BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010991
(496 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FUG4|XPB2_ARATH DNA repair helicase XPB2 OS=Arabidopsis thaliana GN=XPB2 PE=2 SV=1
Length = 766
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/511 (86%), Positives = 472/511 (92%), Gaps = 18/511 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWA+QFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 317 VSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVTT 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNM+AFGGKRSEE+EKIIEE+RNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 497 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 556
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ERTKIL+AFK S+ +NT+FLSK ISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTKILEAFKTSKTVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+G+
Sbjct: 617 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSS 676
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
L YH +EQL+LLGKVL+AGDD VGLEQL+ED D AL K RR GSMSAMSGA G VYM
Sbjct: 677 LGYHSQEEQLSLLGKVLNAGDDMVGLEQLEEDTDGKAL-KTRRSMGSMSAMSGANGRVYM 735
Query: 465 EYSTGQKKLGLGQKGKPKDPSKRHYLFKRRF 495
EY++G++K G Q KPKDP+KRH +FK+R+
Sbjct: 736 EYNSGRQKSG-NQSKKPKDPTKRHNIFKKRY 765
>sp|Q38861|XPB1_ARATH DNA repair helicase XPB1 OS=Arabidopsis thaliana GN=XPB1 PE=2 SV=3
Length = 767
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/511 (87%), Positives = 476/511 (93%), Gaps = 17/511 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 317 VSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTT 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEE+RNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 497 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 556
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ERTKIL+AFK S+D+NT+FLSK ISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+G+
Sbjct: 617 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSS 676
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
LSYH +EQL+LLGKV++AGDD VGLEQL+ED D +AL KARR GSMS MSG++GMVYM
Sbjct: 677 LSYHSQEEQLSLLGKVMNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSVMSGSKGMVYM 736
Query: 465 EYSTGQKKLGLGQKGKPKDPSKRHYLFKRRF 495
EY++G+ K G Q KPKDP+KRH LFK+R+
Sbjct: 737 EYNSGRHKSG-QQFKKPKDPTKRHNLFKKRY 766
>sp|O00835|ERCC3_DICDI TFIIH basal transcription factor complex helicase repB subunit
OS=Dictyostelium discoideum GN=repB PE=2 SV=1
Length = 800
Score = 624 bits (1608), Expect = e-178, Method: Compositional matrix adjust.
Identities = 317/520 (60%), Positives = 372/520 (71%), Gaps = 43/520 (8%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP+LN++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G
Sbjct: 293 VLEEYDFRNDTVNPNLNIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSG 352
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS L L T+AVSV+QW +QFKLWS I++ QI +FTSD+KE+ AGV +TT
Sbjct: 353 ITAACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEERQISKFTSDNKEKISNVAGVTITT 412
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MVAFGG+RS ES KI+ EI NREWGL+L+DEVHVVPA MFRKV+++TK+HCKLGLTAT
Sbjct: 413 YTMVAFGGRRSAESLKIMNEITNREWGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLTAT 472
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+REDE+I DLNFLIGPKLYEANWLDL K GF+ANV C+EVWCPMT EF+ EYL ++
Sbjct: 473 LLREDEKIQDLNFLIGPKLYEANWLDLQKAGFLANVSCSEVWCPMTAEFYKEYLINDSQG 532
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ LY MNPNKFRACE+LIRFHE QRGDKIIVF+DN++AL +YA L + IYG TS
Sbjct: 533 KKKLLYTMNPNKFRACEYLIRFHE-QRGDKIIVFSDNVYALQKYAKGLGRYFIYGPTSGH 591
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER IL F+ + TIF+SK +SSH GSRRQEAQRLGRILR K
Sbjct: 592 ERMSILSKFQHDPTVRTIFISKVGDTSIDIPEATVIIQVSSHYGSRRQEAQRLGRILRPK 651
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
K + YNAFFYSLVS DTQEM+YSTKRQQFLIDQGYSFKVI+ LP D +
Sbjct: 652 PKSDGL-------YNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVISELPGIDQEVN 704
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI----------ALHKARRIAGSMSA 454
L Y +QL LL +VL G+D+ E L+ED DDI A +R GS A
Sbjct: 705 LKYSSKQDQLDLLAQVLGEGEDSGKNEILEEDFDDITRGAKKSKSSAPTVSRTTGGSTRA 764
Query: 455 MSGAQGMVYMEYSTGQKKLGLGQKGKPKDPSKRHYLFKRR 494
+SG M YMEY K +H LFK+R
Sbjct: 765 LSGGNDMNYMEYQA---------PAIYKSIPTQHALFKQR 795
>sp|Q5RA62|ERCC3_PONAB TFIIH basal transcription factor complex helicase XPB subunit
OS=Pongo abelii GN=ERCC3 PE=2 SV=1
Length = 782
Score = 590 bits (1520), Expect = e-167, Method: Compositional matrix adjust.
Identities = 302/516 (58%), Positives = 376/516 (72%), Gaps = 50/516 (9%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 458
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 459 QGMVYMEYSTGQKKLGLGQKGKPKDPSKR-HYLFKR 493
VYMEY + + K PSK H LFKR
Sbjct: 754 DDTVYMEYHSSRSKA----------PSKHVHPLFKR 779
>sp|P19447|ERCC3_HUMAN TFIIH basal transcription factor complex helicase XPB subunit
OS=Homo sapiens GN=ERCC3 PE=1 SV=1
Length = 782
Score = 589 bits (1519), Expect = e-167, Method: Compositional matrix adjust.
Identities = 302/516 (58%), Positives = 376/516 (72%), Gaps = 50/516 (9%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 458
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 459 QGMVYMEYSTGQKKLGLGQKGKPKDPSKR-HYLFKR 493
VYMEY + + K PSK H LFKR
Sbjct: 754 DDTVYMEYHSSRSKA----------PSKHVHPLFKR 779
>sp|Q60HG1|ERCC3_MACFA TFIIH basal transcription factor complex helicase XPB subunit
OS=Macaca fascicularis GN=ERCC3 PE=2 SV=1
Length = 782
Score = 589 bits (1519), Expect = e-167, Method: Compositional matrix adjust.
