Your job contains 1 sequence.
>010991
MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT
YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV
ERTKILQAFKCSRDLNTIFLSKISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNA
FFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKV
LSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYMEYSTGQKKLGLGQKGK
PKDPSKRHYLFKRRFG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010991
(496 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2177901 - symbol:XPB1 "homolog of xeroderma pi... 2195 1.9e-227 1
TAIR|locus:2177891 - symbol:XPB2 "homolog of Xeroderma pi... 2161 7.4e-224 1
DICTYBASE|DDB_G0278729 - symbol:repB "transcription facto... 1433 1.0e-146 1
UNIPROTKB|G3V1S1 - symbol:ERCC3 "Excision repair cross-co... 1394 1.4e-142 1
UNIPROTKB|P19447 - symbol:ERCC3 "TFIIH basal transcriptio... 1394 1.4e-142 1
UNIPROTKB|Q5RA62 - symbol:ERCC3 "TFIIH basal transcriptio... 1394 1.4e-142 1
UNIPROTKB|Q60HG1 - symbol:ERCC3 "TFIIH basal transcriptio... 1394 1.4e-142 1
UNIPROTKB|Q1RMT1 - symbol:ERCC3 "TFIIH basal transcriptio... 1385 1.3e-141 1
UNIPROTKB|F1NZ23 - symbol:ERCC3 "TFIIH basal transcriptio... 1381 3.4e-141 1
UNIPROTKB|E2RN68 - symbol:ERCC3 "Uncharacterized protein"... 1381 3.4e-141 1
UNIPROTKB|F1RXZ5 - symbol:ERCC3 "Uncharacterized protein"... 1381 3.4e-141 1
UNIPROTKB|F1NDN0 - symbol:ERCC3 "TFIIH basal transcriptio... 1380 4.3e-141 1
MGI|MGI:95414 - symbol:Ercc3 "excision repair cross-compl... 1377 8.9e-141 1
RGD|1307139 - symbol:Ercc3 "excision repair cross-complem... 1374 1.9e-140 1
UNIPROTKB|Q5ZKK7 - symbol:ERCC3 "TFIIH basal transcriptio... 1372 3.0e-140 1
CGD|CAL0005155 - symbol:orf19.2857 species:5476 "Candida ... 1334 2.4e-138 2
POMBASE|SPAC17A5.06 - symbol:ptr8 "transcription factor T... 1352 4.0e-138 1
SGD|S000001405 - symbol:SSL2 "Component of RNA polymerase... 1347 1.3e-137 1
ZFIN|ZDB-GENE-030131-3043 - symbol:ercc3 "excision repair... 1345 2.2e-137 1
FB|FBgn0001179 - symbol:hay "haywire" species:7227 "Droso... 1327 1.8e-135 1
WB|WBGene00013441 - symbol:Y66D12A.15 species:6239 "Caeno... 1272 1.2e-129 1
ASPGD|ASPL0000009371 - symbol:AN8201 species:162425 "Emer... 1259 2.8e-128 1
GENEDB_PFALCIPARUM|PF10_0369 - symbol:PF10_0369 "helicase... 990 9.1e-100 1
UNIPROTKB|Q8IJ31 - symbol:PF10_0369 "DNA repair helicase ... 990 9.1e-100 1
UNIPROTKB|O53873 - symbol:ercc3 "PROBABLE DNA HELICASE ER... 458 2.2e-43 1
>TAIR|locus:2177901 [details] [associations]
symbol:XPB1 "homolog of xeroderma pigmentosum
complementation group B 1" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0009636 "response to toxic substance"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009411 "response to UV"
evidence=IEP] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009411
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
EMBL:AB006707 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
TIGRFAMs:TIGR00603 EMBL:U29168 EMBL:AY550923 EMBL:AY039547
EMBL:AY113008 IPI:IPI00536770 PIR:S71206 RefSeq:NP_568592.1
UniGene:At.6482 ProteinModelPortal:Q38861 SMR:Q38861 IntAct:Q38861
STRING:Q38861 PaxDb:Q38861 PRIDE:Q38861 EnsemblPlants:AT5G41370.1
GeneID:834139 KEGG:ath:AT5G41370 GeneFarm:4453 TAIR:At5g41370
InParanoid:Q38861 OMA:YAYTIVD PhylomeDB:Q38861
ProtClustDB:CLSN2689906 Genevestigator:Q38861 GermOnline:AT5G41370
Uniprot:Q38861
Length = 767
Score = 2195 (777.7 bits), Expect = 1.9e-227, P = 1.9e-227
Identities = 428/511 (83%), Positives = 453/511 (88%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 317 VSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTT 376
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGG WGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 497 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 556
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ERTKIL+AFK S+D+NT+FLSK ISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+G+
Sbjct: 617 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSS 676
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
LSYH +EQL+LLGKV++AGDD VGLEQL+ED D +AL KARR GSMS MSG++GMVYM
Sbjct: 677 LSYHSQEEQLSLLGKVMNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSVMSGSKGMVYM 736
Query: 465 EYSTXXXXXXXXXXXXPKDPSKRHYLFKRRF 495
EY++ PKDP+KRH LFK+R+
Sbjct: 737 EYNSGRHKSGQQFKK-PKDPTKRHNLFKKRY 766
>TAIR|locus:2177891 [details] [associations]
symbol:XPB2 "homolog of Xeroderma pigmentosum
complementation group B 2" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEP] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0006289
EMBL:AB006707 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
OMA:SRVTDPQ TIGRFAMs:TIGR00603 EMBL:AY550923 PIR:S71206
ProtClustDB:CLSN2689906 EMBL:AF308595 IPI:IPI00545479
RefSeq:NP_568591.1 UniGene:At.24438 ProteinModelPortal:Q9FUG4
SMR:Q9FUG4 STRING:Q9FUG4 PaxDb:Q9FUG4 PRIDE:Q9FUG4
EnsemblPlants:AT5G41360.1 GeneID:834138 KEGG:ath:AT5G41360
GeneFarm:4454 TAIR:At5g41360 InParanoid:Q9FUG4 PhylomeDB:Q9FUG4
Genevestigator:Q9FUG4 GermOnline:AT5G41360 Uniprot:Q9FUG4
Length = 766
Score = 2161 (765.8 bits), Expect = 7.4e-224, P = 7.4e-224
Identities = 423/511 (82%), Positives = 448/511 (87%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWA+QFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 317 VSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVTT 376
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNM+AFGG WGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 497 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 556
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ERTKIL+AFK S+ +NT+FLSK ISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTKILEAFKTSKTVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+G+
Sbjct: 617 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSS 676
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
L YH +EQL+LLGKVL+AGDD VGLEQL+ED D AL K RR GSMSAMSGA G VYM
Sbjct: 677 LGYHSQEEQLSLLGKVLNAGDDMVGLEQLEEDTDGKAL-KTRRSMGSMSAMSGANGRVYM 735
Query: 465 EYSTXXXXXXXXXXXXPKDPSKRHYLFKRRF 495
EY++ PKDP+KRH +FK+R+
Sbjct: 736 EYNSGRQKSGNQSKK-PKDPTKRHNIFKKRY 765
>DICTYBASE|DDB_G0278729 [details] [associations]
symbol:repB "transcription factor IIH subunit"
species:44689 "Dictyostelium discoideum" [GO:0009650 "UV
protection" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IEP] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;ISS] [GO:0005675 "holo
TFIIH complex" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000443 "SSL2-core TFIIH complex
portion of holo TFIIH complex" evidence=ISS] [GO:0000442 "SSL2-core
TFIIH complex portion of NEF3 complex" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0278729 GO:GO:0005524 GO:GO:0006355
GenomeReviews:CM000152_GR GO:GO:0003684 GO:GO:0006366
EMBL:AAFI02000024 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0006289 GO:GO:0009650 GO:GO:0000443
GO:GO:0000442 eggNOG:COG1061 KO:K10843 OMA:SRVTDPQ
TIGRFAMs:TIGR00603 HSSP:O29889 EMBL:U77065 RefSeq:XP_647819.1
ProteinModelPortal:O00835 STRING:O00835 EnsemblProtists:DDB0214830
GeneID:8621779 KEGG:ddi:DDB_G0278729 InParanoid:O00835
ProtClustDB:CLSZ2729383 Uniprot:O00835
Length = 800
Score = 1433 (509.5 bits), Expect = 1.0e-146, P = 1.0e-146
