Query 010990
Match_columns 496
No_of_seqs 134 out of 1145
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:51:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 2E-198 4E-203 1540.2 42.0 493 2-495 76-568 (582)
2 PRK13529 malate dehydrogenase; 100.0 6E-192 1E-196 1522.4 46.2 492 1-496 61-561 (563)
3 PLN03129 NADP-dependent malic 100.0 1E-191 3E-196 1524.4 46.1 496 1-496 86-581 (581)
4 PTZ00317 NADP-dependent malic 100.0 2E-189 4E-194 1501.9 46.0 489 1-491 63-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 1E-119 3E-124 933.1 31.2 412 3-495 13-431 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 2E-112 5E-117 940.3 34.7 368 38-484 35-419 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 5E-111 1E-115 934.7 34.8 368 38-485 39-424 (763)
8 PRK07232 bifunctional malic en 100.0 7E-110 2E-114 921.0 35.6 372 38-487 31-421 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 7E-100 2E-104 759.7 29.2 277 212-490 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 3.9E-96 8E-101 724.8 19.7 252 212-465 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 2.8E-93 6.1E-98 703.7 25.6 251 212-464 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 5.6E-83 1.2E-87 602.1 11.1 182 21-202 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 2.6E-58 5.6E-63 448.9 21.9 223 212-464 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 2.5E-08 5.5E-13 83.3 11.5 86 214-351 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.8 0.00039 8.4E-09 74.8 14.3 159 157-354 105-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.4 0.00079 1.7E-08 71.9 9.7 122 213-362 158-285 (417)
17 PLN02477 glutamate dehydrogena 97.3 0.0063 1.4E-07 65.3 15.8 186 158-366 112-324 (410)
18 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0029 6.4E-08 62.2 12.2 130 215-366 2-140 (217)
19 PRK14031 glutamate dehydrogena 97.3 0.013 2.9E-07 63.5 17.9 180 158-352 134-344 (444)
20 PRK09414 glutamate dehydrogena 97.2 0.016 3.5E-07 62.9 17.7 188 158-366 138-357 (445)
21 cd00401 AdoHcyase S-adenosyl-L 97.2 0.0051 1.1E-07 66.1 13.6 129 204-366 163-302 (413)
22 cd05213 NAD_bind_Glutamyl_tRNA 97.1 0.0023 4.9E-08 65.7 9.8 136 192-354 139-276 (311)
23 TIGR00936 ahcY adenosylhomocys 97.1 0.0079 1.7E-07 64.5 13.5 127 204-364 156-293 (406)
24 PRK00045 hemA glutamyl-tRNA re 97.0 0.0024 5.2E-08 68.3 9.3 124 214-361 161-287 (423)
25 PTZ00079 NADP-specific glutama 97.0 0.048 1E-06 59.4 18.3 189 158-366 143-366 (454)
26 PLN02494 adenosylhomocysteinas 96.9 0.011 2.5E-07 64.4 13.1 130 204-367 215-355 (477)
27 PRK14030 glutamate dehydrogena 96.9 0.05 1.1E-06 59.1 17.5 189 158-366 134-357 (445)
28 TIGR02853 spore_dpaA dipicolin 96.8 0.0089 1.9E-07 61.0 10.6 138 212-379 127-265 (287)
29 cd01080 NAD_bind_m-THF_DH_Cycl 96.7 0.012 2.6E-07 55.9 10.0 92 218-354 27-119 (168)
30 cd01076 NAD_bind_1_Glu_DH NAD( 96.7 0.011 2.4E-07 58.5 9.7 123 213-354 8-140 (227)
31 PF01488 Shikimate_DH: Shikima 96.6 0.0024 5.2E-08 57.8 4.5 100 233-354 9-112 (135)
32 PTZ00075 Adenosylhomocysteinas 96.5 0.038 8.3E-07 60.5 13.4 123 204-354 215-344 (476)
33 PRK14192 bifunctional 5,10-met 96.5 0.019 4.2E-07 58.7 10.4 108 214-365 137-249 (283)
34 COG0373 HemA Glutamyl-tRNA red 96.4 0.016 3.6E-07 62.3 9.7 214 192-467 139-360 (414)
35 PRK14982 acyl-ACP reductase; P 96.3 0.026 5.6E-07 59.3 10.2 113 215-354 134-249 (340)
36 cd01075 NAD_bind_Leu_Phe_Val_D 96.3 0.028 6.2E-07 54.3 9.8 123 214-366 4-129 (200)
37 PLN00203 glutamyl-tRNA reducta 96.3 0.013 2.9E-07 64.6 8.4 202 213-467 242-455 (519)
38 PRK08306 dipicolinate synthase 96.1 0.046 9.9E-07 56.1 11.0 127 219-379 135-266 (296)
39 cd05313 NAD_bind_2_Glu_DH NAD( 96.0 0.089 1.9E-06 53.3 12.4 133 214-366 16-167 (254)
40 PRK08293 3-hydroxybutyryl-CoA 96.0 0.1 2.2E-06 52.8 12.8 193 237-483 4-221 (287)
41 PLN00106 malate dehydrogenase 96.0 0.044 9.5E-07 57.2 10.1 118 221-354 4-138 (323)
42 PRK13940 glutamyl-tRNA reducta 95.9 0.026 5.7E-07 60.6 8.4 195 214-467 160-359 (414)
43 PRK12549 shikimate 5-dehydroge 95.8 0.027 5.9E-07 57.4 7.6 90 221-327 112-203 (284)
44 PRK14175 bifunctional 5,10-met 95.7 0.036 7.7E-07 57.0 8.2 97 213-353 135-232 (286)
45 cd01065 NAD_bind_Shikimate_DH 95.6 0.04 8.7E-07 49.6 7.2 108 221-354 4-120 (155)
46 PF00208 ELFV_dehydrog: Glutam 95.3 0.039 8.4E-07 55.3 6.7 128 211-354 6-151 (244)
47 cd01078 NAD_bind_H4MPT_DH NADP 95.2 0.097 2.1E-06 49.6 8.7 54 215-280 7-61 (194)
48 TIGR00518 alaDH alanine dehydr 95.2 0.057 1.2E-06 57.1 7.9 95 234-352 165-268 (370)
49 PRK00676 hemA glutamyl-tRNA re 94.9 0.12 2.6E-06 54.4 9.0 91 232-355 170-265 (338)
50 TIGR02356 adenyl_thiF thiazole 94.8 0.068 1.5E-06 51.7 6.5 38 232-280 17-54 (202)
51 TIGR01809 Shik-DH-AROM shikima 94.6 0.073 1.6E-06 54.1 6.5 102 205-334 100-208 (282)
52 cd00650 LDH_MDH_like NAD-depen 94.6 0.059 1.3E-06 53.8 5.7 127 239-378 1-145 (263)
53 cd05291 HicDH_like L-2-hydroxy 94.6 0.096 2.1E-06 53.6 7.3 125 238-379 2-144 (306)
54 PRK10792 bifunctional 5,10-met 94.5 0.34 7.4E-06 50.0 11.1 94 214-351 137-231 (285)
55 PF03807 F420_oxidored: NADP o 94.5 0.054 1.2E-06 45.2 4.3 94 238-353 1-96 (96)
56 cd05296 GH4_P_beta_glucosidase 94.5 0.073 1.6E-06 57.4 6.3 126 237-377 1-166 (419)
57 PF00670 AdoHcyase_NAD: S-aden 94.3 0.26 5.5E-06 47.0 8.8 119 213-365 3-122 (162)
58 PTZ00082 L-lactate dehydrogena 94.1 0.18 3.9E-06 52.4 8.1 124 236-378 6-154 (321)
59 cd00757 ThiF_MoeB_HesA_family 94.0 0.17 3.7E-06 49.6 7.4 38 232-280 17-54 (228)
60 PRK08644 thiamine biosynthesis 93.8 0.21 4.5E-06 48.9 7.4 38 232-280 24-61 (212)
61 PTZ00117 malate dehydrogenase; 93.8 0.27 5.7E-06 51.0 8.6 126 235-378 4-148 (319)
62 TIGR02354 thiF_fam2 thiamine b 93.7 0.091 2E-06 51.0 4.9 108 232-359 17-127 (200)
63 PRK05086 malate dehydrogenase; 93.7 0.4 8.6E-06 49.6 9.7 104 237-354 1-121 (312)
64 cd05197 GH4_glycoside_hydrolas 93.7 0.15 3.3E-06 55.1 6.9 125 237-377 1-166 (425)
65 PRK14191 bifunctional 5,10-met 93.7 0.24 5.1E-06 51.1 7.9 83 216-336 137-220 (285)
66 PRK00066 ldh L-lactate dehydro 93.5 0.16 3.4E-06 52.6 6.4 126 237-379 7-149 (315)
67 PRK08223 hypothetical protein; 93.5 0.14 3E-06 52.8 5.9 127 195-353 4-154 (287)
68 PRK06223 malate dehydrogenase; 93.4 0.18 3.8E-06 51.3 6.5 118 237-379 3-146 (307)
69 TIGR00561 pntA NAD(P) transhyd 93.4 0.42 9.1E-06 53.0 9.7 213 85-340 28-276 (511)
70 PRK08762 molybdopterin biosynt 93.2 0.21 4.6E-06 52.7 7.0 103 232-350 131-257 (376)
71 PRK09260 3-hydroxybutyryl-CoA 93.2 0.22 4.8E-06 50.2 6.8 123 237-384 2-145 (288)
72 COG0334 GdhA Glutamate dehydro 93.2 2.8 6.1E-05 45.4 15.3 186 158-366 112-325 (411)
73 PRK12749 quinate/shikimate deh 93.2 0.19 4.1E-06 51.5 6.4 49 221-280 109-157 (288)
74 PRK08328 hypothetical protein; 93.2 0.051 1.1E-06 53.7 2.1 118 198-354 7-130 (231)
75 PRK08605 D-lactate dehydrogena 93.1 1.4 3E-05 45.9 12.8 155 168-354 59-239 (332)
76 PRK12475 thiamine/molybdopteri 93.1 0.12 2.6E-06 54.2 4.8 39 232-281 20-58 (338)
77 cd01079 NAD_bind_m-THF_DH NAD 93.1 0.52 1.1E-05 46.3 8.8 102 218-336 35-147 (197)
78 PRK12548 shikimate 5-dehydroge 93.0 0.26 5.7E-06 50.2 7.1 58 204-280 102-159 (289)
79 PRK09424 pntA NAD(P) transhydr 93.0 0.71 1.5E-05 51.2 10.9 229 85-361 29-296 (509)
80 cd05212 NAD_bind_m-THF_DH_Cycl 93.0 0.87 1.9E-05 42.1 9.8 82 217-336 9-91 (140)
81 PRK00257 erythronate-4-phospha 92.7 0.83 1.8E-05 48.8 10.6 119 203-353 80-209 (381)
82 PRK05690 molybdopterin biosynt 92.6 0.32 6.8E-06 48.6 6.8 38 232-280 28-65 (245)
83 cd01487 E1_ThiF_like E1_ThiF_l 92.5 0.38 8.3E-06 45.6 7.0 32 238-280 1-32 (174)
84 PRK06035 3-hydroxyacyl-CoA deh 92.5 5.3 0.00011 40.4 15.5 32 237-280 4-35 (291)
85 PRK14027 quinate/shikimate deh 92.4 0.27 5.9E-06 50.3 6.3 48 222-280 113-160 (283)
86 TIGR02355 moeB molybdopterin s 92.4 0.39 8.4E-06 47.9 7.2 38 232-280 20-57 (240)
87 PRK07688 thiamine/molybdopteri 92.4 0.16 3.4E-06 53.3 4.6 38 232-280 20-57 (339)
88 PRK14194 bifunctional 5,10-met 92.4 0.5 1.1E-05 49.1 8.2 93 215-351 138-231 (301)
89 PRK15076 alpha-galactosidase; 92.4 0.32 7E-06 52.6 7.1 129 237-381 2-174 (431)
90 PRK07531 bifunctional 3-hydrox 92.3 1.1 2.4E-05 49.1 11.2 123 237-384 5-144 (495)
91 PF01210 NAD_Gly3P_dh_N: NAD-d 92.3 0.21 4.6E-06 46.1 4.9 85 238-342 1-93 (157)
92 PRK14189 bifunctional 5,10-met 92.2 0.51 1.1E-05 48.7 7.9 85 214-336 136-221 (285)
93 PF00056 Ldh_1_N: lactate/mala 92.2 0.093 2E-06 48.1 2.3 115 237-367 1-131 (141)
94 PRK06129 3-hydroxyacyl-CoA deh 92.1 0.25 5.5E-06 50.4 5.6 32 237-280 3-34 (308)
95 PLN02928 oxidoreductase family 91.9 1.3 2.8E-05 46.6 10.7 123 213-354 120-265 (347)
96 PRK14176 bifunctional 5,10-met 91.9 0.64 1.4E-05 48.0 8.2 85 214-336 142-227 (287)
97 PTZ00325 malate dehydrogenase; 91.8 1 2.2E-05 47.1 9.7 106 234-354 6-128 (321)
98 PRK05600 thiamine biosynthesis 91.8 0.46 1E-05 50.5 7.3 102 232-349 37-162 (370)
99 PRK15438 erythronate-4-phospha 91.7 1.2 2.5E-05 47.7 10.2 118 203-352 80-208 (378)
100 cd05297 GH4_alpha_glucosidase_ 91.7 0.44 9.5E-06 51.3 7.1 124 238-377 2-167 (423)
101 PRK11880 pyrroline-5-carboxyla 91.4 2.4 5.3E-05 41.9 11.6 96 237-355 3-98 (267)
102 PRK00258 aroE shikimate 5-dehy 91.4 0.46 9.9E-06 48.0 6.5 87 221-327 107-196 (278)
103 TIGR01758 MDH_euk_cyt malate d 91.4 1.2 2.5E-05 46.6 9.6 134 238-381 1-154 (324)
104 TIGR01763 MalateDH_bact malate 91.4 0.66 1.4E-05 47.8 7.7 124 237-378 2-144 (305)
105 PRK07878 molybdopterin biosynt 91.4 0.51 1.1E-05 50.3 7.1 103 232-350 38-164 (392)
106 TIGR02992 ectoine_eutC ectoine 91.3 0.86 1.9E-05 47.3 8.6 116 222-364 117-238 (326)
107 PRK06130 3-hydroxybutyryl-CoA 91.3 0.73 1.6E-05 46.8 7.9 32 237-280 5-36 (311)
108 PRK14851 hypothetical protein; 91.3 0.86 1.9E-05 52.2 9.2 121 232-370 39-194 (679)
109 PF02826 2-Hacid_dh_C: D-isome 91.3 0.75 1.6E-05 43.4 7.4 100 227-354 27-130 (178)
110 PF00899 ThiF: ThiF family; I 91.2 0.36 7.8E-06 43.2 5.0 35 235-280 1-35 (135)
111 cd00704 MDH Malate dehydrogena 91.1 0.88 1.9E-05 47.4 8.4 120 238-367 2-139 (323)
112 PRK14619 NAD(P)H-dependent gly 90.8 2 4.4E-05 43.8 10.6 33 236-280 4-36 (308)
113 cd00755 YgdL_like Family of ac 90.8 0.39 8.5E-06 47.8 5.3 105 233-356 8-116 (231)
114 PRK14178 bifunctional 5,10-met 90.8 0.7 1.5E-05 47.6 7.1 85 214-336 130-215 (279)
115 PRK05597 molybdopterin biosynt 90.8 0.6 1.3E-05 49.2 6.9 105 232-352 24-152 (355)
116 cd01336 MDH_cytoplasmic_cytoso 90.6 1.5 3.3E-05 45.7 9.6 131 238-378 4-154 (325)
117 COG0169 AroE Shikimate 5-dehyd 90.5 0.58 1.3E-05 48.2 6.3 48 222-280 110-159 (283)
118 PF02056 Glyco_hydro_4: Family 90.0 0.49 1.1E-05 45.8 5.0 105 238-354 1-147 (183)
119 cd01492 Aos1_SUMO Ubiquitin ac 89.6 0.33 7.2E-06 46.9 3.5 77 232-325 17-97 (197)
120 PRK14183 bifunctional 5,10-met 89.4 1.4 3E-05 45.5 8.0 85 214-336 135-220 (281)
121 PRK07411 hypothetical protein; 89.3 0.98 2.1E-05 48.2 7.1 102 232-349 34-159 (390)
122 cd01337 MDH_glyoxysomal_mitoch 89.2 1.9 4.1E-05 44.9 8.9 102 238-354 2-120 (310)
123 PRK12550 shikimate 5-dehydroge 89.1 0.87 1.9E-05 46.4 6.3 48 221-280 108-155 (272)
124 PF02882 THF_DHG_CYH_C: Tetrah 89.0 1.9 4.1E-05 40.9 8.1 84 215-336 15-99 (160)
125 COG0578 GlpA Glycerol-3-phosph 89.0 2.4 5.1E-05 47.4 9.9 163 234-469 10-179 (532)
126 cd05298 GH4_GlvA_pagL_like Gly 88.9 0.83 1.8E-05 49.7 6.3 105 237-354 1-146 (437)
127 cd05293 LDH_1 A subgroup of L- 88.9 1.2 2.6E-05 46.2 7.3 126 237-379 4-147 (312)
128 PRK14177 bifunctional 5,10-met 88.9 2 4.4E-05 44.3 8.8 83 216-336 139-222 (284)
129 PLN02527 aspartate carbamoyltr 88.7 29 0.00062 36.2 17.1 131 174-326 92-228 (306)
130 PRK14190 bifunctional 5,10-met 88.6 1.6 3.4E-05 45.1 7.8 85 214-336 136-221 (284)
131 PRK14179 bifunctional 5,10-met 88.6 1.6 3.4E-05 45.2 7.7 84 215-336 137-221 (284)
132 COG0111 SerA Phosphoglycerate 88.6 2.9 6.3E-05 43.8 9.8 111 204-339 89-224 (324)
133 PF01262 AlaDh_PNT_C: Alanine 88.4 0.19 4.1E-06 47.0 0.9 90 234-339 18-130 (168)
134 TIGR01915 npdG NADPH-dependent 88.2 1.9 4.1E-05 41.9 7.8 96 238-356 2-106 (219)
135 PRK13243 glyoxylate reductase; 88.2 3.3 7.1E-05 43.3 10.0 170 203-407 89-292 (333)
136 PRK08291 ectoine utilization p 88.0 1.7 3.8E-05 45.1 7.8 116 221-363 119-240 (330)
137 PRK07574 formate dehydrogenase 87.5 4.6 9.9E-05 43.4 10.7 146 203-377 136-308 (385)
138 PRK14184 bifunctional 5,10-met 87.3 1.9 4.1E-05 44.6 7.4 89 214-336 135-224 (286)
139 TIGR01772 MDH_euk_gproteo mala 87.3 3.6 7.7E-05 42.9 9.5 126 238-378 1-146 (312)
140 PRK14188 bifunctional 5,10-met 87.1 1.9 4.1E-05 44.7 7.4 82 215-334 137-219 (296)
141 PRK14172 bifunctional 5,10-met 87.1 2.6 5.6E-05 43.5 8.2 84 215-336 137-221 (278)
142 PRK07634 pyrroline-5-carboxyla 87.0 1.4 3E-05 42.9 6.1 118 235-377 3-121 (245)
143 PRK14174 bifunctional 5,10-met 86.9 2.1 4.6E-05 44.4 7.6 87 216-336 139-226 (295)
144 cd01485 E1-1_like Ubiquitin ac 86.9 0.59 1.3E-05 45.2 3.3 38 232-280 15-52 (198)
145 PRK08374 homoserine dehydrogen 86.8 3.5 7.5E-05 43.2 9.2 103 237-348 3-120 (336)
146 PLN02306 hydroxypyruvate reduc 86.7 5.2 0.00011 42.9 10.6 129 202-352 107-273 (386)
147 PLN02516 methylenetetrahydrofo 85.9 3.1 6.7E-05 43.3 8.1 85 214-336 145-230 (299)
148 cd01338 MDH_choloroplast_like 85.8 4.3 9.3E-05 42.4 9.2 122 237-368 3-142 (322)
149 PRK12921 2-dehydropantoate 2-r 85.8 3.6 7.8E-05 41.2 8.5 100 238-355 2-106 (305)
150 PRK15116 sulfur acceptor prote 85.8 2.3 5E-05 43.5 7.1 106 232-356 26-135 (268)
151 TIGR00872 gnd_rel 6-phosphoglu 85.7 2.4 5.3E-05 43.2 7.3 98 238-362 2-102 (298)
152 PRK07066 3-hydroxybutyryl-CoA 85.6 2.1 4.5E-05 44.8 6.8 32 237-280 8-39 (321)
153 TIGR03140 AhpF alkyl hydropero 85.5 1.3 2.8E-05 48.6 5.5 96 169-279 137-243 (515)
154 PRK00094 gpsA NAD(P)H-dependen 85.5 1.4 3.1E-05 44.5 5.4 101 238-354 3-108 (325)
155 PRK07679 pyrroline-5-carboxyla 85.5 23 0.00049 35.6 14.0 99 236-354 3-102 (279)
156 cd01339 LDH-like_MDH L-lactate 85.3 1.7 3.8E-05 44.2 6.0 117 239-378 1-141 (300)
157 PRK14193 bifunctional 5,10-met 85.2 3.4 7.3E-05 42.8 8.0 86 215-336 137-223 (284)
158 TIGR01759 MalateDH-SF1 malate 85.2 4.4 9.6E-05 42.4 9.0 121 238-368 5-143 (323)
159 PRK01710 murD UDP-N-acetylmura 85.0 5.5 0.00012 43.0 9.9 111 234-378 12-125 (458)
160 TIGR01381 E1_like_apg7 E1-like 84.9 0.89 1.9E-05 51.8 3.9 40 232-282 334-373 (664)
161 PRK15317 alkyl hydroperoxide r 84.8 1.4 3.1E-05 48.2 5.4 85 184-280 148-243 (517)
162 PRK14618 NAD(P)H-dependent gly 84.7 1.3 2.8E-05 45.5 4.7 95 237-354 5-107 (328)
163 PLN02545 3-hydroxybutyryl-CoA 84.5 33 0.00072 34.6 14.8 32 237-280 5-36 (295)
164 PRK14168 bifunctional 5,10-met 84.5 4.1 8.9E-05 42.4 8.3 89 214-336 139-228 (297)
165 PRK14187 bifunctional 5,10-met 84.4 4.2 9.2E-05 42.2 8.3 85 214-336 138-223 (294)
166 PRK06141 ornithine cyclodeamin 84.4 7.7 0.00017 40.1 10.3 105 234-363 123-232 (314)
167 COG0686 Ald Alanine dehydrogen 84.2 1.6 3.6E-05 45.9 5.2 106 234-363 166-290 (371)
168 PTZ00345 glycerol-3-phosphate 84.1 3.9 8.3E-05 43.6 8.1 24 234-257 9-32 (365)
169 cd05292 LDH_2 A subgroup of L- 84.1 2 4.3E-05 44.3 5.8 126 238-380 2-144 (308)
170 PRK14171 bifunctional 5,10-met 84.1 4.3 9.2E-05 42.1 8.2 86 213-336 136-222 (288)
171 PRK09599 6-phosphogluconate de 84.1 5.5 0.00012 40.6 9.0 93 238-354 2-97 (301)
172 PRK14170 bifunctional 5,10-met 84.0 4.4 9.5E-05 42.0 8.1 85 214-336 135-220 (284)
173 PRK06436 glycerate dehydrogena 83.9 16 0.00035 37.8 12.4 92 231-354 117-212 (303)
174 cd01483 E1_enzyme_family Super 83.9 1.5 3.2E-05 39.5 4.2 32 238-280 1-32 (143)
175 TIGR01285 nifN nitrogenase mol 83.7 1.8 3.9E-05 46.8 5.6 80 225-325 300-382 (432)
176 PRK05442 malate dehydrogenase; 83.6 7 0.00015 40.9 9.7 121 238-368 6-144 (326)
177 PRK14166 bifunctional 5,10-met 83.6 3.9 8.4E-05 42.3 7.6 86 213-336 134-220 (282)
178 PRK07231 fabG 3-ketoacyl-(acyl 83.5 3.9 8.4E-05 38.9 7.2 36 233-280 2-38 (251)
179 KOG2337 Ubiquitin activating E 83.4 0.98 2.1E-05 50.2 3.3 38 234-282 338-375 (669)
180 PRK10886 DnaA initiator-associ 83.4 5.2 0.00011 39.0 8.0 148 234-433 39-187 (196)
181 KOG0029 Amine oxidase [Seconda 82.8 0.61 1.3E-05 51.6 1.5 25 234-258 13-37 (501)
182 PRK12480 D-lactate dehydrogena 82.6 9 0.00019 40.1 10.0 120 203-353 91-236 (330)
183 PLN02602 lactate dehydrogenase 82.4 2.9 6.3E-05 44.3 6.3 124 237-378 38-180 (350)
184 PF07992 Pyr_redox_2: Pyridine 82.3 2.1 4.5E-05 39.5 4.7 32 238-281 1-32 (201)
185 PRK06522 2-dehydropantoate 2-r 82.1 4.2 9.2E-05 40.5 7.2 100 238-354 2-103 (304)
186 TIGR01408 Ube1 ubiquitin-activ 82.1 0.64 1.4E-05 55.5 1.4 43 232-280 415-457 (1008)
187 cd05290 LDH_3 A subgroup of L- 82.1 3.8 8.2E-05 42.5 6.9 123 238-378 1-145 (307)
188 PRK06476 pyrroline-5-carboxyla 82.1 18 0.00038 35.9 11.4 95 238-354 2-96 (258)
189 PRK14169 bifunctional 5,10-met 82.0 6 0.00013 40.9 8.2 85 214-336 134-219 (282)
190 TIGR00507 aroE shikimate 5-deh 81.4 3.5 7.5E-05 41.4 6.2 48 221-280 102-149 (270)
191 PRK06153 hypothetical protein; 81.4 2.9 6.2E-05 45.1 5.9 101 232-354 172-278 (393)
192 PRK09880 L-idonate 5-dehydroge 81.4 15 0.00032 37.5 10.9 46 222-279 157-202 (343)
193 PRK09310 aroDE bifunctional 3- 81.3 3 6.5E-05 45.7 6.2 48 221-280 317-364 (477)
194 PRK14185 bifunctional 5,10-met 81.2 7.1 0.00015 40.6 8.5 88 215-336 136-224 (293)
195 PLN03139 formate dehydrogenase 81.1 10 0.00022 40.8 9.9 189 184-406 125-343 (386)
196 PRK07680 late competence prote 80.9 3.4 7.3E-05 41.4 5.9 98 238-355 2-100 (273)
197 PRK08410 2-hydroxyacid dehydro 80.3 16 0.00034 37.9 10.7 119 203-353 85-234 (311)
198 PRK14180 bifunctional 5,10-met 80.3 6.9 0.00015 40.5 8.0 86 213-336 135-221 (282)
199 cd05294 LDH-like_MDH_nadp A la 80.2 11 0.00023 39.1 9.4 120 238-378 2-147 (309)
200 PRK14182 bifunctional 5,10-met 80.2 7.6 0.00017 40.2 8.3 83 216-336 137-220 (282)
201 PRK14173 bifunctional 5,10-met 80.0 7.3 0.00016 40.4 8.1 84 215-336 134-218 (287)
202 PRK15469 ghrA bifunctional gly 80.0 14 0.0003 38.4 10.2 168 204-405 84-277 (312)
203 PRK14181 bifunctional 5,10-met 79.8 7.9 0.00017 40.2 8.3 89 214-336 131-220 (287)
204 PLN02616 tetrahydrofolate dehy 79.8 7.1 0.00015 41.8 8.1 86 213-336 208-294 (364)
205 PLN00112 malate dehydrogenase 79.4 7.1 0.00015 42.8 8.1 132 237-378 101-252 (444)
206 KOG0685 Flavin-containing amin 79.1 0.98 2.1E-05 49.7 1.5 26 232-257 17-42 (498)
207 TIGR01771 L-LDH-NAD L-lactate 79.1 3.2 6.9E-05 42.8 5.2 123 241-378 1-139 (299)
208 PRK14186 bifunctional 5,10-met 78.7 10 0.00022 39.6 8.7 84 215-336 137-221 (297)
209 PRK12439 NAD(P)H-dependent gly 78.4 3.2 7E-05 43.2 5.1 103 236-354 7-114 (341)
210 PRK07877 hypothetical protein; 78.1 5.4 0.00012 46.2 7.1 101 232-351 103-229 (722)
211 PF13738 Pyr_redox_3: Pyridine 77.9 2.5 5.4E-05 39.3 3.7 30 240-280 1-30 (203)
212 cd01491 Ube1_repeat1 Ubiquitin 77.9 2.1 4.6E-05 44.1 3.5 38 232-280 15-52 (286)
213 PRK06487 glycerate dehydrogena 77.8 48 0.001 34.4 13.4 188 203-432 88-308 (317)
214 PRK15409 bifunctional glyoxyla 77.7 18 0.00038 37.8 10.2 122 203-352 88-237 (323)
215 PRK14167 bifunctional 5,10-met 77.6 10 0.00022 39.6 8.3 87 216-336 137-224 (297)
216 cd00300 LDH_like L-lactate deh 77.5 5 0.00011 41.2 6.0 123 239-378 1-141 (300)
217 PLN02819 lysine-ketoglutarate 77.3 8.8 0.00019 46.3 8.7 23 236-258 203-225 (1042)
218 TIGR03693 ocin_ThiF_like putat 77.1 11 0.00024 43.0 8.9 131 162-327 69-215 (637)
219 TIGR02279 PaaC-3OHAcCoADH 3-hy 77.0 19 0.00041 39.9 10.7 37 390-426 185-221 (503)
220 PF00070 Pyr_redox: Pyridine n 77.0 4.9 0.00011 32.6 4.7 35 238-284 1-35 (80)
221 PRK13938 phosphoheptose isomer 76.9 8.3 0.00018 37.6 7.1 99 235-348 44-145 (196)
222 TIGR02371 ala_DH_arch alanine 76.8 15 0.00033 38.2 9.4 105 235-364 127-236 (325)
223 PRK12490 6-phosphogluconate de 76.6 12 0.00027 38.1 8.5 93 238-354 2-97 (299)
224 COG0345 ProC Pyrroline-5-carbo 76.2 13 0.00029 38.1 8.6 106 237-369 2-108 (266)
225 PRK13581 D-3-phosphoglycerate 76.2 43 0.00093 37.3 13.2 206 203-446 86-316 (526)
226 cd01486 Apg7 Apg7 is an E1-lik 76.2 3.3 7.2E-05 43.3 4.3 32 238-280 1-32 (307)
227 COG1486 CelF Alpha-galactosida 76.2 5.1 0.00011 43.9 5.9 120 235-369 2-161 (442)
228 PRK01713 ornithine carbamoyltr 76.1 19 0.0004 38.0 9.9 137 168-324 92-233 (334)
229 cd08237 ribitol-5-phosphate_DH 75.7 60 0.0013 33.3 13.4 35 235-279 163-197 (341)
230 cd01484 E1-2_like Ubiquitin ac 75.6 3.6 7.8E-05 41.2 4.3 32 238-280 1-32 (234)
231 PRK07340 ornithine cyclodeamin 75.5 20 0.00043 37.0 9.8 105 234-364 123-231 (304)
232 PF01494 FAD_binding_3: FAD bi 75.3 3.5 7.6E-05 40.9 4.1 35 237-283 2-36 (356)
233 PRK02472 murD UDP-N-acetylmura 75.1 8.2 0.00018 41.1 7.1 35 234-280 3-37 (447)
234 PRK09754 phenylpropionate diox 75.0 4.3 9.4E-05 42.7 4.9 36 235-280 2-37 (396)
235 PF02737 3HCDH_N: 3-hydroxyacy 74.9 4.3 9.3E-05 38.6 4.4 96 238-348 1-110 (180)
236 PF01113 DapB_N: Dihydrodipico 74.9 4.6 0.0001 36.0 4.4 96 238-350 2-98 (124)
237 PRK08229 2-dehydropantoate 2-r 74.8 6.4 0.00014 40.3 6.0 102 237-355 3-111 (341)
238 PRK02842 light-independent pro 74.8 13 0.00029 40.0 8.7 88 222-324 276-368 (427)
239 COG2423 Predicted ornithine cy 74.7 11 0.00023 39.9 7.7 122 218-366 114-241 (330)
240 COG0476 ThiF Dinucleotide-util 74.7 4 8.7E-05 40.5 4.4 39 231-280 25-63 (254)
241 PLN02897 tetrahydrofolate dehy 74.7 11 0.00025 40.0 7.8 85 214-336 192-277 (345)
242 PF02423 OCD_Mu_crystall: Orni 74.7 5.1 0.00011 41.5 5.2 104 236-364 128-238 (313)
243 PRK06932 glycerate dehydrogena 74.2 14 0.0003 38.3 8.3 140 232-406 143-289 (314)
244 KOG0069 Glyoxylate/hydroxypyru 74.1 26 0.00055 37.3 10.3 164 214-412 120-310 (336)
245 TIGR01327 PGDH D-3-phosphoglyc 73.9 1.1E+02 0.0023 34.2 15.6 195 203-434 84-303 (525)
246 KOG2250 Glutamate/leucine/phen 73.1 32 0.00069 38.3 10.9 184 164-367 161-380 (514)
247 COG0240 GpsA Glycerol-3-phosph 73.0 6.7 0.00015 41.4 5.7 94 237-351 2-105 (329)
248 COG5322 Predicted dehydrogenas 72.9 5.6 0.00012 41.4 4.9 51 207-257 138-189 (351)
249 cd01488 Uba3_RUB Ubiquitin act 72.8 4.4 9.6E-05 42.0 4.2 32 238-280 1-32 (291)
250 PLN02520 bifunctional 3-dehydr 72.8 7.8 0.00017 43.2 6.4 38 231-280 374-411 (529)
251 COG1179 Dinucleotide-utilizing 72.2 3.3 7.1E-05 42.3 3.0 42 233-285 27-68 (263)
252 COG0190 FolD 5,10-methylene-te 71.9 11 0.00024 39.1 6.8 88 212-337 132-220 (283)
253 PRK07502 cyclohexadienyl dehyd 71.6 24 0.00051 36.0 9.2 34 237-280 7-40 (307)
254 TIGR03376 glycerol3P_DH glycer 71.3 7.7 0.00017 41.0 5.7 20 238-257 1-20 (342)
255 PRK06823 ornithine cyclodeamin 70.9 28 0.00061 36.3 9.7 106 235-365 127-237 (315)
256 TIGR01292 TRX_reduct thioredox 70.8 5.1 0.00011 39.2 4.0 31 238-280 2-32 (300)
257 PRK06407 ornithine cyclodeamin 70.7 12 0.00025 38.7 6.8 105 235-364 116-226 (301)
258 PRK09490 metH B12-dependent me 70.5 43 0.00092 41.4 12.2 120 168-330 441-572 (1229)
259 PRK11790 D-3-phosphoglycerate 69.8 99 0.0021 33.4 13.8 195 202-435 96-319 (409)
260 PRK00536 speE spermidine synth 69.7 4.4 9.4E-05 41.4 3.3 101 237-380 74-175 (262)
261 cd01489 Uba2_SUMO Ubiquitin ac 69.5 6.3 0.00014 41.2 4.5 99 238-352 1-124 (312)
262 PRK14620 NAD(P)H-dependent gly 69.4 12 0.00026 38.4 6.5 31 238-280 2-32 (326)
263 PF03446 NAD_binding_2: NAD bi 68.4 6 0.00013 36.6 3.7 102 237-366 2-107 (163)
264 TIGR00873 gnd 6-phosphoglucona 68.3 12 0.00027 41.1 6.7 95 238-352 1-99 (467)
265 PTZ00142 6-phosphogluconate de 67.9 14 0.0003 40.8 6.9 97 238-354 3-104 (470)
266 TIGR02082 metH 5-methyltetrahy 67.8 67 0.0014 39.6 13.1 119 169-330 426-556 (1178)
267 TIGR02028 ChlP geranylgeranyl 67.6 6.1 0.00013 41.8 4.1 31 238-280 2-32 (398)
268 PRK13937 phosphoheptose isomer 67.5 23 0.0005 33.8 7.6 22 316-339 106-127 (188)
269 PF05834 Lycopene_cycl: Lycope 67.4 6.8 0.00015 41.1 4.3 35 239-283 2-36 (374)
270 PRK08618 ornithine cyclodeamin 67.3 13 0.00028 38.6 6.3 102 235-362 126-233 (325)
271 cd05710 SIS_1 A subgroup of th 67.3 35 0.00075 30.0 8.2 59 317-384 48-109 (120)
272 TIGR03366 HpnZ_proposed putati 67.3 17 0.00036 36.1 6.9 47 221-279 107-153 (280)
273 COG0039 Mdh Malate/lactate deh 66.7 25 0.00055 36.9 8.3 103 237-354 1-121 (313)
274 TIGR02023 BchP-ChlP geranylger 66.3 6.9 0.00015 40.9 4.1 31 238-280 2-32 (388)
275 PRK11883 protoporphyrinogen ox 66.3 4 8.7E-05 42.8 2.4 22 237-258 1-22 (451)
276 PRK06847 hypothetical protein; 66.2 7.8 0.00017 39.7 4.4 33 236-280 4-36 (375)
277 PRK06184 hypothetical protein; 66.1 7.4 0.00016 42.3 4.4 35 235-281 2-36 (502)
278 PRK12409 D-amino acid dehydrog 65.5 7.8 0.00017 40.6 4.3 33 237-281 2-34 (410)
279 PRK07236 hypothetical protein; 65.5 8.8 0.00019 40.0 4.7 24 234-257 4-27 (386)
280 PRK12429 3-hydroxybutyrate deh 65.0 22 0.00048 33.9 7.1 35 234-280 2-37 (258)
281 PRK06719 precorrin-2 dehydroge 64.9 9.6 0.00021 35.6 4.4 36 233-280 10-45 (157)
282 cd05006 SIS_GmhA Phosphoheptos 64.8 42 0.0009 31.3 8.7 22 316-339 101-122 (177)
283 PRK08163 salicylate hydroxylas 64.6 8.2 0.00018 40.0 4.3 22 236-257 4-25 (396)
284 PLN02688 pyrroline-5-carboxyla 64.4 13 0.00027 36.8 5.4 94 238-354 2-98 (266)
285 PF03447 NAD_binding_3: Homose 63.7 11 0.00024 32.7 4.3 88 243-348 1-88 (117)
286 PRK00414 gmhA phosphoheptose i 63.7 35 0.00075 32.9 8.1 100 234-348 42-143 (192)
287 TIGR01470 cysG_Nterm siroheme 63.6 10 0.00022 37.0 4.4 36 233-280 6-41 (205)
288 PRK06270 homoserine dehydrogen 63.1 50 0.0011 34.6 9.8 104 237-348 3-123 (341)
289 PRK06718 precorrin-2 dehydroge 63.1 11 0.00023 36.7 4.5 35 233-279 7-41 (202)
290 PRK07364 2-octaprenyl-6-methox 62.9 7.8 0.00017 40.4 3.8 33 236-280 18-50 (415)
291 PF13454 NAD_binding_9: FAD-NA 62.9 7.7 0.00017 35.6 3.3 36 240-282 1-36 (156)
292 TIGR00441 gmhA phosphoheptose 62.8 51 0.0011 30.3 8.8 36 316-353 79-116 (154)
293 TIGR01757 Malate-DH_plant mala 62.7 35 0.00075 36.9 8.6 132 236-379 44-197 (387)
294 PLN02172 flavin-containing mon 62.7 9.8 0.00021 41.6 4.6 25 233-257 7-31 (461)
295 PRK05749 3-deoxy-D-manno-octul 62.6 23 0.0005 37.2 7.3 38 306-348 311-349 (425)
296 KOG1495 Lactate dehydrogenase 62.5 28 0.0006 36.5 7.4 135 232-383 16-168 (332)
297 KOG2304 3-hydroxyacyl-CoA dehy 62.3 8 0.00017 39.4 3.5 34 235-280 10-43 (298)
298 KOG2012 Ubiquitin activating e 62.3 4.6 9.9E-05 47.3 2.0 129 200-374 412-552 (1013)
299 cd01490 Ube1_repeat2 Ubiquitin 62.2 12 0.00026 40.9 5.2 37 238-280 1-37 (435)
300 PRK13512 coenzyme A disulfide 62.2 7.7 0.00017 41.6 3.6 33 238-280 3-35 (438)
301 PRK09126 hypothetical protein; 62.2 9.3 0.0002 39.5 4.2 33 236-280 3-35 (392)
302 TIGR03169 Nterm_to_SelD pyridi 62.2 5.1 0.00011 41.2 2.2 37 238-283 1-37 (364)
303 TIGR00465 ilvC ketol-acid redu 62.1 28 0.0006 36.3 7.6 24 234-257 1-24 (314)
304 PF13580 SIS_2: SIS domain; PD 62.1 16 0.00034 33.1 5.1 105 215-339 19-124 (138)
305 TIGR02622 CDP_4_6_dhtase CDP-g 62.0 20 0.00043 36.7 6.5 101 235-351 3-127 (349)
306 PF01266 DAO: FAD dependent ox 61.8 12 0.00025 37.2 4.6 33 238-282 1-33 (358)
307 PRK06475 salicylate hydroxylas 61.7 8.9 0.00019 40.2 3.9 21 237-257 3-23 (400)
308 COG1052 LdhA Lactate dehydroge 61.5 82 0.0018 33.2 10.9 165 229-432 139-312 (324)
309 PRK12779 putative bifunctional 61.1 11 0.00024 45.0 5.0 40 234-285 304-347 (944)
310 PRK09564 coenzyme A disulfide 61.0 12 0.00027 39.6 4.9 37 237-283 1-37 (444)
311 PRK03515 ornithine carbamoyltr 60.8 79 0.0017 33.5 10.7 132 174-324 96-233 (336)
312 cd05007 SIS_Etherase N-acetylm 60.7 42 0.00092 33.9 8.4 37 316-354 118-156 (257)
313 PRK01438 murD UDP-N-acetylmura 60.6 12 0.00027 40.3 4.9 28 230-257 10-37 (480)
314 PRK04176 ribulose-1,5-biphosph 60.6 10 0.00022 38.1 4.0 35 235-281 24-58 (257)
315 PTZ00245 ubiquitin activating 60.6 8.7 0.00019 39.7 3.5 73 232-322 22-98 (287)
316 PRK06046 alanine dehydrogenase 60.5 39 0.00086 35.1 8.4 104 235-364 128-237 (326)
317 TIGR01790 carotene-cycl lycope 60.5 9.9 0.00021 39.3 4.0 31 239-281 2-32 (388)
318 COG0771 MurD UDP-N-acetylmuram 60.5 52 0.0011 36.3 9.6 35 234-280 5-39 (448)
319 COG2072 TrkA Predicted flavopr 60.3 12 0.00025 40.8 4.6 74 371-447 135-216 (443)
320 PRK06249 2-dehydropantoate 2-r 60.2 25 0.00054 36.0 6.8 103 235-355 4-110 (313)
321 PRK12771 putative glutamate sy 60.2 17 0.00036 40.4 5.9 35 234-280 135-169 (564)
322 PRK15181 Vi polysaccharide bio 60.2 36 0.00078 35.0 8.0 104 231-351 10-141 (348)
323 PF13407 Peripla_BP_4: Peripla 59.8 41 0.0009 32.1 7.9 148 58-232 52-206 (257)
324 PRK07589 ornithine cyclodeamin 59.6 80 0.0017 33.5 10.5 116 222-364 117-239 (346)
325 PRK11199 tyrA bifunctional cho 59.6 45 0.00097 35.4 8.8 33 236-280 98-131 (374)
326 PRK06928 pyrroline-5-carboxyla 59.6 36 0.00077 34.4 7.7 98 237-354 2-101 (277)
327 TIGR01316 gltA glutamate synth 59.6 13 0.00028 40.1 4.9 36 233-280 130-165 (449)
328 PRK12769 putative oxidoreducta 59.5 11 0.00025 42.6 4.6 34 235-280 326-359 (654)
329 PRK06753 hypothetical protein; 59.3 11 0.00025 38.6 4.2 20 238-257 2-21 (373)
330 COG0644 FixC Dehydrogenases (f 59.1 12 0.00026 39.5 4.3 35 237-283 4-38 (396)
331 KOG0743 AAA+-type ATPase [Post 59.1 18 0.00039 39.9 5.7 98 114-244 247-345 (457)
332 PRK12810 gltD glutamate syntha 59.0 12 0.00026 40.5 4.5 34 235-280 142-175 (471)
333 PRK07819 3-hydroxybutyryl-CoA 58.9 12 0.00026 38.1 4.2 32 237-280 6-37 (286)
334 cd01493 APPBP1_RUB Ubiquitin a 58.7 11 0.00025 40.9 4.2 38 232-280 16-53 (425)
335 PRK07045 putative monooxygenas 58.7 12 0.00026 38.8 4.3 21 237-257 6-26 (388)
336 PRK07233 hypothetical protein; 58.6 10 0.00023 39.3 3.8 31 238-280 1-31 (434)
337 PF13450 NAD_binding_8: NAD(P) 58.5 14 0.0003 29.6 3.7 30 241-282 1-30 (68)
338 PRK14106 murD UDP-N-acetylmura 58.2 14 0.0003 39.5 4.7 36 233-280 2-37 (450)
339 COG0654 UbiH 2-polyprenyl-6-me 58.1 13 0.00027 39.1 4.3 40 236-287 2-43 (387)
340 TIGR02032 GG-red-SF geranylger 58.1 12 0.00026 36.3 4.0 33 238-282 2-34 (295)
341 TIGR01214 rmlD dTDP-4-dehydror 57.6 41 0.00088 33.0 7.6 60 238-327 1-61 (287)
342 PRK07530 3-hydroxybutyryl-CoA 57.6 14 0.0003 37.3 4.3 32 237-280 5-36 (292)
343 PF03435 Saccharop_dh: Sacchar 57.6 4.8 0.0001 42.2 1.1 88 239-348 1-96 (386)
344 PLN02268 probable polyamine ox 57.5 5.6 0.00012 42.0 1.6 20 238-257 2-21 (435)
345 PRK05732 2-octaprenyl-6-methox 57.4 14 0.0003 38.1 4.4 36 236-280 3-38 (395)
346 KOG2018 Predicted dinucleotide 57.1 13 0.00028 39.5 4.0 40 232-282 70-109 (430)
347 cd01968 Nitrogenase_NifE_I Nit 56.9 14 0.00031 39.3 4.6 86 224-325 275-365 (410)
348 PLN00093 geranylgeranyl diphos 56.9 13 0.00027 40.5 4.2 21 237-257 40-60 (450)
349 PRK04965 NADH:flavorubredoxin 56.8 13 0.00027 38.8 4.0 36 237-282 3-38 (377)
350 PRK07608 ubiquinone biosynthes 56.7 12 0.00026 38.5 3.8 32 237-280 6-37 (388)
351 PRK08294 phenol 2-monooxygenas 55.8 12 0.00025 42.6 3.8 47 235-292 31-78 (634)
352 PF01946 Thi4: Thi4 family; PD 55.8 17 0.00037 36.6 4.5 35 235-281 16-50 (230)
353 TIGR00658 orni_carb_tr ornithi 55.7 1.1E+02 0.0023 31.9 10.6 135 168-324 85-224 (304)
354 COG0499 SAM1 S-adenosylhomocys 55.7 57 0.0012 35.4 8.5 131 204-368 170-315 (420)
355 PRK00141 murD UDP-N-acetylmura 55.7 15 0.00033 39.9 4.6 24 234-257 13-36 (473)
356 PRK05479 ketol-acid reductoiso 55.4 43 0.00093 35.4 7.6 25 233-257 14-38 (330)
357 PRK12266 glpD glycerol-3-phosp 55.4 13 0.00029 40.8 4.1 33 237-281 7-39 (508)
358 cd04951 GT1_WbdM_like This fam 55.4 1E+02 0.0023 30.3 10.1 38 306-348 254-291 (360)
359 TIGR01984 UbiH 2-polyprenyl-6- 55.3 12 0.00026 38.5 3.5 19 239-257 2-20 (382)
360 PLN02463 lycopene beta cyclase 55.2 14 0.0003 40.3 4.1 32 237-280 29-60 (447)
361 PRK08773 2-octaprenyl-3-methyl 55.2 13 0.00028 38.7 3.7 34 236-281 6-39 (392)
362 PRK00683 murD UDP-N-acetylmura 55.1 55 0.0012 34.9 8.6 108 236-378 3-110 (418)
363 TIGR01505 tartro_sem_red 2-hyd 55.0 42 0.00092 33.7 7.4 31 238-280 1-31 (291)
364 PLN02852 ferredoxin-NADP+ redu 54.9 11 0.00024 41.7 3.4 41 230-280 20-60 (491)
365 PRK08244 hypothetical protein; 54.8 14 0.00031 39.9 4.2 32 237-280 3-34 (493)
366 PRK08849 2-octaprenyl-3-methyl 54.7 16 0.00035 38.1 4.4 32 237-280 4-35 (384)
367 PTZ00318 NADH dehydrogenase-li 54.7 10 0.00022 40.5 3.0 36 233-280 7-42 (424)
368 PLN02676 polyamine oxidase 54.7 33 0.00071 37.7 7.0 37 235-282 25-61 (487)
369 PRK10157 putative oxidoreducta 54.2 14 0.00031 39.5 4.0 32 237-280 6-37 (428)
370 TIGR01373 soxB sarcosine oxida 54.2 19 0.00041 37.7 4.8 38 235-282 29-66 (407)
371 TIGR01988 Ubi-OHases Ubiquinon 54.1 14 0.0003 37.8 3.7 31 239-281 2-32 (385)
372 PLN02342 ornithine carbamoyltr 54.1 1.9E+02 0.004 31.0 12.2 126 174-324 136-267 (348)
373 PRK08020 ubiF 2-octaprenyl-3-m 54.1 14 0.0003 38.3 3.8 33 236-280 5-37 (391)
374 PRK08243 4-hydroxybenzoate 3-m 53.9 17 0.00036 38.1 4.4 34 236-281 2-35 (392)
375 PRK07251 pyridine nucleotide-d 53.8 16 0.00035 38.9 4.3 33 237-281 4-36 (438)
376 PRK07588 hypothetical protein; 53.7 16 0.00035 38.0 4.2 20 238-257 2-21 (391)
377 PF00743 FMO-like: Flavin-bind 53.7 15 0.00032 41.0 4.1 32 237-280 2-33 (531)
378 PRK05714 2-octaprenyl-3-methyl 53.6 13 0.00027 38.9 3.5 31 238-280 4-34 (405)
379 PRK08013 oxidoreductase; Provi 53.6 16 0.00034 38.4 4.1 33 236-280 3-35 (400)
380 PRK12562 ornithine carbamoyltr 53.5 1.2E+02 0.0025 32.2 10.5 138 167-324 90-233 (334)
381 PRK06416 dihydrolipoamide dehy 53.3 16 0.00034 39.2 4.2 33 237-281 5-37 (462)
382 TIGR00292 thiazole biosynthesi 53.2 17 0.00037 36.6 4.1 37 235-283 20-56 (254)
383 TIGR00670 asp_carb_tr aspartat 53.2 2.9E+02 0.0062 28.8 16.8 136 167-326 85-226 (301)
384 PRK02102 ornithine carbamoyltr 53.2 1.3E+02 0.0029 31.8 10.8 136 168-324 92-232 (331)
385 PRK11749 dihydropyrimidine deh 53.2 18 0.00038 39.0 4.5 34 235-280 139-172 (457)
386 PRK12778 putative bifunctional 53.0 18 0.00039 41.7 4.8 35 234-280 429-463 (752)
387 TIGR00031 UDP-GALP_mutase UDP- 52.9 17 0.00036 38.9 4.3 31 238-280 3-33 (377)
388 PRK06185 hypothetical protein; 52.9 16 0.00035 38.0 4.1 34 236-281 6-39 (407)
389 PRK09853 putative selenate red 52.7 16 0.00036 44.0 4.5 35 234-280 537-571 (1019)
390 PRK11259 solA N-methyltryptoph 52.5 17 0.00038 37.1 4.2 34 236-281 3-36 (376)
391 PRK14852 hypothetical protein; 51.9 14 0.00031 44.2 3.9 38 232-280 328-365 (989)
392 cd03813 GT1_like_3 This family 51.7 71 0.0015 34.5 8.9 37 307-348 363-399 (475)
393 COG1063 Tdh Threonine dehydrog 51.6 27 0.00058 36.5 5.5 98 210-325 143-247 (350)
394 PRK07538 hypothetical protein; 51.6 17 0.00038 38.2 4.1 20 238-257 2-21 (413)
395 PRK12831 putative oxidoreducta 51.4 19 0.00041 39.2 4.5 34 235-280 139-172 (464)
396 TIGR03026 NDP-sugDHase nucleot 51.4 50 0.0011 35.2 7.6 31 238-280 2-32 (411)
397 PRK12814 putative NADPH-depend 51.3 19 0.0004 41.1 4.5 34 235-280 192-225 (652)
398 PRK05868 hypothetical protein; 51.2 19 0.00041 37.6 4.3 21 237-257 2-22 (372)
399 PRK12570 N-acetylmuramic acid- 51.1 61 0.0013 33.6 7.9 37 316-354 127-165 (296)
400 PRK11101 glpA sn-glycerol-3-ph 50.8 18 0.0004 40.1 4.3 33 236-280 6-38 (546)
401 TIGR01377 soxA_mon sarcosine o 50.8 19 0.00041 36.9 4.2 33 238-282 2-34 (380)
402 PRK06834 hypothetical protein; 50.8 20 0.00043 39.3 4.5 35 235-281 2-36 (488)
403 PRK08850 2-octaprenyl-6-methox 50.7 19 0.00041 37.8 4.2 33 236-280 4-36 (405)
404 TIGR03088 stp2 sugar transfera 50.7 1E+02 0.0023 31.2 9.5 37 307-348 265-301 (374)
405 PRK08192 aspartate carbamoyltr 50.5 3.1E+02 0.0068 29.1 13.2 142 167-330 90-240 (338)
406 COG1748 LYS9 Saccharopine dehy 50.5 46 0.001 36.0 7.1 119 237-377 2-124 (389)
407 COG3380 Predicted NAD/FAD-depe 50.4 18 0.00039 37.9 3.8 32 238-281 3-34 (331)
408 TIGR01181 dTDP_gluc_dehyt dTDP 50.4 67 0.0014 31.5 7.8 78 238-327 1-84 (317)
409 PRK04346 tryptophan synthase s 50.3 3.7E+02 0.0079 29.2 16.2 93 132-257 25-128 (397)
410 TIGR03315 Se_ygfK putative sel 50.2 18 0.00039 43.6 4.3 34 235-280 536-569 (1012)
411 PRK12770 putative glutamate sy 50.1 25 0.00054 36.4 4.9 34 235-280 17-50 (352)
412 PF06690 DUF1188: Protein of u 50.1 30 0.00065 35.3 5.2 145 231-430 39-188 (252)
413 PRK04690 murD UDP-N-acetylmura 50.1 20 0.00044 39.0 4.4 24 234-257 6-29 (468)
414 PRK14806 bifunctional cyclohex 50.0 40 0.00087 38.6 7.0 83 237-341 4-86 (735)
415 PRK11559 garR tartronate semia 49.8 63 0.0014 32.5 7.7 32 237-280 3-34 (296)
416 PRK01747 mnmC bifunctional tRN 49.7 20 0.00043 40.6 4.5 33 237-281 261-293 (662)
417 PRK07494 2-octaprenyl-6-methox 49.6 18 0.00039 37.4 3.8 34 236-281 7-40 (388)
418 PRK10892 D-arabinose 5-phospha 49.6 96 0.0021 31.8 9.0 83 237-354 48-132 (326)
419 COG1252 Ndh NADH dehydrogenase 49.5 17 0.00037 39.5 3.6 35 236-280 3-37 (405)
420 TIGR02918 accessory Sec system 49.5 98 0.0021 34.3 9.6 36 308-348 386-421 (500)
421 PRK08132 FAD-dependent oxidore 49.5 19 0.00041 39.6 4.1 22 236-257 23-44 (547)
422 PRK07333 2-octaprenyl-6-methox 49.4 16 0.00035 37.8 3.4 20 238-257 3-22 (403)
423 TIGR03736 PRTRC_ThiF PRTRC sys 49.2 26 0.00057 35.5 4.7 45 235-280 10-54 (244)
424 PRK12829 short chain dehydroge 49.2 53 0.0011 31.5 6.7 37 233-280 8-44 (264)
425 PRK04284 ornithine carbamoyltr 48.9 1.3E+02 0.0027 31.9 9.9 132 174-324 96-232 (332)
426 TIGR01789 lycopene_cycl lycope 48.9 25 0.00055 37.0 4.8 35 239-283 2-36 (370)
427 PRK04663 murD UDP-N-acetylmura 48.9 65 0.0014 34.6 8.0 109 237-378 8-116 (438)
428 TIGR03143 AhpF_homolog putativ 48.6 20 0.00043 39.9 4.2 32 238-281 6-37 (555)
429 PF13241 NAD_binding_7: Putati 48.6 14 0.0003 31.8 2.3 37 233-281 4-40 (103)
430 PRK08010 pyridine nucleotide-d 48.5 20 0.00043 38.2 4.0 32 237-280 4-35 (441)
431 cd01715 ETF_alpha The electron 48.4 2.3E+02 0.0049 26.3 10.7 82 236-347 30-111 (168)
432 TIGR02360 pbenz_hydroxyl 4-hyd 48.4 23 0.00049 37.3 4.4 33 237-281 3-35 (390)
433 TIGR01408 Ube1 ubiquitin-activ 48.4 15 0.00033 44.2 3.4 39 232-281 20-58 (1008)
434 PF13738 Pyr_redox_3: Pyridine 48.4 19 0.00041 33.4 3.4 36 233-280 164-199 (203)
435 PRK11730 fadB multifunctional 48.4 20 0.00043 41.5 4.2 107 310-425 413-527 (715)
436 PRK13369 glycerol-3-phosphate 48.2 20 0.00044 39.2 4.1 32 237-280 7-38 (502)
437 PRK06912 acoL dihydrolipoamide 48.2 21 0.00045 38.4 4.1 31 238-280 2-32 (458)
438 PRK12491 pyrroline-5-carboxyla 48.1 39 0.00085 34.3 5.9 35 237-279 3-37 (272)
439 TIGR02053 MerA mercuric reduct 48.0 21 0.00046 38.3 4.2 30 239-280 3-32 (463)
440 TIGR01317 GOGAT_sm_gam glutama 48.0 23 0.00051 38.7 4.5 34 235-280 142-175 (485)
441 COG0794 GutQ Predicted sugar p 47.8 92 0.002 30.9 8.1 85 236-355 39-125 (202)
442 PRK11728 hydroxyglutarate oxid 47.6 23 0.00051 37.0 4.3 34 237-280 3-36 (393)
443 PRK09186 flagellin modificatio 47.6 36 0.00079 32.5 5.3 35 234-280 2-37 (256)
444 PRK06126 hypothetical protein; 47.6 24 0.00051 38.8 4.5 35 234-280 5-39 (545)
445 PRK12416 protoporphyrinogen ox 47.5 12 0.00027 39.8 2.3 47 237-283 2-55 (463)
446 PRK12775 putative trifunctiona 47.5 24 0.00052 42.5 4.8 34 235-280 429-462 (1006)
447 PRK14694 putative mercuric red 47.4 24 0.00053 38.0 4.5 34 235-280 5-38 (468)
448 PRK11445 putative oxidoreducta 47.3 17 0.00036 37.6 3.1 30 238-280 3-32 (351)
449 TIGR00274 N-acetylmuramic acid 47.3 35 0.00075 35.3 5.4 37 316-354 126-164 (291)
450 PRK11154 fadJ multifunctional 47.2 2.4E+02 0.0052 32.7 12.7 106 310-424 410-523 (708)
451 PF04320 DUF469: Protein with 47.2 16 0.00034 32.5 2.5 32 158-189 27-61 (101)
452 TIGR03219 salicylate_mono sali 47.1 23 0.0005 37.2 4.2 21 238-258 2-22 (414)
453 PRK07190 hypothetical protein; 47.1 24 0.00053 38.6 4.5 34 236-281 5-38 (487)
454 PLN02695 GDP-D-mannose-3',5'-e 47.1 75 0.0016 33.2 8.0 97 235-351 20-137 (370)
455 PRK05976 dihydrolipoamide dehy 47.0 22 0.00048 38.3 4.1 33 236-280 4-36 (472)
456 PLN02568 polyamine oxidase 47.0 13 0.00028 41.6 2.3 24 235-258 4-27 (539)
457 PRK06183 mhpA 3-(3-hydroxyphen 46.9 22 0.00049 39.0 4.2 23 235-257 9-31 (538)
458 cd04962 GT1_like_5 This family 46.9 1.6E+02 0.0035 29.4 10.0 37 307-348 263-299 (371)
459 PF01380 SIS: SIS domain SIS d 46.8 1.2E+02 0.0026 26.0 8.0 85 236-354 5-91 (131)
460 PRK00711 D-amino acid dehydrog 46.8 24 0.00052 36.8 4.2 31 238-280 2-32 (416)
461 cd00377 ICL_PEPM Members of th 46.6 3.1E+02 0.0068 27.4 16.8 41 331-375 184-224 (243)
462 PRK09897 hypothetical protein; 46.5 24 0.00053 39.5 4.4 33 238-280 3-35 (534)
463 COG3288 PntA NAD/NADP transhyd 46.4 37 0.00079 36.1 5.3 50 307-361 237-292 (356)
464 PRK06617 2-octaprenyl-6-methox 46.3 22 0.00047 37.0 3.8 31 238-280 3-33 (374)
465 TIGR03364 HpnW_proposed FAD de 46.0 23 0.00051 36.2 4.0 31 238-280 2-32 (365)
466 PRK06138 short chain dehydroge 46.0 66 0.0014 30.6 6.8 36 233-280 2-38 (252)
467 PF02558 ApbA: Ketopantoate re 45.9 29 0.00063 31.0 4.1 98 239-353 1-103 (151)
468 TIGR01350 lipoamide_DH dihydro 45.8 24 0.00053 37.6 4.2 31 238-280 3-33 (461)
469 PRK05993 short chain dehydroge 45.8 42 0.00091 33.1 5.6 32 237-280 5-37 (277)
470 PRK10262 thioredoxin reductase 45.7 19 0.0004 36.5 3.1 23 235-257 5-27 (321)
471 PRK10015 oxidoreductase; Provi 45.6 23 0.0005 38.0 4.0 33 237-281 6-38 (429)
472 PLN02927 antheraxanthin epoxid 45.5 19 0.00041 41.5 3.4 35 234-280 79-113 (668)
473 PTZ00367 squalene epoxidase; P 45.5 31 0.00068 38.9 5.1 41 228-280 22-65 (567)
474 PRK07424 bifunctional sterol d 45.4 33 0.00072 37.1 5.1 54 200-280 157-211 (406)
475 PRK08268 3-hydroxy-acyl-CoA de 45.4 26 0.00055 38.9 4.3 35 391-425 188-222 (507)
476 PRK12809 putative oxidoreducta 45.4 29 0.00063 39.4 4.9 35 235-281 309-343 (639)
477 cd03811 GT1_WabH_like This fam 45.2 2E+02 0.0043 27.3 10.0 38 306-348 255-292 (353)
478 PRK06292 dihydrolipoamide dehy 45.0 27 0.00059 37.3 4.4 32 237-280 4-35 (460)
479 PTZ00188 adrenodoxin reductase 45.0 36 0.00078 38.1 5.4 35 235-280 38-72 (506)
480 PF12831 FAD_oxidored: FAD dep 44.6 27 0.00059 37.4 4.3 33 239-283 2-34 (428)
481 TIGR01318 gltD_gamma_fam gluta 44.6 32 0.00069 37.5 4.9 34 235-280 140-173 (467)
482 PRK09987 dTDP-4-dehydrorhamnos 44.6 83 0.0018 31.7 7.6 86 238-351 2-104 (299)
483 PRK12828 short chain dehydroge 44.4 37 0.00079 31.8 4.7 36 233-280 4-40 (239)
484 COG0665 DadA Glycine/D-amino a 44.1 32 0.0007 35.2 4.6 37 235-283 3-39 (387)
485 PRK00048 dihydrodipicolinate r 44.1 1.2E+02 0.0025 30.5 8.5 88 237-349 2-90 (257)
486 PRK06392 homoserine dehydrogen 44.1 90 0.002 32.8 7.9 159 238-413 2-181 (326)
487 PRK13403 ketol-acid reductoiso 44.1 50 0.0011 35.2 6.0 64 232-321 12-76 (335)
488 PRK05808 3-hydroxybutyryl-CoA 43.9 30 0.00064 34.7 4.2 32 237-280 4-35 (282)
489 cd03819 GT1_WavL_like This fam 43.9 1.7E+02 0.0038 28.8 9.6 38 307-348 256-293 (355)
490 PLN02172 flavin-containing mon 43.9 28 0.0006 38.1 4.3 37 233-281 201-237 (461)
491 PF03486 HI0933_like: HI0933-l 43.8 24 0.00053 38.1 3.8 31 238-280 2-32 (409)
492 cd08231 MDR_TM0436_like Hypoth 43.5 55 0.0012 33.4 6.2 49 220-279 162-210 (361)
493 PF01408 GFO_IDH_MocA: Oxidore 43.3 38 0.00083 28.8 4.3 90 238-348 2-91 (120)
494 cd05014 SIS_Kpsf KpsF-like pro 43.3 2.1E+02 0.0046 24.6 9.1 83 237-354 1-85 (128)
495 cd04949 GT1_gtfA_like This fam 43.2 1.3E+02 0.0029 30.3 8.9 86 223-348 222-307 (372)
496 PRK06841 short chain dehydroge 43.2 40 0.00087 32.3 4.9 36 233-280 12-48 (255)
497 PLN02240 UDP-glucose 4-epimera 43.1 48 0.001 33.6 5.6 107 233-351 2-132 (352)
498 PRK13394 3-hydroxybutyrate deh 43.1 72 0.0016 30.5 6.6 35 234-280 5-40 (262)
499 PRK04308 murD UDP-N-acetylmura 43.0 32 0.0007 36.8 4.6 24 234-257 3-26 (445)
500 PRK06567 putative bifunctional 42.8 31 0.00067 41.7 4.7 37 232-280 379-415 (1028)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2e-198 Score=1540.16 Aligned_cols=493 Identities=67% Similarity=1.100 Sum_probs=488.8
Q ss_pred cccccCCCchhHHHHHHHHHhhhHHHHHHHhhcCcccccccccccchHHHHHHHhhhhcCCCcceecccccchHHHHhhc
Q 010990 2 NSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKN 81 (496)
Q Consensus 2 ~~~~~~~~~l~ky~~L~~L~~~N~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~n 81 (496)
.+|+++++||+||+||++||+|||+|||++|++|+||+||||||||||+|||+||++||+|+|||||++|+|||.++|+|
T Consensus 76 ~~l~~~~~~l~ky~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~n 155 (582)
T KOG1257|consen 76 NNLRSLTSPLAKYIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKN 155 (582)
T ss_pred HHHHhccchHHHHHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEecCcccccCCCCCCccccchhhhHHHHhhhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChh
Q 010990 82 WPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQ 161 (496)
Q Consensus 82 ~~~~~v~viVVTDG~rILGLGDlG~~gm~I~~GKl~Ly~~~gGi~P~~~lPi~LDvgTnn~~Ll~DplYlG~r~~R~~g~ 161 (496)
||.++|++||||||+|||||||||++|||||+||++|||+||||+|++|||||||||||||+||+||+|+|+|++|++|+
T Consensus 156 Wp~~~V~~IvVTDGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~ 235 (582)
T KOG1257|consen 156 WPERNVKAIVVTDGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGK 235 (582)
T ss_pred CCccceeEEEEeCCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEE
Q 010990 162 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF 241 (496)
Q Consensus 162 ~y~~~vdefv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~ 241 (496)
+||+|+||||+|+.++|||++|||||||+++|||++|+|||.++|||||||||||+|+|||||+|+|++|++|+|++|||
T Consensus 236 eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf 315 (582)
T KOG1257|consen 236 EYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILF 315 (582)
T ss_pred HHHHHHHHHHHHHHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEE
Q 010990 242 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILI 321 (496)
Q Consensus 242 ~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLI 321 (496)
+|||+||+|||+||+.+|+++ |+|+|||+|+|||+|++|||+++|+.+++++|++||++++++++|+|+|+.+||||||
T Consensus 316 ~GAG~A~~GIA~l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLi 394 (582)
T KOG1257|consen 316 LGAGEAALGIANLIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLI 394 (582)
T ss_pred ecCchHHhhHHHHHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEE
Confidence 999999999999999999985 9999999999999999999999997679999999999999999999999999999999
Q ss_pred EccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeCccCccccccc
Q 010990 322 GSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIF 401 (496)
Q Consensus 322 G~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iF 401 (496)
|+|++||+|||||||+|+++|||||||||||||+++||||||||+||+||||||||||||||+++||+|+|||+||+|+|
T Consensus 395 G~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiF 474 (582)
T KOG1257|consen 395 GASGVGGAFTEEVLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIF 474 (582)
T ss_pred ecccCCccCCHHHHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhCCcccCHHHHHHHHHHHHhccccccCCCCcccCCCCCccchHHHHHHHHHHHHHHcCCCCCCCCchhHHH
Q 010990 402 PGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVK 481 (496)
Q Consensus 402 PGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~e~l~~g~l~P~~~~ireVS~~VA~aV~~~A~~~GlA~~~~~p~d~~~ 481 (496)
||||||+++|++++|||+||++||++||+.++++++++|.||||+++||+||.+||++|+++|+++|+|+..|+|+|+++
T Consensus 475 PGi~Lg~vlsg~~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~ 554 (582)
T KOG1257|consen 475 PGIGLGVVLSGARRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEK 554 (582)
T ss_pred chHHHHHHHcCCccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcccCCCCC
Q 010990 482 CAESCMYTPVYRNY 495 (496)
Q Consensus 482 ~i~~~mw~P~Y~~~ 495 (496)
|++++||+|+|+++
T Consensus 555 ~~~~~~y~~~Y~~~ 568 (582)
T KOG1257|consen 555 FIEESMYNPEYRNS 568 (582)
T ss_pred HHHhccCCcccccc
Confidence 99999999999985
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-192 Score=1522.44 Aligned_cols=492 Identities=49% Similarity=0.869 Sum_probs=482.4
Q ss_pred CcccccCCCchhHHHHHHHHHhhhHHHHHHHhhcCcccccccccccchHHHHHHHhhhhcCCCcceecccccchHHHHhh
Q 010990 1 MNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLK 80 (496)
Q Consensus 1 ~~~~~~~~~~l~ky~~L~~L~~~N~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~ 80 (496)
|.||+++++||+||+||++||+|||+||||+|.+|+|||||||||||||+|||+||++||+|||||||++|+|+|+++|+
T Consensus 61 ~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~ 140 (563)
T PRK13529 61 YRQYQSKPTDLEKHIYLRNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQ 140 (563)
T ss_pred HHHHhcCCChHHHHHHHHHHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEecCcccccCCCCCCccccchhhhHHHHhhhcCCCCCceeeEEeecCCCchhcccCcccccccccCCCh
Q 010990 81 NWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATG 160 (496)
Q Consensus 81 n~~~~~v~viVVTDG~rILGLGDlG~~gm~I~~GKl~Ly~~~gGi~P~~~lPi~LDvgTnn~~Ll~DplYlG~r~~R~~g 160 (496)
|||.++|++||||||||||||||||++|||||+||++|||+||||||++|||||||+|||||+||+||+|+||||||++|
T Consensus 141 nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g 220 (563)
T PRK13529 141 NAPNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRG 220 (563)
T ss_pred cCCcccceEEEEeCCceeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEE
Q 010990 161 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFL 240 (496)
Q Consensus 161 ~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv 240 (496)
++||+|+||||++|+.+| |+++||||||+++|||+||+|||++||||||||||||+|+|||||||+|++|++|+|||||
T Consensus 221 ~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv 299 (563)
T PRK13529 221 EEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIV 299 (563)
T ss_pred HHHHHHHHHHHHHHHHhC-CCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEE
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCC---------CCHHHH
Q 010990 241 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDA 311 (496)
Q Consensus 241 ~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~---------~~L~e~ 311 (496)
|+|||+||+|||++|+++|++ +|+|+|||++|||+|||+|||+++|.+ |+++|++||++.++. .+|+|+
T Consensus 300 ~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~ 377 (563)
T PRK13529 300 FLGAGSAGCGIADQIVAAMVR-EGLSEEEARKRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEV 377 (563)
T ss_pred EECCCHHHHHHHHHHHHHHHH-cCCChhHhcCeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHH
Confidence 999999999999999999987 599999999999999999999999964 999999999976542 699999
Q ss_pred hcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeC
Q 010990 312 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFV 391 (496)
Q Consensus 312 v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~ 391 (496)
|+++|||||||+|+++|+||||||++|+++|+|||||||||||+++||+|||||+||+|||||||||||+||+|+||+++
T Consensus 378 v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~ 457 (563)
T PRK13529 378 VRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYP 457 (563)
T ss_pred HhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccccccCCCCcccCCCCCccchHHHHHHHHHHHHHHcCCCC
Q 010990 392 PGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVAT 471 (496)
Q Consensus 392 p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~e~l~~g~l~P~~~~ireVS~~VA~aV~~~A~~~GlA~ 471 (496)
||||||+|||||||||+++++|++|||+||++||++||+++++++++++.|||++++||+||.+||.||+++|+++|+|+
T Consensus 458 p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~ 537 (563)
T PRK13529 458 IGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLAR 537 (563)
T ss_pred cCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCchhHHHHHHhCCcccCCCCCC
Q 010990 472 RLPRPQNLVKCAESCMYTPVYRNYR 496 (496)
Q Consensus 472 ~~~~p~d~~~~i~~~mw~P~Y~~~~ 496 (496)