Identities = 302/516 (58%), Positives = 376/516 (72%), Gaps = 50/516 (9%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 458
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 459 QGMVYMEYSTGQKKLGLGQKGKPKDPSKR-HYLFKR 493
VYMEY + + K PSK H LFKR
Sbjct: 754 DDTVYMEYHSSRSKA----------PSKHVHPLFKR 779
>sp|Q1RMT1|ERCC3_BOVIN TFIIH basal transcription factor complex helicase XPB subunit
OS=Bos taurus GN=ERCC3 PE=2 SV=1
Length = 782
Score = 586 bits (1511), Expect = e-166, Method: Compositional matrix adjust.
Identities = 296/509 (58%), Positives = 371/509 (72%), Gaps = 36/509 (7%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSSQVSRRF-GTMSSMSGADDTVYM 759
Query: 465 EYSTGQKKLGLGQKGKPKDPSKRHYLFKR 493
EY + + K H LFKR
Sbjct: 760 EYHSSRSKTSTKHV---------HPLFKR 779
>sp|Q7ZVV1|ERCC3_DANRE TFIIH basal transcription factor complex helicase XPB subunit
OS=Danio rerio GN=ercc3 PE=2 SV=1
Length = 782
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 299/515 (58%), Positives = 373/515 (72%), Gaps = 47/515 (9%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+NM+LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 290 LLAEYDFRNDTVNPDINMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 349
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L ++VSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 350 VTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 408
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 409 YSMLGHTTKRSWEAERVMEWMKSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 468
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 469 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 527
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLIRFHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 528 KRILLYTMNPNKFRACQFLIRFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 586
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 587 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 646
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ EEYNA+FYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 647 KGMV------AEEYNAYFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 699
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI-----ALHKARRIAGSMSAMSGAQ 459
L + DEQ LL KVL+A D LD + + + + R AG+MS+MSGA
Sbjct: 700 LMFSTRDEQQQLLQKVLAASD-------LDAEEEVVMGEVGGKPQFSRRAGTMSSMSGAD 752
Query: 460 GMVYMEYSTGQ-KKLGLGQKGKPKDPSKRHYLFKR 493
+YMEY + K +G+ P LFKR
Sbjct: 753 DALYMEYQMPRGSKASVGKNIHP--------LFKR 779
>sp|P49135|ERCC3_MOUSE TFIIH basal transcription factor complex helicase XPB subunit
OS=Mus musculus GN=Ercc3 PE=2 SV=1
Length = 783
Score = 583 bits (1502), Expect = e-165, Method: Compositional matrix adjust.
Identities = 298/516 (57%), Positives = 374/516 (72%), Gaps = 50/516 (9%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 292 LLAEYDFRNDTLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 351
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 352 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 410
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 411 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTAT 470
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 471 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 529
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 530 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 588
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 589 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 648
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 649 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 701
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH------KARRIAGSMSAMSGA 458
L++ +EQ LL KVL+A D LD + + +A +A R G+MS++SGA
Sbjct: 702 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSGQASRRCGTMSSLSGA 754
Query: 459 QGMVYMEYSTGQKKLGLGQKGKPKDPSKR-HYLFKR 493
VYMEY + + K SK H LFKR
Sbjct: 755 DDTVYMEYHSSRSKAS----------SKHVHPLFKR 780
>sp|Q4G005|ERCC3_RAT TFIIH basal transcription factor complex helicase XPB subunit
OS=Rattus norvegicus GN=Ercc3 PE=2 SV=1
Length = 782
Score = 582 bits (1499), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/515 (57%), Positives = 373/515 (72%), Gaps = 48/515 (9%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND++NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 700
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH------KARRIAGSMSAMSGA 458
L++ +EQ LL KVL+A D LD + + +A +A R G+MS++SGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSGQASRRFGTMSSLSGA 753
Query: 459 QGMVYMEYSTGQKKLGLGQKGKPKDPSKRHYLFKR 493
VYMEY + + K H LFKR
Sbjct: 754 DDTVYMEYHSSRNKASTKHV---------HPLFKR 779
>sp|Q00578|RAD25_YEAST DNA repair helicase RAD25 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SSL2 PE=1 SV=1
Length = 843
Score = 573 bits (1478), Expect = e-163, Method: Compositional matrix adjust.
Identities = 288/498 (57%), Positives = 366/498 (73%), Gaps = 36/498 (7%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 397 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 457 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 517 LVREDDKIGDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RETAR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+K+ KP IYG+T
Sbjct: 576 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQ 634
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER ILQ F+ + +NTIFLSK ISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 694
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENIPN 747
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMSA 454
L+Y E+ LL +VL ++A G+E + +DAD+ KA R GS+S
Sbjct: 748 LAYASPRERRELLQEVLLKNEEAAGIE-VGDDADNSVGRGSNGHKRFKSKAVRGEGSLSG 806
Query: 455 MSGAQGMVYMEYSTGQKK 472
++G + M YMEYST + K
Sbjct: 807 LAGGEDMAYMEYSTNKNK 824
>sp|Q5ZKK7|ERCC3_CHICK TFIIH basal transcription factor complex helicase XPB subunit
OS=Gallus gallus GN=ERCC3 PE=2 SV=1
Length = 788
Score = 571 bits (1472), Expect = e-162, Method: Compositional matrix adjust.
Identities = 290/497 (58%), Positives = 368/497 (74%), Gaps = 27/497 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 288 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 347
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ + + ++T
Sbjct: 348 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDK-PIDCSIAIST 406
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E +++REWGL+++DEVH +PA MFR+V+++ ++HCKL LTAT
Sbjct: 407 YSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAKMFRRVLTIVQAHCKLELTAT 466
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 467 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 525
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG T+
Sbjct: 526 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQG 584
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGR+LRAK
Sbjct: 585 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 644
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 645 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 697
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
LS+ +EQ LL KVL A D E + + ++ +RR G+MS+MSGA VYM
Sbjct: 698 LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSVQMSRR-TGTMSSMSGADDAVYM 756
Query: 465 EYSTGQKKLGLGQKGKP 481
EY + + K + P
Sbjct: 757 EYHSSRSKASSNKHIHP 773
>sp|O13768|ERCC3_SCHPO Probable DNA repair helicase ercc3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ercc3 PE=1 SV=1
Length = 804
Score = 565 bits (1455), Expect = e-160, Method: Compositional matrix adjust.