Identities = 299/512 (58%), Positives = 357/512 (69%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP+LN++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G
Sbjct: 293 VLEEYDFRNDTVNPNLNIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSG 352
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS L L T+AVSV+QW +QFKLWS I++ QI +FTSD+KE+ AGV +TT
Sbjct: 353 ITAACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEERQISKFTSDNKEKISNVAGVTITT 412
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MVAFGG WGL+L+DEVHVVPA MFRKV+++TK+HCKLGLTAT
Sbjct: 413 YTMVAFGGRRSAESLKIMNEITNREWGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLTAT 472
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+REDE+I DLNFLIGPKLYEANWLDL K GF+ANV C+EVWCPMT EF+ EYL ++
Sbjct: 473 LLREDEKIQDLNFLIGPKLYEANWLDLQKAGFLANVSCSEVWCPMTAEFYKEYLINDSQG 532
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ LY MNPNKFRACE+LIRFHEQ RGDKIIVF+DN++AL +YA L + IYG TS
Sbjct: 533 KKKLLYTMNPNKFRACEYLIRFHEQ-RGDKIIVFSDNVYALQKYAKGLGRYFIYGPTSGH 591
Query: 301 ERTKILQAFKCSRDLNTIFLSKI----------------SSHAGSRRQEAQRLGRILRAK 344
ER IL F+ + TIF+SK+ SSH GSRRQEAQRLGRILR K
Sbjct: 592 ERMSILSKFQHDPTVRTIFISKVGDTSIDIPEATVIIQVSSHYGSRRQEAQRLGRILRPK 651
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
K D + YNAFFYSLVS DTQEM+YSTKRQQFLIDQGYSFKVI+ LP D +
Sbjct: 652 PK-SDGL------YNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVISELPGIDQEVN 704
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA--LHKARRIAGSMSAMSGAQGMV 462
L Y +QL LL +VL G+D+ E L+ED DDI K++ A ++S +G
Sbjct: 705 LKYSSKQDQLDLLAQVLGEGEDSGKNEILEEDFDDITRGAKKSKSSAPTVSRTTGGSTRA 764
Query: 463 YMEYSTXXXXXXXXXXXXPKDPSKRHYLFKRR 494
+ P++ H LFK+R
Sbjct: 765 LSGGNDMNYMEYQAPAIYKSIPTQ-HALFKQR 795
>UNIPROTKB|G3V1S1 [details] [associations]
symbol:ERCC3 "Excision repair cross-complementing rodent
repair deficiency, complementation group 3 (Xeroderma pigmentosum
group B complementing), isoform CRA_b" species:9606 "Homo sapiens"
[GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0032564 "dATP
binding" evidence=IEA] [GO:0042277 "peptide binding" evidence=IEA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005525 GO:GO:0005524 GO:GO:0003677
GO:GO:0001666 EMBL:CH471103 GO:GO:0042277 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008353 EMBL:AC110926 GO:GO:0009650 GO:GO:0032564
GO:GO:0000441 TIGRFAMs:TIGR00603 UniGene:Hs.469872 HGNC:HGNC:3435
ChiTaRS:ERCC3 ProteinModelPortal:G3V1S1 SMR:G3V1S1
Ensembl:ENST00000493187 ArrayExpress:G3V1S1 Bgee:G3V1S1
Uniprot:G3V1S1
Length = 718
Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
Identities = 294/510 (57%), Positives = 361/510 (70%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 227 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 286
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 287 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 345
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 346 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 405
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 406 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 464
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 465 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 523
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 524 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 583
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 584 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 636
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 637 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRF-GTMSSMSGADDTVYM 695
Query: 465 EYSTXXXXXXXXXXXXPKDPSKR-HYLFKR 493
EY + K PSK H LFKR
Sbjct: 696 EYHSSRS----------KAPSKHVHPLFKR 715
>UNIPROTKB|P19447 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9606 "Homo sapiens" [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0032564
"dATP binding" evidence=IEA] [GO:0042277 "peptide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0047485 "protein
N-terminus binding" evidence=IPI] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA;IMP;TAS] [GO:0006265 "DNA
topological change" evidence=IMP] [GO:0005675 "holo TFIIH complex"
evidence=IDA;TAS] [GO:0006917 "induction of apoptosis"
evidence=IDA;IMP] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=TAS] [GO:0003677
"DNA binding" evidence=TAS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA;IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IDA;TAS] [GO:0004672 "protein
kinase activity" evidence=IDA] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0006289 "nucleotide-excision repair"
evidence=IMP;TAS] [GO:0008104 "protein localization" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP;TAS] [GO:0035315 "hair cell
differentiation" evidence=IMP] [GO:0000717 "nucleotide-excision
repair, DNA duplex unwinding" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=IMP] [GO:0009411 "response to UV" evidence=IMP]
[GO:0006979 "response to oxidative stress" evidence=IMP]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=IDA] [GO:0000718 "nucleotide-excision repair, DNA damage
removal" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=TAS]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0050434 "positive regulation of
viral transcription" evidence=TAS] Reactome:REACT_216
Reactome:REACT_71 InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
Reactome:REACT_116125 GO:GO:0009411 GO:GO:0019048 GO:GO:0008104
GO:GO:0016032 GO:GO:0006979 GO:GO:0006917 GO:GO:0003684
GO:GO:0001666 Reactome:REACT_1675 GO:GO:0045944 GO:GO:0016887
EMBL:CH471103 GO:GO:0042277 GO:GO:0004003 GO:GO:0006368
GO:GO:0008134 GO:GO:0006367 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000075 Reactome:REACT_1788 GO:GO:0008353
EMBL:AC110926 GO:GO:0009650 GO:GO:0005675 GO:GO:0006370
GO:GO:0000718 GO:GO:0050434 GO:GO:0006363 GO:GO:0006362
GO:GO:0006361 GO:GO:0006283 GO:GO:0032564 GO:GO:0035315
GO:GO:0033683 MIM:601675 Orphanet:453 Orphanet:670 Orphanet:220295
GO:GO:0000441 CTD:2071 eggNOG:COG1061 HOGENOM:HOG000160172
HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
EMBL:M31899 EMBL:AY163769 EMBL:BC008820 IPI:IPI00747053 PIR:A35661
RefSeq:NP_000113.1 UniGene:Hs.469872 ProteinModelPortal:P19447
SMR:P19447 DIP:DIP-83N IntAct:P19447 STRING:P19447
PhosphoSite:P19447 DMDM:119541 PaxDb:P19447 PRIDE:P19447 DNASU:2071
Ensembl:ENST00000285398 GeneID:2071 KEGG:hsa:2071 UCSC:uc002toe.1
GeneCards:GC02M128014 HGNC:HGNC:3435 HPA:CAB037153 MIM:133510
MIM:610651 neXtProt:NX_P19447 Orphanet:276252 PharmGKB:PA27849
InParanoid:P19447 PhylomeDB:P19447 ChiTaRS:ERCC3 GenomeRNAi:2071
NextBio:8425 ArrayExpress:P19447 Bgee:P19447 CleanEx:HS_ERCC3
Genevestigator:P19447 GermOnline:ENSG00000163161 Uniprot:P19447
Length = 782
Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
Identities = 294/510 (57%), Positives = 361/510 (70%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRF-GTMSSMSGADDTVYM 759
Query: 465 EYSTXXXXXXXXXXXXPKDPSKR-HYLFKR 493
EY + K PSK H LFKR
Sbjct: 760 EYHSSRS----------KAPSKHVHPLFKR 779
>UNIPROTKB|Q5RA62 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9601 "Pongo abelii" [GO:0000075 "cell