. +.|+|+.+||+++||+|+|+|++
T Consensus 538 ~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 538 E-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred C-CCHHHHHHHHHhcCcCCCCcccc
Confidence 5 67899999999999999999874
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.2e-191 Score=1524.37 Aligned_cols=496 Identities=75% Similarity=1.202 Sum_probs=487.9
Q ss_pred CcccccCCCchhHHHHHHHHHhhhHHHHHHHhhcCcccccccccccchHHHHHHHhhhhcCCCcceecccccchHHHHhh
Q 010990 1 MNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLK 80 (496)
Q Consensus 1 ~~~~~~~~~~l~ky~~L~~L~~~N~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~ 80 (496)
|.||++++++|+||+||++||+|||+|||+++.+|++||||||||||||+||++||++||+|||||||++|+|+|+++++
T Consensus 86 ~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~ 165 (581)
T PLN03129 86 MENLRALESPLAKYRALMDLQERNERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLK 165 (581)
T ss_pred HHHHhccCCcHHHHHHHHHHHhhCcccchhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEecCcccccCCCCCCccccchhhhHHHHhhhcCCCCCceeeEEeecCCCchhcccCcccccccccCCCh
Q 010990 81 NWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATG 160 (496)
Q Consensus 81 n~~~~~v~viVVTDG~rILGLGDlG~~gm~I~~GKl~Ly~~~gGi~P~~~lPi~LDvgTnn~~Ll~DplYlG~r~~R~~g 160 (496)
|||.++|++||||||||||||||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|
T Consensus 166 n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g 245 (581)
T PLN03129 166 NWPERDVQVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTG 245 (581)
T ss_pred cCCCcCceEEEEecCcceeeccccCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEE
Q 010990 161 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFL 240 (496)
Q Consensus 161 ~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv 240 (496)
++||+|+||||++|+.+|||+++||||||+++|||+||+|||+++|||||||||||+|+|||+|||+|++|++|+|||||
T Consensus 246 ~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv 325 (581)
T PLN03129 246 EEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRIL 325 (581)
T ss_pred hhHHHhHHHHHHHHHHHhCCccEEehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEE
Q 010990 241 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 320 (496)
Q Consensus 241 ~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvL 320 (496)
|+|||+||+|||+||+++|++++|+|+|||++|||+||++|||+++|.+.|+++|++||++.++.++|+|+|+++|||||
T Consensus 326 ~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvL 405 (581)
T PLN03129 326 FAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVL 405 (581)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEE
Confidence 99999999999999999998766999999999999999999999999656999999999987778999999999999999
Q ss_pred EEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeCccCcccccc
Q 010990 321 IGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYI 400 (496)
Q Consensus 321 IG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~i 400 (496)
||+|+++|+||||||++|+++|+|||||||||||++|||+|||||+||+|||||||||||+||+|+||+++||||||+|+
T Consensus 406 IG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~i 485 (581)
T PLN03129 406 IGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYI 485 (581)
T ss_pred EEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhCCcccCHHHHHHHHHHHHhccccccCCCCcccCCCCCccchHHHHHHHHHHHHHHcCCCCCCCCchhHH
Q 010990 401 FPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLV 480 (496)
Q Consensus 401 FPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~e~l~~g~l~P~~~~ireVS~~VA~aV~~~A~~~GlA~~~~~p~d~~ 480 (496)
|||||||+++++|++|||+||++||++||++++++++..+.|||++++||+||.+||.||+++|+++|+|+..++|+|+.
T Consensus 486 FPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~ 565 (581)
T PLN03129 486 FPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLV 565 (581)
T ss_pred ccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCcccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777889999
Q ss_pred HHHHhCCcccCCCCCC
Q 010990 481 KCAESCMYTPVYRNYR 496 (496)
Q Consensus 481 ~~i~~~mw~P~Y~~~~ 496 (496)
+|++++||+|+|+|++
T Consensus 566 ~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 566 EYAESCMYSPVYRPYR 581 (581)
T ss_pred HHHHHcCcCCCCCCCC
Confidence 9999999999999974
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2e-189 Score=1501.88 Aligned_cols=489 Identities=50% Similarity=0.872 Sum_probs=477.2
Q ss_pred CcccccCCCchhHHHHHHHHHhhhHHHHHHHhhcCcccccccccccchHHHHHHHhhhhcCCCcceecccccchHHHHhh
Q 010990 1 MNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLK 80 (496)
Q Consensus 1 ~~~~~~~~~~l~ky~~L~~L~~~N~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~ 80 (496)
|.||+++++||+||+||++||+|||+|||+++.+|+|||||||||||||+||++||++||+|+|||+|++|+|+|+++|+
T Consensus 63 ~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~ 142 (559)
T PTZ00317 63 WTQFNRIETPINKYQFLRNIHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILK 142 (559)
T ss_pred HHHHhhCCChHHHHHHHHHHhhcCchHHHHHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEecCcccccCCCCCCccccchhhhHHHHhhhcCCCCCceeeEEeecCCCchhcccCcccccccccCCCh
Q 010990 81 NWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATG 160 (496)
Q Consensus 81 n~~~~~v~viVVTDG~rILGLGDlG~~gm~I~~GKl~Ly~~~gGi~P~~~lPi~LDvgTnn~~Ll~DplYlG~r~~R~~g 160 (496)
|||.++|++||||||||||||||||++|||||+||++|||+||||||++|||||||||||||+||+||+|+||||+|++|
T Consensus 143 Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g 222 (559)
T PTZ00317 143 NWPYDNVDVIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDD 222 (559)
T ss_pred cCCccCceEEEEeccccccccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEE
Q 010990 161 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFL 240 (496)
Q Consensus 161 ~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv 240 (496)
++||+|+||||++++.+| |+++||||||+++|||+||+|||+++|||||||||||+|+|||||||+|++|++|+|||||
T Consensus 223 ~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv 301 (559)
T PTZ00317 223 DEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIV 301 (559)
T ss_pred hhHHHHHHHHHHHHHHhC-CCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEE
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc--CC---CCCHHHHhccc
Q 010990 241 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVI 315 (496)
Q Consensus 241 ~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~--~~---~~~L~e~v~~v 315 (496)
|+|||+||+|||+||+++|++ +|+|+||||+||||+||+|||+++|.+.|+++|++||++. ++ ..+|+|+|+.+
T Consensus 302 ~~GAGsAgiGia~ll~~~m~~-~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~ 380 (559)
T PTZ00317 302 FFGAGSAAIGVANNIADLAAE-YGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFV 380 (559)
T ss_pred EECCCHHHHHHHHHHHHHHHH-cCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhcc
Confidence 999999999999999999987 6999999999999999999999999766999999999974 33 57999999999
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeCccCc
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQA 395 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~ 395 (496)
|||||||+|+++|+||||||++|+++|+|||||||||||++|||+|||||+||+|||||||||||+||+|+||+++||||
T Consensus 381 KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~ 460 (559)
T PTZ00317 381 KPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQG 460 (559)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccccccCCCCcccCCCCCccchHHHHHHHHHHHHHHcCCCCC--C
Q 010990 396 NNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR--L 473 (496)
Q Consensus 396 NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~e~l~~g~l~P~~~~ireVS~~VA~aV~~~A~~~GlA~~--~ 473 (496)
||+|||||||||+++++|++|||+||++||++||+++++++++.++|||++++||+||.+||.||+++|+++|+|+. .
T Consensus 461 NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~ 540 (559)
T PTZ00317 461 NNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDL 540 (559)
T ss_pred cceeeccchhhhhHhhcccCCCHHHHHHHHHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985 3
Q ss_pred CC-chhHHHHHHhCCcccC
Q 010990 474 PR-PQNLVKCAESCMYTPV 491 (496)
Q Consensus 474 ~~-p~d~~~~i~~~mw~P~ 491 (496)
++ ++|+.+||+++||+|.
T Consensus 541 ~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 541 PDNRDELLALVKDRMWVPK 559 (559)
T ss_pred CCCHHHHHHHHHhcCcCCC
Confidence 43 4799999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.4e-119 Score=933.06 Aligned_cols=412 Identities=38% Similarity=0.565 Sum_probs=373.8
Q ss_pred ccccCCC-chhHHHHHHHHHhhhHHHHHHHhhcCcccccccccccchHHHHHHHhhhhcCCCcceecccccchHHHHhhc
Q 010990 3 SIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKN 81 (496)
Q Consensus 3 ~~~~~~~-~l~ky~~L~~L~~~N~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~n 81 (496)
++..+.+ +|++|.|| ++|+.+||.++..|..|+|||+||||||++|++||+.+++++ .
T Consensus 13 ~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~-----------------~ 71 (432)
T COG0281 13 QYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY-----------------S 71 (432)
T ss_pred HHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----------------h
Confidence 3444555 99999999 899999999999999999999999999999999997777775 4
Q ss_pred CCCCCceEEEEecCcccccCCCCCC-ccccchhhhHHHHhhhcCCCCCceeeEEeecCCCchhcccCcccccccccCCCh
Q 010990 82 WPERSIQVIVVTDGERILGLGDLGC-QGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATG 160 (496)
Q Consensus 82 ~~~~~v~viVVTDG~rILGLGDlG~-~gm~I~~GKl~Ly~~~gGi~P~~~lPi~LDvgTnn~~Ll~DplYlG~r~~R~~g 160 (496)
++.+++++||||||||||||||+|+ .||||||||++|||+||||| +||||||+||+|+
T Consensus 72 yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e------------------ 130 (432)
T COG0281 72 YTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE------------------ 130 (432)
T ss_pred cCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH------------------
Confidence 6677789999999999999999995 58999999999999999999 9999999999876
Q ss_pred hhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHH--HcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccce
Q 010990 161 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAK--YGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHR 238 (496)
Q Consensus 161 ~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~af~iL~~--yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~r 238 (496)
+++||++++++||. |++||++.|+||.++++ ||.+||||||||||||+|+|||||||||++|++|+|+|
T Consensus 131 ------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~k 201 (432)
T COG0281 131 ------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQK 201 (432)
T ss_pred ------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceE
Confidence 79999999999988 88899999999888665 56799999999999999999999999999999999999
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcC-CCchhchhhcc-ccCCCCCHHHHhcccC
Q 010990 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHEPVNNLLDAVKVIK 316 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~-~l~~~k~~~a~-~~~~~~~L~e~v~~vk 316 (496)
|||+|||+||+|||++|+.+ |++ ++|||+|||+|+|+++|.+ .++++|..+|. +.....+ .+++. +
T Consensus 202 iv~~GAGAAgiaia~~l~~~-----g~~----~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~--~ 269 (432)
T COG0281 202 IVINGAGAAGIAIADLLVAA-----GVK----EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALA--G 269 (432)
T ss_pred EEEeCCcHHHHHHHHHHHHh-----CCC----cccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-ccccc--C
Confidence 99999999999999999987 553 2899999999999999965 37888888885 4444442 44554 5
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeCccCcc
Q 010990 317 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQAN 396 (496)
Q Consensus 317 ptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~N 396 (496)
||||||+|++ |+||+|+|++|+ ++|||||||||| ||++||||.+|++|++|+|||| +++|||+|
T Consensus 270 adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGr----------sd~PnQvN 333 (432)
T COG0281 270 ADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGR----------SDYPNQVN 333 (432)
T ss_pred CCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCC----------CCCccccc
Confidence 9999999998 899999999998 559999999999 9999999999999999999996 67778999
Q ss_pred cccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccccccCCCCcccCCCCCccchHHHHHHHHHHHHHHcCCCCCCCCc
Q 010990 397 NAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRP 476 (496)
Q Consensus 397 N~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~e~l~~g~l~P~~~~ireVS~~VA~aV~~~A~~~GlA~~~~~p 476 (496)
|+|+|||||+|+|++||++|||+|+++||+|||++++++.+ ++.|+|++++.|.+|. ||.||+++|.++|+|+..+..
T Consensus 334 NvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~aA~~~GvA~~~~~~ 411 (432)
T COG0281 334 NVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKAAMEEGVARRPIDD 411 (432)
T ss_pred ceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHHHHHcCCccCCCCC
Confidence 99999999999999999999999999999999999987666 8999999999999998 999999999999999976554
Q ss_pred -hhHHHHHHhCCcccCCCCC
Q 010990 477 -QNLVKCAESCMYTPVYRNY 495 (496)
Q Consensus 477 -~d~~~~i~~~mw~P~Y~~~ 495 (496)
+++.++++..+|.|.|.++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~ 431 (432)
T COG0281 412 EEAYEQALEARLWKPEYRMK 431 (432)
T ss_pred HHHHHHHHHHHhcCcccccC
Confidence 4699999999999999876
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=2.3e-112 Score=940.26 Aligned_cols=368 Identities=32% Similarity=0.497 Sum_probs=336.1
Q ss_pred cccccccccchHHHHHHHhhhhcCCCcceecccccchHHHHhhcCCCCCceEEEEecCcccccCCCCCCcc-ccchhhhH
Q 010990 38 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGKL 116 (496)
Q Consensus 38 e~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~g-m~I~~GKl 116 (496)
+.|+++|||||+++|++ |+++|+++| .|+.+++.++|||||||||||||+|++| |||||||+
T Consensus 35 ~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK~ 97 (764)
T PRK12861 35 RDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGKA 97 (764)
T ss_pred HHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHHH
Confidence 44999999999999999 789999887 6777888899999999999999999997 99999999
Q ss_pred HHHhhhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccHHH
Q 010990 117 ALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 196 (496)
Q Consensus 117 ~Ly~~~gGi~P~~~lPi~LDvgTnn~~Ll~DplYlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~af~ 196 (496)
+|||+||||| ++|||+ || +|| ++|| |||++++++||+ ||||||++||||+
T Consensus 98 ~L~~~~agid---~~di~~----~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f~ 147 (764)
T PRK12861 98 VLFKKFAGID---VFDIEI----NE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECFT 147 (764)
T ss_pred HHHhhccCCC---cccccc----CC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHHH
Confidence 9999999999 555554 44 566 6888 999999999987 9999999999999
Q ss_pred HHHHHcC--CCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcE
Q 010990 197 LLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 274 (496)
Q Consensus 197 iL~~yr~--~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i 274 (496)
||+|||+ +||||||||||||+|+|||||||+|++|++|+|+||||+|||+||+|||++|+. .|+++| ||
T Consensus 148 il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~i 218 (764)
T PRK12861 148 VERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----NI 218 (764)
T ss_pred HHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----hE
Confidence 9999998 799999999999999999999999999999999999999999999999999976 499854 99
Q ss_pred EEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010990 275 CLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 275 ~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
|||||+|||+++|.+.|+++|++||++. +..+|+|+|++ +|||||+|+ +|+||+|+|++|+ +|||||||||||
T Consensus 219 ~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNPt 291 (764)
T PRK12861 219 WVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANPT 291 (764)
T ss_pred EEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCCC
Confidence 9999999999999656999999999986 45799999998 899999998 8999999999998 599999999999
Q ss_pred CCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhcccc
Q 010990 355 SQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTE 434 (496)
Q Consensus 355 ~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~ 434 (496)
|||+||||++ |+|++||||| |+++|||+||+|+|||||||++++||++|||+|+++||++||+++++
T Consensus 292 --pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~~ 358 (764)
T PRK12861 292 --PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAEE 358 (764)
T ss_pred --ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCCc
Confidence 8999999987 9999999997 79999999999999999999999999999999999999999999998
Q ss_pred cc--------------CCCCcccCCCCCccchHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHH
Q 010990 435 EN--------------FEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAE 484 (496)
Q Consensus 435 e~--------------l~~g~l~P~~~~ireVS~~VA~aV~~~A~~~GlA~~~~~p~d~~~~i~ 484 (496)
++ +....|+|+..+ ++||.+||.||+++|+++|+|+. +. +|+.+|++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~ 419 (764)
T PRK12861 359 EQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVE 419 (764)
T ss_pred ccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHH
Confidence 75 334455597666 79999999999999999999985 32 45666554
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=4.7e-111 Score=934.68 Aligned_cols=368 Identities=29% Similarity=0.460 Sum_probs=337.4
Q ss_pred cccccccccchHHHHHHHhhhhcCCCcceecccccchHHHHhhcCCCCCceEEEEecCcccccCCCCCCcc-ccchhhhH
Q 010990 38 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGKL 116 (496)
Q Consensus 38 e~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~g-m~I~~GKl 116 (496)
+.|+++|||||+++|++ |+++|+++| .|+.+++.+||||||||||||||+|++| |||||||+
T Consensus 39 ~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK~ 101 (763)
T PRK12862 39 RDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGKA 101 (763)
T ss_pred HHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHHH
Confidence 44999999999999999 678998888 6788899999999999999999999996 99999999
Q ss_pred HHHhhhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCC-eeeEeeeCCCccHH
Q 010990 117 ALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNAF 195 (496)
Q Consensus 117 ~Ly~~~gGi~P~~~lPi~LDvgTnn~~Ll~DplYlG~r~~R~~g~~y~~~vdefv~av~~~fGp~-~li~~EDf~~~~af 195 (496)
+|||+||||| ++|||+| |+ || ||||++++..| |+ +.||||||++||||
T Consensus 102 ~l~~~~~gi~---~~~i~~~----~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~f 150 (763)
T PRK12862 102 VLFKKFAGID---VFDIELD----ES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPECF 150 (763)
T ss_pred HHHHhhcCCC---ccccccC----CC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchHH
Confidence 9999999999 7766666 43 44 78888888888 77 78999999999999
Q ss_pred HHHHHHcCC--CceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 010990 196 ELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 273 (496)
Q Consensus 196 ~iL~~yr~~--~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~ 273 (496)
+||+|||++ ||||||||||||+|+|||||||+|++|++|+|+||||+|||+||+|||++|+. .|+++ +|
T Consensus 151 ~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~~ 221 (763)
T PRK12862 151 YIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----EN 221 (763)
T ss_pred HHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----cc
Confidence 999999986 99999999999999999999999999999999999999999999999999987 39874 79
Q ss_pred EEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCC
Q 010990 274 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 353 (496)
Q Consensus 274 i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNP 353 (496)
||||||+|||+++|.+.|+++|++||++. +..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 222 i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsNP 294 (763)
T PRK12862 222 IWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALANP 294 (763)
T ss_pred EEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCCC
Confidence 99999999999999656999999999986 45799999998 999999999 8999999999998 99999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccc
Q 010990 354 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 433 (496)
Q Consensus 354 t~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~ 433 (496)
| |||+||||++||+| |||||| |+++|||+||+|+|||||+|++++||++|||+|+++||++||++++
T Consensus 295 ~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~ 361 (763)
T PRK12862 295 T--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELAR 361 (763)
T ss_pred c--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhccc
Confidence 9 89999999999999 999999 7999999999999999999999999999999999999999999999
Q ss_pred ccc--------------CCCCcccCCCCCccchHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 010990 434 EEN--------------FEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 485 (496)
Q Consensus 434 ~e~--------------l~~g~l~P~~~~ireVS~~VA~aV~~~A~~~GlA~~~~~p~d~~~~i~~ 485 (496)
+++ +.+++|+|+..+ ++||..||.||+++|+++|+|+. + .+|+.+|+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 362 EEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred ccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 873 455669997777 89999999999999999999985 3 3466666554
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=7.2e-110 Score=921.03 Aligned_cols=372 Identities=31% Similarity=0.485 Sum_probs=340.0
Q ss_pred cccccccccchHHHHHHHhhhhcCCCcceecccccchHHHHhhcCCCCCceEEEEecCcccccCCCCCCc-cccchhhhH
Q 010990 38 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGKL 116 (496)
Q Consensus 38 e~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~-gm~I~~GKl 116 (496)
+.|+++|||||+++|++ |+++|+++| .++.+++.++|||||||||||||+|++ ||||||||+
T Consensus 31 ~dl~~~Ytpgv~~~c~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~a~~pv~egK~ 93 (752)
T PRK07232 31 RDLSLAYSPGVAAPCLE---IAKDPADAY--------------KYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKG 93 (752)
T ss_pred hhcceecCCchHHHHHH---HHhChhhcc--------------ccccCCcEEEEEccchhhccccccccccCccHHHHHH
Confidence 44999999999999996 789999999 455666789999999999999999999 799999999
Q ss_pred HHHhhhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCe-eeEeeeCCCccHH
Q 010990 117 ALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV-LIQFEDFANHNAF 195 (496)
Q Consensus 117 ~Ly~~~gGi~P~~~lPi~LDvgTnn~~Ll~DplYlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~-li~~EDf~~~~af 195 (496)
+|||+||||| ++|||+| |++ +||||++++..| |+. .||||||++||||
T Consensus 94 ~l~~~~~gid---~~~i~~~----~~d-----------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~f 142 (752)
T PRK07232 94 VLFKKFAGID---VFDIEVD----EED-----------------------PDKFIEAVAALE-PTFGGINLEDIKAPECF 142 (752)
T ss_pred HHHHhhcCCC---ccccccC----CCC-----------------------HHHHHHHHHHhC-CCccEEeeeecCCchHH
Confidence 9999999999 6666665 442 799999999999 664 9999999999999
Q ss_pred HHHHHHcCC--CceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 010990 196 ELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 273 (496)
Q Consensus 196 ~iL~~yr~~--~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~ 273 (496)
+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ ++|
T Consensus 143 ~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~~ 213 (752)
T PRK07232 143 YIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KEN 213 (752)
T ss_pred HHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----ccc
Confidence 999999985 89999999999999999999999999999999999999999999999999986 3887 689
Q ss_pred EEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCC
Q 010990 274 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 353 (496)
Q Consensus 274 i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNP 353 (496)
||||||+|||+++|.++|+++|++||++ .+..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 214 i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsNP 286 (752)
T PRK07232 214 IIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALANP 286 (752)
T ss_pred EEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCCC
Confidence 9999999999999965699999999998 445799999998 999999999 8999999999997 79999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccc
Q 010990 354 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 433 (496)
Q Consensus 354 t~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~ 433 (496)
| |||+||||++||+| +||||| |+++|||+||+|+|||||+|++++||++|||+|+++||++||++++
T Consensus 287 ~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~ 353 (752)
T PRK07232 287 D--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELAR 353 (752)
T ss_pred C--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhcc
Confidence 9 89999999999999 999999 7999999999999999999999999999999999999999999998
Q ss_pred cc--------------cCCCCcccCCCCCccchHHHHHHHHHHHHHHcCCCCCCC-CchhHHHHHHhCC
Q 010990 434 EE--------------NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLP-RPQNLVKCAESCM 487 (496)
Q Consensus 434 ~e--------------~l~~g~l~P~~~~ireVS~~VA~aV~~~A~~~GlA~~~~-~p~d~~~~i~~~m 487 (496)
++ ++.+.+|+|+.++ ++|+..||.||+++|+++|+|+.+. .++++.+.+++.|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~~~~~~~~~~~~~~~~~ 421 (752)
T PRK07232 354 EEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATRPIADMDAYREKLEAFV 421 (752)
T ss_pred cccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccCCCCCHHHHHHHHHHHH
Confidence 86 7889999999999 7899999999999999999998543 3344444444443
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=6.9e-100 Score=759.74 Aligned_cols=277 Identities=60% Similarity=0.974 Sum_probs=270.3
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 212 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 212 iQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
|||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999988 699999999999999999999999965 9
Q ss_pred chhchhhccccC--CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccC
Q 010990 292 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 369 (496)
Q Consensus 292 ~~~k~~~a~~~~--~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~ 369 (496)
+++|++||++.+ +.++|+|+|+.+|||||||+|+++|+||+|+|++|+++|+|||||||||||+++||+|||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccccccCCCCcccCCCCCc
Q 010990 370 GRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 449 (496)
Q Consensus 370 G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~e~l~~g~l~P~~~~i 449 (496)
|||||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++.+++|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccc
Q 010990 450 RKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 490 (496)
Q Consensus 450 reVS~~VA~aV~~~A~~~GlA~~~~~p~d~~~~i~~~mw~P 490 (496)
|+||.+||.||+++|+++|+|+..++|+|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987677789999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=3.9e-96 Score=724.77 Aligned_cols=252 Identities=54% Similarity=0.900 Sum_probs=229.7
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 212 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 212 iQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|+||||+||||+|++|||+++| ++|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r-~~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDR-EDL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTT-SSH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccC-ccC
Confidence 799999999999999999999999999999999999999999999999985 999999999999999999999999 569
Q ss_pred chhchhhccccCCC---CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc
Q 010990 292 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 368 (496)
Q Consensus 292 ~~~k~~~a~~~~~~---~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t 368 (496)
+++|++|||+.++. .+|+|+|+++|||||||+|+++|+||||+|++|+++|||||||||||||+++||+|||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccccccCCCCcccCCCCC
Q 010990 369 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 448 (496)
Q Consensus 369 ~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~e~l~~g~l~P~~~~ 448 (496)
+|+|||||||||+||+|+||+++||||||+|||||||||++++|+++|||+||++||++||++++++++.+++|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHH
Q 010990 449 IRKISANIAANVAAKAY 465 (496)
Q Consensus 449 ireVS~~VA~aV~~~A~ 465 (496)
+|+||.+||.||+++|+
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=2.8e-93 Score=703.66 Aligned_cols=251 Identities=51% Similarity=0.775 Sum_probs=245.0
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 212 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 212 iQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||||+|||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999987 599999999999999999999999964 8
Q ss_pred chhchh---hccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc
Q 010990 292 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 368 (496)
Q Consensus 292 ~~~k~~---~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t 368 (496)
+++|++ |+++..+.++|+|+|+.+|||||||+|+++|+||+|+|++|+++|+|||||||||||+++||+|||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88877777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccccccCCCCcccCCCCC
Q 010990 369 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 448 (496)
Q Consensus 369 ~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~e~l~~g~l~P~~~~ 448 (496)
+|||||||||||+||+|+||+++|+||||+|+|||||||+++++|++|||+||++||++||++++++++.++.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHH
Q 010990 449 IRKISANIAANVAAKA 464 (496)
Q Consensus 449 ireVS~~VA~aV~~~A 464 (496)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=5.6e-83 Score=602.14 Aligned_cols=182 Identities=65% Similarity=1.207 Sum_probs=164.3
Q ss_pred HhhhHHHHHHHhhcCcccccccccccchHHHHHHHhhhhcCCCcceecccccchHHHHhhcCCCCCceEEEEecCccccc
Q 010990 21 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 100 (496)
Q Consensus 21 ~~~N~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~n~~~~~v~viVVTDG~rILG 100 (496)
|+|||+|||+++.+|+||+|||+||||||+||++||++|++|+|+|+|+.|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccchhhhHHHHhhhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCC
Q 010990 101 LGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGE 180 (496)
Q Consensus 101 LGDlG~~gm~I~~GKl~Ly~~~gGi~P~~~lPi~LDvgTnn~~Ll~DplYlG~r~~R~~g~~y~~~vdefv~av~~~fGp 180 (496)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++|++||||||+|++.+|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEeeeCCCccHHHHHHHHc
Q 010990 181 KVLIQFEDFANHNAFELLAKYG 202 (496)
Q Consensus 181 ~~li~~EDf~~~~af~iL~~yr 202 (496)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=2.6e-58 Score=448.90 Aligned_cols=223 Identities=38% Similarity=0.518 Sum_probs=207.5
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 212 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 212 iQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
|||||+|++||+++|++..|++++++||||+|||+||.|||++|.. .|++ +++||++|++|+++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999975 3886 679999999999999986668
Q ss_pred chhchhhcccc--CCC-CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc
Q 010990 292 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 368 (496)
Q Consensus 292 ~~~k~~~a~~~--~~~-~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t 368 (496)
.++|++|+++. ... .+|.|++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999764 222 478899986 999999999 8899999999997 899999999999 79999999999
Q ss_pred CCcEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccccccCCCCcccCCCCC
Q 010990 369 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 448 (496)
Q Consensus 369 ~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~e~l~~g~l~P~~~~ 448 (496)
|..||+|| +++.|+|+||+|||||||||++++++++|||+||++||++||++++++++..+.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599999 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHH
Q 010990 449 IRKISANIAANVAAKA 464 (496)
Q Consensus 449 ireVS~~VA~aV~~~A 464 (496)
|+||.+||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.88 E-value=2.5e-08 Score=83.33 Aligned_cols=86 Identities=37% Similarity=0.492 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
+||.++++++..+.+..+.+++..|++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999999763 3 257999888
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecC
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 351 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLS 351 (496)
|+||++++.++.|+++ .|+..+++|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999888888 455556899999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.78 E-value=0.00039 Score=74.82 Aligned_cols=159 Identities=18% Similarity=0.248 Sum_probs=105.8
Q ss_pred CCChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccHHHH---------------------HHHHc-------CCCcee
Q 010990 157 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLVF 208 (496)
Q Consensus 157 R~~g~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~af~i---------------------L~~yr-------~~~~~F 208 (496)
..+-++|+..+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 346678888777765 445676666 5555444433 23553 369999
Q ss_pred e----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEc
Q 010990 209 N----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 278 (496)
Q Consensus 209 n----------DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD 278 (496)
| |...||+--++-|+.. .++..+...+++|+|+|..|.++|..+... |. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEc
Confidence 8 6678898777666654 346678999999999999999999888542 53 588888
Q ss_pred CCCcccCCCcCCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010990 279 SKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 279 ~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
.+- .| ...|. ..-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+.+.
T Consensus 243 ~dp----~r--------a~~A~~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 243 VDP----IC--------ALQAAMDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred CCc----hh--------hHHHHhcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 641 11 11111 11112357888875 99999888777788888888885 334665555544
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.37 E-value=0.00079 Score=71.92 Aligned_cols=122 Identities=25% Similarity=0.366 Sum_probs=85.3
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 213 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 213 QGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
.+.-+++.+++--|.+..+. +.+.+++|+|+|..|..++..|.. .|. .+++++|+.. .| .
T Consensus 158 ~~~vSv~~~Av~la~~~~~~-l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a- 217 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS-LKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---A- 217 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---H-
Confidence 66677777887667776654 888999999999999999888864 365 5799888741 11 1
Q ss_pred hhchhhccc----cCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHccCCCc-eEEecCCCCCCCCCCHH
Q 010990 293 HFKKPWAHE----HEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPTSQSECTAE 362 (496)
Q Consensus 293 ~~k~~~a~~----~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~rP-IIFaLSNPt~~~E~~pe 362 (496)
..+++. .-...++.+++.. .|++|-+++.+ ..++++.++.+....++| +|+-+++|- ++.|+
T Consensus 218 ---~~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr---did~~ 285 (417)
T TIGR01035 218 ---EDLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR---DVDPA 285 (417)
T ss_pred ---HHHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC---CCChh
Confidence 122221 1112467788876 99999986544 468999999875433356 899999995 55554
No 17
>PLN02477 glutamate dehydrogenase
Probab=97.32 E-value=0.0063 Score=65.33 Aligned_cols=186 Identities=22% Similarity=0.233 Sum_probs=127.5
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccH--HHHHHHHcC----CCcee----------ecCCCchhHHHHH
Q 010990 158 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT----THLVF----------NDDIQGTASVVLA 221 (496)
Q Consensus 158 ~~g~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~a--f~iL~~yr~----~~~~F----------nDDiQGTa~V~LA 221 (496)
++..|-..+...|++++.+-.||..=|-=+|++..-. --+.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 4566778889999999999999965555567765321 123567753 11111 2233458877888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEcCCCcccCCCcCCCchhch-hhc
Q 010990 222 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 299 (496)
Q Consensus 222 gll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~-~vD~~GLi~~~r~~~l~~~k~-~~a 299 (496)
++-.+++..|.+|+..||+|.|-|..|-+.|++|.+. |. +++ +.|++|-|+... .|+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN--GLDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC--CCCHHHHHHHH
Confidence 8888999999999999999999999999999998653 64 466 899999999864 4553221 211
Q ss_pred ccc------CC--CCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHHHHhc
Q 010990 300 HEH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 366 (496)
Q Consensus 300 ~~~------~~--~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN-Pt~~~E~~peda~~ 366 (496)
+.. +. .-+-.+.+. .+.||||=+.- ++..|++.+..+ +-.||.--+| |+ -+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 111 00 012233343 48999996654 679999999986 6899999999 66 344 445554
No 18
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.31 E-value=0.0029 Score=62.19 Aligned_cols=130 Identities=21% Similarity=0.235 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 294 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 294 (496)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. . ++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 44445667778888889999999999999999999999999763 54 678999999988876 3 4332
Q ss_pred -chhhccccCCCCC-------HHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHHHHh
Q 010990 295 -KKPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 365 (496)
Q Consensus 295 -k~~~a~~~~~~~~-------L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN-Pt~~~E~~peda~ 365 (496)
...+.++...... =.+.+-.++.||||=++. .+..|++..+.+ .-++|.--+| |++ + .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t-~--~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTT-D--EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCC-H--HHHHHH
Confidence 2222221100000 013344568999997776 669999999988 5789998888 874 2 456666
Q ss_pred c
Q 010990 366 T 366 (496)
Q Consensus 366 ~ 366 (496)
+
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 5
No 19
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.29 E-value=0.013 Score=63.52 Aligned_cols=180 Identities=16% Similarity=0.103 Sum_probs=118.9
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCcc--HHHHHHHHcC---CC-cee----------ecCCCchhHHHHH
Q 010990 158 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGT---TH-LVF----------NDDIQGTASVVLA 221 (496)
Q Consensus 158 ~~g~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~--af~iL~~yr~---~~-~~F----------nDDiQGTa~V~LA 221 (496)
.+-.|...|.-.|+..+.+.+||+.-|--+|++..- =--+.+.|+. .. -++ .+--+-||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 456677888999999999999998888888887532 2235677753 11 233 2334568877888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc
Q 010990 222 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 301 (496)
Q Consensus 222 gll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~ 301 (496)
++..+++..|.+|+++||+|.|.|..|...|+.|.+. |. +=+-+-|++|-|+... .++..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8889999999999999999999999999999999763 64 3455699999998753 466554433211
Q ss_pred cCC--CCCHHHH-------------hcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010990 302 HEP--VNNLLDA-------------VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 352 (496)
Q Consensus 302 ~~~--~~~L~e~-------------v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN 352 (496)
... .+++.+. +-.++.|+||=+.. .+..|++..+.+... -.-+|.--+|
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl-~n~I~~~na~~l~a~-g~~~V~EgAN 344 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSAT-QNELNGDDARQLVAN-GVIAVSEGAN 344 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeeccc-ccccCHHHHHHHHhc-CCeEEECCCC
Confidence 000 0111111 11245777775544 457777777776321 0125555555
No 20
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.22 E-value=0.016 Score=62.88 Aligned_cols=188 Identities=17% Similarity=0.180 Sum_probs=129.7
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccHHH---HHHHHcCC---C-------cee----ecCCCchhHHHH
Q 010990 158 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGTT---H-------LVF----NDDIQGTASVVL 220 (496)
Q Consensus 158 ~~g~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~af~---iL~~yr~~---~-------~~F----nDDiQGTa~V~L 220 (496)
.+..|-..|...|++++.+.+||..=|--+|++. +... +.++|+.- . |+- .+--..||-=+.
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt-~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~ 216 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLV 216 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCC-CHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHH
Confidence 4556778899999999999999977777788774 3322 46777631 1 111 123446777778
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-cCCCcccCCCcCCCchh-----
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF----- 294 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~v-D~~GLi~~~r~~~l~~~----- 294 (496)
.++..+++..+.+|++.||+|.|-|..|...|++|.+ .|. +++-+ |++|-|+... .|+..
T Consensus 217 ~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~ 282 (445)
T PRK09414 217 YFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEI 282 (445)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHHH
Confidence 8888899999999999999999999999999999964 364 45555 9999999864 45432
Q ss_pred ch-------hhccc-cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHHHHh
Q 010990 295 KK-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 365 (496)
Q Consensus 295 k~-------~~a~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN-Pt~~~E~~peda~ 365 (496)
|. .|... ....-+- +.+-.++.||||=+.. .+..|++-...+-. ++..||.=-+| |+ -+| +++.+
T Consensus 283 k~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L 356 (445)
T PRK09414 283 KEVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVF 356 (445)
T ss_pred HHhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHH
Confidence 11 11110 0000112 2334568999997665 77999999999843 45789999999 76 344 44555
Q ss_pred c
Q 010990 366 T 366 (496)
Q Consensus 366 ~ 366 (496)
+
T Consensus 357 ~ 357 (445)
T PRK09414 357 L 357 (445)
T ss_pred H
Confidence 4
No 21
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.21 E-value=0.0051 Score=66.08 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=93.4
Q ss_pred CCceee----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 010990 204 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 273 (496)
Q Consensus 204 ~~~~Fn----------DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~ 273 (496)
.+|+|+ |...||+--++-+++. .++..+...+++|+|+|..|.++|..+... |. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~~-----Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-----GA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------E
Confidence 788885 6678999988877765 567789999999999999999999887542 63 4
Q ss_pred EEEEcCCCcccCCCcCCCchhchhhccccC-CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010990 274 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 352 (496)
Q Consensus 274 i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~-~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN 352 (496)
++++|.+ +.+...|+... ..-++.++++. .|++|-+++..++|+++.++.|. +.-+|.-.+.
T Consensus 228 ViV~d~d------------~~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD------------PICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC------------hhhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777763 12223333211 11246788875 89999998877788888888885 4557766777
Q ss_pred CCCCCCCCHHHHhc
Q 010990 353 PTSQSECTAEEAYT 366 (496)
Q Consensus 353 Pt~~~E~~peda~~ 366 (496)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 63 6888887654
No 22
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.14 E-value=0.0023 Score=65.75 Aligned_cols=136 Identities=23% Similarity=0.358 Sum_probs=85.0
Q ss_pred ccHHHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 010990 192 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 271 (496)
Q Consensus 192 ~~af~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~ 271 (496)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|.+..|. +.+.||+|+|+|..|..++..+.. .|.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KGV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cCC------
Confidence 35666666666544333 34455666666666666655 889999999999999988888864 243
Q ss_pred CcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccC--CCceEEe
Q 010990 272 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILA 349 (496)
Q Consensus 272 ~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~--~rPIIFa 349 (496)
++|+++|+. ..| .....+.|-.......++.++++. +|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999874 111 111112221111112357777775 8999998886643 66666654322 2347778
Q ss_pred cCCCC
Q 010990 350 LSNPT 354 (496)
Q Consensus 350 LSNPt 354 (496)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99985
No 23
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.08 E-value=0.0079 Score=64.54 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=87.7
Q ss_pred CCceee----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 010990 204 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 273 (496)
Q Consensus 204 ~~~~Fn----------DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~ 273 (496)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|.|..|.++|..+... |. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-----Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARGM-----GA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-----cC-------E
Confidence 788887 777899977776655 4567778999999999999999999987542 53 5
Q ss_pred EEEEcCCCcccCCCcCCCchhchhhccc-cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010990 274 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 352 (496)
Q Consensus 274 i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN 352 (496)
++++|.+- .| ...|+. .-...++.|+++. .|++|-+.+..++++++.+..|. +.-||.-.+.
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887641 11 111111 1112357788875 89999887777778888888875 4557777777
Q ss_pred CCCCCCCCHHHH
Q 010990 353 PTSQSECTAEEA 364 (496)
Q Consensus 353 Pt~~~E~~peda 364 (496)
.. .|+.-++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 64 55555544
No 24
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.05 E-value=0.0024 Score=68.32 Aligned_cols=124 Identities=26% Similarity=0.403 Sum_probs=80.2
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
+..+|+.+|+--|.+..+ ++.+.+++|+|+|..|..++..+.. .|. ++++++|+.. .| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~----~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL----ER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH----HH---HHH
Confidence 355666666655544444 5888999999999999999888753 364 6799887741 11 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHcc--CCCceEEecCCCCCCCCCCH
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASF--NEKPLILALSNPTSQSECTA 361 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evv~~M~~~--~~rPIIFaLSNPt~~~E~~p 361 (496)
..+.+........++.+++.. +|++|-+++.+ ..++++.++.+.+. ....+|+=||+|- ++.|
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr---did~ 287 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR---DIEP 287 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC---CCcc
Confidence 111221011112456677765 99999987755 46899999987532 2346889999995 4544
No 25
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.97 E-value=0.048 Score=59.41 Aligned_cols=189 Identities=17% Similarity=0.193 Sum_probs=130.2
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccHHH---HHHHHcC---CC-ceee----------cCCCchhHHHH
Q 010990 158 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---TH-LVFN----------DDIQGTASVVL 220 (496)
Q Consensus 158 ~~g~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~af~---iL~~yr~---~~-~~Fn----------DDiQGTa~V~L 220 (496)
.+..|-..|...||..+.+..||+.-|--.|++. +... +.+.|+. .. .|+- +--.-||-=+.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556677889999999999999999898899884 3333 3556642 12 2221 11234887788
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEcCCCcccCCCcCCCchhchhhc
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKKPWA 299 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~-~vD~~GLi~~~r~~~l~~~k~~~a 299 (496)
.++-.+++..+.+|++.|++|-|.|..|...|+.|.+. |. +++ +.|++|-|+... .++..+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88889999999999999999999999999999999763 64 455 999999999864 4655443211
Q ss_pred ccc--CCCCCHHH--------------HhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHH
Q 010990 300 HEH--EPVNNLLD--------------AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 362 (496)
Q Consensus 300 ~~~--~~~~~L~e--------------~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN-Pt~~~E~~pe 362 (496)
.+. ...+++.+ .+=.++.|||+=+.. .+..|++-.+.+-+ +...+|.=-+| |++ +| ++
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t-~e--A~ 362 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT-IE--AT 362 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC-HH--HH
Confidence 100 00011111 112368999998777 56999999998843 35678888888 773 23 44
Q ss_pred HHhc
Q 010990 363 EAYT 366 (496)
Q Consensus 363 da~~ 366 (496)
+.++
T Consensus 363 ~~L~ 366 (454)
T PTZ00079 363 HLFK 366 (454)
T ss_pred HHHH
Confidence 5554
No 26
>PLN02494 adenosylhomocysteinase
Probab=96.92 E-value=0.011 Score=64.45 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=94.4
Q ss_pred CCceee----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 010990 204 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 273 (496)
Q Consensus 204 ~~~~Fn----------DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~ 273 (496)
.+|++| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|. +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 678876 557899988888887 467777999999999999999999999853 254 5
Q ss_pred EEEEcCCCcccCCCcCCCchhchhhccc-cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010990 274 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 352 (496)
Q Consensus 274 i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN 352 (496)
++++|.+.. +...|.. .-..-++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.