Identities = 294/520 (56%), Positives = 370/520 (71%), Gaps = 44/520 (8%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRNDN+NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 299 LLEEYDFRNDNINPDLPIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 358
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF WS I+ D I FT+D KERF AGVVV+T
Sbjct: 359 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWSNIKPDHIAVFTADHKERFHSEAGVVVST 418
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +L+DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 419 YSMVANTRNRSYDSQKMMDFLTGREWGFILLDEVHVVPAAMFRRVVTTIAAHTKLGLTAT 478
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPK+YEANW+DL + G IA VQCAEVWC MT EF++EYL +ENS+
Sbjct: 479 LVREDDKIDDLNFLIGPKMYEANWMDLAQKGHIAKVQCAEVWCAMTTEFYNEYL-RENSR 537
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 538 KRMLLYIMNPKKFQACQFLIDYHE-KRGDKIIVFSDNVYALRAYAIKLGKYFIYGGTPQQ 596
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +IL+ F+ + +NTIFLSK ISSH GSRRQEAQRLGRILRAK
Sbjct: 597 ERMRILENFQYNELVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 656
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ E +NAFFYSLVS DTQEM+YS+KRQ FLIDQGY+FKVIT+L ++ +
Sbjct: 657 RR-------NDEGFNAFFYSLVSKDTQEMYYSSKRQAFLIDQGYAFKVITNLKGMENLPN 709
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI---------ALHKARRIAGSMSAM 455
L+Y E+L LL +VL ++A L +D +D A KA+R +GS+S +
Sbjct: 710 LAYASKAERLELLQEVLLQNEEAADL----DDGEDTSFGSRSLSRAPAKAKRSSGSLSTL 765
Query: 456 SGAQGMVYMEYSTGQKKLGLGQKGKPKDPSKRHYLFKRRF 495
+GA M Y+EY+ K KD + H LF++
Sbjct: 766 AGADNMAYVEYNKS------ANKQLKKDSKEHHALFRKHL 799
>sp|Q02870|ERCC3_DROME DNA excision repair protein haywire OS=Drosophila melanogaster
GN=hay PE=1 SV=2
Length = 798
Score = 553 bits (1425), Expect = e-156, Method: Compositional matrix adjust.
Identities = 279/484 (57%), Positives = 349/484 (72%), Gaps = 27/484 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 307 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 366
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 367 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 425
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 426 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 485
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 486 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS- 544
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 545 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 603
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +ILQ FK + +NTIF+SK ISSH GSRRQEAQRLGRILRAK
Sbjct: 604 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 663
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ +D
Sbjct: 664 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSD 717
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDAD--DIALHKARRIAGSMSAMSGAQGMV 462
L Y +EQ LL VLSA D E+L + A R G +S+MSG +
Sbjct: 718 LMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPSGSGGAVRRVGGLSSMSGGDDAI 777
Query: 463 YMEY 466
Y E+
Sbjct: 778 YYEH 781
>sp|C4V922|RAD25_NOSCE Probable DNA repair helicase RAD25 homolog OS=Nosema ceranae
(strain BRL01) GN=RAD25 PE=3 SV=1
Length = 659
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/481 (54%), Positives = 332/481 (69%), Gaps = 31/481 (6%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDF+ND V ++LKP R YQE L+KMF NGRARSGIIVLPCG+GK+LVG
Sbjct: 179 LIEEYDFKNDTVLESFFIDLKPSTMIRSYQETCLNKMFCNGRARSGIIVLPCGSGKTLVG 238
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKKSCL L T+AVSV+QW Q L++ I D ICRFTS+ KE ++ G+++TT
Sbjct: 239 ITALTTIKKSCLILCTSAVSVEQWRQQTMLFTNISGDNICRFTSEYKEWYKDKCGIIITT 298
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A+ GKRS E++KI++ I++ EWGLLL+DEVHVVPA MFRKVISL HCKLGLTAT
Sbjct: 299 YTMLAYNGKRSPEAQKIMDLIQSTEWGLLLLDEVHVVPAMMFRKVISLVTHHCKLGLTAT 358
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V+C EVWC MT EF+ EYL + S+
Sbjct: 359 LVREDDKIEDLNFLIGPKLYEADWQDLSAKGHIAKVECFEVWCGMTGEFYKEYL-IQTSR 417
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ L +MNP KF+ACE+LI HE +GDKIIVF+D++ AL YA+KL KP IYG T
Sbjct: 418 KKRLLSIMNPTKFQACEYLISRHE-AKGDKIIVFSDSVAALKSYALKLGKPFIYGPTGQT 476
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +IL+ F+ + +NTIFLSK ISSH GSRRQEAQRLGRILRAK
Sbjct: 477 ERMRILKQFQTNPLINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 536
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ ++ FFYSLVS DT EMFYS+KRQQFL+DQGYSF +IT +P +
Sbjct: 537 RR-------NDPDFKVFFYSLVSKDTDEMFYSSKRQQFLVDQGYSFNIITEIPEIYKNEN 589
Query: 405 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 464