cycle checkpoint" evidence=ISS] [GO:0000717 "nucleotide-excision
repair, DNA duplex unwinding" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006468 "protein phosphorylation" evidence=ISS] [GO:0006917
"induction of apoptosis" evidence=ISS] [GO:0006979 "response to
oxidative stress" evidence=ISS] [GO:0008022 "protein C-terminus
binding" evidence=ISS] [GO:0008104 "protein localization"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=ISS]
[GO:0035315 "hair cell differentiation" evidence=ISS] [GO:0043138
"3'-5' DNA helicase activity" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=ISS] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0016887 GO:GO:0006366
GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0005675
GO:GO:0006283 GO:GO:0035315 GO:GO:0033683 CTD:2071
HOVERGEN:HBG051499 KO:K10843 GO:GO:0043138 GO:GO:0006265
GO:GO:0000717 TIGRFAMs:TIGR00603 HSSP:O29889 EMBL:CR859159
RefSeq:NP_001125797.1 UniGene:Pab.19064 ProteinModelPortal:Q5RA62
GeneID:100172725 KEGG:pon:100172725 Uniprot:Q5RA62
Length = 782
Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
Identities = 294/510 (57%), Positives = 361/510 (70%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRF-GTMSSMSGADDTVYM 759
Query: 465 EYSTXXXXXXXXXXXXPKDPSKR-HYLFKR 493
EY + K PSK H LFKR
Sbjct: 760 EYHSSRS----------KAPSKHVHPLFKR 779
>UNIPROTKB|Q60HG1 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9541 "Macaca fascicularis"
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0006265 "DNA topological
change" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006468 "protein phosphorylation"
evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
[GO:0006979 "response to oxidative stress" evidence=ISS]
[GO:0008022 "protein C-terminus binding" evidence=ISS] [GO:0008104
"protein localization" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=ISS] [GO:0035315 "hair cell differentiation" evidence=ISS]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=ISS] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0016887 GO:GO:0006366
GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0005675
GO:GO:0006283 GO:GO:0035315 GO:GO:0033683 HOVERGEN:HBG051499
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
EMBL:AB125166 ProteinModelPortal:Q60HG1 Uniprot:Q60HG1
Length = 782
Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
Identities = 294/510 (57%), Positives = 361/510 (70%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRF-GTMSSMSGADDTVYM 759
Query: 465 EYSTXXXXXXXXXXXXPKDPSKR-HYLFKR 493
EY + K PSK H LFKR
Sbjct: 760 EYHSSRS----------KAPSKHVHPLFKR 779
>UNIPROTKB|Q1RMT1 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9913 "Bos taurus" [GO:0006468
"protein phosphorylation" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=ISS] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0004672
"protein kinase activity" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISS] [GO:0035315 "hair cell differentiation" evidence=ISS]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0009411 "response to UV" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0006979 "response to oxidative stress"
evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0047485 "protein
N-terminus binding" evidence=ISS] [GO:0009650 "UV protection"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0016887 GO:GO:0004672 GO:GO:0006366
GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
EMBL:BC114729 IPI:IPI00704863 RefSeq:NP_001039453.1
UniGene:Bt.19954 ProteinModelPortal:Q1RMT1 STRING:Q1RMT1
PRIDE:Q1RMT1 Ensembl:ENSBTAT00000027687 GeneID:507984
KEGG:bta:507984 CTD:2071 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
HOVERGEN:HBG051499 InParanoid:Q1RMT1 KO:K10843 OMA:SRVTDPQ
OrthoDB:EOG4KD6KG NextBio:20868296 GO:GO:0043138 GO:GO:0006265
GO:GO:0000717 TIGRFAMs:TIGR00603 Uniprot:Q1RMT1
Length = 782
Score = 1385 (492.6 bits), Expect = 1.3e-141, P = 1.3e-141
Identities = 284/482 (58%), Positives = 351/482 (72%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSSQVSRRF-GTMSSMSGADDTVYM 759
Query: 465 EY 466
EY
Sbjct: 760 EY 761
>UNIPROTKB|F1NZ23 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0006979 "response to oxidative stress" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008104
"protein localization" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] [GO:0009650 "UV protection"
evidence=IEA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IEA] [GO:0035315 "hair cell differentiation"
evidence=IEA] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
GO:GO:0009650 GO:GO:0006283 GO:GO:0033683
GeneTree:ENSGT00390000002204 OMA:SRVTDPQ GO:GO:0043138
GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 IPI:IPI00585393
EMBL:AADN02016819 EMBL:AADN02016820 Ensembl:ENSGALT00000018775
ArrayExpress:F1NZ23 Uniprot:F1NZ23
Length = 787
Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
Identities = 284/501 (56%), Positives = 354/501 (70%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 288 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 347
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ + + ++T
Sbjct: 348 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDK-PIDCSIAIST 406
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 407 YSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 466
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 467 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 525
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG T+
Sbjct: 526 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQG 584
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 585 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 644
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 645 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 697
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
LS+ +EQ LL KVL A D E + + ++ +RR G+MS+MSGA VYM
Sbjct: 698 LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSVQMSRR-TGTMSSMSGADDAVYM 756
Query: 465 EYSTXXXXXXXXXXXXPKDPS 485
EY + P S
Sbjct: 757 EYHSSRSKASSNKHIHPLSAS 777
>UNIPROTKB|E2RN68 [details] [associations]
symbol:ERCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043138 "3'-5'
DNA helicase activity" evidence=IEA] [GO:0035315 "hair cell
differentiation" evidence=IEA] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IEA] [GO:0009650 "UV protection"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
[GO:0000075 "cell cycle checkpoint" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000439 "core TFIIH complex" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
GO:GO:0009650 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
GeneTree:ENSGT00390000002204 OMA:SRVTDPQ GO:GO:0043138
GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 EMBL:AAEX03011839
Ensembl:ENSCAFT00000007273 Uniprot:E2RN68
Length = 779
Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
Identities = 283/482 (58%), Positives = 351/482 (72%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 288 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 347
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 348 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 406