T Consensus 280 VIV~e~dp~------------r~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr 342 (477)
T PLN02494 280 VIVTEIDPI------------CALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGH 342 (477)
T ss_pred EEEEeCCch------------hhHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCC
Confidence 887876421 1111111 0011257888876 99999877766778999999996 6678888888
Q ss_pred CCCCCCCCHHHHhcc
Q 010990 353 PTSQSECTAEEAYTW 367 (496)
Q Consensus 353 Pt~~~E~~peda~~~ 367 (496)
+. .|+.-+...++
T Consensus 343 ~~--~eID~~aL~~~ 355 (477)
T PLN02494 343 FD--NEIDMLGLETY 355 (477)
T ss_pred CC--CccCHHHHhhc
Confidence 75 77777766554
No 27
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.87 E-value=0.05 Score=59.12 Aligned_cols=189 Identities=15% Similarity=0.125 Sum_probs=130.7
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccHHH---HHHHHcC----CCceeec---CC-------CchhHHHH
Q 010990 158 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT----THLVFND---DI-------QGTASVVL 220 (496)
Q Consensus 158 ~~g~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~af~---iL~~yr~----~~~~FnD---Di-------QGTa~V~L 220 (496)
.+..|-..|.-.|++.+.+-.||+.=|-=.|++. ++.. +++.|+. ...++.- +. +.||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 3555778889999999998889987777777773 3333 3677753 2223211 12 23888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhc-
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA- 299 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a- 299 (496)
.++..+++..|.+|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|+... .++..+..+.
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999999653 65 5577889999998854 4655432111
Q ss_pred --------------cccCCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHH
Q 010990 300 --------------HEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 362 (496)
Q Consensus 300 --------------~~~~~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN-Pt~~~E~~pe 362 (496)
..-+.. -+-.+ +=.++.||||=+.. .+..|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 010010 01122 22468999997766 57999999999853 35779999999 652 33 44
Q ss_pred HHhc
Q 010990 363 EAYT 366 (496)
Q Consensus 363 da~~ 366 (496)
+.++
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 28
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.80 E-value=0.0089 Score=61.04 Aligned_cols=138 Identities=20% Similarity=0.284 Sum_probs=91.6
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 212 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 212 iQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
+..+-.++=.++.-+++..+..|.+.+++|+|+|..|..+|+.+... |. +++++|++. . .+
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~---~~ 187 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A---DL 187 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HH
Confidence 34556666667777888888899999999999999999999999642 53 588888741 1 11
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHHHHhcccCC
Q 010990 292 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYTWSKG 370 (496)
Q Consensus 292 ~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN-Pt~~~E~~peda~~~t~G 370 (496)
...+ .+....-...+|.+.++. .|++|=+. +.+.++++.++.|. +.-+|+=+|- | -+...+.|.+ -+-
T Consensus 188 ~~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P---g~tdf~~Ak~-~G~ 256 (287)
T TIGR02853 188 ARIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP---GGTDFEYAKK-RGI 256 (287)
T ss_pred HHHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC---CCCCHHHHHH-CCC
Confidence 1110 000011112457777775 99999654 34578999998885 4567776654 5 4666655544 344
Q ss_pred cEEEecCCC
Q 010990 371 RAIFASGSP 379 (496)
Q Consensus 371 ~ai~AsGsP 379 (496)
+++.+-|-|
T Consensus 257 ~a~~~~glP 265 (287)
T TIGR02853 257 KALLAPGLP 265 (287)
T ss_pred EEEEeCCCC
Confidence 778888865
No 29
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.71 E-value=0.012 Score=55.87 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhch
Q 010990 218 VVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 296 (496)
Q Consensus 218 V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~ 296 (496)
++.|+ +-.++-...+|++.|++|+|+|. .|..+|+.|.. .|. ++++++++
T Consensus 27 ~~~a~-v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~---------------- 77 (168)
T cd01080 27 TPAGI-LELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK---------------- 77 (168)
T ss_pred hHHHH-HHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC----------------
Confidence 34443 44444455689999999999998 59889888864 242 58888864
Q ss_pred hhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010990 297 PWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 297 ~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
..+|.+.++. .|++|.+.+.+..|+++.++ +.-+|+=++.|-
T Consensus 78 --------~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 --------TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred --------chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0346778887 99999999988899999764 346888888886
No 30
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.65 E-value=0.011 Score=58.52 Aligned_cols=123 Identities=24% Similarity=0.308 Sum_probs=89.4
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 213 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 213 QGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-||-=+..++-.+++..+.+|++.||+|.|-|..|-++|++|.+. |. +=+.+.|++|-++... .++
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~--Gld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD--GLD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCC
Confidence 4577777788888889889999999999999999999999998653 54 3355999999998764 354
Q ss_pred hhch-hhccccCC--------CCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CC
Q 010990 293 HFKK-PWAHEHEP--------VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 354 (496)
Q Consensus 293 ~~k~-~~a~~~~~--------~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN-Pt 354 (496)
.... .+.+.... .-+- +.+-..++||||=++ .++..|++.+..+ +-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~-~~i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITN-EELLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCC-ccceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 3221 11111100 0112 233445899999877 4779999999998 5899999999 65
No 31
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.64 E-value=0.0024 Score=57.79 Aligned_cols=100 Identities=25% Similarity=0.417 Sum_probs=66.3
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc---cCCCCCHH
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLL 309 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~---~~~~~~L~ 309 (496)
++++.|++|+|||.+|-+++..|.. .|. ++|++++|. ..| .....+.|... .-...++.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~-----~g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~~ 70 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAA-----LGA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDLE 70 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHH-----TTS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGHC
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHH-----cCC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHHH
Confidence 7899999999999999888888865 365 789999874 222 22333333111 11234566
Q ss_pred HHhcccCCcEEEEccCCCC-CCCHHHHHHHHccCCCceEEecCCCC
Q 010990 310 DAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 310 e~v~~vkptvLIG~S~~~g-~Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
+.+.. .|++|-+++.+. .++++.++..... ..+||=||+|-
T Consensus 71 ~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr 112 (135)
T PF01488_consen 71 EALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPR 112 (135)
T ss_dssp HHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-
T ss_pred HHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCC
Confidence 67765 999999887663 6888887764211 24999999995
No 32
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.50 E-value=0.038 Score=60.46 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=85.7
Q ss_pred CCceeecCCCchhHHH-------HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEE
Q 010990 204 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 276 (496)
Q Consensus 204 ~~~~FnDDiQGTa~V~-------LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~ 276 (496)
.+|++|-+--.|-.+. ++.+=+.+|.++..|...+++|+|.|..|.++|..+... |. ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~-----Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGF-----GA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEE
Confidence 7999986665554433 444455667788999999999999999999999998642 54 4777
Q ss_pred EcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010990 277 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 277 vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
+|++-. +. +.... ..-...++.++++. .|++|-+.+..+.|+++.++.|. +.-|+.-.+...
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 766411 10 00000 11112468888876 99999888777899999999996 556776666653
No 33
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.47 E-value=0.019 Score=58.74 Aligned_cols=108 Identities=20% Similarity=0.310 Sum_probs=79.6
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+.+-.|-.|++..++-.+.+++.++++++|+|- +|-.+|.+|.. .|. .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~ga-------tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----ANA-------TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CCC-------EEEEEeCC------------
Confidence 446777799999999999999999999999997 99999999864 242 58888762
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEec-CCCC---CCCCCCHHHHh
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPT---SQSECTAEEAY 365 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaL-SNPt---~~~E~~peda~ 365 (496)
..+|.+.++. +|++|-+.+.++.|+.+.++ +.-+|+=. .||. -.-++.+|++.
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~ 249 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIE 249 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhh
Confidence 1236666765 99999999888888887764 44556544 3663 11255555554
No 34
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.39 E-value=0.016 Score=62.26 Aligned_cols=214 Identities=20% Similarity=0.320 Sum_probs=130.5
Q ss_pred ccHHHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 010990 192 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 271 (496)
Q Consensus 192 ~~af~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~ 271 (496)
..||..=.|+|.+. +=-.|--+|.-|++=-|.++.|. |++.+++|+|||..|-.+|.-|.. .|+
T Consensus 139 qkAi~~gKrvRseT----~I~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~-----~g~------ 202 (414)
T COG0373 139 QKAISVGKRVRSET----GIGKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAE-----KGV------ 202 (414)
T ss_pred HHHHHHHHHhhccc----CCCCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHh-----CCC------
Confidence 45555566666521 11145555666667777777765 999999999999999999988876 366
Q ss_pred CcEEEEcCCCcccCCCcCCCchhchhhcccc----CCCCCHHHHhcccCCcEEEEcc-CCCCCCCHHHHHHHHccCCCce
Q 010990 272 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPL 346 (496)
Q Consensus 272 ~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~e~v~~vkptvLIG~S-~~~g~Ft~evv~~M~~~~~rPI 346 (496)
++|+++.+. ..| -+.+|++- -....|.+.+.. .||+|-.+ ++...++++.++.-.+..++=+
T Consensus 203 ~~i~IaNRT----~er-------A~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~l 269 (414)
T COG0373 203 KKITIANRT----LER-------AEELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLL 269 (414)
T ss_pred CEEEEEcCC----HHH-------HHHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeE
Confidence 789988762 222 12334331 122466777776 89888654 4445789888887655444459
Q ss_pred EEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHH
Q 010990 347 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 426 (496)
Q Consensus 347 IFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~ 426 (496)
||=++||-. +.| ..+.-+|+++|-==-+-.+.-.-..-..+...+ |+
T Consensus 270 ivDiavPRd---ie~-----------------------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~~~-ae 316 (414)
T COG0373 270 IVDIAVPRD---VEP-----------------------------EVGELPNVFLYTIDDLEEIVEENLEARKEEAAK-AE 316 (414)
T ss_pred EEEecCCCC---CCc-----------------------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHHHH-HH
Confidence 999999962 111 112345666665444444443322222232222 22
Q ss_pred HHHhc-cc--cccCCCCcccCCCCCccchHHHHHHHHHHHHHHc
Q 010990 427 ALAKQ-VT--EENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 467 (496)
Q Consensus 427 aLA~~-v~--~e~l~~g~l~P~~~~ireVS~~VA~aV~~~A~~~ 467 (496)
+|=+. +. .+.+....+-|.+..+|+-+..|...-.+.|.+.
T Consensus 317 ~iIeee~~~~~~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~ 360 (414)
T COG0373 317 AIIEEELAEFMEWLKKLEVVPTIRALREQAEDVREEELEKALKK 360 (414)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22111 10 1124556788999999988888888888888754
No 35
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.28 E-value=0.026 Score=59.35 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
|+++...++--|.+..|..|++.+++|.|| |+.|--+|++|... .|. +++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 677888888889999999999999999999 89999999998642 243 679988764 112 333
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCC--CCHHHHHHHHccCCCceEEecCCCC
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT--FTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~--Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
.+.++.+ ....++.+++.. +|+++=+++.+.. .+++.++ +.=+|+=++.|-
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~------~~~~viDiAvPR 249 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETLK------KPCLMIDGGYPK 249 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC------CCeEEEEecCCC
Confidence 3333321 122367788876 9999988776433 6776552 334556689985
No 36
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.26 E-value=0.028 Score=54.34 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=82.5
Q ss_pred chhHHHHHHHHHHHHHh--CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 214 GTASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~--g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
.||-=+..++-.+++.. +.++++.+|+|.|.|..|..+|+.|.+. |. +++++|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH-------HHH
Confidence 35555666677777775 8899999999999999999999988753 63 588888651 113
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHHHHhc
Q 010990 292 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 366 (496)
Q Consensus 292 ~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN-Pt~~~E~~peda~~ 366 (496)
..++..|.. ... +..+... .+.|+++=++. ++..|++.++.| +-++|..-+| |++. ..+++.++
T Consensus 65 ~~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccCC--HhHHHHHH
Confidence 333333311 111 1233333 37999995555 679999999999 4679999988 7632 33445554
No 37
>PLN00203 glutamyl-tRNA reductase
Probab=96.26 E-value=0.013 Score=64.62 Aligned_cols=202 Identities=19% Similarity=0.256 Sum_probs=116.2
Q ss_pred CchhHHHHHHHHHHHHHhCC-CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 213 QGTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 213 QGTa~V~LAgll~Alr~~g~-~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
.|--+|+-+|+=-|.+..|. +|.+.+|+|+|||..|..++..|.. .|. ++|+++++. ..+ .
T Consensus 242 ~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a 303 (519)
T PLN00203 242 SGAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---V 303 (519)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---H
Confidence 34445565666666677664 6999999999999999988887753 364 679998875 122 2
Q ss_pred chhchhhcc---ccCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHccC---CCc-eEEecCCCCCCCCCCHHH
Q 010990 292 QHFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EKP-LILALSNPTSQSECTAEE 363 (496)
Q Consensus 292 ~~~k~~~a~---~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~---~rP-IIFaLSNPt~~~E~~ped 363 (496)
......|-. ......++.+++.. +|++|.+++.+ ..+++++++.|-+.. .+| +|+=||.|-. +.|+-
T Consensus 304 ~~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd---Idp~v 378 (519)
T PLN00203 304 AALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN---VGACV 378 (519)
T ss_pred HHHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC---Ccccc
Confidence 222222210 01123467788876 99999876544 479999999984321 244 6677999952 11210
Q ss_pred HhcccCCcEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHH-Hhccc--cccCCCC
Q 010990 364 AYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEAL-AKQVT--EENFEKG 440 (496)
Q Consensus 364 a~~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aL-A~~v~--~e~l~~g 440 (496)
+...|+++|===-|-.+...-..-..+-... |+.+ .+.+. .+.+...
T Consensus 379 -----------------------------~~l~~v~lydiDdL~~i~~~n~~~R~~~~~~-Ae~II~ee~~~F~~w~~~~ 428 (519)
T PLN00203 379 -----------------------------SELESARVYNVDDLKEVVAANKEDRLRKAME-AQTIIREESKNFEAWRDSL 428 (519)
T ss_pred -----------------------------ccCCCCeEEEeccHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 0111222222112222322222212211222 2222 11111 1124556
Q ss_pred cccCCCCCccchHHHHHHHHHHHHHHc
Q 010990 441 LIYPPFSNIRKISANIAANVAAKAYEL 467 (496)
Q Consensus 441 ~l~P~~~~ireVS~~VA~aV~~~A~~~ 467 (496)
.+-|-+..+|+-...|..+=.+.+.+.
T Consensus 429 ~~~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 429 ETVPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999998888888764
No 38
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.13 E-value=0.046 Score=56.06 Aligned_cols=127 Identities=23% Similarity=0.302 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhh
Q 010990 219 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 298 (496)
Q Consensus 219 ~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~ 298 (496)
+-+++..+++..+..+...|++|+|+|.+|..++..+... |. +++++|++- . +...
T Consensus 135 aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~-----Ga-------~V~v~~r~~---~---------~~~~ 190 (296)
T PRK08306 135 AEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKAL-----GA-------NVTVGARKS---A---------HLAR 190 (296)
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEECCH---H---------HHHH
Confidence 3345666777778889999999999999999998888642 52 688888851 1 1111
Q ss_pred cccc----CCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCC-cEE
Q 010990 299 AHEH----EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-RAI 373 (496)
Q Consensus 299 a~~~----~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G-~ai 373 (496)
++.. -...++.+.++. .|++|-++. ...++++.++.|. +..+|+=++... -.|..+.|.+ .| +++
T Consensus 191 ~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~~ 260 (296)
T PRK08306 191 ITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKAL 260 (296)
T ss_pred HHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEEE
Confidence 2110 112467788875 999998653 4578999998886 466777555432 2344443322 24 445
Q ss_pred EecCCC
Q 010990 374 FASGSP 379 (496)
Q Consensus 374 ~AsGsP 379 (496)
.++|-|
T Consensus 261 ~~~~lp 266 (296)
T PRK08306 261 LAPGLP 266 (296)
T ss_pred EECCCC
Confidence 556644
No 39
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.05 E-value=0.089 Score=53.32 Aligned_cols=133 Identities=20% Similarity=0.152 Sum_probs=92.5
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~-~vD~~GLi~~~r~~~l~ 292 (496)
-||-=+.-++-.+++..+.+|+..||+|.|-|..|.+.|++|.+. |. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC--CCC
Confidence 466666777888888889999999999999999999999999753 64 455 999999999864 454
Q ss_pred hhchh---------------hccccCCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CC
Q 010990 293 HFKKP---------------WAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 354 (496)
Q Consensus 293 ~~k~~---------------~a~~~~~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN-Pt 354 (496)
..+.. |....+.. -+-.|.. .++.||||=+.. .+..|++-+..+.+ ++-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 33221 10000000 0222222 457999997655 67999999999843 45789999999 87
Q ss_pred CCCCCCHHHHhc
Q 010990 355 SQSECTAEEAYT 366 (496)
Q Consensus 355 ~~~E~~peda~~ 366 (496)
+ + .+++.++
T Consensus 159 t-~--~a~~~L~ 167 (254)
T cd05313 159 T-A--EAIEVFR 167 (254)
T ss_pred C-H--HHHHHHH
Confidence 3 2 3455554
No 40
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.04 E-value=0.1 Score=52.76 Aligned_cols=193 Identities=18% Similarity=0.154 Sum_probs=100.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc-------hhhcc---------
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-------KPWAH--------- 300 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k-------~~~a~--------- 300 (496)
.||.|+|+|..|.+||..+... |. +++++|.+- . .++..+ ..+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----GF-------DVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888653 53 688998741 1 111111 11100
Q ss_pred --c----cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEE
Q 010990 301 --E----HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 374 (496)
Q Consensus 301 --~----~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~ 374 (496)
. -....++.+++++ +|++|=+-.-.-.+.+++++...+.++...|+ .||.+++ ++.++.+.+.-.-=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF-ATNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE-EECcccC---CHHHHHhhcCCcccE
Confidence 0 0113578888876 88888543211125667777777766655666 3566544 444444432211113
Q ss_pred ecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccccccCCCCcccCCCCCccchHH
Q 010990 375 ASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISA 454 (496)
Q Consensus 375 AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~e~l~~g~l~P~~~~ireVS~ 454 (496)
....||.|+.... .. -+.....-+++.+.. +..+....- ...+.=.-+.--.+..
T Consensus 139 vg~Hf~~p~~~~~---------lv----------evv~~~~t~~~~~~~-~~~~~~~~G-----k~pv~v~~d~pgfi~n 193 (287)
T PRK08293 139 LALHFANEIWKNN---------TA----------EIMGHPGTDPEVFDT-VVAFAKAIG-----MVPIVLKKEQPGYILN 193 (287)
T ss_pred EEEcCCCCCCcCC---------eE----------EEeCCCCCCHHHHHH-HHHHHHHcC-----CeEEEecCCCCCHhHH
Confidence 3346776653221 11 222223346665544 445444332 2222111111134556
Q ss_pred HHHHHHHHHHH---HcCCCCCCCCchhHHHHH
Q 010990 455 NIAANVAAKAY---ELGVATRLPRPQNLVKCA 483 (496)
Q Consensus 455 ~VA~aV~~~A~---~~GlA~~~~~p~d~~~~i 483 (496)
++-.++...|. ++|+|+ |+|+....
T Consensus 194 Ri~~~~~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 194 SLLVPFLSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred HHHHHHHHHHHHHHHcCCCC----HHHHHHHH
Confidence 66666666554 589875 46665544
No 41
>PLN00106 malate dehydrogenase
Probab=95.96 E-value=0.044 Score=57.16 Aligned_cols=118 Identities=25% Similarity=0.333 Sum_probs=80.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhc
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 299 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a 299 (496)
|.-|.|+|..|..-. .||+|+|| |.-|..+|..|.. .|+ ...+.++|.+- .++..-+|.+-.. +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 445778898887654 59999999 9999999988754 244 25799999865 2221111322111 11
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCC
Q 010990 300 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 300 ~~~--~~~~~L~e~v~~vkptvLIG~S~~~g~--------------Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
+-. ...+++.+++++ .|+.|=+.+.+.. ..+++.+.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 111 133567888988 8988877665422 2357888899999999999999997
No 42
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.90 E-value=0.026 Score=60.64 Aligned_cols=195 Identities=15% Similarity=0.200 Sum_probs=106.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
|.-+|+-+|+=-|.+..+ ++++.|++|+|||.+|-.+|..|.. .|. ++|+++++. ..|. ..
T Consensus 160 ~~vSv~~~Av~la~~~~~-~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~ra---~~ 220 (414)
T PRK13940 160 CPVSVAFSAITLAKRQLD-NISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEKA---QK 220 (414)
T ss_pred CCcCHHHHHHHHHHHHhc-CccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHH---HH
Confidence 333455555555555543 4889999999999999888888754 365 679988874 2221 11
Q ss_pred hchhhc-cccCCCCCHHHHhcccCCcEEEEccCCCC-CCCHHHHHHHHccCCCce-EEecCCCCCCCCCCHHHHhcccCC
Q 010990 294 FKKPWA-HEHEPVNNLLDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPL-ILALSNPTSQSECTAEEAYTWSKG 370 (496)
Q Consensus 294 ~k~~~a-~~~~~~~~L~e~v~~vkptvLIG~S~~~g-~Ft~evv~~M~~~~~rPI-IFaLSNPt~~~E~~peda~~~t~G 370 (496)
....|. ....+..+|.+.+.. .|++|-+++.+. ++|++.++ .+|. |+=||+|-. +.|+-
T Consensus 221 La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPRd---idp~v------- 282 (414)
T PRK13940 221 ITSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQA---LDPKL------- 282 (414)
T ss_pred HHHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCCC---CCccc-------
Confidence 222221 011123566777776 999998877664 67866542 3564 577999952 11110
Q ss_pred cEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccc--cccCCCCcccCCCCC
Q 010990 371 RAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT--EENFEKGLIYPPFSN 448 (496)
Q Consensus 371 ~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~--~e~l~~g~l~P~~~~ 448 (496)
+...|+++|===-+-.+......-..+....|-+-+.+.+. .+.+....+-|-+.+
T Consensus 283 ----------------------~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~iI~e~~~~f~~w~~~~~~~p~I~~ 340 (414)
T PRK13940 283 ----------------------GELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKIIVKSLEEYLEKEKAIISNSAIKE 340 (414)
T ss_pred ----------------------cCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 11122222221112222222111112112221111111111 112455678999999
Q ss_pred ccchHHHHHHHHHHHHHHc
Q 010990 449 IRKISANIAANVAAKAYEL 467 (496)
Q Consensus 449 ireVS~~VA~aV~~~A~~~ 467 (496)
+|+-..+|...-.+.+.+.
T Consensus 341 lr~~~~~i~~~el~r~~~~ 359 (414)
T PRK13940 341 LFQKADGLVDLSLEKSLAK 359 (414)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9988888888888888754
No 43
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.80 E-value=0.027 Score=57.35 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch-hchhhc
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWA 299 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~-~k~~~a 299 (496)
.|++.+++..+..++..+++|+|||.||-+++..|.. .|+ ++|+++|+. ..|.+.+.. .+..+.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4567777765566888999999999999999988875 376 679999985 222221211 111111
Q ss_pred c-ccCCCCCHHHHhcccCCcEEEEccCCC
Q 010990 300 H-EHEPVNNLLDAVKVIKPTILIGSSGVG 327 (496)
Q Consensus 300 ~-~~~~~~~L~e~v~~vkptvLIG~S~~~ 327 (496)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 00112445556654 99999887654
No 44
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.75 E-value=0.036 Score=57.04 Aligned_cols=97 Identities=18% Similarity=0.336 Sum_probs=76.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 213 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 213 QGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
.+-.-+|-+|++.-++-.+.+|+..+++++|+|. .|..+|.+|.. .| ..+++++|+.
T Consensus 135 ~~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t---------- 192 (286)
T PRK14175 135 QTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS---------- 192 (286)
T ss_pred CCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc----------
Confidence 3456788999999999999999999999999988 99999999964 24 3588887641
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCC
Q 010990 292 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 353 (496)
Q Consensus 292 ~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNP 353 (496)
.+|.+.++. +|++|...+.++.|++++++ +.-+|.=++.|
T Consensus 193 --------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 --------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred --------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 247788887 99999999999999998764 33455555543
No 45
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.62 E-value=0.04 Score=49.61 Aligned_cols=108 Identities=22% Similarity=0.332 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 300 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~ 300 (496)
.|+.+|++..+..+++.+++|+|+|..|..+++.+.. .|. .+++++|++ ..+ .....+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~-----~g~------~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAE-----LGA------AKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC----HHH---HHHHHHHHhh
Confidence 5889999988888999999999999888888887754 232 578888874 111 2222222211
Q ss_pred c--cCCCCCHHHHhcccCCcEEEEccCCCC------CCCHHHHHHHHccCCCceEEecC-CCC
Q 010990 301 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS-NPT 354 (496)
Q Consensus 301 ~--~~~~~~L~e~v~~vkptvLIG~S~~~g------~Ft~evv~~M~~~~~rPIIFaLS-NPt 354 (496)
. .....++.++++. +|++|-+...+- .|.+.- + .+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~---~---~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL---L---KPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH---c---CCCCEEEEcCcCCC
Confidence 1 0123456666665 999997765432 122221 2 3566777774 454
No 46
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.35 E-value=0.039 Score=55.34 Aligned_cols=128 Identities=23% Similarity=0.316 Sum_probs=88.5
Q ss_pred CCCchhHHHHHHHHHHHHHhCCC-cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcC
Q 010990 211 DIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 289 (496)
Q Consensus 211 DiQGTa~V~LAgll~Alr~~g~~-l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~ 289 (496)
--+-||-=+..++-.+++..+.. ++..|++|-|.|..|...|+.|.+. |. +=+-+-|++|.|++..
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~-- 72 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPD-- 72 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETT--
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCC--
Confidence 34567777888888999997766 9999999999999999999999764 54 4466779999988653
Q ss_pred CCchhc-hhhccccCC-CCCHH-----------H--HhcccCCcEEEEccCCCCCCCHHHHH-HHHccCCCceEEecCC-
Q 010990 290 SLQHFK-KPWAHEHEP-VNNLL-----------D--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN- 352 (496)
Q Consensus 290 ~l~~~k-~~~a~~~~~-~~~L~-----------e--~v~~vkptvLIG~S~~~g~Ft~evv~-~M~~~~~rPIIFaLSN- 352 (496)
.++... ..+.+.... ...+. + .+=.++.||||=+ +.++.+|++.+. .+. +.-+||.--+|
T Consensus 73 Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~ 149 (244)
T PF00208_consen 73 GLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANG 149 (244)
T ss_dssp EEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSS
T ss_pred CchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcch
Confidence 232111 111111111 11111 1 3444699999988 557899999998 763 24789999999
Q ss_pred CC
Q 010990 353 PT 354 (496)
Q Consensus 353 Pt 354 (496)
|+
T Consensus 150 p~ 151 (244)
T PF00208_consen 150 PL 151 (244)
T ss_dssp SB
T ss_pred hc
Confidence 55
No 47
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.23 E-value=0.097 Score=49.60 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||+.+.+.+..+++..|..+++.+++++|+ |..|-.++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 677777888888887788999999999997 9998888887764 23 368888765
No 48
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.23 E-value=0.057 Score=57.08 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=63.0
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc----cCCCCCHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 309 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~ 309 (496)
+...+++|+|+|.+|.+.++.+... |. ++.++|++ ..| +......|... ......|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 5678899999999999999988643 53 48889874 111 11111122111 01123577
Q ss_pred HHhcccCCcEEEEccCC-----CCCCCHHHHHHHHccCCCceEEecCC
Q 010990 310 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN 352 (496)
Q Consensus 310 e~v~~vkptvLIG~S~~-----~g~Ft~evv~~M~~~~~rPIIFaLSN 352 (496)
+.++. .|++|.+... +..+|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88875 9999987532 3468999999985 5678887774
No 49
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.89 E-value=0.12 Score=54.36 Aligned_cols=91 Identities=11% Similarity=0.194 Sum_probs=58.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHH
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 311 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~ 311 (496)
.+|++.|++++|||..|--+|+.|.+ .|. ++|+++.+.-- + .+|.... .++
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~------~~i~v~nRt~~----~--------~~~~~~~------~~~ 220 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQR-----QGY------SRITFCSRQQL----T--------LPYRTVV------REE 220 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHH-----cCC------CEEEEEcCCcc----c--------cchhhhh------hhh
Confidence 46999999999999998777777754 365 67999888631 1 2232100 011
Q ss_pred hc-ccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCceEEecCCCCC
Q 010990 312 VK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTS 355 (496)
Q Consensus 312 v~-~vkptvLIG~----S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~ 355 (496)
+. ..+.||+|-. +++....+.+.++.. -+| ++|=||+|-.
T Consensus 221 ~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~r-~~iDLAvPRd 265 (338)
T PRK00676 221 LSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PDR-IVFDFNVPRT 265 (338)
T ss_pred hhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cCc-EEEEecCCCC
Confidence 11 1358999964 333446677765532 224 9999999973
No 50
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.82 E-value=0.068 Score=51.69 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++|.+.||+++|+|..|.-+|..|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 468999999999999999999999764 77 789999997
No 51
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.64 E-value=0.073 Score=54.11 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=61.2
Q ss_pred CceeecCCCchhHHHHHHHHHHHHHhCC--CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 205 HLVFNDDIQGTASVVLAGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 205 ~~~FnDDiQGTa~V~LAgll~Alr~~g~--~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
+.=+|-|.. |++.+++-.+. ++++.+++++|||.||-+|+-.|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~~--------G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt-- 158 (282)
T TIGR01809 100 WKGDNTDWD--------GIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN-- 158 (282)
T ss_pred EEEecCCHH--------HHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC--
Confidence 444566654 45677766553 5789999999999999888777754 376 689999874
Q ss_pred ccCCCcCCCchhchhhcccc--CCCC---CHHHHhcccCCcEEEEccCCCCCCCHHH
Q 010990 283 IVSSRKDSLQHFKKPWAHEH--EPVN---NLLDAVKVIKPTILIGSSGVGRTFTKEV 334 (496)
Q Consensus 283 i~~~r~~~l~~~k~~~a~~~--~~~~---~L~e~v~~vkptvLIG~S~~~g~Ft~ev 334 (496)
..|.+.|. ..|.... .... .+.+++. ++|++|.++..+-.++.+.
T Consensus 159 --~~ka~~La---~~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~ 208 (282)
T TIGR01809 159 --PDKLSRLV---DLGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVD 208 (282)
T ss_pred --HHHHHHHH---HHhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHH
Confidence 22222121 1121100 0111 2333443 4899999888764444443
No 52
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.61 E-value=0.059 Score=53.79 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=80.1
Q ss_pred EEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhh-ccccCCCCCHHHHhcccC
Q 010990 239 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAVKVIK 316 (496)
Q Consensus 239 iv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~-a~~~~~~~~L~e~v~~vk 316 (496)
|.|+|| |..|.++|..|+.. |. .....++++|.+.-..+.....+.+....+ ...-...+++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~-- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD-- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--
Confidence 579999 99999999887652 41 113679999986411111111122222222 0011113567899987
Q ss_pred CcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc--CCcEEEecCC
Q 010990 317 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 378 (496)
Q Consensus 317 ptvLIG~S~~~g~--------------Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t--~G~ai~AsGs 378 (496)
+|++|=+.+.++. .-+++.+.|.++|+..+++=.|||. .....-+++++ .-.-+|++|.
T Consensus 71 aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 9988865554322 2468889999999999999999995 66777777763 2244677764
No 53
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.59 E-value=0.096 Score=53.63 Aligned_cols=125 Identities=14% Similarity=0.226 Sum_probs=77.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc--CCCCCHHHHhccc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 315 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~e~v~~v 315 (496)
||.|+|+|.+|..+|..|+. .|+ ..+|.++|++-=..++-..+|.+.. .+.... -...+. +.+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~-~~l~~- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDY-SDCKD- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCH-HHhCC-
Confidence 89999999999999998864 365 2479999985221111111121111 011100 011334 34554
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCC--cEEEecCCC
Q 010990 316 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGSP 379 (496)
Q Consensus 316 kptvLIG~S~~~g~--------------Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G--~ai~AsGsP 379 (496)
.|++|=+.+.+.. .=+++.+.|.+++..-+|+-.|||. .+...-++++++= +-+|++|.-
T Consensus 69 -aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~---d~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 -ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV---DVITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred -CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChH---HHHHHHHHHHhCcCHHHEeeccch
Confidence 9999987776521 1257788888999999999999996 5666666665321 347777754
No 54
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.53 E-value=0.34 Score=49.97 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=76.2
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-+|++..++-.+.+|+..+++++|-|. -|.-+|.+|.. .|. .+.+|+|+
T Consensus 137 ~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~a-------tVtv~hs~------------ 192 (285)
T PRK10792 137 LLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AGC-------TVTVCHRF------------ 192 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------eEEEEECC------------
Confidence 345678899999999999999999999999998 99999999864 243 57888764
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecC
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 351 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLS 351 (496)
..+|.+.++. +|++|-+-+.++.|+.++++ +.-+|.=..
T Consensus 193 ------------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 ------------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1347788887 99999999999999998887 456666555
No 55
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.50 E-value=0.054 Score=45.20 Aligned_cols=94 Identities=13% Similarity=0.247 Sum_probs=62.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-cCCCcccCCCcCCCchhchhhccccCCCC-CHHHHhccc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVN-NLLDAVKVI 315 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~v-D~~GLi~~~r~~~l~~~k~~~a~~~~~~~-~L~e~v~~v 315 (496)
||.|+|+|..|.++++.|+.. |. ...+|+++ +++ .+...+.++.|.. .-.. +..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGV--QATADDNEEAAQE- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTT--EEESEEHHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhcc--ccccCChHHhhcc-
Confidence 789999999999999998763 54 34677755 553 1223333333321 1113 78899996
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 353 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNP 353 (496)
+|++| ++-.+ ..-+++++.+....+..+|..++||
T Consensus 62 -advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 -ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99888 66655 4567788888667788999988886
No 56
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.45 E-value=0.073 Score=57.36 Aligned_cols=126 Identities=15% Similarity=0.267 Sum_probs=77.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCC-----CCCHHH
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLD 310 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~-----~~~L~e 310 (496)
.||+|+||||+ -...++-..+.+...++ .+.|||+|.+- ..|-+.+...-+.+.+. ..+ ..++.|
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 48999999996 44444433333223332 37899999862 22211111111222222 111 358999
Q ss_pred HhcccCCcEEEEccCCCCC----CC------------------------------HHHHHHHHccCCCceEEecCCCCCC
Q 010990 311 AVKVIKPTILIGSSGVGRT----FT------------------------------KEVIEAMASFNEKPLILALSNPTSQ 356 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~~g~----Ft------------------------------~evv~~M~~~~~rPIIFaLSNPt~~ 356 (496)
|+++ +|..|=.-.+||. -+ .++++.|.++|+.-+|+=.|||.
T Consensus 72 al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~-- 147 (419)
T cd05296 72 ALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPA-- 147 (419)
T ss_pred HhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHH--
Confidence 9988 7887755555442 11 28888999999999999999996
Q ss_pred CCCCHHHHhcccCCcEEEecC
Q 010990 357 SECTAEEAYTWSKGRAIFASG 377 (496)
Q Consensus 357 ~E~~peda~~~t~G~ai~AsG 377 (496)
-+..+-+++++. .-+|++|
T Consensus 148 -~ivt~a~~k~~~-~rviGlc 166 (419)
T cd05296 148 -GIVTEAVLRHTG-DRVIGLC 166 (419)
T ss_pred -HHHHHHHHHhcc-CCEEeeC
Confidence 466666677774 4466554
No 57
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.29 E-value=0.26 Score=46.97 Aligned_cols=119 Identities=19% Similarity=0.287 Sum_probs=73.3
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 213 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 213 QGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
.||+--++-|++ |.++..|...++|++|-|--|-|+|+.+... |. ++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----Ga-------~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----GA-------RVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----CC-------EEEEEECC------------
Confidence 467766777776 4688889999999999999999999999653 53 67777653
Q ss_pred hhchhhcc-ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHh
Q 010990 293 HFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 365 (496)
Q Consensus 293 ~~k~~~a~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~ 365 (496)
|.+.-=|. +.-+..++.|+++. +|++|-+++..++.+.|.++.|. +.-|+.-..-= .-|+.-+..-
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh~--d~Eid~~~L~ 122 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGHF--DVEIDVDALE 122 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSSS--TTSBTHHHHH
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCcC--ceeEeecccc
Confidence 22211111 11123579999986 99999999988889999999995 44455444322 2566666543
No 58
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.07 E-value=0.18 Score=52.39 Aligned_cols=124 Identities=18% Similarity=0.286 Sum_probs=77.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc-hhhcccc---CCCCCHHHH
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEH---EPVNNLLDA 311 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k-~~~a~~~---~~~~~L~e~ 311 (496)
-.||.|+|||..|-++|.+++. .|+ ..+.|+|.+-=...++ .++..+ ..+.... ...+++ ++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~--~ld~~~~~~~~~~~~~I~~~~d~-~~ 71 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGK--ALDISHSNVIAGSNSKVIGTNNY-ED 71 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHH--HHHHHhhhhccCCCeEEEECCCH-HH
Confidence 3699999999999999998754 366 2399999753222211 111111 1111111 112466 56
Q ss_pred hcccCCcEEEEccCCCCCC-------------------CHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccC--C
Q 010990 312 VKVIKPTILIGSSGVGRTF-------------------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--G 370 (496)
Q Consensus 312 v~~vkptvLIG~S~~~g~F-------------------t~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~--G 370 (496)
+++ +|++|=+.+.++.- -+++++.|.+.+..-+++--|||. ......+++.++ -
T Consensus 72 l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~---di~t~~~~~~sg~p~ 146 (321)
T PTZ00082 72 IAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL---DVMVKLLQEHSGLPK 146 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHhcCCCh
Confidence 776 99998665544321 247888888999877999999995 555556666552 1
Q ss_pred cEEEecCC
Q 010990 371 RAIFASGS 378 (496)
Q Consensus 371 ~ai~AsGs 378 (496)
+-++++|.
T Consensus 147 ~rviGlgt 154 (321)
T PTZ00082 147 NKVCGMAG 154 (321)
T ss_pred hhEEEecC
Confidence 35777773
No 59
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.00 E-value=0.17 Score=49.62 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=34.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 468899999999999999999999775 77 789999997
No 60
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.78 E-value=0.21 Score=48.93 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+|++.||+++|+|..|..||..|+.+ |+ ++|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 458899999999999999999999764 77 789999997
No 61
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.75 E-value=0.27 Score=50.98 Aligned_cols=126 Identities=21% Similarity=0.345 Sum_probs=78.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc---CCCCCHHHH
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 311 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~e~ 311 (496)
+..||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+.... ...++++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 34599999999999999988764 364 24999997521111110012111 1111110 1124665 6
Q ss_pred hcccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 010990 312 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 375 (496)
Q Consensus 312 v~~vkptvLIG~S~~~g~--------------Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~--G~ai~A 375 (496)
+++ +|++|=+.+.+.. +=+++.+.|.++|+.-+++=.|||. ......+.++++ =.-+++
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 776 8988866655431 2348899999999999888889996 555666666652 134777
Q ss_pred cCC
Q 010990 376 SGS 378 (496)
Q Consensus 376 sGs 378 (496)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 774
No 62
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.74 E-value=0.091 Score=51.00 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=65.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC--CCCCHH
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLL 309 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~--~~~~L~ 309 (496)
.+|++.||+|+|+|..|.+||..|+.+ |+ +++.++|.+ .|..+ +|+... .+..+.. ....+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D-~ve~s---NL~Rq~-~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFD-VVEPS---NLNRQQ-YKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCC-EEccc---cccccc-CChhhCCCHHHHHHH
Confidence 458899999999999999999999764 76 789999998 23322 344321 1111110 112466
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE-ecCCCCCCCCC
Q 010990 310 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPTSQSEC 359 (496)
Q Consensus 310 e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF-aLSNPt~~~E~ 359 (496)
+.++.+.|++-|-. ...-++++-+...-+ +--+|+ +.-||..+.+.
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHH
Confidence 67777778755433 223466666555432 233444 55666644443
No 63
>PRK05086 malate dehydrogenase; Provisional
Probab=93.68 E-value=0.4 Score=49.64 Aligned_cols=104 Identities=25% Similarity=0.339 Sum_probs=66.5
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC--CCCCHHHHhc
Q 010990 237 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVK 313 (496)
Q Consensus 237 ~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~--~~~~L~e~v~ 313 (496)
.||+|+|| |..|..+|.+|... .+. -..+.++|++-. ..+..-++.+. +...... ...++.++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~--~~~~~i~~~~~~d~~~~l~ 68 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI--PTAVKIKGFSGEDPTPALE 68 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC--CCCceEEEeCCCCHHHHcC
Confidence 38999999 99999999887432 122 146889997522 11110012110 1000000 1246778888
Q ss_pred ccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCC
Q 010990 314 VIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 314 ~vkptvLIG~S~~~g~--------------Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
+ .|+.|=+.+.+.- ..+++++.|.+++.+.+|+-.|||.
T Consensus 69 ~--~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 69 G--ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred C--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 7 9988866665321 4568999999999999999999996
No 64
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=93.67 E-value=0.15 Score=55.08 Aligned_cols=125 Identities=18% Similarity=0.266 Sum_probs=77.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhc-CCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-CC-----CCCHH
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-----VNNLL 309 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~-G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~~-----~~~L~ 309 (496)
.||+|+||||+ -.-.|+..+.+.. .++ .+.|||+|-+ ..|.+.+...-+.+++.. .+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999995 4444445444322 343 3789999975 444221222222333221 11 25899
Q ss_pred HHhcccCCcEEEEccCCC--------------------------CCCC--------HHHHHHHHccCCCceEEecCCCCC
Q 010990 310 DAVKVIKPTILIGSSGVG--------------------------RTFT--------KEVIEAMASFNEKPLILALSNPTS 355 (496)
Q Consensus 310 e~v~~vkptvLIG~S~~~--------------------------g~Ft--------~evv~~M~~~~~rPIIFaLSNPt~ 355 (496)
+|+++ +|..|-.-.+| |.|. .++++.|.++|+..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99998 88777443333 3222 38899999999999999999996
Q ss_pred CCCCCHHHHhcccCCcEEEecC
Q 010990 356 QSECTAEEAYTWSKGRAIFASG 377 (496)
Q Consensus 356 ~~E~~peda~~~t~G~ai~AsG 377 (496)
-+.-+-+++++...-++++|
T Consensus 147 --di~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 --GEVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred --HHHHHHHHHhCCCCcEEEEC
Confidence 44555555666444456655
No 65
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.66 E-value=0.24 Score=51.12 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 010990 216 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 294 (496)
Q Consensus 216 a~V~LAgll~Alr~~g~~l~d~riv~~GAG-~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 294 (496)
.-+|-+|++.=|+-.+.+++..+++++|.| ..|.-+|.+|.. .|. .+.+|+++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC--------------
Confidence 457888899999999999999999999999 999999999964 253 46667542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 295 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 295 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|...+.++.+++++|+
T Consensus 191 ----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 ----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred ----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 0236678887 99999999999999999885
No 66
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.52 E-value=0.16 Score=52.64 Aligned_cols=126 Identities=15% Similarity=0.267 Sum_probs=78.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-CCCCCHHHHhccc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 315 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~e~v~~v 315 (496)
.||.|.|||..|..+|-+|+. .|+. ..+.++|.+-=..++..-+|.+.. +|-+.. -..++. +.+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~~-----~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGIA-----DELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 499999999999999998764 3662 579999974211111111122221 221111 011344 45776
Q ss_pred CCcEEEEccCCCCC--CC------------HHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc--CCcEEEecCCC
Q 010990 316 KPTILIGSSGVGRT--FT------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 379 (496)
Q Consensus 316 kptvLIG~S~~~g~--Ft------------~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t--~G~ai~AsGsP 379 (496)
+|++|=+.+.+.. -| ++++..+.+++...+|+-.|||. ++...-+++++ +-+-+|++|.-
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCch
Confidence 9999866665421 11 46788888899999999999995 66666777765 22346676643
No 67
>PRK08223 hypothetical protein; Validated
Probab=93.48 E-value=0.14 Score=52.82 Aligned_cols=127 Identities=14% Similarity=0.026 Sum_probs=76.4
Q ss_pred HHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcE
Q 010990 195 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 274 (496)
Q Consensus 195 f~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i 274 (496)
|..-++|..++..|..+-| .+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 5566677665554433322 568899999999999999999999876 87 789
Q ss_pred EEEcCCCcccCCC-c-------CCCchhchhhccc----c----------CC--CCCHHHHhcccCCcEEEEccCCCCCC
Q 010990 275 CLVDSKGLIVSSR-K-------DSLQHFKKPWAHE----H----------EP--VNNLLDAVKVIKPTILIGSSGVGRTF 330 (496)
Q Consensus 275 ~~vD~~GLi~~~r-~-------~~l~~~k~~~a~~----~----------~~--~~~L~e~v~~vkptvLIG~S~~~g~F 330 (496)
.++|.+=+ ..+. . +++-..|.+-|++ . .. ..++.+.+++ .|++|=.+.....=
T Consensus 55 ~lvD~D~V-e~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~D~~~~~ 131 (287)
T PRK08223 55 TIADFDVF-ELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGLDFFEFD 131 (287)
T ss_pred EEEeCCCc-chhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECCCCCcHH
Confidence 99998732 2211 0 1121222222211 0 01 1356666765 78877333211001
Q ss_pred CHHHHHHHHccCCCceEEecCCC
Q 010990 331 TKEVIEAMASFNEKPLILALSNP 353 (496)
Q Consensus 331 t~evv~~M~~~~~rPIIFaLSNP 353 (496)
++-.+...|.....|.|.+-+.-
T Consensus 132 ~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 132 ARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEeccC
Confidence 56677777777788888875444
No 68
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.41 E-value=0.18 Score=51.31 Aligned_cols=118 Identities=19% Similarity=0.337 Sum_probs=73.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-----c----CCCCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-----H----EPVNN 307 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-----~----~~~~~ 307 (496)
.||.|+|||..|.++|..++. .|+ + .++++|.+ +++ +......+.+. . ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~----~--ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL----G--DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC----e--EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 489999999999999998764 254 1 69999983 111 11111111110 0 01235
Q ss_pred HHHHhcccCCcEEEEccCCC---C-----------CCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCC---
Q 010990 308 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--- 370 (496)
Q Consensus 308 L~e~v~~vkptvLIG~S~~~---g-----------~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G--- 370 (496)
. +++++ +|++|=+.+.+ | ..-+++++.|.+.+...+++--|||. .....-+++.+ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCc
Confidence 5 55666 89888333222 2 12346778888899999888889995 55555666655 4
Q ss_pred cEEEecCCC
Q 010990 371 RAIFASGSP 379 (496)
Q Consensus 371 ~ai~AsGsP 379 (496)
+-+|++|.-
T Consensus 138 ~~viG~gt~ 146 (307)
T PRK06223 138 NRVIGMAGV 146 (307)
T ss_pred ccEEEeCCC
Confidence 568888854
No 69
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.36 E-value=0.42 Score=53.00 Aligned_cols=213 Identities=16% Similarity=0.205 Sum_probs=109.2
Q ss_pred CCceEEEEecCcccccCCCCCC--ccccchhhhHHHHhhhcCCCCCceeeEEeecCCCc----hhcccCcccccccccCC
Q 010990 85 RSIQVIVVTDGERILGLGDLGC--QGMGIPVGKLALYTALGGIRPSACLPITVDVGTNN----EQLLKDEFYIGLRQRRA 158 (496)
Q Consensus 85 ~~v~viVVTDG~rILGLGDlG~--~gm~I~~GKl~Ly~~~gGi~P~~~lPi~LDvgTnn----~~Ll~DplYlG~r~~R~ 158 (496)
.+.+|+|=++.+.-.|+-|-=- .|..|.-. ..+| . - .|.|-|..-. +.|.++-.++|+-|+-.
T Consensus 28 ~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~-~~~~-~---a------diIlkV~~P~~~e~~~l~~g~tli~~l~p~~ 96 (511)
T TIGR00561 28 LGFDVLVETGAGAKASFADRAFESAGAGIVDG-TLFW-Q---S------DIILKVNAPSDAEIAELPAGKALVSFIWPAQ 96 (511)
T ss_pred CCCEEEEECCCCcCCCcCHHHHHHcCCEEecc-cchh-c---C------CEEEEeCCCCHHHHHhcCCCCEEEEEcCccC
Confidence 4578888777665566666211 12233211 1222 1 1 3555554322 45667778888888643
Q ss_pred ChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCcee--ecCCCchhHHHHHHHHHHHHHhC-----
Q 010990 159 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVF--NDDIQGTASVVLAGVVAALKLIG----- 231 (496)
Q Consensus 159 ~g~~y~~~vdefv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~F--nDDiQGTa~V~LAgll~Alr~~g----- 231 (496)
. .|.++++.++ .-.+|-+|.+-.- +|- .+..+| +..|-|-.+|..|+=.-.-...|
T Consensus 97 n--------~~ll~~l~~k--~it~ia~E~vpri------sra-q~~d~lssma~iAGy~Avi~Aa~~lgr~~~g~~taa 159 (511)
T TIGR00561 97 N--------PELMEKLAAK--NITVLAMDAVPRI------SRA-QKLDALSSMANIAGYRAIIEAAHEFGRFFTGQITAA 159 (511)
T ss_pred C--------HHHHHHHHHc--CCEEEEeeccccc------ccC-CccCcchhhHHHHHHHHHHHHHHHhhhhcCCceecC
Confidence 2 2333333332 2355777755310 111 122222 24456666665554333222222
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch------------hchhhc
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------------FKKPWA 299 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~------------~k~~~a 299 (496)
......|++|+|+|.+|+..+..+... |. +++++|.+.-..+ +.+.+.. ...-||
T Consensus 160 g~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rle-~a~~lGa~~v~v~~~e~g~~~~gYa 226 (511)
T TIGR00561 160 GKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVKE-QVQSMGAEFLELDFKEEGGSGDGYA 226 (511)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHH-HHHHcCCeEEeccccccccccccce
Confidence 134568999999999999987777542 53 3777787643110 0000100 001122
Q ss_pred cccCCC------CCHHHHhcccCCcEEEEccCCCC-----CCCHHHHHHHHc
Q 010990 300 HEHEPV------NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMAS 340 (496)
Q Consensus 300 ~~~~~~------~~L~e~v~~vkptvLIG~S~~~g-----~Ft~evv~~M~~ 340 (496)
+...+. .-+.+.++. .|++|++.-.+| +.|+++++.|..
T Consensus 227 ~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp 276 (511)
T TIGR00561 227 KVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA 276 (511)
T ss_pred eecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC
Confidence 211000 114555655 999999983333 589999999973
No 70
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.24 E-value=0.21 Score=52.70 Aligned_cols=103 Identities=21% Similarity=0.260 Sum_probs=61.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCc--------CCCchhchhhccc--
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 301 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~--------~~l~~~k~~~a~~-- 301 (496)
.+|++.||+++|+|..|..+|..|+.+ |+ ++|.++|.+ .+....- +++-..|..-+.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d-~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l 198 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD-VVDRSNLQRQILHTEDRVGQPKVDSAAQRL 198 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC-EecchhhccccccchhhCCCcHHHHHHHHH
Confidence 357888999999999999999999765 77 789999987 2221110 0111112111110
Q ss_pred ---cC---------CC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEec
Q 010990 302 ---HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 350 (496)
Q Consensus 302 ---~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaL 350 (496)
.+ .. .++.+.++. .|++|-++.... ++..+..++.....|.|++-
T Consensus 199 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~~--~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 199 AALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNFP--TRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred HHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCHH--HHHHHHHHHHHcCCCEEEEE
Confidence 00 00 134445554 777776665321 45567777777778887763
No 71
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.22 E-value=0.22 Score=50.23 Aligned_cols=123 Identities=21% Similarity=0.264 Sum_probs=65.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhch-------hhccc--------
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-------PWAHE-------- 301 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~-------~~a~~-------- 301 (496)
+||.|+|+|..|.++|..+... |. +++++|++- . .++..+. +.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~~----~---~~~~~~~~~~~~~~~~~~~g~~~~~~~ 62 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----GF-------QTTLVDIKQ----E---QLESAQQEIASIFEQGVARGKLTEAAR 62 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----CC-------cEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 4899999999999999998753 53 588888751 1 1111110 00000
Q ss_pred ------cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEe
Q 010990 302 ------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA 375 (496)
Q Consensus 302 ------~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~A 375 (496)
.....++.+++++ +|++|=+-...-...+++++.+.+..+...|++ ||.++ .+|++..+...-..=+.
T Consensus 63 ~~~~~~i~~~~~~~~~~~~--aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~-~~tSt---~~~~~l~~~~~~~~r~~ 136 (288)
T PRK09260 63 QAALARLSYSLDLKAAVAD--ADLVIEAVPEKLELKKAVFETADAHAPAECYIA-TNTST---MSPTEIASFTKRPERVI 136 (288)
T ss_pred HHHHhCeEEeCcHHHhhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEE-EcCCC---CCHHHHHhhcCCcccEE
Confidence 0112567788876 888884422211123455566665555444443 44332 44444444332222233
Q ss_pred cCCCCCCcc
Q 010990 376 SGSPFDPFE 384 (496)
Q Consensus 376 sGsPf~pv~ 384 (496)
...+|.|+.
T Consensus 137 g~h~~~Pv~ 145 (288)
T PRK09260 137 AMHFFNPVH 145 (288)
T ss_pred EEecCCCcc
Confidence 445666663
No 72
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.21 E-value=2.8 Score=45.37 Aligned_cols=186 Identities=24% Similarity=0.246 Sum_probs=124.7
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCc--cHHHHHHHHcCC-----Ccee----------ecCCCchhHHHH
Q 010990 158 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH--NAFELLAKYGTT-----HLVF----------NDDIQGTASVVL 220 (496)
Q Consensus 158 ~~g~~y~~~vdefv~av~~~fGp~~li~~EDf~~~--~af~iL~~yr~~-----~~~F----------nDDiQGTa~V~L 220 (496)
.+..|-..|...|++++.+.-||+.-|-=+|++.. .=--+.+.|+.- .++| .+----||-=+.
T Consensus 112 ~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~ 191 (411)
T COG0334 112 LSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVF 191 (411)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceehH
Confidence 56677788899999999999999999999999862 222246666531 2222 122223432222
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 300 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~ 300 (496)
-+.-.|++..|.+|+..||.|-|-|..|.-.|+.+.+. |. |=+-+=|++|.|++. +.++..+....+
T Consensus 192 ~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~--~Gld~~~l~~~~ 258 (411)
T COG0334 192 YAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDE--DGLDVEALLELK 258 (411)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecC--CCCCHHHHHHHh
Confidence 33338888888889999999999999999998888653 64 567778999988876 346543332211
Q ss_pred c----------cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHHHHhc
Q 010990 301 E----------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 366 (496)
Q Consensus 301 ~----------~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN-Pt~~~E~~peda~~ 366 (496)
+ .+...+ |.+=.+..|||+=+.. .+..|++-.+...+. +|.=-+| ||+ ..+++.+.
T Consensus 259 ~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~ak----~V~EgAN~P~t---~eA~~i~~ 325 (411)
T COG0334 259 ERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKAK----IVVEGANGPTT---PEADEILL 325 (411)
T ss_pred hhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhhc----EEEeccCCCCC---HHHHHHHH
Confidence 1 011122 3344467999997766 568999988888532 8888888 873 34455554
No 73
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.20 E-value=0.19 Score=51.51 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.|++.+++-.+.++++.+++++|||-|+-+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4567788877888899999999999998887776654 366 689999984
No 74
>PRK08328 hypothetical protein; Provisional
Probab=93.17 E-value=0.051 Score=53.70 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=71.6
Q ss_pred HHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE
Q 010990 198 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 277 (496)
Q Consensus 198 L~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~v 277 (496)
++||..++..|..+. -.+|++.||+++|+|..|..+|..|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578876666655421 2457888999999999999999999875 77 789999
Q ss_pred cCCCcccCCCcCCCchhchhhcc-ccCCC----CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE-ecC
Q 010990 278 DSKGLIVSSRKDSLQHFKKPWAH-EHEPV----NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALS 351 (496)
Q Consensus 278 D~~GLi~~~r~~~l~~~k~~~a~-~~~~~----~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF-aLS 351 (496)
|.+ .+.. .+|+.+ .+.. +.-.. ....+.++...|++-|=... +-++++-+...-+ +.-+|+ +.-
T Consensus 58 D~D-~ve~---sNL~Rq--~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~~D~Vid~~d 127 (231)
T PRK08328 58 DEQ-TPEL---SNLNRQ--ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVLK--GVDVIVDCLD 127 (231)
T ss_pred cCC-ccCh---hhhccc--cccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--cCCEEEECCC
Confidence 986 2221 224321 1111 11111 12344567778888776533 3466665544332 445666 455
Q ss_pred CCC
Q 010990 352 NPT 354 (496)
Q Consensus 352 NPt 354 (496)
|+.