Y +Q LL VL + D + + + D ++I ++ +G + +G GM YM
Sbjct: 590 RVYKSKSQQKELLVSVLLSSDKELESDT-EADNEEIGVY-----SGILKGSTGVDGMAYM 643
Query: 465 E 465
E
Sbjct: 644 E 644
>sp|Q8SSK1|RAD25_ENCCU Probable DNA repair helicase RAD25 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RAD25 PE=3 SV=1
Length = 696
Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/439 (55%), Positives = 310/439 (70%), Gaps = 25/439 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND V L ++LKP R YQE L+KMFGNGRARSGIIVLPCG+GK++VG
Sbjct: 208 LIEEYDFRNDKVLRSLQIDLKPTTIIRSYQEICLNKMFGNGRARSGIIVLPCGSGKTIVG 267
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKK+CL L T+AVSV+QW Q ++ + D + RFTSD KE + ++G+V+TT
Sbjct: 268 ITAISTIKKNCLVLCTSAVSVEQWKQQTLQFTNMAPDGVGRFTSDHKEWPKDDSGIVITT 327
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A+ GKRS E++KI++ IR EWGLL++DEVHVVPA MFR+V+SL HCKLGLTAT
Sbjct: 328 YTMLAYTGKRSHEAQKIMDLIRRTEWGLLVLDEVHVVPAMMFRRVLSLVSHHCKLGLTAT 387
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V C EVWC MT +F+ EYL + ++
Sbjct: 388 LVREDDKIEDLNFLIGPKLYEADWQDLSAKGHIARVSCIEVWCGMTGDFYREYL-SQPTR 446
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L +MNP KF+ CE+LI HE RGDKIIVF+D+++AL YA+KL KP IYG T
Sbjct: 447 RRRLLSIMNPTKFQVCEYLINKHE-SRGDKIIVFSDSVYALKAYALKLGKPFIYGPTGQT 505
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +IL+ F+ + +NTIFLSK ISSH GSRRQEAQRLGRILRAK
Sbjct: 506 ERMRILKQFQTNPVINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 565
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ ++ +FYSLVS DT EMFYS+KRQQFLIDQGY+F ++T +P
Sbjct: 566 RR-------NDPDFKVYFYSLVSKDTDEMFYSSKRQQFLIDQGYTFTILTDIPEVHENEH 618
Query: 405 LSYHRLDEQLALLGKVLSA 423
Y +Q LL VL A
Sbjct: 619 CVYKTKGQQRELLAGVLLA 637
>sp|Q6E6J3|RAD25_ANTLO Probable DNA repair helicase RAD25 homolog OS=Antonospora locustae
GN=RAD25 PE=3 SV=1
Length = 687
Score = 482 bits (1241), Expect = e-135, Method: Compositional matrix adjust.
Identities = 239/439 (54%), Positives = 307/439 (69%), Gaps = 25/439 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
M+EEYDFR+D L+M+L+ R YQE SL+KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 203 MIEEYDFRDDVALRSLDMDLRDTVSIRTYQEVSLNKMFGNRRARSGVIVLPCGAGKTLVG 262
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A C IKK C+ L T+ VSV+QW Q +ST+ D + RFTS+ KE F +AG+++TT
Sbjct: 263 ITAMCTIKKPCIVLCTSGVSVEQWRQQVLAFSTVSADAVSRFTSERKEMFEADAGILITT 322
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+AF G+RS E+++++E +R EWGL+++DEVHVVPA MFRKV+S HCKLGLTAT
Sbjct: 323 YTMLAFSGRRSAEAQRVMEWLRGTEWGLMILDEVHVVPAAMFRKVVSAVSHHCKLGLTAT 382
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V+C EVWC MT EF+ EYL ++ +
Sbjct: 383 LVREDDKIEDLNFLIGPKLYEADWQDLSMQGHIARVECVEVWCDMTAEFYREYL-GQDPR 441
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L +MNP KF+ CEFLIR HE G+KIIVF+DN+ AL YA+KL KP IYG T
Sbjct: 442 RRRVLSIMNPAKFQTCEFLIRKHEAL-GEKIIVFSDNVLALRTYALKLGKPFIYGPTGQT 500
Query: 301 ERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEAQRLGRILRAK 344
ER +IL+ F+ + +NT+FLSK ISSH GSRRQEAQRLGRILRAK
Sbjct: 501 ERMRILRQFQTNPAINTLFLSKVGDTSIDLPEASCLIQISSHFGSRRQEAQRLGRILRAK 560
Query: 345 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 404
+ + +FY+LVS DT+EM+YS KRQQFL+DQGY+F+ +T+L
Sbjct: 561 RR-------NDPGFRVYFYTLVSKDTEEMYYSRKRQQFLVDQGYTFRTVTALEGFRDTDV 613
Query: 405 LSYHRLDEQLALLGKVLSA 423
+ EQ LL VL A
Sbjct: 614 RVFRGKAEQRELLATVLLA 632
>sp|A9CRJ7|RAD25_ENTBH Probable DNA repair helicase RAD25 homolog OS=Enterocytozoon
bieneusi (strain H348) GN=RAD25 PE=3 SV=1
Length = 609
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 240/448 (53%), Positives = 305/448 (68%), Gaps = 35/448 (7%)
Query: 1 MLEEYDF---RNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKS 57
+++EYD+ + N+ +L+++LKP R YQE SL+KM GNGRARSGIIVLPCG+GK+
Sbjct: 161 LIDEYDYTAYESVNMIKNLHIDLKPSCHIRSYQEISLNKMLGNGRARSGIIVLPCGSGKT 220
Query: 58 LVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG----- 112
LVG++A IKKS + L T+AVSV+QW L++TI + RFTSD KE F
Sbjct: 221 LVGITAISTIKKSAIILCTSAVSVEQWKQSILLFTTINPYSVSRFTSDCKEWFENYNVEN 280
Query: 113 --NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170
G+++TTY+M++F GKRS + ++II +I WG++++DEVHVVPA MFRKV+S
Sbjct: 281 TSQGGILITTYSMLSFSGKRSYDVQRIINKIFAYNWGIMILDEVHVVPAQMFRKVVSSVL 340
Query: 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF 230
CKLGLTATLVRED++I DLNFLIGPKLYEANW DL G IA V+C+EVWC MT EF+
Sbjct: 341 HQCKLGLTATLVREDDKIEDLNFLIGPKLYEANWQDLSDKGHIAKVECSEVWCEMTAEFY 400
Query: 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK 290