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 407 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 466
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 467 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 525
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 526 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 584
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 585 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 644
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 645 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMED-EE 697
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 698 LAFSTREEQQQLLQKVLAATDLDAEEEVVAGEFGSKSSQVSRRF-GTMSSMSGADDTVYM 756
Query: 465 EY 466
EY
Sbjct: 757 EY 758
>UNIPROTKB|F1RXZ5 [details] [associations]
symbol:ERCC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IEA] [GO:0035315 "hair cell
differentiation" evidence=IEA] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IEA] [GO:0009650 "UV protection"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
[GO:0000075 "cell cycle checkpoint" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000439 "core TFIIH complex" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
GO:GO:0009650 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
GeneTree:ENSGT00390000002204 KO:K10843 OMA:SRVTDPQ GO:GO:0043138
GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 EMBL:FP102347
EMBL:FP340363 RefSeq:XP_003133336.2 Ensembl:ENSSSCT00000017121
GeneID:100517918 KEGG:ssc:100517918 Uniprot:F1RXZ5
Length = 782
Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
Identities = 283/482 (58%), Positives = 351/482 (72%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 700
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQVSRRF-GTMSSMSGADDTVYM 759
Query: 465 EY 466
EY
Sbjct: 760 EY 761
>UNIPROTKB|F1NDN0 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 GeneTree:ENSGT00390000002204
TIGRFAMs:TIGR00603 EMBL:AADN02016819 EMBL:AADN02016820
IPI:IPI00819385 Ensembl:ENSGALT00000038117 ArrayExpress:F1NDN0
Uniprot:F1NDN0
Length = 782
Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
Identities = 282/482 (58%), Positives = 351/482 (72%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 290 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 349
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ + + ++T
Sbjct: 350 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDK-PIDCSIAIST 408
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 409 YSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 468
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 469 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 527
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG T+
Sbjct: 528 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQG 586
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 587 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 646
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 647 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 699
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
LS+ +EQ LL KVL A D E + + ++ +RR G+MS+MSGA VYM
Sbjct: 700 LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSVQMSRR-TGTMSSMSGADDAVYM 758
Query: 465 EY 466
EY
Sbjct: 759 EY 760
>MGI|MGI:95414 [details] [associations]
symbol:Ercc3 "excision repair cross-complementing rodent
repair deficiency, complementation group 3" species:10090 "Mus
musculus" [GO:0000075 "cell cycle checkpoint" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000441 "SSL2-core TFIIH complex"
evidence=ISO] [GO:0000717 "nucleotide-excision repair, DNA duplex
unwinding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=ISO] [GO:0005525 "GTP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006265 "DNA topological change" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0006917 "induction of apoptosis" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=ISO] [GO:0008022 "protein
C-terminus binding" evidence=ISO] [GO:0008104 "protein
localization" evidence=ISO] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=ISO] [GO:0009411
"response to UV" evidence=ISO] [GO:0009650 "UV protection"
evidence=IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0032564 "dATP
binding" evidence=ISO] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=ISO] [GO:0035315 "hair cell differentiation"
evidence=ISO] [GO:0042277 "peptide binding" evidence=ISO]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95414 GO:GO:0005525
GO:GO:0005524 GO:GO:0008104 GO:GO:0006979 GO:GO:0006917
GO:GO:0003677 GO:GO:0001666 GO:GO:0045944 GO:GO:0006366
GO:GO:0042277 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000075 GO:GO:0008353 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 GO:GO:0032564 GO:GO:0035315
GO:GO:0033683 GO:GO:0000441 CTD:2071 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
EMBL:S71186 EMBL:BC016595 EMBL:BC026575 IPI:IPI00113070 PIR:A48994
RefSeq:NP_598419.1 UniGene:Mm.282335 ProteinModelPortal:P49135
SMR:P49135 STRING:P49135 PhosphoSite:P49135 PaxDb:P49135
PRIDE:P49135 DNASU:13872 Ensembl:ENSMUST00000025241 GeneID:13872
KEGG:mmu:13872 UCSC:uc008eje.1 InParanoid:P49135 NextBio:284792
Bgee:P49135 Genevestigator:P49135 GermOnline:ENSMUSG00000024382
Uniprot:P49135
Length = 783
Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
Identities = 284/483 (58%), Positives = 351/483 (72%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 292 LLAEYDFRNDTLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 351
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 352 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 410
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 411 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTAT 470
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 471 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 529
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 530 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 588
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 589 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 648
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 649 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 701
Query: 405 LSYHRLDEQLALLGKVLSAGD-DAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVY 463
L++ +EQ LL KVL+A D DA E++ +A R G+MS++SGA VY
Sbjct: 702 LAFSTKEEQQQLLQKVLAATDLDAE--EEVVAGEFGSRSGQASRRCGTMSSLSGADDTVY 759
Query: 464 MEY 466
MEY
Sbjct: 760 MEY 762
>RGD|1307139 [details] [associations]
symbol:Ercc3 "excision repair cross-complementing rodent repair
deficiency, complementation group 3" species:10116 "Rattus
norvegicus" [GO:0000075 "cell cycle checkpoint" evidence=IEA;ISO]
[GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0000441
"SSL2-core TFIIH complex" evidence=IDA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding"
evidence=IEA;ISO] [GO:0001666 "response to hypoxia" evidence=IEP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IDA] [GO:0004672 "protein kinase
activity" evidence=ISO;ISS] [GO:0005524 "ATP binding" evidence=IDA]
[GO:0005525 "GTP binding" evidence=IDA] [GO:0005675 "holo TFIIH