T Consensus 128 ~~~ 130 (231)
T PRK08328 128 NFE 130 (231)
T ss_pred CHH
Confidence 765
No 75
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.13 E-value=1.4 Score=45.92 Aligned_cols=155 Identities=10% Similarity=0.164 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceeecCC---CchhHHHHHHHHHHHHH---------------
Q 010990 168 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDI---QGTASVVLAGVVAALKL--------------- 229 (496)
Q Consensus 168 defv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~FnDDi---QGTa~V~LAgll~Alr~--------------- 229 (496)
.|+++++.+. |- -+|+.-=.+-.| ..+-.--+..+.+.|--- +.+|=-+++.+|+.+|-
T Consensus 59 ~~~l~~~~~~-~l-k~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNEL-GI-KQIAQRSAGFDT-YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhhc-Cc-eEEEEcccccch-hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 4666555431 11 125544444333 233222246788777422 44555678888876652
Q ss_pred ----hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCC
Q 010990 230 ----IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV 305 (496)
Q Consensus 230 ----~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~ 305 (496)
.+..|.+.+|.|+|.|..|..+|+.+... .|+ ++|.+|+.. . ... ..++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---ccc
Confidence 13458899999999999999999998533 254 688888742 1 001 1111 123
Q ss_pred CCHHHHhcccCCcEEEEccC----CCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010990 306 NNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 306 ~~L~e~v~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
.+|.|+++. .|+++=.-- ..+.++++.++.|. +..++.=+|.=.
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sRG~ 239 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCARGS 239 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCCCc
Confidence 579999987 898885421 12467777788885 667888777743
No 76
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.11 E-value=0.12 Score=54.18 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=34.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 468899999999999999999999875 77 7899999983
No 77
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.09 E-value=0.52 Score=46.27 Aligned_cols=102 Identities=21% Similarity=0.311 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhC---------CCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q 010990 218 VVLAGVVAALKLIG---------GTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR 287 (496)
Q Consensus 218 V~LAgll~Alr~~g---------~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r 287 (496)
+|-.|++.=|+-.+ .+++.++++++|-+. -|.-+|.||.. +| ..+++||++|.....+
T Consensus 35 CTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~~ 102 (197)
T cd01079 35 CTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFTR 102 (197)
T ss_pred CCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCccccccc
Confidence 56666666666554 489999999999875 57777777754 35 3589999999888665
Q ss_pred cCCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCC-CCHHHHH
Q 010990 288 KDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 336 (496)
Q Consensus 288 ~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~-Ft~evv~ 336 (496)
...+.+.+.+. .....+|.|.++. +|++|-.-+.++. ++.|+++
T Consensus 103 ~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 103 GESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred ccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 43221111100 0111348888987 9999999999987 7998887
No 78
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.04 E-value=0.26 Score=50.20 Aligned_cols=58 Identities=29% Similarity=0.309 Sum_probs=42.9
Q ss_pred CCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 204 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 204 ~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++.=+|.| -.|++.+++..+..+++.+++|+|||-+|-+||..|.. .|. ++|+++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45566777 44577788877777888999999999777777666643 365 679999874
No 79
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.02 E-value=0.71 Score=51.18 Aligned_cols=229 Identities=17% Similarity=0.224 Sum_probs=117.9
Q ss_pred CCceEEEEecCcccccCCCCCC--ccccchhhhHHHHhhhcCCCCCceeeEEeecCCCc----hhcccCcccccccccCC
Q 010990 85 RSIQVIVVTDGERILGLGDLGC--QGMGIPVGKLALYTALGGIRPSACLPITVDVGTNN----EQLLKDEFYIGLRQRRA 158 (496)
Q Consensus 85 ~~v~viVVTDG~rILGLGDlG~--~gm~I~~GKl~Ly~~~gGi~P~~~lPi~LDvgTnn----~~Ll~DplYlG~r~~R~ 158 (496)
.+.+|+|=++.+--.|+-|--- .|..|.-.+ .+| . . .|.|-|..-. +.|.++-.++|+-|+--
T Consensus 29 ~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~-~v~-~---~------diilkV~~P~~~e~~~l~~g~~li~~l~p~~ 97 (509)
T PRK09424 29 LGFEVVVESGAGQLASFDDAAYREAGAEIVDGA-AVW-Q---S------DIILKVNAPSDDEIALLREGATLVSFIWPAQ 97 (509)
T ss_pred CCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCc-ccc-c---C------CEEEEeCCCCHHHHHhcCCCCEEEEEeCccc
Confidence 3678888777665566666211 133332222 233 1 2 2555554332 35666778888888733
Q ss_pred ChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCC-ccHHHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhC-----C
Q 010990 159 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN-HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIG-----G 232 (496)
Q Consensus 159 ~g~~y~~~vdefv~av~~~fGp~~li~~EDf~~-~~af~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g-----~ 232 (496)
. .|.++++.++ .=.+|-+|.+-. .+|. +.+...-.-.|-|=-+|..|+-.-.--..| .
T Consensus 98 ~--------~~l~~~l~~~--~it~ia~e~vpr~sraq------~~d~lssma~IAGy~Av~~aa~~~~~~~~g~~taaG 161 (509)
T PRK09424 98 N--------PELLEKLAAR--GVTVLAMDAVPRISRAQ------SLDALSSMANIAGYRAVIEAAHEFGRFFTGQITAAG 161 (509)
T ss_pred C--------HHHHHHHHHc--CCEEEEeecccccccCC------CcccccchhhhhHHHHHHHHHHHhcccCCCceeccC
Confidence 2 2333343332 235577777652 1111 012222244556655554443322111111 1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcC---CC-------c-----hhchh
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL-------Q-----HFKKP 297 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~---~l-------~-----~~k~~ 297 (496)
.....|++|+|||.+|++.+..... .|. +++.+|.+- .|.+ .+ + .....
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~-----lGA-------~V~a~D~~~----~rle~aeslGA~~v~i~~~e~~~~~~g 225 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS-----LGA-------IVRAFDTRP----EVAEQVESMGAEFLELDFEEEGGSGDG 225 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEeCCH----HHHHHHHHcCCeEEEeccccccccccc
Confidence 3458899999999999888766643 252 477777641 1100 00 0 01112
Q ss_pred hccccCCC------CCHHHHhcccCCcEEEEccCCCC-----CCCHHHHHHHHccCCCceEEecCCCC-CCCCCCH
Q 010990 298 WAHEHEPV------NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT-SQSECTA 361 (496)
Q Consensus 298 ~a~~~~~~------~~L~e~v~~vkptvLIG~S~~~g-----~Ft~evv~~M~~~~~rPIIFaLSNPt-~~~E~~p 361 (496)
|++...+. ..+.+.++ ++|++|.+++.+| +++++.++.|. +.-.|.=++-+. ..+|.+.
T Consensus 226 ya~~~s~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 226 YAKVMSEEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred hhhhcchhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCccccc
Confidence 23221110 01122222 4999999999866 67999999996 455666677753 3345553
No 80
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.97 E-value=0.87 Score=42.13 Aligned_cols=82 Identities=22% Similarity=0.223 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc
Q 010990 217 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 295 (496)
Q Consensus 217 ~V~LAgll~Alr~~g~~l~d~riv~~GAG~A-g~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k 295 (496)
-++..|++.-++..|.+++.++|+++|.+.. |.-+|.+|. + +|. .+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~----~-~ga-------tV~~~~~~t-------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQ----R-DGA-------TVYSCDWKT-------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHH----H-CCC-------EEEEeCCCC--------------
Confidence 3678899999999999999999999998653 444444443 3 353 577777641
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 296 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 296 ~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
.+|.+.++. +|++|-..+.++.|+.|+++
T Consensus 63 ----------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 ----------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred ----------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 257788987 99999999999999999987
No 81
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.72 E-value=0.83 Score=48.84 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=82.9
Q ss_pred CCCceeecCC---CchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 010990 203 TTHLVFNDDI---QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 279 (496)
Q Consensus 203 ~~~~~FnDDi---QGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~ 279 (496)
..|.+.|--- +..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 80 AGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred CCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 4555555432 2234457889999999899999999999999999999999998653 65 5788886
Q ss_pred CCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEE-cc-------CCCCCCCHHHHHHHHccCCCceEEecC
Q 010990 280 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG-SS-------GVGRTFTKEVIEAMASFNEKPLILALS 351 (496)
Q Consensus 280 ~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG-~S-------~~~g~Ft~evv~~M~~~~~rPIIFaLS 351 (496)
..- .. + ......+|.|+++. .|+++= +. ...+.|+++.+..|. +..++.=.|
T Consensus 148 ~~~---~~-~-----------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~a 207 (381)
T PRK00257 148 PRQ---EA-E-----------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINAS 207 (381)
T ss_pred ccc---cc-c-----------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECC
Confidence 310 00 0 00123578898886 887761 11 123689999999996 677888777
Q ss_pred CC
Q 010990 352 NP 353 (496)
Q Consensus 352 NP 353 (496)
+-
T Consensus 208 RG 209 (381)
T PRK00257 208 RG 209 (381)
T ss_pred CC
Confidence 64
No 82
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.58 E-value=0.32 Score=48.62 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=34.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 468899999999999999999999875 76 789999997
No 83
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.51 E-value=0.38 Score=45.56 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999997
No 84
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.45 E-value=5.3 Score=40.38 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5899999999999999998653 64 58889875
No 85
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.45 E-value=0.27 Score=50.30 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 222 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 222 gll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
|++.+|+-.+..+++.+++++|||.||-+|+-.|.+ .|. ++|+++|+.
T Consensus 113 Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 113 GFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 566777654456788899999999999998887764 366 689999884
No 86
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.44 E-value=0.39 Score=47.95 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 468889999999999999999999874 77 789999997
No 87
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.41 E-value=0.16 Score=53.27 Aligned_cols=38 Identities=34% Similarity=0.534 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 468899999999999999999999764 77 789999996
No 88
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.40 E-value=0.5 Score=49.09 Aligned_cols=93 Identities=14% Similarity=0.283 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GAG-~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
-.-+|-+|++.=|+-.|.+++..+|+|+|.| ..|..+|.+|... |. .+++++++ .
T Consensus 138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----ga-------tVtv~~~~--------t---- 193 (301)
T PRK14194 138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----HC-------SVTVVHSR--------S---- 193 (301)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEECCC--------C----
Confidence 3457888899999999999999999999996 9999999999753 53 57777653 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecC
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 351 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLS 351 (496)
.++.|+++. +|++|=+-+.++.+++++++ +.-||.=+|
T Consensus 194 ------------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 ------------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred ------------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 268888887 99999988888888887743 455666665
No 89
>PRK15076 alpha-galactosidase; Provisional
Probab=92.37 E-value=0.32 Score=52.60 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=75.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch-hchhhcccc-----CCCCCHHH
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWAHEH-----EPVNNLLD 310 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~-~k~~~a~~~-----~~~~~L~e 310 (496)
.||.|+|||+.|. +..++..+....++ +...++|+|.+- +|.+.... .+.-.+... ...+++.+
T Consensus 2 ~KIaIIGaGsvg~--~~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVF--TKNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHh--HHHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 5899999999853 33343333322234 235799999752 22110000 011111101 11357888
Q ss_pred HhcccCCcEEEEccCCCCC-------------------------------------CCHHHHHHHHccCCCceEEecCCC
Q 010990 311 AVKVIKPTILIGSSGVGRT-------------------------------------FTKEVIEAMASFNEKPLILALSNP 353 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~~g~-------------------------------------Ft~evv~~M~~~~~rPIIFaLSNP 353 (496)
++++ +|++|=..+++|. .=.++++.|.++|+..+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8887 8887755555421 114788888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecC-CCCC
Q 010990 354 TSQSECTAEEAYTWSKGRAIFASG-SPFD 381 (496)
Q Consensus 354 t~~~E~~peda~~~t~G~ai~AsG-sPf~ 381 (496)
. .+..+-++.+++ .-++++| +|+.
T Consensus 150 ~---divt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 150 M---AMNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred H---HHHHHHHhcCCC-CCEEEECCCHHH
Confidence 5 444455556643 4588888 6643
No 90
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.34 E-value=1.1 Score=49.14 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=68.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh------------chhhccc--c
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAHE--H 302 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~------------k~~~a~~--~ 302 (496)
.||.|+|+|..|.++|..++.. |. +++++|..- +..+.+... +.++... .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHP----EAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCH----HHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 3799999999999999999763 65 588888741 110001000 0001110 1
Q ss_pred CCCCCHHHHhcccCCcEEEEccCCCCC-CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcc--cCCcEEEecCCC
Q 010990 303 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGSP 379 (496)
Q Consensus 303 ~~~~~L~e~v~~vkptvLIG~S~~~g~-Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~--t~G~ai~AsGsP 379 (496)
....++.|++++ +|++| .+..... +.+++.+.+.+..+.-.|+..|--. .+ +++..+. ..|+++++ .|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123688899987 88888 5554432 4555666666555555666544322 22 3222222 24555544 58
Q ss_pred CCCcc
Q 010990 380 FDPFE 384 (496)
Q Consensus 380 f~pv~ 384 (496)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 87774
No 91
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.31 E-value=0.21 Score=46.12 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=51.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhch--hhccc---cCC---CCCHH
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 309 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~--~~a~~---~~~---~~~L~ 309 (496)
||.|+|||+.|+++|..+... | .++.|.+++.-..+ .++..+. .|... ... ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 799999999999999999763 4 46777777531111 1111111 11110 111 26899
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHccC
Q 010990 310 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 342 (496)
Q Consensus 310 e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~ 342 (496)
+++++ +|++| +..+. -+-+++++.+..+-
T Consensus 65 ~a~~~--ad~Ii-iavPs-~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAVPS-QAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S-G-GGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecccH-HHHHHHHHHHhhcc
Confidence 99987 78766 33322 45689999998744
No 92
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.25 E-value=0.51 Score=48.72 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=68.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~A-g~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-.|++.=|+-.+.+++..+++++|.|.- |.-+|.+|.. .|. .+.+|+++
T Consensus 136 ~~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~------------ 191 (285)
T PRK14189 136 LFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK------------ 191 (285)
T ss_pred CCcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC------------
Confidence 3456788899999999999999999999999998 9999999864 253 46666542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-..+.++.|+.++++
T Consensus 192 ------------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ------------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ------------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347778887 99999999999999987776
No 93
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.22 E-value=0.093 Score=48.05 Aligned_cols=115 Identities=21% Similarity=0.364 Sum_probs=70.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-CcccCCCcCCCchhchhhccccCCCCCHHHHhcc
Q 010990 237 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 314 (496)
Q Consensus 237 ~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~-GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 314 (496)
.||.|+|| |.-|..+|-+|+.. |+. +++.++|.+ .. .++..-++.+..-..-++..-..+..+.+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l~-----~ei~L~D~~~~~-~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GLA-----DEIVLIDINEDK-AEGEALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TTS-----SEEEEEESSHHH-HHHHHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CCC-----CceEEeccCccc-ceeeehhhhhhhhhccccccccccccccccc
Confidence 38999999 99999999988763 663 569999997 21 1111101221111110111111355677776
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcc
Q 010990 315 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 367 (496)
Q Consensus 315 vkptvLIG~S~~~---g~-----------Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~ 367 (496)
+|++|=+.+.+ |- +-+++.+.+.++++..+++-.|||. ....+-+++.
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv---d~~t~~~~~~ 131 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV---DVMTYVAQKY 131 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH---HHHHHHHHHH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH---HHHHHHHHHh
Confidence 99998555543 11 2246777888999999999999995 4555555443
No 94
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.10 E-value=0.25 Score=50.42 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999998763 64 58888875
No 95
>PLN02928 oxidoreductase family protein
Probab=91.88 E-value=1.3 Score=46.57 Aligned_cols=123 Identities=16% Similarity=0.206 Sum_probs=79.3
Q ss_pred CchhHHHHHHHHHHHHH----------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEE
Q 010990 213 QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 276 (496)
Q Consensus 213 QGTa~V~LAgll~Alr~----------------~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~ 276 (496)
+.+|--+++.+|+.+|- .+..|.+.++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566677777777663 24568999999999999999999998643 65 5888
Q ss_pred EcCCCcccCCCcCCC--c-hhchhhccccCCCCCHHHHhcccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCceEEe
Q 010990 277 VDSKGLIVSSRKDSL--Q-HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILA 349 (496)
Q Consensus 277 vD~~GLi~~~r~~~l--~-~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evv~~M~~~~~rPIIFa 349 (496)
+|+.. .......+ + ..-..+........+|.|+++. .|+++-.- ...+.|+++.+..|. +..++.=
T Consensus 188 ~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lIN 260 (347)
T PLN02928 188 TRRSW--TSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLVN 260 (347)
T ss_pred ECCCC--ChhhhhhhccccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEEE
Confidence 88752 01000000 0 0000111111134689999987 99998642 224689999999996 5678887
Q ss_pred cCCCC
Q 010990 350 LSNPT 354 (496)
Q Consensus 350 LSNPt 354 (496)
.|+-.
T Consensus 261 vaRG~ 265 (347)
T PLN02928 261 IARGG 265 (347)
T ss_pred CCCcc
Confidence 77643
No 96
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.88 E-value=0.64 Score=48.03 Aligned_cols=85 Identities=18% Similarity=0.309 Sum_probs=69.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-.|++..++-.+.+|+..+++++|.|. -|.-+|.+|.. .|. .+.+|+++
T Consensus 142 ~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVtv~hs~------------ 197 (287)
T PRK14176 142 GLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RNA-------TVSVCHVF------------ 197 (287)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------EEEEEecc------------
Confidence 345678999999999999999999999999998 89999999864 243 47777753
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
.++|.+.+++ +|++|-..+.++.+++++++
T Consensus 198 ------------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 ------------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1247777877 99999999999999999776
No 97
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.81 E-value=1 Score=47.08 Aligned_cols=106 Identities=22% Similarity=0.270 Sum_probs=68.0
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc--cCCCCCHHH
Q 010990 234 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLD 310 (496)
Q Consensus 234 l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~--~~~~~~L~e 310 (496)
++-.||+|.|| |.-|..+|..|+. .|+ ...+.++|.+ . .++..-+|.+... ...- ....++..+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~-~~g~a~Dl~~~~~-~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-G-APGVAADLSHIDT-PAKVTGYADGELWEK 72 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-C-CcccccchhhcCc-CceEEEecCCCchHH
Confidence 34459999999 9999999987752 244 2679999983 2 1111111222111 1111 111133468
Q ss_pred HhcccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCC
Q 010990 311 AVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~~g~--------------Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
++++ .|+.|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 73 ~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 73 ALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 8887 9988755554322 3468899999999999999999997
No 98
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.80 E-value=0.46 Score=50.45 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=66.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCc--------CCCchhchhhccc--
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 301 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~--------~~l~~~k~~~a~~-- 301 (496)
++|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+= |..+.- +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~-ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDT-VDVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCE-EccccccccccCChhHCCCHHHHHHHHHH
Confidence 568899999999999999999999875 76 7899999983 222210 0111122222111
Q ss_pred ---cCC---------C--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEe
Q 010990 302 ---HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 349 (496)
Q Consensus 302 ---~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFa 349 (496)
.+. . .++.+.+++ .|++|.++... =++-.+..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 011 1 245566665 88888776632 25667778887778898886
No 99
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.72 E-value=1.2 Score=47.73 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=82.7
Q ss_pred CCCceeecC---CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 010990 203 TTHLVFNDD---IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 279 (496)
Q Consensus 203 ~~~~~FnDD---iQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~ 279 (496)
..|.+.|-- -+..|=-+++.+++..|-.|..|.+.++.|+|.|..|-.+|+.+... |+ ++..+|+
T Consensus 80 ~gI~v~napg~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp 147 (378)
T PRK15438 80 AGIGFSAAPGCNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDP 147 (378)
T ss_pred CCCEEEECCCcCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 355555531 23455567888999888888999999999999999999999999643 65 5778885
Q ss_pred CCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEE---ccC-----CCCCCCHHHHHHHHccCCCceEEecC
Q 010990 280 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG---SSG-----VGRTFTKEVIEAMASFNEKPLILALS 351 (496)
Q Consensus 280 ~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG---~S~-----~~g~Ft~evv~~M~~~~~rPIIFaLS 351 (496)
. +.+ .. ......+|.|+++. .|+++= +.. .-+.|+++.++.|. +..|+.=.|
T Consensus 148 ~------~~~--~~-------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~a 207 (378)
T PRK15438 148 P------RAD--RG-------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINAC 207 (378)
T ss_pred c------ccc--cc-------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECC
Confidence 3 111 00 00123579999876 898871 111 23689999999996 677888777
Q ss_pred C
Q 010990 352 N 352 (496)
Q Consensus 352 N 352 (496)
+
T Consensus 208 R 208 (378)
T PRK15438 208 R 208 (378)
T ss_pred C
Confidence 6
No 100
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=91.70 E-value=0.44 Score=51.29 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=72.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc------CCCCCHHHH
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLLDA 311 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~------~~~~~L~e~ 311 (496)
||.|+|||+.|.+.+- +..+.....+ +..+++++|.+- ++.+.+...-+.+.... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998887653 1111110111 235799999752 22111111111121111 113678999
Q ss_pred hcccCCcEEEEccCCCC---------------CC---------------------CHHHHHHHHccCCCceEEecCCCCC
Q 010990 312 VKVIKPTILIGSSGVGR---------------TF---------------------TKEVIEAMASFNEKPLILALSNPTS 355 (496)
Q Consensus 312 v~~vkptvLIG~S~~~g---------------~F---------------------t~evv~~M~~~~~rPIIFaLSNPt~ 355 (496)
+++ +|++|=.-..++ .| -.++.+.|.++|++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 987 888775443211 11 127777787888999999999996
Q ss_pred CCCCCHHHHhcccCCcEEEecC
Q 010990 356 QSECTAEEAYTWSKGRAIFASG 377 (496)
Q Consensus 356 ~~E~~peda~~~t~G~ai~AsG 377 (496)
-+..+-+++.++ .-++.+|
T Consensus 149 --~i~t~~~~k~~~-~rviG~c 167 (423)
T cd05297 149 --AELTWALNRYTP-IKTVGLC 167 (423)
T ss_pred --HHHHHHHHHhCC-CCEEEEC
Confidence 444455556665 5577777
No 101
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.43 E-value=2.4 Score=41.90 Aligned_cols=96 Identities=11% Similarity=0.221 Sum_probs=60.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 316 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 316 (496)
.||.|+|+|..|..+|..+... |. ...+++++|++. +..+..+..| ......+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999988653 43 124678787641 1122222211 01122566777764
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCC
Q 010990 317 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 355 (496)
Q Consensus 317 ptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~ 355 (496)
+|++| ++..+ ...+++++.+.... ..+|..++|-++
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 78776 44433 45788888887554 458899999773
No 102
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.39 E-value=0.46 Score=48.04 Aligned_cols=87 Identities=23% Similarity=0.331 Sum_probs=53.5
Q ss_pred HHHHHHHHH-hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhc
Q 010990 221 AGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 299 (496)
Q Consensus 221 Agll~Alr~-~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a 299 (496)
.|++++++. .+..+++.+++|+|||.+|-+++..|.. .|. ++++++++. ..+ .......+.
T Consensus 107 ~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~~ 168 (278)
T PRK00258 107 IGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLFG 168 (278)
T ss_pred HHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHhh
Confidence 456777764 5668899999999999888888887764 365 579999885 121 112222221
Q ss_pred ccc-CCC-CCHHHHhcccCCcEEEEccCCC
Q 010990 300 HEH-EPV-NNLLDAVKVIKPTILIGSSGVG 327 (496)
Q Consensus 300 ~~~-~~~-~~L~e~v~~vkptvLIG~S~~~ 327 (496)
... -.. .++.+.+.. .|++|-++..+
T Consensus 169 ~~~~~~~~~~~~~~~~~--~DivInaTp~g 196 (278)
T PRK00258 169 ALGKAELDLELQEELAD--FDLIINATSAG 196 (278)
T ss_pred hccceeecccchhcccc--CCEEEECCcCC
Confidence 110 001 123344443 89999887655
No 103
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=91.37 E-value=1.2 Score=46.57 Aligned_cols=134 Identities=18% Similarity=0.201 Sum_probs=81.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHHhcc
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 314 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 314 (496)
||.|.|| |.-|..+|..|+. .|+-..+..-.+.|+|.+.-. .++..-+|.+...++.......++..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~-----~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIAR-----GRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHh-----ccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 9999999988764 244200000159999974221 1111112333322222111111255677877
Q ss_pred cCCcEEEEccCCCCC--CC------------HHHHHHHHcc-CCCceEEecCCCCCCCCCCHHHHhcccCC--cEEEecC
Q 010990 315 IKPTILIGSSGVGRT--FT------------KEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASG 377 (496)
Q Consensus 315 vkptvLIG~S~~~g~--Ft------------~evv~~M~~~-~~rPIIFaLSNPt~~~E~~peda~~~t~G--~ai~AsG 377 (496)
.|++|=+.+.+.. -| +++.+.|.++ ++.-||+-.||| ..+..--+++++++ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNP---vDv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNP---ANTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc---HHHHHHHHHHHcCCCCcceEEEe
Confidence 8888866555421 12 4677888888 489999999999 47777778877743 2378888
Q ss_pred CCCC
Q 010990 378 SPFD 381 (496)
Q Consensus 378 sPf~ 381 (496)
+-.+
T Consensus 151 t~LD 154 (324)
T TIGR01758 151 TRLD 154 (324)
T ss_pred eehH
Confidence 6433
No 104
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.37 E-value=0.66 Score=47.83 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=74.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc---CCCCCHHHHhc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAVK 313 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~e~v~ 313 (496)
.||.|+|+|..|.++|-.++.. |+ + ++.++|..--+.+++.-++.+ ...+.... ....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 3899999999999999988652 54 2 499999832222211000100 00000000 11256766 66
Q ss_pred ccCCcEEEEccCCC---C-C------CC----HHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccC--CcEEEecC
Q 010990 314 VIKPTILIGSSGVG---R-T------FT----KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASG 377 (496)
Q Consensus 314 ~vkptvLIG~S~~~---g-~------Ft----~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~--G~ai~AsG 377 (496)
+ .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 5 88877554432 1 1 22 35667788889999999999995 677777777742 13377777
Q ss_pred C
Q 010990 378 S 378 (496)
Q Consensus 378 s 378 (496)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
No 105
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.35 E-value=0.51 Score=50.31 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=63.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCc--------CCCchhchhhccc--
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 301 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~--------~~l~~~k~~~a~~-- 301 (496)
++|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+ .|..+.- +++-..|..-+++
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D-~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD-VVDESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC-EecCcccccccccChhcCCChHHHHHHHHH
Confidence 568899999999999999999999875 87 789999987 3332210 0111122222211
Q ss_pred ---c---------CCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEec
Q 010990 302 ---H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 350 (496)
Q Consensus 302 ---~---------~~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaL 350 (496)
. ... .++.+.++. .|++|-++... =++-.+..++..+..|.|++-
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~~--~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDNF--ATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEE
Confidence 0 011 234455654 78888765422 245567777777778887753
No 106
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=91.33 E-value=0.86 Score=47.28 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc
Q 010990 222 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 301 (496)
Q Consensus 222 gll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~ 301 (496)
+.+++...... ...+++|+|+|..|-..+..+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 45555554422 346999999999998888877543 244 679988773 222 22222222111
Q ss_pred ----cCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHccCCCceEEecCCCC-CCCCCCHHHH
Q 010990 302 ----HEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 364 (496)
Q Consensus 302 ----~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~rPIIFaLSNPt-~~~E~~peda 364 (496)
.....++.++++. .|++|-++... ..|+.+.++. .-.|.++.--+ .+-|+.|+-.
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~l 238 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAVI 238 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHHH
Confidence 1123678899976 99999765432 3566666542 22444444322 2467777653
No 107
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.31 E-value=0.73 Score=46.81 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=26.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 4799999999999999998653 53 58888864
No 108
>PRK14851 hypothetical protein; Provisional
Probab=91.30 E-value=0.86 Score=52.21 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=79.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCc--------CCCchhchhhccc--
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 301 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~--------~~l~~~k~~~a~~-- 301 (496)
++|++.||+|+|+|..|..+|..|+.+ |+ ++|.++|-+ .|..+.- +++-..|..-+++
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D-~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l 106 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFD-QFEPVNVNRQFGARVPSFGRPKLAVMKEQA 106 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCC-EecccccccCcCcChhhCCCHHHHHHHHHH
Confidence 568999999999999999999999875 87 789999987 3332210 1122223222221
Q ss_pred --c----------CCC--CCHHHHhcccCCcEEEEccCCCCCC-CHHHHHHHHccCCCceEEecC----------CCCCC
Q 010990 302 --H----------EPV--NNLLDAVKVIKPTILIGSSGVGRTF-TKEVIEAMASFNEKPLILALS----------NPTSQ 356 (496)
Q Consensus 302 --~----------~~~--~~L~e~v~~vkptvLIG~S~~~g~F-t~evv~~M~~~~~rPIIFaLS----------NPt~~ 356 (496)
. ..+ .++.+.+++ .|++|-+.... .| ++..|...|..+..|+|++-. +|.
T Consensus 107 ~~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~-- 181 (679)
T PRK14851 107 LSINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ-- 181 (679)
T ss_pred HHhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC--
Confidence 0 111 256667775 89999555421 12 345677778888999999754 675
Q ss_pred CCCCHHHHhcccCC
Q 010990 357 SECTAEEAYTWSKG 370 (496)
Q Consensus 357 ~E~~peda~~~t~G 370 (496)
....++.|.+.++
T Consensus 182 -~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 -GMGFDDYFNIGGK 194 (679)
T ss_pred -CCCHhHhccCCCC
Confidence 5777888887666
No 109
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.26 E-value=0.75 Score=43.37 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=67.4
Q ss_pred HHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCC
Q 010990 227 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 306 (496)
Q Consensus 227 lr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~ 306 (496)
.+..+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 34567789999999999999999999999743 65 6888888522 100 1111111235
Q ss_pred CHHHHhcccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010990 307 NLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 307 ~L~e~v~~vkptvLIG~S----~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
+|.|+++. .|+++=.- ...+.|+++.++.|. +.-++.-.|+-.
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aRG~ 130 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVARGE 130 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSSGG
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccchh
Confidence 89999987 89887431 123789999999996 566777766643
No 110
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.21 E-value=0.36 Score=43.21 Aligned_cols=35 Identities=37% Similarity=0.575 Sum_probs=30.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++.||+++|+|+-|.-+|..|+.. |+ ++|.++|.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCc
Confidence 478999999999999999999876 77 789999997
No 111
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.12 E-value=0.88 Score=47.44 Aligned_cols=120 Identities=22% Similarity=0.165 Sum_probs=75.2
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc--ccCCCcCCCchhchhhccccCCCCCHHHHhcc
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 314 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL--i~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 314 (496)
||.|.|| |..|..+|..|+. .|+-.|+-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 8999999 9999999987764 36633223347999998741 11111112333222222211111456788888
Q ss_pred cCCcEEEEccCCCCC--CC------------HHHHHHHHccC-CCceEEecCCCCCCCCCCHHHHhcc
Q 010990 315 IKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTW 367 (496)
Q Consensus 315 vkptvLIG~S~~~g~--Ft------------~evv~~M~~~~-~rPIIFaLSNPt~~~E~~peda~~~ 367 (496)
.|+.|=+.+.+.. -| +++...|.+++ +.-||+-.|||- .+..--++++
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~ 139 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA---NTNALIALKN 139 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH---HHHHHHHHHH
Confidence 8888855554321 23 57788888994 999999999994 6666666665
No 112
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.81 E-value=2 Score=43.83 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=26.6
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..||.|+|+|..|.++|..|... |. ++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G~-------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----GH-------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 35899999999999999999764 53 57777764
No 113
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.80 E-value=0.39 Score=47.84 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=61.2
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-c---CCCCCH
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNL 308 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~---~~~~~L 308 (496)
+|++.||+++|+|..|.-+|+.|+.+ |+ .+|.++|.+ .|..+ +++.+ -++.. . ....-+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D-~V~~s---NlnRq--~~~~~~diG~~Kae~~ 70 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD-VVCVS---NLNRQ--IHALLSTVGKPKVEVM 70 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC-EECch---hhcch--hCcChhhCCCcHHHHH
Confidence 57889999999999999999999765 77 789999987 33322 24321 22211 1 011245
Q ss_pred HHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCC
Q 010990 309 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 356 (496)
Q Consensus 309 ~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~ 356 (496)
.+-++.+.|++=|-... .-++++-+...-...-.=||-+.-|++.+
T Consensus 71 ~~~l~~inP~~~V~~~~--~~i~~~~~~~l~~~~~D~VvdaiD~~~~k 116 (231)
T cd00755 71 AERIRDINPECEVDAVE--EFLTPDNSEDLLGGDPDFVVDAIDSIRAK 116 (231)
T ss_pred HHHHHHHCCCcEEEEee--eecCHhHHHHHhcCCCCEEEEcCCCHHHH
Confidence 66666667766554433 23555444433221122344455565543
No 114
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.78 E-value=0.7 Score=47.59 Aligned_cols=85 Identities=21% Similarity=0.367 Sum_probs=69.0
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG-~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-.|++.=++-.+.+++..+++++|-+ .-|--+|.++... | ..+..++|+
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------ 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------ 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC------------
Confidence 44567888999999999999999999999999 8888888887542 4 357777653
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|+.-+.++.+|+++++
T Consensus 186 ------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 ------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred ------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 0358888987 99999999988999999973
No 115
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.76 E-value=0.6 Score=49.16 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=65.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCc--------CCCchhchhhccc--
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 301 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~--------~~l~~~k~~~a~~-- 301 (496)
.+|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+ .|..+.- +++-..|..-|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D-~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 91 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD-TVDLSNLHRQVIHSTAGVGQPKAESAREAM 91 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC-EEcccccccCcccChhHCCChHHHHHHHHH
Confidence 458899999999999999999999764 87 789999998 3332210 0011112111110
Q ss_pred --c-C---------CC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010990 302 --H-E---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 352 (496)
Q Consensus 302 --~-~---------~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN 352 (496)
. + .. .++.+.++. .|++|-++.. .=++.++..++.....|.|++-+.
T Consensus 92 ~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d~--~~~r~~~n~~c~~~~ip~v~~~~~ 152 (355)
T PRK05597 92 LALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSDN--FDTRHLASWAAARLGIPHVWASIL 152 (355)
T ss_pred HHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEEe
Confidence 0 0 01 134455654 7888766542 235567777777778888886543
No 116
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.63 E-value=1.5 Score=45.66 Aligned_cols=131 Identities=19% Similarity=0.211 Sum_probs=78.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHHhcc
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 314 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 314 (496)
||+|.|| |.-|..+|..|+. .|+--.+....+.++|.+.-. ..+..-++.+..-++..+.....++.+++++
T Consensus 4 kV~I~GAaG~VG~~la~~L~~-----~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAK-----GDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC
Confidence 7999999 9999999998865 244110111379999985421 1111001221111111111112578888987
Q ss_pred cCCcEEEEccCCCCC--CC------------HHHHHHHHccC-CCceEEecCCCCCCCCCCHHHHhcccCC--cEEEecC
Q 010990 315 IKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASG 377 (496)
Q Consensus 315 vkptvLIG~S~~~g~--Ft------------~evv~~M~~~~-~rPIIFaLSNPt~~~E~~peda~~~t~G--~ai~AsG 377 (496)
+|++|=+.+.+.. .| +++.+.|.+++ ..-||+-.|||. .+...-+++++.| +-.|.||
T Consensus 79 --aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~g 153 (325)
T cd01336 79 --VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTAL 153 (325)
T ss_pred --CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEee
Confidence 9998866655422 23 56778888886 689999999994 6777777776532 1125555
Q ss_pred C
Q 010990 378 S 378 (496)
Q Consensus 378 s 378 (496)
+
T Consensus 154 t 154 (325)
T cd01336 154 T 154 (325)
T ss_pred e
Confidence 4
No 117
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=90.51 E-value=0.58 Score=48.17 Aligned_cols=48 Identities=38% Similarity=0.513 Sum_probs=38.4
Q ss_pred HHHHHHHHhC--CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 222 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 222 gll~Alr~~g--~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
|++.+|+-.+ ...+.++++++|||-|+.+|+-.|.+. |. ++|++++|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt 159 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT 159 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 4677777655 455679999999999999998888764 75 789999883
No 118
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=90.03 E-value=0.49 Score=45.83 Aligned_cols=105 Identities=15% Similarity=0.305 Sum_probs=66.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-CC-----CCCHHHH
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-----VNNLLDA 311 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~~-----~~~L~e~ 311 (496)
||+|+||||+- ...++...+.+.+.++ .+.|+|+|.+ ..|-+.+...-+.+++.. .+ ..++.||
T Consensus 1 KI~iIGaGS~~--~~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTY--FPLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCC--HHHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHh--hHHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 79999999984 4556666665545553 4689999986 233111122233333321 11 2689999
Q ss_pred hcccCCcEEEEccCCC----------------------------CCCC--------HHHHHHHHccCCCceEEecCCCC
Q 010990 312 VKVIKPTILIGSSGVG----------------------------RTFT--------KEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 312 v~~vkptvLIG~S~~~----------------------------g~Ft--------~evv~~M~~~~~rPIIFaLSNPt 354 (496)
+++ +|..|=.-.+| |.|. .|+.+.|.+.|+.--|+=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~ 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH
Confidence 998 88887543333 1111 38899999999999999999997
No 119
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=89.56 E-value=0.33 Score=46.90 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=53.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-c---CCCCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNN 307 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~---~~~~~ 307 (496)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+- +..+ +|+. +.|... . +....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999875 87 7899999983 3322 2332 112221 1 11135
Q ss_pred HHHHhcccCCcEEEEccC
Q 010990 308 LLDAVKVIKPTILIGSSG 325 (496)
Q Consensus 308 L~e~v~~vkptvLIG~S~ 325 (496)
+.+.++.+.|++-|=...
T Consensus 80 ~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 80 SLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHHHHHHCCCCEEEEEe
Confidence 778888889998775443
No 120
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.40 E-value=1.4 Score=45.52 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=68.7
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG-~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-+|++.=|+-.+.+++.+++|++|-+ ..|.-+|.+|.. .|. .+.+|+|+ |
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~---T-------- 191 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF---T-------- 191 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---C--------
Confidence 44567888999999999999999999999998 889999998864 243 35666553 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
.+|.+.++. +|++|-..+.++.++.++++
T Consensus 192 -------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 -------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -------------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 236677887 99999999999999999988
No 121
>PRK07411 hypothetical protein; Validated
Probab=89.25 E-value=0.98 Score=48.23 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=64.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCc--------CCCchhchhhccc--
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 301 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~--------~~l~~~k~~~a~~-- 301 (496)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+ .|..+.- +++-..|..-|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D-~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l 101 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD-VVDSSNLQRQVIHGTSWVGKPKIESAKNRI 101 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC-EecccccCcCcccChHHCCCcHHHHHHHHH
Confidence 568899999999999999999999875 87 789999987 3333210 0111112111111
Q ss_pred ---cC---------CC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEe
Q 010990 302 ---HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 349 (496)
Q Consensus 302 ---~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFa 349 (496)
.+ .. .+..+.++. .|++|-+.... =++.++..++.....|.|++
T Consensus 102 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~~--~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 102 LEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDNF--PTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 01 01 134455554 78887765532 26677777777777888865
No 122
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.16 E-value=1.9 Score=44.87 Aligned_cols=102 Identities=25% Similarity=0.334 Sum_probs=67.2
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC--CCCCHHHHhcc
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 314 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~--~~~~L~e~v~~ 314 (496)
||.|+|| |.-|..+|-+|+. .|+ -..+.|+|.+ ..++..-+|.+-. .+.+-.. ..+++.+.+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~--~a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV--NTPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC--ccceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987743 365 2679999998 2333221243332 1111111 11346677887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHccCCCceEEecCCCC
Q 010990 315 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 315 vkptvLIG~S~~~---g~-----------Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
.|+.|=+++.+ |- .-+++++.+.++++..+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99887555553 21 1246777888899999999999996
No 123
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=89.08 E-value=0.87 Score=46.40 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.|++.+++..+.+. +.+++++|||-|+-+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34567777666653 4599999999999998887754 366 679999884
No 124
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=89.02 E-value=1.9 Score=40.87 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
.--+|-.|++.=|+-.+.+++..+++++|.+. -|.-+|.||.. +|. .+.+++++ +
T Consensus 15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-----~~a-------tVt~~h~~---T--------- 70 (160)
T PF02882_consen 15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-----KGA-------TVTICHSK---T--------- 70 (160)
T ss_dssp S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-----TT--------EEEEE-TT---S---------
T ss_pred CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-----CCC-------eEEeccCC---C---------
Confidence 34478889999999999999999999999985 88888888865 243 36666654 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
.+|.+.++. +|++|-..+.++.++.++++
T Consensus 71 ------------~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 71 ------------KNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ------------SSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ------------Ccccceeee--ccEEeeeecccccccccccc
Confidence 346677776 99999999999999888886
No 125
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.98 E-value=2.4 Score=47.44 Aligned_cols=163 Identities=22% Similarity=0.235 Sum_probs=102.4
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDA 311 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~ 311 (496)
-.+--++|+|.|..|+|||.-+.. .|+ ++.|++++-+= |.+|...|-+--.+|+... +.+=..|+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~-e~~lvrEa 76 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQY-EFSLVREA 76 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhhc-chHHHHHH
Confidence 356689999999999999998865 488 58899987665 3444344555556666431 11223445
Q ss_pred hcccCCcEEEEccCCCCCCCHHHHHHHHccC--CCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCee
Q 010990 312 VKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 389 (496)
Q Consensus 312 v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~--~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~ 389 (496)
++ -.+++..+|.|+ +.|.+||..+=+
T Consensus 77 l~-----------------Er~vL~~~APH~v~p~~~~lp~~~~~----------------------------------- 104 (532)
T COG0578 77 LA-----------------EREVLLRIAPHLVEPLPFLLPHLPGL----------------------------------- 104 (532)
T ss_pred HH-----------------HHHHHHHhCccccccCcCeEeccCCc-----------------------------------
Confidence 44 257888888665 344566554421
Q ss_pred eCccCcccccccchhhHHHHHhCC-cccCH--HHHHHHHHHHHhccccccCCCCcccCCCCCccchHHHHHHHHHHHHHH
Q 010990 390 FVPGQANNAYIFPGFGLGLVISGA-IRVHD--DMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYE 466 (496)
Q Consensus 390 ~~p~Q~NN~~iFPGiglG~l~~~a-~~itd--~m~~aAA~aLA~~v~~e~l~~g~l~P~~~~ireVS~~VA~aV~~~A~~ 466 (496)
---.+++.|+.+...+++. +..+. .+..+++..+.-.+.++-+..+-.||+-.. .+ .+...++++.|.+
T Consensus 105 -----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~ 176 (532)
T COG0578 105 -----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAE 176 (532)
T ss_pred -----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHh
Confidence 0123588999999999993 33322 222234555555566666655788886543 22 2667788888988
Q ss_pred cCC
Q 010990 467 LGV 469 (496)
Q Consensus 467 ~Gl 469 (496)
.|-
T Consensus 177 ~Ga 179 (532)
T COG0578 177 HGA 179 (532)
T ss_pred ccc
Confidence 883
No 126
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=88.95 E-value=0.83 Score=49.70 Aligned_cols=105 Identities=18% Similarity=0.287 Sum_probs=66.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh-cCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-CC-----CCCHH
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-----VNNLL 309 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~-~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~~-----~~~L~ 309 (496)
.||+|+||||+ -+-.|+..+.+. ..++ .+.|+|+|.+. +|.+.+...-+.+++.. .+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 555555555442 2343 37899999863 33221222222332221 11 25899
Q ss_pred HHhcccCCcEEEEccCCC--------------------------CC--------CCHHHHHHHHccCCCceEEecCCCC
Q 010990 310 DAVKVIKPTILIGSSGVG--------------------------RT--------FTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 310 e~v~~vkptvLIG~S~~~--------------------------g~--------Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
||+++ +|.+|=.=.+| |. .=.++++.|.+.|+..+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~ 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 99988 77766332222 22 2258888999999999999999997
No 127
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.92 E-value=1.2 Score=46.17 Aligned_cols=126 Identities=18% Similarity=0.288 Sum_probs=77.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc--CCCCCHHHHhcc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 314 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~e~v~~ 314 (496)
.||.|+|||..|..+|-.|+. .|+ ...+.|+|.+-=..++-.-+|.+.. +|.... ...++.++ +++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 499999999999999888754 255 3679999974211111111122221 222211 11245554 676
Q ss_pred cCCcEEEEccCCCCC--CCH------------HHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc--CCcEEEecCC
Q 010990 315 IKPTILIGSSGVGRT--FTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 378 (496)
Q Consensus 315 vkptvLIG~S~~~g~--Ft~------------evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t--~G~ai~AsGs 378 (496)
+|++|=+.+.+.. -|+ ++.+.+.+++..-+|+-.|||. .....-+++++ .-+-+|++|+
T Consensus 72 --adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 72 --SKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV---DIMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH---HHHHHHHHHHhCCCHHHEEecCc
Confidence 8988754443211 343 6778888999999999999996 56666666653 1134777765
Q ss_pred C
Q 010990 379 P 379 (496)
Q Consensus 379 P 379 (496)
-
T Consensus 147 ~ 147 (312)
T cd05293 147 N 147 (312)
T ss_pred h
Confidence 3
No 128
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.91 E-value=2 Score=44.34 Aligned_cols=83 Identities=24% Similarity=0.322 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 010990 216 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 294 (496)
Q Consensus 216 a~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 294 (496)
.-+|-.|++.=++-.+.+++.+++|++|.+. -|.-+|.||.. .|. .+++|+|+
T Consensus 139 ~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~-------------- 192 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK-------------- 192 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 3457788888888899999999999999764 68888888753 243 47777764
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 295 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 295 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|...+.++.++.|+++
T Consensus 193 ----------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ----------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1347777887 99999999999999999987
No 129
>PLN02527 aspartate carbamoyltransferase
Probab=88.65 E-value=29 Score=36.16 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=82.6
Q ss_pred HHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceee--cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHH
Q 010990 174 VKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGI 251 (496)
Q Consensus 174 v~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~Fn--DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~Gi 251 (496)
+-.+| .+++ =.-.++.....++ .+| .++||.| |+...--+=+||=++.-.+..| ++++.||+++|.+.=+ -+
T Consensus 92 vls~y-~D~i-viR~~~~~~~~~~-a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~-rv 165 (306)
T PLN02527 92 TVEGY-SDII-VLRHFESGAARRA-AAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANG-RT 165 (306)
T ss_pred HHHHh-CcEE-EEECCChhHHHHH-HHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCC-hh
Confidence 34556 4443 3556655554443 343 5799999 4456666778888888777666 4999999999998532 34
Q ss_pred HHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC----CCCCHHHHhcccCCcEEEEccCC
Q 010990 252 AELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE----PVNNLLDAVKVIKPTILIGSSGV 326 (496)
Q Consensus 252 A~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~----~~~~L~e~v~~vkptvLIG~S~~ 326 (496)
++-++.++.+..|+ ++.++-.+|+- +++....++++.. ...++.|++++ +||+.-.+.+
T Consensus 166 ~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~~q 228 (306)
T PLN02527 166 VRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLYQTRIQ 228 (306)
T ss_pred HHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEEECCcc
Confidence 55555554432254 57877777661 2222233443311 13689999998 9999987765
No 130
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.65 E-value=1.6 Score=45.11 Aligned_cols=85 Identities=20% Similarity=0.297 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG-~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-.|++.-|+-.+.+++..+++++|.+ .-|.-+|.||.. .|. .+++|+|+
T Consensus 136 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~a-------tVt~chs~------------ 191 (284)
T PRK14190 136 TFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----ENA-------TVTYCHSK------------ 191 (284)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEeCC------------
Confidence 34567888999999999999999999999976 468888888754 243 46777642
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|...+.++.|++++++
T Consensus 192 ------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1357888887 99999999999999999986
No 131
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.61 E-value=1.6 Score=45.17 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
-.-+|-+|++.=|+-.+.+++..+++|+|. |..|.-+|.+|... |. .+.++.++
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~------------- 191 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR------------- 191 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-------------
Confidence 456788888999999999999999999999 99999999999753 54 35555332
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-.-+.++.+++++++
T Consensus 192 -----------t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 192 -----------TRNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 1258888887 99999999999988887744
No 132
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=88.58 E-value=2.9 Score=43.80 Aligned_cols=111 Identities=23% Similarity=0.187 Sum_probs=73.7
Q ss_pred CCceeecCC---CchhHHHHHHHHHHHH------------------HhCCCcccceEEEeCcChHHHHHHHHHHHHHHHh
Q 010990 204 THLVFNDDI---QGTASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 262 (496)
Q Consensus 204 ~~~~FnDDi---QGTa~V~LAgll~Alr------------------~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~ 262 (496)
.+.|+|-.- +..|=-+++.+|+..| ..|..|.++++-|+|.|..|-.+|+.+...
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af---- 164 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF---- 164 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC----
Confidence 345555443 2334457788888887 556778999999999999999999999654
Q ss_pred cCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEc----cCCCCCCCHHHHHHH
Q 010990 263 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAM 338 (496)
Q Consensus 263 ~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~Ft~evv~~M 338 (496)
|+ ++..+|+. ..+. . .-........+|.+.++. .|++.-. ....|.++++-+..|
T Consensus 165 -gm-------~v~~~d~~----~~~~--~-----~~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 165 -GM-------KVIGYDPY----SPRE--R-----AGVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred -CC-------eEEEECCC----Cchh--h-----hccccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 66 58888873 1110 0 000111234678888887 8888754 122368888889988
Q ss_pred H
Q 010990 339 A 339 (496)
Q Consensus 339 ~ 339 (496)
.
T Consensus 224 K 224 (324)
T COG0111 224 K 224 (324)
T ss_pred C
Confidence 4
No 133
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.37 E-value=0.19 Score=46.98 Aligned_cols=90 Identities=23% Similarity=0.398 Sum_probs=50.3
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-Cccc-----------CCCcCCCchhchhhccc
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIV-----------SSRKDSLQHFKKPWAHE 301 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~-GLi~-----------~~r~~~l~~~k~~~a~~ 301 (496)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ..+. ....+.+.. +.|++.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchh
Confidence 5678999999999999999998653 54 35555553 0000 000000000 002221
Q ss_pred ----cCC--CCCHHHHhcccCCcEEEEc-----cCCCCCCCHHHHHHHH
Q 010990 302 ----HEP--VNNLLDAVKVIKPTILIGS-----SGVGRTFTKEVIEAMA 339 (496)
Q Consensus 302 ----~~~--~~~L~e~v~~vkptvLIG~-----S~~~g~Ft~evv~~M~ 339 (496)
.+. ...|.+.++. .|++|+. ...+.++|++.++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 011 1468888887 8999974 3444689999999995
No 134
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.23 E-value=1.9 Score=41.87 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=59.1
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhc---cc-c----CCCCCH
Q 010990 238 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 308 (496)
Q Consensus 238 riv~~G-AG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a---~~-~----~~~~~L 308 (496)
||.|+| +|..|..+|..|.+. | .++++.|++ .+ .+......+. .. . ....+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~---~~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LE---KAEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HH---HHHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999999653 4 367777663 11 1211111111 00 0 011356
Q ss_pred HHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCC
Q 010990 309 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 356 (496)
Q Consensus 309 ~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~ 356 (496)
.++++. +|++| ++..+ ...+++++.++......+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 778876 88776 44433 3457888888654445799999999753
No 135
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.19 E-value=3.3 Score=43.26 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=98.4
Q ss_pred CCCceeecCC---CchhHHHHHHHHHHHHH-------------------------hCCCcccceEEEeCcChHHHHHHHH
Q 010990 203 TTHLVFNDDI---QGTASVVLAGVVAALKL-------------------------IGGTLAEHRFLFLGAGEAGTGIAEL 254 (496)
Q Consensus 203 ~~~~~FnDDi---QGTa~V~LAgll~Alr~-------------------------~g~~l~d~riv~~GAG~Ag~GiA~l 254 (496)
..+++.|--- +..|=-+++.+|+..|- .|..|.+++|.|+|.|..|-.+|+.
T Consensus 89 ~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~ 168 (333)
T PRK13243 89 RGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR 168 (333)
T ss_pred cCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHH
Confidence 4666666422 22344467777776653 2346899999999999999999999
Q ss_pred HHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEccC----CCCCC
Q 010990 255 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTF 330 (496)
Q Consensus 255 l~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~F 330 (496)
+... |+ +++.+|+.. . . .. ...+. -...+|.|+++. .|+++=.-- .-+.|
T Consensus 169 l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~ell~~--aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 169 AKGF-----GM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLEELLRE--SDFVSLHVPLTKETYHMI 222 (333)
T ss_pred HHHC-----CC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHHHHHhh--CCEEEEeCCCChHHhhcc
Confidence 8643 64 577888741 1 1 10 01111 112479999887 898874321 13678
Q ss_pred CHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCC--CCcccCCeeeCccCcccccccchhhHH
Q 010990 331 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLG 407 (496)
Q Consensus 331 t~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf--~pv~~~G~~~~p~Q~NN~~iFPGiglG 407 (496)
+++.+..|. +..++.=.|.=.---|-.-.+|+ ..|+.-.|.=-=| +|.. + .. -=+..|+++-|=++-.
T Consensus 223 ~~~~~~~mk---~ga~lIN~aRg~~vd~~aL~~aL--~~g~i~gAaLDV~~~EP~~-~-~p--L~~~~nvilTPHia~~ 292 (333)
T PRK13243 223 NEERLKLMK---PTAILVNTARGKVVDTKALVKAL--KEGWIAGAGLDVFEEEPYY-N-EE--LFSLKNVVLAPHIGSA 292 (333)
T ss_pred CHHHHhcCC---CCeEEEECcCchhcCHHHHHHHH--HcCCeEEEEeccCCCCCCC-C-ch--hhcCCCEEECCcCCcC
Confidence 999999995 67788877764322222222333 3565443321111 1111 1 11 1234688888888743
No 136
>PRK08291 ectoine utilization protein EutC; Validated
Probab=88.04 E-value=1.7 Score=45.05 Aligned_cols=116 Identities=18% Similarity=0.224 Sum_probs=65.7
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 300 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~ 300 (496)
+|.+++..... -..++++|+|+|..|-.++..+... .++ +++.++|+. ..+ .......+.+
T Consensus 119 ~~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~ 179 (330)
T PRK08291 119 AGAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRA 179 (330)
T ss_pred HHHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhh
Confidence 35555555442 2346999999999988777766542 244 678888763 211 2222222221
Q ss_pred c----cCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHccCCCceEEec-CCCCCCCCCCHHH
Q 010990 301 E----HEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 363 (496)
Q Consensus 301 ~----~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~rPIIFaL-SNPt~~~E~~ped 363 (496)
. -....++.++++. +|++|-++... ..|+.+.++. .--|.++ |+-..+-|+.|+-
T Consensus 180 ~~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 180 ELGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred ccCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1 1123678899986 89998664432 3566666542 1123333 3322346888876
No 137
>PRK07574 formate dehydrogenase; Provisional
Probab=87.48 E-value=4.6 Score=43.36 Aligned_cols=146 Identities=14% Similarity=0.100 Sum_probs=90.7
Q ss_pred CCCceeecCCCc---hhHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcChHHHHHHHHHHHHH
Q 010990 203 TTHLVFNDDIQG---TASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEI 259 (496)
Q Consensus 203 ~~~~~FnDDiQG---Ta~V~LAgll~Alr~~--------------------g~~l~d~riv~~GAG~Ag~GiA~ll~~~~ 259 (496)
..+.+.|-.--. .|=-+++-+|+.+|-. +..|.+++|.|+|.|..|..+|+.+...
T Consensus 136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~f- 214 (385)
T PRK07574 136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPF- 214 (385)
T ss_pred CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhC-
Confidence 577777753322 3334688888776621 3458899999999999999999998653
Q ss_pred HHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEccC----CCCCCCHHHH
Q 010990 260 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVI 335 (496)
Q Consensus 260 ~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evv 335 (496)
|+ +++.+|+... .. + ..+.+ ......+|.|+++. .|+++=.-- ..+.|+++.+
T Consensus 215 ----G~-------~V~~~dr~~~---~~-~----~~~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l 271 (385)
T PRK07574 215 ----DV-------KLHYTDRHRL---PE-E----VEQEL--GLTYHVSFDSLVSV--CDVVTIHCPLHPETEHLFDADVL 271 (385)
T ss_pred ----CC-------EEEEECCCCC---ch-h----hHhhc--CceecCCHHHHhhc--CCEEEEcCCCCHHHHHHhCHHHH
Confidence 65 5788887532 00 0 00011 01112579999987 898873321 1267999999
Q ss_pred HHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecC
Q 010990 336 EAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 377 (496)
Q Consensus 336 ~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsG 377 (496)
..|. +..++.=.|+=.---|..--+|++ .|+.--|..
T Consensus 272 ~~mk---~ga~lIN~aRG~iVDe~AL~~AL~--sG~i~GAaL 308 (385)
T PRK07574 272 SRMK---RGSYLVNTARGKIVDRDAVVRALE--SGHLAGYAG 308 (385)
T ss_pred hcCC---CCcEEEECCCCchhhHHHHHHHHH--hCCccEEEE
Confidence 9996 567888777644333333334443 466544433
No 138
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.32 E-value=1.9 Score=44.61 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=67.4
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-+|++.=|+-.+.+++..++|++|.+. -|.-+|.||... |. .+ ...+.+++++.