EYL ++ SKK+ L +MNP K + CE+LI+ HE Q GDKIIVF+D++FAL EYA+K++K
Sbjct: 401 REYLIQDTSKKR-LLSIMNPVKIQMCEYLIQKHEAQ-GDKIIVFSDSVFALKEYAIKMKK 458
Query: 291 PMIYGATSHVERTKILQAFKCSRDLNTIFLSK----------------ISSHAGSRRQEA 334
P IYG TS ER KIL+ F+ + +NT+FLSK ISSH GSRRQEA
Sbjct: 459 PFIYGPTSQTERMKILKQFQINSKINTLFLSKVGDTSIDLPEATCLIQISSHFGSRRQEA 518
Query: 335 QRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 394
QRLGR+LRAK + + A+FYSLVS DT+EM YS KRQQFLIDQGYSFK I
Sbjct: 519 QRLGRVLRAKKR-------NNPNFKAYFYSLVSKDTEEMHYSAKRQQFLIDQGYSFKTII 571
Query: 395 SLPPPDSGADLSYHRLDEQLALLGKVLS 422
Y EQ LL +LS
Sbjct: 572 GFNDMYYNETRLYKTKQEQKELLFNLLS 599
>sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicus filamentous virus
(isolate Iceland/Hveragerdi) GN=SIFV0022 PE=4 SV=1
Length = 559
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 93/177 (52%), Gaps = 9/177 (5%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKK----SCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100
+GII P G+GKS++ + +A I K + + A N+ ++ + QF+ ++ +D
Sbjct: 194 NGIIKAPTGSGKSVIAILSALEILKNKNNAKIVYAVNSTTLLK---QFQNFAKKEDLPFV 250
Query: 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160
+ + E +G + + K+ E EK+ E + N + L+++DE H PA+
Sbjct: 251 LVSGEIDEIKKGERSDFIALSISYYYSKKKRNEHEKLKELVTNAD--LVIIDEAHHTPAN 308
Query: 161 MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQ 217
+ + ++ + + +LGL+AT +RED + ++ L+G + ++ +LV+ ++ ++
Sbjct: 309 IVKSLLLDSPNSIRLGLSATPIREDGKELEIMGLLGKISFTIDYTELVRNRYLVPIE 365
>sp|Q5UQ46|YL396_MIMIV Putative ATP-dependent RNA helicase L396 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L396 PE=3 SV=1
Length = 519
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 27 RPYQEKSLSKMF-GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA 85
RP+Q+ K+ G G++V+ CG+GK+ V + AC+ K L + DQ
Sbjct: 99 RPHQQMVSDKIIKGMEEGGGGVLVMGCGSGKTNVAIYIACKFKLRTLFVVHKTFLRDQVI 158
Query: 86 FQFKLWSTIQDDQIC-RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ K + ++ I R + K F VV+ MV K + E +
Sbjct: 159 DRIKSNTNVKKVGIIQRKIVNYKHPF------VVS---MVQSLAKINYNDEIF------K 203
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLY 200
++G++++DEVH + A F V S LG++A R D +N+ +GP L+
Sbjct: 204 DFGMIIIDEVHHMGARNFSTVYQKISSKYMLGISAEYTRTDGMYKIINWYMGPILH 259
>sp|P11107|VD10_BPT5 Probable helicase OS=Enterobacteria phage T5 GN=D10 PE=4 SV=1
Length = 450
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 53 GAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG 112
G GK+++ ++ A + + L + TN + WA + + W + I ++
Sbjct: 111 GFGKTILALALAYKFGQKTLVICTNTSIREMWAAEVRKWFGFEPGII------GSGKYNI 164
Query: 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSH 172
+ +VV+ V K + K+ +G +++DEVH A F + ++ +
Sbjct: 165 DPPIVVSNIQTV---NKHANNLSKV--------FGTVIVDEVHHCVATTFTNFLEISCAR 213
Query: 173 CKLGLTATLVRED 185
K+GL+ TL R+D
Sbjct: 214 YKIGLSGTLKRKD 226
>sp|P53115|INO80_YEAST Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=INO80 PE=1 SV=1
Length = 1489
Score = 39.7 bits (91), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKKS-----CLCLATNAVSVDQWAF-------QFKL-- 90
+GI+ G GK++ +S + ++ + T A ++ W QFK+
Sbjct: 726 NGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILP 785
Query: 91 -WSTIQDDQICRFTSDSKE-RFRGNA--GVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
W D ++ R D K R+ NA V+VT+Y MV ++ +W
Sbjct: 786 YWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANY----------LQKMKW 835
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHC--KLGLTATLVRED-ERITDLNFLIGPKLYEA 202
+++DE + + + +L HC +L LT T ++ + + L I P L+++
Sbjct: 836 QYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDS 894
>sp|A6ZU34|INO80_YEAS7 Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain
YJM789) GN=INO80 PE=3 SV=1
Length = 1495
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKKS-----CLCLATNAVSVDQWAF-------QFKL-- 90
+GI+ G GK++ +S + ++ + T A ++ W QFK+
Sbjct: 732 NGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILP 791
Query: 91 -WSTIQDDQICRFTSDSKE-RFRGNA--GVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
W D ++ R D K R+ NA V+VT+Y MV ++ +W
Sbjct: 792 YWGNANDRKVLRKFWDRKNLRYSKNAPFHVMVTSYQMVVTDANY----------LQKMKW 841
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHC--KLGLTATLVRED-ERITDLNFLIGPKLYEA 202
+++DE + + + +L HC +L LT T ++ + + L I P L+++
Sbjct: 842 QYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDS 900
>sp|O55759|VF161_IIV6 Putative helicase 161L OS=Invertebrate iridescent virus 6
GN=IIV6-161L PE=3 SV=1
Length = 442
Score = 38.9 bits (89), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 48 IVLPC--GAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC---RF 102