complex" evidence=ISO;ISS] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0006917 "induction of apoptosis"
evidence=IEA;ISO] [GO:0006979 "response to oxidative stress"
evidence=IEA;ISO] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO;ISS] [GO:0008104 "protein localization"
evidence=IEA;ISO] [GO:0008134 "transcription factor binding"
evidence=IEA;ISO] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISO;ISS;IDA] [GO:0009411 "response
to UV" evidence=ISO] [GO:0009650 "UV protection" evidence=IEA;ISO]
[GO:0016887 "ATPase activity" evidence=ISO;IDA] [GO:0032564 "dATP
binding" evidence=IDA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IEA;ISO] [GO:0035315 "hair cell differentiation"
evidence=IEA;ISO] [GO:0042277 "peptide binding" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IEA;ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0047485 "protein
N-terminus binding" evidence=IEA;ISO] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 RGD:1307139
GO:GO:0005525 GO:GO:0005524 GO:GO:0008104 GO:GO:0006979
GO:GO:0006917 GO:GO:0003677 GO:GO:0001666 GO:GO:0045944
GO:GO:0006366 GO:GO:0042277 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000075 GO:GO:0008353
GO:GO:0009650 GO:GO:0005675 GO:GO:0006283 GO:GO:0032564
GO:GO:0035315 GO:GO:0033683 GO:GO:0000441 CTD:2071 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
HSSP:O29889 EMBL:BC098856 IPI:IPI00363457 RefSeq:NP_001026814.1
UniGene:Rn.44012 ProteinModelPortal:Q4G005 STRING:Q4G005
PhosphoSite:Q4G005 PRIDE:Q4G005 Ensembl:ENSRNOT00000018422
GeneID:291703 KEGG:rno:291703 UCSC:RGD:1307139 InParanoid:Q4G005
NextBio:633050 Genevestigator:Q4G005 Uniprot:Q4G005
Length = 782
Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
Identities = 281/482 (58%), Positives = 351/482 (72%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND++NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 700
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
L++ +EQ LL KVL+A D E + + + +RR G+MS++SGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSGQASRRF-GTMSSLSGADDTVYM 759
Query: 465 EY 466
EY
Sbjct: 760 EY 761
>UNIPROTKB|Q5ZKK7 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004672 "protein kinase activity" evidence=ISS] [GO:0005675
"holo TFIIH complex" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006468 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0005675 Reactome:REACT_115612 CTD:2071 eggNOG:COG1061
HOGENOM:HOG000160172 HOVERGEN:HBG051499 KO:K10843 OrthoDB:EOG4KD6KG
TIGRFAMs:TIGR00603 EMBL:AJ720077 IPI:IPI00585393
RefSeq:NP_001006523.1 UniGene:Gga.4898 HSSP:O29889
ProteinModelPortal:Q5ZKK7 STRING:Q5ZKK7 GeneID:424226
KEGG:gga:424226 InParanoid:Q5ZKK7 NextBio:20826586 Uniprot:Q5ZKK7
Length = 788
Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
Identities = 281/482 (58%), Positives = 350/482 (72%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 288 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 347
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ + + ++T
Sbjct: 348 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDK-PIDCSIAIST 406
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKL LTAT
Sbjct: 407 YSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAKMFRRVLTIVQAHCKLELTAT 466
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 467 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 525
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG T+
Sbjct: 526 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQG 584
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 585 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 644
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 645 ---KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 697
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
LS+ +EQ LL KVL A D E + + ++ +RR G+MS+MSGA VYM
Sbjct: 698 LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSVQMSRR-TGTMSSMSGADDAVYM 756
Query: 465 EY 466
EY
Sbjct: 757 EY 758
>CGD|CAL0005155 [details] [associations]
symbol:orf19.2857 species:5476 "Candida albicans" [GO:0005675
"holo TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0010525 "regulation of transposition,
RNA-mediated" evidence=IEA] [GO:0070816 "phosphorylation of RNA
polymerase II C-terminal domain" evidence=IEA] [GO:0001111
"promoter clearance from RNA polymerase II promoter" evidence=IEA]
[GO:0034644 "cellular response to UV" evidence=IEA] [GO:0016973
"poly(A)+ mRNA export from nucleus" evidence=IEA] [GO:0000019
"regulation of mitotic recombination" evidence=IEA] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=IEA]
[GO:0001113 "transcriptional open complex formation at RNA
polymerase II promoter" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005155
GO:GO:0005524 GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000080 EMBL:AACQ01000079
GO:GO:0006289 eggNOG:COG1061 KO:K10843 TIGRFAMs:TIGR00603
RefSeq:XP_715788.1 RefSeq:XP_715839.1 ProteinModelPortal:Q5A1Y8
STRING:Q5A1Y8 GeneID:3642537 GeneID:3642603 KEGG:cal:CaO19.10376
KEGG:cal:CaO19.2857 Uniprot:Q5A1Y8
Length = 843
Score = 1334 (474.7 bits), Expect = 2.4e-138, Sum P(2) = 2.4e-138
Identities = 272/464 (58%), Positives = 337/464 (72%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR+D NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 330 VLEEYDFRHDARNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 389
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTS++KE F +G+VV+T
Sbjct: 390 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASESGLVVST 449
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA WG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 450 YSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPAQMFRRVVTTIAAHAKLGLTAT 509
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL+ EN++
Sbjct: 510 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTAEFYQEYLR-ENAR 568
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE+ RGDKIIVF+DN++AL EYA++L KP IYG+T
Sbjct: 569 KRMLLYIMNPTKFQACQFLIHYHEK-RGDKIIVFSDNVYALQEYALRLGKPFIYGSTPQQ 627
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER KILQ F+ + +NTIFLSK ISSH GSRRQEAQRLGRILRAK
Sbjct: 628 ERMKILQNFQHNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 687
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ + E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 688 RRND-------EGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 740
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRI 448
L+Y E+ LL +VL +DA GLE + +DAD + K +R+
Sbjct: 741 LAYSSARERRELLQQVLLKNEDAAGLE-IGDDADTNFISKEKRM 783
Score = 332 (121.9 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 80/161 (49%), Positives = 104/161 (64%)
Query: 320 LSKISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 379
L +ISSH GSRRQEAQRLGRILRAK + + E +NAFFYSLVS DTQEM+YSTKR
Sbjct: 663 LIQISSHYGSRRQEAQRLGRILRAKRRND-------EGFNAFFYSLVSKDTQEMYYSTKR 715
Query: 380 QQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADD 439
Q FL+DQGY+FKVIT L + DL+Y E+ LL +VL +DA GLE + +DAD
Sbjct: 716 QAFLVDQGYAFKVITHLSGMEQLPDLAYSSARERRELLQQVLLKNEDAAGLE-IGDDADT 774
Query: 440 IALHKARRI--------------AGSMSAMSGAQGMVYMEY 466
+ K +R+ +GS++ ++G + M Y+EY
