNAFELLAKY 201
+EF+S VK+ +G +V I+ DF++ H A + L KY
Sbjct: 173 EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKY 213
>pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
pdb|3HPF|B Chain B, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
Length = 391
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 168 DEFMSAVKQNYGEKVLIQFEDFAN-------HNAFELLAKY 201
+EF+S VK+ +G +V I+ DF++ H A + L KY
Sbjct: 173 EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKY 213
>pdb|1OJL|A Chain A, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|B Chain B, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|C Chain C, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|D Chain D, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|E Chain E, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|F Chain F, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
Length = 304
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 305 VNNLLDAVKVIKP---TILI-GSSGVGRTFTKEVIEAMASFNEKPLIL----ALSNPTSQ 356
+ +LL+ + ++ P T+LI G SG G+ + A ++ +++PL+ AL+ +
Sbjct: 11 MQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70
Query: 357 SECTAEE--AYTWS----KGRAIFASG 377
SE E A+T + +GR + A G
Sbjct: 71 SELFGHEKGAFTGADKRREGRFVEADG 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,887,905
Number of Sequences: 62578
Number of extensions: 571726
Number of successful extensions: 1468
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1409
Number of HSP's gapped (non-prelim): 29
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)