+++ C G GK++ ++ AC+++ L + T V ++QW + ++ I
Sbjct: 97 VIISCFTGFGKTIGAINLACKLRLKTLIIVTRVVLMNQWKESILKFCESENKTIPIVEII 156
Query: 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-M 161
+S+SK+ + ++ N+ +E+ +G +++DEVH+V A
Sbjct: 157 SSNSKDEYVMCNFAIINAINIPK------------MEQGFLESFGTVIVDEVHLVMARKT 204
Query: 162 FRKVISLTKSHCKLGLTATLVRED 185
FR ++ +T + + L+AT R D
Sbjct: 205 FRSLLYVTPRYL-IALSATSYRSD 227
>sp|P33919|YEJH_ECOLI Uncharacterized protein YejH OS=Escherichia coli (strain K12)
GN=yejH PE=4 SV=2
Length = 586
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 135/333 (40%), Gaps = 84/333 (25%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLA--TNAVSVD 82
RPYQ++++ + R +IVLP GAGKSLV A + L LA V+ +
Sbjct: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQN 65
Query: 83 QWAFQ-FKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI 141
+Q L + I + R S K F V N+ AF G
Sbjct: 66 HAKYQALGLEADIFAAGLKRKESHGKVVF---GSVQSVARNLDAFQG------------- 109
Query: 142 RNREWGLLLMDEVHVV---PAHMFRKVIS-LTK--SHCK-LGLTAT-------------- 180
E+ LL++DE H + ++++++ LTK H + LGLTAT
Sbjct: 110 ---EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166
Query: 181 --LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
+VR DE+ L +YE ++K G++ + ++ P+ + FS + N
Sbjct: 167 HGMVRGDEKA-----LFRDCIYELPLRYMIKHGYLTPPERLDM--PVVQYDFSRLQAQSN 219
Query: 239 S-----------KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMK 287
KK+Q + P+ ++ F ++G +++FA A E+A +
Sbjct: 220 GLFSEADLNRELKKQQRI---TPHIISQ---IMEFAATRKG--VMIFA----ATVEHAKE 267
Query: 288 L-------RKPMIYGATSHVERTKILQAFKCSR 313
+ +I G T ER +++ FK R
Sbjct: 268 IVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300
>sp|A6QQR4|ERC6L_BOVIN DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L
PE=2 SV=1
Length = 1242
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 30/162 (18%)
Query: 23 HAQPRPYQEKSLS---KMFGNGRARSGIIVLPCGAGKS------LVGVSAACRIKKSCLC 73
H Q YQ++ ++ ++ +GR R GI+ G GK+ L G+ A + L
Sbjct: 93 HNQLYEYQKEGIAFLYSLYRDGR-RGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLI 151
Query: 74 LATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKE-------RFRGNAGVVVTTYNMVAF 126
+ T+ +S W +F W+ ++ F SK+ R + GV++TTY M+
Sbjct: 152 MPTSLIST--WLREFVKWTPGM--RVKTFHGPSKDERTRNLCRIQQRNGVIITTYQMLIN 207
Query: 127 GGKRSEESEKIIEEIRNRE--WGLLLMDEVHVVPAHMFRKVI 166
++ + + +E W +++DE H + + + I
Sbjct: 208 NWQQ-------LSSLNGQEFLWDYVILDEAHKIKSSSTKSAI 242
>sp|Q7S133|SWR1_NEUCR Helicase swr-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=swr-1 PE=3 SV=1
Length = 1845
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 32/202 (15%)
Query: 27 RPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVSA----ACR--IKKSCLCLATNAV 79
R YQ L + G +GI+ G GK++ ++ AC + L + +V
Sbjct: 946 REYQHHGLDWLAGLYANNTNGILADEMGLGKTIQTIALLAHLACHHEVWGPHLVIVPTSV 1005
Query: 80 SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG--------VVVTTYNMVAFGGKRS 131
++ W +FK W +I + + +ER R G V +T+Y MV
Sbjct: 1006 MLN-WEMEFKKW--CPGFKILTYYGNQEERKRKRQGWNNDDVWNVCITSYQMVL------ 1056
Query: 132 EESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT--KSHCKLGLTATLVRED--ER 187
+ +++ R R W +++DE H + ++ +L + +L LT T ++ + E
Sbjct: 1057 -QDQQVF---RRRRWHYMILDEAHNIKNFKSQRWQTLLGFNTQARLLLTGTPLQNNLTEL 1112
Query: 188 ITDLNFLIGPKLYEANWLDLVK 209
+ L FL P+ E ++DL +
Sbjct: 1113 WSLLYFLAPPENGEGGFVDLTE 1134
>sp|Q2NKX8|ERC6L_HUMAN DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L
PE=1 SV=1
Length = 1250
Score = 37.0 bits (84), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 27/148 (18%)
Query: 34 LSKMFGNGRARSGIIVLPCGAGKS------LVGVSAACRIKKSCLCLATNAVSVDQWAFQ 87
L ++ +GR + GI+ G GK+ L G+ A + L + TN ++ W +
Sbjct: 107 LYSLYRDGR-KGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINT--WVKE 163
Query: 88 FKLWSTIQDDQICRFTSDSKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEE 140
F W+ ++ F SK+ R + GV++TTY M+ ++ +
Sbjct: 164 FIKWTPGM--RVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQ-------LSS 214
Query: 141 IRNRE--WGLLLMDEVHVVPAHMFRKVI 166
R +E W +++DE H + + I
Sbjct: 215 FRGQEFVWDYVILDEAHKIKTSSTKSAI 242
>sp|A7TJI3|INO80_VANPO Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1
Length = 1556
Score = 35.8 bits (81), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKKSC-----LCLATNAVSVDQWAF-------QFKL-- 90
+GI+ G GK++ +S + + + T A ++ W QFK+
Sbjct: 820 NGILADEMGLGKTVQSISVLAHLAEKYNIWGPFLVVTPASTLHNWVNEISKFVPQFKILP 879
Query: 91 -WSTIQDDQICRFTSDSKE-RFRGNA--GVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
W D +I R D K R+ ++ V++T+Y MV ++ +W