Sbjct: 775 NFISKEKRMRLEQERNGGGATYSSGSLAGLAGGEDMAYIEY 815
Score = 41 (19.5 bits), Expect = 2.4e-138, Sum P(2) = 2.4e-138
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNG 41
L+E ++ +DN +L +EL P P Y ++SK FG G
Sbjct: 71 LDETNY-SDN---EL-IELTPDV-PADYIPDAVSKNFGKG 104
>POMBASE|SPAC17A5.06 [details] [associations]
symbol:ptr8 "transcription factor TFIIH complex ERCC-3
subunit" species:4896 "Schizosaccharomyces pombe" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=ISO]
[GO:0000439 "core TFIIH complex" evidence=ISO] [GO:0000991 "core
RNA polymerase II binding transcription factor activity"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IMP] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IMP] [GO:0034644 "cellular response to UV"
evidence=IMP] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17A5.06 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0004003
GO:GO:0034644 GO:GO:0006367 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000991 GO:GO:0005675 GO:GO:0006283
GO:GO:0016973 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
OMA:SRVTDPQ TIGRFAMs:TIGR00603 EMBL:AB027988 PIR:T37821
RefSeq:NP_593474.1 ProteinModelPortal:O13768 IntAct:O13768
STRING:O13768 EnsemblFungi:SPAC17A5.06.1 GeneID:2542174
KEGG:spo:SPAC17A5.06 OrthoDB:EOG4QJVWB NextBio:20803245
GO:GO:0000439 GO:GO:0000112 Uniprot:O13768
Length = 804
Score = 1352 (481.0 bits), Expect = 4.0e-138, P = 4.0e-138
Identities = 287/515 (55%), Positives = 357/515 (69%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRNDN+NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 299 LLEEYDFRNDNINPDLPIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 358
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF WS I+ D I FT+D KERF AGVVV+T
Sbjct: 359 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWSNIKPDHIAVFTADHKERFHSEAGVVVST 418
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA WG +L+DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 419 YSMVANTRNRSYDSQKMMDFLTGREWGFILLDEVHVVPAAMFRRVVTTIAAHTKLGLTAT 478
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPK+YEANW+DL + G IA VQCAEVWC MT EF++EYL+ ENS+
Sbjct: 479 LVREDDKIDDLNFLIGPKMYEANWMDLAQKGHIAKVQCAEVWCAMTTEFYNEYLR-ENSR 537
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE+ RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 538 KRMLLYIMNPKKFQACQFLIDYHEK-RGDKIIVFSDNVYALRAYAIKLGKYFIYGGTPQQ 596
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +IL+ F+ + +NTIFLSK ISSH GSRRQEAQRLGRILRAK
Sbjct: 597 ERMRILENFQYNELVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 656
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ + E +NAFFYSLVS DTQEM+YS+KRQ FLIDQGY+FKVIT+L ++ +
Sbjct: 657 RRND-------EGFNAFFYSLVSKDTQEMYYSSKRQAFLIDQGYAFKVITNLKGMENLPN 709
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDAD------DIALHKARRIAGSMSAMSGA 458
L+Y E+L LL +VL ++A L+ ED A KA+R +GS+S ++GA
Sbjct: 710 LAYASKAERLELLQEVLLQNEEAADLDD-GEDTSFGSRSLSRAPAKAKRSSGSLSTLAGA 768
Query: 459 QGMVYMEYSTXXXXXXXXXXXXPKDPSKRHYLFKR 493
M Y+EY+ KD + H LF++
Sbjct: 769 DNMAYVEYNKSANKQLK------KDSKEHHALFRK 797
>SGD|S000001405 [details] [associations]
symbol:SSL2 "Component of RNA polymerase transcription factor
TFIIH holoenzyme" species:4932 "Saccharomyces cerevisiae"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0010525
"regulation of transposition, RNA-mediated" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA;IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000019
"regulation of mitotic recombination" evidence=IMP] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=IDA]
[GO:0005675 "holo TFIIH complex" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000990 "core
RNA polymerase binding transcription factor activity" evidence=IC]
[GO:0070816 "phosphorylation of RNA polymerase II C-terminal
domain" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0001113 "transcriptional
open complex formation at RNA polymerase II promoter" evidence=IMP]
[GO:0001111 "promoter clearance from RNA polymerase II promoter"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA;IDA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=IDA] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 SGD:S000001405 GO:GO:0005524
GO:GO:0003677 EMBL:BK006942 GO:GO:0004003 EMBL:Z38059
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0070816
GO:GO:0005675 GO:GO:0016973 GO:GO:0033683 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172 KO:K10843
OMA:SRVTDPQ TIGRFAMs:TIGR00603 OrthoDB:EOG4QJVWB GO:GO:0000439
GO:GO:0000112 GO:GO:0010525 GO:GO:0001113 GO:GO:0000019 EMBL:M94176
EMBL:L01414 EMBL:AY692883 PIR:S31272 RefSeq:NP_012123.1
ProteinModelPortal:Q00578 SMR:Q00578 DIP:DIP-731N IntAct:Q00578
MINT:MINT-573804 STRING:Q00578 PaxDb:Q00578 PeptideAtlas:Q00578
EnsemblFungi:YIL143C GeneID:854663 KEGG:sce:YIL143C CYGD:YIL143c
NextBio:977238 Genevestigator:Q00578 GermOnline:YIL143C
GO:GO:0001111 Uniprot:Q00578
Length = 843
Score = 1347 (479.2 bits), Expect = 1.3e-137, P = 1.3e-137
Identities = 282/494 (57%), Positives = 354/494 (71%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 397 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 456
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA WG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 457 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL+ E ++
Sbjct: 517 LVREDDKIGDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYLR-ETAR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE+ RGDKIIVF+DN++AL EYA+K+ KP IYG+T
Sbjct: 576 KRMLLYIMNPTKFQACQFLIQYHER-RGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQ 634
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER ILQ F+ + +NTIFLSK ISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 694
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ + E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 695 RRND-------EGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENIPN 747
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIAL-----HK-----ARRIAGSMSA 454
L+Y E+ LL +VL ++A G+E + +DAD+ HK A R GS+S
Sbjct: 748 LAYASPRERRELLQEVLLKNEEAAGIE-VGDDADNSVGRGSNGHKRFKSKAVRGEGSLSG 806
Query: 455 MSGAQGMVYMEYST 468
++G + M YMEYST
Sbjct: 807 LAGGEDMAYMEYST 820
>ZFIN|ZDB-GENE-030131-3043 [details] [associations]
symbol:ercc3 "excision repair cross-complementing
rodent repair deficiency, complementation group 3" species:7955
"Danio rerio" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005506 "iron ion
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016705 "oxidoreductase activity, acting on
paired donors, with incorporation or reduction of molecular oxygen"
evidence=IEA] [GO:0020037 "heme binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0043138 "3'-5' DNA helicase
activity" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001128 InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR017972
Pfam:PF00067 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS00086 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-3043 GO:GO:0005524 GO:GO:0005506 GO:GO:0009055
GO:GO:0003677 GO:GO:0020037 Gene3D:1.10.630.10 SUPFAM:SSF48264
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0016705 GeneTree:ENSGT00390000002204