T Consensus 135 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~-~~--~AtVt~~hs~t----------- 195 (286)
T PRK14184 135 GFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GK-FA--NATVTVCHSRT----------- 195 (286)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----cc-cC--CCEEEEEeCCc-----------
Confidence 345678889999999999999999999999764 677788777531 10 00 13466666531
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
.+|.+.++. +|++|+.-+.++.+++++|+
T Consensus 196 -------------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 196 -------------PDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -------------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 358888887 99999999999999999984
No 139
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=87.30 E-value=3.6 Score=42.89 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=75.8
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC--CCCCHHHHhcc
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 314 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~--~~~~L~e~v~~ 314 (496)
||.|+|| |.-|..+|-+|+. .|+. ..+.|+|.+. ..+..-+|.+.. ...+-.. ..+++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPYV-----SELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999998754 2552 6799999876 222211233322 0011010 11246788887
Q ss_pred cCCcEEEEccCCCCC--CC------------HHHHHHHHccCCCceEEecCCCCC-CCCCCHHHHhcccCC--cEEEecC
Q 010990 315 IKPTILIGSSGVGRT--FT------------KEVIEAMASFNEKPLILALSNPTS-QSECTAEEAYTWSKG--RAIFASG 377 (496)
Q Consensus 315 vkptvLIG~S~~~g~--Ft------------~evv~~M~~~~~rPIIFaLSNPt~-~~E~~peda~~~t~G--~ai~AsG 377 (496)
.|+.|=+.+.+.. -+ +++.+.+.+++..-||+-.|||.. ++.+...-++++++= +-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 9988755554321 11 467778888999999999999961 112255556554310 1255555
Q ss_pred C
Q 010990 378 S 378 (496)
Q Consensus 378 s 378 (496)
.
T Consensus 146 ~ 146 (312)
T TIGR01772 146 T 146 (312)
T ss_pred c
Confidence 3
No 140
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.14 E-value=1.9 Score=44.73 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~G-AG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
-.-+|-.|++.=|+-.+.+++.++|+|+| .|..|..+|.+|+.. |. .+++++++ .
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T----- 192 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------T----- 192 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------C-----
Confidence 34577888888889999999999999999 999999999999753 54 46666542 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHH
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEV 334 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~ev 334 (496)
.+|.|+++. +|++|-+-+.++.+++++
T Consensus 193 ------------~~l~e~~~~--ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 193 ------------RDLPAVCRR--ADILVAAVGRPEMVKGDW 219 (296)
T ss_pred ------------CCHHHHHhc--CCEEEEecCChhhcchhe
Confidence 136788876 999998877777666665
No 141
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.08 E-value=2.6 Score=43.48 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
-.-+|-+|++.=|+-.+.+++.++++++|-+. -|.-+|.||.. .|. .+.+|+|+
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~------------- 191 (278)
T PRK14172 137 FLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK------------- 191 (278)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 35678889999999999999999999999764 68888888854 243 47777763
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-..+.++.|++|+++
T Consensus 192 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 -----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347777887 99999999999999999987
No 142
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.02 E-value=1.4 Score=42.90 Aligned_cols=118 Identities=12% Similarity=0.177 Sum_probs=67.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcc
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 314 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 314 (496)
++.||.|+|+|..|..++..++.. |.. -.++++++++. + .+.+...+.+|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 356899999999999999888642 320 11346655542 0 011222222221 1123567788875
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccC-CcEEEecC
Q 010990 315 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASG 377 (496)
Q Consensus 315 vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~-G~ai~AsG 377 (496)
.|++| ++.++. .-+++++.++.+.+..+|+.++.-.+ .+..-++.+ ++.++-++
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi~-----~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGIG-----PSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCCC-----HHHHHHHcCCCCeEEEEC
Confidence 78776 555454 44889998875544557777776653 334444433 33455455
No 143
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.94 E-value=2.1 Score=44.40 Aligned_cols=87 Identities=16% Similarity=0.288 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 010990 216 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 294 (496)
Q Consensus 216 a~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 294 (496)
.-+|-+|++.=++..+.+++..++||+|.+. -|.-+|.||...+.+ .| ..+.++.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC--------------
Confidence 4467778899999999999999999999764 688888888642211 12 246665542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 295 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 295 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|+.-+.++.|++++|+
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1347888887 99999999999999999994
No 144
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.90 E-value=0.59 Score=45.20 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=34.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECC
Confidence 458899999999999999999999875 87 789999998
No 145
>PRK08374 homoserine dehydrogenase; Provisional
Probab=86.82 E-value=3.5 Score=43.23 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=63.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH---HHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch-----hchhhcccc------
Q 010990 237 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-----FKKPWAHEH------ 302 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~---~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~-----~k~~~a~~~------ 302 (496)
.||.++|.|..|.+++++|.+ .+.++.|+.. +=+-+.||+|-++..+. ++. +++.+....
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~G--id~~~l~~~~~~~~~~~~~~~~~ 76 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPED--IDLREAKEVKENFGKLSNWGNDY 76 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCC--CChHHHHHhhhccCchhhccccc
Confidence 589999999999999999977 3333345321 22445699998876542 322 222221100
Q ss_pred C-CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 303 E-PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 303 ~-~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
. ..-++.|.++...+||+|-+++.. ..-+-+.+.+. ...++|.
T Consensus 77 ~~~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 77 EVYNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cccCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEE
Confidence 0 012678888877899999998643 33333334443 4677775
No 146
>PLN02306 hydroxypyruvate reductase
Probab=86.70 E-value=5.2 Score=42.92 Aligned_cols=129 Identities=17% Similarity=0.212 Sum_probs=82.0
Q ss_pred cCCCceeecCC---CchhHHHHHHHHHHHHHh---------------------CCCcccceEEEeCcChHHHHHHHHHHH
Q 010990 202 GTTHLVFNDDI---QGTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 202 r~~~~~FnDDi---QGTa~V~LAgll~Alr~~---------------------g~~l~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
+..+.+.|--- ..+|=-+++-+|+.+|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 35777777532 234444677777766532 345889999999999999999999864
Q ss_pred HHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc--------c-c-CCCCCHHHHhcccCCcEEEEc----
Q 010990 258 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E-H-EPVNNLLDAVKVIKPTILIGS---- 323 (496)
Q Consensus 258 ~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~--------~-~-~~~~~L~e~v~~vkptvLIG~---- 323 (496)
+| |+ +++.+|+..- . ........+.. + . ....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 43 54 5888887421 0 01100001100 0 0 112579999987 9998863
Q ss_pred cCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010990 324 SGVGRTFTKEVIEAMASFNEKPLILALSN 352 (496)
Q Consensus 324 S~~~g~Ft~evv~~M~~~~~rPIIFaLSN 352 (496)
....|.|+++.++.|. +.-++.=.|+
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~aR 273 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNASR 273 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECCC
Confidence 2224689999999996 5667776665
No 147
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=85.89 E-value=3.1 Score=43.34 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-+|++.=|+-.+.+++.+++||+|-+. -|.-+|.||.. .|. .+++|+|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~A-------TVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----ADA-------TVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 445678888899999999999999999999764 67778877754 243 57778664
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
.++|.+.++. +|++|-..+.++.++.|+++
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347788887 99999999999999999998
No 148
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.85 E-value=4.3 Score=42.37 Aligned_cols=122 Identities=16% Similarity=0.086 Sum_probs=73.4
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHHhc
Q 010990 237 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 313 (496)
Q Consensus 237 ~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~ 313 (496)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.-. ..+..-+|.+...++.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887764 255100011379999985322 111111233322233221111134567788
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHccC-CCceEEecCCCCCCCCCCHHHHhccc
Q 010990 314 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 368 (496)
Q Consensus 314 ~vkptvLIG~S~~~g~--Ft------------~evv~~M~~~~-~rPIIFaLSNPt~~~E~~peda~~~t 368 (496)
+ .|++|=+.+.+.. -| +++...+.+++ +.-||+-.|||- .+..--+++++
T Consensus 78 d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 142 (322)
T cd01338 78 D--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC---NTNALIAMKNA 142 (322)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 7 9998855554311 23 46777788888 499999999994 66666666664
No 149
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.85 E-value=3.6 Score=41.23 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=56.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCC-CcCCCch---hchhhccccCCCCCHHHHhc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH---FKKPWAHEHEPVNNLLDAVK 313 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~-r~~~l~~---~k~~~a~~~~~~~~L~e~v~ 313 (496)
||.|+|+|+.|..+|..|... | .+++++++ +--.+. +...+.- ...... ......+..++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC
Confidence 799999999999999998653 4 36888877 210000 0000100 000000 0011245555554
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCCC
Q 010990 314 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 355 (496)
Q Consensus 314 ~vkptvLIG~S~~~g~Ft~evv~~M~~~-~~rPIIFaLSNPt~ 355 (496)
. +|++|=+... ...+++++.++.+ .++.+|+.+.|.-.
T Consensus 68 ~--~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 P--FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred C--CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 4 7766533322 2478999988763 34568888999863
No 150
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.83 E-value=2.3 Score=43.46 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=63.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhc-ccc---CCCCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-HEH---EPVNN 307 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a-~~~---~~~~~ 307 (496)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-.. +++. | -++ .+. ....-
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q-~~~~~~~vG~~Kve~ 88 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-Q-IHALRDNVGLAKAEV 88 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-c-cccChhhcChHHHHH
Confidence 358899999999999999999999875 77 78999998843222 2442 1 122 111 01124
Q ss_pred HHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCC
Q 010990 308 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 356 (496)
Q Consensus 308 L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~ 356 (496)
+.+.+..+.|++-|-.- ...++++-+...-...-.=||-+.-|++.+
T Consensus 89 ~~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k 135 (268)
T PRK15116 89 MAERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPK 135 (268)
T ss_pred HHHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHH
Confidence 66667777777765432 223455544443221223456666666533
No 151
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.74 E-value=2.4 Score=43.18 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=62.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCCCCCHHHHhccc-
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI- 315 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~v- 315 (496)
||-|+|.|..|..+|..|... |. ++.+.|++ . +... .+++. .....++.|+++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g~-------~V~~~dr~----~---~~~~----~l~~~g~~~~~s~~~~~~~~~ 58 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----GH-------DCVGYDHD----Q---DAVK----AMKEDRTTGVANLRELSQRLS 58 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----CC-------EEEEEECC----H---HHHH----HHHHcCCcccCCHHHHHhhcC
Confidence 799999999999999998653 53 56666663 1 1111 22211 11224666665543
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccC-CCceEEecCCCCCCCCCCHH
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTSQSECTAE 362 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~~-~rPIIFaLSNPt~~~E~~pe 362 (496)
++|++|= +-+.+ ..+++++.+...- +..||+-+||.. ++-+-+
T Consensus 59 ~~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 59 APRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 5888873 44444 7889998887653 568999999975 444444
No 152
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.56 E-value=2.1 Score=44.79 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.||.|+|+|..|.|||..++.+ |. ++.++|..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 5899999999999999998764 65 57777763
No 153
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=85.48 E-value=1.3 Score=48.60 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=66.4
Q ss_pred HHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcC-CCc--eeecCCCchhHHHHHHHHHHHHHh--------CCCcccc
Q 010990 169 EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAEH 237 (496)
Q Consensus 169 efv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~-~~~--~FnDDiQGTa~V~LAgll~Alr~~--------g~~l~d~ 237 (496)
+.+..+.... |+ |..|=+....-.++.++|.- ..| .+|++..+.|....+-+++.++.. ...-.+.
T Consensus 137 ~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (515)
T TIGR03140 137 QALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPY 213 (515)
T ss_pred HHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCC
Confidence 3334444444 43 55555777777888899974 444 458887888888888888887654 1224457
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 279 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~ 279 (496)
+++|+|||+||+..|..+.. .|. ++.++|+
T Consensus 214 dVvIIGgGpAGl~AA~~la~-----~G~-------~v~li~~ 243 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAAR-----KGL-------RTAMVAE 243 (515)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEec
Confidence 89999999999999988765 354 5666764
No 154
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.47 E-value=1.4 Score=44.48 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=57.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCC-CcCCCch-hchhhc-c-ccCCCCCHHHHhc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH-FKKPWA-H-EHEPVNNLLDAVK 313 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~-r~~~l~~-~k~~~a-~-~~~~~~~L~e~v~ 313 (496)
||.|+|+|..|..+|..|... |. +++++|+..-..+. +...... +...+. . ......++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----GH-------DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998753 43 57788875211100 0000000 000000 0 0011246777776
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCC
Q 010990 314 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 354 (496)
Q Consensus 314 ~vkptvLIG~S~~~g~Ft~evv~~M~~~-~~rPIIFaLSNPt 354 (496)
. +|++| ++... ...+++++.+... .+.-+|..++|-.
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeecc
Confidence 5 78777 33323 3578888887754 3456888888854
No 155
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.47 E-value=23 Score=35.64 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=54.7
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 315 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v 315 (496)
..||.|+|+|..|.++|+.|+.. |.- ...+++++|+. . .+.+...+.+|- .....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r~----~--~~~~~~l~~~~g--~~~~~~~~e~~~~- 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNRS----N--ETRLQELHQKYG--VKGTHNKKELLTD- 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----C--HHHHHHHHHhcC--ceEeCCHHHHHhc-
Confidence 35899999999999999988653 410 11456766652 0 011122221111 1112466677764
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 354 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~-~~rPIIFaLSNPt 354 (496)
+|++| ++-.+ -..+++++.+... .+..+|..+++-+
T Consensus 66 -aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 66 -ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 67655 33333 2355666666543 3456777776654
No 156
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=85.30 E-value=1.7 Score=44.23 Aligned_cols=117 Identities=21% Similarity=0.407 Sum_probs=72.1
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCC----Cchhchhhcccc---CCCCCHHHH
Q 010990 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS----LQHFKKPWAHEH---EPVNNLLDA 311 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~----l~~~k~~~a~~~---~~~~~L~e~ 311 (496)
|.|+|||..|.++|.+++. .|+ + .++++|.+ .++.+. +.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5799999999999988764 355 1 69999986 222110 11100 000000 112354 45
Q ss_pred hcccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCc---EEE
Q 010990 312 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR---AIF 374 (496)
Q Consensus 312 v~~vkptvLIG~S~~~g~--------------Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~---ai~ 374 (496)
+++ +|++|=+.+.+.. +-+++++.|.+++...+|+-.|||. ......+++++ |. -++
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~~~rvi 137 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFPRNRVI 137 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCHHHEE
Confidence 766 8988843332211 2347888999999999999999995 56666666665 32 478
Q ss_pred ecCC
Q 010990 375 ASGS 378 (496)
Q Consensus 375 AsGs 378 (496)
++|+
T Consensus 138 Glgt 141 (300)
T cd01339 138 GMAG 141 (300)
T ss_pred Eecc
Confidence 8874
No 157
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.24 E-value=3.4 Score=42.76 Aligned_cols=86 Identities=19% Similarity=0.348 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GAG-~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
-.-+|-.|++.-++-.+.+++.+++|++|.+ .-|.-+|.||..- ..| ..+.+|.|+
T Consensus 137 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~------------- 193 (284)
T PRK14193 137 PLPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG------------- 193 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC-------------
Confidence 3457888899999999999999999999976 4688888887531 013 246666653
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-..+.++.+++|+++
T Consensus 194 -----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 -----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred -----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1357888887 99999999999999999987
No 158
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=85.22 E-value=4.4 Score=42.37 Aligned_cols=121 Identities=18% Similarity=0.131 Sum_probs=73.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHHhcc
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 314 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 314 (496)
||.|+|| |..|..+|-.|+. .|+-.-+=...+.|+|.+.-. .++..-+|.+..-++.+...-..+..+.+++
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d 79 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKD 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCC
Confidence 8999998 9999999988764 255210011279999986311 1111111322221221111111355677877
Q ss_pred cCCcEEEEccCCCC--CCC------------HHHHHHHHccCC-CceEEecCCCCCCCCCCHHHHhccc
Q 010990 315 IKPTILIGSSGVGR--TFT------------KEVIEAMASFNE-KPLILALSNPTSQSECTAEEAYTWS 368 (496)
Q Consensus 315 vkptvLIG~S~~~g--~Ft------------~evv~~M~~~~~-rPIIFaLSNPt~~~E~~peda~~~t 368 (496)
.|++|=+.+.+. --| +++++.+.+++. .-||+--|||- .++.--+++++
T Consensus 80 --aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 80 --VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 898885555431 123 467778888887 99999999994 67777777765
No 159
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.98 E-value=5.5 Score=43.03 Aligned_cols=111 Identities=15% Similarity=0.219 Sum_probs=59.5
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc---CCCCCHHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLD 310 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~e 310 (496)
+...||+|+|.|..|+++|++|.. .|. .+.++|.+-- ....+....+.... .......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSE------EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCC------ccchHHHHHHHhCCCEEEeCCCChH
Confidence 456799999999999999999865 364 5788886420 01111001111100 00111234
Q ss_pred HhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 010990 311 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 378 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGs 378 (496)
-++ ++|.+|=.++.+ .-.+++.++.. ..-||+ | .+| -++++.+.+.|-.|||
T Consensus 74 ~~~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~---s----~~e----~~~~~~~~~vIaITGT 125 (458)
T PRK01710 74 KLD--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT---S----EME----EFIKYCPAKVFGVTGS 125 (458)
T ss_pred Hhc--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE---e----chH----HhhhhcCCCEEEEECC
Confidence 444 388766433332 22455555544 346775 2 223 3344445578888997
No 160
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=84.94 E-value=0.89 Score=51.80 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
.+|++.||+|+|||.-|+-+|+.|+.+ |+ ++|.++|.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 457899999999999999999999876 87 79999998633
No 161
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.75 E-value=1.4 Score=48.24 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=63.1
Q ss_pred eEeeeCCCccHHHHHHHHcC-CCc--eeecCCCchhHHHHHHHHHHHHHhCC--------CcccceEEEeCcChHHHHHH
Q 010990 184 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIGG--------TLAEHRFLFLGAGEAGTGIA 252 (496)
Q Consensus 184 i~~EDf~~~~af~iL~~yr~-~~~--~FnDDiQGTa~V~LAgll~Alr~~g~--------~l~d~riv~~GAG~Ag~GiA 252 (496)
|.+|=+...+-.++.++|.- ..| ++|++....|....+-++..++.... ...+-.+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66777777777888999963 444 45777788888888899988875321 23456899999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 253 ELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 253 ~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 98865 365 56667654
No 162
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.75 E-value=1.3 Score=45.52 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=52.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhch--hhccc------cCCCCCH
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE------HEPVNNL 308 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~--~~a~~------~~~~~~L 308 (496)
.||.|+|+|+.|.++|..|... |. ++.++|+..= +.+.+....+ .+... .....++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G~-------~V~~~~r~~~----~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----GV-------PVRLWARRPE----FAAALAAERENREYLPGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEeCCHH----HHHHHHHhCcccccCCCCcCCCCeEEeCCH
Confidence 3799999999999999999763 53 4777777311 0001111100 00000 0122467
Q ss_pred HHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010990 309 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 309 ~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
.|+++. .|++|=+ .... ..+++++.+. +.-+|+-+||..
T Consensus 69 ~e~~~~--aD~Vi~~-v~~~-~~~~v~~~l~---~~~~vi~~~~Gi 107 (328)
T PRK14618 69 EEALAG--ADFAVVA-VPSK-ALRETLAGLP---RALGYVSCAKGL 107 (328)
T ss_pred HHHHcC--CCEEEEE-CchH-HHHHHHHhcC---cCCEEEEEeecc
Confidence 787765 6776632 2221 3577776654 334667778853
No 163
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.55 E-value=33 Score=34.62 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 4799999999999999998763 5 368888864
No 164
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.51 E-value=4.1 Score=42.39 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-+|++.=|+-.|.+++.++++++|.+. -|.-+|.||.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 455678888899999999999999999999764 67777777753 2321 01346666554
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-..+.++.+++++++
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788887 99999999999999999998
No 165
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.40 E-value=4.2 Score=42.25 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-.|++.=|+-.+.+++.+++|++|.+. -|.-+|.||.. .|. .+.+|+|+ |
T Consensus 138 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVt~chs~---T-------- 194 (294)
T PRK14187 138 CLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----ENC-------TVTTVHSA---T-------- 194 (294)
T ss_pred CccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CCC-------EEEEeCCC---C--------
Confidence 345678888999999999999999999999764 67788877753 243 47777764 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
.+|.+.++. +|++|-..+.++.++.++++
T Consensus 195 -------------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 195 -------------RDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 346777887 99999999999999999988
No 166
>PRK06141 ornithine cyclodeaminase; Validated
Probab=84.37 E-value=7.7 Score=40.06 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=63.4
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc---CCCCCHHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLD 310 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~e 310 (496)
....+++|+|+|..|-.++..++.. .+. ++|+++|+. ..+ ...+...+.+.. ....++.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~ 185 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEA 185 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHH
Confidence 3567999999999999998876543 233 678888773 221 222333332111 12367888
Q ss_pred HhcccCCcEEEEccCCC-CCCCHHHHHHHHccCCCceEEec-CCCCCCCCCCHHH
Q 010990 311 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 363 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~rPIIFaL-SNPt~~~E~~ped 363 (496)
++++ .|++|-++... ..|+.+.++. .-.|-+. |.+..+-|+.++-
T Consensus 186 av~~--aDIVi~aT~s~~pvl~~~~l~~------g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 186 AVRQ--ADIISCATLSTEPLVRGEWLKP------GTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred HHhc--CCEEEEeeCCCCCEecHHHcCC------CCEEEeeCCCCcccccCCHHH
Confidence 9976 99998765543 2456555532 2244444 4455677888764
No 167
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.18 E-value=1.6 Score=45.92 Aligned_cols=106 Identities=23% Similarity=0.390 Sum_probs=71.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc----cCCCCCHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 309 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~ 309 (496)
...-|++|+|.|-+|+--|+..+ |++ .++.++|.+ .+| |....-.|..+ .....+++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999888764 443 468888875 222 33333344432 12335799
Q ss_pred HHhcccCCcEEEEc-----cCCCCCCCHHHHHHHHccCCCceE----------EecCCCCCCCCCCHHH
Q 010990 310 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFNEKPLI----------LALSNPTSQSECTAEE 363 (496)
Q Consensus 310 e~v~~vkptvLIG~-----S~~~g~Ft~evv~~M~~~~~rPII----------FaLSNPt~~~E~~ped 363 (496)
|++++ .|.+||. +..|.+.|+|+++.|. +.-+| |-=|.||+..+-|.+.
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk---pGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK---PGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcC---CCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99986 9998887 5556779999999996 33333 4455666666655543
No 168
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.14 E-value=3.9 Score=43.60 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.4
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
-.+.||.|+|||+-|+++|..+.+
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHh
Confidence 456799999999999999999976
No 169
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.14 E-value=2 Score=44.25 Aligned_cols=126 Identities=21% Similarity=0.325 Sum_probs=74.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC-CCCCHHHHhcccC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 316 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~-~~~~L~e~v~~vk 316 (496)
||.|+|+|..|..+|..++. .|+ ...++++|++-=..++...++.+. .++-.... ..++. +.+++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999988765 265 267999997411011100002111 11111100 01344 55666
Q ss_pred CcEEEEccCCCCC----C----------CHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccC--CcEEEecCCCC
Q 010990 317 PTILIGSSGVGRT----F----------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSPF 380 (496)
Q Consensus 317 ptvLIG~S~~~g~----F----------t~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~--G~ai~AsGsPf 380 (496)
.|+.|=+.+.+.. . =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|++|.-.
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 7877744443311 1 136777888888999999999994 777777776651 23477777543
No 170
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.13 E-value=4.3 Score=42.12 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=68.7
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 213 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 213 QGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG-~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
.+-.-+|-+|++.=++..+.+++..++|++|-+ ..|.-+|.||.. .|. .+.+|+|+.
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~T---------- 193 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSKT---------- 193 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCCC----------
Confidence 455678888999999999999999999999976 468888888754 243 466676531
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 292 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 292 ~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
.+|.+.++. +|++|-.-+.++.+++++|+
T Consensus 194 --------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 194 --------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred --------------CCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 347788887 99999999999999999988
No 171
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.08 E-value=5.5 Score=40.55 Aligned_cols=93 Identities=15% Similarity=0.230 Sum_probs=56.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-CCCCCHHHHhccc-
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI- 315 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~e~v~~v- 315 (496)
||.|+|.|..|..+|+.|... |. +++++|+.. .+ . +++.... ....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~----~~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----GH-------EVVGYDRNP----EA---V----EALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----CC-------eEEEEECCH----HH---H----HHHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999999753 53 577777741 11 1 1222211 1235777877765
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc-cCCCceEEecCCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 354 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~-~~~rPIIFaLSNPt 354 (496)
++|++|=+-. .+...++++..+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3676553322 23355666655543 24567888887643
No 172
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.97 E-value=4.4 Score=41.96 Aligned_cols=85 Identities=21% Similarity=0.404 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-+|++.=|+-.|.+++..++|++|.+. -|.-+|.||.. .|. .+.+|+|+
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------ 190 (284)
T PRK14170 135 SFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR------------ 190 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 345678888899999999999999999999764 67778877753 243 46777653
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-..+.++.|++++++
T Consensus 191 ------------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ------------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347777887 99999999999999999988
No 173
>PRK06436 glycerate dehydrogenase; Provisional
Probab=83.93 E-value=16 Score=37.83 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=64.3
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHH
Q 010990 231 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 310 (496)
Q Consensus 231 g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 310 (496)
+..|.+.++.|+|-|..|..+|+++. ++ |+ +++.+|+... .+.. + . ...+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~~r~~~-----~~~~---~-~------~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAYTRSYV-----NDGI---S-S------IYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEECCCCc-----ccCc---c-c------ccCCHHH
Confidence 35799999999999999999998664 32 65 5888887521 0111 0 0 1247889
Q ss_pred HhcccCCcEEEEccC----CCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010990 311 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 311 ~v~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
+++. +|+++=+-. .-+.|+++.++.|. +..++.=+|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 8876 888873311 13578999999996 677888888754
No 174
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.85 E-value=1.5 Score=39.53 Aligned_cols=32 Identities=38% Similarity=0.499 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||+++|+|.-|..+|+.|+.. |+ ++|.++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCC
Confidence 689999999999999999775 76 789999987
No 175
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=83.71 E-value=1.8 Score=46.78 Aligned_cols=80 Identities=13% Similarity=0.025 Sum_probs=46.2
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCC---Cchhchhhccc
Q 010990 225 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS---LQHFKKPWAHE 301 (496)
Q Consensus 225 ~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~---l~~~k~~~a~~ 301 (496)
.++.-....|...|++|+|-+.-..++++.|.+ .|+.. ..+ ++.++.+. +... .-+.
T Consensus 300 ~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~~--------~~~~~~~~~~~~~~~-~~~~-- 359 (432)
T TIGR01285 300 DAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VAA--------VTTTGSPLLQKLPVE-TVVI-- 359 (432)
T ss_pred HHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEE--------EeCCCCHHHHhCCcC-cEEe--
Confidence 344444445678999999988888999999765 37732 111 12211110 1000 0010
Q ss_pred cCCCCCHHHHhcccCCcEEEEccC
Q 010990 302 HEPVNNLLDAVKVIKPTILIGSSG 325 (496)
Q Consensus 302 ~~~~~~L~e~v~~vkptvLIG~S~ 325 (496)
.....+.+.++..+||++||-|-
T Consensus 360 -~D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 360 -GDLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred -CCHHHHHHHHhhcCCCEEEECcc
Confidence 11235788888889999998654
No 176
>PRK05442 malate dehydrogenase; Provisional
Probab=83.61 E-value=7 Score=40.93 Aligned_cols=121 Identities=15% Similarity=0.075 Sum_probs=72.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHHhcc
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 314 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 314 (496)
||.|.|| |..|..+|-.|+.. |+-...-...+.|+|.+.-. .++..-+|.+...++-+...-..+..+.+++
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 9999998 99999998877653 33100001279999985321 1111112333322332221112355677887
Q ss_pred cCCcEEEEccCC---CCC-----------CCHHHHHHHHccC-CCceEEecCCCCCCCCCCHHHHhccc
Q 010990 315 IKPTILIGSSGV---GRT-----------FTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 368 (496)
Q Consensus 315 vkptvLIG~S~~---~g~-----------Ft~evv~~M~~~~-~rPIIFaLSNPt~~~E~~peda~~~t 368 (496)
.|+.|=+.+. +|- .=+++.+.+.+++ +..||+-.|||- .+..--+++++
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 8988744443 231 1245667777866 699999999994 66776776665
No 177
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.57 E-value=3.9 Score=42.27 Aligned_cols=86 Identities=17% Similarity=0.268 Sum_probs=68.7
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 213 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 213 QGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
.+-.-+|-+|++.=|+-.+.+++.++++++|-+. -|--+|.||.. .|. .+.+|+|+ |
T Consensus 134 ~~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~---T------- 191 (282)
T PRK14166 134 SGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK---T------- 191 (282)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---C-------
Confidence 4556788899999999999999999999999764 68888888753 243 46667663 1
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 292 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 292 ~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
.+|.+.++. +|++|-..+.++.|++++++
T Consensus 192 --------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 192 --------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred --------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 347788887 99999999999999999987
No 178
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.47 E-value=3.9 Score=38.95 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=24.5
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 233 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 233 ~l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++++.+++|.|| |..|..+++.+++ .|. ++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~-----~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAA-----EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 367789999998 4556556666543 353 58888875
No 179
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=83.40 E-value=0.98 Score=50.16 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=33.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
+++.|.+++|||+-||+||+.|+.+ |+ ++|.++|.--+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kV 375 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKV 375 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCee
Confidence 4678999999999999999999887 66 89999998533
No 180
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=83.36 E-value=5.2 Score=38.99 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=80.7
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHh
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 312 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~ee-A~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v 312 (496)
...+||.|+|.|..+ .+|.-+...|.. ++..+- +..-+.+.|..-+++.- . +-..+-.-|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa-~~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~-a-nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSA-ANAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAI-A-NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHH-HHHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHH-h-ccccHHHHHHHH------HHHcC
Confidence 456899999999887 477777766542 110000 11122232332232211 1 112344455543 32222
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeCc
Q 010990 313 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVP 392 (496)
Q Consensus 313 ~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~p 392 (496)
-+-|++|+.|..|. |+++++.+. -|.+ .+-+.|.-||.+-.|+ .-..
T Consensus 108 --~~gDvli~iS~SG~--s~~v~~a~~-----------------------~Ak~-~G~~vI~IT~~~~s~l-----~~l~ 154 (196)
T PRK10886 108 --HAGDVLLAISTRGN--SRDIVKAVE-----------------------AAVT-RDMTIVALTGYDGGEL-----AGLL 154 (196)
T ss_pred --CCCCEEEEEeCCCC--CHHHHHHHH-----------------------HHHH-CCCEEEEEeCCCCChh-----hhcc
Confidence 35799999999887 899999874 2222 1234445566443333 1122
Q ss_pred cCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccc
Q 010990 393 GQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 433 (496)
Q Consensus 393 ~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~ 433 (496)
+.++=....|.-- ..+-.++-+..-+.|.+++.
T Consensus 155 ~~~D~~i~ip~~~--------~~~v~e~h~~i~H~l~~~v~ 187 (196)
T PRK10886 155 GPQDVEIRIPSHR--------SARIQEMHMLTVNCLCDLID 187 (196)
T ss_pred ccCCEEEEcCCCc--------hHHHHHHHHHHHHHHHHHHH
Confidence 3455556666322 23456777888899988884
No 181
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.78 E-value=0.61 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.0
Q ss_pred cccceEEEeCcChHHHHHHHHHHHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALE 258 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~ 258 (496)
.+.-+|+|+|||.||+..|++|.+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~ 37 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF 37 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc
Confidence 3455999999999999999999875
No 182
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=82.57 E-value=9 Score=40.08 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=75.3
Q ss_pred CCCceeec-CC--CchhHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHH
Q 010990 203 TTHLVFND-DI--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 260 (496)
Q Consensus 203 ~~~~~FnD-Di--QGTa~V~LAgll~Alr~-------------------~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~ 260 (496)
..+.+.|- +. +.+|=-+++-+|+.+|- .+..|.+.+|.|+|.|..|..+|+.+...
T Consensus 91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-- 168 (330)
T PRK12480 91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-- 168 (330)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC--
Confidence 45555553 22 23444567777776663 13458889999999999999999988642
Q ss_pred HhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEc-cCC---CCCCCHHHHH
Q 010990 261 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS-SGV---GRTFTKEVIE 336 (496)
Q Consensus 261 ~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~-S~~---~g~Ft~evv~ 336 (496)
|. +++.+|+.. .. . ..+.+ ...+|.|+++. .|+++=. ... -+.|+++++.
T Consensus 169 ---G~-------~V~~~d~~~----~~---~----~~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~ 222 (330)
T PRK12480 169 ---GA-------TITAYDAYP----NK---D----LDFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFD 222 (330)
T ss_pred ---CC-------EEEEEeCCh----hH---h----hhhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHh
Confidence 54 588888641 10 0 01111 22578899887 8877632 211 1457778888
Q ss_pred HHHccCCCceEEecCCC
Q 010990 337 AMASFNEKPLILALSNP 353 (496)
Q Consensus 337 ~M~~~~~rPIIFaLSNP 353 (496)
.|. +..++.-.|.-
T Consensus 223 ~mk---~gavlIN~aRG 236 (330)
T PRK12480 223 HVK---KGAILVNAARG 236 (330)
T ss_pred cCC---CCcEEEEcCCc
Confidence 885 56677766654
No 183
>PLN02602 lactate dehydrogenase
Probab=82.42 E-value=2.9 Score=44.25 Aligned_cols=124 Identities=19% Similarity=0.305 Sum_probs=78.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc--CCCCCHHHHhcc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 314 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~e~v~~ 314 (496)
.||.|+|||..|..+|-+|+. .|+ ...+.|+|.+-=..++-.-+|.+.. +|-... ...++.++ +++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~~~i~~~~dy~~-~~d 105 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPRTKILASTDYAV-TAG 105 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCCCEEEeCCCHHH-hCC
Confidence 499999999999999998764 366 2579999974211111111122221 222111 01134544 666
Q ss_pred cCCcEEEEccCCC---CCCCH------------HHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccC--CcEEEecC
Q 010990 315 IKPTILIGSSGVG---RTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASG 377 (496)
Q Consensus 315 vkptvLIG~S~~~---g~Ft~------------evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~--G~ai~AsG 377 (496)
+|++|=+.+.+ | -|+ ++.+.|.+++..-+|+-.|||. .....-++++++ =+-+|++|
T Consensus 106 --aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~g 179 (350)
T PLN02602 106 --SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGSG 179 (350)
T ss_pred --CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEeec
Confidence 89988665543 2 343 7788888999999999999995 677777777662 13477776
Q ss_pred C
Q 010990 378 S 378 (496)
Q Consensus 378 s 378 (496)
.
T Consensus 180 t 180 (350)
T PLN02602 180 T 180 (350)
T ss_pred c
Confidence 4
No 184
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=82.29 E-value=2.1 Score=39.51 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=26.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
+|||+|+|.||+..|..|.. .| .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999973 24 4788887643
No 185
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.14 E-value=4.2 Score=40.54 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=55.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCC-CcCCCchhchhhccccCCCCCHHHHhcccC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 316 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~-r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 316 (496)
||.|+|+|+.|..+|..|... | .+++++|+++=-.+. +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999988653 4 368888874211100 0001100000000000112345443 3 4
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCC-CceEEecCCCC
Q 010990 317 PTILIGSSGVGRTFTKEVIEAMASFNE-KPLILALSNPT 354 (496)
Q Consensus 317 ptvLIG~S~~~g~Ft~evv~~M~~~~~-rPIIFaLSNPt 354 (496)
+|++| ++... --++++++.++.... +-+|+.+.|.-
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 88777 44433 247899999986543 34677799975
No 186
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=82.12 E-value=0.64 Score=55.49 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+|++.||+++|||.-|+-++..|+.+ |+.-. ...+|.++|.+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 468899999999999999999999875 66211 13689999987
No 187
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.09 E-value=3.8 Score=42.48 Aligned_cols=123 Identities=15% Similarity=0.292 Sum_probs=76.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc--ccC-CCCCHHHHhcc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHE-PVNNLLDAVKV 314 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~--~~~-~~~~L~e~v~~ 314 (496)
||.|+|||..|..+|-+|+. .|+ -+.+.|+|.+-=..++..-+|.+. ..|.. ... ..++ .+.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998864 255 257999997411111111112221 12221 100 0134 466776
Q ss_pred cCCcEEEEccCCC---CCCC--------------HHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 010990 315 IKPTILIGSSGVG---RTFT--------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 375 (496)
Q Consensus 315 vkptvLIG~S~~~---g~Ft--------------~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~--G~ai~A 375 (496)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||. .+..--+++.++ =+-+|.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv---Dv~t~~~~k~sg~p~~rviG 142 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL---DIAVYIAATEFDYPANKVIG 142 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH---HHHHHHHHHHhCcChhheec
Confidence 89888665543 3 24 47788888999999999999994 666666666641 123566
Q ss_pred cCC
Q 010990 376 SGS 378 (496)
Q Consensus 376 sGs 378 (496)
||.
T Consensus 143 ~gt 145 (307)
T cd05290 143 TGT 145 (307)
T ss_pred ccc
Confidence 553
No 188
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.09 E-value=18 Score=35.90 Aligned_cols=95 Identities=12% Similarity=0.198 Sum_probs=49.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 317 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkp 317 (496)
||.|+|+|..|-.+++.|... |.. .+.+++.|+. . +........+. ......+..|+++. +
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~----~---~~~~~l~~~~~-~~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN----A---QIAARLAERFP-KVRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC----H---HHHHHHHHHcC-CceEeCCHHHHHHh--C
Confidence 699999999999999988653 542 2456666652 1 11111111110 00112456666654 5
Q ss_pred cEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010990 318 TILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 318 tvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
|++| ++..+.. -+++++... ..+..+|...+-++
T Consensus 63 DvVi-lav~p~~-~~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQI-AEEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHH-HHHHHHHhc-cCCCCEEEEECCCC
Confidence 5554 3332322 356665542 23445666666554
No 189
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.98 E-value=6 Score=40.90 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-.|++.=|+-.+.+++.+++|++|.+. -|.-+|.||.. .|. .+.+|.|+
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------ 189 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------ 189 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC------------
Confidence 345678888999999999999999999999764 68888888754 243 46666553
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-..+.++.|+.|+++
T Consensus 190 ------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 ------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1247788887 99999999999999999988
No 190
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=81.44 E-value=3.5 Score=41.43 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.|++.+++-.+...+..+++|+|+|.+|.+++..+.+ .| .+++++|+.
T Consensus 102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 3455556544455667899999999888888777754 24 368888763
No 191
>PRK06153 hypothetical protein; Provisional
Probab=81.42 E-value=2.9 Score=45.13 Aligned_cols=101 Identities=14% Similarity=0.225 Sum_probs=61.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-----CCCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-----EPVN 306 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-----~~~~ 306 (496)
.+|++.||+|+|+|..|--|+++|+.. |+ ++|.++|.+ .|... +|+..---|-.+. +...
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D-~Ve~S---NLnRQ~gaf~~~DvGk~~~KVe 236 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD-DFLQH---NAFRSPGAASIEELREAPKKVD 236 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC-Eeccc---ccccccccCCHhHcCCcchHHH
Confidence 568899999999999999999999875 76 789999997 33322 2332210111110 1112
Q ss_pred CHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEe-cCCCC
Q 010990 307 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA-LSNPT 354 (496)
Q Consensus 307 ~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFa-LSNPt 354 (496)
.+++.++..++.+ ......++++-+..+. +..+||- +=|..
T Consensus 237 vaa~rl~~in~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~ 278 (393)
T PRK06153 237 YFKSRYSNMRRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGS 278 (393)
T ss_pred HHHHHHHHhCCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHH
Confidence 3666666666654 2333456887776653 4456653 44443
No 192
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.41 E-value=15 Score=37.55 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 010990 222 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 279 (496)
Q Consensus 222 gll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~ 279 (496)
..+.|++..+. ..+++++|.|+|+.|...+.+.. + .|. ++++.+|+
T Consensus 157 ~a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~ 202 (343)
T PRK09880 157 VAIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeC
Confidence 33555554443 36789999999987766554433 2 364 56777765
No 193
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=81.31 E-value=3 Score=45.73 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.|++.+++-.+.++++.+++|+|+|.+|.+++..+.. .|. +++++|++
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 3677888888888999999999999888777777754 353 57777763
No 194
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.17 E-value=7.1 Score=40.60 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
-.-+|-+|++.=|+-.+.+++.+++|++|.+. -|.-+|.||.. .|.+. .-.+.+|.|+
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~------------- 194 (293)
T PRK14185 136 FVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR------------- 194 (293)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC-------------
Confidence 34578888899999999999999999999764 67778877753 23210 0235555543
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-..+.++.+++|+++
T Consensus 195 -----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 -----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788886 99999999999999999987
No 195
>PLN03139 formate dehydrogenase; Provisional
Probab=81.09 E-value=10 Score=40.79 Aligned_cols=189 Identities=15% Similarity=0.060 Sum_probs=107.0
Q ss_pred eEeeeCCCccHHHHHHHHcCCCceeecCCC---chhHHHHHHHHHHHHH--------------------hCCCcccceEE
Q 010990 184 IQFEDFANHNAFELLAKYGTTHLVFNDDIQ---GTASVVLAGVVAALKL--------------------IGGTLAEHRFL 240 (496)
Q Consensus 184 i~~EDf~~~~af~iL~~yr~~~~~FnDDiQ---GTa~V~LAgll~Alr~--------------------~g~~l~d~riv 240 (496)
|+.--.+..| ..+-.--+..|.+.|---- -.|=-+++-+|+.+|- .+..|.+.+|.
T Consensus 125 I~~~g~G~D~-iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVG 203 (386)
T PLN03139 125 LLTAGIGSDH-IDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVG 203 (386)
T ss_pred EEECCccccc-cCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEE
Confidence 5555555444 2222222468888885432 2344467777777762 13468999999
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEE
Q 010990 241 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 320 (496)
Q Consensus 241 ~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvL 320 (496)
|+|.|..|..+|+.+... |+ +++.+|+... . .+ ..+ .. ......+|.|+++. .|++
T Consensus 204 IVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~-~~---~~~-~~--g~~~~~~l~ell~~--sDvV 259 (386)
T PLN03139 204 TVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---D-PE---LEK-ET--GAKFEEDLDAMLPK--CDVV 259 (386)
T ss_pred EEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---c-hh---hHh-hc--CceecCCHHHHHhh--CCEE
Confidence 999999999999999653 65 4777887532 0 00 000 00 00112579999977 8988
Q ss_pred EEccCC-----CCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCc--ccCCeeeCcc
Q 010990 321 IGSSGV-----GRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPF--EYNGKVFVPG 393 (496)
Q Consensus 321 IG~S~~-----~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv--~~~G~~~~p~ 393 (496)
+=. .+ -+.|+++.+..|. +.-+++=.|+=.-.=|-.--+|+ ..|+.-.|..-=|.+- .-+. .--
T Consensus 260 ~l~-lPlt~~T~~li~~~~l~~mk---~ga~lIN~aRG~iVDe~AL~~AL--~sG~l~GAaLDV~~~EPlp~d~---pL~ 330 (386)
T PLN03139 260 VIN-TPLTEKTRGMFNKERIAKMK---KGVLIVNNARGAIMDTQAVADAC--SSGHIGGYGGDVWYPQPAPKDH---PWR 330 (386)
T ss_pred EEe-CCCCHHHHHHhCHHHHhhCC---CCeEEEECCCCchhhHHHHHHHH--HcCCceEEEEcCCCCCCCCCCC---hhh
Confidence 732 22 2579999999996 56677766653321222222333 3566555544322211 1011 011
Q ss_pred CcccccccchhhH
Q 010990 394 QANNAYIFPGFGL 406 (496)
Q Consensus 394 Q~NN~~iFPGigl 406 (496)
+..|+.+-|=++-
T Consensus 331 ~~pNvilTPHiag 343 (386)
T PLN03139 331 YMPNHAMTPHISG 343 (386)
T ss_pred cCCCeEEcccccc
Confidence 3457888887763
No 196
>PRK07680 late competence protein ComER; Validated
Probab=80.91 E-value=3.4 Score=41.39 Aligned_cols=98 Identities=12% Similarity=0.232 Sum_probs=58.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 317 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkp 317 (496)
+|.|+|+|..|..+|..|... |.- ...+++++|++ . +........+. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~---~~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----P---AKAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----H---HHHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 699999999999999988653 420 12467877764 1 11111111110 00112467777765 7
Q ss_pred cEEEEccCCCCCCCHHHHHHHHccC-CCceEEecCCCCC
Q 010990 318 TILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 355 (496)
Q Consensus 318 tvLIG~S~~~g~Ft~evv~~M~~~~-~rPIIFaLSNPt~ 355 (496)
|++| ++..+ ...+++++.+..+- +..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 8775 33333 34678888876543 4568999998763
No 197
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=80.29 E-value=16 Score=37.92 Aligned_cols=119 Identities=14% Similarity=0.223 Sum_probs=80.7
Q ss_pred CCCceeecCC---CchhHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcChHHHHHHHHH
Q 010990 203 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 255 (496)
Q Consensus 203 ~~~~~FnDDi---QGTa~V~LAgll~Alr~~------------------------g~~l~d~riv~~GAG~Ag~GiA~ll 255 (496)
..+.+.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 4666666422 335556777777777632 2468999999999999999999998
Q ss_pred HHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEc----cCCCCCCC
Q 010990 256 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 331 (496)
Q Consensus 256 ~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~Ft 331 (496)
.. | |+ +|+.+|+.+- .. + ..+ ...+|.|+++. .|+++=. ....+.|+
T Consensus 165 ~~-f----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 QA-F----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred hh-c----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 53 3 65 5888888521 10 0 011 12479999987 8988732 22236899
Q ss_pred HHHHHHHHccCCCceEEecCCC
Q 010990 332 KEVIEAMASFNEKPLILALSNP 353 (496)
Q Consensus 332 ~evv~~M~~~~~rPIIFaLSNP 353 (496)
++.++.|. +..++.=.|+-
T Consensus 216 ~~~~~~Mk---~~a~lIN~aRG 234 (311)
T PRK08410 216 YKELKLLK---DGAILINVGRG 234 (311)
T ss_pred HHHHHhCC---CCeEEEECCCc
Confidence 99999996 67787766664
No 198
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.27 E-value=6.9 Score=40.47 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=67.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 213 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 213 QGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
.+-.-+|-.|++.=|+-.+.+|+..++|++|.+. -|--+|.||.. .|. .+.+|+|+ |
T Consensus 135 ~~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~---T------- 192 (282)
T PRK14180 135 KCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF---T------- 192 (282)
T ss_pred CCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC---C-------
Confidence 4456678889999999999999999999999764 68888888753 243 46666653 1
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 292 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 292 ~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
++|.+.++. +|++|-..+.++.|++++++
T Consensus 193 --------------~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 193 --------------TDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred --------------CCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 246666776 99999999999999999887
No 199
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=80.17 E-value=11 Score=39.08 Aligned_cols=120 Identities=24% Similarity=0.351 Sum_probs=73.1
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc----cc--CC---CCC
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH--EP---VNN 307 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~----~~--~~---~~~ 307 (496)
||.|+|| |..|..+|..++. .|+. ..++++|++--+. .+...+.++.+ .. .. ..+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~-----~g~~-----~~v~lvd~~~~~~-----~l~~~~~dl~d~~~~~~~~~~i~~~~d 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAK-----EDVV-----KEINLISRPKSLE-----KLKGLRLDIYDALAAAGIDAEIKISSD 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCCC-----CEEEEEECccccc-----ccccccchhhhchhccCCCcEEEECCC
Confidence 7999998 9999999998865 3652 4799999852111 11112212111 10 01 134
Q ss_pred HHHHhcccCCcEEEEccCCCC--------------CCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccC--Cc
Q 010990 308 LLDAVKVIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GR 371 (496)
Q Consensus 308 L~e~v~~vkptvLIG~S~~~g--------------~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~--G~ 371 (496)
. +.+++ .|+.|=+.+.+. .+-+++++.|.+++...+|+--+||- .+..-.++++++ .+
T Consensus 67 ~-~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv---d~~t~~~~~~~g~~~~ 140 (309)
T cd05294 67 L-SDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV---DVMTYKALKESGFDKN 140 (309)
T ss_pred H-HHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCCHH
Confidence 3 45776 888876655321 23467788888899999999999995 444445554431 23
Q ss_pred EEEecCC
Q 010990 372 AIFASGS 378 (496)
Q Consensus 372 ai~AsGs 378 (496)
-+|++|.
T Consensus 141 ~viG~gt 147 (309)
T cd05294 141 RVFGLGT 147 (309)
T ss_pred HEeeccc
Confidence 3666664
No 200
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.16 E-value=7.6 Score=40.16 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 010990 216 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 294 (496)
Q Consensus 216 a~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 294 (496)
.-+|-.|++.=++-.+.+++.++++++|-+. -|.-+|.||.. .|. .+.+|+|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~A-------tVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RHA-------TVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4577888899999999999999999999764 67777777753 242 46666553
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 295 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 295 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-..+.++.+++++++
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1346677887 99999999999999999988
No 201
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.04 E-value=7.3 Score=40.37 Aligned_cols=84 Identities=26% Similarity=0.347 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GAG-~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
-.-+|-.|++.=|+-.+.+++..++|++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 134 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~------------- 188 (287)
T PRK14173 134 LEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK------------- 188 (287)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 3457888889999999999999999999975 468888888854 243 46666553
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.+++ +|++|-..+.++.+++++++
T Consensus 189 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 -----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788887 99999999999999999987
No 202
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=79.98 E-value=14 Score=38.44 Aligned_cols=168 Identities=13% Similarity=0.094 Sum_probs=94.4
Q ss_pred CCceeecC----CCchhHHHHHHHHHHHHHh----------------CCCcccceEEEeCcChHHHHHHHHHHHHHHHhc
Q 010990 204 THLVFNDD----IQGTASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQT 263 (496)
Q Consensus 204 ~~~~FnDD----iQGTa~V~LAgll~Alr~~----------------g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~ 263 (496)
.++++|-- -+..|--+++-+|+..|-. +..+.++++.|+|.|..|..+|+.+...
T Consensus 84 ~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af----- 158 (312)
T PRK15469 84 SVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW----- 158 (312)
T ss_pred CceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----
Confidence 55555431 1334555666666655422 2458899999999999999999999753
Q ss_pred CCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEccC----CCCCCCHHHHHHHH
Q 010990 264 KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMA 339 (496)
Q Consensus 264 G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evv~~M~ 339 (496)
|+ +++.+|+.. .. .+... .+ ....+|.|+++. +|+++=+-. .-+.|+++.++.|.
T Consensus 159 G~-------~V~~~~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk 217 (312)
T PRK15469 159 GF-------PLRCWSRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP 217 (312)
T ss_pred CC-------EEEEEeCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC
Confidence 65 477777631 11 11101 11 123578999987 888873211 12567888888885
Q ss_pred ccCCCceEEecCCCCCCCCCCHHHHh--cccCCcEEEecCCCCCCcccCCeeeCccCcccccccchhh
Q 010990 340 SFNEKPLILALSNPTSQSECTAEEAY--TWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFG 405 (496)
Q Consensus 340 ~~~~rPIIFaLSNPt~~~E~~peda~--~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGig 405 (496)
+..++.=.|+ .++--|+|+ +...|+.--|.--=|.+--.... ..-=+..|+++-|=++
T Consensus 218 ---~ga~lIN~aR----G~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~-~pl~~~~nvi~TPHia 277 (312)
T PRK15469 218 ---DGAYLLNLAR----GVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE-SPLWQHPRVAITPHVA 277 (312)
T ss_pred ---CCcEEEECCC----ccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC-ChhhcCCCeEECCcCC
Confidence 4567776665 344444443 23456544332222221111000 0012446888888776
No 203
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.83 E-value=7.9 Score=40.16 Aligned_cols=89 Identities=24% Similarity=0.365 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-.|++.=|+-.|.+++.+++|++|-+. -|.-+|.||.. .|... ...+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 445678888999999999999999999999764 67788877754 22210 1245655542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-..+.++.+++|+|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1347788887 99999999999999999998
No 204
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=79.82 E-value=7.1 Score=41.77 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=67.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 010990 213 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 291 (496)
Q Consensus 213 QGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l 291 (496)
.+-.-+|-.|++.=|+..+.+++.+++||+|-+. -|.-+|.||.. .|. .+.+|.|+
T Consensus 208 ~~f~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~----------- 264 (364)
T PLN02616 208 PLFVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR----------- 264 (364)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC-----------
Confidence 3455678888999999999999999999999764 57777777754 243 46777553
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 292 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 292 ~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-.-+.++.++.++|+
T Consensus 265 -------------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 -------------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred -------------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1357788887 99999999999999999998
No 205
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=79.39 E-value=7.1 Score=42.83 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=76.9
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHH-HH-HhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhc
Q 010990 237 HRFLFLGA-GEAGTGIAELIALE-IS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 313 (496)
Q Consensus 237 ~riv~~GA-G~Ag~GiA~ll~~~-~~-~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~ 313 (496)
.||.|.|| |..|..+|-.|+.. +. ..+|+ -.++.++|.+-=..++-.-+|.+-.-++.++..-..+--+..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 69999999 99999999988652 00 00133 1478899875222211111122222122221110123346677
Q ss_pred ccCCcEEEEccCCCCC--C------------CHHHHHHHHc-cCCCceEEecCCCCCCCCCCHHHHhcccCC--cEEEec
Q 010990 314 VIKPTILIGSSGVGRT--F------------TKEVIEAMAS-FNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFAS 376 (496)
Q Consensus 314 ~vkptvLIG~S~~~g~--F------------t~evv~~M~~-~~~rPIIFaLSNPt~~~E~~peda~~~t~G--~ai~As 376 (496)
+ .|+.|=+.+.+.. - =+++.+.+.+ .++.-||+-.||| ..+..--+++++.. +-+|.|
T Consensus 176 d--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP---vDv~t~v~~k~sg~~~~rViGt 250 (444)
T PLN00112 176 D--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP---CNTNALICLKNAPNIPAKNFHA 250 (444)
T ss_pred c--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc---HHHHHHHHHHHcCCCCcceEEe
Confidence 7 8988866665421 1 2467777778 5899999999999 46666667666522 335666
Q ss_pred CC
Q 010990 377 GS 378 (496)
Q Consensus 377 Gs 378 (496)
|.
T Consensus 251 gT 252 (444)
T PLN00112 251 LT 252 (444)
T ss_pred ec
Confidence 64
No 206
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=79.12 E-value=0.98 Score=49.66 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHH
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
+..++.||||+|||.||++-|.-|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34556699999999999999999984
No 207
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=79.11 E-value=3.2 Score=42.82 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=74.7
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEE
Q 010990 241 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 320 (496)
Q Consensus 241 ~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvL 320 (496)
|+|||..|..+|.+|+. .|+. ..+.++|.+-=..++-.-+|.+....+.+...-..+--+.+++ +|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l~-----~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGIA-----DEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998864 3662 5799999842112211111222221111111011223467777 9999
Q ss_pred EEccCCCCC--CC------------HHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCC--cEEEecCC
Q 010990 321 IGSSGVGRT--FT------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGS 378 (496)
Q Consensus 321 IG~S~~~g~--Ft------------~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G--~ai~AsGs 378 (496)
|=+.+.+.. -| +++.+.+.+++..-+|+-.|||. ++...-++++++= +-+|++|.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~~~sg~p~~~viG~gt 139 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV---DILTYVAWKLSGFPKNRVIGSGT 139 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHH---HHHHHHHHHHhCCCHHHEEeccc
Confidence 866665321 12 36778888899999999999995 5677777766521 23777764
No 208
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.69 E-value=10 Score=39.56 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~ 293 (496)
-.-+|-.|++.=|+-.|.+++.+++|++|.+. -|.-+|.||.. .|. .+.+|.|+
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~------------- 191 (297)
T PRK14186 137 LRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR------------- 191 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 34577888888899999999999999999764 68888888754 243 46666543
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.++. +|++|-..+.++.|++++++
T Consensus 192 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 -----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1347777887 99999999999999999988
No 209
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.41 E-value=3.2 Score=43.21 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=53.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc--ccCCC--cCCCchhchhhccccCCCCCHHHH
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSR--KDSLQHFKKPWAHEHEPVNNLLDA 311 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL--i~~~r--~~~l~~~k~~~a~~~~~~~~L~e~ 311 (496)
..||.|+|||+-|..+|..|.+. |- -.+|..|..-. +.+++ .+.+.. ...+........++.++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~-----g~------v~l~~~~~~~~~~i~~~~~~~~~l~~-~~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR-----GP------TLQWVRSAETADDINDNHRNSRYLGN-DVVLSDTLRATTDFAEA 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----CC------EEEEeCCHHHHHHHHhcCCCcccCCC-CcccCCCeEEECCHHHH
Confidence 36899999999999999988653 41 23554433211 00110 001110 00010000112567777
Q ss_pred hcccCCcEEEEccCCCCCCCHHHHHHHHccC-CCceEEecCCCC
Q 010990 312 VKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 354 (496)
Q Consensus 312 v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~-~rPIIFaLSNPt 354 (496)
++. +|++| ++.+. -+.+++++.+..+- ++-+|..++|--
T Consensus 75 ~~~--aDlVi-lavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 75 ANC--ADVVV-MGVPS-HGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred Hhc--CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 765 66544 33322 36888888887543 333566777754
No 210
>PRK07877 hypothetical protein; Provisional
Probab=78.13 E-value=5.4 Score=46.21 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=67.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch----------hchhhccc
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----------FKKPWAHE 301 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~----------~k~~~a~~ 301 (496)
.+|++.||+|+|+| -|..+|..|+.+ |+ ..+|.++|.+=+ ..+ +|+. .|..-|+.