Sbjct: 880 YWGNSNDRKILRRFWDRKNLRYNKDSPFHVMITSYQMVVSDTSY----------LQKMKW 929
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHC--KLGLTATLVRED-ERITDLNFLIGPKLYEA 202
+++DE + + + +L HC +L LT T ++ + + + L I P L+++
Sbjct: 930 QYMILDEAQAIKSSQSSRWRNLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDS 988
>sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mfd PE=3 SV=1
Length = 697
Score = 35.8 bits (81), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 36/172 (20%)
Query: 28 PYQEKSLSKMFGNGRARSGIIVLPCGA---GKSLVGVSA----ACRIKKSCLCLATNAVS 80
P Q+ +++ + + + + L CG GK+ V + A C K+ + + T ++
Sbjct: 156 PDQDSAINSVLSDMYKSTPMDRLVCGDVGFGKTEVAMRATFLAVCNQKQVAILVPTTLLA 215
Query: 81 ---VDQWAFQFKLWSTIQDDQICRFTSDSK------ERFRGNAGVVVTTYNMVAFGGKRS 131
+ + +FK WST + + + RF S++K GN V++ T+ ++
Sbjct: 216 QQHFNNFTLRFKYWST-KIEILSRFQSETKCNEIINNVNIGNVHVLIGTHKIL------- 267
Query: 132 EESEKIIEEIRNREW---GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
++N +W GLL++DE H H ++ ++ + L LTAT
Sbjct: 268 ---------LKNLKWKNLGLLIVDEEHRFGVHHKEQIKLISNNIDVLTLTAT 310
>sp|Q6FV37|INO80_CANGA Putative DNA helicase INO80 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=INO80
PE=3 SV=1
Length = 1484
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKK-----SCLCLATNAVSVDQWAF-------QFKL-- 90
+GI+ G GK++ +S + + + T A ++ W QFK+
Sbjct: 742 NGILADEMGLGKTVQSISVLAHLAEHHNIWGPFLVVTPASTLHNWVNEISKFVPQFKILP 801
Query: 91 -WSTIQDDQICRFTSDSKE-RFRGNAG--VVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
W + D ++ R D K R+ + V++T+Y MV ++ +W
Sbjct: 802 YWGSANDRKVLRKFWDRKNLRYSEKSPFHVMITSYQMVVADASY----------LQKMKW 851
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHC--KLGLTATLVRED-ERITDLNFLIGPKLYEA 202
+++DE + + + +L HC +L LT T ++ + + + L I P L+++
Sbjct: 852 QYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDS 910
>sp|Q6GZS1|055L_FRG3G Putative helicase 055L OS=Frog virus 3 (isolate Goorha) GN=FV3-055L
PE=4 SV=1
Length = 431
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 18/173 (10%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPC--GAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
RP+Q+ L + +G+ ++ G +L C G GK+ + + R+ L L V QW
Sbjct: 62 RPHQKGVLKEAWGHVTSK-GYCMLKCPPGFGKTFMALELWRRLGLPALVLTNRRVLATQW 120
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
D RF DS+ G ++ G S + +I +
Sbjct: 121 R-----------DSATRFLPDSRVFTSGTPPPDALPRDLYVTG-PASLRNRRIKAKDSPA 168
Query: 145 EWGLLLMDEVHVVPAHM-FRKVISLTKSHCKLGLTATLVREDERITDLNFLIG 196
++ LL++DE H + + + R ++S+ SH LGL+AT +R D+ L G
Sbjct: 169 KF-LLIVDEAHQLTSPVSCRVLLSVRPSHL-LGLSATPMRYDDYHAALGAFFG 219
>sp|Q6CNY4|INO80_KLULA Putative DNA helicase INO80 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=INO80 PE=3 SV=1
Length = 1489
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 74/180 (41%), Gaps = 31/180 (17%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKK-----SCLCLATNAVSVDQWAF-------QFKL-- 90
+GI+ G GK++ +S + + T A ++ W QFK+
Sbjct: 766 NGILADEMGLGKTVQSISVLAHLADRYNIWGPFIVVTPASTLHNWVNEISRFVPQFKILP 825
Query: 91 -WSTIQDDQICRFTSDSKE-RFRGNAG--VVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
W D + R D K R+ +A V+VT+Y MV ++ +W
Sbjct: 826 YWGNANDRKTLRKFWDRKHLRYGRDAPFHVMVTSYQMVVSDASY----------LQKMKW 875
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHC--KLGLTATLVRED-ERITDLNFLIGPKLYEAN 203
+++DE + + + +L HC +L LT T ++ + + + L I P L++++
Sbjct: 876 QYMILDEAQAIKSSQSSRWKTLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSH 935
>sp|Q74Z27|INO80_ASHGO Putative DNA helicase INO80 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=INO80 PE=3 SV=2
Length = 1414
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 48/232 (20%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPR-------PYQEKSL---SKMFGNGRARSGIIVLPC 52
EE +F+N ++ +E QP+ YQ K L + ++ G +GI+
Sbjct: 630 EELNFQNPTSLGEITIE-----QPKILACTLKEYQLKGLNWLANLYDQGI--NGILADEM 682
Query: 53 GAGKSLVGVSAACRIKK-----SCLCLATNAVSVDQWAFQ-------FKL---WSTIQDD 97
G GK++ +S + + + T A ++ W + FK+ W D
Sbjct: 683 GLGKTVQSISVLAHLAERYNIWGPFIVVTPASTLHNWVNEIQKFVPDFKILPYWGNGNDR 742
Query: 98 QICRFTSDSKE-RFRGNAG--VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154
+I R D K R+ +A V++T+Y M+ ++ +W +++DE
Sbjct: 743 KILRRFWDRKHLRYSKDAPFHVMITSYQMIVSDAAY----------LQKMKWQYMILDEA 792
Query: 155 HVVPAHMFRKVISLTKSHC--KLGLTATLVRED-ERITDLNFLIGPKLYEAN 203
+ + + +L HC +L LT T ++ + + L I P L++++
Sbjct: 793 QAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSH 844
>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l
PE=1 SV=1
Length = 1240
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 34 LSKMFGNGRARSGIIVLPCGAGKS------LVGVSAACRIKKSCLCLATNAVSVDQWAFQ 87