TIGRFAMs:TIGR00603 EMBL:BX927387 IPI:IPI00994241
Ensembl:ENSDART00000124565 ArrayExpress:E7FFE5 Bgee:E7FFE5
Uniprot:E7FFE5
Length = 843
Score = 1345 (478.5 bits), Expect = 2.2e-137, P = 2.2e-137
Identities = 273/444 (61%), Positives = 330/444 (74%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+NM+LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 290 LLAEYDFRNDTVNPDINMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 349
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L ++VSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 350 VTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 408
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 409 YSMLGHTTKRSWEAERVMEWMKSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 468
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 469 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 527
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLIRFHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 528 KRILLYTMNPNKFRACQFLIRFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 586
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 587 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 646
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNA+FYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 647 ---KGMVA---EEYNAYFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 699
Query: 405 LSYHRLDEQLALLGKVLSAGD-DA 427
L + DEQ LL KVL+A D DA
Sbjct: 700 LMFSTRDEQQQLLQKVLAASDLDA 723
>FB|FBgn0001179 [details] [associations]
symbol:hay "haywire" species:7227 "Drosophila melanogaster"
[GO:0008344 "adult locomotory behavior" evidence=IMP] [GO:0004386
"helicase activity" evidence=ISS] [GO:0009411 "response to UV"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0001113 "transcriptional open complex formation
at RNA polymerase II promoter" evidence=ISS] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS;IDA] [GO:0001111
"promoter clearance from RNA polymerase II promoter" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC;NAS;IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009411 EMBL:AE014296 GO:GO:0003677 GO:GO:0008344
GO:GO:0004003 GO:GO:0004386 GO:GO:0006367 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0005675
GO:GO:0000381 eggNOG:COG1061 GeneTree:ENSGT00390000002204 KO:K10843
TIGRFAMs:TIGR00603 EMBL:S50517 EMBL:X68309 EMBL:L02965
EMBL:AY051975 EMBL:BT025199 PIR:A44223 RefSeq:NP_001137931.1
RefSeq:NP_524020.2 UniGene:Dm.5750 ProteinModelPortal:Q02870
SMR:Q02870 IntAct:Q02870 STRING:Q02870 PaxDb:Q02870 PRIDE:Q02870
EnsemblMetazoa:FBtr0076253 EnsemblMetazoa:FBtr0114599 GeneID:39202
KEGG:dme:Dmel_CG8019 UCSC:CG8019-RA CTD:39202 FlyBase:FBgn0001179
InParanoid:Q02870 OMA:SKINVIC OrthoDB:EOG4KKWHX PhylomeDB:Q02870
GenomeRNAi:39202 NextBio:812457 Bgee:Q02870 GermOnline:CG8019
Uniprot:Q02870
Length = 798
Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
Identities = 274/484 (56%), Positives = 340/484 (70%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 307 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 366
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 367 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 425
Query: 121 YNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ WG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 426 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 485
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + SK
Sbjct: 486 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSK 545
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K LYVMNP+KFR+C+FLI++HEQ RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 546 K-MLLYVMNPSKFRSCQFLIKYHEQ-RGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 603
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGRILRAK
Sbjct: 604 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 663
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ +A EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ +D
Sbjct: 664 ---KGAIA---EEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSD 717
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDAD--DIALHKARRIAGSMSAMSGAQGMV 462
L Y +EQ LL VLSA D E+L + A R G +S+MSG +
Sbjct: 718 LMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPSGSGGAVRRVGGLSSMSGGDDAI 777
Query: 463 YMEY 466
Y E+
Sbjct: 778 YYEH 781
>WB|WBGene00013441 [details] [associations]
symbol:Y66D12A.15 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172 KO:K10843
TIGRFAMs:TIGR00603 OMA:SKINVIC EMBL:AL161712 RefSeq:NP_499487.1
ProteinModelPortal:Q95PZ4 SMR:Q95PZ4 STRING:Q95PZ4 PaxDb:Q95PZ4
EnsemblMetazoa:Y66D12A.15 GeneID:176584 KEGG:cel:CELE_Y66D12A.15
UCSC:Y66D12A.15 CTD:176584 WormBase:Y66D12A.15 InParanoid:Q95PZ4
NextBio:893182 Uniprot:Q95PZ4
Length = 789
Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
Identities = 264/484 (54%), Positives = 336/484 (69%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NP+L ++LKP RPYQEKSL KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 298 LLAEYDFRNDTLNPNLGIDLKPSTTLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKTLVG 357
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG----- 115
V+A + K CL LA + VSV+QW QFKLWSTIQD Q+ RFT ++K+ A
Sbjct: 358 VTAVTTVNKRCLVLANSNVSVEQWRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATKPV 417
Query: 116 VVVTTYNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
V ++TY+MVA+ G WGLLL+DEVH +PA MFR+V+++ ++HCKL
Sbjct: 418 VCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMFRRVLTIVQAHCKL 477
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTATLVRED++ITDLNFLIGPK+YEANW++L K G IA VQCAEVWCPMT F+S YL+
Sbjct: 478 GLTATLVREDDKITDLNFLIGPKIYEANWMELQKAGHIAKVQCAEVWCPMTSAFYSYYLR 537
Query: 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYG 295
+ ++K L VMNPNKFR C+FLI+FHE+ R DKIIVF+DN+FAL YA++++KP +YG
Sbjct: 538 SQIARKL-LLAVMNPNKFRICQFLIKFHER-RNDKIIVFSDNVFALKRYAIEMQKPFLYG 595
Query: 296 ATSHVERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGR 339
TS ER KILQ F+ + +NTIF+SK IS+H GSRRQEAQRLGR
Sbjct: 596 ETSQNERMKILQNFQYNPRVNTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRLGR 655
Query: 340 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPP 399
ILRAK D ++NAFFYSLVS DT EM YS KRQ+FL++QGY++KV+ +LP
Sbjct: 656 ILRAKKHSTD-------QFNAFFYSLVSQDTVEMGYSRKRQRFLVNQGYAYKVVNNLPGM 708
Query: 400 DSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQ 459
+ DL + QL LL +VL+ D E + E+ D + +RR A +M++MSG Q
Sbjct: 709 EL-EDLKLASKESQLQLLQQVLATSDADAEEEDVKEELADGTIRISRREA-TMASMSGGQ 766
Query: 460 GMVY 463
G Y
Sbjct: 767 GAQY 770
>ASPGD|ASPL0000009371 [details] [associations]
symbol:AN8201 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016973
"poly(A)+ mRNA export from nucleus" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001302
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 OMA:SRVTDPQ TIGRFAMs:TIGR00603
EnsemblFungi:CADANIAT00004248 Uniprot:C8V766
Length = 818
Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
Identities = 261/490 (53%), Positives = 343/490 (70%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 303 LEEYDFRNDEINPTLDIDLKPAARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 362