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~v-e~s---NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTL-ELS---NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEE-ccc---ccccccCChhhcccHHHHHHHH
Confidence 46889999999998 898999888765 63 268999998733 222 2333 22222211
Q ss_pred -----cCC---------C--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecC
Q 010990 302 -----HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 351 (496)
Q Consensus 302 -----~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLS 351 (496)
.+. + .++.+.+++ .|++|-+.-. .=++-++...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 011 1 256666665 8888877663 23677788888888899999875
No 211
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=77.94 E-value=2.5 Score=39.27 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=21.0
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 240 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 240 v~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+|+|||.||+..|-.|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999988755 376 448999987
No 212
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=77.92 E-value=2.1 Score=44.14 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++|.+.||+++|+|..|.-||..|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 458899999999999999999999875 87 899999997
No 213
>PRK06487 glycerate dehydrogenase; Provisional
Probab=77.77 E-value=48 Score=34.42 Aligned_cols=188 Identities=16% Similarity=0.108 Sum_probs=107.5
Q ss_pred CCCceeecCC---CchhHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcChHHHHHHHHH
Q 010990 203 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 255 (496)
Q Consensus 203 ~~~~~FnDDi---QGTa~V~LAgll~Alr~~------------------------g~~l~d~riv~~GAG~Ag~GiA~ll 255 (496)
..+.+.|--- +.+|=-+++.+|+.+|-. +..|.++++.|+|.|..|-.+|+.+
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 4666666422 345556777777766532 2358899999999999999999998
Q ss_pred HHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEc----cCCCCCCC
Q 010990 256 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 331 (496)
Q Consensus 256 ~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~Ft 331 (496)
.. | |+ +++.+|+.+ ... .+ ...+|.|+++. .|+++=. ....+.|+
T Consensus 168 ~~-f----gm-------~V~~~~~~~-----~~~--------~~----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 EA-F----GM-------RVLIGQLPG-----RPA--------RP----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred hh-C----CC-------EEEEECCCC-----Ccc--------cc----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 53 2 65 577777642 100 00 12379999987 8988732 22247899
Q ss_pred HHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCC--CCcccCCeeeCccCcccccccchhhHHHH
Q 010990 332 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLV 409 (496)
Q Consensus 332 ~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf--~pv~~~G~~~~p~Q~NN~~iFPGiglG~l 409 (496)
++.+..|. +..++.=.|+=.---|-.--+|+ .+|+.--|.=-=| +|.. .+....--+..|+++-|=++-...
T Consensus 217 ~~~~~~mk---~ga~lIN~aRG~vVde~AL~~AL--~~g~i~gAaLDVf~~EP~~-~~~pl~~~~~pnvilTPHia~~t~ 290 (317)
T PRK06487 217 ARELALMK---PGALLINTARGGLVDEQALADAL--RSGHLGGAATDVLSVEPPV-NGNPLLAPDIPRLIVTPHSAWGSR 290 (317)
T ss_pred HHHHhcCC---CCeEEEECCCccccCHHHHHHHH--HcCCeeEEEeecCCCCCCC-CCCchhhcCCCCEEECCccccCCH
Confidence 99999996 66777766664322222222333 3566543321111 1111 111111003568889898873222
Q ss_pred HhCCcccCHHHHHHHHHHHHhcc
Q 010990 410 ISGAIRVHDDMLLAASEALAKQV 432 (496)
Q Consensus 410 ~~~a~~itd~m~~aAA~aLA~~v 432 (496)
.-...|...+++.|....
T Consensus 291 -----e~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 291 -----EARQRIVGQLAENARAFF 308 (317)
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 223344555555555444
No 214
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=77.66 E-value=18 Score=37.84 Aligned_cols=122 Identities=12% Similarity=0.195 Sum_probs=75.6
Q ss_pred CCCceeecCC---CchhHHHHHHHHHHHHH---------------------hCCCcccceEEEeCcChHHHHHHHHHHHH
Q 010990 203 TTHLVFNDDI---QGTASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIALE 258 (496)
Q Consensus 203 ~~~~~FnDDi---QGTa~V~LAgll~Alr~---------------------~g~~l~d~riv~~GAG~Ag~GiA~ll~~~ 258 (496)
..+++.|--- ..+|=-+++.+|+.+|- .|..|.++++.|+|.|..|..+|+.+..+
T Consensus 88 ~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~ 167 (323)
T PRK15409 88 RKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFG 167 (323)
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhc
Confidence 4555555332 23445566777766662 24468999999999999999999987523
Q ss_pred HHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEc----cCCCCCCCHHH
Q 010990 259 ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEV 334 (496)
Q Consensus 259 ~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~Ft~ev 334 (496)
+ |+ ++...|+.. . .+ ....+ .....+|.|+++. .|+++=. ....+.|+++.
T Consensus 168 f----gm-------~V~~~~~~~----~-~~----~~~~~---~~~~~~l~ell~~--sDvv~lh~plt~~T~~li~~~~ 222 (323)
T PRK15409 168 F----NM-------PILYNARRH----H-KE----AEERF---NARYCDLDTLLQE--SDFVCIILPLTDETHHLFGAEQ 222 (323)
T ss_pred C----CC-------EEEEECCCC----c-hh----hHHhc---CcEecCHHHHHHh--CCEEEEeCCCChHHhhccCHHH
Confidence 2 54 455566531 0 00 00011 0112479999987 8887631 11126899999
Q ss_pred HHHHHccCCCceEEecCC
Q 010990 335 IEAMASFNEKPLILALSN 352 (496)
Q Consensus 335 v~~M~~~~~rPIIFaLSN 352 (496)
++.|. +.-++.=.|+
T Consensus 223 l~~mk---~ga~lIN~aR 237 (323)
T PRK15409 223 FAKMK---SSAIFINAGR 237 (323)
T ss_pred HhcCC---CCeEEEECCC
Confidence 99996 5667776665
No 215
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.63 E-value=10 Score=39.58 Aligned_cols=87 Identities=14% Similarity=0.274 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 010990 216 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 294 (496)
Q Consensus 216 a~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 294 (496)
.-+|-.|++.=|+-.+.+++.++++++|.+. -|.-+|.||.. .|.. ....+.+|.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQ-----KADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhc-----CccC---CCCEEEEeCCC--------------
Confidence 4578888899999999999999999999764 68888888753 1110 01245656543
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 295 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 295 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1347788887 99999999999999999998
No 216
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=77.49 E-value=5 Score=41.20 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=73.7
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-CcccCCCcCCCchhchhhcccc-CCCCCHHHHhcccC
Q 010990 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 316 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~-GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~e~v~~vk 316 (496)
|.|+|||..|..+|-.|+. .|+. ..+.++|.+ .++. +-..+|.+....+.... ...++ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~-g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAK-GDALDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHH-HHHHhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5799999999999876654 3663 579999973 1111 11112333322221100 01134 456776
Q ss_pred CcEEEEccCCC---CC-----------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc--CCcEEEecCC
Q 010990 317 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 378 (496)
Q Consensus 317 ptvLIG~S~~~---g~-----------Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t--~G~ai~AsGs 378 (496)
.|++|=+.+.+ |- .=+++.+.+.++++.-+|+=.|||. ++...-+.+++ +-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 88887554433 10 1246777888899999999999995 67777666653 1234677654
No 217
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=77.33 E-value=8.8 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHH
Q 010990 236 EHRFLFLGAGEAGTGIAELIALE 258 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~ 258 (496)
-.+|||.|+|..|.|-++.+...
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~~~l 225 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIFKLL 225 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHHhhc
Confidence 57999999999999999987643
No 218
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=77.06 E-value=11 Score=43.01 Aligned_cols=131 Identities=16% Similarity=0.180 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHH-hhCCCeeeEeeeCCCc----cHHHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCccc
Q 010990 162 EYAELLDEFMSAVKQ-NYGEKVLIQFEDFANH----NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAE 236 (496)
Q Consensus 162 ~y~~~vdefv~av~~-~fGp~~li~~EDf~~~----~af~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d 236 (496)
.|.+.|.|.++.+.+ .| .||.+.. =--.+++||..+|--|+-... .++.|-.- .++
T Consensus 69 ~y~~~V~Eli~~L~~nGF-------VrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF~~--qR~ 129 (637)
T TIGR03693 69 PYQKRVFEIGEILYKNGF-------VRDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKFEL--SRN 129 (637)
T ss_pred HHHHHHHHHHHHHHhCCc-------eeecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhhhh--hhc
Confidence 444444555555544 33 4676432 123478999877665544322 12233222 289
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-c----------CCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H----------EPV 305 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~----------~~~ 305 (496)
.||+++|.|..|.-+.-.|+. .|+ .+|-.+|.+=. ..+. +.+.+. .+-|++ . ...
T Consensus 130 akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~~vd~D~v-~SNl-nRIgEl-~e~A~~~n~~v~v~~i~~~~~ 195 (637)
T TIGR03693 130 AKILAAGSGDFLTKLVRSLID-----SGF------PRFHAIVTDAE-EHAL-DRIHEL-AEIAEETDDALLVQEIDFAED 195 (637)
T ss_pred ccEEEEecCchHHHHHHHHHh-----cCC------CcEEEEecccc-chhh-hHHHHH-HHHHHHhCCCCceEeccCCcc
Confidence 999999999988777766655 487 68888866534 2211 111122 334433 1 112
Q ss_pred CCHHHHhcccCCcEEEEccCCC
Q 010990 306 NNLLDAVKVIKPTILIGSSGVG 327 (496)
Q Consensus 306 ~~L~e~v~~vkptvLIG~S~~~ 327 (496)
.++.++++. .|++|=+|..+
T Consensus 196 ~dl~ev~~~--~DiVi~vsDdy 215 (637)
T TIGR03693 196 QHLHEAFEP--ADWVLYVSDNG 215 (637)
T ss_pred hhHHHhhcC--CcEEEEECCCC
Confidence 478888876 68888887766
No 219
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=77.00 E-value=19 Score=39.94 Aligned_cols=37 Identities=22% Similarity=0.076 Sum_probs=28.9
Q ss_pred eCccCcccccccchhhHHHHHhCCcccCHHHHHHHHH
Q 010990 390 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 426 (496)
Q Consensus 390 ~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~ 426 (496)
..||..+|-+.+|.+.-+..+...--++.+.+.++.+
T Consensus 185 d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3578899999999888888887776677777777654
No 220
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=76.96 E-value=4.9 Score=32.57 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=29.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 284 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~ 284 (496)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999998552 4 6899999887766
No 221
>PRK13938 phosphoheptose isomerase; Provisional
Probab=76.95 E-value=8.3 Score=37.57 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=50.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhc
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 313 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~ee-A~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~ 313 (496)
.+.||.++|.|..| .+|..+...|.. +++.+- +-..+-++.....++.- .+ -..+-..|++. +.-.+
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~-~n-d~~~~~~~~~~------~~~~~- 111 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAV-AN-DYDYDTVFARA------LEGSA- 111 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHh-hc-cccHHHHHHHH------HHhcC-
Confidence 56899999999998 677777766532 221100 00112222211111100 00 01122233322 22222
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHH--ccCCCceEE
Q 010990 314 VIKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLIL 348 (496)
Q Consensus 314 ~vkptvLIG~S~~~g~Ft~evv~~M~--~~~~rPIIF 348 (496)
-+-|++|+.|..|. |+++++.+. +...-|+|.
T Consensus 112 -~~~DllI~iS~SG~--t~~vi~a~~~Ak~~G~~vI~ 145 (196)
T PRK13938 112 -RPGDTLFAISTSGN--SMSVLRAAKTARELGVTVVA 145 (196)
T ss_pred -CCCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEE
Confidence 25899999999885 999999884 333344444
No 222
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=76.79 E-value=15 Score=38.19 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=65.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc---CCCCCHHHH
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 311 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~e~ 311 (496)
.-.++.|+|+|.-|-.-++.+... . . -++++++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 357899999999876655554331 1 2 2789988874 222 222222222111 224789999
Q ss_pred hcccCCcEEEEcc-CCCCCCCHHHHHHHHccCCCceEEecCCCC-CCCCCCHHHH
Q 010990 312 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 364 (496)
Q Consensus 312 v~~vkptvLIG~S-~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt-~~~E~~peda 364 (496)
+++ .|++|-+. +....|..++++ +..-|-++.-.+ .+.|+.++-.
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~l 236 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEIL 236 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHHH
Confidence 986 99998654 323467777774 456788887544 3789998754
No 223
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=76.56 E-value=12 Score=38.06 Aligned_cols=93 Identities=14% Similarity=0.191 Sum_probs=55.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCCCCCHHHHhcccC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIK 316 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~vk 316 (496)
||-|+|.|..|..+|+-|... |. +++++|++. .+ .. ++.+. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~----~~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA---VD----VAGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHHhCC
Confidence 689999999999999998652 53 477777641 11 11 12111 122357778877643
Q ss_pred -CcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCC
Q 010990 317 -PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 354 (496)
Q Consensus 317 -ptvLIG~S~~~g~Ft~evv~~M~~~-~~rPIIFaLSNPt 354 (496)
+|++|= +-+.....++++..+... .+..+|.=+|+-.
T Consensus 59 ~advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 566653 222323566776665433 3567888887744
No 224
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=76.21 E-value=13 Score=38.09 Aligned_cols=106 Identities=13% Similarity=0.226 Sum_probs=59.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 315 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G-~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v 315 (496)
.||.|+|+|..|-.|+.-|+.. | ++ ..+|++.|+. .+........|--. ...+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~-------~e~~~~l~~~~g~~--~~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS-------EEKRAALAAEYGVV--TTTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC-------HHHHHHHHHHcCCc--ccCcHHHHHhh-
Confidence 5899999999999988888764 5 32 3678877664 11111233333211 13455566654
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 369 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~ 369 (496)
.|+++ ++-.|. .=++|++.+....+..+|..+.=. ++-++..+|.+
T Consensus 63 -advv~-LavKPq-~~~~vl~~l~~~~~~~lvISiaAG-----v~~~~l~~~l~ 108 (266)
T COG0345 63 -ADVVF-LAVKPQ-DLEEVLSKLKPLTKDKLVISIAAG-----VSIETLERLLG 108 (266)
T ss_pred -CCEEE-EEeChH-hHHHHHHHhhcccCCCEEEEEeCC-----CCHHHHHHHcC
Confidence 66666 444442 234666666544455556555433 34455555543
No 225
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=76.19 E-value=43 Score=37.32 Aligned_cols=206 Identities=14% Similarity=0.119 Sum_probs=116.1
Q ss_pred CCCceeecCC---CchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHH
Q 010990 203 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 261 (496)
Q Consensus 203 ~~~~~FnDDi---QGTa~V~LAgll~Alr~------------------~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~ 261 (496)
..+++.|-.- +-+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4666666432 22455567777777663 23458899999999999999999998643
Q ss_pred hcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEccC----CCCCCCHHHHHH
Q 010990 262 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEA 337 (496)
Q Consensus 262 ~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evv~~ 337 (496)
|+ +++.+|+.. .+ +... .+ .-...+|.|+++. .|+++=.-. ..+.|+++.+..
T Consensus 163 --G~-------~V~~~d~~~----~~-~~~~----~~---g~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI----SP-ERAA----QL---GVELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC----Ch-hHHH----hc---CCEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 65 588888741 11 0000 00 0011268899886 888764321 136899999999
Q ss_pred HHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccC
Q 010990 338 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 417 (496)
Q Consensus 338 M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~it 417 (496)
|. +..++.=.|+-.---|..--+|++ .|+.--|.=-=|.+--..... --+..|+.+-|=+|-....+ .
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~p--L~~~~nvilTPHia~~t~e~-----~ 287 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPTDSP--LFELPNVVVTPHLGASTAEA-----Q 287 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCCCch--hhcCCCeeEcCccccchHHH-----H
Confidence 96 677888777755333333334443 466543311111100000111 12345888999877433322 2
Q ss_pred HHHHHHHHHHHHhccccccCCCCcccCCC
Q 010990 418 DDMLLAASEALAKQVTEENFEKGLIYPPF 446 (496)
Q Consensus 418 d~m~~aAA~aLA~~v~~e~l~~g~l~P~~ 446 (496)
..|...+++.+......+.+..-.=+|.+
T Consensus 288 ~~~~~~~~~ni~~~~~g~~~~~~vn~~~~ 316 (526)
T PRK13581 288 ENVAIQVAEQVIDALRGGPVPNAVNLPSI 316 (526)
T ss_pred HHHHHHHHHHHHHHHcCCCcCceeeCCCC
Confidence 44555566666665544333222224544
No 226
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=76.18 E-value=3.3 Score=43.27 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=29.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999876 77 799999986
No 227
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=76.17 E-value=5.1 Score=43.88 Aligned_cols=120 Identities=18% Similarity=0.327 Sum_probs=78.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-CC-----CCCH
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-----VNNL 308 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~~-----~~~L 308 (496)
+..||+|+||||. ...+++...+.+.+.++. +.|||+|-+ .+|.+.....-+.+.+.. .+ ..++
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 4569999999998 567888888877777764 789999974 444221111222333221 11 2589
Q ss_pred HHHhcccCCcEEEEcc--------------------------CCCCCCC--------HHHHHHHHccCCCceEEecCCCC
Q 010990 309 LDAVKVIKPTILIGSS--------------------------GVGRTFT--------KEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 309 ~e~v~~vkptvLIG~S--------------------------~~~g~Ft--------~evv~~M~~~~~rPIIFaLSNPt 354 (496)
.+|+++ +|..|=.- ++||.|. -|+++.|-+.|+.--++=-+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999988 66655322 2233322 38899999999999999999997
Q ss_pred CCCCCCHHHHhcccC
Q 010990 355 SQSECTAEEAYTWSK 369 (496)
Q Consensus 355 ~~~E~~peda~~~t~ 369 (496)
+++|= -+++++.
T Consensus 150 --~~vTe-Av~r~~~ 161 (442)
T COG1486 150 --AIVTE-AVRRLYP 161 (442)
T ss_pred --HHHHH-HHHHhCC
Confidence 56553 3445544
No 228
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=76.13 E-value=19 Score=38.03 Aligned_cols=137 Identities=18% Similarity=0.234 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceee-cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh
Q 010990 168 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE 246 (496)
Q Consensus 168 defv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~Fn-DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~ 246 (496)
.+.++.+ .+| .++++ +-.++... .+.+.+| ..+||+| +|-.---+=+|+=++.-.+..|+++++.||+++|-+.
T Consensus 92 ~DTarvl-s~y-~D~iv-~R~~~~~~-~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~ 166 (334)
T PRK01713 92 KDTARVL-GRM-YDAIE-YRGFKQSI-VNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDAR 166 (334)
T ss_pred HHHHHHH-HHh-CCEEE-EEcCchHH-HHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCc
Confidence 3343333 446 44444 44544333 3333343 5799999 3444455677888888777777789999999999975
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC----CCCCHHHHhcccCCcEEEE
Q 010990 247 AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE----PVNNLLDAVKVIKPTILIG 322 (496)
Q Consensus 247 Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~----~~~~L~e~v~~vkptvLIG 322 (496)
- ++++-++.++.+ -|+ ++.++-.+++.-.. ..-+.-+.+++... ...++.+++++ +||+.-
T Consensus 167 ~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVyt 231 (334)
T PRK01713 167 N--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA---SLVEMCEKFAKESGARITVTDDIDKAVKG--VDFVHT 231 (334)
T ss_pred c--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEE
Confidence 3 478877777665 465 68888887773321 01111123433211 23789999998 999987
Q ss_pred cc
Q 010990 323 SS 324 (496)
Q Consensus 323 ~S 324 (496)
.+
T Consensus 232 ~~ 233 (334)
T PRK01713 232 DV 233 (334)
T ss_pred cc
Confidence 53
No 229
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=75.75 E-value=60 Score=33.29 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=23.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 279 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~ 279 (496)
..++++|+|+|..|+..+.++... .|. .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~----~g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQI----YPE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh----cCC------CcEEEEeC
Confidence 467999999998776665555432 132 46887775
No 230
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=75.55 E-value=3.6 Score=41.18 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 77 789999998
No 231
>PRK07340 ornithine cyclodeaminase; Validated
Probab=75.50 E-value=20 Score=36.95 Aligned_cols=105 Identities=10% Similarity=0.100 Sum_probs=63.7
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCC--CCCHHHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 311 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~--~~~L~e~ 311 (496)
....++.|+|+|..|...++.+... .+. ++|+++|+. ..+ ...+...+.+.... ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3567999999999998888887653 244 578888874 221 12222222111111 3578899
Q ss_pred hcccCCcEEEEccCCC-CCCCHHHHHHHHccCCCceEEecCCCC-CCCCCCHHHH
Q 010990 312 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 364 (496)
Q Consensus 312 v~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~rPIIFaLSNPt-~~~E~~peda 364 (496)
+++ .|++|-+.... ..|+.+ + -+.--|-++.-.+ .+.|+.+|-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~~-~------~~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPEA-A------RAGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCcc-C------CCCCEEEecCCCCCCcccCCHHHH
Confidence 985 99999775543 345442 2 1444666665422 3678887643
No 232
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=75.30 E-value=3.5 Score=40.88 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=26.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 283 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi 283 (496)
-+|+|+|||.||+..|..|.. .|+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR-----AGI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH-----TTC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHh-----ccc-------ccccchhcccc
Confidence 479999999999999998876 376 48888886443
No 233
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.13 E-value=8.2 Score=41.09 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=28.4
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++..+++|.|+|..|.++|+.|.+ .|. ++++.|++
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G~-------~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LGA-------NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 567799999999999999988875 364 58888864
No 234
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=74.98 E-value=4.3 Score=42.66 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=28.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+..||||+|+|.||+..|+.|... |. ..+|.++|+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 457899999999999999998653 43 2468888775
No 235
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=74.86 E-value=4.3 Score=38.60 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=52.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc--------------C
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--------------E 303 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~--------------~ 303 (496)
||.|+|||..|.|||-+++.+ |. ++.++|.+---...-.+.+......+.+.. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 689999999999999999764 64 788998852211000000111000111100 1
Q ss_pred CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 304 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 304 ~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
-..+|.+++ + .|..|=+-.-.--..+++.+.+.+.+..=.||
T Consensus 69 ~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~il 110 (180)
T PF02737_consen 69 FTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDEICPPDTIL 110 (180)
T ss_dssp EESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEE
T ss_pred cccCHHHHh-h--hheehhhccccHHHHHHHHHHHHHHhCCCceE
Confidence 124677766 4 88888654432235678888888777544444
No 236
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=74.86 E-value=4.6 Score=36.02 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=50.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 316 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 316 (496)
||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.=-..+. ++.+.-.......+-..+|.++++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~-- 67 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE-- 67 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH--
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc--
Confidence 8999999 99999999998762 344 3366777775111111 1111000000001112578888877
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCceEEec
Q 010990 317 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 350 (496)
Q Consensus 317 ptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaL 350 (496)
+||+|=.|.+. -..+.++...++ ..|+|..=
T Consensus 68 ~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViGT 98 (124)
T PF01113_consen 68 ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIGT 98 (124)
T ss_dssp -SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE-
T ss_pred CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEEC
Confidence 88888777533 244555555444 45555543
No 237
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=74.84 E-value=6.4 Score=40.31 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=57.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc-----hhchhhcccc-CCCCCHHH
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-----HFKKPWAHEH-EPVNNLLD 310 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~-----~~k~~~a~~~-~~~~~L~e 310 (496)
.||.|+|+|..|..+|..|... | .+++++|+..-...-+...+. ..+..+.... ....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999999763 5 368888874211000000010 0000000000 001233 4
Q ss_pred HhcccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCCC
Q 010990 311 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 355 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~-~~rPIIFaLSNPt~ 355 (496)
+++ ++|++|=+-... ..+++++.+... .+..+|..++|...
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 454 488877443322 357888888764 45578888899764
No 238
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=74.80 E-value=13 Score=39.97 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc
Q 010990 222 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 301 (496)
Q Consensus 222 gll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~ 301 (496)
-+..++.-....|...|++|+|-+.-.+++++.|.+. .|+. +..+-+. +.++ +...+..+.+..+
T Consensus 276 ~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~-------~v~v~t~---~~~~-~~~~~~~~~l~~~ 340 (427)
T PRK02842 276 RARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGME-------LVEVGTP---YLNR-RFLAAELALLPDG 340 (427)
T ss_pred HHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCE-------EEEeCCC---CCCH-HHHHHHHHhccCC
Confidence 3445566666778888999999998899999998863 2762 2212111 0111 1011111111111
Q ss_pred -----cCCCCCHHHHhcccCCcEEEEcc
Q 010990 302 -----HEPVNNLLDAVKVIKPTILIGSS 324 (496)
Q Consensus 302 -----~~~~~~L~e~v~~vkptvLIG~S 324 (496)
......+.+.|+..|||.|||-|
T Consensus 341 ~~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 341 VRIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred CEEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 11113458889999999999976
No 239
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=74.73 E-value=11 Score=39.88 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchh
Q 010990 218 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 297 (496)
Q Consensus 218 V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~ 297 (496)
.+.|+.++|=++..+.. -++.|+|+|.-+-.. ++++.+..++ ++|++.|++ .+....+...
T Consensus 114 TaAasavAa~~LA~~da--~~laiIGaG~qA~~q----l~a~~~v~~~------~~I~i~~r~-------~~~~e~~a~~ 174 (330)
T COG2423 114 TAAASAVAAKYLARKDA--STLAIIGAGAQARTQ----LEALKAVRDI------REIRVYSRD-------PEAAEAFAAR 174 (330)
T ss_pred HHHHHHHHHHHhccCCC--cEEEEECCcHHHHHH----HHHHHhhCCc------cEEEEEcCC-------HHHHHHHHHH
Confidence 45667788777776643 478999999765444 4444433344 677777764 1112222222
Q ss_pred hccc----cCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHccCCCceEEec-CCCCCCCCCCHHHHhc
Q 010990 298 WAHE----HEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEAYT 366 (496)
Q Consensus 298 ~a~~----~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~rPIIFaL-SNPt~~~E~~peda~~ 366 (496)
+.+. .....|+++++++ +|+++.+.... ..|..++|+ +.=-|-++ ||+-.+-|+.+|-..+
T Consensus 175 l~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~------~G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 175 LRKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLK------PGTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HHhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcC------CCcEEEecCCCCcccccCCHHHHHh
Confidence 2222 2345799999998 99999874432 477888877 23334444 5666789999987654
No 240
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=74.70 E-value=4 Score=40.54 Aligned_cols=39 Identities=33% Similarity=0.505 Sum_probs=33.7
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 231 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 231 g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
-++|++-|++++|+|.-|..++..|+.+ |+ ++++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 3578899999999999999999999875 76 669999987
No 241
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=74.66 E-value=11 Score=40.02 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 010990 214 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 292 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~ 292 (496)
+-.-+|-.|++.=|+-.+.+++.+++|++|-+. -|.-+|.||.. +|. .+.+|.|+ |
T Consensus 192 ~~~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~---T-------- 248 (345)
T PLN02897 192 LFVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF---T-------- 248 (345)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC---C--------
Confidence 445678888899999999999999999999754 67778777754 243 35666553 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010990 293 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 336 (496)
Q Consensus 293 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~ 336 (496)
.+|.+.++. +|++|-..+.++.++.++|+
T Consensus 249 -------------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 249 -------------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 346777887 99999999999999999998
No 242
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=74.65 E-value=5.1 Score=41.47 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=54.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc---ccCCCCCHHHHh
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAV 312 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~---~~~~~~~L~e~v 312 (496)
-.++.|+|+|.-|..-++.+... .++ ++|+++|+. ..+ ...+...+.+ +.....++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 46999999999988887777654 244 789988874 111 2223333322 111236899999
Q ss_pred cccCCcEEEEccCCCC---CCCHHHHHHHHccCCCceEEecCCCC-CCCCCCHHHH
Q 010990 313 KVIKPTILIGSSGVGR---TFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 364 (496)
Q Consensus 313 ~~vkptvLIG~S~~~g---~Ft~evv~~M~~~~~rPIIFaLSNPt-~~~E~~peda 364 (496)
+. +|+++.+..... .|+.++++ +.-.|-++.--+ .+.|+.++-.
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~~ 238 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDELL 238 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHHh
Confidence 98 999998754332 57777666 344666665422 2457766543
No 243
>PRK06932 glycerate dehydrogenase; Provisional
Probab=74.18 E-value=14 Score=38.35 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=82.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHH
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 311 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~ 311 (496)
..|.++++.|+|-|..|-.+|+++.. | |+ +++.+|+..- ... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~-f----g~-------~V~~~~~~~~------~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQA-L----GM-------KVLYAEHKGA------SVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhc-C----CC-------EEEEECCCcc------ccc---c-------cccCCHHHH
Confidence 46899999999999999999998853 2 65 4666665310 000 0 012479999
Q ss_pred hcccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCC--Cccc
Q 010990 312 VKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFD--PFEY 385 (496)
Q Consensus 312 v~~vkptvLIG~----S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~--pv~~ 385 (496)
++. .|+++=. ....|.|+++.+..|. +..++.=.|+-.---|..--+|++ +|+.--|.--=|. |...
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aRG~~Vde~AL~~aL~--~g~i~gAaLDV~~~EP~~~ 267 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGRGPLVDEQALLDALE--NGKIAGAALDVLVKEPPEK 267 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCCccccCHHHHHHHHH--cCCccEEEEecCCCCCCCC
Confidence 987 9998832 2224789999999996 677877776643222333333433 5665433222121 1111
Q ss_pred CCeeeC-ccCcccccccchhhH
Q 010990 386 NGKVFV-PGQANNAYIFPGFGL 406 (496)
Q Consensus 386 ~G~~~~-p~Q~NN~~iFPGigl 406 (496)
+..-.. --+..|+++-|=++-
T Consensus 268 ~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 268 DNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CChhhHhhcCCCCEEECCcccc
Confidence 110000 013568888887764
No 244
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=74.14 E-value=26 Score=37.28 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=94.6
Q ss_pred chhHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 010990 214 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 273 (496)
Q Consensus 214 GTa~V~LAgll~Alr~~--------------------g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~ 273 (496)
-||-++++-+|.++|-. |..+.++||.|+|.|+.|..||+.|... | ..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 47778888888888743 3458899999999999999999999763 2 12
Q ss_pred EEEEcCCCcccCCCcC-CCchhchhhccccCCCCCHHHHhcccCCcEEEEccCC----CCCCCHHHHHHHHccCCCceEE
Q 010990 274 ICLVDSKGLIVSSRKD-SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGV----GRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 274 i~~vD~~GLi~~~r~~-~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~----~g~Ft~evv~~M~~~~~rPIIF 348 (496)
|. +.+|.. .....+..+++ .-++.|...+ .|+++=..-- .++|+++.+..|. +.=+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 333311 11223334443 2456676665 8888744221 2589999999996 566777
Q ss_pred ecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCC-ee-eCccCcccccccchhhHHHHHhC
Q 010990 349 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNG-KV-FVPGQANNAYIFPGFGLGLVISG 412 (496)
Q Consensus 349 aLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G-~~-~~p~Q~NN~~iFPGiglG~l~~~ 412 (496)
-.++=.--=|-.--||.+ .|+ |...|- +|.-++ .. ..-.-.-|+-+-|=||-..+.++
T Consensus 251 N~aRG~iide~~l~eaL~--sG~-i~~aGl---DVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~ 310 (336)
T KOG0069|consen 251 NTARGAIIDEEALVEALK--SGK-IAGAGL---DVFEPEPPVDHPLLTLDNVVILPHIGSATLETR 310 (336)
T ss_pred eccccccccHHHHHHHHh--cCC-cccccc---cccCCCCCCCcchhcccceeEecccccCcHHHH
Confidence 666643222222223332 243 344441 121100 01 11123446777787777666655
No 245
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=73.89 E-value=1.1e+02 Score=34.24 Aligned_cols=195 Identities=17% Similarity=0.134 Sum_probs=109.6
Q ss_pred CCCceeecCC---CchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHH
Q 010990 203 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 261 (496)
Q Consensus 203 ~~~~~FnDDi---QGTa~V~LAgll~Alr~------------------~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~ 261 (496)
..+++.|--- +.+|=-+++.+|+..|- .|..|.++++.|+|-|..|-.+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4666666432 23455567777766652 24568999999999999999999998642
Q ss_pred hcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEc-c---CCCCCCCHHHHHH
Q 010990 262 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS-S---GVGRTFTKEVIEA 337 (496)
Q Consensus 262 ~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~-S---~~~g~Ft~evv~~ 337 (496)
|+ +++.+|+.. .... . ..+ ......+|.|+++. .|+++=. . ...+.|+++.+..
T Consensus 161 --G~-------~V~~~d~~~--~~~~------~-~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 161 --GM-------KVLAYDPYI--SPER------A-EQL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred --CC-------EEEEECCCC--ChhH------H-Hhc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 64 588888741 1100 0 001 00112479999886 8887722 1 2235789999998
Q ss_pred HHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCeeeCccCcccccccchhhHHHHHhCCcccC
Q 010990 338 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 417 (496)
Q Consensus 338 M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~it 417 (496)
|. +..++.=.|+-.---|-.--+|++ .|+.-.|.=-=|.+--.... .--+..|+.+-|=+|-....+ .
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t~e~-----~ 286 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGASTREA-----Q 286 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccHHHH-----H
Confidence 85 567888777755333333334443 56654432111110000011 112456888888877433332 2
Q ss_pred HHHHHHHHHHHHhcccc
Q 010990 418 DDMLLAASEALAKQVTE 434 (496)
Q Consensus 418 d~m~~aAA~aLA~~v~~ 434 (496)
..|...+++.+-+....
T Consensus 287 ~~~~~~~~~ni~~~~~g 303 (525)
T TIGR01327 287 ENVATQVAEQVLDALKG 303 (525)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 33444455555554443
No 246
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=73.11 E-value=32 Score=38.33 Aligned_cols=184 Identities=21% Similarity=0.242 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHhhCCCeeeEeeeCCCccHH---HHHHHHcC---CC--c-----e----eecCCCchhHHHHHHHHHH
Q 010990 164 AELLDEFMSAVKQNYGEKVLIQFEDFANHNAF---ELLAKYGT---TH--L-----V----FNDDIQGTASVVLAGVVAA 226 (496)
Q Consensus 164 ~~~vdefv~av~~~fGp~~li~~EDf~~~~af---~iL~~yr~---~~--~-----~----FnDDiQGTa~V~LAgll~A 226 (496)
.-+.-.|+..+.+--||..=+==+|++ ...+ -+++.|+. +. | . -|+-.--|+-=+..++=+=
T Consensus 161 ~r~~~~f~~el~~~iGp~~DvPapdig-~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~~ 239 (514)
T KOG2250|consen 161 ERITRRFTDELIDIIGPDTDVPAPDIG-TGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVEAI 239 (514)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCccccc-cCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHHHH
Confidence 344556666666677886666667776 3333 35788863 11 1 1 1444444554444443333
Q ss_pred HHHhC--CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc-hhhccccC
Q 010990 227 LKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHE 303 (496)
Q Consensus 227 lr~~g--~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k-~~~a~~~~ 303 (496)
+.-.+ +++++.|+++-|-|--|.-.|..|.+. |- +-|-+-|++|.|.... .++..+ ..++....
T Consensus 240 ~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~-----G~------kvvavsD~~G~l~np~--Gid~~eL~~~~~~k~ 306 (514)
T KOG2250|consen 240 LNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEK-----GA------KVVAVSDSKGVLINPD--GIDIEELLDLADEKK 306 (514)
T ss_pred HHhccCCCCcCceEEEEeCCCchHHHHHHHHHhc-----CC------EEEEEEcCceeEECCC--CCCHHHHHHHHHhhc
Confidence 33334 779999999999999998888888764 43 5688899999998763 454433 33443222
Q ss_pred CCCCHHHH--------------hcccCCcEEEEccCCCCCCCHHHHHHH-HccCCCceEEecCC-CCCCCCCCHHHHhcc
Q 010990 304 PVNNLLDA--------------VKVIKPTILIGSSGVGRTFTKEVIEAM-ASFNEKPLILALSN-PTSQSECTAEEAYTW 367 (496)
Q Consensus 304 ~~~~L~e~--------------v~~vkptvLIG~S~~~g~Ft~evv~~M-~~~~~rPIIFaLSN-Pt~~~E~~peda~~~ 367 (496)
.++++.++ .---+.|+|+=+.++ +..|.+=.... +++| |+|.==|| ||+ || ++++++-
T Consensus 307 ~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT-pe--A~~vlek 380 (514)
T KOG2250|consen 307 TIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT-PE--ADEVLEK 380 (514)
T ss_pred cccccccccccCccccccCcchhhHhhCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC-hh--HHHHHHh
Confidence 22211111 111259999999998 68877666655 5555 89999999 653 33 3456553
No 247
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=73.00 E-value=6.7 Score=41.44 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=57.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc--ccCCCcCCCchhchhhccc---cC---CCCCH
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHE---HE---PVNNL 308 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL--i~~~r~~~l~~~k~~~a~~---~~---~~~~L 308 (496)
.+|.|+|||+=|+++|..+.+. |- .=++|..|.+=. |-.+|. -.+|... ++ ...+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999863 52 236787765310 111121 1123221 11 23689
Q ss_pred HHHhcccCCc-EEEEccCCCCCCCHHHHHHHHc-cCCCceEEecC
Q 010990 309 LDAVKVIKPT-ILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALS 351 (496)
Q Consensus 309 ~e~v~~vkpt-vLIG~S~~~g~Ft~evv~~M~~-~~~rPIIFaLS 351 (496)
.+++++ .| ++++++++ +-+++++.|.. ..++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 999886 44 55666664 57888888852 23555555554
No 248
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=72.90 E-value=5.6 Score=41.38 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=44.2
Q ss_pred eeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHH
Q 010990 207 VFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIAL 257 (496)
Q Consensus 207 ~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GA-G~Ag~GiA~ll~~ 257 (496)
=|-.---+||-++.-.++-+..-+|..|++.++-|+|| |..|.+||+.|..
T Consensus 138 ~~ttgns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 138 RFTTGNSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ecccCCccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 34444457899999999999999999999999999998 8999999999854
No 249
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.85 E-value=4.4 Score=41.96 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 87 799999987
No 250
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=72.76 E-value=7.8 Score=43.16 Aligned_cols=38 Identities=29% Similarity=0.470 Sum_probs=28.2
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 231 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 231 g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+..+++.+++|+|||.+|-+|+..|.+ .|. +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G~-------~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KGA-------RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 346888999999999777777766654 352 68888873
No 251
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=72.16 E-value=3.3 Score=42.26 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=34.2
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccC
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 285 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~ 285 (496)
+|++++|+++|.|.-|--+++.|.. .|+ .+|.++|-+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5899999999999988777777765 487 78999999866443
No 252
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=71.90 E-value=11 Score=39.07 Aligned_cols=88 Identities=18% Similarity=0.293 Sum_probs=69.0
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCC
Q 010990 212 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS 290 (496)
Q Consensus 212 iQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~-Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~ 290 (496)
..+.--+|-+|++.-++-.+.+|.+.++|++|.+. -|--+|.+|... +. .+.+|+|+ |
T Consensus 132 ~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~-----na-------TVtvcHs~---T------ 190 (283)
T COG0190 132 EPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNA-----NA-------TVTVCHSR---T------ 190 (283)
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhC-----CC-------EEEEEcCC---C------
Confidence 33455688999999999999999999999999876 477788777652 43 46777664 1
Q ss_pred CchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHH
Q 010990 291 LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 337 (496)
Q Consensus 291 l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~ 337 (496)
.+|.+.++. +|++|-.-+.++.|+.|+|+.
T Consensus 191 ---------------~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk~ 220 (283)
T COG0190 191 ---------------KDLASITKN--ADIVVVAVGKPHFIKADMVKP 220 (283)
T ss_pred ---------------CCHHHHhhh--CCEEEEecCCccccccccccC
Confidence 346677776 999999999999999888873
No 253
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=71.62 E-value=24 Score=35.97 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.||.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 5899999999999999888653 54 1368888874
No 254
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=71.32 E-value=7.7 Score=40.96 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.4
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 010990 238 RFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~ 257 (496)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999965
No 255
>PRK06823 ornithine cyclodeaminase; Validated
Probab=70.92 E-value=28 Score=36.27 Aligned_cols=106 Identities=10% Similarity=0.107 Sum_probs=67.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc---CCCCCHHHH
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 311 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~e~ 311 (496)
.-.++.++|+|.-+-.-++.++.. ..+ ++|+++|+. ..+ ...+.....+.. ....+.+++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TDC------RQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 456999999999988887776653 123 688888774 222 222222221111 113689999
Q ss_pred hcccCCcEEEEccC-CCCCCCHHHHHHHHccCCCceEEecCCCC-CCCCCCHHHHh
Q 010990 312 VKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEAY 365 (496)
Q Consensus 312 v~~vkptvLIG~S~-~~g~Ft~evv~~M~~~~~rPIIFaLSNPt-~~~E~~peda~ 365 (496)
++. +|+++-+.+ ....|..++++ +.-.|-+...-+ .+.|+.++-..
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHHh
Confidence 987 999987533 23478888776 455677776433 37899987653
No 256
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=70.79 E-value=5.1 Score=39.25 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999998754 254 58999975
No 257
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=70.75 E-value=12 Score=38.74 Aligned_cols=105 Identities=15% Similarity=0.193 Sum_probs=65.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc----cCCCCCHHH
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 310 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~e 310 (496)
.-.++.|+|+|.-|..-++.++.. ..+ ++|.+.|+. ..+ ...+...+.+. -....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FDH---ARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999988777776653 233 778888774 222 23333333321 122478999
Q ss_pred HhcccCCcEEEEccCC-CCCCCHHHHHHHHccCCCceEEecC-CCCCCCCCCHHHH
Q 010990 311 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEEA 364 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~-~g~Ft~evv~~M~~~~~rPIIFaLS-NPt~~~E~~peda 364 (496)
++++ .||++-+... ...|..++++. .--|-++- +--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9987 9999875332 24677777763 23455543 2224688888744
No 258
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=70.45 E-value=43 Score=41.39 Aligned_cols=120 Identities=21% Similarity=0.276 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhCCCeeeEeeeCCCc-------cHHHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEE
Q 010990 168 DEFMSAVKQNYGEKVLIQFEDFANH-------NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFL 240 (496)
Q Consensus 168 defv~av~~~fGp~~li~~EDf~~~-------~af~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv 240 (496)
-+.+++.-+.+++.++|| |++.. +-+++..+|.-.+++.+=|-+|.+-- .+.|
T Consensus 441 ~~ViEaaLk~~~G~~IIN--SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t----------------~e~r-- 500 (1229)
T PRK09490 441 WEVIEAGLKCIQGKGIVN--SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADT----------------RERK-- 500 (1229)
T ss_pred HHHHHHHHhhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------HHHH--
Confidence 467777777787888887 55542 47788999999999999888886643 1222
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc-----
Q 010990 241 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI----- 315 (496)
Q Consensus 241 ~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v----- 315 (496)
+.||+.+.+.+..+.|++. ++|+ +|.- +..-- .+.. ....++.+ ..|+|+.+
T Consensus 501 --------~~ia~r~~~~~~~~~Gi~~----~dIi-~Dpl--v~~v~-t~~e-e~~~~~~~------~leair~ik~~~P 557 (1229)
T PRK09490 501 --------IEICKRAYDILTEEVGFPP----EDII-FDPN--IFAVA-TGIE-EHNNYAVD------FIEATRWIKQNLP 557 (1229)
T ss_pred --------HHHHHHHHHHHHHHcCCCH----HHEE-EcCC--cceee-cChH-HHHHHHHH------HHHHHHHHHHHCC
Confidence 3788888887765579974 4565 7873 32211 1122 22344432 34566533
Q ss_pred CCcEEEEccCCCCCC
Q 010990 316 KPTILIGSSGVGRTF 330 (496)
Q Consensus 316 kptvLIG~S~~~g~F 330 (496)
...+..|+|...=.|
T Consensus 558 ~~~~~~GlSNiSFgl 572 (1229)
T PRK09490 558 HAKISGGVSNVSFSF 572 (1229)
T ss_pred CCcEEEeeccccccC
Confidence 345899999986445
No 259
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=69.83 E-value=99 Score=33.41 Aligned_cols=195 Identities=15% Similarity=0.163 Sum_probs=113.8
Q ss_pred cCCCceeecCC---CchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHH
Q 010990 202 GTTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 260 (496)
Q Consensus 202 r~~~~~FnDDi---QGTa~V~LAgll~Alr~------------------~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~ 260 (496)
+..++++|--- +.+|=-+++.+|+.+|- .+..|.+.++.|+|.|..|-.+|+.+...
T Consensus 96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f-- 173 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL-- 173 (409)
T ss_pred hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC--
Confidence 35788888532 23455578888887763 13568999999999999999999988643
Q ss_pred HhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEEccC----CCCCCCHHHHH
Q 010990 261 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 336 (496)
Q Consensus 261 ~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evv~ 336 (496)
|+ +++.+|+.. + .... .+ ....+|.|+++. .|+++=.-- ..+.|+++.++
T Consensus 174 ---Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l~ 227 (409)
T PRK11790 174 ---GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEELA 227 (409)
T ss_pred ---CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHHh
Confidence 65 588888631 1 0000 01 113579999987 888773211 12589999999
Q ss_pred HHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCC-C--CCcccCCeee-CccCcccccccchhhHHHHHhC
Q 010990 337 AMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP-F--DPFEYNGKVF-VPGQANNAYIFPGFGLGLVISG 412 (496)
Q Consensus 337 ~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsP-f--~pv~~~G~~~-~p~Q~NN~~iFPGiglG~l~~~ 412 (496)
.|. +.-++.-.|+-.---|-.--+|++ .|+ |.+.|.- | +|..-+.... .--+..|+++-|=+|-....+
T Consensus 228 ~mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea- 300 (409)
T PRK11790 228 LMK---PGAILINASRGTVVDIDALADALK--SGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEA- 300 (409)
T ss_pred cCC---CCeEEEECCCCcccCHHHHHHHHH--cCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHH-
Confidence 996 566777776643222222233433 466 4333321 2 1221110000 112456899999888543332
Q ss_pred CcccCHHHHHHHHHHHHhccccc
Q 010990 413 AIRVHDDMLLAASEALAKQVTEE 435 (496)
Q Consensus 413 a~~itd~m~~aAA~aLA~~v~~e 435 (496)
...|...+++.+......+
T Consensus 301 ----~~~~~~~~~~nl~~~~~~~ 319 (409)
T PRK11790 301 ----QENIGLEVAGKLVKYSDNG 319 (409)
T ss_pred ----HHHHHHHHHHHHHHHHcCC
Confidence 2345555666666655433
No 260
>PRK00536 speE spermidine synthase; Provisional
Probab=69.67 E-value=4.4 Score=41.39 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=61.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCC-CCHHHHhccc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 315 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~-~~L~e~v~~v 315 (496)
.||+|+|.|-.| +++-++.. + +++.|||-++-|++--.+.++..+..|..++-.. ..+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-------~-----~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-------D-----THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-------C-----CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 799999999984 56665542 1 3899999999777543344665555443222111 1222211 13
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF 380 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf 380 (496)
+-||+|-=|. |+++-.+.+.+ +++ -+|-.+.-|||||
T Consensus 139 ~fDVIIvDs~----~~~~fy~~~~~-----------------------~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 139 KYDLIICLQE----PDIHKIDGLKR-----------------------MLK-EDGVFISVAKHPL 175 (262)
T ss_pred cCCEEEEcCC----CChHHHHHHHH-----------------------hcC-CCcEEEECCCCcc
Confidence 6899996654 66666555432 222 3677777788887
No 261
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=69.53 E-value=6.3 Score=41.22 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=57.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCc--------CCCchhchhhccc----c---
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE----H--- 302 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~--------~~l~~~k~~~a~~----~--- 302 (496)
||+++|+|.-|+-+|+.|+.+ |+ ++|.++|.+ .|..+.- +++-..|..-|.+ .
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D-~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~ 68 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD-TIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPN 68 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC-CcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCC
Confidence 689999999999999999864 77 789999987 3332210 0111112111110 0
Q ss_pred -------CCCCC---HHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010990 303 -------EPVNN---LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 352 (496)
Q Consensus 303 -------~~~~~---L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN 352 (496)
....+ ..+-++. .|++|.+.... =.+..+..++..+..|.|.+-+.
T Consensus 69 v~V~~~~~~i~~~~~~~~f~~~--~DvVv~a~Dn~--~ar~~in~~c~~~~ip~I~~gt~ 124 (312)
T cd01489 69 VKIVAYHANIKDPDFNVEFFKQ--FDLVFNALDNL--AARRHVNKMCLAADVPLIESGTT 124 (312)
T ss_pred CeEEEEeccCCCccchHHHHhc--CCEEEECCCCH--HHHHHHHHHHHHCCCCEEEEecC
Confidence 01111 1233443 77777665422 14566777777778888886543
No 262
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.35 E-value=12 Score=38.35 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999999753 4 357777774
No 263
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.41 E-value=6 Score=36.61 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=56.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCCCCCHHHHhccc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 315 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~v 315 (496)
.||-|+|.|..|.++|+.|... |. +++..|+. . +..+++.+. .....|+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~-------~~~~~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----P-------EKAEALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----H-------HHHHHHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----h-------hhhhhhHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999999653 64 58877753 1 111223322 1224789999988
Q ss_pred CCcEEEEccCCCCCCCHHHHHH--HH-ccCCCceEEecCCCCCCCCCCHHHHhc
Q 010990 316 KPTILIGSSGVGRTFTKEVIEA--MA-SFNEKPLILALSNPTSQSECTAEEAYT 366 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~--M~-~~~~rPIIFaLSNPt~~~E~~peda~~ 366 (496)
.|++|=+=..+ .=.++++.. +. ...+..||.=+|+-+ ||.+-+-+-.
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~ 107 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAER 107 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHH
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhh
Confidence 68777432211 113444444 32 234666777777765 5555554443
No 264
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=68.28 E-value=12 Score=41.08 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=60.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc--cCCCCCHHHHhccc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 315 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~--~~~~~~L~e~v~~v 315 (496)
.|-|+|.|..|..+|..|... |. ++++.|+. .. .....++.+... .....++.|+++.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE---KTDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH---HHHHHHhhccCCCCceecCCHHHHHhhc
Confidence 378999999999999999763 64 57777763 11 122222211100 11235788888654
Q ss_pred -CCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCC
Q 010990 316 -KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 352 (496)
Q Consensus 316 -kptvLIG~S~~~g~Ft~evv~~M~~~-~~rPIIFaLSN 352 (496)
+|+++| ++-+++...++|+..+..+ .+.-||.=+||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 3444456678888877654 46779999998
No 265
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=67.87 E-value=14 Score=40.76 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=61.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc-c--cCCCCCHHHHhcc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E--HEPVNNLLDAVKV 314 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~-~--~~~~~~L~e~v~~ 314 (496)
+|-|+|.|..|.++|..|.. .|. +++++|++ .++ .++..+.-.. . .....++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~-----~G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIAS-----RGF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHH-----CCC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 79999999999999999975 364 58888773 211 1112111000 0 1124689999976
Q ss_pred c-CCcEEEEccCCCCCCCHHHHHHHHc-cCCCceEEecCCCC
Q 010990 315 I-KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 354 (496)
Q Consensus 315 v-kptvLIG~S~~~g~Ft~evv~~M~~-~~~rPIIFaLSNPt 354 (496)
+ +|+++| +.-.++...++|++.+.. ..+..||.=+||=.
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 5 588555 333344567788877654 34578999999853
No 266
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=67.78 E-value=67 Score=39.59 Aligned_cols=119 Identities=19% Similarity=0.293 Sum_probs=71.1
Q ss_pred HHHHHHHHhhCCCeeeEeeeCCCc-------cHHHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEE
Q 010990 169 EFMSAVKQNYGEKVLIQFEDFANH-------NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF 241 (496)
Q Consensus 169 efv~av~~~fGp~~li~~EDf~~~-------~af~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~ 241 (496)
+.+++.-+.+.+..+|| |++.. +-+++..+|.-.+|+++=|-+|.+.-.- . |
T Consensus 426 ~v~eaaLk~~~G~~IIN--sIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~e-~-----r------------- 484 (1178)
T TIGR02082 426 AVLEAGLKCIQGKCIVN--SISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTAD-R-----K------------- 484 (1178)
T ss_pred HHHHHHHHhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHH-H-----H-------------
Confidence 55566666665667776 55542 3677788888888888877777553210 0 1
Q ss_pred eCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc-----C
Q 010990 242 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-----K 316 (496)
Q Consensus 242 ~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v-----k 316 (496)
+.+++.+++.+.++.|++. ++|+ +|.- +.+-+- +.+ .+..++. . -.|+|+.+ .
T Consensus 485 -------~~i~~~~~~~~~~~~Gi~~----edIi-~DP~-i~~v~~--g~~-e~n~~~~-----~-~le~i~~ik~~~pg 542 (1178)
T TIGR02082 485 -------IEICKRAYNILTEKVGFPP----EDII-FDPN-ILTIAT--GIE-EHRRYAI-----N-FIEAIRWIKEELPD 542 (1178)
T ss_pred -------HHHHHHHHHHHHHHcCCCH----HHEE-EeCC-cccccc--Cch-HHHHHHH-----H-HHHHHHHHHHhCCC
Confidence 2388888887765579964 5666 7772 322211 111 1112221 2 23566666 4
Q ss_pred CcEEEEccCCCCCC
Q 010990 317 PTILIGSSGVGRTF 330 (496)
Q Consensus 317 ptvLIG~S~~~g~F 330 (496)
.-+++|+|...=.|
T Consensus 543 ~~~~~GlSN~SFgl 556 (1178)
T TIGR02082 543 AKISGGVSNVSFSF 556 (1178)
T ss_pred CceEEEecccccCC
Confidence 67999999987445
No 267
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=67.59 E-value=6.1 Score=41.81 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=24.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 79999999999999988865 365 47777765
No 268
>PRK13937 phosphoheptose isomerase; Provisional
Probab=67.52 E-value=23 Score=33.78 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.6
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMA 339 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~ 339 (496)
+-|++|++|..|. |+++++.+.
T Consensus 106 ~~Dl~i~iS~sG~--t~~~~~~~~ 127 (188)
T PRK13937 106 PGDVLIGISTSGN--SPNVLAALE 127 (188)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHH
Confidence 4699999999875 999998874
No 269
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=67.40 E-value=6.8 Score=41.12 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=27.1
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 010990 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 283 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi 283 (496)
|+|+|||.||..+|..|.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999999443 123 579999987443
No 270
>PRK08618 ornithine cyclodeaminase; Validated
Probab=67.33 E-value=13 Score=38.57 Aligned_cols=102 Identities=15% Similarity=0.219 Sum_probs=58.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-c---CCCCCHHH
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLD 310 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~---~~~~~L~e 310 (496)
...++.|+|+|..|-.++..+... .|+ +++.++|+. ..| .......+... . ....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 456899999999988777665442 244 689988874 222 22222222211 1 12367888
Q ss_pred HhcccCCcEEEEccCCC-CCCCHHHHHHHHccCCCceEEecCCCC-CCCCCCHH
Q 010990 311 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAE 362 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~rPIIFaLSNPt-~~~E~~pe 362 (496)
++++ .|++|-++..+ ..|+ +.++ +.--|.++--.+ .+.|+.++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCHH
Confidence 8876 89988655433 1233 3332 344466663322 36788874
No 271
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=67.32 E-value=35 Score=29.99 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=36.2
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHc--cCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecC-CCCCCcc
Q 010990 317 PTILIGSSGVGRTFTKEVIEAMAS--FNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG-SPFDPFE 384 (496)
Q Consensus 317 ptvLIG~S~~~g~Ft~evv~~M~~--~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsG-sPf~pv~ 384 (496)
-|++|++|..|. |+|+++.+.. ...-|+|-=-+||.+ . -. +.+|-...+.+| +++.+++
T Consensus 48 ~dl~I~iS~SG~--t~~~~~~~~~a~~~g~~vi~iT~~~~s--~--la---~~ad~~l~~~~~~~~~~~~~ 109 (120)
T cd05710 48 KSVVILASHSGN--TKETVAAAKFAKEKGATVIGLTDDEDS--P--LA---KLADYVIVYGFEIDAVEEKY 109 (120)
T ss_pred CcEEEEEeCCCC--ChHHHHHHHHHHHcCCeEEEEECCCCC--c--HH---HhCCEEEEccCCcCccchHH
Confidence 689999999885 9999998853 334465554444442 1 11 133444556677 6666554
No 272
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=67.26 E-value=17 Score=36.10 Aligned_cols=47 Identities=34% Similarity=0.437 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 010990 221 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 279 (496)
Q Consensus 221 Agll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~ 279 (496)
+..+.|++..+. ..+.+++|+|+|+.|...+.+. .+ .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 344556665544 3678999999987775554443 22 364 56887764
No 273
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=66.74 E-value=25 Score=36.92 Aligned_cols=103 Identities=19% Similarity=0.326 Sum_probs=63.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-CcccCCCcCCCchhchhhcc-cc--CCCCCHHHHh
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAH-EH--EPVNNLLDAV 312 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~-GLi~~~r~~~l~~~k~~~a~-~~--~~~~~L~e~v 312 (496)
.||.++|||.-|-..|-+|+. .++. +.+.++|.. +...-.. -+|.+- ..+.. +. ...++ -+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a-~DL~~~-~~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVA-LDLSHA-AAPLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchh-cchhhc-chhccCceEEecCCC-hhhh
Confidence 389999999999999888833 3553 479999987 1111111 112221 11111 11 01123 3556
Q ss_pred cccCCcEEEEccC---CCC-----------CCCHHHHHHHHccCCCceEEecCCCC
Q 010990 313 KVIKPTILIGSSG---VGR-----------TFTKEVIEAMASFNEKPLILALSNPT 354 (496)
Q Consensus 313 ~~vkptvLIG~S~---~~g-----------~Ft~evv~~M~~~~~rPIIFaLSNPt 354 (496)
++ .|+.+=+.+ .+| ..-+++.+.+++.++..||+-.|||.