L ++ +GR + GI+ G GK+ L G+ A + L + TN ++ W +
Sbjct: 108 LYSLYKDGR-KGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINT--WVNE 164
Query: 88 FKLWSTIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKR--SEESEKIIEE 140
F W+ + +S S+ R + GVV+TTY M+ ++ S + +
Sbjct: 165 FAKWTPGMRVKTFHGSSKSERTRSLTRIQQRNGVVITTYQMLLNNWQQLASFNGQAFV-- 222
Query: 141 IRNREWGLLLMDEVHVV 157
W +++DE H +
Sbjct: 223 -----WDYVILDEAHKI 234
>sp|P31380|FUN30_YEAST ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FUN30 PE=1 SV=1
Length = 1131
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 105 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV---PAHM 161
D ER G V+VTTYN+ A G K + ++NR + +++ DE H++ +
Sbjct: 663 DILERNAGKYDVIVTTYNLAA-GNKYD------VSFLKNRNFNVVVYDEGHMLKNSTSER 715
Query: 162 FRKVISLTKSHCKLGLTATLVRED--ERITDLNFLIGPKLY 200
F K++ + +++ +L LT T ++ + E ++ L F++ P L+
Sbjct: 716 FAKLMKI-RANFRLLLTGTPLQNNLKELMSLLEFIM-PNLF 754
>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l
PE=1 SV=1
Length = 1451
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 34 LSKMFGNGRARSGIIVLPCGAGKS------LVGVSAACRIKKSCLCLATNAVSVDQWAFQ 87
L ++ +GR + GI+ G GK+ L G+ A + L + T+ + W +
Sbjct: 116 LYSLYRDGR-KGGILADDMGLGKTIQVISFLSGMYDAELANHTLLVMPTSLIK--NWVRE 172
Query: 88 FKLWSTIQDDQICRFTSDSK-------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEE 140
F W+ ++ F SK ER + GV++TTY M+ ++ +
Sbjct: 173 FAKWTPGM--RVKEFHGSSKTERNRNLERIQRKGGVIITTYQMLINNYEQLGSNGH---- 226
Query: 141 IRNREWGLLLMDEVHVV 157
R +W +++DE H +
Sbjct: 227 -REFKWDYVILDEAHKI 242
>sp|Q9JIM3|RAD26_MOUSE Putative DNA repair and recombination protein RAD26-like OS=Mus
musculus GN=Rad26l PE=2 SV=2
Length = 699
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 138 IEEIRNREWGLLLMDEVHVV--PAHMFRKVISLTKSHCKLGLTATLVRED 185
+EE+ + EW +++DE H + P +V+ K ++GLT T+++ +
Sbjct: 256 LEELNSLEWSAIIVDEAHRIKNPKARVTEVMKAVKCKVRIGLTGTVLQNN 305
>sp|Q90VY2|EDAR_ORYLA Tumor necrosis factor receptor superfamily member EDAR OS=Oryzias
latipes GN=edar PE=2 SV=1
Length = 514
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 4 EYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63
EY+F N N + Q RP QE ++S G+G G +PC GK G
Sbjct: 34 EYEFFNQTSN-----SCQACPQCRPGQEPNMS--CGHGMKDEGFACVPCPQGKYSKGKYE 86
Query: 64 ACRIKKSC 71
CR K C
Sbjct: 87 ICRRHKDC 94
>sp|A1KSU7|RISB_NEIMF 6,7-dimethyl-8-ribityllumazine synthase OS=Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
GN=ribH PE=3 SV=1
Length = 158
Score = 32.3 bits (72), Expect = 8.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 386 QGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA 441
+ Y F+++++ +SGA +S LD + + VL+ +DA +E+++E A D A
Sbjct: 85 ETYHFELVSN----ESGAGVSRVALDYNIPIANAVLTTENDAQAIERIEEKASDAA 136
>sp|P66037|RISB_NEIMB 6,7-dimethyl-8-ribityllumazine synthase OS=Neisseria meningitidis
serogroup B (strain MC58) GN=ribH PE=3 SV=1
Length = 158
Score = 32.3 bits (72), Expect = 8.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 386 QGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA 441
+ Y F+++++ +SGA +S LD + + VL+ +DA +E+++E A D A
Sbjct: 85 ETYHFELVSN----ESGAGVSRVALDYNIPIANAVLTTENDAQAIERIEEKASDAA 136
>sp|P66036|RISB_NEIMA 6,7-dimethyl-8-ribityllumazine synthase OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=ribH PE=3
SV=1
Length = 158
Score = 32.3 bits (72), Expect = 8.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 386 QGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA 441
+ Y F+++++ +SGA +S LD + + VL+ +DA +E+++E A D A
Sbjct: 85 ETYHFELVSN----ESGAGVSRVALDYNIPIANAVLTTENDAQAIERIEEKASDAA 136
>sp|A9M2W8|RISB_NEIM0 6,7-dimethyl-8-ribityllumazine synthase OS=Neisseria meningitidis
serogroup C (strain 053442) GN=ribH PE=3 SV=1
Length = 158
Score = 32.3 bits (72), Expect = 8.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 386 QGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA 441
+ Y F+++++ +SGA +S LD + + VL+ +DA +E+++E A D A
Sbjct: 85 ETYHFELVSN----ESGAGVSRVALDYNIPIANAVLTTENDAQAIERIEEKASDAA 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,226,020
Number of Sequences: 539616
Number of extensions: 7753141
Number of successful extensions: 18553
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 18428
Number of HSP's gapped (non-prelim): 51
length of query: 496
length of database: 191,569,459
effective HSP length: 122
effective length of query: 374
effective length of database: 125,736,307
effective search space: 47025378818
effective search space used: 47025378818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)