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + G++V+TY
Sbjct: 363 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRSTGIIVSTY 422
Query: 122 NMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ WGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 423 SMVSQTRARSHDAQKMMDWIQSREWGLMILDEVHVVPAIMFRKVTSAIATQSKLGLTATL 482
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY++ E S+K
Sbjct: 483 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYMR-EKSRK 541
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY MNP KF+AC+FLI +HE+ RGDK+IVF+DN++AL +YA+KL+K IYG T E
Sbjct: 542 AALLYTMNPRKFQACQFLIDYHEK-RGDKVIVFSDNVYALEKYALKLKKAYIYGGTPQNE 600
Query: 302 RTKILQAFKCSRDLNTIFLSKI----------------SSHAGSRRQEAQRLGRILRAKG 345
R +IL+ F+ + +NTIFLSKI SSH GSRRQEAQRLGRILRAK
Sbjct: 601 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 660
Query: 346 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 405
+ + E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 661 RND-------EGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 713
Query: 406 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED--ADDIALHKAR------RIAGSMSAMSG 457
+Y E+ LL +V+ + + +E + +D ++ + ++AR R A ++S ++G
Sbjct: 714 AYATPAERRELLQEVMLQNESSADVENVTDDLFSERSSGNRARAKPGVKRSAATLSGLAG 773
Query: 458 AQGMVYMEYS 467
+ M Y+EY+
Sbjct: 774 GEDMAYIEYN 783
>GENEDB_PFALCIPARUM|PF10_0369 [details] [associations]
symbol:PF10_0369 "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
EMBL:AE014185 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 HOGENOM:HOG000160172 KO:K10843 TIGRFAMs:TIGR00603
RefSeq:XP_001347653.1 ProteinModelPortal:Q8IJ31
EnsemblProtists:PF10_0369:mRNA GeneID:810526 KEGG:pfa:PF10_0369
EuPathDB:PlasmoDB:PF3D7_1037600 OMA:GDEDEFG ProtClustDB:CLSZ2432546
Uniprot:Q8IJ31
Length = 886
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 220/458 (48%), Positives = 283/458 (61%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D NP+L LK H Q R YQEK+L KMF NGR+RSGIIVLPCG GK+L G
Sbjct: 362 LLMEYDFRRDKKNPNLICSLKSHVQIRYYQEKALRKMFSNGRSRSGIIVLPCGVGKTLTG 421
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK-ERFRGN-AGVVV 118
++AA IKKS L L T+AV+V+QW QF+ ++ I I TSD K + + N AGV++
Sbjct: 422 ITAASTIKKSALFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKLDLWPINEAGVLI 481
Query: 119 TTYNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+++ G WGLL+ DEV PA FR++ + KSHCKLGLT
Sbjct: 482 STYTMLSYSGKRSEQSLRIVNDIRRREWGLLVFDEVQFAPAPSFRRINDIVKSHCKLGLT 541
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED I DL+++IGPKLYEANW++L GF+A C E+WC M F+ YLK N
Sbjct: 542 ATLVREDLLIRDLHWIIGPKLYEANWVELQNKGFLAKALCKEIWCSMPCSFYKYYLKS-N 600
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
S K+ LY NP K CE+LI++HEQ DKIIVF+DN+FAL A L KP IYG S
Sbjct: 601 SFIKRRLYTCNPRKLMMCEYLIKYHEQNN-DKIIVFSDNIFALLHIAKTLNKPFIYGKLS 659
Query: 299 HVERTKILQAFKCSRDLNTIFLSKISSHA----------------GSRRQEAQRLGRILR 342
+ER I+ FK +NTI LSK+ +A SRRQEAQRLGRI+R
Sbjct: 660 PIERIAIINKFKHDSSINTILLSKVGDNAIDIPIANVVIQISFNFASRRQEAQRLGRIIR 719
Query: 343 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 402
K K ++ + ++FFYSLVS DT EM YS KRQ+FLI+QGY++ V++ +
Sbjct: 720 PKNKANEKK--NINDPDSFFYSLVSKDTIEMCYSDKRQRFLINQGYAYNVLSDNIVDFNK 777
Query: 403 ADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI 440
+L Y Q LL +L++ DD +DED DD+
Sbjct: 778 LNLVYKNKKIQENLLKCILASTDDG----NMDED-DDL 810
>UNIPROTKB|Q8IJ31 [details] [associations]
symbol:PF10_0369 "DNA repair helicase rad25, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004003 EMBL:AE014185 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 HOGENOM:HOG000160172 KO:K10843
TIGRFAMs:TIGR00603 RefSeq:XP_001347653.1 ProteinModelPortal:Q8IJ31
EnsemblProtists:PF10_0369:mRNA GeneID:810526 KEGG:pfa:PF10_0369
EuPathDB:PlasmoDB:PF3D7_1037600 OMA:GDEDEFG ProtClustDB:CLSZ2432546
Uniprot:Q8IJ31
Length = 886
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 220/458 (48%), Positives = 283/458 (61%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D NP+L LK H Q R YQEK+L KMF NGR+RSGIIVLPCG GK+L G
Sbjct: 362 LLMEYDFRRDKKNPNLICSLKSHVQIRYYQEKALRKMFSNGRSRSGIIVLPCGVGKTLTG 421
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK-ERFRGN-AGVVV 118
++AA IKKS L L T+AV+V+QW QF+ ++ I I TSD K + + N AGV++
Sbjct: 422 ITAASTIKKSALFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKLDLWPINEAGVLI 481
Query: 119 TTYNMVAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+++ G WGLL+ DEV PA FR++ + KSHCKLGLT
Sbjct: 482 STYTMLSYSGKRSEQSLRIVNDIRRREWGLLVFDEVQFAPAPSFRRINDIVKSHCKLGLT 541
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED I DL+++IGPKLYEANW++L GF+A C E+WC M F+ YLK N
Sbjct: 542 ATLVREDLLIRDLHWIIGPKLYEANWVELQNKGFLAKALCKEIWCSMPCSFYKYYLKS-N 600
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
S K+ LY NP K CE+LI++HEQ DKIIVF+DN+FAL A L KP IYG S
Sbjct: 601 SFIKRRLYTCNPRKLMMCEYLIKYHEQNN-DKIIVFSDNIFALLHIAKTLNKPFIYGKLS 659
Query: 299 HVERTKILQAFKCSRDLNTIFLSKISSHA----------------GSRRQEAQRLGRILR 342
+ER I+ FK +NTI LSK+ +A SRRQEAQRLGRI+R
Sbjct: 660 PIERIAIINKFKHDSSINTILLSKVGDNAIDIPIANVVIQISFNFASRRQEAQRLGRIIR 719
Query: 343 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 402
K K ++ + ++FFYSLVS DT EM YS KRQ+FLI+QGY++ V++ +
Sbjct: 720 PKNKANEKK--NINDPDSFFYSLVSKDTIEMCYSDKRQRFLINQGYAYNVLSDNIVDFNK 777
Query: 403 ADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI 440
+L Y Q LL +L++ DD +DED DD+
Sbjct: 778 LNLVYKNKKIQENLLKCILASTDDG----NMDED-DDL 810
>UNIPROTKB|O53873 [details] [associations]
symbol:ercc3 "PROBABLE DNA HELICASE ERCC3" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677
EMBL:BX842574 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K10843 OMA:YAYTIVD EMBL:AL123456
PIR:E70815 RefSeq:NP_215376.2 RefSeq:YP_006514212.1
ProteinModelPortal:O53873 SMR:O53873 PRIDE:O53873
EnsemblBacteria:EBMYCT00000003571 GeneID:13318763 GeneID:885425
KEGG:mtu:Rv0861c KEGG:mtv:RVBD_0861c PATRIC:18150439
TubercuList:Rv0861c HOGENOM:HOG000239540 ProtClustDB:CLSK871863
Uniprot:O53873
Length = 542
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 127/382 (33%), Positives = 195/382 (51%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGXXXXXXXXXXXXXXXX 144
+ +++ +++I F+ + KE R V ++TY M+
Sbjct: 231 KRELVARTSLTENEIGEFSGERKE-IRP---VTISTYQMIT---RRTKGEYRHLELFDSR 283
Query: 145 XWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKIS 324
++ +V L L E +L P+I G+T ER + AF+ ++ T+ +SK++
Sbjct: 402 DEQ---TLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 457
Query: 325 SHA----------------GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 368
+ + GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD-----GGG-----AIFYSVVAR 507
Query: 369 DTQEMFYSTKRQQFLIDQGYSF 390
D+ + Y+ RQ+FL +QGY +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGY 529
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 496 467 0.00098 118 3 11 22 0.50 33
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 618 (66 KB)
Total size of DFA: 284 KB (2150 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.98u 0.24s 41.22t Elapsed: 00:00:02
Total cpu time: 40.99u 0.24s 41.23t Elapsed: 00:00:02
Start: Tue May 21 08:20:07 2013 End: Tue May 21 08:20:09 2013