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv 121 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV 121 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH
Confidence 66 887774443 333 13357888999999999999999997
No 274
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=66.29 E-value=6.9 Score=40.92 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=24.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.|+|+|||.||...|..|.. .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 58999999999999988865 364 46777776
No 275
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=66.25 E-value=4 Score=42.80 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 010990 237 HRFLFLGAGEAGTGIAELIALE 258 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~ 258 (496)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999764
No 276
>PRK06847 hypothetical protein; Provisional
Probab=66.23 E-value=7.8 Score=39.75 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=25.6
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..+|+|+|||.||+..|.+|.. .|+ ++.++++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~-----~g~-------~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR-----AGI-------AVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEecC
Confidence 4589999999999999998865 365 46666654
No 277
>PRK06184 hypothetical protein; Provisional
Probab=66.09 E-value=7.4 Score=42.27 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=28.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
++..|+|+|||.+|+..|-+|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 45789999999999999988865 476 477888753
No 278
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=65.54 E-value=7.8 Score=40.55 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
.+|+|+|||-+|+.+|..|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999999753 5 4689999864
No 279
>PRK07236 hypothetical protein; Provisional
Probab=65.53 E-value=8.8 Score=39.96 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
.+..+|+|+|||.||+..|..|..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456799999999999999999876
No 280
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.02 E-value=22 Score=33.88 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=24.4
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 234 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 234 l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+++.+++|.|+ |..|..+|+.+++ .|. +++++|++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g~-------~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EGA-------KVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 45678999996 6667777777654 353 58877764
No 281
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=64.90 E-value=9.6 Score=35.62 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=29.3
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+|++.||||+|+|..|.-.+++|+++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 57899999999999999999988763 4 367777643
No 282
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=64.83 E-value=42 Score=31.32 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMA 339 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~ 339 (496)
+-|++|+.|..|. |+++++.+.
T Consensus 101 ~~Dv~I~iS~SG~--t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSGN--SPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHH
Confidence 4799999999775 999999985
No 283
>PRK08163 salicylate hydroxylase; Provisional
Probab=64.59 E-value=8.2 Score=39.97 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.2
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 010990 236 EHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988864
No 284
>PLN02688 pyrroline-5-carboxylate reductase
Probab=64.40 E-value=13 Score=36.83 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=54.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-cCCCcccCCCcCCCchhchhhcccc-CCCCCHHHHhccc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 315 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~v-D~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~e~v~~v 315 (496)
||.|+|.|..|..+|+.|+.. |.- -..+|+++ |+. ..+ . +.+.+.. ....+..|++++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~----~~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---R----DVFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---H----HHHHHcCCEEeCChHHHHhc-
Confidence 689999999999999998753 420 02367776 542 111 1 1222111 112567777765
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 354 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~-~~rPIIFaLSNPt 354 (496)
+|++| ++-.+ ...+++++..... .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 67665 33333 3477887776543 3445666665554
No 285
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=63.72 E-value=11 Score=32.66 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=49.2
Q ss_pred CcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEE
Q 010990 243 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 322 (496)
Q Consensus 243 GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG 322 (496)
|.|..|-+++++|...-.. -++ +=..++||++++... +...........++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~~------~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-IDL------EVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CEE------EEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CCE------EEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999763111 011 346677777443332 1112122233478999999788999999
Q ss_pred ccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 323 SSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 323 ~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
+++ .....+-+.+.+. +...+|.
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 944 4345555555554 2345553
No 286
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=63.66 E-value=35 Score=32.89 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=48.8
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhc
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 313 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~ 313 (496)
.++.||.|+|.|..+ .+|..+...|..+.++.. -..+++..+....+.. - .+-..+...|++. + .+.
T Consensus 42 ~~~~rI~i~G~G~S~-~~A~~~a~~l~~~~~~~r--~g~~~~~~~d~~~~~~-~-~~d~~~~~~~~~~------~-~~~- 108 (192)
T PRK00414 42 KAGGKVLSCGNGGSH-CDAMHFAEELTGRYRENR--PGYPAIAISDVSHLSC-V-SNDFGYDYVFSRY------V-EAV- 108 (192)
T ss_pred HCCCEEEEEeCcHHH-HHHHHHHHHhcccccCCC--CCceEEecCcHHHHhh-h-hccCCHHHHHHHH------H-HHh-
Confidence 456799999999987 666666655532111110 0122322211111110 0 0001111122211 1 111
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHH--ccCCCceEE
Q 010990 314 VIKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLIL 348 (496)
Q Consensus 314 ~vkptvLIG~S~~~g~Ft~evv~~M~--~~~~rPIIF 348 (496)
.-+-|++|++|..|. |+++++.+. +...-|||-
T Consensus 109 ~~~~Dv~I~iS~SG~--t~~~i~~~~~ak~~g~~iI~ 143 (192)
T PRK00414 109 GREGDVLLGISTSGN--SGNIIKAIEAARAKGMKVIT 143 (192)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEE
Confidence 124699999999874 999998874 333344444
No 287
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=63.64 E-value=10 Score=37.05 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.9
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+|++.|++|+|+|..|..-++.|+.+ | .+|.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47788999999999999999998864 5 368888874
No 288
>PRK06270 homoserine dehydrogenase; Provisional
Probab=63.13 E-value=50 Score=34.63 Aligned_cols=104 Identities=17% Similarity=0.255 Sum_probs=63.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh-chhhccccC---------
Q 010990 237 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-KKPWAHEHE--------- 303 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~---~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~-k~~~a~~~~--------- 303 (496)
.||.++|.|..|-+++++|.+. +.++.|+. -+=+-++|++|.+...+. ++.. -..++++..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 5899999999999999998653 22222331 122446799998887652 3221 122332211
Q ss_pred CCCCHHHHhcccCCcEEEEccCCC---CCCCHHH-HHHHHccCCCceEE
Q 010990 304 PVNNLLDAVKVIKPTILIGSSGVG---RTFTKEV-IEAMASFNEKPLIL 348 (496)
Q Consensus 304 ~~~~L~e~v~~vkptvLIG~S~~~---g~Ft~ev-v~~M~~~~~rPIIF 348 (496)
...++.|+++...+||+|=++... +-...++ .+++. +..+||.
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVt 123 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVT 123 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEc
Confidence 123889999888899999776531 1222455 44444 3577777
No 289
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=63.05 E-value=11 Score=36.75 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.8
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 279 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~ 279 (496)
+|++.+++|+|+|..|.-.++.|+.+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 47899999999999999888888763 4 36888865
No 290
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=62.93 E-value=7.8 Score=40.38 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=26.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+.+|+|+|||.||+..|-.|.. .|. ++.++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD-----SGL-------RIALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEecC
Confidence 4689999999999999999865 365 46677765
No 291
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=62.89 E-value=7.7 Score=35.61 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.3
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 240 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 240 v~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998763 1123468999999755
No 292
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=62.84 E-value=51 Score=30.32 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--ccCCCceEEecCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNP 353 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~--~~~~rPIIFaLSNP 353 (496)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999977 4899888774 33344554433333
No 293
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=62.74 E-value=35 Score=36.90 Aligned_cols=132 Identities=13% Similarity=0.064 Sum_probs=73.1
Q ss_pred cceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcC--cEEEE--cCCCcccCCCcCCCchhchhhccccCCCCCHHH
Q 010990 236 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK--KICLV--DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 310 (496)
Q Consensus 236 d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~--~i~~v--D~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 310 (496)
-.||.|+|| |..|..+|-.|+. .|+-.| -+ .+.|+ |.+-=..++..-+|.+-.-++.....-..+-.+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~-----~~l~~~--~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLAS-----GEVFGQ--DQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHh-----ccccCC--CCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHH
Confidence 369999999 9999999998765 255211 01 34445 432111111000122221122211110123346
Q ss_pred HhcccCCcEEEEccCCCCC--CC------------HHHHHHHHccC-CCceEEecCCCCCCCCCCHHHHhcccC--CcEE
Q 010990 311 AVKVIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSK--GRAI 373 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~~g~--Ft------------~evv~~M~~~~-~rPIIFaLSNPt~~~E~~peda~~~t~--G~ai 373 (496)
.+++ .|++|=+.+.+.. -| +++.+.+.++. +.-||+--|||- .+..--+++++. -+-+
T Consensus 117 ~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv---Dv~t~v~~k~sg~~~~rv 191 (387)
T TIGR01757 117 VFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC---NTNALIAMKNAPNIPRKN 191 (387)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH---HHHHHHHHHHcCCCcccE
Confidence 6777 8998866665421 23 45677777755 899999999994 566666666652 1346
Q ss_pred EecCCC
Q 010990 374 FASGSP 379 (496)
Q Consensus 374 ~AsGsP 379 (496)
|.||+-
T Consensus 192 iG~gT~ 197 (387)
T TIGR01757 192 FHALTR 197 (387)
T ss_pred EEecch
Confidence 666643
No 294
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=62.74 E-value=9.8 Score=41.55 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.4
Q ss_pred CcccceEEEeCcChHHHHHHHHHHH
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 4556799999999999999988865
No 295
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=62.62 E-value=23 Score=37.22 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=26.7
Q ss_pred CCHHHHhcccCCcE-EEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 306 NNLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 306 ~~L~e~v~~vkptv-LIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
+.|.+.... .|+ ++|-|-..+ |...++++|+ +..|||+
T Consensus 311 ~el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 311 GELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 345666666 887 677665333 5666899998 6888886
No 296
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=62.48 E-value=28 Score=36.45 Aligned_cols=135 Identities=18% Similarity=0.289 Sum_probs=77.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCC--CCCHH
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLL 309 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~--~~~L~ 309 (496)
++.+..||.++|+|.-|+++|-.|+.- |++ +++.++|-+==-.++..=+|+ |-.+|-+.+.- .++..
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MDLq-H~s~f~~~~~V~~~~Dy~ 84 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMDLQ-HGSAFLSTPNVVASKDYS 84 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhhhc-cccccccCCceEecCccc
Confidence 456678999999999999999988753 774 678899964111111110132 33455554211 12221
Q ss_pred HHhcccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccC--CcEE
Q 010990 310 DAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAI 373 (496)
Q Consensus 310 e~v~~vkptvLIG~S~~~g~--------------Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~--G~ai 373 (496)
. =+ .-++.|=+.+..+. .=+.+|....+..++-|++-.|||. ++.-=-+++.|. -.-+
T Consensus 85 ~-sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV---DilTYv~wKLSgfP~nRV 158 (332)
T KOG1495|consen 85 V-SA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV---DILTYVTWKLSGFPKNRV 158 (332)
T ss_pred c-cC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch---HHHHHHHHHHcCCcccce
Confidence 1 12 25555544443332 1246777778899999999999996 333333333321 1235
Q ss_pred EecCCCCCCc
Q 010990 374 FASGSPFDPF 383 (496)
Q Consensus 374 ~AsGsPf~pv 383 (496)
|.||.-.+..
T Consensus 159 iGsGcnLDsa 168 (332)
T KOG1495|consen 159 IGSGCNLDSA 168 (332)
T ss_pred eccCcCccHH
Confidence 6666655443
No 297
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=62.33 E-value=8 Score=39.44 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=28.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.-..+-|+|||-.|-|||...+.+ |+ ++|++|++
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cccceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 335688999999999999988764 76 69999985
No 298
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.27 E-value=4.6 Score=47.27 Aligned_cols=129 Identities=22% Similarity=0.350 Sum_probs=78.8
Q ss_pred HHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 010990 200 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 279 (496)
Q Consensus 200 ~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~ 279 (496)
||-..+.||..+-| ++|.++++-++|||+.||-.-+-+.+. |+.--+. +.|.+.|-
T Consensus 412 RYD~qiavfG~~fq------------------eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~~-g~ItVTDm 467 (1013)
T KOG2012|consen 412 RYDGQIAVFGAKFQ------------------EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGNS-GKITVTDM 467 (1013)
T ss_pred ccccchhhhchHHH------------------HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCCC-CceEEecc
Confidence 66667777766544 679999999999999998766655432 5532221 35777766
Q ss_pred CCcccCCCcCCCchhchhhc-ccc--CC--CCCHHHHhcccCCcEEEEc-------cCCCCCCCHHHHHHHHccCCCceE
Q 010990 280 KGLIVSSRKDSLQHFKKPWA-HEH--EP--VNNLLDAVKVIKPTILIGS-------SGVGRTFTKEVIEAMASFNEKPLI 347 (496)
Q Consensus 280 ~GLi~~~r~~~l~~~k~~~a-~~~--~~--~~~L~e~v~~vkptvLIG~-------S~~~g~Ft~evv~~M~~~~~rPII 347 (496)
+ .|.++ +|+ +.|. |+. .. ...-++|+...+|++.|=. -+ -++|+.+--+..- =++
T Consensus 468 D-~IEkS---NLn---RQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~Va 534 (1013)
T KOG2012|consen 468 D-HIEKS---NLN---RQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GVA 534 (1013)
T ss_pred c-hhhhc---ccc---ceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HHH
Confidence 5 44443 243 2222 221 11 1356788999999998732 22 2467776655542 233
Q ss_pred EecCCCCCCCCCCHHHHhcccCCcEEE
Q 010990 348 LALSNPTSQSECTAEEAYTWSKGRAIF 374 (496)
Q Consensus 348 FaLSNPt~~~E~~peda~~~t~G~ai~ 374 (496)
=||=|= ||-.|-|+||+|
T Consensus 535 nALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 535 NALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred Hhhcch---------hhhhhhhhhhhh
Confidence 345554 577788889887
No 299
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=62.22 E-value=12 Score=40.93 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||+++|||..|+-++..|+.+ |+...+ .++|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 662211 2689999987
No 300
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=62.22 E-value=7.7 Score=41.56 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=26.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||||+|+|.||+..|+.|.+. +- .-+|.++|++
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999999642 21 1368888876
No 301
>PRK09126 hypothetical protein; Provisional
Probab=62.20 E-value=9.3 Score=39.50 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=26.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+..|+|+|||.||+..|..|.. .|+ ++.++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-----SGL-------KVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEeCC
Confidence 4579999999999999998865 365 46777764
No 302
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=62.19 E-value=5.1 Score=41.23 Aligned_cols=37 Identities=11% Similarity=0.277 Sum_probs=27.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 283 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi 283 (496)
+|||+|+|.||+..|+.+.... . ...+|.++|++.-.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----~----~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----L----PGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----C----CCCEEEEECCCCCC
Confidence 5999999999999988875421 0 12579999987543
No 303
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=62.10 E-value=28 Score=36.35 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
|++.||.|+|+|..|-++|..|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 567899999999999999999875
No 304
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=62.05 E-value=16 Score=33.09 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC-cEEEEcCCCcccCCCcCCCch
Q 010990 215 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK-KICLVDSKGLIVSSRKDSLQH 293 (496)
Q Consensus 215 Ta~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~-~i~~vD~~GLi~~~r~~~l~~ 293 (496)
...-.+|-++..... ++.||.++|+|.++ .+|..+...+. |...-+... ...+...+.+.... ..+ +
T Consensus 19 ~~i~~aa~~i~~~~~-----~gg~i~~~G~G~S~-~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~--~~~-~ 86 (138)
T PF13580_consen 19 EAIEKAADLIAEALR-----NGGRIFVCGNGHSA-AIASHFAADLG---GLFGVNRILLPAIALNDDALTAIS--NDL-E 86 (138)
T ss_dssp HHHHHHHHHHHHHHH-----TT--EEEEESTHHH-HHHHHHHHHHH---CHSSSTSSS-SEEETTSTHHHHHH--HHT-T
T ss_pred HHHHHHHHHHHHHHH-----CCCEEEEEcCchhh-hHHHHHHHHHh---cCcCCCcccccccccccchHhhhh--ccc-c
Confidence 334445555554443 45689999999998 45555555443 221111110 11111111100000 001 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHH
Q 010990 294 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMA 339 (496)
Q Consensus 294 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~ 339 (496)
....|++ .+.+..+.-+-|+||+.|+.|+ |+-+|+++.
T Consensus 87 ~~~~~~~------~~~~~~~~~~gDvli~iS~SG~--s~~vi~a~~ 124 (138)
T PF13580_consen 87 YDEGFAR------QLLALYDIRPGDVLIVISNSGN--SPNVIEAAE 124 (138)
T ss_dssp GGGTHHH------HHHHHTT--TT-EEEEEESSS---SHHHHHHHH
T ss_pred hhhHHHH------HHHHHcCCCCCCEEEEECCCCC--CHHHHHHHH
Confidence 1122322 2445533345899999999987 889998874
No 305
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=61.99 E-value=20 Score=36.69 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=58.0
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch-h----chhhcc-ccCCCCC
Q 010990 235 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-F----KKPWAH-EHEPVNN 307 (496)
Q Consensus 235 ~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~-~----k~~~a~-~~~~~~~ 307 (496)
+..||+|.|| |-.|-.+++.|++ .| .+++.+|++.- .. ....+ . +..+.. +-....+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~---~~-~~~~~~~~~~~~~~~~~~Dl~~~~~ 66 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPP---TS-PNLFELLNLAKKIEDHFGDIRDAAK 66 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCc---cc-hhHHHHHhhcCCceEEEccCCCHHH
Confidence 4578999996 7788888877765 25 35777776521 10 00100 0 001111 1112246
Q ss_pred HHHHhcccCCcEEEEccCCCCC----------------CCHHHHHHHHccC-CCceEEecC
Q 010990 308 LLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EKPLILALS 351 (496)
Q Consensus 308 L~e~v~~vkptvLIG~S~~~g~----------------Ft~evv~~M~~~~-~rPIIFaLS 351 (496)
+.++++..+||++|=+.+.... .+..+++++.+.+ .+.+||.=|
T Consensus 67 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 67 LRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 7788888889999987764311 1345567766544 457888654
No 306
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=61.76 E-value=12 Score=37.19 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
.|+|+|||-+|+.+|..|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999999976 36 47999999833
No 307
>PRK06475 salicylate hydroxylase; Provisional
Probab=61.72 E-value=8.9 Score=40.18 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=18.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 010990 237 HRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~ 257 (496)
+||+|+|||.||+..|-.|..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999988754
No 308
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=61.50 E-value=82 Score=33.15 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=92.4
Q ss_pred HhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhh-ccccCCCCC
Q 010990 229 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNN 307 (496)
Q Consensus 229 ~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~-a~~~~~~~~ 307 (496)
..|..+...++-|+|.|..|..+|+.+. ++ |+ +|...|++.. ++..+.+ ++. -+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~y----~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGARY----VD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCcee----cc
Confidence 3456788999999999999999999997 43 55 4565666432 1111111 111 23
Q ss_pred HHHHhcccCCcEEEEccC----CCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCC---C
Q 010990 308 LLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP---F 380 (496)
Q Consensus 308 L~e~v~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsP---f 380 (496)
|.|.++. .|+++-.-- ..++|+++.++.|. +.-++.=.|+=.-.=|----+|++ .|+ |.+-|.- +
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaRG~~VDe~ALi~AL~--~g~-i~gaglDV~e~ 265 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTARGGLVDEQALIDALK--SGK-IAGAGLDVFEN 265 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCCccccCHHHHHHHHH--hCC-cceEEeeecCC
Confidence 8888887 999885421 12689999999996 556666555533222333334443 343 4444421 0
Q ss_pred CCcccCCeee-CccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhcc
Q 010990 381 DPFEYNGKVF-VPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 432 (496)
Q Consensus 381 ~pv~~~G~~~-~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v 432 (496)
+|..++-... .++. .|..+-|=++.+...++ ..|...+.+.|-+..
T Consensus 266 Ep~~~d~~l~~l~~~-~~vvltPHia~at~ea~-----~~m~~~~~~nl~~~~ 312 (324)
T COG1052 266 EPALFDHPLLRLDNF-PNVVLTPHIASATEEAR-----KAMAELALENLEAFF 312 (324)
T ss_pred CCCCCChhHhhccCC-CCEEEccccccccHHHH-----HHHHHHHHHHHHHHH
Confidence 1111111111 1222 45777777777664443 345555555555554
No 309
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=61.11 E-value=11 Score=44.98 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=32.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC----CcccC
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIVS 285 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~----GLi~~ 285 (496)
-...||+|+|+|.||+..|..|... |. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 4578999999999999999999753 64 58888876 66554
No 310
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=61.00 E-value=12 Score=39.56 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=28.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 283 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi 283 (496)
.||||+|+|.||+..|..|.+. |- .-+|.++|++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999988552 21 1379999987543
No 311
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=60.80 E-value=79 Score=33.50 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=82.1
Q ss_pred HHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceee-cCCCchhHHHHHHHHHHHHHhC-CCcccceEEEeCcChHHHHH
Q 010990 174 VKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGAGEAGTGI 251 (496)
Q Consensus 174 v~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~Fn-DDiQGTa~V~LAgll~Alr~~g-~~l~d~riv~~GAG~Ag~Gi 251 (496)
+-.+| .++++ +-..+.. +.+.+.+| ..+|++| .|-..--+=+||=++.-.+..| +++++.+|.++|-+.- ++
T Consensus 96 vls~y-~D~Iv-~R~~~~~-~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~--~v 169 (336)
T PRK03515 96 VLGRM-YDGIQ-YRGYGQE-IVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN--NM 169 (336)
T ss_pred HHHHh-CcEEE-EEeCChH-HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC--cH
Confidence 33456 44443 4444332 33333343 5799999 3444566678888888777776 4799999999998733 47
Q ss_pred HHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC----CCCCHHHHhcccCCcEEEEcc
Q 010990 252 AELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE----PVNNLLDAVKVIKPTILIGSS 324 (496)
Q Consensus 252 A~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~----~~~~L~e~v~~vkptvLIG~S 324 (496)
++-++.++.+ -|+ ++.++-.+|+.-.. + +-+.-+.+++... ...++.|++++ +||+.-.+
T Consensus 170 ~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvytd~ 233 (336)
T PRK03515 170 GNSLLEAAAL-TGL-------DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFIYTDV 233 (336)
T ss_pred HHHHHHHHHH-cCC-------EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEecC
Confidence 7877777655 365 68888777763221 1 1111123333211 13689999998 99999764
No 312
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=60.72 E-value=42 Score=33.85 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=28.3
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--ccCCCceEEecCCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 354 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~--~~~~rPIIFaLSNPt 354 (496)
+-|++||.|..|. |++++..+. +...-|+|.=-+||.
T Consensus 118 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 118 ERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 6799999999886 899998884 444557766666675
No 313
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.64 E-value=12 Score=40.33 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=23.5
Q ss_pred hCCCcccceEEEeCcChHHHHHHHHHHH
Q 010990 230 IGGTLAEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 230 ~g~~l~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
.+..++.++++|+|+|.+|+.+|+.|.+
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 4456778899999999999999988864
No 314
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=60.60 E-value=10 Score=38.09 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
.+..|+|+|||.||+..|-.+.. .|+ ++.++|++-
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 35689999999999999888754 364 688888764
No 315
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=60.58 E-value=8.7 Score=39.68 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=48.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCC----CCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP----VNN 307 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~----~~~ 307 (496)
++|.+.+|+|+|+|.-|.-+|.-|+.+ |+ ++|.++|.+- +..+ +|+ ..|-.+... ..+
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~-Ve~S---NL~---RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGL-VTDA---DVC---TNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCc-cchh---hhc---cccccccccCCcHHHH
Confidence 468899999999999999999999875 87 7899999873 2221 122 222221111 124
Q ss_pred HHHHhcccCCcEEEE
Q 010990 308 LLDAVKVIKPTILIG 322 (496)
Q Consensus 308 L~e~v~~vkptvLIG 322 (496)
..+.++.++|+|-|=
T Consensus 84 Aa~~L~eLNP~V~V~ 98 (287)
T PTZ00245 84 ALGALQRLNPHVSVY 98 (287)
T ss_pred HHHHHHHHCCCcEEE
Confidence 566677777887773
No 316
>PRK06046 alanine dehydrogenase; Validated
Probab=60.54 E-value=39 Score=35.07 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=64.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc----cCCCCCHHH
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 310 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~e 310 (496)
.-.++.|+|+|..|...++.+... .++ ++++++|++- .+ .......+.+. .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~~----~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRTK----SS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCCH----HH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 456999999999988777666432 233 7899888851 11 22222222211 111357888
Q ss_pred HhcccCCcEEEEccCC-CCCCCHHHHHHHHccCCCceEEecC-CCCCCCCCCHHHH
Q 010990 311 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEEA 364 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~-~g~Ft~evv~~M~~~~~rPIIFaLS-NPt~~~E~~peda 364 (496)
+++ .|+++-++.. ...|..+.++. .-.|-++. +-..+.|+.++-.
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~~------g~hV~~iGs~~p~~~El~~~~~ 237 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIKE------GTHINAIGADAPGKQELDPEIL 237 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcCC------CCEEEecCCCCCccccCCHHHH
Confidence 885 8988866442 24677777753 33466664 4335799998854
No 317
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=60.49 E-value=9.9 Score=39.33 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=25.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
|+|+|||.||+..|..+.. .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977653 354 688999764
No 318
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=60.48 E-value=52 Score=36.32 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=29.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+..+||+++|-|-.|+++|+.|.+. |. ++++.|.+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~-----G~-------~v~v~D~~ 39 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKL-----GA-------EVTVSDDR 39 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 4488999999999999999999763 63 68888865
No 319
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=60.33 E-value=12 Score=40.75 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=42.2
Q ss_pred cEEEecCCCCCCc--------ccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccccccCCCCcc
Q 010990 371 RAIFASGSPFDPF--------EYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLI 442 (496)
Q Consensus 371 ~ai~AsGsPf~pv--------~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA~aLA~~v~~e~l~~g~l 442 (496)
.+++|||-=-.|. +++|+.+++.+=-|..-|.|==.++|=++++-+. ..-+.++. +..|+--..++..+
T Consensus 135 ~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~d--i~~~l~~~-ga~vt~~qRs~~~~ 211 (443)
T COG2072 135 FVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVD--IAPELAEV-GASVTLSQRSPPHI 211 (443)
T ss_pred EEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHH--HHHHHHhc-CCeeEEEecCCCce
Confidence 5788999511222 2478899999999999998865555555555321 11111121 13344444455666
Q ss_pred cCCCC
Q 010990 443 YPPFS 447 (496)
Q Consensus 443 ~P~~~ 447 (496)
+|.-.
T Consensus 212 ~~~~~ 216 (443)
T COG2072 212 LPKPL 216 (443)
T ss_pred ecccc
Confidence 66544
No 320
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=60.21 E-value=25 Score=35.95 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=54.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh--chhh-ccccCCCCCHHHH
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPW-AHEHEPVNNLLDA 311 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~--k~~~-a~~~~~~~~L~e~ 311 (496)
...||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+...+.-. ...+ ..+.....+. +.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 69 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSA-ED 69 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcch-hh
Confidence 456899999999999999888653 4 34556655421 11111111000 0000 0000001122 22
Q ss_pred hcccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCCC
Q 010990 312 VKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 355 (496)
Q Consensus 312 v~~vkptvLIG~S~~~g~Ft~evv~~M~~~-~~rPIIFaLSNPt~ 355 (496)
+. .+|++| ++... .-++++++.+... .+..+|+.|-|=-.
T Consensus 70 ~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 70 MP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred cC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 33 368776 44432 2368888887653 35668888988764
No 321
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=60.20 E-value=17 Score=40.44 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.7
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
-...+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 456799999999999999988754 363 48888864
No 322
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=60.18 E-value=36 Score=34.99 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=61.4
Q ss_pred CCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh----------chhhc
Q 010990 231 GGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPWA 299 (496)
Q Consensus 231 g~~l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~----------k~~~a 299 (496)
+..++..||+|.|| |-.|-.+++.|+.. |. +++.+|+. ..+....+.+. +..|-
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g~-------~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFL-----NQ-------TVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIFI 74 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHC-----CC-------EEEEEeCC---CCcchhhhhhhhhccccccCCceEEE
Confidence 44567789999997 99998888888752 42 57777763 11110111110 00111
Q ss_pred c-ccCCCCCHHHHhcccCCcEEEEccCCCCC----------------CCHHHHHHHHccCCCceEEecC
Q 010990 300 H-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 351 (496)
Q Consensus 300 ~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~----------------Ft~evv~~M~~~~~rPIIFaLS 351 (496)
. +-.....|.+++++ ||++|=+.+.... .|..+++++.+..-+.+||+=|
T Consensus 75 ~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 75 QGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 1 11112356677775 9999988875432 1457888887665568998754
No 323
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=59.82 E-value=41 Score=32.08 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=88.0
Q ss_pred hhcCCCcceecccccchHHHHhhcCCCCCceEEEEecC--cccccCCCCCCc--cccchhhhHHHHhhhcCCCCCceeeE
Q 010990 58 IFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPI 133 (496)
Q Consensus 58 i~r~p~glyis~~d~g~i~~~l~n~~~~~v~viVVTDG--~rILGLGDlG~~--gm~I~~GKl~Ly~~~gGi~P~~~lPi 133 (496)
+-+++.|+-++..|.....+.++.+...++.++.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 45679999999999998899998888889988887555 222222234443 46777777777766655 345
Q ss_pred EeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCeeeE---eeeCCCccHHHHHHHHcCCCceeec
Q 010990 134 TVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQ---FEDFANHNAFELLAKYGTTHLVFND 210 (496)
Q Consensus 134 ~LDvgTnn~~Ll~DplYlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~li~---~EDf~~~~af~iL~~yr~~~~~FnD 210 (496)
++=.|.. ......+.++-|.+++++ ++.-.++. ..+.....+.+..+++-...+ -|
T Consensus 126 ~~~~~~~------------------~~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~ 184 (257)
T PF13407_consen 126 LILSGSP------------------GNPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VD 184 (257)
T ss_dssp EEEESST------------------TSHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EE
T ss_pred EeccCCC------------------CchHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ce
Confidence 5444421 112233456778888877 64322222 235677777766555522111 11
Q ss_pred CCCchhHHHHHHHHHHHHHhCC
Q 010990 211 DIQGTASVVLAGVVAALKLIGG 232 (496)
Q Consensus 211 DiQGTa~V~LAgll~Alr~~g~ 232 (496)
=|=.+....+-|++.|++-.|+
T Consensus 185 ~i~~~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 185 AIIACNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEEESSHHHHHHHHHHHHHTTC
T ss_pred EEEeCCChHHHHHHHHHHHcCC
Confidence 1111222444477888888887
No 324
>PRK07589 ornithine cyclodeaminase; Validated
Probab=59.63 E-value=80 Score=33.54 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=69.2
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc
Q 010990 222 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 301 (496)
Q Consensus 222 gll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~ 301 (496)
+.+++-.+... .-.++.|+|+|.-+..-++.++.. ..+ ++|+++|+. ..+ ...+.+.+.+.
T Consensus 117 sala~~~Lar~--da~~l~iiGaG~QA~~~l~a~~~v----r~i------~~V~v~~r~----~~~---a~~~~~~~~~~ 177 (346)
T PRK07589 117 SALAAKYLARP--DSRTMALIGNGAQSEFQALAFKAL----LGI------EEIRLYDID----PAA---TAKLARNLAGP 177 (346)
T ss_pred HHHHHHHhccC--CCcEEEEECCcHHHHHHHHHHHHh----CCc------eEEEEEeCC----HHH---HHHHHHHHHhc
Confidence 33444444332 346899999999887777666653 133 678888663 111 22222222221
Q ss_pred c---CCCCCHHHHhcccCCcEEEEccCCC---CCCCHHHHHHHHccCCCceEEec-CCCCCCCCCCHHHH
Q 010990 302 H---EPVNNLLDAVKVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 364 (496)
Q Consensus 302 ~---~~~~~L~e~v~~vkptvLIG~S~~~---g~Ft~evv~~M~~~~~rPIIFaL-SNPt~~~E~~peda 364 (496)
. ....++++++++ .||++-+.... .+|..++++. .--|-++ |+--.+-|+.++-.
T Consensus 178 ~~~v~~~~~~~~av~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 178 GLRIVACRSVAEAVEG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred CCcEEEeCCHHHHHhc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHHH
Confidence 1 113689999988 99999876422 4688887753 2235555 44334789998754
No 325
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=59.60 E-value=45 Score=35.42 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=26.9
Q ss_pred cceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~G-AG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..||.|+| +|..|-.+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 47899998 999999999998763 54 48888874
No 326
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=59.57 E-value=36 Score=34.41 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=50.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 315 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G-~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v 315 (496)
+||.|+|+|..|..+|..|... | ++ ..+++++|++.- +.+...+..+. ......+..++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~~------~~~~~l~~~~~-~~~~~~~~~e~~~~- 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSKN------EHFNQLYDKYP-TVELADNEAEIFTK- 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCcH------HHHHHHHHHcC-CeEEeCCHHHHHhh-
Confidence 4799999999999999988653 4 21 246777776310 00111111110 00012455566554
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccC-CCceEEecCCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 354 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~~-~rPIIFaLSNPt 354 (496)
+|++| ++..+ ...+++++.+..+- +..+|..++|-.
T Consensus 65 -aDvVi-lavpp-~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 65 -CDHSF-ICVPP-LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred -CCEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 66665 44433 23455666554321 233555555543
No 327
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=59.57 E-value=13 Score=40.08 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=29.0
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+.+..+|+|+|+|.||+..|..|.. .|. ++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G~-------~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AGH-------SVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 3456899999999999999998864 253 68889874
No 328
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=59.47 E-value=11 Score=42.59 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=28.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+..||+|+|+|.||+..|..|.. .|. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 56899999999999999998875 364 48888875
No 329
>PRK06753 hypothetical protein; Provisional
Probab=59.26 E-value=11 Score=38.56 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.8
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 010990 238 RFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~ 257 (496)
+|+|+|||.||+..|..|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999988865
No 330
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=59.08 E-value=12 Score=39.53 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=27.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 283 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi 283 (496)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4689999999999999998764 64 47777775444
No 331
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.07 E-value=18 Score=39.86 Aligned_cols=98 Identities=16% Similarity=0.282 Sum_probs=62.1
Q ss_pred hhHHHHhhhcCCCCCceeeEEe-ecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCc
Q 010990 114 GKLALYTALGGIRPSACLPITV-DVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH 192 (496)
Q Consensus 114 GKl~Ly~~~gGi~P~~~lPi~L-DvgTnn~~Ll~DplYlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~li~~EDf~~~ 192 (496)
||+++-.|.|+.=--...-+.| .|+. |.+| ...+. .=-++.+|-+|||...
T Consensus 247 GKSS~IaAmAn~L~ydIydLeLt~v~~-n~dL-----------------------r~LL~----~t~~kSIivIEDIDcs 298 (457)
T KOG0743|consen 247 GKSSFIAAMANYLNYDIYDLELTEVKL-DSDL-----------------------RHLLL----ATPNKSILLIEDIDCS 298 (457)
T ss_pred CHHHHHHHHHhhcCCceEEeeeccccC-cHHH-----------------------HHHHH----hCCCCcEEEEeecccc
Confidence 7999999999865222555666 6663 4322 23322 2237788999999754
Q ss_pred cHHHHHHHHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 010990 193 NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 244 (496)
Q Consensus 193 ~af~iL~~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GA 244 (496)
|.+=++-+.+-.-+++ .-.-|||+||||++--.-..=.+.||+||=.
T Consensus 299 --~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 299 --FDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred --cccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 4333333333222222 4667999999999876666666788888854
No 332
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=59.00 E-value=12 Score=40.53 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=27.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
...+|+|+|+|.||+..|..|.. .|. ++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 45799999999999999988864 253 68999875
No 333
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.87 E-value=12 Score=38.09 Aligned_cols=32 Identities=31% Similarity=0.543 Sum_probs=26.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.||.|+|||..|.|||.+++.+ |. +++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV-------DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 3899999999999999988754 64 57777764
No 334
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=58.65 E-value=11 Score=40.93 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+.|++.+|+++|+|..|.-++.-|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 358899999999999999999999775 87 789999987
No 335
>PRK07045 putative monooxygenase; Reviewed
Probab=58.65 E-value=12 Score=38.81 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 010990 237 HRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~ 257 (496)
-+|+|+|||.||+..|..|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 336
>PRK07233 hypothetical protein; Provisional
Probab=58.60 E-value=10 Score=39.32 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=25.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888653 5 368888776
No 337
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=58.54 E-value=14 Score=29.63 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.2
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 241 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 241 ~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
|+|||.+|+..|..|.+. | .+|.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999988653 4 48999998643
No 338
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.18 E-value=14 Score=39.46 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=28.5
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+++.+++|+|+|.+|+++|+.|... |. +++++|++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G~-------~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----GA-------KVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 36678999999999999999998753 53 57777764
No 339
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=58.10 E-value=13 Score=39.08 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=29.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC--CcccCCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK--GLIVSSR 287 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~--GLi~~~r 287 (496)
...|+|+|||.+|+..|-+|.. .|+ ++.++++. .+...+|
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~~~~~~~~~r 43 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERAPRELLERGR 43 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccCccccccCce
Confidence 3579999999999999888865 475 57888886 4444444
No 340
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=58.06 E-value=12 Score=36.28 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
.|+|+|||.||+..|-.|.. .|+ ++.++|+...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999987753 364 5888887643
No 341
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=57.64 E-value=41 Score=32.95 Aligned_cols=60 Identities=20% Similarity=0.400 Sum_probs=41.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 316 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 316 (496)
||+|.|| |-.|-.+++.|++ .| .+++.+++. ..+ +. ...++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~d-~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QLD-LT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------ccC-CC-----------CHHHHHHHHHhCC
Confidence 6889996 9888888888765 25 357777763 111 21 1135777888889
Q ss_pred CcEEEEccCCC
Q 010990 317 PTILIGSSGVG 327 (496)
Q Consensus 317 ptvLIG~S~~~ 327 (496)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887653
No 342
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.60 E-value=14 Score=37.35 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+||.|+|+|..|.+||..++.. |. +++++|++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 5899999999999999998653 53 68888874
No 343
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=57.57 E-value=4.8 Score=42.16 Aligned_cols=88 Identities=19% Similarity=0.296 Sum_probs=51.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhch-------hhcc-ccCCCCCHHH
Q 010990 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-------PWAH-EHEPVNNLLD 310 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~-------~~a~-~~~~~~~L~e 310 (496)
|+|+|+|..|-.+++.|.+. ... .++.+.|++ ..+ +..... .+.+ +.....+|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~~---~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PEK---AERLAEKLLGDRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HHH---HHHHHT--TTTTEEEEE--TTTHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HHH---HHHHHhhccccceeEEEEecCCHHHHHH
Confidence 78999999999999988653 111 278888885 111 111111 1111 1122235888
Q ss_pred HhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 311 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
.+++ .|++|-+++.. ++..++++-.+. ..+.|=
T Consensus 64 ~~~~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 64 LLRG--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp HHTT--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred HHhc--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 8887 79999988754 788888876543 344554
No 344
>PLN02268 probable polyamine oxidase
Probab=57.46 E-value=5.6 Score=42.03 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.6
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 010990 238 RFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~ 257 (496)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 79999999999999999976
No 345
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=57.38 E-value=14 Score=38.10 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=26.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..+|+|+|||.||+..|-+|...- +.|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 457999999999999998886520 0154 57888874
No 346
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=57.05 E-value=13 Score=39.54 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
.+|++|=||++|||..|--++++|+.. |+ ++|.++|-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999874 77 78999987643
No 347
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=56.92 E-value=14 Score=39.31 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=47.1
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc--
Q 010990 224 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-- 301 (496)
Q Consensus 224 l~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-- 301 (496)
..++.-....|...|++|+|.+.-..++++++.+ .|+. +..+-+. .... +.....+..+...
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3444444456788999999988888999987754 4873 3333111 1111 1011111111000
Q ss_pred ---cCCCCCHHHHhcccCCcEEEEccC
Q 010990 302 ---HEPVNNLLDAVKVIKPTILIGSSG 325 (496)
Q Consensus 302 ---~~~~~~L~e~v~~vkptvLIG~S~ 325 (496)
......+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 011123667888889999999755
No 348
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=56.89 E-value=13 Score=40.52 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 010990 237 HRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~ 257 (496)
-.|+|+|||.||...|..|..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999988764
No 349
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=56.76 E-value=13 Score=38.80 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=27.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
.+|||+|+|.||+..|+.|... +- .-+|.+++++.-
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~~-----~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----DA-----HIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----Cc-----CCCEEEEeCCCC
Confidence 4899999999999999988542 21 247888887543
No 350
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=56.68 E-value=12 Score=38.54 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=25.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 479999999999999987754 364 57888865
No 351
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=55.84 E-value=12 Score=42.61 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=32.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC-cccCCCcCCCc
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRKDSLQ 292 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G-Li~~~r~~~l~ 292 (496)
++..|+|+|||.+|+..|-.|... .|+ ++.++|++- ....+|...++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~~~~~~~grA~gl~ 78 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERKPGRLELGQADGIA 78 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcCCCCCCCCeeeEEC
Confidence 356899999999999999888651 265 477888763 33334433333
No 352
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=55.78 E-value=17 Score=36.63 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=25.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 355799999999999999988764 65 688888863
No 353
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=55.72 E-value=1.1e+02 Score=31.87 Aligned_cols=135 Identities=17% Similarity=0.249 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceee-cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh
Q 010990 168 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE 246 (496)
Q Consensus 168 defv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~Fn-DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~ 246 (496)
.+.+.. -.+| .++++ .-.... .+.+.+.+| .++|++| .|-..--.=+|+=++.-.+..|. +++.||+++|-..
T Consensus 85 ~Dt~~v-ls~y-~D~iv-~R~~~~-~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-l~g~~v~~vGd~~ 158 (304)
T TIGR00658 85 KDTARV-LSRY-VDGIM-ARVYKH-EDVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFGK-LKGVKVVYVGDGN 158 (304)
T ss_pred HHHHHH-HHHh-CCEEE-EECCCh-HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCC-CCCcEEEEEeCCC
Confidence 334333 3445 44333 443332 233334443 4799999 34344556678887777777664 9999999999863
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc----CCCCCHHHHhcccCCcEEEE
Q 010990 247 AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIG 322 (496)
Q Consensus 247 Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~e~v~~vkptvLIG 322 (496)
.+++-++.++.+ -|+ ++.++-.+++.-.. ...+.-+.+++.. ....++.+++++ +||+.-
T Consensus 159 ---~v~~Sl~~~l~~-~g~-------~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~ 222 (304)
T TIGR00658 159 ---NVCNSLMLAGAK-LGM-------DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYT 222 (304)
T ss_pred ---chHHHHHHHHHH-cCC-------EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEE
Confidence 488888887766 464 68888777763221 1111112333321 123689999998 999987
Q ss_pred cc
Q 010990 323 SS 324 (496)
Q Consensus 323 ~S 324 (496)
.+
T Consensus 223 ~~ 224 (304)
T TIGR00658 223 DV 224 (304)
T ss_pred cC
Confidence 54
No 354
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=55.71 E-value=57 Score=35.41 Aligned_cols=131 Identities=23% Similarity=0.247 Sum_probs=88.7
Q ss_pred CCceee----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 010990 204 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 273 (496)
Q Consensus 204 ~~~~Fn----------DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~ 273 (496)
++|++| |.-.||+--++-|++.| |..-+...++|+.|=|--|-|+|..+. |+. -+
T Consensus 170 ~fPai~VNDs~tK~~FDNrYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~r-------g~G-----A~ 234 (420)
T COG0499 170 KFPAINVNDSVTKSLFDNRYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLR-------GMG-----AR 234 (420)
T ss_pred ccceEeecchhhhcccccccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhh-------cCC-----Ce
Confidence 567665 77899999999999875 555588899999999999999998874 332 24
Q ss_pred EEEEcCCCcccCCCcCCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010990 274 ICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 352 (496)
Q Consensus 274 i~~vD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSN 352 (496)
+++.+- +|.+.-=|. +.-..-++.||.+. .|++|=+.+.-++.+.|..+.|. .-.|.+=+=
T Consensus 235 ViVtEv------------DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~N~G 296 (420)
T COG0499 235 VIVTEV------------DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILANAG 296 (420)
T ss_pred EEEEec------------CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEeccc
Confidence 554322 122211111 11122468899988 89999999999999999999995 444543222
Q ss_pred CCCCCCCCHHH----Hhccc
Q 010990 353 PTSQSECTAEE----AYTWS 368 (496)
Q Consensus 353 Pt~~~E~~ped----a~~~t 368 (496)
- -.-|+..+. +.+|.
T Consensus 297 H-Fd~EI~~~~L~~~~~~~~ 315 (420)
T COG0499 297 H-FDVEIDVAGLEELAVEKR 315 (420)
T ss_pred c-cceeccHHHHHHhhhhHh
Confidence 1 235666654 44554
No 355
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.66 E-value=15 Score=39.93 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.4
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
+...||+|+|+|-+|+++|+.|..
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~ 36 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSE 36 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHH
Confidence 566799999999999999999875
No 356
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=55.38 E-value=43 Score=35.44 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.2
Q ss_pred CcccceEEEeCcChHHHHHHHHHHH
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 3678899999999999999999865
No 357
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=55.36 E-value=13 Score=40.76 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=27.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
-.|||+|+|.+|+++|..+... |+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 4699999999999999888653 75 588888763
No 358
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=55.35 E-value=1e+02 Score=30.28 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=29.9
Q ss_pred CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 306 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 306 ~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
..+.+.++. .|+++..|... .|.-.++++|+ +..|+|.
T Consensus 254 ~~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 254 DDIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred ccHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 457777776 89999888764 58889999998 4778885
No 359
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=55.31 E-value=12 Score=38.50 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=17.5
Q ss_pred EEEeCcChHHHHHHHHHHH
Q 010990 239 FLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~ 257 (496)
|+|+|||.||+..|..|..
T Consensus 2 v~IvGaG~aGl~~A~~L~~ 20 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSR 20 (382)
T ss_pred EEEECccHHHHHHHHHHhc
Confidence 8999999999999999875
No 360
>PLN02463 lycopene beta cyclase
Probab=55.17 E-value=14 Score=40.34 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=25.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 479999999999999988754 365 57888875
No 361
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=55.17 E-value=13 Score=38.72 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999988754 365 588888863
No 362
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.09 E-value=55 Score=34.90 Aligned_cols=108 Identities=24% Similarity=0.315 Sum_probs=58.6
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 315 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v 315 (496)
.+||+|+|.|-.|.++|+.|.+ .|. +++..|.+- . .+.. ..+..+.. ..+..+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~~-~~~~~~~~~-- 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHERY-LENAEEFPE-- 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhhh-cCCcHHHhc--
Confidence 4689999999999998888764 363 588888641 1 1111 11111100 111222233
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 378 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGs 378 (496)
++|++|-..+.+ .-.+.+.++..+. -||| |++. . +-.+..+.+.+.|-.|||
T Consensus 59 ~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~~----~-~~~~~~~~~~~~I~ITGT 110 (418)
T PRK00683 59 QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDIQ----L-AFQTPEFTRYPSLGITGS 110 (418)
T ss_pred CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHHH----H-HHhhhhcCCCCEEEEECC
Confidence 389999777766 4466666666543 3432 3331 1 111112224567888997
No 363
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=55.00 E-value=42 Score=33.75 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||-|+|+|..|.++|..|... |. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 54 57778765
No 364
>PLN02852 ferredoxin-NADP+ reductase
Probab=54.93 E-value=11 Score=41.69 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=30.9
Q ss_pred hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 230 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 230 ~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
...+-...||+|+|||.||+..|..|.... .|. +|.++|+.
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g~-------~Vtv~E~~ 60 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DGA-------RVDIIERL 60 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHHHhhC---CCC-------eEEEEecC
Confidence 334455679999999999999999987531 243 68888886
No 365
>PRK08244 hypothetical protein; Provisional
Probab=54.81 E-value=14 Score=39.93 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=24.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~-----~G~-------~v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL-----AGV-------KTCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 469999999999999988865 375 46666654
No 366
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=54.70 E-value=16 Score=38.07 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=25.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+|+|+|||.+|...|-.|.. .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 479999999999999977754 376 57788864
No 367
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=54.70 E-value=10 Score=40.46 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=26.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..+..||||+|+|.||+..|+.|. + . .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~-~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P-K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c-C-------CCeEEEEcCC
Confidence 456679999999999998877662 1 1 1369999875
No 368
>PLN02676 polyamine oxidase
Probab=54.66 E-value=33 Score=37.68 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=27.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
...+++|+|||.+|++.|..|.+. |. +++.+++++.-
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~-----g~------~~v~vlE~~~~ 61 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA-----GI------EDILILEATDR 61 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc-----CC------CcEEEecCCCC
Confidence 355899999999999999998753 64 34566666543
No 369
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=54.19 E-value=14 Score=39.53 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=24.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
-.|+|+|||.||...|-.|.+ .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 479999999999999988864 365 36666654
No 370
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=54.15 E-value=19 Score=37.68 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
++-.|+|+|||.+|+.+|-.|.+. .|. +++.++|+..+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 455799999999999999988752 253 47999998643
No 371
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=54.15 E-value=14 Score=37.77 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=24.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
|+|+|||.||+..|..|.. .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 8999999999999987764 365 577777764
No 372
>PLN02342 ornithine carbamoyltransferase
Probab=54.11 E-value=1.9e+02 Score=30.97 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=81.8
Q ss_pred HHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceee-cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHH
Q 010990 174 VKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIA 252 (496)
Q Consensus 174 v~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~Fn-DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA 252 (496)
+-.+| .++++ +-.++.. +.+.+.+| .++|+.| .|-..--.=+|+=++.-.+..| +|++.||+++|-+. -++
T Consensus 136 vLs~y-~D~Iv-iR~~~~~-~~~~la~~-~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~---nva 207 (348)
T PLN02342 136 VLSRY-NDIIM-ARVFAHQ-DVLDLAEY-SSVPVINGLTDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGN---NIV 207 (348)
T ss_pred HHHHh-CCEEE-EeCCChH-HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCc---hhH
Confidence 44556 55555 3444333 33444444 4799999 3334566778888887777666 59999999999874 388
Q ss_pred HHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-----CCCCCHHHHhcccCCcEEEEcc
Q 010990 253 ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-----EPVNNLLDAVKVIKPTILIGSS 324 (496)
Q Consensus 253 ~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-----~~~~~L~e~v~~vkptvLIG~S 324 (496)
+-++.++.+ -|+ ++.++-.+|+.-. +.....+++. ....++.|++++ +||+.-.+
T Consensus 208 ~Sli~~~~~-~G~-------~v~~~~P~~~~~~-------~~~~~~a~~~g~~~~~~~~d~~eav~~--aDVvy~~~ 267 (348)
T PLN02342 208 HSWLLLAAV-LPF-------HFVCACPKGYEPD-------AKTVEKARAAGISKIEITNDPAEAVKG--ADVVYTDV 267 (348)
T ss_pred HHHHHHHHH-cCC-------EEEEECCcccccC-------HHHHHHHHHhCCCcEEEEcCHHHHhCC--CCEEEECC
Confidence 888887765 465 5888888776321 1111222211 123789999998 99999875
No 373
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=54.06 E-value=14 Score=38.28 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=26.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999977754 364 58888875
No 374
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=53.87 E-value=17 Score=38.07 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=25.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
..+|+|+|||.||+..|-.|.. .|+ ++.++|+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-----~G~-------~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-----AGI-------DSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-----cCC-------CEEEEEcCC
Confidence 4679999999999999988765 376 366666653
No 375
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=53.78 E-value=16 Score=38.92 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=27.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
-.|||+|||+||+..|..+.+. | .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~-----g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASA-----G-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecCC
Confidence 4699999999999999888652 5 4699999864
No 376
>PRK07588 hypothetical protein; Provisional
Probab=53.72 E-value=16 Score=37.97 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.9
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 010990 238 RFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~ 257 (496)
+|+|+|+|.||+..|-.|..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 79999999999999988864
No 377
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=53.69 E-value=15 Score=41.04 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.||+|+|||.+|+..|+.|++. |+ .+.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-----g~-------~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-----GL-------EVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-----T--------EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------CCeEEecC
No 378
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=53.62 E-value=13 Score=38.91 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 69999999999999988754 365 57788875
No 379
>PRK08013 oxidoreductase; Provisional
Probab=53.59 E-value=16 Score=38.45 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=25.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+-.|+|+|||.+|+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3479999999999999977754 376 57777765
No 380
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=53.51 E-value=1.2e+02 Score=32.21 Aligned_cols=138 Identities=13% Similarity=0.166 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceee-cCCCchhHHHHHHHHHHHHHhC-CCcccceEEEeCc
Q 010990 167 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGA 244 (496)
Q Consensus 167 vdefv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~Fn-DDiQGTa~V~LAgll~Alr~~g-~~l~d~riv~~GA 244 (496)
+.+.++.+ .+| .++++ +-.... .+.+.+.+| .++||.| .+...--+=+||=++.-.+..| +++++.||+++|-
T Consensus 90 l~Dtarvl-s~y-~D~iv-iR~~~~-~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD 164 (334)
T PRK12562 90 IKDTARVL-GRM-YDGIQ-YRGHGQ-EVVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGD 164 (334)
T ss_pred HHHHHHHH-HHh-CCEEE-EECCch-HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECC
Confidence 34444433 445 44333 444332 233344444 4799999 3333445567888887777776 4699999999998
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC----CCCCHHHHhcccCCcEE
Q 010990 245 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE----PVNNLLDAVKVIKPTIL 320 (496)
Q Consensus 245 G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~----~~~~L~e~v~~vkptvL 320 (496)
+.- .+++-++.++.+ -|+ ++.++-.+|+.-.. + .-+.-+.+++... ...++.|++++ +||+
T Consensus 165 ~~~--~v~~S~~~~~~~-~G~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvv 229 (334)
T PRK12562 165 ARN--NMGNSMLEAAAL-TGL-------DLRLVAPQACWPEA--S-LVAECSALAQKHGGKITLTEDIAAGVKG--ADFI 229 (334)
T ss_pred CCC--CHHHHHHHHHHH-cCC-------EEEEECCcccCCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 843 477777776655 465 68888887763221 1 1111123333211 13789999998 9999
Q ss_pred EEcc
Q 010990 321 IGSS 324 (496)
Q Consensus 321 IG~S 324 (496)
.-.+
T Consensus 230 yt~~ 233 (334)
T PRK12562 230 YTDV 233 (334)
T ss_pred EEcC
Confidence 9765
No 381
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=53.31 E-value=16 Score=39.21 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=27.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
-.++|+|||+||+..|..+... | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3699999999999999887653 5 4799999864
No 382
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=53.24 E-value=17 Score=36.55 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=28.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 283 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi 283 (496)
.+-.|+|+|||.||+..|..+.. .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999987754 35 368889887543
No 383
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=53.21 E-value=2.9e+02 Score=28.82 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceeec--CCCchhHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 010990 167 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND--DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 244 (496)
Q Consensus 167 vdefv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~FnD--DiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GA 244 (496)
+.+.++ +-.+| .++++ +-.+..... .-+.+| ..+||.|- +..---+=+||=++.-.+..| ++++.||+++|-
T Consensus 85 i~Dta~-vls~y-~D~iv-iR~~~~~~~-~~~a~~-s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD 158 (301)
T TIGR00670 85 LADTIK-TLSGY-SDAIV-IRHPLEGAA-RLAAEV-SEVPVINAGDGSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGD 158 (301)
T ss_pred HHHHHH-HHHHh-CCEEE-EECCchhHH-HHHHhh-CCCCEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEcc
Confidence 334444 33456 44444 555553332 333344 58999995 344455567788777666666 699999999998
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-C---CCCCHHHHhcccCCcEE
Q 010990 245 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVKVIKPTIL 320 (496)
Q Consensus 245 G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~---~~~~L~e~v~~vkptvL 320 (496)
|.=+ -+++-++.++.+ -|+ ++.++-.+|+- +++.....++.. . ...++.+++++ +||+
T Consensus 159 ~~~~-~v~~Sl~~~~a~-~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~G~~v~~~~d~~~a~~~--aDvv 220 (301)
T TIGR00670 159 LKYG-RTVHSLAEALTR-FGV-------EVYLISPEELR-------MPKEILEELKAKGIKVRETESLEEVIDE--ADVL 220 (301)
T ss_pred CCCC-cHHHHHHHHHHH-cCC-------EEEEECCcccc-------CCHHHHHHHHHcCCEEEEECCHHHHhCC--CCEE
Confidence 6311 455666665554 465 57877777661 222222333321 1 13689999998 9999
Q ss_pred EEccCC
Q 010990 321 IGSSGV 326 (496)
Q Consensus 321 IG~S~~ 326 (496)
.-.+-+
T Consensus 221 yt~~~~ 226 (301)
T TIGR00670 221 YVTRIQ 226 (301)
T ss_pred EECCcc
Confidence 987754
No 384
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=53.19 E-value=1.3e+02 Score=31.81 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceee-cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh
Q 010990 168 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE 246 (496)
Q Consensus 168 defv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~Fn-DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~ 246 (496)
.+.++. -.+| .++++ +-.+. +.+.+.+.+| .++|+.| .|-.---+=+||=++.-.+..| +|+..||+++|.+.
T Consensus 92 ~Dt~rv-ls~y-~D~iv-iR~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g-~l~g~~va~vGd~~ 165 (331)
T PRK02102 92 EDTARV-LGRM-YDGIE-YRGFK-QEIVEELAKY-SGVPVWNGLTDEWHPTQMLADFMTMKEHFG-PLKGLKLAYVGDGR 165 (331)
T ss_pred HHHHHH-Hhhc-CCEEE-EECCc-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCCEEEEECCCc
Confidence 334433 3556 55444 44433 2333334444 4799999 2223445567777776555554 69999999999985
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cC---CCCCHHHHhcccCCcEEEE
Q 010990 247 AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTILIG 322 (496)
Q Consensus 247 Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~---~~~~L~e~v~~vkptvLIG 322 (496)
- ++++-++.++.+ -|+ ++.++-.+|+.-.. + .-+.-+.+++. .. ...++.+++++ +||+.-
T Consensus 166 ~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt 230 (331)
T PRK02102 166 N--NMANSLMVGGAK-LGM-------DVRICAPKELWPEE--E-LVALAREIAKETGAKITITEDPEEAVKG--ADVIYT 230 (331)
T ss_pred c--cHHHHHHHHHHH-cCC-------EEEEECCcccccCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEE
Confidence 3 488888877665 465 68888777663221 1 11111223322 11 13689999998 999987
Q ss_pred cc
Q 010990 323 SS 324 (496)
Q Consensus 323 ~S 324 (496)
.+
T Consensus 231 ~~ 232 (331)
T PRK02102 231 DV 232 (331)
T ss_pred cC
Confidence 53
No 385
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=53.18 E-value=18 Score=39.00 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=27.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
...+|+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 45799999999999999888754 25 368888875
No 386
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=53.05 E-value=18 Score=41.75 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=28.9
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
-...+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 4577999999999999999998653 64 68889874
No 387
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=52.94 E-value=17 Score=38.94 Aligned_cols=31 Identities=26% Similarity=0.616 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+++|+|||.||+.+|..|.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988864 25 468888874
No 388
>PRK06185 hypothetical protein; Provisional
Probab=52.92 E-value=16 Score=38.02 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=26.7
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
+..|+|+|||.+|+..|-.|.. .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4579999999999999877754 475 577888764
No 389
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=52.67 E-value=16 Score=43.96 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
-+..||+|+|||.||+..|..|... |. ++.++|++
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 4567999999999999999998653 64 58888875
No 390
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=52.52 E-value=17 Score=37.13 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
...|+|+|||.+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 34699999999999999888652 5 4689999764
No 391
>PRK14852 hypothetical protein; Provisional
Probab=51.92 E-value=14 Score=44.19 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+|++.||+|+|+|..|.-||..|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 469999999999999999999988774 87 789999987
No 392
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=51.70 E-value=71 Score=34.52 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=28.0
Q ss_pred CHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 307 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 307 ~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
++.+.+.. .|+++=.|-.. .|.-.++++|+ +..|+|.
T Consensus 363 ~v~~~l~~--aDv~vlpS~~E-g~p~~vlEAma--~G~PVVa 399 (475)
T cd03813 363 NVKEYLPK--LDVLVLTSISE-GQPLVILEAMA--AGIPVVA 399 (475)
T ss_pred cHHHHHHh--CCEEEeCchhh-cCChHHHHHHH--cCCCEEE
Confidence 45566654 88888766544 58889999998 5889887
No 393
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=51.64 E-value=27 Score=36.53 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=50.2
Q ss_pred cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcC
Q 010990 210 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 289 (496)
Q Consensus 210 DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~ 289 (496)
|+..+.-+=-+|.-+.+.........+.+++|+|+|+.|+..+.+. . ..|. ++|+++|.. +.|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a-~----~~Ga------~~Viv~d~~----~~R-- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALA-K----LLGA------SVVIVVDRS----PER-- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHH-H----HcCC------ceEEEeCCC----HHH--
Confidence 4445544444555544422222222333999999999997663222 2 2465 679988763 222
Q ss_pred CCchhchhhccc--cCCCC-CHHHHh----cccCCcEEEEccC
Q 010990 290 SLQHFKKPWAHE--HEPVN-NLLDAV----KVIKPTILIGSSG 325 (496)
Q Consensus 290 ~l~~~k~~~a~~--~~~~~-~L~e~v----~~vkptvLIG~S~ 325 (496)
|...++.++-+ ..... ...+.+ .+...|+.|=+|+
T Consensus 206 -l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 206 -LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred -HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 22222222211 11111 222223 2236899999998
No 394
>PRK07538 hypothetical protein; Provisional
Probab=51.60 E-value=17 Score=38.19 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.7
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 010990 238 RFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~ 257 (496)
+|+|+|||.||+..|-.|..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999988877654
No 395
>PRK12831 putative oxidoreductase; Provisional
Probab=51.45 E-value=19 Score=39.16 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
...+|+|+|+|.||+..|..|... |. ++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 467999999999999999888753 53 68888864
No 396
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=51.37 E-value=50 Score=35.21 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
||.|+|+|..|..+|..|... |. +++++|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G~-------~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----GH-------EVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----CC-------eEEEEECC
Confidence 799999999999999998753 53 58888874
No 397
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=51.26 E-value=19 Score=41.06 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=27.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
...||+|+|+|.||+..|..|.. .|. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KGH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 45799999999999999988865 253 58888865
No 398
>PRK05868 hypothetical protein; Validated
Probab=51.22 E-value=19 Score=37.63 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 010990 237 HRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~ 257 (496)
.+|+|+|||.+|+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999877754
No 399
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=51.06 E-value=61 Score=33.56 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCC--CceEEecCCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASFNE--KPLILALSNPT 354 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~~~--rPIIFaLSNPt 354 (496)
+-|++||+|..|. |++++..+....+ -|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999886 8999988854333 35544334554
No 400
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=50.82 E-value=18 Score=40.14 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=27.3
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+-.|+|+|+|..|+++|..|... |+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 35799999999999999998753 65 58889875
No 401
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=50.82 E-value=19 Score=36.91 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=26.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 282 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GL 282 (496)
.|+|+|||.+|+.+|-.|.+ .|. ++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g~-------~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HGK-------KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 58999999999999988864 253 6888998654
No 402
>PRK06834 hypothetical protein; Provisional
Probab=50.75 E-value=20 Score=39.28 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=28.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
.+..|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 45789999999999999988865 376 577888764
No 403
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=50.71 E-value=19 Score=37.77 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=26.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3479999999999999977754 375 47788874
No 404
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=50.69 E-value=1e+02 Score=31.19 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=29.2
Q ss_pred CHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 307 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 307 ~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
++.+.++. .|++|-.|... .|.--++++|+ +..|||.
T Consensus 265 ~~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 265 DVPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred CHHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 35566766 89999888754 59999999998 5788887
No 405
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=50.50 E-value=3.1e+02 Score=29.06 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceee--cCCCchhHHHHHHHHHHHHHh---CCCcccceEEE
Q 010990 167 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLI---GGTLAEHRFLF 241 (496)
Q Consensus 167 vdefv~av~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~Fn--DDiQGTa~V~LAgll~Alr~~---g~~l~d~riv~ 241 (496)
+.+.++ +-.+| .++++ .-.+......+ +.+| .++||.| |+..---+=+||=++.-.+.. |+++++.||++
T Consensus 90 l~Dtar-vls~y-~D~Iv-iR~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~ 164 (338)
T PRK08192 90 LYDTAR-VLSTY-SDVIA-MRHPDAGSVKE-FAEG-SRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAM 164 (338)
T ss_pred HHHHHH-HHHHc-CCEEE-EeCCchhHHHH-HHHh-CCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEE
Confidence 344444 44456 44333 44444333222 2333 4799999 433334445666666655443 45799999999
Q ss_pred eCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc----CCCCCHHHHhcccCC
Q 010990 242 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKP 317 (496)
Q Consensus 242 ~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~e~v~~vkp 317 (496)
+|.+.=+ -+++-++.++....|+ +++++-.+|+- +++.-...++.. ....++.|++++ +
T Consensus 165 vGD~~~~-rv~~Sl~~~l~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~ea~~~--a 227 (338)
T PRK08192 165 VGDLKFG-RTVHSLSRLLCMYKNV-------SFTLVSPKELA-------MPDYVISDIENAGHKITITDQLEGNLDK--A 227 (338)
T ss_pred ECcCCCC-chHHHHHHHHHHhcCC-------EEEEECCcccc-------CCHHHHHHHHHcCCeEEEEcCHHHHHcc--C
Confidence 9997411 2334433332221254 68888777762 122211222221 123689999998 9
Q ss_pred cEEEEccCCCCCC
Q 010990 318 TILIGSSGVGRTF 330 (496)
Q Consensus 318 tvLIG~S~~~g~F 330 (496)
||+.-.+.|..-|
T Consensus 228 Dvvyt~~~q~e~~ 240 (338)
T PRK08192 228 DILYLTRIQEERF 240 (338)
T ss_pred CEEEEcCcccccc
Confidence 9999887654334
No 406
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=50.47 E-value=46 Score=36.03 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=67.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh---chhhcc-ccCCCCCHHHHh
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPWAH-EHEPVNNLLDAV 312 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~---k~~~a~-~~~~~~~L~e~v 312 (496)
.+|+++|||--|-.+|..|++ .|- .+|++.|+. .+....+... +.+... +....+.|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~-----~~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ-----NGD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh-----CCC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 479999999999999999875 242 579988884 1100001111 122222 223346799999
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecC
Q 010990 313 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 377 (496)
Q Consensus 313 ~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsG 377 (496)
++ .|+.|-+-- +-++..++++-.+.- - -..=.||=.....-.-++|.+. .=.+|.-.|
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~~g-v-~yvDts~~~~~~~~~~~~a~~A-git~v~~~G 124 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIKTG-V-DYVDTSYYEEPPWKLDEEAKKA-GITAVLGCG 124 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHHhC-C-CEEEcccCCchhhhhhHHHHHc-CeEEEcccC
Confidence 98 598887654 457888887765422 2 2333444322222233344332 224555666
No 407
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=50.42 E-value=18 Score=37.87 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
-|+|+|||.||+..|..|.++ |. .+.++|+-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCC
Confidence 489999999999999998664 65 578888754
No 408
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=50.37 E-value=67 Score=31.49 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=43.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc----hhhcc-ccCCCCCHHHH
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 311 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k----~~~a~-~~~~~~~L~e~ 311 (496)
||+|.|| |..|-.+++.|+.. |- .-+++.+|+... ..+.+.+.... ..+.. +-....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 88888888877543 31 136777775211 01111111110 11111 11222467888
Q ss_pred hcccCCcEEEEccCCC
Q 010990 312 VKVIKPTILIGSSGVG 327 (496)
Q Consensus 312 v~~vkptvLIG~S~~~ 327 (496)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 409
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=50.29 E-value=3.7e+02 Score=29.21 Aligned_cols=93 Identities=25% Similarity=0.405 Sum_probs=51.0
Q ss_pred eEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHH---------HHHHHhh-CCCeeeEeeeCCCccHHHHHHHH
Q 010990 132 PITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFM---------SAVKQNY-GEKVLIQFEDFANHNAFELLAKY 201 (496)
Q Consensus 132 Pi~LDvgTnn~~Ll~DplYlG~r~~R~~g~~y~~~vdefv---------~av~~~f-Gp~~li~~EDf~~~~af~iL~~y 201 (496)
|.+.+.-..=+++.+||-+. +||+.+..+++ +.+.+.+ |.+..+-.||+....+|++-
T Consensus 25 ~~~~~~~~~~~~~~~~~~f~---------~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r--- 92 (397)
T PRK04346 25 PALEELEEAYEKAKNDPEFQ---------AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKIN--- 92 (397)
T ss_pred HHHHHHHHHHHHHhcCHHHH---------HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHH---
Confidence 33333333345566676652 45555555542 3455566 45677777777766666431
Q ss_pred cCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEE-eCcChHHHHHHHHHHH
Q 010990 202 GTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF-LGAGEAGTGIAELIAL 257 (496)
Q Consensus 202 r~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~-~GAG~Ag~GiA~ll~~ 257 (496)
.++.-++.|.+ .|+ .+++. .|||..|+++|-....
T Consensus 93 ----------------~al~~~l~A~~-~Gk----~~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 93 ----------------NVLGQALLAKR-MGK----KRIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred ----------------HHHHHHHHHHH-cCC----CeEEEecCcHHHHHHHHHHHHH
Confidence 12333333332 232 36666 6888888888766543
No 410
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=50.20 E-value=18 Score=43.63 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=27.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
...+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 35799999999999999998865 364 58888875
No 411
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=50.14 E-value=25 Score=36.36 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=27.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..++|+|+|+|.||+..|..|.+ .| .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 45799999999999999888864 25 468889885
No 412
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=50.11 E-value=30 Score=35.29 Aligned_cols=145 Identities=19% Similarity=0.296 Sum_probs=88.3
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCC-CCCHH
Q 010990 231 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP-VNNLL 309 (496)
Q Consensus 231 g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~-~~~L~ 309 (496)
|..++ +++|+||=--|.+||+.|-.. + +|+++|.+ +|.+.+..+.-. ...+.
T Consensus 39 ~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~~ 91 (252)
T PF06690_consen 39 GEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFRN 91 (252)
T ss_pred ccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeeccC
Confidence 44555 899999999999999988532 2 79999874 333333311100 01111
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCCcccCCee
Q 010990 310 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 389 (496)
Q Consensus 310 e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGsPf~pv~~~G~~ 389 (496)
+ . ..+||++|=++|-||+ +++.++.. .|=+|=.=||. ++-+=.+.++. |...
T Consensus 92 ~-~-~~~~DlIID~TGlGGv-~~~~Ls~~-----~p~v~IVEdP~--~~~sD~~I~~~------------------~nt~ 143 (252)
T PF06690_consen 92 G-L-EGNPDLIIDTTGLGGV-DPDFLSKF-----NPKVFIVEDPK--GDGSDKTIYEI------------------NNTE 143 (252)
T ss_pred C-C-CCCCCEEEECCCCCCC-CHHHHhcc-----CCCEEEEECCC--ccCcchhhhhc------------------ccHH
Confidence 1 1 2479999999999985 99999876 36677778887 34322222222 1122
Q ss_pred eCcc--Ccccccccchh--hHHHHHhCCcccCHHHHHHHHHHHHh
Q 010990 390 FVPG--QANNAYIFPGF--GLGLVISGAIRVHDDMLLAASEALAK 430 (496)
Q Consensus 390 ~~p~--Q~NN~~iFPGi--glG~l~~~a~~itd~m~~aAA~aLA~ 430 (496)
..+. -+.+..+.=-- |+.+=.||--++|=+.+..|+..+=+
T Consensus 144 erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i~~ 188 (252)
T PF06690_consen 144 ERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEIEE 188 (252)
T ss_pred HHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHHHh
Confidence 2222 23344444444 56666777777888877777666543
No 413
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.09 E-value=20 Score=39.01 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.8
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
++++||+|+|.|..|.+.|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999875
No 414
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=49.97 E-value=40 Score=38.62 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=47.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 316 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 316 (496)
.||.|+|+|..|..+|..+... |. ..+++.+|++ ..+ +...+ .+........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~-~~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAV-SLGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHH-HCCCCCcccCCHHHHhcC--
Confidence 6899999999999999998653 53 1358888874 111 11110 010000122356666654
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcc
Q 010990 317 PTILIGSSGVGRTFTKEVIEAMASF 341 (496)
Q Consensus 317 ptvLIG~S~~~g~Ft~evv~~M~~~ 341 (496)
+|++| ++..+ ...+++++.++..
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~ 86 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPL 86 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHh
Confidence 66666 44433 2456777776643
No 415
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=49.83 E-value=63 Score=32.47 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=25.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.||.|+|.|..|..+|..+.. .|. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 479999999999999999865 253 47777764
No 416
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=49.68 E-value=20 Score=40.64 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 479999999999999999865 364 699999874
No 417
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=49.63 E-value=18 Score=37.42 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=26.7
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 3579999999999999977754 365 588888864
No 418
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=49.60 E-value=96 Score=31.75 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=50.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 316 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 316 (496)
.||.|+|.|+.+. +|+.+...|.+ .| ++.++++...... . .. . .+. +
T Consensus 48 ~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~~~---------~--~~-------~----~~~--~ 94 (326)
T PRK10892 48 GKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEAAH---------G--DL-------G----MVT--P 94 (326)
T ss_pred CeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHhhc---------c--cc-------c----cCC--C
Confidence 6999999998875 77777666654 34 3444433211100 0 00 0 011 4
Q ss_pred CcEEEEccCCCCCCCHHHHHHHH--ccCCCceEEecCCCC
Q 010990 317 PTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 354 (496)
Q Consensus 317 ptvLIG~S~~~g~Ft~evv~~M~--~~~~rPIIFaLSNPt 354 (496)
-|++|++|..|. |+++++.+. +...-|+|-==+||.
T Consensus 95 ~d~~I~iS~sG~--t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 95 QDVVIAISNSGE--SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 689999999875 889988874 444557666555554
No 419
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=49.50 E-value=17 Score=39.50 Aligned_cols=35 Identities=34% Similarity=0.599 Sum_probs=27.7
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+||||+|+|-+|+..|..|.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~------~----~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL------P----DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC------C----CCcEEEEeCC
Confidence 579999999999999999886532 1 1368999985
No 420
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=49.50 E-value=98 Score=34.26 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=27.1
Q ss_pred HHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 308 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 308 L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
+.+..+. .++++=.|..- .|.--++++|+ +..|+|-
T Consensus 386 ~~~~~~~--adv~v~pS~~E-gfgl~~lEAma--~G~PVI~ 421 (500)
T TIGR02918 386 LSEVYKD--YELYLSASTSE-GFGLTLMEAVG--SGLGMIG 421 (500)
T ss_pred HHHHHHh--CCEEEEcCccc-cccHHHHHHHH--hCCCEEE
Confidence 4555655 88899878654 59999999998 5667765
No 421
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=49.47 E-value=19 Score=39.63 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.1
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 010990 236 EHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
..+|+|+|||.+|+..|..|..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999988764
No 422
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=49.38 E-value=16 Score=37.82 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.8
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 010990 238 RFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~ 257 (496)
+|+|+|||.||+..|-.|..
T Consensus 3 dv~IvGaG~aGl~~A~~L~~ 22 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ 22 (403)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988865
No 423
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=49.17 E-value=26 Score=35.46 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=30.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+..||+++|+|.-|.-+++.|+.+-....++..... -+|.++|.+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g-~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGG-LAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCC-CEEEEECCC
Confidence 467999999999999999999875100001110000 289999987
No 424
>PRK12829 short chain dehydrogenase; Provisional
Probab=49.17 E-value=53 Score=31.49 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=22.8
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+++.+++|.||. . +|...++..+.+ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~-g--~iG~~~a~~L~~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGA-S--GIGRAIAEAFAE-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCC-C--cHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 3788999999984 1 333444444433 364 58888763
No 425
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=48.94 E-value=1.3e+02 Score=31.87 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=79.1
Q ss_pred HHHhhCCCeeeEeeeCCCccHHHHHHHHcCCCceee-cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHH
Q 010990 174 VKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIA 252 (496)
Q Consensus 174 v~~~fGp~~li~~EDf~~~~af~iL~~yr~~~~~Fn-DDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA 252 (496)
+-.+| .++++ .-..+.... +.+.+| .++||+| .|-..--+=+|+=++.-.+....++++.||+++|-+.. .++
T Consensus 96 vls~y-~D~iv-iR~~~~~~~-~~~a~~-s~vPVINa~~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~--~v~ 169 (332)
T PRK04284 96 VLGGM-YDGIE-YRGFSQRTV-ETLAEY-SGVPVWNGLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRN--NVA 169 (332)
T ss_pred HHHHh-CCEEE-EecCchHHH-HHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCc--chH
Confidence 34556 44444 344433322 223333 5799999 23334455677887776665234699999999999842 578
Q ss_pred HHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc----CCCCCHHHHhcccCCcEEEEcc
Q 010990 253 ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSS 324 (496)
Q Consensus 253 ~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~e~v~~vkptvLIG~S 324 (496)
+-++.++.+ -|+ ++.++=.+|+.-.. +.+... +.+++.. ....++.|++++ +||+.-.+
T Consensus 170 ~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~~~~~~-~~~~~~~g~~~~~~~d~~ea~~~--aDvvy~~~ 232 (332)
T PRK04284 170 NALMQGAAI-MGM-------DFHLVCPKELNPDD--ELLNKC-KEIAAETGGKITITDDIDEGVKG--SDVIYTDV 232 (332)
T ss_pred HHHHHHHHH-cCC-------EEEEECCccccCCH--HHHHHH-HHHHHHcCCeEEEEcCHHHHhCC--CCEEEECC
Confidence 887777665 465 58888777763221 111111 2333321 123689999997 99998764
No 426
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=48.94 E-value=25 Score=37.02 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=25.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 010990 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 283 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi 283 (496)
|+|+|||.||+.+|..|.+. + .|+ ++.++|+.-.+
T Consensus 2 viIvGaG~AGl~lA~~L~~~--~-~g~-------~V~lle~~~~~ 36 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA--R-PDF-------RIRVIEAGRTI 36 (370)
T ss_pred EEEECccHHHHHHHHHHHhc--C-CCC-------eEEEEeCCCCC
Confidence 79999999999999877643 1 243 57888876433
No 427
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.89 E-value=65 Score=34.57 Aligned_cols=109 Identities=15% Similarity=0.226 Sum_probs=57.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 316 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 316 (496)
+||.|+|.|-+|++.+++|... .| .-++...|.+=. ....+.|.. ...+.. ..-+ .+.+. +
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~---g~~~-~~~~~--~ 68 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHS---GGWN-LEWLL--E 68 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEe---CCCC-hHHhc--c
Confidence 6899999999999999998753 22 025777886411 000000110 001100 0012 23344 3
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 010990 317 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 378 (496)
Q Consensus 317 ptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~AsGs 378 (496)
+|.+|=-++.+ .-++++.++..+ .-||+ +.+|. +.++.+.+.|-.|||
T Consensus 69 ~d~vV~SpgI~-~~~p~~~~a~~~--gi~i~-------~~~el----~~~~~~~~~I~VTGT 116 (438)
T PRK04663 69 ADLVVTNPGIA-LATPEIQQVLAA--GIPVV-------GDIEL----FAWAVDKPVIAITGS 116 (438)
T ss_pred CCEEEECCCCC-CCCHHHHHHHHC--CCcEE-------EHHHH----HHhhcCCCEEEEeCC
Confidence 88777545544 346666666543 46664 12332 333345678888997
No 428
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=48.59 E-value=20 Score=39.87 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=25.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
.|+|+|||.||+..|..+... | .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----K-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEecCC
Confidence 699999999999999887642 4 3688888753
No 429
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=48.57 E-value=14 Score=31.84 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=27.4
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
+|++.+++|+|+|..|..=+++|+++ | .++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57889999999999999888888653 4 4688887763
No 430
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=48.55 E-value=20 Score=38.23 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999988653 5 469999975
No 431
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=48.45 E-value=2.3e+02 Score=26.29 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=50.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 315 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v 315 (496)
+..++++|...... ++.+.. .|. .++|++|...+-.. + -..|+ .-|.++++..
T Consensus 30 ~v~~v~~G~~~~~~--~~~~~~-----~Ga------d~v~~~~~~~~~~~------~--~~~~a------~al~~~i~~~ 82 (168)
T cd01715 30 EVTALVIGSGAEAV--AAALKA-----YGA------DKVLVAEDPALAHY------L--AEPYA------PALVALAKKE 82 (168)
T ss_pred CEEEEEECCChHHH--HHHHHh-----cCC------CEEEEecChhhccc------C--hHHHH------HHHHHHHHhc
Confidence 46788888876653 344332 376 67898876533111 0 11333 3478888988
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCceE
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 347 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~~~rPII 347 (496)
+|++++.-++. +++++--..|..-.-|++
T Consensus 83 ~p~~Vl~~~t~---~g~~la~rlAa~L~~~~v 111 (168)
T cd01715 83 KPSHILAGATS---FGKDLAPRVAAKLDVGLI 111 (168)
T ss_pred CCCEEEECCCc---cccchHHHHHHHhCCCce
Confidence 99988876663 466777766655566654
No 432
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=48.41 E-value=23 Score=37.27 Aligned_cols=33 Identities=15% Similarity=0.358 Sum_probs=25.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK-----AGI-------DNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH-----CCC-------CEEEEECCC
Confidence 579999999999999977754 476 467777653
No 433
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=48.40 E-value=15 Score=44.20 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
++|.+.+|+|+|+|.-|.-||..|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 468889999999999999999999875 87 7899999873
No 434
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=48.38 E-value=19 Score=33.35 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=25.8
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+++.+|+|+|+|.+|+-+|..|... | +++.++=++
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~-----g-------~~V~~~~R~ 199 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKA-----G-------KSVTLVTRS 199 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTT-----C-------SEEEEEESS
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhh-----C-------CEEEEEecC
Confidence 57889999999999999888877542 3 577766443
No 435
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=48.37 E-value=20 Score=41.51 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=57.0
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCC--------CCCCCHHHHhcccCCcEEEecCCCCC
Q 010990 310 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFASGSPFD 381 (496)
Q Consensus 310 e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~--------~~E~~peda~~~t~G~ai~AsGsPf~ 381 (496)
++=+.++|+++|..++. .++-.-+....++-+|=|.+=..||-. ..+-|.++..++.. . |+..-=..
T Consensus 413 ~l~~~~~~~~ilasNTS--sl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~-~--~~~~lgk~ 487 (715)
T PRK11730 413 EVEQKVREDTILASNTS--TISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVV-A--YASKMGKT 487 (715)
T ss_pred HHHhhCCCCcEEEEcCC--CCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHH-H--HHHHhCCc
Confidence 33345689999987774 355444444444445558888999863 22333333333211 0 11111134
Q ss_pred CcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHHH
Q 010990 382 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 425 (496)
Q Consensus 382 pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA 425 (496)
||..+ +.||-.=|-..+|-+--++.+...- .|.+-+.+|.
T Consensus 488 pv~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 488 PIVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred eEEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 55542 6677777777777655544343332 4555555443
No 436
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=48.20 E-value=20 Score=39.19 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=27.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..|+|+|+|.+|+++|..+.. .|+ ++.+++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 479999999999999999975 365 58889876
No 437
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=48.16 E-value=21 Score=38.44 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=26.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
|++|+|+|+||+..|..+.+. | +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-----g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-----G-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEECC
Confidence 899999999999999888652 5 469999975
No 438
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=48.07 E-value=39 Score=34.25 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 279 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~ 279 (496)
.||.|+|+|..|-.+|.-|+. .|.- ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 379999999999999988864 2531 2346888886
No 439
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=48.03 E-value=21 Score=38.27 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.1
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+||+|||+||+..|..+.+ .| .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999888865 25 479999975
No 440
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=47.97 E-value=23 Score=38.70 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=27.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
...+|+|+|+|.||+..|..|.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 34799999999999999988864 253 58888865
No 441
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=47.77 E-value=92 Score=30.92 Aligned_cols=85 Identities=26% Similarity=0.384 Sum_probs=58.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 315 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v 315 (496)
+-||+|.|.|-.| -|++-+++-|++ -|. +.|+|-.-=.. | ++| =+|+.
T Consensus 39 ~gkv~V~G~GkSG-~Igkk~Aa~L~s-~G~-------~a~fv~p~ea~----------------h-----gdl-g~i~~- 86 (202)
T COG0794 39 KGKVFVTGVGKSG-LIGKKFAARLAS-TGT-------PAFFVGPAEAL----------------H-----GDL-GMITP- 86 (202)
T ss_pred CCcEEEEcCChhH-HHHHHHHHHHHc-cCC-------ceEEecCchhc----------------c-----CCc-cCCCC-
Confidence 5699999999999 689999888876 364 34444221000 0 111 12333
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--ccCCCceEEecCCCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPTS 355 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~--~~~~rPIIFaLSNPt~ 355 (496)
=|++|-.|+.|. |+|++..+. +.-.-|||-==|||.|
T Consensus 87 -~DvviaiS~SGe--T~el~~~~~~aK~~g~~liaiT~~~~S 125 (202)
T COG0794 87 -GDVVIAISGSGE--TKELLNLAPKAKRLGAKLIAITSNPDS 125 (202)
T ss_pred -CCEEEEEeCCCc--HHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 689999999886 899988874 4556788887888885
No 442
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=47.64 E-value=23 Score=36.97 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
..|+|+|||.+|+.+|-.|.... .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887530 13 478999986
No 443
>PRK09186 flagellin modification protein A; Provisional
Probab=47.62 E-value=36 Score=32.53 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=21.8
Q ss_pred cccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 234 LAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 234 l~d~riv~~GAG-~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+++.+++|.||+ ..|..+|+.|++ +|. ++.+++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~-----~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILE-----AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------EEEEEecC
Confidence 456789999984 445555555543 354 46767653
No 444
>PRK06126 hypothetical protein; Provisional
Probab=47.58 E-value=24 Score=38.79 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=26.7
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
-.+.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~ 39 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERK 39 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 345789999999999999988765 365 46667655
No 445
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=47.53 E-value=12 Score=39.85 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=29.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh---cCCChhhhcC----cEEEEcCCCcc
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQ---TKAPVEETRK----KICLVDSKGLI 283 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~---~G~~~eeA~~----~i~~vD~~GLi 283 (496)
++|+|+|||-||+..|..|.+.-... .-++.=||+. +++-....|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 37999999999999999997642100 0145555554 44544444543
No 446
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=47.51 E-value=24 Score=42.47 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=28.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+..||+|+|+|.||+..|..|... |. ++.++|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecC
Confidence 457999999999999999998753 54 58888876
No 447
>PRK14694 putative mercuric reductase; Provisional
Probab=47.40 E-value=24 Score=38.05 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888763 5 479999975
No 448
>PRK11445 putative oxidoreductase; Provisional
Probab=47.34 E-value=17 Score=37.64 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=23.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.|+|+|||.||...|..|... -++.++|++
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-------------~~V~liE~~ 32 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-------------MKVIAIDKK 32 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-------------CCEEEEECC
Confidence 589999999999999877532 257777765
No 449
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=47.34 E-value=35 Score=35.30 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=28.1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcc--CCCceEEecCCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASF--NEKPLILALSNPT 354 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~--~~rPIIFaLSNPt 354 (496)
+-|++||+|..|. |++++..+... ..-|+|.=-+||.
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~ 164 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPK 164 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5799999999876 99999988533 3347777666776
No 450
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=47.21 E-value=2.4e+02 Score=32.71 Aligned_cols=106 Identities=16% Similarity=0.045 Sum_probs=55.3
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCC--------CCCCHHHHhcccCCcEEEecCCCCC
Q 010990 310 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFD 381 (496)
Q Consensus 310 e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFaLSNPt~~--------~E~~peda~~~t~G~ai~AsGsPf~ 381 (496)
+.=+..+|+++|..++.+ ++-.-+.....+-+|=|.+=.-||-.. .+-|-+++.++.. + |+..-=..
T Consensus 410 ~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~-~--~~~~~gk~ 484 (708)
T PRK11154 410 EVEQNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTV-A--LAKKQGKT 484 (708)
T ss_pred HHHhhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHH-H--HHHHcCCc
Confidence 333456899999877743 554444444444555588888898742 1223223222210 0 11111123
Q ss_pred CcccCCeeeCccCcccccccchhhHHHHHhCCcccCHHHHHHH
Q 010990 382 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 424 (496)
Q Consensus 382 pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aA 424 (496)
||.+ .+.||..=|-..+|-+--++.+...- ++.+-+-.|
T Consensus 485 pv~v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a 523 (708)
T PRK11154 485 PIVV---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAA 523 (708)
T ss_pred eEEE---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH
Confidence 4444 24667777777777666555554432 354444444
No 451
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=47.17 E-value=16 Score=32.48 Aligned_cols=32 Identities=19% Similarity=0.489 Sum_probs=24.6
Q ss_pred CChhhhHHHHHHHHHHHHH---hhCCCeeeEeeeC
Q 010990 158 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDF 189 (496)
Q Consensus 158 ~~g~~y~~~vdefv~av~~---~fGp~~li~~EDf 189 (496)
++.++||.|+|+|+..|.+ .||+....+||-|
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~ 61 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGF 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEE
Confidence 5678999999999998888 4666555555554
No 452
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=47.12 E-value=23 Score=37.24 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.8
Q ss_pred eEEEeCcChHHHHHHHHHHHH
Q 010990 238 RFLFLGAGEAGTGIAELIALE 258 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~ 258 (496)
||+|+|||.||+..|..|...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~ 22 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH 22 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 799999999999999998753
No 453
>PRK07190 hypothetical protein; Provisional
Probab=47.11 E-value=24 Score=38.65 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=25.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
...|+|+|||.+|+-.|-.|.. .|+ ++.++|+.-
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCCC
Confidence 3579999999999988876643 375 477888763
No 454
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=47.06 E-value=75 Score=33.23 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=56.6
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh--chhhcc-ccCCCCCHHH
Q 010990 235 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLD 310 (496)
Q Consensus 235 ~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~--k~~~a~-~~~~~~~L~e 310 (496)
+++||+|.|+ |-.|-.+++.|.+ .|. +++.+|+..- ..+... ...+-. +.....++..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G~-------~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EGH-------YIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CCC-------EEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4579999998 9999888888865 253 6888886421 001110 111111 1111123455
Q ss_pred HhcccCCcEEEEccCCCC--C---------------CCHHHHHHHHccCCCceEEecC
Q 010990 311 AVKVIKPTILIGSSGVGR--T---------------FTKEVIEAMASFNEKPLILALS 351 (496)
Q Consensus 311 ~v~~vkptvLIG~S~~~g--~---------------Ft~evv~~M~~~~~rPIIFaLS 351 (496)
+++ ++|++|=+.+..+ . .+..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 555 4899998875431 0 2355777777666678888644
No 455
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=47.05 E-value=22 Score=38.34 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34799999999999999888653 5 479999975
No 456
>PLN02568 polyamine oxidase
Probab=46.96 E-value=13 Score=41.56 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHH
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALE 258 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~ 258 (496)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999764
No 457
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=46.94 E-value=22 Score=39.04 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHH
Q 010990 235 AEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
.+.+|+|+|||.+|+..|..|..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 45689999999999999988864
No 458
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=46.93 E-value=1.6e+02 Score=29.41 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=29.4
Q ss_pred CHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 307 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 307 ~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
.+.+.+.. .|++|-.|... .|.--++++|+ +..|+|-
T Consensus 263 ~~~~~~~~--~d~~v~ps~~E-~~~~~~~EAma--~g~PvI~ 299 (371)
T cd04962 263 HVEELLSI--ADLFLLPSEKE-SFGLAALEAMA--CGVPVVA 299 (371)
T ss_pred cHHHHHHh--cCEEEeCCCcC-CCccHHHHHHH--cCCCEEE
Confidence 46677766 89999888744 58889999998 5788886
No 459
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=46.80 E-value=1.2e+02 Score=25.98 Aligned_cols=85 Identities=27% Similarity=0.415 Sum_probs=49.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 010990 236 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 315 (496)
Q Consensus 236 d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v 315 (496)
..||+|+|.|++. ++|+.+...|.+. .+..+.....+-. ...+. ..+.
T Consensus 5 ~~~i~i~G~G~s~-~~A~~~~~~l~~~--------~~~~~~~~~~~~~----------~~~~~-----------~~~~-- 52 (131)
T PF01380_consen 5 AKRIYIYGSGSSY-GVAQYAALKLQKL--------GRIVVISYEAGEF----------FHGPL-----------ENLD-- 52 (131)
T ss_dssp SSEEEEEESTHHH-HHHHHHHHHHHHH--------HSSEEEEEEHHHH----------HTTGG-----------GGCS--
T ss_pred CCEEEEEEcchHH-HHHHHHHHHHHHh--------cCcceeccchHHH----------hhhhc-----------cccc--
Confidence 4699999999998 5999988877552 2344433322110 00001 1111
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--ccCCCceEEecCCCC
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 354 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~--~~~~rPIIFaLSNPt 354 (496)
+=|++|-.|..| -|+|+++.+. +...-|+|.-=+|+.
T Consensus 53 ~~d~vi~is~sg--~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 53 PDDLVIIISYSG--ETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp TTEEEEEEESSS--TTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred ccceeEeeeccc--cchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 247788888655 4777777763 455667765444544
No 460
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=46.76 E-value=24 Score=36.82 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+|+|+|||-+|+.+|..|.. .| .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 69999999999999988864 25 368889885
No 461
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=46.64 E-value=3.1e+02 Score=27.39 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=30.6
Q ss_pred CHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccCCcEEEe
Q 010990 331 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA 375 (496)
Q Consensus 331 t~evv~~M~~~~~rPIIFaLSNPt~~~E~~peda~~~t~G~ai~A 375 (496)
+++.++..++..+.|+++-++.... +.++++.-++ |-.++.
T Consensus 184 ~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l--G~~~v~ 224 (243)
T cd00377 184 DPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL--GVRRVS 224 (243)
T ss_pred CHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC--CCeEEE
Confidence 7888888888888999887655442 6889998887 544443
No 462
>PRK09897 hypothetical protein; Provisional
Probab=46.49 E-value=24 Score=39.48 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+|+|+|+|.+|+.+|..|+.. + ..-+|.++|+.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecC
Confidence 799999999999999999762 2 12479999984
No 463
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=46.37 E-value=37 Score=36.10 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=37.6
Q ss_pred CHHHHhcccCCcEEEEccCCCC-----CCCHHHHHHHHccCCCceEEecCCCC-CCCCCCH
Q 010990 307 NLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT-SQSECTA 361 (496)
Q Consensus 307 ~L~e~v~~vkptvLIG~S~~~g-----~Ft~evv~~M~~~~~rPIIFaLSNPt-~~~E~~p 361 (496)
-+.|.+++ .|+.|=+.-.|| +.|+++|+.|. .-.+|.=|+--+ -++|+|-
T Consensus 237 ~~a~~~~~--~DivITTAlIPGrpAP~Lvt~~mv~sMk---pGSViVDlAa~~GGNce~t~ 292 (356)
T COG3288 237 LVAEQAKE--VDIVITTALIPGRPAPKLVTAEMVASMK---PGSVIVDLAAETGGNCELTE 292 (356)
T ss_pred HHHHHhcC--CCEEEEecccCCCCCchhhHHHHHHhcC---CCcEEEEehhhcCCCccccc
Confidence 46677765 899997766554 69999999996 677898887665 4566664
No 464
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=46.25 E-value=22 Score=37.00 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=24.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~-----~G~-------~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ-----KGI-------KTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc-----CCC-------eEEEecCC
Confidence 68999999999999987754 465 57777764
No 465
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=46.04 E-value=23 Score=36.23 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.|+|+|||-+|+.+|-.|.+ .|. ++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~-----~G~-------~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR-----RGL-------SVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 48999999999999988865 253 58888875
No 466
>PRK06138 short chain dehydrogenase; Provisional
Probab=46.01 E-value=66 Score=30.59 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=22.7
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 233 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 233 ~l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.|++.+++|.|| |.-|..+|+.++ + .|. ++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~----~-~G~-------~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFA----R-EGA-------RVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHH----H-CCC-------eEEEecCC
Confidence 366779999998 344555555544 3 353 57877764
No 467
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=45.86 E-value=29 Score=30.98 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=50.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC-cCCCchhc---hhhccccCCCCCHHHHhcc
Q 010990 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR-KDSLQHFK---KPWAHEHEPVNNLLDAVKV 314 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r-~~~l~~~k---~~~a~~~~~~~~L~e~v~~ 314 (496)
|+|+|+|+.|.-+|..|.++ | .++.++++.. -.+.. .+.+.-.. ....+.........+ ..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSA--DA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGH--HH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchh--cc
Confidence 78999999999999888653 4 4688888865 11111 00110000 000000000111112 22
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCc-eEEecCCC
Q 010990 315 IKPTILIGSSGVGRTFTKEVIEAMASFNEKP-LILALSNP 353 (496)
Q Consensus 315 vkptvLIG~S~~~g~Ft~evv~~M~~~~~rP-IIFaLSNP 353 (496)
-++|++|=+.... =++++++.++.+...- .|+.+-|=
T Consensus 66 ~~~D~viv~vKa~--~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 66 GPYDLVIVAVKAY--QLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp STESEEEE-SSGG--GHHHHHHHHCTGEETTEEEEEESSS
T ss_pred CCCcEEEEEeccc--chHHHHHHHhhccCCCcEEEEEeCC
Confidence 3588887333222 2678888887655442 55556664
No 468
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=45.85 E-value=24 Score=37.62 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=25.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.++|+|+|.||+..|..+... | .++.++|+.
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~~ 33 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEKE 33 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 589999999999999888653 5 478999983
No 469
>PRK05993 short chain dehydrogenase; Provisional
Probab=45.83 E-value=42 Score=33.09 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=20.8
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
.+++|.|| |..|..+|+.+.+ .|. ++++++++
T Consensus 5 k~vlItGasggiG~~la~~l~~-----~G~-------~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS-----DGW-------RVFATCRK 37 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-----CCC-------EEEEEECC
Confidence 57999998 5555555555543 353 58887764
No 470
>PRK10262 thioredoxin reductase; Provisional
Probab=45.66 E-value=19 Score=36.53 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHH
Q 010990 235 AEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
+..+|+|+|+|.||+..|..+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHH
Confidence 56789999999999999988865
No 471
>PRK10015 oxidoreductase; Provisional
Probab=45.60 E-value=23 Score=38.01 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
-.|+|+|||.||+..|-.|.. .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 479999999999999988754 365 477787653
No 472
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=45.48 E-value=19 Score=41.51 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=26.9
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
-+..+|+|+|||.||+..|-.|.. .|+ ++.++++.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r-----~Gi-------~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK-----KGF-------DVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh-----cCC-------eEEEEecc
Confidence 456799999999999999988865 365 36666653
No 473
>PTZ00367 squalene epoxidase; Provisional
Probab=45.47 E-value=31 Score=38.87 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=29.6
Q ss_pred HHhCCCc---ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 228 KLIGGTL---AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 228 r~~g~~l---~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++..+|. .+-+|+|+|||.||+..|..|.+ .|. ++.++++.
T Consensus 22 ~~~~~~~~~~~~~dViIVGaGiaGlalA~aLar-----~G~-------~V~VlEr~ 65 (567)
T PTZ00367 22 RLRFKPARTNYDYDVIIVGGSIAGPVLAKALSK-----QGR-------KVLMLERD 65 (567)
T ss_pred HHccCccccccCccEEEECCCHHHHHHHHHHHh-----cCC-------EEEEEccc
Confidence 3445554 45589999999999999988764 354 56777765
No 474
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=45.39 E-value=33 Score=37.09 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=36.0
Q ss_pred HHcCCCceeecCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEc
Q 010990 200 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVD 278 (496)
Q Consensus 200 ~yr~~~~~FnDDiQGTa~V~LAgll~Alr~~g~~l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD 278 (496)
+|-.....+.|=..||+ .++++++++|.|| |.-|-.+|+.+. + .|. ++..+|
T Consensus 157 ~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASgGIG~aLA~~La----~-~G~-------~Vi~l~ 209 (406)
T PRK07424 157 AYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASGTLGQALLKELH----Q-QGA-------KVVALT 209 (406)
T ss_pred ceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCCHHHHHHHHHHH----H-CCC-------EEEEEe
Confidence 45567788999888888 2466789999997 444444555443 3 353 567776
Q ss_pred CC
Q 010990 279 SK 280 (496)
Q Consensus 279 ~~ 280 (496)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 54
No 475
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=45.36 E-value=26 Score=38.94 Aligned_cols=35 Identities=17% Similarity=0.039 Sum_probs=25.5
Q ss_pred CccCcccccccchhhHHHHHhCCcccCHHHHHHHH
Q 010990 391 VPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 425 (496)
Q Consensus 391 ~p~Q~NN~~iFPGiglG~l~~~a~~itd~m~~aAA 425 (496)
.||-.+|-..+|.+.=+..+...--++.+-+..+.
T Consensus 188 ~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 188 TPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred CCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 46788999999988888777766656666666553
No 476
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=45.36 E-value=29 Score=39.37 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
...||+|+|+|.||+..|..|... |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 578999999999999999888753 64 478888763
No 477
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=45.25 E-value=2e+02 Score=27.35 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=28.4
Q ss_pred CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 306 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 306 ~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
.++.+.++. .|++|..|... .|.-.++++|+ +..|+|.
T Consensus 255 ~~~~~~~~~--~d~~i~ps~~e-~~~~~~~Ea~~--~G~PvI~ 292 (353)
T cd03811 255 SNPYPYLKA--ADLFVLSSRYE-GFPNVLLEAMA--LGTPVVA 292 (353)
T ss_pred CCHHHHHHh--CCEEEeCcccC-CCCcHHHHHHH--hCCCEEE
Confidence 345666766 89999888764 47888999998 5777775
No 478
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=45.02 E-value=27 Score=37.31 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=26.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 4699999999999999888653 5 478899984
No 479
>PTZ00188 adrenodoxin reductase; Provisional
Probab=44.98 E-value=36 Score=38.09 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=27.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
...||+|+|||.||+-.|..|+.. .|. ++.++|+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~----~g~-------~VtlfEk~ 72 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH----ERV-------KVDIFEKL 72 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh----cCC-------eEEEEecC
Confidence 356999999999999999976542 243 47888876
No 480
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=44.64 E-value=27 Score=37.42 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=23.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 010990 239 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 283 (496)
Q Consensus 239 iv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi 283 (496)
|||+|+|.||+.-|-.... .|. ++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CCC-------EEEEEECCccC
Confidence 7999999999888776654 364 79999998865
No 481
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=44.60 E-value=32 Score=37.45 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=27.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
...+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 56799999999999999888754 364 47778765
No 482
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=44.58 E-value=83 Score=31.67 Aligned_cols=86 Identities=12% Similarity=0.249 Sum_probs=50.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 010990 238 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 316 (496)
Q Consensus 238 riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 316 (496)
||+|.|| |--|-.+++.|++ .| +++.+|+..-. +.-+-.....+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999888877753 13 36666654110 0001111134667788788
Q ss_pred CcEEEEccCCCCCC----------------CHHHHHHHHccCCCceEEecC
Q 010990 317 PTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILALS 351 (496)
Q Consensus 317 ptvLIG~S~~~g~F----------------t~evv~~M~~~~~rPIIFaLS 351 (496)
||++|=+.+..+.- +..+++++.++. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776654221 234555555544 46887544
No 483
>PRK12828 short chain dehydrogenase; Provisional
Probab=44.43 E-value=37 Score=31.82 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=24.0
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 233 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 233 ~l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++++.+++|.|| |..|..+++.+++ +|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 466789999997 5555555555543 354 48888874
No 484
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=44.10 E-value=32 Score=35.17 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=29.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 010990 235 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 283 (496)
Q Consensus 235 ~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi 283 (496)
...+|+|+|+|-+|+.+|-.|... |. +|.++|++..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 356899999999999999888653 53 78888876553
No 485
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=44.09 E-value=1.2e+02 Score=30.48 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=53.1
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 010990 237 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 315 (496)
Q Consensus 237 ~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v 315 (496)
.||.++|+ |..|-.+++.+... .++ +=..++|++. .+.... ..+ ......++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 48999999 99998888776431 233 3355677652 111101 111 1112367888886
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCceEEe
Q 010990 316 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 349 (496)
Q Consensus 316 kptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIFa 349 (496)
++|++|=+|.+. ...++++...++ ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888643 346666665544 5677755
No 486
>PRK06392 homoserine dehydrogenase; Provisional
Probab=44.09 E-value=90 Score=32.84 Aligned_cols=159 Identities=16% Similarity=0.227 Sum_probs=80.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHH-HhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc-hhhccc----cCCCC--CHH
Q 010990 238 RFLFLGAGEAGTGIAELIALEIS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHE----HEPVN--NLL 309 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~-~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k-~~~a~~----~~~~~--~L~ 309 (496)
||.++|.|..|-+++++|.+--. ++.|+. -+=+-+.|++|.++..+ .++..+ ..+.+. ..... ++.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~--Gldl~~l~~~~~~g~l~~~~~~~~~~~ 75 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNER--GLDIGKIISYKEKGRLEEIDYEKIKFD 75 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCc--CCChHHHHHHHhcCccccCCCCcCCHH
Confidence 79999999999999999876210 112321 12355679999888765 233211 111111 01112 566
Q ss_pred HHhcccCCcEEEEccCC--CCC-CCHHHHHHHHccCCCceEEecCCCCCCCCCCHH--HHhcccCCcEE-----EecCCC
Q 010990 310 DAVKVIKPTILIGSSGV--GRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAE--EAYTWSKGRAI-----FASGSP 379 (496)
Q Consensus 310 e~v~~vkptvLIG~S~~--~g~-Ft~evv~~M~~~~~rPIIFaLSNPt~~~E~~pe--da~~~t~G~ai-----~AsGsP 379 (496)
+.++ .++||+|=+++. .|. -..-+.+++. +...+|. +|=...++-..| ++-+ ..|+.+ ++.|-|
T Consensus 76 ~ll~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~--~G~hVVT--aNKgalA~~~~eL~~lA~-~~g~~~~~eatV~~g~P 149 (326)
T PRK06392 76 EIFE-IKPDVIVDVTPASKDGIREKNLYINAFE--HGIDVVT--ANKSGLANHWHDIMDSAS-KNRRIIRYEATVAGGVP 149 (326)
T ss_pred HHhc-CCCCEEEECCCCCCcCchHHHHHHHHHH--CCCEEEc--CCHHHHHhhHHHHHHHHH-HcCCeEEEeeeeeeccc
Confidence 6655 589999988742 111 1122334443 2344443 342222322222 1212 234443 356766
Q ss_pred CCCcccCCeeeCccCcccccccchhhHHH---HHhCC
Q 010990 380 FDPFEYNGKVFVPGQANNAYIFPGFGLGL---VISGA 413 (496)
Q Consensus 380 f~pv~~~G~~~~p~Q~NN~~iFPGiglG~---l~~~a 413 (496)
.=..- +. ---+|+..=+=||.-|. ++++.
T Consensus 150 ii~~~---~~--~~~g~~i~~i~GilnGT~nyIl~~m 181 (326)
T PRK06392 150 LFSLR---DY--STLPSRIKNFRGIVSSTINYVIRQE 181 (326)
T ss_pred hhhhh---hh--hcccCCEEEEEEEEeChHHHHHhhc
Confidence 43321 11 12235667777887776 45554
No 487
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=44.07 E-value=50 Score=35.18 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=42.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCCCCCHHH
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLD 310 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e 310 (496)
..|++.+|.|+|-|+-|-++|+.|... |+ ++++.|+.+ .. . ..+.. .-...++.|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s----~-----~~A~~~G~~v~sl~E 67 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS----F-----EVAKADGFEVMSVSE 67 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh----h-----HHHHHcCCEECCHHH
Confidence 357889999999999999999998764 76 466665532 11 1 11111 111237888
Q ss_pred HhcccCCcEEE
Q 010990 311 AVKVIKPTILI 321 (496)
Q Consensus 311 ~v~~vkptvLI 321 (496)
+++. +|+++
T Consensus 68 aak~--ADVV~ 76 (335)
T PRK13403 68 AVRT--AQVVQ 76 (335)
T ss_pred HHhc--CCEEE
Confidence 8886 78776
No 488
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.89 E-value=30 Score=34.75 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=26.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+||.|+|+|..|.++|..++.. |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988653 54 68888854
No 489
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=43.88 E-value=1.7e+02 Score=28.79 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=28.9
Q ss_pred CHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 307 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 307 ~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
.+.+.+.. .|++|-.|.....|.--++++|+ +..|+|.
T Consensus 256 ~~~~~l~~--ad~~i~ps~~~e~~~~~l~EA~a--~G~PvI~ 293 (355)
T cd03819 256 DMPAAYAL--ADIVVSASTEPEAFGRTAVEAQA--MGRPVIA 293 (355)
T ss_pred cHHHHHHh--CCEEEecCCCCCCCchHHHHHHh--cCCCEEE
Confidence 46666766 99999888434468889999998 5778885
No 490
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=43.87 E-value=28 Score=38.09 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=29.6
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 010990 233 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 281 (496)
Q Consensus 233 ~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~G 281 (496)
.+++++|+|+|+|..|+-||..|... .++++++-+.+
T Consensus 201 ~~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 201 PFKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 36789999999999999999988653 16788776654
No 491
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=43.76 E-value=24 Score=38.09 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=20.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
+|+|+|||+||+-.|-.+.+ .| .++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KG-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CCEEEEeCC
Confidence 58999999999988877744 35 468888876
No 492
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=43.49 E-value=55 Score=33.39 Aligned_cols=49 Identities=31% Similarity=0.375 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 010990 220 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 279 (496)
Q Consensus 220 LAgll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~ 279 (496)
.+..+.|+...+..-..++++|.|+|+.|..++.+... .|. ++++.+++
T Consensus 162 ~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~-----~G~------~~v~~~~~ 210 (361)
T cd08231 162 LATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKL-----AGA------RRVIVIDG 210 (361)
T ss_pred HHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------CeEEEEcC
Confidence 33345566555554478899999988777665544432 364 46777765
No 493
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=43.34 E-value=38 Score=28.81 Aligned_cols=90 Identities=11% Similarity=0.162 Sum_probs=49.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCC
Q 010990 238 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 317 (496)
Q Consensus 238 riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkp 317 (496)
||.|+|+|..|-.....+... ..+. +=..++|++. +......+.|-- +..+++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 899999999976665544332 0111 2234566531 111112222211 234789999998889
Q ss_pred cEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 318 TILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 318 tvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
|+++ +++.. ..-.++++...+... +|+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9888 55544 345566555554333 4443
No 494
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=43.25 E-value=2.1e+02 Score=24.58 Aligned_cols=83 Identities=25% Similarity=0.412 Sum_probs=47.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 010990 237 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 316 (496)
Q Consensus 237 ~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 316 (496)
.||.|+|.|... -+|+.+...|.+ .|. ++.+++.. +.+. .. +. -++ +
T Consensus 1 ~~I~i~G~G~S~-~~a~~~~~~l~~-~g~-------~~~~~~~~--------~~~~-------~~------~~-~~~--~ 47 (128)
T cd05014 1 GKVVVTGVGKSG-HIARKIAATLSS-TGT-------PAFFLHPT--------EALH-------GD------LG-MVT--P 47 (128)
T ss_pred CeEEEEeCcHhH-HHHHHHHHHhhc-CCC-------ceEEcccc--------hhhc-------cc------cC-cCC--C
Confidence 379999999776 688877776644 232 23322211 0000 00 00 012 3
Q ss_pred CcEEEEccCCCCCCCHHHHHHHH--ccCCCceEEecCCCC
Q 010990 317 PTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 354 (496)
Q Consensus 317 ptvLIG~S~~~g~Ft~evv~~M~--~~~~rPIIFaLSNPt 354 (496)
-|++|..|-.|. |+++++.+. +.+.-|||.=-+||.
T Consensus 48 ~d~vi~iS~sG~--t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 48 GDVVIAISNSGE--TDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 688999998775 888888875 334456665545554
No 495
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=43.21 E-value=1.3e+02 Score=30.34 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=51.6
Q ss_pred HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc
Q 010990 223 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH 302 (496)
Q Consensus 223 ll~Alr~~g~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~ 302 (496)
++.|++.......+.+++|+|.|...--+..++ ++.++. .++.+..
T Consensus 222 li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~-----~~~~~~-----~~v~~~g------------------------ 267 (372)
T cd04949 222 LIKAFAKVVKQVPDATLDIYGYGDEEEKLKELI-----EELGLE-----DYVFLKG------------------------ 267 (372)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHH-----HHcCCc-----ceEEEcC------------------------
Confidence 455555555556688899999887643222222 112321 2333221
Q ss_pred CCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010990 303 EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 348 (496)
Q Consensus 303 ~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~rPIIF 348 (496)
...++.+.++. .+++|=.|... .|.-.++++|+ +..|||-
T Consensus 268 -~~~~~~~~~~~--ad~~v~~S~~E-g~~~~~lEAma--~G~PvI~ 307 (372)
T cd04949 268 -YTRDLDEVYQK--AQLSLLTSQSE-GFGLSLMEALS--HGLPVIS 307 (372)
T ss_pred -CCCCHHHHHhh--hhEEEeccccc-ccChHHHHHHh--CCCCEEE
Confidence 01235666766 89999888753 58889999998 5677775
No 496
>PRK06841 short chain dehydrogenase; Provisional
Probab=43.21 E-value=40 Score=32.27 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=24.4
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 233 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 233 ~l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++++.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~-----~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAA-----KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467889999997 5555556666543 364 57777764
No 497
>PLN02240 UDP-glucose 4-epimerase
Probab=43.13 E-value=48 Score=33.59 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=57.9
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch------hchhhcc-ccCC
Q 010990 233 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------FKKPWAH-EHEP 304 (496)
Q Consensus 233 ~l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~GLi~~~r~~~l~~------~k~~~a~-~~~~ 304 (496)
.+...||+|.|| |--|-.+++.|++. | .+++.+|+..--.......+.. .+..+.. +...
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 456679999997 78888888877652 5 3588887542100000000000 0001111 1111
Q ss_pred CCCHHHHhcccCCcEEEEccCCCCC----------------CCHHHHHHHHccCCCceEEecC
Q 010990 305 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 351 (496)
Q Consensus 305 ~~~L~e~v~~vkptvLIG~S~~~g~----------------Ft~evv~~M~~~~~rPIIFaLS 351 (496)
..++.++++..++|++|=+.+.... -+..++++|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2356677776789999987764321 1235667776655567887533
No 498
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=43.08 E-value=72 Score=30.53 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=23.4
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 234 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 234 l~d~riv~~GA-G~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++..+++|.|| |..|..+++.|++ +|. ++++++++
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 55678999998 5556666666543 363 57777764
No 499
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.95 E-value=32 Score=36.81 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.8
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 010990 234 LAEHRFLFLGAGEAGTGIAELIAL 257 (496)
Q Consensus 234 l~d~riv~~GAG~Ag~GiA~ll~~ 257 (496)
+...+|+|+|+|.+|+++|+.|.+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~ 26 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRK 26 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH
Confidence 456799999999999999988864
No 500
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=42.81 E-value=31 Score=41.66 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=30.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 010990 232 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 280 (496)
Q Consensus 232 ~~l~d~riv~~GAG~Ag~GiA~ll~~~~~~~~G~~~eeA~~~i~~vD~~ 280 (496)
++-...||+|+|+|.||+..|.-|.. .|. ++.++|..
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~-----~Gh-------~Vtv~E~~ 415 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLR-----SGH-------NVTAIDGL 415 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEccc
Confidence 33567899999999999999999975 365 58888874
Done!